Query 014650
Match_columns 421
No_of_seqs 230 out of 2621
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 5.3E-45 1.1E-49 363.0 31.9 325 21-417 228-568 (571)
2 PHA02713 hypothetical protein; 100.0 3.8E-41 8.3E-46 336.9 27.7 277 73-401 259-542 (557)
3 PLN02153 epithiospecifier prot 100.0 3.9E-36 8.5E-41 285.8 28.3 274 91-410 4-304 (341)
4 PLN02193 nitrile-specifier pro 100.0 2.7E-35 6E-40 290.0 32.0 291 71-414 120-435 (470)
5 KOG4441 Proteins containing BT 100.0 8.9E-37 1.9E-41 304.1 21.2 257 41-353 303-567 (571)
6 PHA03098 kelch-like protein; P 100.0 6E-36 1.3E-40 301.7 25.8 258 84-406 264-525 (534)
7 TIGR03547 muta_rot_YjhT mutatr 100.0 1.6E-33 3.5E-38 268.8 27.3 265 68-366 14-332 (346)
8 PRK14131 N-acetylneuraminic ac 100.0 2.3E-33 4.9E-38 269.7 28.3 285 67-398 34-374 (376)
9 PLN02153 epithiospecifier prot 100.0 2E-33 4.4E-38 267.2 27.0 302 50-392 8-339 (341)
10 TIGR03548 mutarot_permut cycli 100.0 3.5E-33 7.6E-38 263.7 26.8 249 68-367 10-315 (323)
11 PHA02713 hypothetical protein; 100.0 3.3E-34 7.1E-39 287.0 19.9 246 47-341 280-545 (557)
12 PLN02193 nitrile-specifier pro 100.0 6.8E-33 1.5E-37 273.1 28.5 289 49-393 151-469 (470)
13 PHA02790 Kelch-like protein; P 100.0 4.4E-33 9.6E-38 275.1 25.9 205 70-399 270-477 (480)
14 TIGR03548 mutarot_permut cycli 100.0 9.7E-33 2.1E-37 260.6 25.1 266 110-418 3-303 (323)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 2.6E-32 5.7E-37 260.4 24.7 281 99-417 1-320 (346)
16 KOG4693 Uncharacterized conser 100.0 2.5E-31 5.5E-36 226.7 18.6 265 110-420 13-304 (392)
17 PHA03098 kelch-like protein; P 100.0 5.5E-31 1.2E-35 265.6 23.4 226 67-341 290-523 (534)
18 PRK14131 N-acetylneuraminic ac 100.0 1.8E-30 3.9E-35 249.6 24.1 281 95-418 18-343 (376)
19 KOG4693 Uncharacterized conser 100.0 2.4E-29 5.1E-34 214.7 18.7 264 67-366 19-313 (392)
20 PHA02790 Kelch-like protein; P 100.0 1.3E-27 2.9E-32 236.2 23.6 180 116-418 267-446 (480)
21 KOG1230 Protein containing rep 99.9 3.1E-25 6.6E-30 200.3 17.3 260 109-400 65-348 (521)
22 KOG0379 Kelch repeat-containin 99.9 9.1E-24 2E-28 207.8 24.3 253 109-417 59-327 (482)
23 KOG0379 Kelch repeat-containin 99.9 4.1E-22 8.8E-27 196.1 23.1 244 69-357 68-330 (482)
24 KOG1230 Protein containing rep 99.9 8.8E-23 1.9E-27 184.5 15.2 290 20-336 32-347 (521)
25 KOG4152 Host cell transcriptio 99.9 1.6E-22 3.5E-27 187.0 16.5 279 50-368 18-345 (830)
26 KOG4152 Host cell transcriptio 99.8 3.7E-20 8E-25 171.6 15.9 289 94-421 17-335 (830)
27 COG3055 Uncharacterized protei 99.8 7.6E-18 1.7E-22 150.8 20.5 277 53-366 29-360 (381)
28 COG3055 Uncharacterized protei 99.6 2.5E-13 5.4E-18 122.1 18.6 284 97-414 28-345 (381)
29 PF13964 Kelch_6: Kelch motif 99.3 9.7E-12 2.1E-16 82.6 6.0 49 111-167 2-50 (50)
30 PF13964 Kelch_6: Kelch motif 99.2 2.8E-11 6E-16 80.4 6.5 50 166-223 1-50 (50)
31 KOG2437 Muskelin [Signal trans 99.1 6.1E-11 1.3E-15 110.7 5.9 269 91-403 236-545 (723)
32 PF01344 Kelch_1: Kelch motif; 99.0 3.8E-10 8.3E-15 73.8 4.8 46 111-164 2-47 (47)
33 PF01344 Kelch_1: Kelch motif; 99.0 1.2E-09 2.5E-14 71.5 6.4 47 345-403 1-47 (47)
34 PF13415 Kelch_3: Galactose ox 99.0 1.1E-09 2.4E-14 72.2 5.3 49 120-175 1-49 (49)
35 KOG2437 Muskelin [Signal trans 98.8 7.3E-09 1.6E-13 97.1 7.6 159 210-400 238-420 (723)
36 PF13418 Kelch_4: Galactose ox 98.8 5.3E-09 1.1E-13 69.0 4.2 46 111-164 2-48 (49)
37 PF13418 Kelch_4: Galactose ox 98.8 7.9E-09 1.7E-13 68.1 4.5 48 166-220 1-48 (49)
38 PF07646 Kelch_2: Kelch motif; 98.8 1.2E-08 2.7E-13 67.1 5.3 49 345-403 1-49 (49)
39 PF07646 Kelch_2: Kelch motif; 98.8 2.2E-08 4.7E-13 65.9 6.3 49 166-220 1-49 (49)
40 smart00612 Kelch Kelch domain. 98.7 1.7E-08 3.7E-13 65.8 4.5 46 122-176 1-46 (47)
41 PF13415 Kelch_3: Galactose ox 98.7 4.3E-08 9.4E-13 64.5 6.3 47 179-230 2-48 (49)
42 smart00612 Kelch Kelch domain. 98.6 9.3E-08 2E-12 62.3 5.0 46 180-232 1-46 (47)
43 PLN02772 guanylate kinase 98.5 1.1E-06 2.4E-11 82.8 10.4 83 110-210 24-109 (398)
44 PLN02772 guanylate kinase 98.4 2.1E-06 4.6E-11 80.9 9.7 73 164-245 22-97 (398)
45 TIGR01640 F_box_assoc_1 F-box 98.3 8.3E-05 1.8E-09 66.6 19.3 195 146-394 15-230 (230)
46 PF07250 Glyoxal_oxid_N: Glyox 98.2 1.7E-05 3.6E-10 70.5 11.8 86 86-188 48-138 (243)
47 PF12937 F-box-like: F-box-lik 98.2 1.2E-06 2.7E-11 56.9 3.1 41 21-61 1-41 (47)
48 PF07250 Glyoxal_oxid_N: Glyox 98.2 0.00011 2.3E-09 65.4 15.5 88 146-245 47-139 (243)
49 PF13854 Kelch_5: Kelch motif 98.1 6.7E-06 1.5E-10 51.9 5.5 42 163-211 1-42 (42)
50 PF13854 Kelch_5: Kelch motif 98.1 7.5E-06 1.6E-10 51.7 5.3 39 109-155 3-42 (42)
51 TIGR01640 F_box_assoc_1 F-box 98.0 0.0018 3.9E-08 58.0 21.0 149 71-243 5-162 (230)
52 PLN03215 ascorbic acid mannose 98.0 0.0035 7.6E-08 59.2 23.1 38 20-57 3-41 (373)
53 smart00256 FBOX A Receptor for 97.8 2.2E-05 4.7E-10 49.2 3.3 39 24-62 1-39 (41)
54 PF00646 F-box: F-box domain; 97.6 1.3E-05 2.9E-10 52.3 0.1 41 21-61 3-43 (48)
55 PF13360 PQQ_2: PQQ-like domai 97.4 0.079 1.7E-06 47.3 21.8 116 85-241 4-129 (238)
56 PRK11138 outer membrane biogen 97.3 0.063 1.4E-06 52.3 21.9 221 70-395 119-356 (394)
57 PRK11138 outer membrane biogen 97.3 0.12 2.7E-06 50.2 23.2 114 69-218 67-189 (394)
58 KOG0281 Beta-TrCP (transducin 97.0 0.04 8.6E-07 50.5 14.6 42 21-62 75-120 (499)
59 PF07893 DUF1668: Protein of u 97.0 0.02 4.4E-07 54.4 13.6 102 119-239 75-192 (342)
60 KOG2120 SCF ubiquitin ligase, 96.9 0.00093 2E-08 60.1 3.4 51 11-61 88-138 (419)
61 TIGR03300 assembly_YfgL outer 96.8 0.54 1.2E-05 45.3 23.2 104 71-215 105-216 (377)
62 PF03089 RAG2: Recombination a 96.8 0.068 1.5E-06 47.8 14.1 85 160-246 81-176 (337)
63 PF07893 DUF1668: Protein of u 96.5 0.095 2.1E-06 49.8 14.3 123 70-218 75-216 (342)
64 TIGR03300 assembly_YfgL outer 96.3 1.2 2.5E-05 43.0 23.1 117 85-241 156-286 (377)
65 PF13360 PQQ_2: PQQ-like domai 96.0 0.99 2.1E-05 40.1 20.8 132 70-243 35-182 (238)
66 PF03089 RAG2: Recombination a 95.8 0.75 1.6E-05 41.4 15.3 81 100-188 82-174 (337)
67 PF12768 Rax2: Cortical protei 95.4 0.42 9.1E-06 43.8 13.1 110 83-218 15-130 (281)
68 PF12768 Rax2: Cortical protei 95.2 0.16 3.4E-06 46.6 9.6 92 143-243 14-110 (281)
69 KOG2055 WD40 repeat protein [G 94.4 2.2 4.7E-05 41.0 14.8 99 120-246 224-326 (514)
70 PF08450 SGL: SMP-30/Gluconola 94.3 3.8 8.3E-05 36.7 18.4 90 120-241 11-103 (246)
71 PRK11028 6-phosphogluconolacto 93.7 6.3 0.00014 37.1 23.1 111 68-211 43-158 (330)
72 KOG2997 F-box protein FBX9 [Ge 93.3 0.031 6.6E-07 50.8 0.7 45 21-65 107-156 (366)
73 PF08450 SGL: SMP-30/Gluconola 92.9 6.6 0.00014 35.2 16.9 125 83-241 21-152 (246)
74 TIGR03866 PQQ_ABC_repeats PQQ- 92.8 7.4 0.00016 35.4 22.1 92 85-212 12-106 (300)
75 PF05096 Glu_cyclase_2: Glutam 92.3 1.6 3.6E-05 39.3 10.2 106 70-211 54-159 (264)
76 TIGR03866 PQQ_ABC_repeats PQQ- 92.2 8.9 0.00019 34.9 21.8 66 70-156 41-106 (300)
77 PF05096 Glu_cyclase_2: Glutam 91.2 2.1 4.6E-05 38.6 9.7 109 218-365 38-149 (264)
78 PRK13684 Ycf48-like protein; P 90.6 16 0.00034 34.7 19.0 80 146-242 153-233 (334)
79 cd00094 HX Hemopexin-like repe 90.4 11 0.00023 32.6 15.3 18 315-332 161-178 (194)
80 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.8 29 0.00063 35.2 20.1 71 115-215 64-146 (527)
81 PRK04792 tolB translocation pr 88.6 27 0.00059 34.6 19.8 106 83-217 241-346 (448)
82 PF10282 Lactonase: Lactonase, 88.6 23 0.00049 33.7 18.7 144 69-245 46-214 (345)
83 KOG2055 WD40 repeat protein [G 87.0 9.8 0.00021 36.7 11.1 97 85-212 281-377 (514)
84 KOG0274 Cdc4 and related F-box 86.3 41 0.00089 34.2 17.7 45 18-62 105-149 (537)
85 PRK00178 tolB translocation pr 84.6 42 0.00092 32.9 20.6 106 83-217 222-327 (430)
86 PF08268 FBA_3: F-box associat 83.9 14 0.0003 29.4 9.5 72 321-404 20-93 (129)
87 KOG0310 Conserved WD40 repeat- 83.9 45 0.00097 32.6 15.4 124 86-247 50-178 (487)
88 cd00200 WD40 WD40 domain, foun 83.6 30 0.00065 30.4 16.4 84 145-245 31-115 (289)
89 PLN02919 haloacid dehalogenase 82.6 87 0.0019 34.9 25.3 57 321-395 825-891 (1057)
90 PRK11028 6-phosphogluconolacto 82.2 44 0.00096 31.3 23.4 105 73-210 3-111 (330)
91 PRK04922 tolB translocation pr 80.7 61 0.0013 31.9 20.3 129 83-242 227-355 (433)
92 PF06433 Me-amine-dh_H: Methyl 80.4 31 0.00066 32.5 11.4 78 69-159 45-132 (342)
93 cd00216 PQQ_DH Dehydrogenases 78.9 75 0.0016 31.9 19.8 73 115-216 56-137 (488)
94 PF02191 OLF: Olfactomedin-lik 78.6 51 0.0011 29.8 13.3 83 319-419 87-182 (250)
95 smart00284 OLF Olfactomedin-li 77.1 57 0.0012 29.5 15.1 76 120-220 34-113 (255)
96 KOG2321 WD40 repeat protein [G 76.8 87 0.0019 31.5 18.1 55 144-212 154-208 (703)
97 PF08268 FBA_3: F-box associat 76.7 33 0.00071 27.2 9.5 81 118-216 3-87 (129)
98 PF10282 Lactonase: Lactonase, 74.4 80 0.0017 29.9 19.0 86 146-241 16-105 (345)
99 KOG0289 mRNA splicing factor [ 72.0 1E+02 0.0022 30.0 12.7 82 146-242 412-494 (506)
100 PRK04792 tolB translocation pr 71.8 1.1E+02 0.0024 30.3 25.2 62 145-218 242-303 (448)
101 PLN03215 ascorbic acid mannose 69.8 93 0.002 29.9 11.9 56 349-404 250-306 (373)
102 PTZ00421 coronin; Provisional 69.0 1.3E+02 0.0029 30.2 18.8 54 179-246 138-191 (493)
103 TIGR02800 propeller_TolB tol-p 66.0 1.3E+02 0.0029 29.1 23.1 63 145-219 214-276 (417)
104 PF09910 DUF2139: Uncharacteri 65.0 1.2E+02 0.0025 28.1 16.2 113 98-223 27-153 (339)
105 PF03178 CPSF_A: CPSF A subuni 64.1 82 0.0018 29.4 10.7 122 85-241 63-190 (321)
106 PF07433 DUF1513: Protein of u 63.6 1.3E+02 0.0028 28.1 17.7 108 114-245 8-122 (305)
107 TIGR02658 TTQ_MADH_Hv methylam 62.8 1.5E+02 0.0031 28.4 23.2 80 67-159 53-142 (352)
108 PF12217 End_beta_propel: Cata 61.8 94 0.002 28.1 9.4 63 116-188 196-259 (367)
109 KOG0296 Angio-associated migra 61.1 1.5E+02 0.0033 28.1 14.0 145 179-394 76-222 (399)
110 PF02897 Peptidase_S9_N: Proly 60.9 1.3E+02 0.0028 29.3 11.7 112 69-209 236-357 (414)
111 TIGR03074 PQQ_membr_DH membran 59.7 2.5E+02 0.0054 30.1 14.7 18 320-337 413-432 (764)
112 PF13013 F-box-like_2: F-box-l 56.8 16 0.00035 28.2 3.6 29 21-49 22-50 (109)
113 smart00284 OLF Olfactomedin-li 56.7 1.5E+02 0.0033 26.8 14.1 104 111-242 74-193 (255)
114 PLN02919 haloacid dehalogenase 54.9 3.5E+02 0.0076 30.3 23.1 30 354-401 813-842 (1057)
115 COG4257 Vgb Streptogramin lyas 53.6 1.8E+02 0.0039 26.7 16.0 184 85-337 125-313 (353)
116 PRK05137 tolB translocation pr 53.4 2.3E+02 0.005 27.8 20.1 106 84-218 226-331 (435)
117 PRK00178 tolB translocation pr 52.7 2.3E+02 0.005 27.6 24.2 62 145-218 223-284 (430)
118 PF13570 PQQ_3: PQQ-like domai 51.6 22 0.00047 21.5 3.0 26 349-393 15-40 (40)
119 TIGR02800 propeller_TolB tol-p 51.5 2.3E+02 0.0051 27.3 21.1 105 84-217 214-318 (417)
120 PRK04043 tolB translocation pr 51.3 2.5E+02 0.0054 27.6 19.8 85 145-243 213-297 (419)
121 PF02239 Cytochrom_D1: Cytochr 51.3 2.3E+02 0.005 27.2 12.6 54 144-212 15-69 (369)
122 PRK03629 tolB translocation pr 50.9 2.5E+02 0.0055 27.5 20.0 104 84-217 223-327 (429)
123 cd00200 WD40 WD40 domain, foun 50.3 1.7E+02 0.0037 25.4 22.1 54 145-212 73-126 (289)
124 cd00094 HX Hemopexin-like repe 50.2 1.6E+02 0.0035 25.1 16.7 60 315-395 113-178 (194)
125 TIGR03032 conserved hypothetic 50.1 2.2E+02 0.0048 26.7 10.2 53 294-363 207-259 (335)
126 PRK04922 tolB translocation pr 49.2 2.7E+02 0.0058 27.3 22.3 62 145-218 228-289 (433)
127 KOG0305 Anaphase promoting com 47.8 3E+02 0.0066 27.5 13.0 85 146-247 198-282 (484)
128 PRK02889 tolB translocation pr 47.8 2.8E+02 0.0061 27.2 19.5 105 83-217 219-324 (427)
129 PF02239 Cytochrom_D1: Cytochr 46.9 2.7E+02 0.0059 26.8 15.8 103 72-212 6-111 (369)
130 KOG0289 mRNA splicing factor [ 46.8 2.9E+02 0.0063 27.0 14.0 105 145-292 369-474 (506)
131 KOG0308 Conserved WD40 repeat- 46.4 1.9E+02 0.004 29.8 9.8 100 120-247 129-237 (735)
132 PTZ00420 coronin; Provisional 44.6 3.7E+02 0.0081 27.6 17.9 41 202-245 149-189 (568)
133 KOG0310 Conserved WD40 repeat- 44.5 3.2E+02 0.007 26.9 12.6 54 179-247 250-303 (487)
134 PF14781 BBS2_N: Ciliary BBSom 44.0 50 0.0011 26.5 4.6 53 321-398 73-133 (136)
135 KOG4341 F-box protein containi 43.9 17 0.00036 35.1 2.2 38 22-59 73-110 (483)
136 PF06433 Me-amine-dh_H: Methyl 41.9 3.1E+02 0.0068 26.0 14.3 107 84-215 17-132 (342)
137 KOG0266 WD40 repeat-containing 41.3 3.7E+02 0.008 26.7 16.5 84 145-245 225-310 (456)
138 KOG1274 WD40 repeat protein [G 40.4 5E+02 0.011 28.0 18.0 42 144-188 75-117 (933)
139 KOG4378 Nuclear protein COP1 [ 39.1 4.1E+02 0.0088 26.6 11.2 75 321-418 187-267 (673)
140 KOG0278 Serine/threonine kinas 38.5 3E+02 0.0065 24.9 13.1 85 146-247 206-291 (334)
141 PRK13684 Ycf48-like protein; P 38.5 3.5E+02 0.0075 25.6 23.1 58 147-218 111-169 (334)
142 PF02191 OLF: Olfactomedin-lik 37.7 3.1E+02 0.0067 24.8 14.5 108 111-246 69-192 (250)
143 PF03178 CPSF_A: CPSF A subuni 37.4 3.4E+02 0.0074 25.2 16.3 62 145-222 62-129 (321)
144 KOG0647 mRNA export protein (c 37.1 3.5E+02 0.0075 25.2 10.2 187 17-247 18-222 (347)
145 KOG0318 WD40 repeat stress pro 37.0 4.5E+02 0.0098 26.4 14.0 85 167-285 443-527 (603)
146 TIGR03075 PQQ_enz_alc_DH PQQ-d 36.2 2.8E+02 0.006 28.2 9.8 77 144-240 440-520 (527)
147 PRK04043 tolB translocation pr 34.2 4.6E+02 0.01 25.7 16.5 112 83-219 256-367 (419)
148 COG3823 Glutamine cyclotransfe 33.1 1.9E+02 0.0041 25.4 6.6 99 227-364 49-149 (262)
149 COG4946 Uncharacterized protei 33.0 5.1E+02 0.011 25.8 15.5 60 143-212 105-164 (668)
150 PTZ00421 coronin; Provisional 32.8 5.3E+02 0.011 26.0 15.3 54 145-212 148-201 (493)
151 PRK05137 tolB translocation pr 32.6 4.8E+02 0.011 25.5 23.8 62 145-218 226-287 (435)
152 KOG2321 WD40 repeat protein [G 31.5 1E+02 0.0022 31.1 5.3 53 321-396 155-209 (703)
153 PF07734 FBA_1: F-box associat 30.3 3.1E+02 0.0068 22.6 8.1 68 322-403 22-94 (164)
154 KOG0643 Translation initiation 29.6 4.4E+02 0.0096 24.1 15.7 57 144-212 119-180 (327)
155 cd00216 PQQ_DH Dehydrogenases 29.3 5.9E+02 0.013 25.5 23.3 77 72-159 111-191 (488)
156 TIGR03074 PQQ_membr_DH membran 29.1 7.5E+02 0.016 26.6 15.1 35 171-220 189-225 (764)
157 PF06739 SBBP: Beta-propeller 28.5 1.1E+02 0.0023 18.4 3.3 21 225-245 14-34 (38)
158 PRK03629 tolB translocation pr 27.8 5.9E+02 0.013 25.0 25.1 63 145-219 223-285 (429)
159 PF09910 DUF2139: Uncharacteri 27.6 5.1E+02 0.011 24.2 15.8 41 320-361 172-219 (339)
160 COG1520 FOG: WD40-like repeat 27.5 5.4E+02 0.012 24.5 19.8 109 68-215 65-179 (370)
161 PLN00181 protein SPA1-RELATED; 27.3 8E+02 0.017 26.3 18.1 43 202-246 556-599 (793)
162 PLN00181 protein SPA1-RELATED; 27.0 8.1E+02 0.018 26.3 18.2 54 145-212 555-609 (793)
163 PF02897 Peptidase_S9_N: Proly 26.4 5.9E+02 0.013 24.5 16.5 84 145-242 252-344 (414)
164 KOG0316 Conserved WD40 repeat- 26.2 4.8E+02 0.01 23.4 8.5 86 145-246 81-166 (307)
165 KOG0294 WD40 repeat-containing 25.9 5.6E+02 0.012 24.0 16.4 48 92-156 27-74 (362)
166 KOG4378 Nuclear protein COP1 [ 25.2 7E+02 0.015 25.0 12.5 25 118-155 87-111 (673)
167 KOG0318 WD40 repeat stress pro 24.1 7.6E+02 0.016 24.9 10.4 97 120-245 454-552 (603)
168 PF13088 BNR_2: BNR repeat-lik 23.9 1.2E+02 0.0027 27.3 4.5 124 92-239 143-275 (275)
169 KOG0649 WD40 repeat protein [G 23.2 5.6E+02 0.012 23.1 12.3 132 68-242 123-263 (325)
170 PTZ00420 coronin; Provisional 23.2 8.4E+02 0.018 25.1 15.2 53 145-212 148-200 (568)
171 COG2706 3-carboxymuconate cycl 22.6 6.7E+02 0.015 23.8 22.6 65 322-403 267-334 (346)
172 COG4880 Secreted protein conta 22.2 7.6E+02 0.017 24.3 12.1 67 113-187 379-446 (603)
173 PF07433 DUF1513: Protein of u 21.3 6.8E+02 0.015 23.4 19.6 126 69-212 14-149 (305)
174 KOG0278 Serine/threonine kinas 21.1 3.7E+02 0.0081 24.3 6.4 51 321-395 205-257 (334)
175 KOG0640 mRNA cleavage stimulat 20.6 5.7E+02 0.012 23.9 7.7 87 145-245 238-327 (430)
176 PF14157 YmzC: YmzC-like prote 20.5 2.9E+02 0.0064 18.9 4.5 16 384-399 41-56 (63)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=5.3e-45 Score=363.01 Aligned_cols=325 Identities=24% Similarity=0.381 Sum_probs=255.5
Q ss_pred CCCChHHHHHHHhcCCCc----chhHHHHhhhHhHHhhhcCCccccccc-ccc-cCCceEEEeCCCC----CCCccEEEe
Q 014650 21 IPGLPNDVASLILAFVPY----SHQSRLKQTCRSWFLFFSSRTLVFDRH-KFN-SQSDLLCIFPQDP----SISSPFLFD 90 (421)
Q Consensus 21 ~~~Lp~dl~~~~l~~lp~----~~~~~~~~v~k~W~~l~~~~~~~~~~~-~~~-~~~~~~~~~g~~~----~~~~~~~~d 90 (421)
+|-||...+.+++...+. .....+-...++|+.++..+...+..+ +.. ...+.++++||.. ..+.+.+||
T Consensus 228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd 307 (571)
T KOG4441|consen 228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYD 307 (571)
T ss_pred ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEec
Confidence 367777777666665541 112223333456777776554322222 222 5667788888843 367789999
Q ss_pred CCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccce
Q 014650 91 AANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSF 170 (421)
Q Consensus 91 ~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 170 (421)
|.+++|..+++||.+ |..+++++++|+||++||.+. +. ..++++++|||.+++|..+++|+.+|..+
T Consensus 308 ~~~~~w~~~a~m~~~-----r~~~~~~~~~~~lYv~GG~~~-~~-------~~l~~ve~YD~~~~~W~~~a~M~~~R~~~ 374 (571)
T KOG4441|consen 308 PKTNEWSSLAPMPSP-----RCRVGVAVLNGKLYVVGGYDS-GS-------DRLSSVERYDPRTNQWTPVAPMNTKRSDF 374 (571)
T ss_pred CCcCcEeecCCCCcc-----cccccEEEECCEEEEEccccC-CC-------cccceEEEecCCCCceeccCCccCccccc
Confidence 999999999999976 889999999999999999863 11 36799999999999999999999999999
Q ss_pred EEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCcccc
Q 014650 171 ACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTIS 250 (421)
Q Consensus 171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~ 250 (421)
++++++ |.||++||.+ +...++++|+|||.+++|+.+++|+.+|+++++++.. ++||++||.++..
T Consensus 375 ~v~~l~--g~iYavGG~d-------g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~--g~iYi~GG~~~~~--- 440 (571)
T KOG4441|consen 375 GVAVLD--GKLYAVGGFD-------GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG--GKLYIIGGGDGSS--- 440 (571)
T ss_pred eeEEEC--CEEEEEeccc-------cccccccEEEecCCCCcccccCCCCcceeeeEEEEEC--CEEEEEcCcCCCc---
Confidence 999999 9999999986 5577899999999999999999999999887766665 8999999988765
Q ss_pred ccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccccccccc------CeEEEEccccCCCceEEEecCCceE
Q 014650 251 GVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRI------GKIVVMEDENRGRPEVFMLDKFDIL 324 (421)
Q Consensus 251 ~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~------g~i~v~GG~~~g~~~~~~~~~~~v~ 324 (421)
...+.+++ |||.+++|+.+++|..+ |..+ ++||++||. ++... ...|+
T Consensus 441 ------~~l~sve~------------YDP~t~~W~~~~~M~~~--R~~~g~a~~~~~iYvvGG~-~~~~~-----~~~VE 494 (571)
T KOG4441|consen 441 ------NCLNSVEC------------YDPETNTWTLIAPMNTR--RSGFGVAVLNGKIYVVGGF-DGTSA-----LSSVE 494 (571)
T ss_pred ------cccceEEE------------EcCCCCceeecCCcccc--cccceEEEECCEEEEECCc-cCCCc-----cceEE
Confidence 12333444 45555699999999984 4433 799999998 56322 25699
Q ss_pred EEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccCC
Q 014650 325 RYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPP 404 (421)
Q Consensus 325 ~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~ 404 (421)
+|||.+++|+.+++|+. +|...++++++++||++||+++...+ ..|++|||++++|+.... |
T Consensus 495 ~ydp~~~~W~~v~~m~~---~rs~~g~~~~~~~ly~vGG~~~~~~l-------------~~ve~ydp~~d~W~~~~~-~- 556 (571)
T KOG4441|consen 495 RYDPETNQWTMVAPMTS---PRSAVGVVVLGGKLYAVGGFDGNNNL-------------NTVECYDPETDTWTEVTE-P- 556 (571)
T ss_pred EEcCCCCceeEcccCcc---ccccccEEEECCEEEEEecccCcccc-------------ceeEEcCCCCCceeeCCC-c-
Confidence 99999999999998887 56889999999999999999887755 789999999999999875 4
Q ss_pred CCCCCCccceeEE
Q 014650 405 FPQPLDFGTAIMC 417 (421)
Q Consensus 405 ~~~~~~~~~~~~~ 417 (421)
...+..++++++
T Consensus 557 -~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 557 -ESGRGGAGVAVI 568 (571)
T ss_pred -cccccCcceEEe
Confidence 444555555443
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.8e-41 Score=336.87 Aligned_cols=277 Identities=17% Similarity=0.295 Sum_probs=210.2
Q ss_pred eEEEeCCCC--CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEE
Q 014650 73 LLCIFPQDP--SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRF 150 (421)
Q Consensus 73 ~~~~~g~~~--~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~y 150 (421)
.++++|+.. ....+++|||.+++|..+++||.+ |.++++++++++|||+||.+... ...+++++|
T Consensus 259 ~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~-----r~~~~~a~l~~~IYviGG~~~~~--------~~~~~v~~Y 325 (557)
T PHA02713 259 CLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNH-----IINYASAIVDNEIIIAGGYNFNN--------PSLNKVYKI 325 (557)
T ss_pred EEEEecCccccCCCCEEEEeCCCCeEEECCCCCcc-----ccceEEEEECCEEEEEcCCCCCC--------CccceEEEE
Confidence 455554421 224678999999999999999976 78899999999999999974222 246889999
Q ss_pred eCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEE
Q 014650 151 NFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFV 230 (421)
Q Consensus 151 d~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 230 (421)
||.+++|..+++|+.+|..+++++++ ++||++||.+ +....+++++||+.+++|+.+++||.+|..+++++
T Consensus 326 d~~~n~W~~~~~m~~~R~~~~~~~~~--g~IYviGG~~-------~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~ 396 (557)
T PHA02713 326 NIENKIHVELPPMIKNRCRFSLAVID--DTIYAIGGQN-------GTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV 396 (557)
T ss_pred ECCCCeEeeCCCCcchhhceeEEEEC--CEEEEECCcC-------CCCCCceEEEEECCCCeEEECCCCCcccccccEEE
Confidence 99999999999999999999999999 9999999975 23457889999999999999999999998877666
Q ss_pred EccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccc----cccCeEEEEc
Q 014650 231 AEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWER----SRIGKIVVME 306 (421)
Q Consensus 231 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~----~~~g~i~v~G 306 (421)
+. ++||++||.++.....+. ...+++..-+........|.|||++++|+.+++|+.+... ...++||++|
T Consensus 397 ~~--g~IYviGG~~~~~~~~~~----~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~G 470 (557)
T PHA02713 397 LD--QYIYIIGGRTEHIDYTSV----HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVC 470 (557)
T ss_pred EC--CEEEEEeCCCcccccccc----cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEe
Confidence 65 899999998653211000 0000000000000001125577777799999999774222 2237999999
Q ss_pred cccCCCceEEEecCCceEEEeCCC-CceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeE
Q 014650 307 DENRGRPEVFMLDKFDILRYDMGL-NRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLF 385 (421)
Q Consensus 307 G~~~g~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~ 385 (421)
|. ++... ....+++|||.+ ++|+.+++||. +|..+++++++|+||++||+++. ..
T Consensus 471 G~-~~~~~----~~~~ve~Ydp~~~~~W~~~~~m~~---~r~~~~~~~~~~~iyv~Gg~~~~----------------~~ 526 (557)
T PHA02713 471 DI-KDEKN----VKTCIFRYNTNTYNGWELITTTES---RLSALHTILHDNTIMMLHCYESY----------------ML 526 (557)
T ss_pred CC-CCCCc----cceeEEEecCCCCCCeeEccccCc---ccccceeEEECCEEEEEeeecce----------------ee
Confidence 97 33221 114689999999 89999999988 56889999999999999998853 36
Q ss_pred EEEEeCCcceeeEecc
Q 014650 386 IQIYHPRKKTWRYIFT 401 (421)
Q Consensus 386 v~~yd~~~~~W~~i~~ 401 (421)
+++||+.+++|+.+++
T Consensus 527 ~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 527 QDTFNVYTYEWNHICH 542 (557)
T ss_pred hhhcCcccccccchhh
Confidence 8999999999999864
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3.9e-36 Score=285.76 Aligned_cols=274 Identities=18% Similarity=0.273 Sum_probs=193.3
Q ss_pred CCCCcEEECCC----CCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC-C
Q 014650 91 AANRACRPLPP----LPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI-S 165 (421)
Q Consensus 91 ~~~~~W~~l~~----l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~-~ 165 (421)
+...+|..++. +|.| |..|++++++++|||+||...... ...+++++||+.+++|+.+++++ .
T Consensus 4 ~~~~~W~~~~~~~~~~P~p-----R~~h~~~~~~~~iyv~GG~~~~~~-------~~~~~~~~yd~~~~~W~~~~~~~~~ 71 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGP-----RCSHGIAVVGDKLYSFGGELKPNE-------HIDKDLYVFDFNTHTWSIAPANGDV 71 (341)
T ss_pred ccCCeEEEecCCCCCCCCC-----CCcceEEEECCEEEEECCccCCCC-------ceeCcEEEEECCCCEEEEcCccCCC
Confidence 36678999976 5544 899999999999999999753221 24578999999999999998764 3
Q ss_pred Cc---cceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCC-----CCCCCCeeEEEEccCCeE
Q 014650 166 PR---GSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM-----PRFRAGCVGFVAEESGEF 237 (421)
Q Consensus 166 ~r---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~~~i 237 (421)
+| .+|++++++ ++||++||.+ .....+++++||+++++|+.+++| |.+|..|++++.. ++|
T Consensus 72 p~~~~~~~~~~~~~--~~iyv~GG~~-------~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~--~~i 140 (341)
T PLN02153 72 PRISCLGVRMVAVG--TKLYIFGGRD-------EKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE--NHV 140 (341)
T ss_pred CCCccCceEEEEEC--CEEEEECCCC-------CCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC--CEE
Confidence 44 368889999 9999999975 234577899999999999999887 7888877766554 899
Q ss_pred EEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccc-cccc------ccCeEEEEcccc-
Q 014650 238 WVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDE-WERS------RIGKIVVMEDEN- 309 (421)
Q Consensus 238 yv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~~~------~~g~i~v~GG~~- 309 (421)
||+||.+........ ..++++++||+ ++++|+.++.+..+ .+|. ..+++|++||..
T Consensus 141 yv~GG~~~~~~~~~~----~~~~~v~~yd~------------~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 204 (341)
T PLN02153 141 YVFGGVSKGGLMKTP----ERFRTIEAYNI------------ADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFAT 204 (341)
T ss_pred EEECCccCCCccCCC----cccceEEEEEC------------CCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecccc
Confidence 999998643211100 12334445554 45599999876421 1232 237899999861
Q ss_pred ----CCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeE
Q 014650 310 ----RGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLF 385 (421)
Q Consensus 310 ----~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~ 385 (421)
+|... + ..+++++||+.+++|+++..+...+.+|..+++++++++|||+||....+.. .+.......++
T Consensus 205 ~~~~gG~~~-~--~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~----~~~~~~~~~n~ 277 (341)
T PLN02153 205 SILPGGKSD-Y--ESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLK----GHLGPGTLSNE 277 (341)
T ss_pred ccccCCccc-e--ecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccc----ccccccccccc
Confidence 11111 1 2368999999999999997643323367889999999999999997422100 00011233468
Q ss_pred EEEEeCCcceeeEeccc--CCCCCCCC
Q 014650 386 IQIYHPRKKTWRYIFTK--PPFPQPLD 410 (421)
Q Consensus 386 v~~yd~~~~~W~~i~~~--p~~~~~~~ 410 (421)
+++||+++++|+.+... |++|..+.
T Consensus 278 v~~~d~~~~~W~~~~~~~~~~~pr~~~ 304 (341)
T PLN02153 278 GYALDTETLVWEKLGECGEPAMPRGWT 304 (341)
T ss_pred EEEEEcCccEEEeccCCCCCCCCCccc
Confidence 99999999999998643 44444443
No 4
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.7e-35 Score=290.03 Aligned_cols=291 Identities=14% Similarity=0.134 Sum_probs=206.7
Q ss_pred CceEEEeCCC--CCCCccEE--EeCCC----CcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCC
Q 014650 71 SDLLCIFPQD--PSISSPFL--FDAAN----RACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPL 142 (421)
Q Consensus 71 ~~~~~~~g~~--~~~~~~~~--~d~~~----~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 142 (421)
...|+.|.|. ..++.+-. ++|.+ ++|..++++...| .+|.+|++++++++|||+||...... .
T Consensus 120 ~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P--~pR~~h~~~~~~~~iyv~GG~~~~~~-------~ 190 (470)
T PLN02193 120 GGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGP--GLRCSHGIAQVGNKIYSFGGEFTPNQ-------P 190 (470)
T ss_pred CCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCC--CCccccEEEEECCEEEEECCcCCCCC-------C
Confidence 3445555442 23344434 47655 8999987642111 34999999999999999999743221 2
Q ss_pred CCCeEEEEeCccCceeecccc---CC-CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650 143 PSDSAFRFNFLTFSWERIAPM---IS-PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE 218 (421)
Q Consensus 143 ~~~~v~~yd~~t~~W~~~~~~---~~-~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 218 (421)
..+++|+||+.+++|+.++++ |. .|..|++++++ ++|||+||.+ ....++++++||+.+++|+.+++
T Consensus 191 ~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~--~~lYvfGG~~-------~~~~~ndv~~yD~~t~~W~~l~~ 261 (470)
T PLN02193 191 IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG--STLYVFGGRD-------ASRQYNGFYSFDTTTNEWKLLTP 261 (470)
T ss_pred eeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC--CEEEEECCCC-------CCCCCccEEEEECCCCEEEEcCc
Confidence 346899999999999988653 33 25688899999 9999999975 23457899999999999999988
Q ss_pred C---CCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccc-cc
Q 014650 219 M---PRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWD-EW 294 (421)
Q Consensus 219 ~---~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~-~~ 294 (421)
+ |.+|..|++++.. ++|||+||.+... ..+++++||+.+ ++|+.++.... +.
T Consensus 262 ~~~~P~~R~~h~~~~~~--~~iYv~GG~~~~~----------~~~~~~~yd~~t------------~~W~~~~~~~~~~~ 317 (470)
T PLN02193 262 VEEGPTPRSFHSMAADE--ENVYVFGGVSATA----------RLKTLDSYNIVD------------KKWFHCSTPGDSFS 317 (470)
T ss_pred CCCCCCCccceEEEEEC--CEEEEECCCCCCC----------CcceEEEEECCC------------CEEEeCCCCCCCCC
Confidence 7 7889888766654 8999999986543 223345555555 59999875211 11
Q ss_pred ccc------ccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCC
Q 014650 295 ERS------RIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSD 368 (421)
Q Consensus 295 ~~~------~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~ 368 (421)
.|. ..+++|++||. ++.. .+++++||+.+++|+.+.++...+.+|..++++.++++|||+||.....
T Consensus 318 ~R~~~~~~~~~gkiyviGG~-~g~~------~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~ 390 (470)
T PLN02193 318 IRGGAGLEVVQGKVWVVYGF-NGCE------VDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMD 390 (470)
T ss_pred CCCCcEEEEECCcEEEEECC-CCCc------cCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCc
Confidence 232 23789999987 4431 3789999999999999987744444788899999999999999986422
Q ss_pred ccccccccccccceeeEEEEEeCCcceeeEecccC---CCCCCCCccce
Q 014650 369 LNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP---PFPQPLDFGTA 414 (421)
Q Consensus 369 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p---~~~~~~~~~~~ 414 (421)
.. .........+++++||+.+++|+.+..++ ..|.+|.++++
T Consensus 391 ~~----~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~ 435 (470)
T PLN02193 391 PL----AHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTAS 435 (470)
T ss_pred cc----cccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccc
Confidence 10 00011234468999999999999998655 24666666654
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=8.9e-37 Score=304.11 Aligned_cols=257 Identities=21% Similarity=0.344 Sum_probs=203.9
Q ss_pred hHHHHhhhHhHHhhhcCCcccccccccccCCceEEEeCCCC----CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEE
Q 014650 41 QSRLKQTCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDP----SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTS 116 (421)
Q Consensus 41 ~~~~~~v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~ 116 (421)
...+....+.|..+...+. .+.+......++.+|+.||.. ..+++++|||.+++|..+++|+.+ |..+++
T Consensus 303 ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~-----R~~~~v 376 (571)
T KOG4441|consen 303 VECYDPKTNEWSSLAPMPS-PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK-----RSDFGV 376 (571)
T ss_pred eEEecCCcCcEeecCCCCc-ccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-----ccccee
Confidence 3344555667888776663 222333566788999999843 567899999999999999999976 999999
Q ss_pred EEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCC
Q 014650 117 ISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAA 196 (421)
Q Consensus 117 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 196 (421)
++++|.||++||.+.. ..++++++|||.+++|..+++|+.+|.+|++++++ ++||++||.++.
T Consensus 377 ~~l~g~iYavGG~dg~---------~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~--g~iYi~GG~~~~------ 439 (571)
T KOG4441|consen 377 AVLDGKLYAVGGFDGE---------KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG--GKLYIIGGGDGS------ 439 (571)
T ss_pred EEECCEEEEEeccccc---------cccccEEEecCCCCcccccCCCCcceeeeEEEEEC--CEEEEEcCcCCC------
Confidence 9999999999998633 36889999999999999999999999999999999 999999998632
Q ss_pred CCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCC
Q 014650 197 GSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDH 276 (421)
Q Consensus 197 ~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~ 276 (421)
...++++++|||.+++|+.+++|+.+|..+..+++. ++||++||.++...+.. + |.
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~--~~iYvvGG~~~~~~~~~----------V------------E~ 495 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLN--GKIYVVGGFDGTSALSS----------V------------ER 495 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccceEEEEC--CEEEEECCccCCCccce----------E------------EE
Confidence 238999999999999999999999999887655554 89999999988432222 2 44
Q ss_pred CCCCCCCceEecCcccccccc----ccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEE
Q 014650 277 DDGDRGTWREVGDMWDEWERS----RIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFI 352 (421)
Q Consensus 277 yd~~~~~W~~~~~~~~~~~~~----~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~ 352 (421)
|||++++|+.+++|..+.... ..+++|++||. +|.. ..+.|+.|||++++|+...+ +.. .|...+++
T Consensus 496 ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~-~~~~-----~l~~ve~ydp~~d~W~~~~~-~~~--~~~~~~~~ 566 (571)
T KOG4441|consen 496 YDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGF-DGNN-----NLNTVECYDPETDTWTEVTE-PES--GRGGAGVA 566 (571)
T ss_pred EcCCCCceeEcccCccccccccEEEECCEEEEEecc-cCcc-----ccceeEEcCCCCCceeeCCC-ccc--cccCcceE
Confidence 677777999999888742222 23799999998 5554 34789999999999999988 442 34444444
Q ss_pred E
Q 014650 353 V 353 (421)
Q Consensus 353 ~ 353 (421)
+
T Consensus 567 ~ 567 (571)
T KOG4441|consen 567 V 567 (571)
T ss_pred E
Confidence 4
No 6
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=6e-36 Score=301.66 Aligned_cols=258 Identities=17% Similarity=0.250 Sum_probs=201.9
Q ss_pred CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650 84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM 163 (421)
Q Consensus 84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 163 (421)
.....|++..++|..+++.+. +..|++++.+++||++||..... ...+++++||+.+++|..+++|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~lyv~GG~~~~~--------~~~~~v~~yd~~~~~W~~~~~~ 329 (534)
T PHA03098 264 YNYITNYSPLSEINTIIDIHY------VYCFGSVVLNNVIYFIGGMNKNN--------LSVNSVVSYDTKTKSWNKVPEL 329 (534)
T ss_pred ceeeecchhhhhcccccCccc------cccceEEEECCEEEEECCCcCCC--------CeeccEEEEeCCCCeeeECCCC
Confidence 345678888999998876663 34568889999999999985433 2457899999999999999999
Q ss_pred CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEecc
Q 014650 164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGY 243 (421)
Q Consensus 164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~ 243 (421)
+.+|..|++++++ ++||++||.. .....+++++||+.+++|+.+++||.+|..++++++. ++||++||.
T Consensus 330 ~~~R~~~~~~~~~--~~lyv~GG~~-------~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~--~~iYv~GG~ 398 (534)
T PHA03098 330 IYPRKNPGVTVFN--NRIYVIGGIY-------NSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN--NLIYVIGGI 398 (534)
T ss_pred CcccccceEEEEC--CEEEEEeCCC-------CCEecceEEEEcCCCCceeeCCCcCcCCccceEEEEC--CEEEEECCc
Confidence 9999999999999 9999999975 3355788999999999999999999999888776654 899999997
Q ss_pred CCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccccccc----ccCeEEEEccccCCCceEEEec
Q 014650 244 GDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS----RIGKIVVMEDENRGRPEVFMLD 319 (421)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~----~~g~i~v~GG~~~g~~~~~~~~ 319 (421)
.... ...+.+++| |+.+++|+.+++++.+.... ..+++|++||. .+..... .
T Consensus 399 ~~~~---------~~~~~v~~y------------d~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~-~~~~~~~--~ 454 (534)
T PHA03098 399 SKND---------ELLKTVECF------------SLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI-SYIDNIK--V 454 (534)
T ss_pred CCCC---------cccceEEEE------------eCCCCeeeecCCCCccccCceEEEECCEEEEECCc-cCCCCCc--c
Confidence 5432 112334455 45555999999887642211 23789999997 2221111 1
Q ss_pred CCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEe
Q 014650 320 KFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYI 399 (421)
Q Consensus 320 ~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i 399 (421)
...+++||+.+++|+.+++++. +|..++++.++++|||+||.++... .+++++||+++++|+.+
T Consensus 455 ~~~v~~yd~~~~~W~~~~~~~~---~r~~~~~~~~~~~iyv~GG~~~~~~-------------~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 455 YNIVESYNPVTNKWTELSSLNF---PRINASLCIFNNKIYVVGGDKYEYY-------------INEIEVYDDKTNTWTLF 518 (534)
T ss_pred cceEEEecCCCCceeeCCCCCc---ccccceEEEECCEEEEEcCCcCCcc-------------cceeEEEeCCCCEEEec
Confidence 2459999999999999998876 4678888899999999999875431 36899999999999999
Q ss_pred cccCCCC
Q 014650 400 FTKPPFP 406 (421)
Q Consensus 400 ~~~p~~~ 406 (421)
+.+|+..
T Consensus 519 ~~~p~~~ 525 (534)
T PHA03098 519 CKFPKVI 525 (534)
T ss_pred CCCcccc
Confidence 8877544
No 7
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.6e-33 Score=268.77 Aligned_cols=265 Identities=13% Similarity=0.162 Sum_probs=185.5
Q ss_pred ccCCceEEEeCCCCCCCccEEEeC--CCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCC
Q 014650 68 NSQSDLLCIFPQDPSISSPFLFDA--ANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSD 145 (421)
Q Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~d~--~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 145 (421)
...++.||++||.. .+++++||+ .+++|..+++||.. +|..+++++++++|||+||....... +....++
T Consensus 14 ~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~----~R~~~~~~~~~~~iYv~GG~~~~~~~---~~~~~~~ 85 (346)
T TIGR03547 14 AIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGG----PRNQAVAAAIDGKLYVFGGIGKANSE---GSPQVFD 85 (346)
T ss_pred EEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCC----CcccceEEEECCEEEEEeCCCCCCCC---Ccceecc
Confidence 34577889988853 356899996 67899999999842 28889999999999999997532100 0112467
Q ss_pred eEEEEeCccCceeecc-ccCCCccceEEE-EEccCCEEEEEcCCcccc---c------cCC------------------C
Q 014650 146 SAFRFNFLTFSWERIA-PMISPRGSFACA-AVRSLNQIIVAGGGSRHS---L------FGA------------------A 196 (421)
Q Consensus 146 ~v~~yd~~t~~W~~~~-~~~~~r~~~~~~-~~~~~~~iyv~GG~~~~~---~------~~~------------------~ 196 (421)
++|+||+.+++|+.++ ++|.+|.+++++ +++ ++||++||.+... . ++. .
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~--g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHN--GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEEEeC--CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 8999999999999997 456677777776 678 9999999975210 0 000 0
Q ss_pred CCccceEEEEECCCCceEECCCCCC-CCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCC
Q 014650 197 GSRISSVERYDVAKNEWVSMDEMPR-FRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDD 275 (421)
Q Consensus 197 ~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~ 275 (421)
...++++++||+.+++|+.+++||. +|..+++++ .+ ++|||+||...... . ...+++|+
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~-~~-~~iyv~GG~~~~~~-~--------~~~~~~y~--------- 223 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVH-KG-NKLLLINGEIKPGL-R--------TAEVKQYL--------- 223 (346)
T ss_pred cCccceEEEEECCCCceeECccCCCCcCCCceEEE-EC-CEEEEEeeeeCCCc-c--------chheEEEE---------
Confidence 0124789999999999999999996 566554444 44 89999999754321 0 11122333
Q ss_pred CCCCCCCCceEecCcccccc-----------ccccCeEEEEccccC-CCc------eEEEe----cCCceEEEeCCCCce
Q 014650 276 HDDGDRGTWREVGDMWDEWE-----------RSRIGKIVVMEDENR-GRP------EVFML----DKFDILRYDMGLNRW 333 (421)
Q Consensus 276 ~yd~~~~~W~~~~~~~~~~~-----------~~~~g~i~v~GG~~~-g~~------~~~~~----~~~~v~~yd~~~~~W 333 (421)
||+++++|+.+++|+.+.. ....++||++||... +.. ..+.. ....+++||+++++|
T Consensus 224 -~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 224 -FTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred -ecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 2344559999999976421 113479999999720 100 01111 113589999999999
Q ss_pred eEecccCCCCCCCCceEEEEeCCeEEEEEeecC
Q 014650 334 LKETTIPEIRPCKKPLGFIVLDGELYVMTVLKG 366 (421)
Q Consensus 334 ~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~ 366 (421)
+.+.+||.+ |..+++++++++|||+||.+.
T Consensus 303 ~~~~~lp~~---~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 303 SKVGKLPQG---LAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred cccCCCCCC---ceeeEEEEcCCEEEEEeccCC
Confidence 999999874 567788889999999999864
No 8
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.3e-33 Score=269.72 Aligned_cols=285 Identities=13% Similarity=0.173 Sum_probs=199.0
Q ss_pred cccCCceEEEeCCCCCCCccEEEeCC--CCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCC
Q 014650 67 FNSQSDLLCIFPQDPSISSPFLFDAA--NRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPS 144 (421)
Q Consensus 67 ~~~~~~~~~~~g~~~~~~~~~~~d~~--~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 144 (421)
....++.+|++||.. .+.++.||.. +++|..+++||.+ +|.++++++++++|||+||....... +....+
T Consensus 34 ~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~----~r~~~~~v~~~~~IYV~GG~~~~~~~---~~~~~~ 105 (376)
T PRK14131 34 GAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGG----PREQAVAAFIDGKLYVFGGIGKTNSE---GSPQVF 105 (376)
T ss_pred EEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCC----CcccceEEEECCEEEEEcCCCCCCCC---CceeEc
Confidence 344577888887742 3458899986 4789999998852 38889999999999999997531100 011246
Q ss_pred CeEEEEeCccCceeeccc-cCCCccceEEEE-EccCCEEEEEcCCcccc---c---------------------cCC---
Q 014650 145 DSAFRFNFLTFSWERIAP-MISPRGSFACAA-VRSLNQIIVAGGGSRHS---L---------------------FGA--- 195 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~-~~~~r~~~~~~~-~~~~~~iyv~GG~~~~~---~---------------------~~~--- 195 (421)
+++|+||+.+++|+.+++ +|.++.+|++++ .+ ++||++||.+... . |..
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~--~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~ 183 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHN--GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE 183 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeC--CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence 889999999999999986 466677787777 67 9999999975210 0 000
Q ss_pred CCCccceEEEEECCCCceEECCCCCC-CCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcC
Q 014650 196 AGSRISSVERYDVAKNEWVSMDEMPR-FRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTD 274 (421)
Q Consensus 196 ~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~ 274 (421)
.....+.+++||+.+++|+.++++|. +|..++ ++..+ ++|||+||...... ...+++.|
T Consensus 184 ~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a-~v~~~-~~iYv~GG~~~~~~---------~~~~~~~~--------- 243 (376)
T PRK14131 184 DYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSA-VVIKG-NKLWLINGEIKPGL---------RTDAVKQG--------- 243 (376)
T ss_pred hcCcCceEEEEECCCCeeeECCcCCCCCCCcce-EEEEC-CEEEEEeeeECCCc---------CChhheEE---------
Confidence 00124789999999999999999997 555554 44444 89999999744321 01112222
Q ss_pred CCCCCCCCCceEecCcccccc------------ccccCeEEEEccccCCCc--------eEEE---e-cCCceEEEeCCC
Q 014650 275 DHDDGDRGTWREVGDMWDEWE------------RSRIGKIVVMEDENRGRP--------EVFM---L-DKFDILRYDMGL 330 (421)
Q Consensus 275 ~~yd~~~~~W~~~~~~~~~~~------------~~~~g~i~v~GG~~~g~~--------~~~~---~-~~~~v~~yd~~~ 330 (421)
.||+++++|+.+++|+.+.. ....++||++||.. ... ..+. + ....+++||+++
T Consensus 244 -~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~ 321 (376)
T PRK14131 244 -KFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGAN-FPGARENYQNGKLYAHEGLKKSWSDEIYALVN 321 (376)
T ss_pred -EecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccC-CCCChhhhhcCCcccccCCcceeehheEEecC
Confidence 13556669999999875311 11347999999972 110 0110 0 012478999999
Q ss_pred CceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeE
Q 014650 331 NRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRY 398 (421)
Q Consensus 331 ~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 398 (421)
++|+.+++||.+ |..++++.++++|||+||..... ...++|++|+++.+.++.
T Consensus 322 ~~W~~~~~lp~~---r~~~~av~~~~~iyv~GG~~~~~------------~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 322 GKWQKVGELPQG---LAYGVSVSWNNGVLLIGGETAGG------------KAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CcccccCcCCCC---ccceEEEEeCCEEEEEcCCCCCC------------cEeeeEEEEEEcCCEEEE
Confidence 999999999874 57778899999999999975322 345799999999888864
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2e-33 Score=267.16 Aligned_cols=302 Identities=18% Similarity=0.198 Sum_probs=197.2
Q ss_pred hHHhhhcCCc-ccccc--cccccCCceEEEeCCCC-----CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCC
Q 014650 50 SWFLFFSSRT-LVFDR--HKFNSQSDLLCIFPQDP-----SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGP 121 (421)
Q Consensus 50 ~W~~l~~~~~-~~~~~--~~~~~~~~~~~~~g~~~-----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~ 121 (421)
+|..+..... .+..| .......+.||++||.. ..+++++||+.+++|..+++++..+ ...+.+|+++++++
T Consensus 8 ~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p-~~~~~~~~~~~~~~ 86 (341)
T PLN02153 8 GWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVP-RISCLGVRMVAVGT 86 (341)
T ss_pred eEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCC-CCccCceEEEEECC
Confidence 4777755322 22222 22445567899988842 2368999999999999998775321 01234788999999
Q ss_pred EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc-----CCCccceEEEEEccCCEEEEEcCCccccccCCC
Q 014650 122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM-----ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAA 196 (421)
Q Consensus 122 ~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 196 (421)
+||||||.... ..++++++||+.+++|+.+++| |.+|..|++++++ ++|||+||.+..... ..
T Consensus 87 ~iyv~GG~~~~---------~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~--~~iyv~GG~~~~~~~-~~ 154 (341)
T PLN02153 87 KLYIFGGRDEK---------REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE--NHVYVFGGVSKGGLM-KT 154 (341)
T ss_pred EEEEECCCCCC---------CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC--CEEEEECCccCCCcc-CC
Confidence 99999997532 2467899999999999999887 7889999999999 999999998632100 01
Q ss_pred CCccceEEEEECCCCceEECCCCC---CCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCc
Q 014650 197 GSRISSVERYDVAKNEWVSMDEMP---RFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKT 273 (421)
Q Consensus 197 ~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~ 273 (421)
...++++++||+++++|+.++++. .+|..+.++++. ++|||+||........+. .....+++++||+.+
T Consensus 155 ~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~gG~--~~~~~~~v~~yd~~~---- 226 (341)
T PLN02153 155 PERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQ--GKIWVVYGFATSILPGGK--SDYESNAVQFFDPAS---- 226 (341)
T ss_pred CcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEEC--CeEEEEeccccccccCCc--cceecCceEEEEcCC----
Confidence 124578999999999999998764 677777655554 899999997532110000 001123455555544
Q ss_pred CCCCCCCCCCceEecCcc-ccccccc------cCeEEEEccccCC--Cce-EEEecCCceEEEeCCCCceeEecccCCCC
Q 014650 274 DDHDDGDRGTWREVGDMW-DEWERSR------IGKIVVMEDENRG--RPE-VFMLDKFDILRYDMGLNRWLKETTIPEIR 343 (421)
Q Consensus 274 ~~~yd~~~~~W~~~~~~~-~~~~~~~------~g~i~v~GG~~~g--~~~-~~~~~~~~v~~yd~~~~~W~~~~~~~~~~ 343 (421)
++|++++... .+.+|.. .++||++||.... ... ......+++++||+.+++|+.+.....+.
T Consensus 227 --------~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~ 298 (341)
T PLN02153 227 --------GKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPA 298 (341)
T ss_pred --------CcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCC
Confidence 5999997532 1113332 2699999997310 000 00011368999999999999986432211
Q ss_pred C--CCCceEEE--EeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCC
Q 014650 344 P--CKKPLGFI--VLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPR 392 (421)
Q Consensus 344 ~--~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 392 (421)
. .+..++++ ..+++|||+||.+++. ....++++|+..
T Consensus 299 ~pr~~~~~~~~~v~~~~~~~~~gG~~~~~------------~~~~~~~~~~~~ 339 (341)
T PLN02153 299 MPRGWTAYTTATVYGKNGLLMHGGKLPTN------------ERTDDLYFYAVN 339 (341)
T ss_pred CCCccccccccccCCcceEEEEcCcCCCC------------ccccceEEEecc
Confidence 1 22323333 3345899999997543 223688988753
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.5e-33 Score=263.65 Aligned_cols=249 Identities=15% Similarity=0.202 Sum_probs=184.9
Q ss_pred ccCCceEEEeCCCCC-------------CCccEEEe-CCC-CcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccC
Q 014650 68 NSQSDLLCIFPQDPS-------------ISSPFLFD-AAN-RACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFD 132 (421)
Q Consensus 68 ~~~~~~~~~~g~~~~-------------~~~~~~~d-~~~-~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 132 (421)
+..++.+|++||... .++++.|+ +.. .+|..+++||.+ |.++++++++++||++||.+..
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~-----r~~~~~~~~~~~lyviGG~~~~ 84 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE-----AAYGASVSVENGIYYIGGSNSS 84 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc-----ccceEEEEECCEEEEEcCCCCC
Confidence 445677888888322 13567775 432 379999999976 7778888899999999997532
Q ss_pred CCCCCCCCCCCCCeEEEEeCccCce----eeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEEC
Q 014650 133 ARSFPLDRPLPSDSAFRFNFLTFSW----ERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDV 208 (421)
Q Consensus 133 ~~~~~~~~~~~~~~v~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~ 208 (421)
..++++++||+.+++| +.+++||.+|..|++++++ ++|||+||.. .....+++++||+
T Consensus 85 ---------~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~--~~iYv~GG~~-------~~~~~~~v~~yd~ 146 (323)
T TIGR03548 85 ---------ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD--GTLYVGGGNR-------NGKPSNKSYLFNL 146 (323)
T ss_pred ---------CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC--CEEEEEeCcC-------CCccCceEEEEcC
Confidence 2468999999999998 7889999999999999999 9999999974 2344789999999
Q ss_pred CCCceEECCCCCC-CCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEe
Q 014650 209 AKNEWVSMDEMPR-FRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREV 287 (421)
Q Consensus 209 ~t~~W~~~~~~~~-~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~ 287 (421)
.+++|+.+++||. +|..+++++.. ++|||+||.++.. ..++++ ||+++++|+.+
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~--~~iYv~GG~~~~~-----------~~~~~~------------yd~~~~~W~~~ 201 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQ--NELYVFGGGSNIA-----------YTDGYK------------YSPKKNQWQKV 201 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEEC--CEEEEEcCCCCcc-----------ccceEE------------EecCCCeeEEC
Confidence 9999999999885 67666554444 8999999976431 122344 45555599999
Q ss_pred cCccc---ccccc-------ccCeEEEEccccCCCce---E-----------------EE-------ecCCceEEEeCCC
Q 014650 288 GDMWD---EWERS-------RIGKIVVMEDENRGRPE---V-----------------FM-------LDKFDILRYDMGL 330 (421)
Q Consensus 288 ~~~~~---~~~~~-------~~g~i~v~GG~~~g~~~---~-----------------~~-------~~~~~v~~yd~~~ 330 (421)
++|+. +..+. ..++||++||. ++... + |. ...+.+++||+.+
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 280 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGGF-NKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRT 280 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECCc-CHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCC
Confidence 87642 11111 13799999997 32100 0 00 0125799999999
Q ss_pred CceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCC
Q 014650 331 NRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGS 367 (421)
Q Consensus 331 ~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~ 367 (421)
++|+.++++|.. .|..++++.++++||++||....
T Consensus 281 ~~W~~~~~~p~~--~r~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 281 GKWKSIGNSPFF--ARCGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred CeeeEccccccc--ccCchheEEECCEEEEEeccccC
Confidence 999999987742 57888999999999999997543
No 11
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-34 Score=287.01 Aligned_cols=246 Identities=13% Similarity=0.159 Sum_probs=185.6
Q ss_pred hhHhHHhhhcCCcccccccccccCCceEEEeCCCC----CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCE
Q 014650 47 TCRSWFLFFSSRTLVFDRHKFNSQSDLLCIFPQDP----SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPY 122 (421)
Q Consensus 47 v~k~W~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~ 122 (421)
..++|..+...|. .+........++.+|++||.. ..+++++|||.+++|..+++|+.+ |..+++++++++
T Consensus 280 ~~~~W~~l~~mp~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~-----R~~~~~~~~~g~ 353 (557)
T PHA02713 280 NTMEYSVISTIPN-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN-----RCRFSLAVIDDT 353 (557)
T ss_pred CCCeEEECCCCCc-cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch-----hhceeEEEECCE
Confidence 3446776654443 111222445577888888832 356789999999999999999976 899999999999
Q ss_pred EEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccC--------
Q 014650 123 IYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFG-------- 194 (421)
Q Consensus 123 iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~-------- 194 (421)
||++||.+.. ..++++++|||.+++|+.+++||.+|..+++++++ ++|||+||.+....+.
T Consensus 354 IYviGG~~~~---------~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~--g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 354 IYAIGGQNGT---------NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLD--QYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred EEEECCcCCC---------CCCceEEEEECCCCeEEECCCCCcccccccEEEEC--CEEEEEeCCCcccccccccccccc
Confidence 9999997422 24678999999999999999999999999999999 9999999976321000
Q ss_pred ---CCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccC
Q 014650 195 ---AAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKK 271 (421)
Q Consensus 195 ---~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~ 271 (421)
......+++++|||++++|+.+++|+.+|..+.++++. ++|||+||.++.... ...+
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~--~~IYv~GG~~~~~~~---------~~~v--------- 482 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHK--DDIYVVCDIKDEKNV---------KTCI--------- 482 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCcccccCcEEEEC--CEEEEEeCCCCCCcc---------ceeE---------
Confidence 01123678999999999999999999999877665555 899999998643211 0112
Q ss_pred CcCCCCCCCC-CCceEecCccccccc----cccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCC
Q 014650 272 KTDDHDDGDR-GTWREVGDMWDEWER----SRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPE 341 (421)
Q Consensus 272 ~~~~~yd~~~-~~W~~~~~~~~~~~~----~~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 341 (421)
|.|||++ ++|+.+++|+.+... ...|+||++||. ++. ..+++||+.+++|+.+++...
T Consensus 483 ---e~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~-~~~--------~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 483 ---FRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCY-ESY--------MLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred ---EEecCCCCCCeeEccccCcccccceeEEECCEEEEEeee-cce--------eehhhcCcccccccchhhhcC
Confidence 4466776 699999999874211 123799999997 341 368999999999999976543
No 12
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=6.8e-33 Score=273.07 Aligned_cols=289 Identities=19% Similarity=0.252 Sum_probs=202.9
Q ss_pred HhHHhhhcCCcccccc--cccccCCceEEEeCCCC-----CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCC
Q 014650 49 RSWFLFFSSRTLVFDR--HKFNSQSDLLCIFPQDP-----SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGP 121 (421)
Q Consensus 49 k~W~~l~~~~~~~~~~--~~~~~~~~~~~~~g~~~-----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~ 121 (421)
.+|..+....+.+..| +.....++.+|++||.. ..+++++||+.+++|..++++...| ...|.+|+++++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P-~~~~~~~~~v~~~~ 229 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVP-HLSCLGVRMVSIGS 229 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCC-CCcccceEEEEECC
Confidence 4688776543332223 23445578899998832 2357999999999999886543211 12356888999999
Q ss_pred EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc---CCCccceEEEEEccCCEEEEEcCCccccccCCCCC
Q 014650 122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM---ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGS 198 (421)
Q Consensus 122 ~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 198 (421)
+|||+||.+.. ..++++|+||+.+++|++++++ |.+|..|++++++ ++|||+||.+ ...
T Consensus 230 ~lYvfGG~~~~---------~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~--~~iYv~GG~~-------~~~ 291 (470)
T PLN02193 230 TLYVFGGRDAS---------RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADE--ENVYVFGGVS-------ATA 291 (470)
T ss_pred EEEEECCCCCC---------CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEEC--CEEEEECCCC-------CCC
Confidence 99999997532 2478999999999999999888 7899999999999 9999999985 234
Q ss_pred ccceEEEEECCCCceEECCC---CCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCC
Q 014650 199 RISSVERYDVAKNEWVSMDE---MPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDD 275 (421)
Q Consensus 199 ~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~ 275 (421)
.++++++||+.+++|+.++. ++.+|..+.++++. ++||++||.++.. .+++++||+.++
T Consensus 292 ~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~--gkiyviGG~~g~~-----------~~dv~~yD~~t~----- 353 (470)
T PLN02193 292 RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQ--GKVWVVYGFNGCE-----------VDDVHYYDPVQD----- 353 (470)
T ss_pred CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEEC--CcEEEEECCCCCc-----------cCceEEEECCCC-----
Confidence 57889999999999999865 56778777666554 8999999976431 344666666665
Q ss_pred CCCCCCCCceEecCcc-ccccccc------cCeEEEEccccCCCceEE---EecCCceEEEeCCCCceeEecccCC---C
Q 014650 276 HDDGDRGTWREVGDMW-DEWERSR------IGKIVVMEDENRGRPEVF---MLDKFDILRYDMGLNRWLKETTIPE---I 342 (421)
Q Consensus 276 ~yd~~~~~W~~~~~~~-~~~~~~~------~g~i~v~GG~~~g~~~~~---~~~~~~v~~yd~~~~~W~~~~~~~~---~ 342 (421)
+|+.++.+. .+.+|.. .++||++||......... ....+++++||+.+++|+.+..++. +
T Consensus 354 -------~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~ 426 (470)
T PLN02193 354 -------KWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEET 426 (470)
T ss_pred -------EEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCC
Confidence 999997652 1223332 268999999731010000 0012679999999999999986642 2
Q ss_pred CCCCCceEE--EEeC--CeEEEEEeecCCCccccccccccccceeeEEEEEeCCc
Q 014650 343 RPCKKPLGF--IVLD--GELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRK 393 (421)
Q Consensus 343 ~~~r~~~~~--~~~~--~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 393 (421)
+.+|..++. +.+. +.|+++||.++.+ ...++++.|++.+
T Consensus 427 P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~------------~~~~D~~~~~~~~ 469 (470)
T PLN02193 427 PSSRGWTASTTGTIDGKKGLVMHGGKAPTN------------DRFDDLFFYGIDS 469 (470)
T ss_pred CCCCccccceeeEEcCCceEEEEcCCCCcc------------ccccceEEEecCC
Confidence 235555432 2333 4599999997543 2236899987654
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4.4e-33 Score=275.10 Aligned_cols=205 Identities=16% Similarity=0.238 Sum_probs=171.6
Q ss_pred CCceEEEeCCC---CCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCe
Q 014650 70 QSDLLCIFPQD---PSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDS 146 (421)
Q Consensus 70 ~~~~~~~~g~~---~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 146 (421)
.++.+|++||. ...+.+++|||.+++|..+++|+.+ |..+++++++++||++||.+. .++
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~-----r~~~~~v~~~~~iYviGG~~~------------~~s 332 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP-----RLYASGVPANNKLYVVGGLPN------------PTS 332 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-----hhcceEEEECCEEEEECCcCC------------CCc
Confidence 56778888873 2456789999999999999999976 888999999999999999631 256
Q ss_pred EEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCe
Q 014650 147 AFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGC 226 (421)
Q Consensus 147 v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~ 226 (421)
+++|||.+++|..+++||.+|..|++++++ ++|||+||.+. ..+++++|||.+++|+.+++|+.+|..+
T Consensus 333 ve~ydp~~n~W~~~~~l~~~r~~~~~~~~~--g~IYviGG~~~---------~~~~ve~ydp~~~~W~~~~~m~~~r~~~ 401 (480)
T PHA02790 333 VERWFHGDAAWVNMPSLLKPRCNPAVASIN--NVIYVIGGHSE---------TDTTTEYLLPNHDQWQFGPSTYYPHYKS 401 (480)
T ss_pred eEEEECCCCeEEECCCCCCCCcccEEEEEC--CEEEEecCcCC---------CCccEEEEeCCCCEEEeCCCCCCccccc
Confidence 899999999999999999999999999999 99999999742 1367999999999999999999999887
Q ss_pred eEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccccCeEEEEc
Q 014650 227 VGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVME 306 (421)
Q Consensus 227 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~g~i~v~G 306 (421)
+++++. ++||++||.
T Consensus 402 ~~~~~~--~~IYv~GG~--------------------------------------------------------------- 416 (480)
T PHA02790 402 CALVFG--RRLFLVGRN--------------------------------------------------------------- 416 (480)
T ss_pred eEEEEC--CEEEEECCc---------------------------------------------------------------
Confidence 665554 788888762
Q ss_pred cccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEE
Q 014650 307 DENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFI 386 (421)
Q Consensus 307 G~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v 386 (421)
+++||+++++|+.+++|+. +|..+++++++|+|||+||.++... ...+
T Consensus 417 ----------------~e~ydp~~~~W~~~~~m~~---~r~~~~~~v~~~~IYviGG~~~~~~-------------~~~v 464 (480)
T PHA02790 417 ----------------AEFYCESSNTWTLIDDPIY---PRDNPELIIVDNKLLLIGGFYRGSY-------------IDTI 464 (480)
T ss_pred ----------------eEEecCCCCcEeEcCCCCC---CccccEEEEECCEEEEECCcCCCcc-------------cceE
Confidence 2357778888888888876 4688899999999999999864321 2579
Q ss_pred EEEeCCcceeeEe
Q 014650 387 QIYHPRKKTWRYI 399 (421)
Q Consensus 387 ~~yd~~~~~W~~i 399 (421)
++|||++++|+..
T Consensus 465 e~Yd~~~~~W~~~ 477 (480)
T PHA02790 465 EVYNNRTYSWNIW 477 (480)
T ss_pred EEEECCCCeEEec
Confidence 9999999999764
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=9.7e-33 Score=260.62 Aligned_cols=266 Identities=17% Similarity=0.194 Sum_probs=185.4
Q ss_pred CCcceEEEEeCCEEEEEcccccCCCCC-CCCCCCCCCeEEEEe-Cc-cCceeeccccCCCccceEEEEEccCCEEEEEcC
Q 014650 110 SLCNFTSISLGPYIYLLGGSHFDARSF-PLDRPLPSDSAFRFN-FL-TFSWERIAPMISPRGSFACAAVRSLNQIIVAGG 186 (421)
Q Consensus 110 ~r~~~~~~~~~~~iyv~GG~~~~~~~~-~~~~~~~~~~v~~yd-~~-t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG 186 (421)
++.++.++++++.|||+||.+...... ..+.....+++++|+ +. +.+|..+++||.+|..+++++++ ++||++||
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~--~~lyviGG 80 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVE--NGIYYIGG 80 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEEC--CEEEEEcC
Confidence 467888999999999999986542110 012234567888885 33 23799999999999989999998 99999999
Q ss_pred CccccccCCCCCccceEEEEECCCCce----EECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechh
Q 014650 187 GSRHSLFGAAGSRISSVERYDVAKNEW----VSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDA 262 (421)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 262 (421)
.+ ....++++++||+.+++| +.+++||.+|..++++++. ++|||+||..... ..+++
T Consensus 81 ~~-------~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~--~~iYv~GG~~~~~----------~~~~v 141 (323)
T TIGR03548 81 SN-------SSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD--GTLYVGGGNRNGK----------PSNKS 141 (323)
T ss_pred CC-------CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC--CEEEEEeCcCCCc----------cCceE
Confidence 75 234578999999999998 7889999999887776665 8999999975332 22345
Q ss_pred eehhhhccCCcCCCCCCCCCCceEecCcccccccc------ccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEe
Q 014650 263 VVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS------RIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKE 336 (421)
Q Consensus 263 ~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~------~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~ 336 (421)
++||+.+ ++|+++++|+.. .|. ..++||++||. ++.. ..++++||+++++|+.+
T Consensus 142 ~~yd~~~------------~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~-~~~~------~~~~~~yd~~~~~W~~~ 201 (323)
T TIGR03548 142 YLFNLET------------QEWFELPDFPGE-PRVQPVCVKLQNELYVFGGG-SNIA------YTDGYKYSPKKNQWQKV 201 (323)
T ss_pred EEEcCCC------------CCeeECCCCCCC-CCCcceEEEECCEEEEEcCC-CCcc------ccceEEEecCCCeeEEC
Confidence 5555555 499999988642 122 23799999997 3321 14679999999999999
Q ss_pred cccCCCCCC--CC-ceEEEEeCCeEEEEEeecCCCccccccc-------------------cccccceeeEEEEEeCCcc
Q 014650 337 TTIPEIRPC--KK-PLGFIVLDGELYVMTVLKGSDLNETRRS-------------------QQHKRAGCLFIQIYHPRKK 394 (421)
Q Consensus 337 ~~~~~~~~~--r~-~~~~~~~~~~lyv~GG~~~~~~~~~~~~-------------------~~~~~~~~~~v~~yd~~~~ 394 (421)
++|+....+ +. ..+++..+++|||+||.++........- -.+.....+++++||++++
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 281 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG 281 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC
Confidence 887532112 22 3344556799999999875321000000 0011123468999999999
Q ss_pred eeeEecccCCCCCCCCccceeEEE
Q 014650 395 TWRYIFTKPPFPQPLDFGTAIMCT 418 (421)
Q Consensus 395 ~W~~i~~~p~~~~~~~~~~~~~~~ 418 (421)
+|+.++.+| ...+..++++++.
T Consensus 282 ~W~~~~~~p--~~~r~~~~~~~~~ 303 (323)
T TIGR03548 282 KWKSIGNSP--FFARCGAALLLTG 303 (323)
T ss_pred eeeEccccc--ccccCchheEEEC
Confidence 999988655 3356666665543
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.6e-32 Score=260.40 Aligned_cols=281 Identities=22% Similarity=0.316 Sum_probs=183.7
Q ss_pred CCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeC--ccCceeeccccC-CCccceEEEEE
Q 014650 99 LPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNF--LTFSWERIAPMI-SPRGSFACAAV 175 (421)
Q Consensus 99 l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~ 175 (421)
+|+||.+ |..+++++++++|||+||.. .+.+++||+ .+++|..+++|| .+|..++++++
T Consensus 1 ~~~lp~~-----~~~~~~~~~~~~vyv~GG~~-------------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~ 62 (346)
T TIGR03547 1 LPDLPVG-----FKNGTGAIIGDKVYVGLGSA-------------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI 62 (346)
T ss_pred CCCCCcc-----ccCceEEEECCEEEEEcccc-------------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEE
Confidence 4677765 77778888999999999962 357899995 678999999999 58999999999
Q ss_pred ccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC-CCCCCCCCeeEEEEccCCeEEEEeccCCCcccccccc
Q 014650 176 RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD-EMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLP 254 (421)
Q Consensus 176 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 254 (421)
+ ++|||+||...... ......++++|+||+.+++|+.++ ++|.+|..++++++.+ ++||++||.+.... .
T Consensus 63 ~--~~iYv~GG~~~~~~-~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~-g~IYviGG~~~~~~-~---- 133 (346)
T TIGR03547 63 D--GKLYVFGGIGKANS-EGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHN-GQAYFTGGVNKNIF-D---- 133 (346)
T ss_pred C--CEEEEEeCCCCCCC-CCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeC-CEEEEEcCcChHHH-H----
Confidence 9 99999999752100 001124688999999999999987 4566666665553444 89999999864210 0
Q ss_pred ceeeechheehhhhc-------------------cCCcCCCCCCCCCCceEecCcccc-cccc----ccCeEEEEccccC
Q 014650 255 VDEYYRDAVVMQLKK-------------------KKKTDDHDDGDRGTWREVGDMWDE-WERS----RIGKIVVMEDENR 310 (421)
Q Consensus 255 ~~~~~~~~~~yd~~~-------------------~~~~~~~yd~~~~~W~~~~~~~~~-~~~~----~~g~i~v~GG~~~ 310 (421)
..+.++..||... .....|+|||.+++|+.+++|+.. .... ..++||++||..
T Consensus 134 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~- 210 (346)
T TIGR03547 134 --GYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI- 210 (346)
T ss_pred --HHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee-
Confidence 0000011111100 001236677888899999998742 1111 237999999972
Q ss_pred CCceEEEecCCceEEEe--CCCCceeEecccCCCCC----CCCceEEEEeCCeEEEEEeecCCCccc-----cccccccc
Q 014650 311 GRPEVFMLDKFDILRYD--MGLNRWLKETTIPEIRP----CKKPLGFIVLDGELYVMTVLKGSDLNE-----TRRSQQHK 379 (421)
Q Consensus 311 g~~~~~~~~~~~v~~yd--~~~~~W~~~~~~~~~~~----~r~~~~~~~~~~~lyv~GG~~~~~~~~-----~~~~~~~~ 379 (421)
... ....+++.|| +++++|+++++|+.++. .+.++.+++++++|||+||.+...... .... ...
T Consensus 211 ~~~----~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~-~~~ 285 (346)
T TIGR03547 211 KPG----LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYA-HEG 285 (346)
T ss_pred CCC----ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccc-cCC
Confidence 211 1224565554 57789999999987531 123455788999999999976321000 0000 000
Q ss_pred cceeeEEEEEeCCcceeeEecccCCCCCCCCccceeEE
Q 014650 380 RAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMC 417 (421)
Q Consensus 380 ~~~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~ 417 (421)
......+++||+++++|+.++.+| .++..++++++
T Consensus 286 ~~~~~~~e~yd~~~~~W~~~~~lp---~~~~~~~~~~~ 320 (346)
T TIGR03547 286 LIKAWSSEVYALDNGKWSKVGKLP---QGLAYGVSVSW 320 (346)
T ss_pred CCceeEeeEEEecCCcccccCCCC---CCceeeEEEEc
Confidence 011246899999999999987655 44556665544
No 16
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.98 E-value=2.5e-31 Score=226.75 Aligned_cols=265 Identities=17% Similarity=0.299 Sum_probs=208.5
Q ss_pred CCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc-------------cCCCccceEEEEEc
Q 014650 110 SLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP-------------MISPRGSFACAAVR 176 (421)
Q Consensus 110 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~-------------~~~~r~~~~~~~~~ 176 (421)
.|.+|+++.++.+||-|||....... ....--+|.++|..+-+|.++++ .|..|++|+++.++
T Consensus 13 rRVNHAavaVG~riYSFGGYCsGedy----~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~ 88 (392)
T KOG4693|consen 13 RRVNHAAVAVGSRIYSFGGYCSGEDY----DAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQ 88 (392)
T ss_pred ccccceeeeecceEEecCCccccccc----ccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEc
Confidence 38899999999999999998643211 01123479999999999999876 24459999999999
Q ss_pred cCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC---CCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccc
Q 014650 177 SLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM---DEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVL 253 (421)
Q Consensus 177 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 253 (421)
+++|+-||.+ +.....+.++.||++++.|.+. +-+|.+|.+|++++.. +.+|||||+.....
T Consensus 89 --d~~yvWGGRN------D~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g--n~MyiFGGye~~a~----- 153 (392)
T KOG4693|consen 89 --DKAYVWGGRN------DDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG--NQMYIFGGYEEDAQ----- 153 (392)
T ss_pred --ceEEEEcCcc------CcccccceeeeeccccccccccceeeecCCccCCceeeEEC--cEEEEecChHHHHH-----
Confidence 9999999987 3456688999999999999874 4578999999988887 79999999976553
Q ss_pred cceeeechheehhhhccCCcCCCCCCCCCCceEecCccccc-ccc------ccCeEEEEccccCCCceEEEe----cCCc
Q 014650 254 PVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEW-ERS------RIGKIVVMEDENRGRPEVFML----DKFD 322 (421)
Q Consensus 254 ~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~------~~g~i~v~GG~~~g~~~~~~~----~~~~ 322 (421)
++..+++++|..+. +|+.+.....+. .|. ..+.+|++||..+... .+.. ..+.
T Consensus 154 ---~FS~d~h~ld~~Tm------------tWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~g-pfHs~~e~Yc~~ 217 (392)
T KOG4693|consen 154 ---RFSQDTHVLDFATM------------TWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESG-PFHSIHEQYCDT 217 (392)
T ss_pred ---hhhccceeEeccce------------eeeehhccCCCchhhhhhhhhhccceEEEeccccccCC-Cccchhhhhcce
Confidence 66777888888888 999997655431 222 2379999999852222 1111 1257
Q ss_pred eEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEeccc
Q 014650 323 ILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTK 402 (421)
Q Consensus 323 v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~ 402 (421)
|..+|..++.|..-.+-+..+..|..|++.+.|+++|+|||+++... .--+++++|||.+..|+.|...
T Consensus 218 i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln-----------~HfndLy~FdP~t~~W~~I~~~ 286 (392)
T KOG4693|consen 218 IMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN-----------VHFNDLYCFDPKTSMWSVISVR 286 (392)
T ss_pred eEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh-----------hhhcceeecccccchheeeecc
Confidence 88999999999998655554457889999999999999999987542 1226899999999999999988
Q ss_pred CCCCCCCCccceeEEEee
Q 014650 403 PPFPQPLDFGTAIMCTVR 420 (421)
Q Consensus 403 p~~~~~~~~~~~~~~~~~ 420 (421)
..-|.+|...|++|..-|
T Consensus 287 Gk~P~aRRRqC~~v~g~k 304 (392)
T KOG4693|consen 287 GKYPSARRRQCSVVSGGK 304 (392)
T ss_pred CCCCCcccceeEEEECCE
Confidence 888888999998887654
No 17
>PHA03098 kelch-like protein; Provisional
Probab=99.98 E-value=5.5e-31 Score=265.62 Aligned_cols=226 Identities=20% Similarity=0.280 Sum_probs=177.8
Q ss_pred cccCCceEEEeCCCC----CCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCC
Q 014650 67 FNSQSDLLCIFPQDP----SISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPL 142 (421)
Q Consensus 67 ~~~~~~~~~~~g~~~----~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 142 (421)
....++.+|++||.. ..++++.||+.+++|..+++|+.+ |.+|++++.+++||++||.+.. .
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-----R~~~~~~~~~~~lyv~GG~~~~---------~ 355 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP-----RKNPGVTVFNNRIYVIGGIYNS---------I 355 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-----cccceEEEECCEEEEEeCCCCC---------E
Confidence 344567888888732 345799999999999999999965 8899999999999999997522 2
Q ss_pred CCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC
Q 014650 143 PSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF 222 (421)
Q Consensus 143 ~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 222 (421)
..+++++||+.+++|+.+++||.+|..|++++++ ++||++||... ....++++++||+.+++|+.++++|.+
T Consensus 356 ~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~--~~iYv~GG~~~------~~~~~~~v~~yd~~t~~W~~~~~~p~~ 427 (534)
T PHA03098 356 SLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN--NLIYVIGGISK------NDELLKTVECFSLNTNKWSKGSPLPIS 427 (534)
T ss_pred ecceEEEEcCCCCceeeCCCcCcCCccceEEEEC--CEEEEECCcCC------CCcccceEEEEeCCCCeeeecCCCCcc
Confidence 4688999999999999999999999999999999 99999999742 234478999999999999999999999
Q ss_pred CCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccccccc----c
Q 014650 223 RAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS----R 298 (421)
Q Consensus 223 r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~----~ 298 (421)
|..+++++.. ++||++||.+..... ..++.+++ ||+++++|+.++.++.+.... .
T Consensus 428 r~~~~~~~~~--~~iyv~GG~~~~~~~-------~~~~~v~~------------yd~~~~~W~~~~~~~~~r~~~~~~~~ 486 (534)
T PHA03098 428 HYGGCAIYHD--GKIYVIGGISYIDNI-------KVYNIVES------------YNPVTNKWTELSSLNFPRINASLCIF 486 (534)
T ss_pred ccCceEEEEC--CEEEEECCccCCCCC-------cccceEEE------------ecCCCCceeeCCCCCcccccceEEEE
Confidence 9887666554 899999997653210 11222444 455555999999887642111 2
Q ss_pred cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCC
Q 014650 299 IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPE 341 (421)
Q Consensus 299 ~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 341 (421)
.+++|++||. .+.. ..+.+++||+.+++|+.++.+|.
T Consensus 487 ~~~iyv~GG~-~~~~-----~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 487 NNKIYVVGGD-KYEY-----YINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred CCEEEEEcCC-cCCc-----ccceeEEEeCCCCEEEecCCCcc
Confidence 3789999997 3221 13689999999999999987765
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.97 E-value=1.8e-30 Score=249.62 Aligned_cols=281 Identities=19% Similarity=0.259 Sum_probs=183.5
Q ss_pred cEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCc--cCceeeccccC-CCccceE
Q 014650 95 ACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFL--TFSWERIAPMI-SPRGSFA 171 (421)
Q Consensus 95 ~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~--t~~W~~~~~~~-~~r~~~~ 171 (421)
.+..+++||.+ +..+++++++++|||+||.. .+.+++||+. +++|..+++|| .+|..++
T Consensus 18 ~~~~l~~lP~~-----~~~~~~~~~~~~iyv~gG~~-------------~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~ 79 (376)
T PRK14131 18 NAEQLPDLPVP-----FKNGTGAIDNNTVYVGLGSA-------------GTSWYKLDLNAPSKGWTKIAAFPGGPREQAV 79 (376)
T ss_pred ecccCCCCCcC-----ccCCeEEEECCEEEEEeCCC-------------CCeEEEEECCCCCCCeEECCcCCCCCcccce
Confidence 46778899976 66678888999999999962 2458899986 57899999998 4899999
Q ss_pred EEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC-CCCCCCCeeEEEEccCCeEEEEeccCCCcc--
Q 014650 172 CAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE-MPRFRAGCVGFVAEESGEFWVMGGYGDSRT-- 248 (421)
Q Consensus 172 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~-- 248 (421)
+++++ ++|||+||..... .......++++++||+.+++|+.+++ +|.++.+|+++++.+ ++||++||.+....
T Consensus 80 ~v~~~--~~IYV~GG~~~~~-~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~-~~IYv~GG~~~~~~~~ 155 (376)
T PRK14131 80 AAFID--GKLYVFGGIGKTN-SEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHN-GKAYITGGVNKNIFDG 155 (376)
T ss_pred EEEEC--CEEEEEcCCCCCC-CCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeC-CEEEEECCCCHHHHHH
Confidence 99999 9999999975210 00012346889999999999999986 466666666665455 89999999864210
Q ss_pred -cccccc-------ce--------------eeechheehhhhccCCcCCCCCCCCCCceEecCcccccccc------ccC
Q 014650 249 -ISGVLP-------VD--------------EYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS------RIG 300 (421)
Q Consensus 249 -~~~~~~-------~~--------------~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~------~~g 300 (421)
+..... .. .+.+++ ++||+.+++|+.+++++.. .+. ..+
T Consensus 156 ~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v------------~~YD~~t~~W~~~~~~p~~-~~~~~a~v~~~~ 222 (376)
T PRK14131 156 YFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEV------------LSYDPSTNQWKNAGESPFL-GTAGSAVVIKGN 222 (376)
T ss_pred HHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceE------------EEEECCCCeeeECCcCCCC-CCCcceEEEECC
Confidence 000000 00 001223 4566666799999988752 121 237
Q ss_pred eEEEEccccCCCceEEEecCCce--EEEeCCCCceeEecccCCCCC---C--CCceEEEEeCCeEEEEEeecCCCcccc-
Q 014650 301 KIVVMEDENRGRPEVFMLDKFDI--LRYDMGLNRWLKETTIPEIRP---C--KKPLGFIVLDGELYVMTVLKGSDLNET- 372 (421)
Q Consensus 301 ~i~v~GG~~~g~~~~~~~~~~~v--~~yd~~~~~W~~~~~~~~~~~---~--r~~~~~~~~~~~lyv~GG~~~~~~~~~- 372 (421)
+||++||.. ... .+..++ ..||+++++|+.+.+||.++. + +..+.+++++++|||+||.+.......
T Consensus 223 ~iYv~GG~~-~~~----~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~ 297 (376)
T PRK14131 223 KLWLINGEI-KPG----LRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENY 297 (376)
T ss_pred EEEEEeeeE-CCC----cCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhh
Confidence 899999962 111 122344 456889999999999987531 1 122335678999999999763220000
Q ss_pred cccc---ccccceeeEEEEEeCCcceeeEecccCCCCCCCCccceeEEE
Q 014650 373 RRSQ---QHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCT 418 (421)
Q Consensus 373 ~~~~---~~~~~~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~~ 418 (421)
..++ .........+++||+++++|+.++.+ +.++..++++++.
T Consensus 298 ~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l---p~~r~~~~av~~~ 343 (376)
T PRK14131 298 QNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL---PQGLAYGVSVSWN 343 (376)
T ss_pred hcCCcccccCCcceeehheEEecCCcccccCcC---CCCccceEEEEeC
Confidence 0000 00001123578999999999987654 4556677666543
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=214.74 Aligned_cols=264 Identities=18% Similarity=0.276 Sum_probs=194.0
Q ss_pred cccCCceEEEeCCC--------CCCCccEEEeCCCCcEEECCC--------CCCCCCCCCCcceEEEEeCCEEEEEcccc
Q 014650 67 FNSQSDLLCIFPQD--------PSISSPFLFDAANRACRPLPP--------LPCNPSTYSLCNFTSISLGPYIYLLGGSH 130 (421)
Q Consensus 67 ~~~~~~~~~~~g~~--------~~~~~~~~~d~~~~~W~~l~~--------l~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 130 (421)
.......+|.|||- ...-++.+++..+-+|+.+++ .+-|--.+.|.+|+++.+++++||.||.+
T Consensus 19 avaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRN 98 (392)
T KOG4693|consen 19 AVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRN 98 (392)
T ss_pred eeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCcc
Confidence 34457889999981 234468899999999999977 22222236699999999999999999987
Q ss_pred cCCCCCCCCCCCCCCeEEEEeCccCceeec---cccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEE
Q 014650 131 FDARSFPLDRPLPSDSAFRFNFLTFSWERI---APMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYD 207 (421)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd 207 (421)
.+. ...+.++.|||.|++|.+. .-+|.+|-+|++|+++ +.+|++||+.+. .....+++.++|
T Consensus 99 D~e--------gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g--n~MyiFGGye~~-----a~~FS~d~h~ld 163 (392)
T KOG4693|consen 99 DDE--------GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG--NQMYIFGGYEED-----AQRFSQDTHVLD 163 (392)
T ss_pred Ccc--------cccceeeeeccccccccccceeeecCCccCCceeeEEC--cEEEEecChHHH-----HHhhhccceeEe
Confidence 544 3678899999999999875 3468899999999999 999999998643 557788999999
Q ss_pred CCCCceEECC---CCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccc--eeeechheehhhhccCCcCCCCCCCCC
Q 014650 208 VAKNEWVSMD---EMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPV--DEYYRDAVVMQLKKKKKTDDHDDGDRG 282 (421)
Q Consensus 208 ~~t~~W~~~~---~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~--~~~~~~~~~yd~~~~~~~~~~yd~~~~ 282 (421)
..|.+|+.+. ..|.=|..|++.++. +.+|||||...... .+++ +.+.+.+..+|..++
T Consensus 164 ~~TmtWr~~~Tkg~PprwRDFH~a~~~~--~~MYiFGGR~D~~g---pfHs~~e~Yc~~i~~ld~~T~------------ 226 (392)
T KOG4693|consen 164 FATMTWREMHTKGDPPRWRDFHTASVID--GMMYIFGGRSDESG---PFHSIHEQYCDTIMALDLATG------------ 226 (392)
T ss_pred ccceeeeehhccCCCchhhhhhhhhhcc--ceEEEeccccccCC---CccchhhhhcceeEEEecccc------------
Confidence 9999999874 334445557666665 89999999865431 0111 123333455555555
Q ss_pred CceEecCcc--cccccc-----ccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeC
Q 014650 283 TWREVGDMW--DEWERS-----RIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLD 355 (421)
Q Consensus 283 ~W~~~~~~~--~~~~~~-----~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~ 355 (421)
.|+..+.-+ ..+.|+ .+|++|++||. .|.-. ...++++.|||.+..|..+..-...+.+|.-.++++.+
T Consensus 227 aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGY-ng~ln---~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g 302 (392)
T KOG4693|consen 227 AWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGY-NGTLN---VHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSG 302 (392)
T ss_pred ccccCCCCCcCCCcccccceEEEcceEEEeccc-chhhh---hhhcceeecccccchheeeeccCCCCCcccceeEEEEC
Confidence 999985432 222332 23899999998 34311 12378999999999999996544333356778889999
Q ss_pred CeEEEEEeecC
Q 014650 356 GELYVMTVLKG 366 (421)
Q Consensus 356 ~~lyv~GG~~~ 366 (421)
+++|+|||..-
T Consensus 303 ~kv~LFGGTsP 313 (392)
T KOG4693|consen 303 GKVYLFGGTSP 313 (392)
T ss_pred CEEEEecCCCC
Confidence 99999999753
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=1.3e-27 Score=236.17 Aligned_cols=180 Identities=22% Similarity=0.323 Sum_probs=149.2
Q ss_pred EEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCC
Q 014650 116 SISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGA 195 (421)
Q Consensus 116 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 195 (421)
++..++.||++||.+.. ...+.+++|||.+++|..+++|+.+|..+++++++ ++||++||.+
T Consensus 267 ~~~~~~~lyviGG~~~~---------~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~--~~iYviGG~~------- 328 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN---------EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPAN--NKLYVVGGLP------- 328 (480)
T ss_pred eEEECCEEEEEcCCCCC---------CcCCeEEEEECCCCEEEECCCCCchhhcceEEEEC--CEEEEECCcC-------
Confidence 44589999999997432 24678999999999999999999999999999999 9999999964
Q ss_pred CCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCC
Q 014650 196 AGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDD 275 (421)
Q Consensus 196 ~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~ 275 (421)
. .+++++||+.+++|+.+++||.+|..++++++. ++||++||.++.
T Consensus 329 ~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~--g~IYviGG~~~~----------------------------- 374 (480)
T PHA02790 329 N---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASIN--NVIYVIGGHSET----------------------------- 374 (480)
T ss_pred C---CCceEEEECCCCeEEECCCCCCCCcccEEEEEC--CEEEEecCcCCC-----------------------------
Confidence 1 256999999999999999999999887766665 899999995210
Q ss_pred CCCCCCCCceEecCccccccccccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeC
Q 014650 276 HDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLD 355 (421)
Q Consensus 276 ~yd~~~~~W~~~~~~~~~~~~~~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~ 355 (421)
...+++|||.+++|+.+++|+. +|..+++++++
T Consensus 375 --------------------------------------------~~~ve~ydp~~~~W~~~~~m~~---~r~~~~~~~~~ 407 (480)
T PHA02790 375 --------------------------------------------DTTTEYLLPNHDQWQFGPSTYY---PHYKSCALVFG 407 (480)
T ss_pred --------------------------------------------CccEEEEeCCCCEEEeCCCCCC---ccccceEEEEC
Confidence 0346789999999999999887 45778889999
Q ss_pred CeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccCCCCCCCCccceeEEE
Q 014650 356 GELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTAIMCT 418 (421)
Q Consensus 356 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~~~~~ 418 (421)
|+|||+|| .+++|||++++|+.++++ +.++..++++++.
T Consensus 408 ~~IYv~GG---------------------~~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~ 446 (480)
T PHA02790 408 RRLFLVGR---------------------NAEFYCESSNTWTLIDDP---IYPRDNPELIIVD 446 (480)
T ss_pred CEEEEECC---------------------ceEEecCCCCcEeEcCCC---CCCccccEEEEEC
Confidence 99999998 257899999999998754 4556777766654
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.93 E-value=3.1e-25 Score=200.31 Aligned_cols=260 Identities=16% Similarity=0.203 Sum_probs=191.5
Q ss_pred CCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec--cccCCCccceEEEEEccCCEEEEE
Q 014650 109 YSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI--APMISPRGSFACAAVRSLNQIIVA 184 (421)
Q Consensus 109 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~~~iyv~ 184 (421)
.+|.++++.+- .+.|++|||.-.++. .....+++|.||..+++|+.+ +..|.||+.|.++++-+ +.+|++
T Consensus 65 spRsn~sl~~nPekeELilfGGEf~ngq-----kT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s-~~l~~f 138 (521)
T KOG1230|consen 65 SPRSNPSLFANPEKEELILFGGEFYNGQ-----KTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS-NILWLF 138 (521)
T ss_pred CCCCCcceeeccCcceeEEecceeecce-----eEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEecc-CeEEEe
Confidence 44888887765 568999999876653 235678999999999999987 44578899999999987 899999
Q ss_pred cCCccccccCCCCCccceEEEEECCCCceEEC--CCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechh
Q 014650 185 GGGSRHSLFGAAGSRISSVERYDVAKNEWVSM--DEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDA 262 (421)
Q Consensus 185 GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 262 (421)
||.-.... ....-..+++|+||..+++|+++ +.-|.||.+|..++.. .+|.+|||+.... ..+ .||+++
T Consensus 139 GGEfaSPn-q~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK--~~lilFGGFhd~n--r~y----~YyNDv 209 (521)
T KOG1230|consen 139 GGEFASPN-QEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK--RQLILFGGFHDSN--RDY----IYYNDV 209 (521)
T ss_pred ccccCCcc-hhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEee--eeEEEEcceecCC--Cce----EEeeee
Confidence 99742210 00112267899999999999997 4568999999999888 7999999985542 222 799999
Q ss_pred eehhhhccCCcCCCCCCCCCCceEecCcc-cccccccc-------CeEEEEccccCCC---ceEEEecCCceEEEeCCC-
Q 014650 263 VVMQLKKKKKTDDHDDGDRGTWREVGDMW-DEWERSRI-------GKIVVMEDENRGR---PEVFMLDKFDILRYDMGL- 330 (421)
Q Consensus 263 ~~yd~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~-------g~i~v~GG~~~g~---~~~~~~~~~~v~~yd~~~- 330 (421)
++||+.+- +|+++.+.. .|.+|+.+ |.|++.||+.... ..-.-...++++..++..
T Consensus 210 y~FdLdty------------kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~ 277 (521)
T KOG1230|consen 210 YAFDLDTY------------KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDG 277 (521)
T ss_pred EEEeccce------------eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcC
Confidence 99999987 999997622 13455543 7899999984000 000001236788998888
Q ss_pred ----CceeEecccCCCCCCCCceEEEEeC-CeEEEEEeecCCC-ccccccccccccceeeEEEEEeCCcceeeEec
Q 014650 331 ----NRWLKETTIPEIRPCKKPLGFIVLD-GELYVMTVLKGSD-LNETRRSQQHKRAGCLFIQIYHPRKKTWRYIF 400 (421)
Q Consensus 331 ----~~W~~~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~-~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~ 400 (421)
-+|+.+.+...++.+|.++++++.. ++-|.|||..... --+ .--+.+.++++.||...++|...+
T Consensus 278 ~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeE-----sl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 278 REDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEE-----SLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred CCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccch-----hhhhhhhhhhhheecccchhhHhh
Confidence 6899998877766789999988775 5999999975421 000 012455679999999999998763
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.93 E-value=9.1e-24 Score=207.78 Aligned_cols=253 Identities=17% Similarity=0.248 Sum_probs=198.5
Q ss_pred CCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCC--eEEEEeCccCceeecc---ccCCCccceEEEEEccCCEEEE
Q 014650 109 YSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSD--SAFRFNFLTFSWERIA---PMISPRGSFACAAVRSLNQIIV 183 (421)
Q Consensus 109 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~--~v~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~~~iyv 183 (421)
.+|..|+++.+++++|||||...... .. ++|++|..+..|.... ..|.+|++|.+++++ ++||+
T Consensus 59 ~~R~~hs~~~~~~~~~vfGG~~~~~~---------~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~--~~l~l 127 (482)
T KOG0379|consen 59 IPRAGHSAVLIGNKLYVFGGYGSGDR---------LTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG--DKLYL 127 (482)
T ss_pred chhhccceeEECCEEEEECCCCCCCc---------cccceeEEeecCCcccccccccCCCCCcccceeEEEEC--CeEEE
Confidence 34999999999999999999864432 22 6999999999998764 457889999999999 99999
Q ss_pred EcCCccccccCCCCCccceEEEEECCCCceEEC---CCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeec
Q 014650 184 AGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM---DEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYR 260 (421)
Q Consensus 184 ~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 260 (421)
+||.+. .....++++.||+.|++|..+ ...|.+|.+|+++++. ++||||||.+... ...+
T Consensus 128 fGG~~~------~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g--~~l~vfGG~~~~~---------~~~n 190 (482)
T KOG0379|consen 128 FGGTDK------KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG--TKLVVFGGIGGTG---------DSLN 190 (482)
T ss_pred EccccC------CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC--CEEEEECCccCcc---------ccee
Confidence 999862 245588999999999999986 3468899999887776 8999999998765 3567
Q ss_pred hheehhhhccCCcCCCCCCCCCCceEecCccc-ccccccc------CeEEEEccccCCCceEEEecCCceEEEeCCCCce
Q 014650 261 DAVVMQLKKKKKTDDHDDGDRGTWREVGDMWD-EWERSRI------GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRW 333 (421)
Q Consensus 261 ~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~------g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W 333 (421)
++++||+++. +|.++..... +.+|..+ ++++++||...+.. ..++++.+|..+.+|
T Consensus 191 dl~i~d~~~~------------~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~-----~l~D~~~ldl~~~~W 253 (482)
T KOG0379|consen 191 DLHIYDLETS------------TWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDV-----YLNDVHILDLSTWEW 253 (482)
T ss_pred eeeeeccccc------------cceecccCCCCCCCCCCceEEEECCeEEEEeccccCCc-----eecceEeeeccccee
Confidence 7888888777 9999965432 2244443 57888888721221 238999999999999
Q ss_pred eEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccC-CCCCCCCcc
Q 014650 334 LKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP-PFPQPLDFG 412 (421)
Q Consensus 334 ~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p-~~~~~~~~~ 412 (421)
..+......+.+|..|..+..++.++++||...... ....+++.||.+++.|.++...+ ..+.++..+
T Consensus 254 ~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~-----------~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~ 322 (482)
T KOG0379|consen 254 KLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQ-----------EPLGDLYGLDLETLVWSKVESVGVVRPSPRLGH 322 (482)
T ss_pred eeccccCCCCCCcceeeeEEECCEEEEEcCCccccc-----------ccccccccccccccceeeeeccccccccccccc
Confidence 988766665568899999999999999999765310 13368999999999999998777 566666666
Q ss_pred ceeEE
Q 014650 413 TAIMC 417 (421)
Q Consensus 413 ~~~~~ 417 (421)
+++..
T Consensus 323 ~~~~~ 327 (482)
T KOG0379|consen 323 AAELI 327 (482)
T ss_pred cceee
Confidence 65544
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.90 E-value=4.1e-22 Score=196.15 Aligned_cols=244 Identities=18% Similarity=0.298 Sum_probs=184.6
Q ss_pred cCCceEEEeCCCC---CCC--ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCC
Q 014650 69 SQSDLLCIFPQDP---SIS--SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLP 143 (421)
Q Consensus 69 ~~~~~~~~~g~~~---~~~--~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 143 (421)
...+.+++|||.. ... +++.||..+..|.....-...+ .+|.+|++++++++||+|||.+... ..
T Consensus 68 ~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p--~~r~g~~~~~~~~~l~lfGG~~~~~--------~~ 137 (482)
T KOG0379|consen 68 LIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP--SPRYGHSLSAVGDKLYLFGGTDKKY--------RN 137 (482)
T ss_pred EECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC--CcccceeEEEECCeEEEEccccCCC--------CC
Confidence 3477788888732 222 5999999999998764433222 5699999999999999999987522 24
Q ss_pred CCeEEEEeCccCceeeccc---cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC---C
Q 014650 144 SDSAFRFNFLTFSWERIAP---MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM---D 217 (421)
Q Consensus 144 ~~~v~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~---~ 217 (421)
.++++.||+.|++|..+.+ +|.+|.+|++++++ .++||+||... .....+++++||+++.+|.++ +
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g--~~l~vfGG~~~------~~~~~ndl~i~d~~~~~W~~~~~~g 209 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG--TKLVVFGGIGG------TGDSLNDLHIYDLETSTWSELDTQG 209 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC--CEEEEECCccC------cccceeeeeeeccccccceecccCC
Confidence 7899999999999998754 57889999999999 99999999863 233799999999999999986 5
Q ss_pred CCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccc-cccc
Q 014650 218 EMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWD-EWER 296 (421)
Q Consensus 218 ~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~~ 296 (421)
+.|.||++|+++++. ++++++||.+... .++++++.+|+.+. +|..+..... +.+|
T Consensus 210 ~~P~pR~gH~~~~~~--~~~~v~gG~~~~~---------~~l~D~~~ldl~~~------------~W~~~~~~g~~p~~R 266 (482)
T KOG0379|consen 210 EAPSPRYGHAMVVVG--NKLLVFGGGDDGD---------VYLNDVHILDLSTW------------EWKLLPTGGDLPSPR 266 (482)
T ss_pred CCCCCCCCceEEEEC--CeEEEEeccccCC---------ceecceEeeecccc------------eeeeccccCCCCCCc
Confidence 678899999888887 7899999987332 67888999999888 9997754332 2244
Q ss_pred ccc------CeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccC-CCCCCCCceEEEEeCCe
Q 014650 297 SRI------GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIP-EIRPCKKPLGFIVLDGE 357 (421)
Q Consensus 297 ~~~------g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~r~~~~~~~~~~~ 357 (421)
..+ .+++++||...+.. ....+++.||.+++.|..+.... ....+|..++.+.....
T Consensus 267 ~~h~~~~~~~~~~l~gG~~~~~~----~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (482)
T KOG0379|consen 267 SGHSLTVSGDHLLLFGGGTDPKQ----EPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDEL 330 (482)
T ss_pred ceeeeEEECCEEEEEcCCccccc----ccccccccccccccceeeeeccccccccccccccceeeccC
Confidence 443 47888888621111 12378899999999999997766 33335666665555433
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=8.8e-23 Score=184.51 Aligned_cols=290 Identities=16% Similarity=0.222 Sum_probs=195.4
Q ss_pred cCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccccccc--cccCCceEEEeCCC-------CCCCccEEEe
Q 014650 20 LIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFDRHK--FNSQSDLLCIFPQD-------PSISSPFLFD 90 (421)
Q Consensus 20 ~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~~~~~--~~~~~~~~~~~g~~-------~~~~~~~~~d 90 (421)
+.+.|.++.+.+||..+..+...... .....+.-++.+.. ......-+++|||. -..++++.||
T Consensus 32 l~~e~de~~i~~~iq~~eaK~~e~~~-------e~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn 104 (521)
T KOG1230|consen 32 LNEELDEADIAEIIQSLEAKQIEHVV-------ETSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYN 104 (521)
T ss_pred cCcccchHHHHHHHHhhhhhccceee-------eccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEe
Confidence 44456677777788777766542111 11123333334443 23445578888872 1457899999
Q ss_pred CCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc--cCCCc
Q 014650 91 AANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP--MISPR 167 (421)
Q Consensus 91 ~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~--~~~~r 167 (421)
...+.|+.+.....| .+|++|.+++. .|.+|+|||....... ......+++|.||..|++|+++.. -|.||
T Consensus 105 ~k~~eWkk~~spn~P---~pRsshq~va~~s~~l~~fGGEfaSPnq---~qF~HYkD~W~fd~~trkweql~~~g~PS~R 178 (521)
T KOG1230|consen 105 TKKNEWKKVVSPNAP---PPRSSHQAVAVPSNILWLFGGEFASPNQ---EQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR 178 (521)
T ss_pred ccccceeEeccCCCc---CCCccceeEEeccCeEEEeccccCCcch---hhhhhhhheeeeeeccchheeeccCCCCCCC
Confidence 999999988443333 34899988877 4899999997543210 112346799999999999999854 47889
Q ss_pred cceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC---CCCCCCCeeEEEEccCCeEEEEeccC
Q 014650 168 GSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE---MPRFRAGCVGFVAEESGEFWVMGGYG 244 (421)
Q Consensus 168 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~r~~~~~~~~~~~~~iyv~GG~~ 244 (421)
++|-+++.. .+|+++||.... .....+.+++++||..+-+|+.+.+ -|.||++|..++.-+ +.|||.||+.
T Consensus 179 SGHRMvawK--~~lilFGGFhd~---nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpq-g~i~vyGGYs 252 (521)
T KOG1230|consen 179 SGHRMVAWK--RQLILFGGFHDS---NRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQ-GGIVVYGGYS 252 (521)
T ss_pred ccceeEEee--eeEEEEcceecC---CCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCC-CcEEEEcchh
Confidence 999999999 999999998632 1233568999999999999999854 478999987666644 8999999986
Q ss_pred CCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcc-cccccccc-------CeEEEEccccCCC---c
Q 014650 245 DSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMW-DEWERSRI-------GKIVVMEDENRGR---P 313 (421)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~-------g~i~v~GG~~~g~---~ 313 (421)
....-.. +--+....+++.+++..+ +-..=.|+.+.+.. .|.+|+.. ++.+.+||..+-. .
T Consensus 253 K~~~kK~-~dKG~~hsDmf~L~p~~~-------~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeE 324 (521)
T KOG1230|consen 253 KQRVKKD-VDKGTRHSDMFLLKPEDG-------REDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEE 324 (521)
T ss_pred Hhhhhhh-hhcCceeeeeeeecCCcC-------CCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccch
Confidence 5332111 111245667888888774 11123789885542 33355543 6889999975200 0
Q ss_pred eEEEecCCceEEEeCCCCceeEe
Q 014650 314 EVFMLDKFDILRYDMGLNRWLKE 336 (421)
Q Consensus 314 ~~~~~~~~~v~~yd~~~~~W~~~ 336 (421)
.+-....++++.||...++|.+.
T Consensus 325 sl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 325 SLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred hhhhhhhhhhhheecccchhhHh
Confidence 01111247899999999999986
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=1.6e-22 Score=187.03 Aligned_cols=279 Identities=17% Similarity=0.223 Sum_probs=198.9
Q ss_pred hHHhhhcCCc-cccccc--ccccCCceEEEeCCC--CCCCccEEEeCCCCcEEEC---CCCCCCCCCCCCcceEEEEeCC
Q 014650 50 SWFLFFSSRT-LVFDRH--KFNSQSDLLCIFPQD--PSISSPFLFDAANRACRPL---PPLPCNPSTYSLCNFTSISLGP 121 (421)
Q Consensus 50 ~W~~l~~~~~-~~~~~~--~~~~~~~~~~~~g~~--~~~~~~~~~d~~~~~W~~l---~~l~~~~~~~~r~~~~~~~~~~ 121 (421)
+|+.+..+.. .++.|+ +....+.++++|||. ...+++..||..+++|..- .++|.+ ...|+.+..+.
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpg-----cAA~GfvcdGt 92 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPG-----CAAFGFVCDGT 92 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCc-----hhhcceEecCc
Confidence 5766654432 222222 245567888888874 4677899999999999753 355543 56788889999
Q ss_pred EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc-------cCCCccceEEEEEccCCEEEEEcCCccccccC
Q 014650 122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP-------MISPRGSFACAAVRSLNQIIVAGGGSRHSLFG 194 (421)
Q Consensus 122 ~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~-------~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~ 194 (421)
+||+|||+...+. .++++|......-.|+++.+ +|.||.+|+...++ ++-|+|||........
T Consensus 93 rilvFGGMvEYGk--------YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g--nKcYlFGGLaNdseDp 162 (830)
T KOG4152|consen 93 RILVFGGMVEYGK--------YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG--NKCYLFGGLANDSEDP 162 (830)
T ss_pred eEEEEccEeeecc--------ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec--cEeEEeccccccccCc
Confidence 9999999987764 67777776677777888743 57789999999999 9999999975332111
Q ss_pred --CCCCccceEEEEECCCCc----eEEC---CCCCCCCCCeeEEEEcc----CCeEEEEeccCCCccccccccceeeech
Q 014650 195 --AAGSRISSVERYDVAKNE----WVSM---DEMPRFRAGCVGFVAEE----SGEFWVMGGYGDSRTISGVLPVDEYYRD 261 (421)
Q Consensus 195 --~~~~~~~~~~~yd~~t~~----W~~~---~~~~~~r~~~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 261 (421)
.-..+++++++.+..-+. |... +.+|.||..|.++++.. ..++||+||.++ ..+.+
T Consensus 163 knNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-----------~RLgD 231 (830)
T KOG4152|consen 163 KNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-----------CRLGD 231 (830)
T ss_pred ccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-----------ccccc
Confidence 123568888888877543 8753 67899999999888832 157999999877 45678
Q ss_pred heehhhhccCCcCCCCCCCCCCceEecCc-ccccccccc------CeEEEEcccc---CCC-------ceEEEecCCceE
Q 014650 262 AVVMQLKKKKKTDDHDDGDRGTWREVGDM-WDEWERSRI------GKIVVMEDEN---RGR-------PEVFMLDKFDIL 324 (421)
Q Consensus 262 ~~~yd~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~------g~i~v~GG~~---~g~-------~~~~~~~~~~v~ 324 (421)
+|.+|+++- .|.+..-- ..+.+|+.+ +++|++||.. ... .+.. -++.+-
T Consensus 232 LW~Ldl~Tl------------~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWk--CTssl~ 297 (830)
T KOG4152|consen 232 LWTLDLDTL------------TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWK--CTSSLA 297 (830)
T ss_pred eeEEeccee------------ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceee--ecccee
Confidence 899999888 99887422 112245544 6999999975 110 0011 135677
Q ss_pred EEeCCCCceeEec--ccCC--CCCCCCceEEEEeCCeEEEEEeecCCC
Q 014650 325 RYDMGLNRWLKET--TIPE--IRPCKKPLGFIVLDGELYVMTVLKGSD 368 (421)
Q Consensus 325 ~yd~~~~~W~~~~--~~~~--~~~~r~~~~~~~~~~~lyv~GG~~~~~ 368 (421)
.+|..+..|+.+- .+-+ .+..|.+|+++.+++++|+-.|++|..
T Consensus 298 clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYr 345 (830)
T KOG4152|consen 298 CLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYR 345 (830)
T ss_pred eeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhh
Confidence 8899999999972 1111 122789999999999999999999875
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=3.7e-20 Score=171.56 Aligned_cols=289 Identities=15% Similarity=0.188 Sum_probs=192.9
Q ss_pred CcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec---cccCCCccce
Q 014650 94 RACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI---APMISPRGSF 170 (421)
Q Consensus 94 ~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~ 170 (421)
-+|+.+.....| ..-+|.+|.++++...|.||||-+. ...+++++||..+|+|-.- .+.|.+.+.|
T Consensus 17 ~rWrrV~~~tGP-vPrpRHGHRAVaikELiviFGGGNE----------GiiDELHvYNTatnqWf~PavrGDiPpgcAA~ 85 (830)
T KOG4152|consen 17 VRWRRVQQSTGP-VPRPRHGHRAVAIKELIVIFGGGNE----------GIIDELHVYNTATNQWFAPAVRGDIPPGCAAF 85 (830)
T ss_pred cceEEEecccCC-CCCccccchheeeeeeEEEecCCcc----------cchhhhhhhccccceeecchhcCCCCCchhhc
Confidence 468776443222 0134899999999999999999542 3678899999999999643 5678888889
Q ss_pred EEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC-------CCCCCCCCeeEEEEccCCeEEEEecc
Q 014650 171 ACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD-------EMPRFRAGCVGFVAEESGEFWVMGGY 243 (421)
Q Consensus 171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~~~iyv~GG~ 243 (421)
+.+..+ .+||+|||..+ -+++.++++.+-...-.|+++. +.|-||-+|+-.++. +|-|+|||.
T Consensus 86 GfvcdG--trilvFGGMvE------YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g--nKcYlFGGL 155 (830)
T KOG4152|consen 86 GFVCDG--TRILVFGGMVE------YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG--NKCYLFGGL 155 (830)
T ss_pred ceEecC--ceEEEEccEee------eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec--cEeEEeccc
Confidence 999988 99999999763 3566666544444444566663 356788888655555 899999997
Q ss_pred CCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEe---cCcccccccccc------------CeEEEEccc
Q 014650 244 GDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREV---GDMWDEWERSRI------------GKIVVMEDE 308 (421)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~---~~~~~~~~~~~~------------g~i~v~GG~ 308 (421)
.++.+- .--+.-.|+++++..++..++. --.|... ..+|. +|..+ .++|++||.
T Consensus 156 aNdseD-pknNvPrYLnDlY~leL~~Gsg--------vv~W~ip~t~Gv~P~--pRESHTAViY~eKDs~~skmvvyGGM 224 (830)
T KOG4152|consen 156 ANDSED-PKNNVPRYLNDLYILELRPGSG--------VVAWDIPITYGVLPP--PRESHTAVIYTEKDSKKSKMVVYGGM 224 (830)
T ss_pred cccccC-cccccchhhcceEEEEeccCCc--------eEEEecccccCCCCC--CcccceeEEEEeccCCcceEEEEccc
Confidence 543321 0011125667777776654311 1157655 22332 34433 478999987
Q ss_pred cCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccc-cceeeEEE
Q 014650 309 NRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHK-RAGCLFIQ 387 (421)
Q Consensus 309 ~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~-~~~~~~v~ 387 (421)
.|. +..++|..|.++..|.+...-..++.+|.-|++..+++++|||||+---.--..-..++++ ..-.+.+-
T Consensus 225 -~G~------RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~ 297 (830)
T KOG4152|consen 225 -SGC------RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLA 297 (830)
T ss_pred -ccc------cccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeecccee
Confidence 454 3489999999999999975444444478999999999999999997321100000011111 23345778
Q ss_pred EEeCCcceeeEecc--cC--CCCCCCCccceeEEEeeC
Q 014650 388 IYHPRKKTWRYIFT--KP--PFPQPLDFGTAIMCTVRL 421 (421)
Q Consensus 388 ~yd~~~~~W~~i~~--~p--~~~~~~~~~~~~~~~~~~ 421 (421)
++|..+.+|..+.. +- --|..|..|||+.+.-||
T Consensus 298 clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRl 335 (830)
T KOG4152|consen 298 CLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRL 335 (830)
T ss_pred eeeecchheeeeeeccccccccccccccceeEEeccEE
Confidence 89999999988741 11 135678899999888765
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.80 E-value=7.6e-18 Score=150.80 Aligned_cols=277 Identities=13% Similarity=0.195 Sum_probs=184.0
Q ss_pred hhhcCCcccccccccccCCceEEEeCCCCCCCccEEEeCC--CCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccc
Q 014650 53 LFFSSRTLVFDRHKFNSQSDLLCIFPQDPSISSPFLFDAA--NRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSH 130 (421)
Q Consensus 53 ~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~--~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 130 (421)
+++..|...+-- .-+.....+|++-| +.-..++..|.. ...|++++.+|.. .|....+++++++||||||..
T Consensus 29 ~lPdlPvg~KnG-~Ga~ig~~~YVGLG-s~G~afy~ldL~~~~k~W~~~a~FpG~----~rnqa~~a~~~~kLyvFgG~G 102 (381)
T COG3055 29 QLPDLPVGFKNG-AGALIGDTVYVGLG-SAGTAFYVLDLKKPGKGWTKIADFPGG----ARNQAVAAVIGGKLYVFGGYG 102 (381)
T ss_pred cCCCCCcccccc-ccceecceEEEEec-cCCccceehhhhcCCCCceEcccCCCc----ccccchheeeCCeEEEeeccc
Confidence 344444433332 22334446666544 233457777765 4789999999975 488889999999999999986
Q ss_pred cCCCCCCCCCCCCCCeEEEEeCccCceeecccc-CCCccceEEEEEccCCEEEEEcCCccccccC---------------
Q 014650 131 FDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM-ISPRGSFACAAVRSLNQIIVAGGGSRHSLFG--------------- 194 (421)
Q Consensus 131 ~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~--------------- 194 (421)
.... ......+++|+|||.+|+|.++... |..-..+.++.++. .+||++||.+..- |+
T Consensus 103 k~~~----~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~-~~i~f~GGvn~~i-f~~yf~dv~~a~~d~~~ 176 (381)
T COG3055 103 KSVS----SSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNG-TKIYFFGGVNQNI-FNGYFEDVGAAGKDKEA 176 (381)
T ss_pred cCCC----CCceEeeeeEEecCCCChhheeccccccccccceeEecCC-ceEEEEccccHHh-hhhhHHhhhhhcccHHH
Confidence 5432 2345778999999999999998653 56677888888882 4999999975321 11
Q ss_pred -------------CCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeech
Q 014650 195 -------------AAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRD 261 (421)
Q Consensus 195 -------------~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 261 (421)
........+..|+|.++.|+.+...|..-...++++..+ +++.++.|.-... +++.+
T Consensus 177 ~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~-n~~~lInGEiKpG-----LRt~~---- 246 (381)
T COG3055 177 VDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKG-NKLTLINGEIKPG-----LRTAE---- 246 (381)
T ss_pred HHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecC-CeEEEEcceecCC-----ccccc----
Confidence 112335568889999999999987776544444555555 8899988864433 11112
Q ss_pred heehhhhccCCcCCCCCCCCCCceEecCcccccccc-----------ccCeEEEEcccc-CC------CceEEEec----
Q 014650 262 AVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERS-----------RIGKIVVMEDEN-RG------RPEVFMLD---- 319 (421)
Q Consensus 262 ~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~-----------~~g~i~v~GG~~-~g------~~~~~~~~---- 319 (421)
+.+++...+ .-+|..++++|.+.... .++.+++.||.. .| ...+|..+
T Consensus 247 ~k~~~~~~~----------~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K 316 (381)
T COG3055 247 VKQADFGGD----------NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSK 316 (381)
T ss_pred eeEEEeccC----------ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhh
Confidence 334444322 23899998887642211 125677777764 11 11122221
Q ss_pred --CCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecC
Q 014650 320 --KFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKG 366 (421)
Q Consensus 320 --~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~ 366 (421)
..+|+.+| .+.|+.+..||.++ .....+..+++||++||.+.
T Consensus 317 ~w~~~Vy~~d--~g~Wk~~GeLp~~l---~YG~s~~~nn~vl~IGGE~~ 360 (381)
T COG3055 317 SWNSEVYIFD--NGSWKIVGELPQGL---AYGVSLSYNNKVLLIGGETS 360 (381)
T ss_pred hhhceEEEEc--CCceeeecccCCCc---cceEEEecCCcEEEEccccC
Confidence 35788887 88899999999853 55567788999999999863
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.57 E-value=2.5e-13 Score=122.09 Aligned_cols=284 Identities=19% Similarity=0.274 Sum_probs=171.5
Q ss_pred EECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCcc--CceeeccccCCC-ccceEEE
Q 014650 97 RPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLT--FSWERIAPMISP-RGSFACA 173 (421)
Q Consensus 97 ~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~-r~~~~~~ 173 (421)
.++|++|.+ .-+-+-+.+++.+||-=|. .-...+..|... ..|++++.+|.+ |-....+
T Consensus 28 ~~lPdlPvg-----~KnG~Ga~ig~~~YVGLGs-------------~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a 89 (381)
T COG3055 28 GQLPDLPVG-----FKNGAGALIGDTVYVGLGS-------------AGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAA 89 (381)
T ss_pred ccCCCCCcc-----ccccccceecceEEEEecc-------------CCccceehhhhcCCCCceEcccCCCcccccchhe
Confidence 346778875 2222555678899998774 234567777644 579999999865 8888889
Q ss_pred EEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCC-CCCCCCeeEEEEccCCeEEEEeccCCCcc---c
Q 014650 174 AVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM-PRFRAGCVGFVAEESGEFWVMGGYGDSRT---I 249 (421)
Q Consensus 174 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~~~~~iyv~GG~~~~~~---~ 249 (421)
+++ ++|||+||...... ...+..+++++|||.+++|+.+... |..-.++.++...+ .+||++||++.... +
T Consensus 90 ~~~--~kLyvFgG~Gk~~~--~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~-~~i~f~GGvn~~if~~yf 164 (381)
T COG3055 90 VIG--GKLYVFGGYGKSVS--SSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNG-TKIYFFGGVNQNIFNGYF 164 (381)
T ss_pred eeC--CeEEEeeccccCCC--CCceEeeeeEEecCCCChhheeccccccccccceeEecCC-ceEEEEccccHHhhhhhH
Confidence 999 99999999753311 1245588999999999999988543 44444455555553 59999999865431 0
Q ss_pred ccc---ccceeeechh--eehhhhcc----CCcCCCCCCCCCCceEecCcccccccc-----ccCeEEEEcccc-CCCce
Q 014650 250 SGV---LPVDEYYRDA--VVMQLKKK----KKTDDHDDGDRGTWREVGDMWDEWERS-----RIGKIVVMEDEN-RGRPE 314 (421)
Q Consensus 250 ~~~---~~~~~~~~~~--~~yd~~~~----~~~~~~yd~~~~~W~~~~~~~~~~~~~-----~~g~i~v~GG~~-~g~~~ 314 (421)
..+ -...+-++.+ ..||.... -.-...|||++++|+.+...|--.... ..+++.++.|.+ .|
T Consensus 165 ~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG--- 241 (381)
T COG3055 165 EDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG--- 241 (381)
T ss_pred HhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCC---
Confidence 000 0000001111 01221111 011257899999999997555321111 124677777764 22
Q ss_pred EEEecCCceEEEeCC--CCceeEecccCCCCCCC-Cc---eEEEEeCCeEEEEEeecCCCcc-----ccccccc-cccce
Q 014650 315 VFMLDKFDILRYDMG--LNRWLKETTIPEIRPCK-KP---LGFIVLDGELYVMTVLKGSDLN-----ETRRSQQ-HKRAG 382 (421)
Q Consensus 315 ~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~r-~~---~~~~~~~~~lyv~GG~~~~~~~-----~~~~~~~-~~~~~ 382 (421)
+++..+..++.. .-+|..+.++|.+.... .+ +-.-..++.+.|.||.+-.... .-...++ ..+..
T Consensus 242 ---LRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w 318 (381)
T COG3055 242 ---LRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSW 318 (381)
T ss_pred ---ccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhh
Confidence 234667777665 45899998887754221 11 1122557888888885422110 0000111 23556
Q ss_pred eeEEEEEeCCcceeeEecccCCCCCCCCccce
Q 014650 383 CLFIQIYHPRKKTWRYIFTKPPFPQPLDFGTA 414 (421)
Q Consensus 383 ~~~v~~yd~~~~~W~~i~~~p~~~~~~~~~~~ 414 (421)
.++|+++| .+.|+.+..+|+ ..++.++
T Consensus 319 ~~~Vy~~d--~g~Wk~~GeLp~---~l~YG~s 345 (381)
T COG3055 319 NSEVYIFD--NGSWKIVGELPQ---GLAYGVS 345 (381)
T ss_pred hceEEEEc--CCceeeecccCC---CccceEE
Confidence 67999998 999999988874 4455543
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.27 E-value=9.7e-12 Score=82.56 Aligned_cols=49 Identities=29% Similarity=0.544 Sum_probs=44.2
Q ss_pred CcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCc
Q 014650 111 LCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPR 167 (421)
Q Consensus 111 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r 167 (421)
|.+|++++++++|||+||..... ..++++++||+.|++|+++++||.||
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~--------~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSG--------KYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCC--------CccccEEEEcCCCCcEEECCCCCCCC
Confidence 88999999999999999986532 46899999999999999999999987
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.23 E-value=2.8e-11 Score=80.35 Aligned_cols=50 Identities=36% Similarity=0.585 Sum_probs=45.2
Q ss_pred CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC
Q 014650 166 PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR 223 (421)
Q Consensus 166 ~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 223 (421)
||..|++++++ ++|||+||... .....+++++||+++++|+++++||.||
T Consensus 1 pR~~~s~v~~~--~~iyv~GG~~~------~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVG--GKIYVFGGYDN------SGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEEC--CEEEEECCCCC------CCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68899999999 99999999862 2567899999999999999999999987
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.13 E-value=6.1e-11 Score=110.74 Aligned_cols=269 Identities=14% Similarity=0.118 Sum_probs=157.2
Q ss_pred CCCCcEEECCCCCCC-----CCCCCCcceEEEEeCC--EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc--
Q 014650 91 AANRACRPLPPLPCN-----PSTYSLCNFTSISLGP--YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA-- 161 (421)
Q Consensus 91 ~~~~~W~~l~~l~~~-----~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~-- 161 (421)
+.+.+|.++++-... -+...|.+|.++...+ .||+.||++.- +.+.++|+|+...+.|..+.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~---------~~l~DFW~Y~v~e~~W~~iN~~ 306 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT---------QDLADFWAYSVKENQWTCINRD 306 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc---------hhHHHHHhhcCCcceeEEeecC
Confidence 445678777543210 1124589999998854 99999999643 35789999999999998774
Q ss_pred -ccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC------CCCCCCCeeEEEEccC
Q 014650 162 -PMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE------MPRFRAGCVGFVAEES 234 (421)
Q Consensus 162 -~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~------~~~~r~~~~~~~~~~~ 234 (421)
..|..|++|-++...+..++|++|-+-..+.- ......+++|+||..++.|.-+.- -|...+.|.+++-.+.
T Consensus 307 t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r-~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k 385 (723)
T KOG2437|consen 307 TEGPGARSCHRMVIDISRRKLYLLGRYLDSSVR-NSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEK 385 (723)
T ss_pred CCCCcchhhhhhhhhhhHhHHhhhhhccccccc-cccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCc
Confidence 36788999999987722389999976322100 011335689999999999988642 2344455666655533
Q ss_pred CeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCcccc--------ccccc--------
Q 014650 235 GEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDE--------WERSR-------- 298 (421)
Q Consensus 235 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~--------~~~~~-------- 298 (421)
+-|||+||....... ..+..++.||.... .|.....-... ..|..
T Consensus 386 ~~iyVfGGr~~~~~e-------~~f~GLYaf~~~~~------------~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~ 446 (723)
T KOG2437|consen 386 HMIYVFGGRILTCNE-------PQFSGLYAFNCQCQ------------TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSK 446 (723)
T ss_pred ceEEEecCeeccCCC-------ccccceEEEecCCc------------cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCC
Confidence 459999997543321 23555777777665 88766321110 01111
Q ss_pred cCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEeccc---CC-CCCCCCceEEE---EeCCeEEEEEeecCCCccc
Q 014650 299 IGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTI---PE-IRPCKKPLGFI---VLDGELYVMTVLKGSDLNE 371 (421)
Q Consensus 299 ~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~-~~~~r~~~~~~---~~~~~lyv~GG~~~~~~~~ 371 (421)
...+|++||. +...-. .-...||+....=.++... .. ....+....-+ .-...|.+.-|.....
T Consensus 447 n~~ly~fggq--~s~~El----~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~--- 517 (723)
T KOG2437|consen 447 NRCLYVFGGQ--RSKTEL----NLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDK--- 517 (723)
T ss_pred CCeEEeccCc--ccceEE----eehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhc---
Confidence 1478999987 222111 2223343333322222100 00 00011111111 1235677777765332
Q ss_pred cccccccc--cceeeEEEEEeCCcceeeEecccC
Q 014650 372 TRRSQQHK--RAGCLFIQIYHPRKKTWRYIFTKP 403 (421)
Q Consensus 372 ~~~~~~~~--~~~~~~v~~yd~~~~~W~~i~~~p 403 (421)
.+ .+..+..++|++.+++|..|....
T Consensus 518 ------~~~e~~~rns~wi~~i~~~~w~cI~~I~ 545 (723)
T KOG2437|consen 518 ------EKREENVRNSFWIYDIVRNSWSCIYKID 545 (723)
T ss_pred ------cCccccccCcEEEEEecccchhhHhhhH
Confidence 11 223468899999999998886543
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.03 E-value=3.8e-10 Score=73.82 Aligned_cols=46 Identities=26% Similarity=0.512 Sum_probs=41.7
Q ss_pred CcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC
Q 014650 111 LCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI 164 (421)
Q Consensus 111 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (421)
|.+|++++.+++|||+||.+... ..++++++||+.+++|+.+++||
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~~~--------~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDGNN--------QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBESTS--------SBEEEEEEEETTTTEEEEEEEES
T ss_pred CccCEEEEECCEEEEEeeecccC--------ceeeeEEEEeCCCCEEEEcCCCC
Confidence 89999999999999999997633 47899999999999999999986
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.01 E-value=1.2e-09 Score=71.52 Aligned_cols=47 Identities=19% Similarity=0.436 Sum_probs=40.0
Q ss_pred CCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccC
Q 014650 345 CKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP 403 (421)
Q Consensus 345 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p 403 (421)
+|..+++++++++|||+||.++. ....+++++||+++++|+.++++|
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~------------~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGN------------NQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBEST------------SSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeeccc------------CceeeeEEEEeCCCCEEEEcCCCC
Confidence 36889999999999999999862 234589999999999999998775
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.97 E-value=1.1e-09 Score=72.17 Aligned_cols=49 Identities=24% Similarity=0.536 Sum_probs=42.4
Q ss_pred CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEE
Q 014650 120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAV 175 (421)
Q Consensus 120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 175 (421)
+++|||+||.+..+. ..++++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~-------~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGG-------TRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCC-------CEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 579999999873221 4689999999999999999999999999999874
No 35
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.84 E-value=7.3e-09 Score=97.13 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=108.7
Q ss_pred CCceEECCC----------CCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCC
Q 014650 210 KNEWVSMDE----------MPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDG 279 (421)
Q Consensus 210 t~~W~~~~~----------~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~ 279 (421)
+..|.++++ -|..|.+|.++.-.+.++||+.||+++.. -+.+.|.|....+
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~----------~l~DFW~Y~v~e~--------- 298 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ----------DLADFWAYSVKEN--------- 298 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch----------hHHHHHhhcCCcc---------
Confidence 446877643 24567778777766557999999999864 3456778877776
Q ss_pred CCCCceEecCcc-cccccccc--------CeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCC---CCCCCC
Q 014650 280 DRGTWREVGDMW-DEWERSRI--------GKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPE---IRPCKK 347 (421)
Q Consensus 280 ~~~~W~~~~~~~-~~~~~~~~--------g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~~~~r~ 347 (421)
.|+.+..-. .|+.|+++ .++|++|..++....-.....+++|+||..++.|..+.--.. .+-.-+
T Consensus 299 ---~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vf 375 (723)
T KOG2437|consen 299 ---QWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVF 375 (723)
T ss_pred ---eeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceee
Confidence 999985433 45567766 389999987533222111234789999999999999842111 000235
Q ss_pred ceEEEEeCCe--EEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEec
Q 014650 348 PLGFIVLDGE--LYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIF 400 (421)
Q Consensus 348 ~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~ 400 (421)
.|.+++.+++ |||+||+.-... ...-..++.||.....|+.+.
T Consensus 376 DHqM~Vd~~k~~iyVfGGr~~~~~----------e~~f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 376 DHQMCVDSEKHMIYVFGGRILTCN----------EPQFSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred cceeeEecCcceEEEecCeeccCC----------CccccceEEEecCCccHHHHH
Confidence 6889999988 999999853221 112247899999999998764
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.81 E-value=5.3e-09 Score=68.99 Aligned_cols=46 Identities=24% Similarity=0.517 Sum_probs=31.2
Q ss_pred CcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC
Q 014650 111 LCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI 164 (421)
Q Consensus 111 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (421)
|.+|+++.+ +++|||+||.+.++ ..++++|+||+.+++|++++++|
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~~--------~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSSG--------SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE-T--------EE---EEEEETTTTEEEE--SS-
T ss_pred cceEEEEEEeCCeEEEECCCCCCC--------cccCCEEEEECCCCEEEECCCCC
Confidence 889999988 58999999997654 36899999999999999998887
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.79 E-value=7.9e-09 Score=68.14 Aligned_cols=48 Identities=29% Similarity=0.612 Sum_probs=31.1
Q ss_pred CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCC
Q 014650 166 PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP 220 (421)
Q Consensus 166 ~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 220 (421)
||.+|+++.+++ ++|||+||.+. ....++++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~-~~i~v~GG~~~------~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGD-NSIYVFGGRDS------SGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-T-TEEEEE--EEE-------TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeC-CeEEEECCCCC------CCcccCCEEEEECCCCEEEECCCCC
Confidence 689999999954 89999999873 2367999999999999999998887
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.79 E-value=1.2e-08 Score=67.13 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=38.6
Q ss_pred CCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecccC
Q 014650 345 CKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFTKP 403 (421)
Q Consensus 345 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p 403 (421)
+|.++++++++++|||+||+... ......+++++||+++++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~----------~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTD----------NGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccC----------CCCcccceeEEEECCCCEEeecCCCC
Confidence 36889999999999999999111 11234479999999999999987654
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.78 E-value=2.2e-08 Score=65.94 Aligned_cols=49 Identities=27% Similarity=0.467 Sum_probs=41.8
Q ss_pred CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCC
Q 014650 166 PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMP 220 (421)
Q Consensus 166 ~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 220 (421)
||..|++++++ ++|||+||... +......+++++||+++++|+.+++|+
T Consensus 1 ~r~~hs~~~~~--~kiyv~GG~~~----~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLD--GKIYVFGGYGT----DNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEEC--CEEEEECCccc----CCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999999 99999999811 134577899999999999999998875
No 40
>smart00612 Kelch Kelch domain.
Probab=98.72 E-value=1.7e-08 Score=65.81 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=40.1
Q ss_pred EEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEc
Q 014650 122 YIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVR 176 (421)
Q Consensus 122 ~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 176 (421)
+|||+||.... ...+++++||+.+++|+.+++|+.+|..|++++++
T Consensus 1 ~iyv~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGG---------QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCC---------ceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence 48999997531 25789999999999999999999999999998876
No 41
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.72 E-value=4.3e-08 Score=64.49 Aligned_cols=47 Identities=30% Similarity=0.604 Sum_probs=41.1
Q ss_pred CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEE
Q 014650 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFV 230 (421)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 230 (421)
++|||+||.+. .....++++++||+.+++|++++++|.+|..|++++
T Consensus 2 ~~~~vfGG~~~-----~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 2 NKLYVFGGYDD-----DGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CEEEEECCcCC-----CCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 89999999862 245778999999999999999999999999987765
No 42
>smart00612 Kelch Kelch domain.
Probab=98.59 E-value=9.3e-08 Score=62.26 Aligned_cols=46 Identities=39% Similarity=0.618 Sum_probs=38.5
Q ss_pred EEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEc
Q 014650 180 QIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAE 232 (421)
Q Consensus 180 ~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 232 (421)
+||++||.. .....+++++||+.+++|+.+++|+.+|..++++++.
T Consensus 1 ~iyv~GG~~-------~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFD-------GGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCC-------CCceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence 489999975 2355789999999999999999999999887766553
No 43
>PLN02772 guanylate kinase
Probab=98.47 E-value=1.1e-06 Score=82.80 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=66.7
Q ss_pred CCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec---cccCCCccceEEEEEccCCEEEEEcC
Q 014650 110 SLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI---APMISPRGSFACAAVRSLNQIIVAGG 186 (421)
Q Consensus 110 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~~iyv~GG 186 (421)
++..++++.+++++||+||.+..+ ...+.+++||+.|++|... ...|.+|.+|+++++++ ++|+|+++
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~--------~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~-~rilv~~~ 94 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGN--------TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNK-DRILVIKK 94 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCc--------cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECC-ceEEEEeC
Confidence 378899999999999999975432 2568999999999999875 45688999999999976 89999988
Q ss_pred CccccccCCCCCccceEEEEECCC
Q 014650 187 GSRHSLFGAAGSRISSVERYDVAK 210 (421)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~yd~~t 210 (421)
.. ..-.++|.+...|
T Consensus 95 ~~---------~~~~~~w~l~~~t 109 (398)
T PLN02772 95 GS---------APDDSIWFLEVDT 109 (398)
T ss_pred CC---------CCccceEEEEcCC
Confidence 54 2235677766665
No 44
>PLN02772 guanylate kinase
Probab=98.36 E-value=2.1e-06 Score=80.86 Aligned_cols=73 Identities=19% Similarity=0.307 Sum_probs=61.3
Q ss_pred CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEEC---CCCCCCCCCeeEEEEccCCeEEEE
Q 014650 164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSM---DEMPRFRAGCVGFVAEESGEFWVM 240 (421)
Q Consensus 164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~~~iyv~ 240 (421)
..++.++++++++ +++||+||.+ +.....+.+++||..+++|... +..|.||.+|+++++.+ ++|+|+
T Consensus 22 ~~~~~~~tav~ig--dk~yv~GG~~------d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~-~rilv~ 92 (398)
T PLN02772 22 VKPKNRETSVTIG--DKTYVIGGNH------EGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNK-DRILVI 92 (398)
T ss_pred CCCCCcceeEEEC--CEEEEEcccC------CCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECC-ceEEEE
Confidence 3478899999999 9999999976 2333678999999999999874 57799999999888877 999999
Q ss_pred eccCC
Q 014650 241 GGYGD 245 (421)
Q Consensus 241 GG~~~ 245 (421)
++...
T Consensus 93 ~~~~~ 97 (398)
T PLN02772 93 KKGSA 97 (398)
T ss_pred eCCCC
Confidence 87544
No 45
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.34 E-value=8.3e-05 Score=66.62 Aligned_cols=195 Identities=14% Similarity=0.144 Sum_probs=102.7
Q ss_pred eEEEEeCccCceeeccccCCCcc---c--eEEEEE--ccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650 146 SAFRFNFLTFSWERIAPMISPRG---S--FACAAV--RSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE 218 (421)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~r~---~--~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 218 (421)
.+.++||.|.+|+.+|+.+.++. . .+.... .+.-+|..+.... .......+++|+..+++|+.+..
T Consensus 15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-------~~~~~~~~~Vys~~~~~Wr~~~~ 87 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-------GNRNQSEHQVYTLGSNSWRTIEC 87 (230)
T ss_pred cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-------CCCCCccEEEEEeCCCCcccccc
Confidence 58999999999999987554311 1 111111 1002555554321 11134578999999999999874
Q ss_pred CCCCC-CCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceE-ecCccccccc
Q 014650 219 MPRFR-AGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWRE-VGDMWDEWER 296 (421)
Q Consensus 219 ~~~~r-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~ 296 (421)
.+... ....++.+. |.||-+....... .. ..+..||..+. +|.. ++. |.....
T Consensus 88 ~~~~~~~~~~~v~~~--G~lyw~~~~~~~~---------~~-~~IvsFDl~~E------------~f~~~i~~-P~~~~~ 142 (230)
T TIGR01640 88 SPPHHPLKSRGVCIN--GVLYYLAYTLKTN---------PD-YFIVSFDVSSE------------RFKEFIPL-PCGNSD 142 (230)
T ss_pred CCCCccccCCeEEEC--CEEEEEEEECCCC---------Cc-EEEEEEEcccc------------eEeeeeec-Cccccc
Confidence 33211 112244444 8898887432211 00 12667777765 9995 432 221110
Q ss_pred -cccCeEEEEccccCCCceEEEe------cCCceEEEe-CCCCceeEecccCCCCCCCC----ceEEEEeCCeEEEEEee
Q 014650 297 -SRIGKIVVMEDENRGRPEVFML------DKFDILRYD-MGLNRWLKETTIPEIRPCKK----PLGFIVLDGELYVMTVL 364 (421)
Q Consensus 297 -~~~g~i~v~GG~~~g~~~~~~~------~~~~v~~yd-~~~~~W~~~~~~~~~~~~r~----~~~~~~~~~~lyv~GG~ 364 (421)
.....+..++|.+ ..+ ...+||+.+ ....+|+++-.++.+...+. ....+..+++|++....
T Consensus 143 ~~~~~~L~~~~G~L------~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~ 216 (230)
T TIGR01640 143 SVDYLSLINYKGKL------AVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED 216 (230)
T ss_pred cccceEEEEECCEE------EEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC
Confidence 1112344444442 111 113677764 44567998755542111111 12345667888887753
Q ss_pred cCCCccccccccccccceeeEEEEEeCCcc
Q 014650 365 KGSDLNETRRSQQHKRAGCLFIQIYHPRKK 394 (421)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 394 (421)
. .. .-+..||+++|
T Consensus 217 ~-~~---------------~~~~~y~~~~~ 230 (230)
T TIGR01640 217 E-NP---------------FYIFYYNVGEN 230 (230)
T ss_pred C-Cc---------------eEEEEEeccCC
Confidence 1 11 14889998875
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.23 E-value=1.7e-05 Score=70.50 Aligned_cols=86 Identities=16% Similarity=0.236 Sum_probs=63.3
Q ss_pred cEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCcc----Cceeecc
Q 014650 86 PFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLT----FSWERIA 161 (421)
Q Consensus 86 ~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t----~~W~~~~ 161 (421)
...||+.+++++.+.. +...+ .+++ +..-++.++++||... + .+.+..|+|.+ ..|...+
T Consensus 48 s~~yD~~tn~~rpl~v-~td~F---CSgg-~~L~dG~ll~tGG~~~-G----------~~~ir~~~p~~~~~~~~w~e~~ 111 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV-QTDTF---CSGG-AFLPDGRLLQTGGDND-G----------NKAIRIFTPCTSDGTCDWTESP 111 (243)
T ss_pred EEEEecCCCcEEeccC-CCCCc---ccCc-CCCCCCCEEEeCCCCc-c----------ccceEEEecCCCCCCCCceECc
Confidence 4589999999998853 33311 1222 2334789999999743 2 35677888876 6798775
Q ss_pred -ccCCCccceEEEEEccCCEEEEEcCCc
Q 014650 162 -PMISPRGSFACAAVRSLNQIIVAGGGS 188 (421)
Q Consensus 162 -~~~~~r~~~~~~~~~~~~~iyv~GG~~ 188 (421)
.|..+|-+.++..+.+ |+++|+||..
T Consensus 112 ~~m~~~RWYpT~~~L~D-G~vlIvGG~~ 138 (243)
T PF07250_consen 112 NDMQSGRWYPTATTLPD-GRVLIVGGSN 138 (243)
T ss_pred ccccCCCccccceECCC-CCEEEEeCcC
Confidence 5899999999999987 9999999974
No 47
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.21 E-value=1.2e-06 Score=56.93 Aligned_cols=41 Identities=24% Similarity=0.491 Sum_probs=35.5
Q ss_pred CCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCccc
Q 014650 21 IPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLV 61 (421)
Q Consensus 21 ~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~ 61 (421)
|..||+|++.+||+.++..++.++..|||+|+.+..++.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW 41 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW 41 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence 56899999999999999999999999999999999877543
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.17 E-value=0.00011 Score=65.37 Aligned_cols=88 Identities=11% Similarity=0.207 Sum_probs=64.4
Q ss_pred eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCC----CceEECC-CCC
Q 014650 146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAK----NEWVSMD-EMP 220 (421)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~ 220 (421)
.-..||+.|++++.+.- ..--.+.+.+.+.+ |++.+.||... -.+.+..|++.+ ..|.+.+ .|.
T Consensus 47 ~s~~yD~~tn~~rpl~v-~td~FCSgg~~L~d-G~ll~tGG~~~---------G~~~ir~~~p~~~~~~~~w~e~~~~m~ 115 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTV-QTDTFCSGGAFLPD-GRLLQTGGDND---------GNKAIRIFTPCTSDGTCDWTESPNDMQ 115 (243)
T ss_pred EEEEEecCCCcEEeccC-CCCCcccCcCCCCC-CCEEEeCCCCc---------cccceEEEecCCCCCCCCceECccccc
Confidence 45679999999998763 33334444445544 99999999741 244577788876 5798875 589
Q ss_pred CCCCCeeEEEEccCCeEEEEeccCC
Q 014650 221 RFRAGCVGFVAEESGEFWVMGGYGD 245 (421)
Q Consensus 221 ~~r~~~~~~~~~~~~~iyv~GG~~~ 245 (421)
.+|-..+.....+ |+++|+||...
T Consensus 116 ~~RWYpT~~~L~D-G~vlIvGG~~~ 139 (243)
T PF07250_consen 116 SGRWYPTATTLPD-GRVLIVGGSNN 139 (243)
T ss_pred CCCccccceECCC-CCEEEEeCcCC
Confidence 9998877777776 99999999874
No 49
>PF13854 Kelch_5: Kelch motif
Probab=98.15 E-value=6.7e-06 Score=51.89 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=35.3
Q ss_pred cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN 211 (421)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~ 211 (421)
+|.+|..|++++++ ++||++||.+. ......+++++||..+.
T Consensus 1 ~P~~R~~hs~~~~~--~~iyi~GG~~~-----~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVG--NNIYIFGGYSG-----NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEEC--CEEEEEcCccC-----CCCCEECcEEEEECCCC
Confidence 47899999999999 99999999863 13567899999998763
No 50
>PF13854 Kelch_5: Kelch motif
Probab=98.12 E-value=7.5e-06 Score=51.67 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=32.4
Q ss_pred CCCcceEEEEeCCEEEEEccccc-CCCCCCCCCCCCCCeEEEEeCccC
Q 014650 109 YSLCNFTSISLGPYIYLLGGSHF-DARSFPLDRPLPSDSAFRFNFLTF 155 (421)
Q Consensus 109 ~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~~~~~v~~yd~~t~ 155 (421)
.+|.+|++++.+++|||+||.+. +. ...+++|+||..++
T Consensus 3 ~~R~~hs~~~~~~~iyi~GG~~~~~~--------~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 3 SPRYGHSAVVVGNNIYIFGGYSGNNN--------SYSNDLYVLDLPSF 42 (42)
T ss_pred CCccceEEEEECCEEEEEcCccCCCC--------CEECcEEEEECCCC
Confidence 34999999999999999999974 22 46899999998763
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.03 E-value=0.0018 Score=57.98 Aligned_cols=149 Identities=9% Similarity=0.068 Sum_probs=84.4
Q ss_pred CceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEE---eC-CEEEEEcccccCCCCCCCCCCCCCCe
Q 014650 71 SDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSIS---LG-PYIYLLGGSHFDARSFPLDRPLPSDS 146 (421)
Q Consensus 71 ~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~---~~-~~iyv~GG~~~~~~~~~~~~~~~~~~ 146 (421)
+.++++... ..+..+||.|++|..+|+.+.+.....+..++.+. .+ -+|..+.....+ .....
T Consensus 5 nGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~---------~~~~~ 71 (230)
T TIGR01640 5 DGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN---------RNQSE 71 (230)
T ss_pred ceEEEEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC---------CCCcc
Confidence 455555432 45889999999999997654321101111111111 11 245555432111 12357
Q ss_pred EEEEeCccCceeeccccCCC-ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE-CCCCCCCCC
Q 014650 147 AFRFNFLTFSWERIAPMISP-RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS-MDEMPRFRA 224 (421)
Q Consensus 147 v~~yd~~t~~W~~~~~~~~~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~ 224 (421)
+++|+..+++|+.+...+.. ......+.++ |.+|.+.... .......+..||..+++|.. ++ +|....
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~--G~lyw~~~~~-------~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~ 141 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPHHPLKSRGVCIN--GVLYYLAYTL-------KTNPDYFIVSFDVSSERFKEFIP-LPCGNS 141 (230)
T ss_pred EEEEEeCCCCccccccCCCCccccCCeEEEC--CEEEEEEEEC-------CCCCcEEEEEEEcccceEeeeee-cCcccc
Confidence 89999999999998743322 1112256677 9999987532 11112368899999999995 43 343321
Q ss_pred ---CeeEEEEccCCeEEEEecc
Q 014650 225 ---GCVGFVAEESGEFWVMGGY 243 (421)
Q Consensus 225 ---~~~~~~~~~~~~iyv~GG~ 243 (421)
.....+..+ |+|.++...
T Consensus 142 ~~~~~~~L~~~~-G~L~~v~~~ 162 (230)
T TIGR01640 142 DSVDYLSLINYK-GKLAVLKQK 162 (230)
T ss_pred ccccceEEEEEC-CEEEEEEec
Confidence 123344444 888887654
No 52
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.01 E-value=0.0035 Score=59.21 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=33.3
Q ss_pred cCCCChHHHHHHHhcCC-CcchhHHHHhhhHhHHhhhcC
Q 014650 20 LIPGLPNDVASLILAFV-PYSHQSRLKQTCRSWFLFFSS 57 (421)
Q Consensus 20 ~~~~Lp~dl~~~~l~~l-p~~~~~~~~~v~k~W~~l~~~ 57 (421)
-|+.||+||+..|..+| ...++.++++||+.||+-...
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 37899999999999999 467899999999999986653
No 53
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.81 E-value=2.2e-05 Score=49.25 Aligned_cols=39 Identities=28% Similarity=0.546 Sum_probs=35.8
Q ss_pred ChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccc
Q 014650 24 LPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVF 62 (421)
Q Consensus 24 Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~ 62 (421)
||+|++.+|+.+++..++.++..|||+|+.+...+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999998877543
No 54
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.62 E-value=1.3e-05 Score=52.26 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=34.3
Q ss_pred CCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCccc
Q 014650 21 IPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLV 61 (421)
Q Consensus 21 ~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~ 61 (421)
|..||+|++.+|+.+++..++..++.|||+|+++..+..+.
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~ 43 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLW 43 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCcc
Confidence 45799999999999999999999999999999999887653
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.39 E-value=0.079 Score=47.26 Aligned_cols=116 Identities=12% Similarity=0.150 Sum_probs=63.9
Q ss_pred ccEEEeCCCC--cEEECCCCCCCCCCCCCcceE--EEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--ee
Q 014650 85 SPFLFDAANR--ACRPLPPLPCNPSTYSLCNFT--SISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WE 158 (421)
Q Consensus 85 ~~~~~d~~~~--~W~~l~~l~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~ 158 (421)
.+.++|+.+. .|+. .+..+ ..... .+..++.||+..+ ...++++|..+.+ |+
T Consensus 4 ~l~~~d~~tG~~~W~~--~~~~~-----~~~~~~~~~~~~~~v~~~~~---------------~~~l~~~d~~tG~~~W~ 61 (238)
T PF13360_consen 4 TLSALDPRTGKELWSY--DLGPG-----IGGPVATAVPDGGRVYVASG---------------DGNLYALDAKTGKVLWR 61 (238)
T ss_dssp EEEEEETTTTEEEEEE--ECSSS-----CSSEEETEEEETTEEEEEET---------------TSEEEEEETTTSEEEEE
T ss_pred EEEEEECCCCCEEEEE--ECCCC-----CCCccceEEEeCCEEEEEcC---------------CCEEEEEECCCCCEEEE
Confidence 3667887654 3665 22211 12222 4447889998843 3579999987765 66
Q ss_pred eccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eE-ECCCCCCCC-CCeeEEEEccC
Q 014650 159 RIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WV-SMDEMPRFR-AGCVGFVAEES 234 (421)
Q Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~-~~~~~~~~r-~~~~~~~~~~~ 234 (421)
.-. +.+-... ....+ +.+|+..+. +.+..+|.++.+ |+ .....+... .......+.+
T Consensus 62 ~~~--~~~~~~~-~~~~~--~~v~v~~~~-------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~- 122 (238)
T PF13360_consen 62 FDL--PGPISGA-PVVDG--GRVYVGTSD-------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG- 122 (238)
T ss_dssp EEC--SSCGGSG-EEEET--TEEEEEETT-------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-
T ss_pred eec--cccccce-eeecc--cccccccce-------------eeeEecccCCcceeeeeccccccccccccccCceEec-
Confidence 443 2221122 35666 889888642 158899988875 98 443322221 1222333333
Q ss_pred CeEEEEe
Q 014650 235 GEFWVMG 241 (421)
Q Consensus 235 ~~iyv~G 241 (421)
+.+|+..
T Consensus 123 ~~~~~~~ 129 (238)
T PF13360_consen 123 DRLYVGT 129 (238)
T ss_dssp TEEEEEE
T ss_pred CEEEEEe
Confidence 6666654
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.34 E-value=0.063 Score=52.26 Aligned_cols=221 Identities=13% Similarity=0.127 Sum_probs=113.1
Q ss_pred CCceEEEeCCCCCCCccEEEeCCC--CcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650 70 QSDLLCIFPQDPSISSPFLFDAAN--RACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSA 147 (421)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~d~~~--~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v 147 (421)
.+..+|+.+.+ ..++++|..+ ..|+.- ++.+ ...+.++.++.||+..+ ...+
T Consensus 119 ~~~~v~v~~~~---g~l~ald~~tG~~~W~~~--~~~~------~~ssP~v~~~~v~v~~~---------------~g~l 172 (394)
T PRK11138 119 AGGKVYIGSEK---GQVYALNAEDGEVAWQTK--VAGE------ALSRPVVSDGLVLVHTS---------------NGML 172 (394)
T ss_pred ECCEEEEEcCC---CEEEEEECCCCCCccccc--CCCc------eecCCEEECCEEEEECC---------------CCEE
Confidence 34556665432 3488999876 458653 2221 11233456888887543 2468
Q ss_pred EEEeCccCc--eeeccccCC--CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCCC
Q 014650 148 FRFNFLTFS--WERIAPMIS--PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMPR 221 (421)
Q Consensus 148 ~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~ 221 (421)
+.+|+.+.+ |+.-...+. .+...+-++.+ +.+|+..+. ..+..+|.++++ |+.-...+.
T Consensus 173 ~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~--~~v~~~~~~-------------g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 173 QALNESDGAVKWTVNLDVPSLTLRGESAPATAF--GGAIVGGDN-------------GRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred EEEEccCCCEeeeecCCCCcccccCCCCCEEEC--CEEEEEcCC-------------CEEEEEEccCChhhheeccccCC
Confidence 999988766 876433221 12222334455 777765442 236778888764 874211111
Q ss_pred C-----CC--CeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccc
Q 014650 222 F-----RA--GCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEW 294 (421)
Q Consensus 222 ~-----r~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 294 (421)
. +. ....-++.+ +.+|+.+. ++ .++++|+.++ ...|+.--.-.. .
T Consensus 238 ~~~~~~~~~~~~~sP~v~~-~~vy~~~~-~g---------------~l~ald~~tG----------~~~W~~~~~~~~-~ 289 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVG-GVVYALAY-NG---------------NLVALDLRSG----------QIVWKREYGSVN-D 289 (394)
T ss_pred CccchhcccccCCCcEEEC-CEEEEEEc-CC---------------eEEEEECCCC----------CEEEeecCCCcc-C
Confidence 1 00 012222334 78887653 21 1446666654 125875321110 0
Q ss_pred cccccCeEEEEccccCCCceEEEecCCceEEEeCCCC--ceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCcccc
Q 014650 295 ERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLN--RWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNET 372 (421)
Q Consensus 295 ~~~~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 372 (421)
.....+++|+.... ..+..+|..+. .|+.-. +. .+...+.+..++.||+... +
T Consensus 290 ~~~~~~~vy~~~~~------------g~l~ald~~tG~~~W~~~~-~~----~~~~~sp~v~~g~l~v~~~-~------- 344 (394)
T PRK11138 290 FAVDGGRIYLVDQN------------DRVYALDTRGGVELWSQSD-LL----HRLLTAPVLYNGYLVVGDS-E------- 344 (394)
T ss_pred cEEECCEEEEEcCC------------CeEEEEECCCCcEEEcccc-cC----CCcccCCEEECCEEEEEeC-C-------
Confidence 11122455554422 45667777654 475421 11 1223344567899987543 2
Q ss_pred ccccccccceeeEEEEEeCCcce
Q 014650 373 RRSQQHKRAGCLFIQIYHPRKKT 395 (421)
Q Consensus 373 ~~~~~~~~~~~~~v~~yd~~~~~ 395 (421)
-.++++|+.+++
T Consensus 345 -----------G~l~~ld~~tG~ 356 (394)
T PRK11138 345 -----------GYLHWINREDGR 356 (394)
T ss_pred -----------CEEEEEECCCCC
Confidence 157778887765
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.28 E-value=0.12 Score=50.20 Aligned_cols=114 Identities=8% Similarity=0.019 Sum_probs=64.1
Q ss_pred cCCceEEEeCCCCCCCccEEEeCCC--CcEEECCCCCCCCCC---CCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCC
Q 014650 69 SQSDLLCIFPQDPSISSPFLFDAAN--RACRPLPPLPCNPST---YSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLP 143 (421)
Q Consensus 69 ~~~~~~~~~g~~~~~~~~~~~d~~~--~~W~~l~~l~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 143 (421)
..++.+|+.... ..+++||..+ ..|+.-..-...... ..+...+.++.++.||+.+.
T Consensus 67 v~~~~vy~~~~~---g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--------------- 128 (394)
T PRK11138 67 VAYNKVYAADRA---GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--------------- 128 (394)
T ss_pred EECCEEEEECCC---CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC---------------
Confidence 356677776653 2478999865 458653111100000 00222345667889997543
Q ss_pred CCeEEEEeCccCc--eeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCC
Q 014650 144 SDSAFRFNFLTFS--WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDE 218 (421)
Q Consensus 144 ~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~ 218 (421)
...++.+|..|.+ |+.-.+ .+ ...+-++.+ +.+|+..+. ..+..+|+++++ |+.-..
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~--~~-~~ssP~v~~--~~v~v~~~~-------------g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVA--GE-ALSRPVVSD--GLVLVHTSN-------------GMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CCEEEEEECCCCCCcccccCC--Cc-eecCCEEEC--CEEEEECCC-------------CEEEEEEccCCCEeeeecCC
Confidence 2468999987754 875322 11 112223446 888875442 258899999876 886433
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.96 E-value=0.04 Score=50.45 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=37.4
Q ss_pred CCCCh----HHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccc
Q 014650 21 IPGLP----NDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVF 62 (421)
Q Consensus 21 ~~~Lp----~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~ 62 (421)
+..|| +++.++||+.|...++.....|||+|+.++..+.+.+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 45688 9999999999999999999999999999999886543
No 59
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.95 E-value=0.02 Score=54.38 Aligned_cols=102 Identities=14% Similarity=0.157 Sum_probs=65.7
Q ss_pred eCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCC
Q 014650 119 LGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGS 198 (421)
Q Consensus 119 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 198 (421)
.+++|+.++.. ..+.+||+.|..-..+|.|..+.....++.++ ++||++........ ....
T Consensus 75 ~gskIv~~d~~---------------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG--~~LY~m~~~~~~~~--~~~~ 135 (342)
T PF07893_consen 75 HGSKIVAVDQS---------------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVG--DKLYAMDRSPFPEP--AGRP 135 (342)
T ss_pred cCCeEEEEcCC---------------CCeEEEECCCCeEeccCCCCCCCcceEEEEeC--CeEEEeeccCcccc--ccCc
Confidence 48899998663 23889999999999899988887777888889 88999987642200 0000
Q ss_pred ccceEEEE--EC--------CCCceEECCCCCCCCCC------eeEEEEccCCeEEE
Q 014650 199 RISSVERY--DV--------AKNEWVSMDEMPRFRAG------CVGFVAEESGEFWV 239 (421)
Q Consensus 199 ~~~~~~~y--d~--------~t~~W~~~~~~~~~r~~------~~~~~~~~~~~iyv 239 (421)
.....|.+ ++ ..-.|+.+|+.|..+.. ..+-++.++..|+|
T Consensus 136 ~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~v 192 (342)
T PF07893_consen 136 DFPCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFV 192 (342)
T ss_pred cceeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEE
Confidence 00145544 42 22358889887765543 22333333377887
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00093 Score=60.05 Aligned_cols=51 Identities=14% Similarity=0.251 Sum_probs=43.2
Q ss_pred cccccCccccCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCccc
Q 014650 11 LVATDETVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLV 61 (421)
Q Consensus 11 ~~~~~~~~~~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~ 61 (421)
...+..+..-|-+||||+++.||++|+.+.+.++..|||||..+..+..+.
T Consensus 88 ~~~~~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 88 LNRENNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred hhcccCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 334445556688999999999999999999999999999999998877653
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.80 E-value=0.54 Score=45.34 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=54.1
Q ss_pred CceEEEeCCCCCCCccEEEeCCCC--cEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEE
Q 014650 71 SDLLCIFPQDPSISSPFLFDAANR--ACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAF 148 (421)
Q Consensus 71 ~~~~~~~g~~~~~~~~~~~d~~~~--~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~ 148 (421)
+..+|+.+.+ ..++++|+.+. .|+.- ++.. ...+.+..++.+|+..+ ...++
T Consensus 105 ~~~v~v~~~~---g~l~ald~~tG~~~W~~~--~~~~------~~~~p~v~~~~v~v~~~---------------~g~l~ 158 (377)
T TIGR03300 105 GGLVFVGTEK---GEVIALDAEDGKELWRAK--LSSE------VLSPPLVANGLVVVRTN---------------DGRLT 158 (377)
T ss_pred CCEEEEEcCC---CEEEEEECCCCcEeeeec--cCce------eecCCEEECCEEEEECC---------------CCeEE
Confidence 4455554432 34788887654 46543 2211 11223345677776543 23588
Q ss_pred EEeCccCc--eeeccccCC--CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEE
Q 014650 149 RFNFLTFS--WERIAPMIS--PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVS 215 (421)
Q Consensus 149 ~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~ 215 (421)
.+|+.+.+ |+.-...+. .+...+.++.+ +.+|+ |..+ ..+..+|+++++ |+.
T Consensus 159 a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~--~~v~~-~~~~------------g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 159 ALDAATGERLWTYSRVTPALTLRGSASPVIAD--GGVLV-GFAG------------GKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EEEcCCCceeeEEccCCCceeecCCCCCEEEC--CEEEE-ECCC------------CEEEEEEccCCCEeeee
Confidence 89987654 775332221 12223334455 65554 3321 247788988764 864
No 62
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=96.77 E-value=0.068 Score=47.80 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=53.0
Q ss_pred ccccCCCccceEEEEEccC--CEEEEEcCCcccc-------ccCCCCCccceEEEEECCCCceE--ECCCCCCCCCCeeE
Q 014650 160 IAPMISPRGSFACAAVRSL--NQIIVAGGGSRHS-------LFGAAGSRISSVERYDVAKNEWV--SMDEMPRFRAGCVG 228 (421)
Q Consensus 160 ~~~~~~~r~~~~~~~~~~~--~~iyv~GG~~~~~-------~~~~~~~~~~~~~~yd~~t~~W~--~~~~~~~~r~~~~~ 228 (421)
+.++|.+|++|++.++.+. .-..++||...-. .|..--.....|+..|++-+-.+ .++.+......|.+
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvs 160 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVS 160 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEE
Confidence 4688999999999888542 2467788865321 01111122334666777766554 35666666665655
Q ss_pred EEEccCCeEEEEeccCCC
Q 014650 229 FVAEESGEFWVMGGYGDS 246 (421)
Q Consensus 229 ~~~~~~~~iyv~GG~~~~ 246 (421)
++-. +.+|++||..-.
T Consensus 161 lar~--D~VYilGGHsl~ 176 (337)
T PF03089_consen 161 LARN--DCVYILGGHSLE 176 (337)
T ss_pred EecC--ceEEEEccEEcc
Confidence 5443 899999997543
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.45 E-value=0.095 Score=49.82 Aligned_cols=123 Identities=20% Similarity=0.300 Sum_probs=74.4
Q ss_pred CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650 70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR 149 (421)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~ 149 (421)
.+..|+...+. .....||+.+..-..+|.|+.+ ...-.++.++++||++......... .. .....++.
T Consensus 75 ~gskIv~~d~~---~~t~vyDt~t~av~~~P~l~~p-----k~~pisv~VG~~LY~m~~~~~~~~~---~~-~~~~~FE~ 142 (342)
T PF07893_consen 75 HGSKIVAVDQS---GRTLVYDTDTRAVATGPRLHSP-----KRCPISVSVGDKLYAMDRSPFPEPA---GR-PDFPCFEA 142 (342)
T ss_pred cCCeEEEEcCC---CCeEEEECCCCeEeccCCCCCC-----CcceEEEEeCCeEEEeeccCccccc---cC-ccceeEEE
Confidence 34555555443 3378999999988888887765 2333455668889999986432210 00 00003333
Q ss_pred --Ee--------CccCceeeccccCCCccc-------eEEEEE-ccCCEEEE-EcCCccccccCCCCCccceEEEEECCC
Q 014650 150 --FN--------FLTFSWERIAPMISPRGS-------FACAAV-RSLNQIIV-AGGGSRHSLFGAAGSRISSVERYDVAK 210 (421)
Q Consensus 150 --yd--------~~t~~W~~~~~~~~~r~~-------~~~~~~-~~~~~iyv-~GG~~~~~~~~~~~~~~~~~~~yd~~t 210 (421)
|+ ...-.|+.+|+.|..+.. .+.+++ + ..|+| +-|.. ..++.||.++
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g--~~I~vS~~~~~------------~GTysfDt~~ 208 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDG--RTIFVSVNGRR------------WGTYSFDTES 208 (342)
T ss_pred eccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecC--CeEEEEecCCc------------eEEEEEEcCC
Confidence 44 233468898876654322 234445 4 67877 33321 3489999999
Q ss_pred CceEECCC
Q 014650 211 NEWVSMDE 218 (421)
Q Consensus 211 ~~W~~~~~ 218 (421)
.+|+..++
T Consensus 209 ~~W~~~Gd 216 (342)
T PF07893_consen 209 HEWRKHGD 216 (342)
T ss_pred cceeeccc
Confidence 99999876
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.29 E-value=1.2 Score=43.04 Aligned_cols=117 Identities=13% Similarity=0.099 Sum_probs=60.1
Q ss_pred ccEEEeCCCC--cEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccC--ceeec
Q 014650 85 SPFLFDAANR--ACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTF--SWERI 160 (421)
Q Consensus 85 ~~~~~d~~~~--~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~--~W~~~ 160 (421)
.++++|+.+. .|+.-...+.. ..+...+.+..++.+| +|.. ...+..+|+.+. .|+.-
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~---~~~~~~sp~~~~~~v~-~~~~--------------~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPAL---TLRGSASPVIADGGVL-VGFA--------------GGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCce---eecCCCCCEEECCEEE-EECC--------------CCEEEEEEccCCCEeeeec
Confidence 4789998764 47653222110 0122233445566655 4332 235888888765 47643
Q ss_pred cccCCCc--------cceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCCCCCCCeeEEE
Q 014650 161 APMISPR--------GSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMPRFRAGCVGFV 230 (421)
Q Consensus 161 ~~~~~~r--------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~ 230 (421)
...+... .....++.+ +.+|+.+.. ..+.+||+++.+ |+.-. . .....+
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~--~~vy~~~~~-------------g~l~a~d~~tG~~~W~~~~--~----~~~~p~ 276 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDG--GQVYAVSYQ-------------GRVAALDLRSGRVLWKRDA--S----SYQGPA 276 (377)
T ss_pred cccCCCCCchhhhhccCCccEEEC--CEEEEEEcC-------------CEEEEEECCCCcEEEeecc--C----CccCce
Confidence 2222111 112233445 788876532 248889998765 86531 1 112233
Q ss_pred EccCCeEEEEe
Q 014650 231 AEESGEFWVMG 241 (421)
Q Consensus 231 ~~~~~~iyv~G 241 (421)
+.+ ++||+..
T Consensus 277 ~~~-~~vyv~~ 286 (377)
T TIGR03300 277 VDD-NRLYVTD 286 (377)
T ss_pred EeC-CEEEEEC
Confidence 444 7888864
No 65
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.05 E-value=0.99 Score=40.07 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=75.0
Q ss_pred CCceEEEeCCCCCCCccEEEeCCCCc--EEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650 70 QSDLLCIFPQDPSISSPFLFDAANRA--CRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSA 147 (421)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~d~~~~~--W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v 147 (421)
.++.+|+... ...++++|+.+.+ |+.- ++.+ .....+..++.||+..+. +.+
T Consensus 35 ~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~--~~~~------~~~~~~~~~~~v~v~~~~---------------~~l 88 (238)
T PF13360_consen 35 DGGRVYVASG---DGNLYALDAKTGKVLWRFD--LPGP------ISGAPVVDGGRVYVGTSD---------------GSL 88 (238)
T ss_dssp ETTEEEEEET---TSEEEEEETTTSEEEEEEE--CSSC------GGSGEEEETTEEEEEETT---------------SEE
T ss_pred eCCEEEEEcC---CCEEEEEECCCCCEEEEee--cccc------ccceeeecccccccccce---------------eee
Confidence 5666777633 3458999987655 5543 3322 222246778999888742 368
Q ss_pred EEEeCccCc--ee-eccccCC--CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCC
Q 014650 148 FRFNFLTFS--WE-RIAPMIS--PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMP 220 (421)
Q Consensus 148 ~~yd~~t~~--W~-~~~~~~~--~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~ 220 (421)
+.+|..+.+ |+ .....+. .+......+.+ +.+|+... ...+..+|+++++ |+.-...+
T Consensus 89 ~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 89 YALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG--DRLYVGTS-------------SGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET--TEEEEEET-------------CSEEEEEETTTTEEEEEEESSTT
T ss_pred EecccCCcceeeeeccccccccccccccCceEec--CEEEEEec-------------cCcEEEEecCCCcEEEEeecCCC
Confidence 999976655 88 3433222 23334445556 77777653 2348899999876 87643433
Q ss_pred CCCCC-------eeEEEEccCCeEEEEecc
Q 014650 221 RFRAG-------CVGFVAEESGEFWVMGGY 243 (421)
Q Consensus 221 ~~r~~-------~~~~~~~~~~~iyv~GG~ 243 (421)
..... ....+..+ +.+|+..+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 182 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISD-GRVYVSSGD 182 (238)
T ss_dssp -SS--EEEETTEEEEEECCT-TEEEEECCT
T ss_pred CCCcceeeecccccceEEEC-CEEEEEcCC
Confidence 21111 12333344 788887654
No 66
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=95.78 E-value=0.75 Score=41.37 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCcceEEEEe----CCEEEEEcccccCCCCCCCC------CCCCCCeEEEEeCccCcee--eccccCCCc
Q 014650 100 PPLPCNPSTYSLCNFTSISL----GPYIYLLGGSHFDARSFPLD------RPLPSDSAFRFNFLTFSWE--RIAPMISPR 167 (421)
Q Consensus 100 ~~l~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~------~~~~~~~v~~yd~~t~~W~--~~~~~~~~r 167 (421)
..+|.+ |++|++.++ +.-+.+|||...-... ... .......|+..|+.-...+ .++.+..+.
T Consensus 82 GdvP~a-----RYGHt~~vV~SrGKta~VlFGGRSY~P~~-qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~ 155 (337)
T PF03089_consen 82 GDVPEA-----RYGHTINVVHSRGKTACVLFGGRSYMPPG-QRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQ 155 (337)
T ss_pred CCCCcc-----cccceEEEEEECCcEEEEEECCcccCCcc-ccchhhcceeccCCCeEEEEeccccccccccchhhcCCe
Confidence 456654 999998766 2348889997642100 000 0112335777777665543 567777888
Q ss_pred cceEEEEEccCCEEEEEcCCc
Q 014650 168 GSFACAAVRSLNQIIVAGGGS 188 (421)
Q Consensus 168 ~~~~~~~~~~~~~iyv~GG~~ 188 (421)
+.|.+.+-+ +.+|++||..
T Consensus 156 SFHvslar~--D~VYilGGHs 174 (337)
T PF03089_consen 156 SFHVSLARN--DCVYILGGHS 174 (337)
T ss_pred EEEEEEecC--ceEEEEccEE
Confidence 888888877 9999999975
No 67
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.44 E-value=0.42 Score=43.83 Aligned_cols=110 Identities=13% Similarity=0.202 Sum_probs=66.5
Q ss_pred CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc
Q 014650 83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA 161 (421)
Q Consensus 83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~ 161 (421)
-..++.||+.+.+|..+..--. + .-.++... ++.||+.|-....+. ....+-.||..+.+|..++
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~-----G-~V~~l~~~~~~~Llv~G~ft~~~~--------~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGIS-----G-TVTDLQWASNNQLLVGGNFTLNGT--------NSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred CCEEEEEECCCCEeecCCCCce-----E-EEEEEEEecCCEEEEEEeeEECCC--------CceeEEEEecCCCeeeecC
Confidence 3457899999999998744311 1 11233333 788888887654431 3456889999999998876
Q ss_pred c-----cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650 162 P-----MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE 218 (421)
Q Consensus 162 ~-----~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 218 (421)
. +|.+.........+. +.+++.|... .-...+..| .-.+|+.+..
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~-~~~~~aG~~~---------~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDG-SNFWVAGRSA---------NGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CcccccCCCcEEEEEeeccCC-ceEEEeceec---------CCCceEEEE--cCCceEeccc
Confidence 6 344432222222231 4677776642 113345566 4557988765
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.22 E-value=0.16 Score=46.63 Aligned_cols=92 Identities=22% Similarity=0.408 Sum_probs=57.6
Q ss_pred CCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC----
Q 014650 143 PSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE---- 218 (421)
Q Consensus 143 ~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~---- 218 (421)
....+..||+.+.+|..+..=..+.. ..+...++ +++|+.|-... .......+-.||.++.+|+.++.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~-~~Llv~G~ft~------~~~~~~~la~yd~~~~~w~~~~~~~s~ 85 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASN-NQLLVGGNFTL------NGTNSSNLATYDFKNQTWSSLGGGSSN 85 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEE-EEEEEecC-CEEEEEEeeEE------CCCCceeEEEEecCCCeeeecCCcccc
Confidence 35678999999999998865432221 22333332 78888886542 22246678899999999988765
Q ss_pred -CCCCCCCeeEEEEccCCeEEEEecc
Q 014650 219 -MPRFRAGCVGFVAEESGEFWVMGGY 243 (421)
Q Consensus 219 -~~~~r~~~~~~~~~~~~~iyv~GG~ 243 (421)
+|.|... ..+...+.+.+++.|..
T Consensus 86 ~ipgpv~a-~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 86 SIPGPVTA-LTFISNDGSNFWVAGRS 110 (281)
T ss_pred cCCCcEEE-EEeeccCCceEEEecee
Confidence 3444321 12222333678888775
No 69
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.39 E-value=2.2 Score=41.00 Aligned_cols=99 Identities=10% Similarity=0.096 Sum_probs=54.3
Q ss_pred CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccce-EEEEEccCCE-EEEEcCCccccccCCCC
Q 014650 120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSF-ACAAVRSLNQ-IIVAGGGSRHSLFGAAG 197 (421)
Q Consensus 120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~-~~~~~~~~~~-iyv~GG~~~~~~~~~~~ 197 (421)
.-.|.+++|.+. +-.++..|-.+|. .+.++-..++-- +++...+ |. ..+.+|.
T Consensus 224 ~~plllvaG~d~------------~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~-G~~~i~~s~r---------- 278 (514)
T KOG2055|consen 224 TAPLLLVAGLDG------------TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPN-GHSVIFTSGR---------- 278 (514)
T ss_pred CCceEEEecCCC------------cEEEEEecCccCh--hheeeeeccCccceeeecCC-CceEEEeccc----------
Confidence 456888888742 3457777888777 444443322221 1222211 54 6666664
Q ss_pred CccceEEEEECCCCceEECCCCC--CCCCCeeEEEEccCCeEEEEeccCCC
Q 014650 198 SRISSVERYDVAKNEWVSMDEMP--RFRAGCVGFVAEESGEFWVMGGYGDS 246 (421)
Q Consensus 198 ~~~~~~~~yd~~t~~W~~~~~~~--~~r~~~~~~~~~~~~~iyv~GG~~~~ 246 (421)
..-++.||.++.+-+.+.++- ..+....=-+..+ +.+.++.|.++.
T Consensus 279 --rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~ 326 (514)
T KOG2055|consen 279 --RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGH 326 (514)
T ss_pred --ceEEEEeeccccccccccCCCCcccchhheeEecCC-CCeEEEcccCce
Confidence 234889999999888776542 1111111112222 567777776664
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.29 E-value=3.8 Score=36.73 Aligned_cols=90 Identities=17% Similarity=0.171 Sum_probs=53.3
Q ss_pred CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650 120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR 199 (421)
Q Consensus 120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 199 (421)
++.||+..- ....++++|+.+.+-..+.. +. ..+++....++.+|+.....
T Consensus 11 ~g~l~~~D~--------------~~~~i~~~~~~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~~~----------- 61 (246)
T PF08450_consen 11 DGRLYWVDI--------------PGGRIYRVDPDTGEVEVIDL-PG---PNGMAFDRPDGRLYVADSGG----------- 61 (246)
T ss_dssp TTEEEEEET--------------TTTEEEEEETTTTEEEEEES-SS---EEEEEEECTTSEEEEEETTC-----------
T ss_pred CCEEEEEEc--------------CCCEEEEEECCCCeEEEEec-CC---CceEEEEccCCEEEEEEcCc-----------
Confidence 577887743 24679999999987654332 22 33444441228898886642
Q ss_pred cceEEEEECCCCceEECCCCCC---CCCCeeEEEEccCCeEEEEe
Q 014650 200 ISSVERYDVAKNEWVSMDEMPR---FRAGCVGFVAEESGEFWVMG 241 (421)
Q Consensus 200 ~~~~~~yd~~t~~W~~~~~~~~---~r~~~~~~~~~~~~~iyv~G 241 (421)
..++|+.+++++.+...+. +....--+++..+|.||+-.
T Consensus 62 ---~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~ 103 (246)
T PF08450_consen 62 ---IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD 103 (246)
T ss_dssp ---EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred ---eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence 4566999999988765531 22222234444448888864
No 71
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.67 E-value=6.3 Score=37.07 Aligned_cols=111 Identities=7% Similarity=-0.025 Sum_probs=53.8
Q ss_pred ccCCceEEEeCCCCCCCccEEEeCC-CCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCC
Q 014650 68 NSQSDLLCIFPQDPSISSPFLFDAA-NRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPS 144 (421)
Q Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~d~~-~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ 144 (421)
....+.+|+.+.. ...+..|+.. ..++..+...+.+ -..+.++.. ++.||+..-. .
T Consensus 43 spd~~~lyv~~~~--~~~i~~~~~~~~g~l~~~~~~~~~-----~~p~~i~~~~~g~~l~v~~~~--------------~ 101 (330)
T PRK11028 43 SPDKRHLYVGVRP--EFRVLSYRIADDGALTFAAESPLP-----GSPTHISTDHQGRFLFSASYN--------------A 101 (330)
T ss_pred CCCCCEEEEEECC--CCcEEEEEECCCCceEEeeeecCC-----CCceEEEECCCCCEEEEEEcC--------------C
Confidence 3456777776542 2446566664 4556554433322 111223322 4567766431 2
Q ss_pred CeEEEEeCccCc--eeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650 145 DSAFRFNFLTFS--WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN 211 (421)
Q Consensus 145 ~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~ 211 (421)
+.+.+||..++. .+.+..++.....|.++...+...+|+..-. .+.+.+||..+.
T Consensus 102 ~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~------------~~~v~v~d~~~~ 158 (330)
T PRK11028 102 NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK------------EDRIRLFTLSDD 158 (330)
T ss_pred CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC------------CCEEEEEEECCC
Confidence 457777765432 1222222222333454443221466665432 346888998763
No 72
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.32 E-value=0.031 Score=50.75 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHhcCCC-----cchhHHHHhhhHhHHhhhcCCccccccc
Q 014650 21 IPGLPNDVASLILAFVP-----YSHQSRLKQTCRSWFLFFSSRTLVFDRH 65 (421)
Q Consensus 21 ~~~Lp~dl~~~~l~~lp-----~~~~~~~~~v~k~W~~l~~~~~~~~~~~ 65 (421)
+..|||||+.+||.++- ..++.++.+|||.|.....++++.+.-.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 57899999999998764 4789999999999999999999876544
No 73
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.95 E-value=6.6 Score=35.18 Aligned_cols=125 Identities=15% Similarity=0.074 Sum_probs=67.7
Q ss_pred CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec
Q 014650 83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI 160 (421)
Q Consensus 83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~ 160 (421)
...++.+|+.+.+-..+ ..+. ..+++.. ++.+|+.... .+.++|+.+.+++.+
T Consensus 21 ~~~i~~~~~~~~~~~~~-~~~~--------~~G~~~~~~~g~l~v~~~~----------------~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVI-DLPG--------PNGMAFDRPDGRLYVADSG----------------GIAVVDPDTGKVTVL 75 (246)
T ss_dssp TTEEEEEETTTTEEEEE-ESSS--------EEEEEEECTTSEEEEEETT----------------CEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCeEEEE-ecCC--------CceEEEEccCCEEEEEEcC----------------ceEEEecCCCcEEEE
Confidence 34688999998876543 2221 2334443 6888887652 356669999999988
Q ss_pred cccCC---CccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC-CCCCCCCCeeEEEEc-cCC
Q 014650 161 APMIS---PRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD-EMPRFRAGCVGFVAE-ESG 235 (421)
Q Consensus 161 ~~~~~---~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~~-~~~ 235 (421)
...+. +....--.+++.+|.||+-.-.... ........++++++. .+.+.+. .+..| -++++. +++
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~----~~~~~~g~v~~~~~~-~~~~~~~~~~~~p----NGi~~s~dg~ 146 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG----ASGIDPGSVYRIDPD-GKVTVVADGLGFP----NGIAFSPDGK 146 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC----TTCGGSEEEEEEETT-SEEEEEEEEESSE----EEEEEETTSS
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCc----cccccccceEEECCC-CeEEEEecCcccc----cceEECCcch
Confidence 77632 2233333333333888886432110 011111678999999 6655442 22222 233333 224
Q ss_pred eEEEEe
Q 014650 236 EFWVMG 241 (421)
Q Consensus 236 ~iyv~G 241 (421)
.||+.-
T Consensus 147 ~lyv~d 152 (246)
T PF08450_consen 147 TLYVAD 152 (246)
T ss_dssp EEEEEE
T ss_pred heeecc
Confidence 677754
No 74
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.80 E-value=7.4 Score=35.40 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=47.3
Q ss_pred ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEE-e-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceee-cc
Q 014650 85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSIS-L-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWER-IA 161 (421)
Q Consensus 85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~-~~ 161 (421)
.+..||+.+++-...-.... .. .+++. - +..+|+.++. ...+.+||..+.+... ++
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~------~~-~~l~~~~dg~~l~~~~~~--------------~~~v~~~d~~~~~~~~~~~ 70 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQ------RP-RGITLSKDGKLLYVCASD--------------SDTIQVIDLATGEVIGTLP 70 (300)
T ss_pred EEEEEECCCCceEEEEECCC------CC-CceEECCCCCEEEEEECC--------------CCeEEEEECCCCcEEEecc
Confidence 57888987766433212111 11 12222 2 3457777653 2468899998876543 22
Q ss_pred ccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 162 PMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
....+ ..++...+++.+|+.++.+ ..+.+||..+.+
T Consensus 71 ~~~~~---~~~~~~~~g~~l~~~~~~~------------~~l~~~d~~~~~ 106 (300)
T TIGR03866 71 SGPDP---ELFALHPNGKILYIANEDD------------NLVTVIDIETRK 106 (300)
T ss_pred CCCCc---cEEEECCCCCEEEEEcCCC------------CeEEEEECCCCe
Confidence 21111 2222222214566665432 258889988764
No 75
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.28 E-value=1.6 Score=39.30 Aligned_cols=106 Identities=18% Similarity=0.137 Sum_probs=71.7
Q ss_pred CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650 70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR 149 (421)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~ 149 (421)
....+|-..|.-..+.+..+|+.+++-....++|.. ..+-+++..+++||..-=. ....++
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-----~FgEGit~~~d~l~qLTWk--------------~~~~f~ 114 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-----YFGEGITILGDKLYQLTWK--------------EGTGFV 114 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------EEEEEEETTEEEEEESS--------------SSEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-----ccceeEEEECCEEEEEEec--------------CCeEEE
Confidence 344555555543445688999999988776677754 4677889999999998653 457899
Q ss_pred EeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCC
Q 014650 150 FNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKN 211 (421)
Q Consensus 150 yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~ 211 (421)
||+.+ .+.+..++.+.-+.+++..+ ..+|+..|. +.+..+||++-
T Consensus 115 yd~~t--l~~~~~~~y~~EGWGLt~dg--~~Li~SDGS-------------~~L~~~dP~~f 159 (264)
T PF05096_consen 115 YDPNT--LKKIGTFPYPGEGWGLTSDG--KRLIMSDGS-------------SRLYFLDPETF 159 (264)
T ss_dssp EETTT--TEEEEEEE-SSS--EEEECS--SCEEEE-SS-------------SEEEEE-TTT-
T ss_pred Ecccc--ceEEEEEecCCcceEEEcCC--CEEEEECCc-------------cceEEECCccc
Confidence 99976 55666666677888999877 889988884 35777888763
No 76
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.18 E-value=8.9 Score=34.86 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=34.1
Q ss_pred CCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650 70 QSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR 149 (421)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~ 149 (421)
..+.+|+.+.. ...+..||..+.+.... ++... .........-++.+|+.++. ...+..
T Consensus 41 dg~~l~~~~~~--~~~v~~~d~~~~~~~~~--~~~~~---~~~~~~~~~~g~~l~~~~~~--------------~~~l~~ 99 (300)
T TIGR03866 41 DGKLLYVCASD--SDTIQVIDLATGEVIGT--LPSGP---DPELFALHPNGKILYIANED--------------DNLVTV 99 (300)
T ss_pred CCCEEEEEECC--CCeEEEEECCCCcEEEe--ccCCC---CccEEEECCCCCEEEEEcCC--------------CCeEEE
Confidence 34556555442 34577899888766442 22110 01111111124567766542 246888
Q ss_pred EeCccCc
Q 014650 150 FNFLTFS 156 (421)
Q Consensus 150 yd~~t~~ 156 (421)
||..+.+
T Consensus 100 ~d~~~~~ 106 (300)
T TIGR03866 100 IDIETRK 106 (300)
T ss_pred EECCCCe
Confidence 9988754
No 77
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.22 E-value=2.1 Score=38.58 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=61.5
Q ss_pred CCCCCCCCe-eEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccc
Q 014650 218 EMPRFRAGC-VGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWER 296 (421)
Q Consensus 218 ~~~~~r~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~ 296 (421)
..|+....+ .+..+.+++.||.--|..+... +..||+.++ +=.....++. +
T Consensus 38 ~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~-------------l~~~d~~tg------------~~~~~~~l~~---~ 89 (264)
T PF05096_consen 38 TYPHDPTAFTQGLEFLDDGTLYESTGLYGQSS-------------LRKVDLETG------------KVLQSVPLPP---R 89 (264)
T ss_dssp EEE--TT-EEEEEEEEETTEEEEEECSTTEEE-------------EEEEETTTS------------SEEEEEE-TT---T
T ss_pred ECCCCCcccCccEEecCCCEEEEeCCCCCcEE-------------EEEEECCCC------------cEEEEEECCc---c
Confidence 334333333 3455523489999988776542 334555554 6555444542 2
Q ss_pred cccCeEEEEccccCCCceEEEec--CCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeec
Q 014650 297 SRIGKIVVMEDENRGRPEVFMLD--KFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLK 365 (421)
Q Consensus 297 ~~~g~i~v~GG~~~g~~~~~~~~--~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~ 365 (421)
....-+.++|+. +|.+. ....++||+.+ .+.+...+. ...+.+++..++.|++-.|.+
T Consensus 90 ~FgEGit~~~d~------l~qLTWk~~~~f~yd~~t--l~~~~~~~y---~~EGWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 90 YFGEGITILGDK------LYQLTWKEGTGFVYDPNT--LKKIGTFPY---PGEGWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp --EEEEEEETTE------EEEEESSSSEEEEEETTT--TEEEEEEE----SSS--EEEECSSCEEEE-SSS
T ss_pred ccceeEEEECCE------EEEEEecCCeEEEEcccc--ceEEEEEec---CCcceEEEcCCCEEEEECCcc
Confidence 222245666665 66553 46789999875 777776655 347889998888999888843
No 78
>PRK13684 Ycf48-like protein; Provisional
Probab=90.59 E-value=16 Score=34.67 Aligned_cols=80 Identities=13% Similarity=0.211 Sum_probs=41.0
Q ss_pred eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEE-EECCCCceEECCCCCCCCC
Q 014650 146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVER-YDVAKNEWVSMDEMPRFRA 224 (421)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~-yd~~t~~W~~~~~~~~~r~ 224 (421)
.+++=+-.-++|+.+...... .-+.+.... +..|++.|.. +. +.. .|....+|+.+.. +..+.
T Consensus 153 ~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~--~g~~v~~g~~--------G~----i~~s~~~gg~tW~~~~~-~~~~~ 216 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDAAG-VVRNLRRSP--DGKYVAVSSR--------GN----FYSTWEPGQTAWTPHQR-NSSRR 216 (334)
T ss_pred eEEEECCCCCCceeCcCCCcc-eEEEEEECC--CCeEEEEeCC--------ce----EEEEcCCCCCeEEEeeC-CCccc
Confidence 466666677899988653322 334444444 4444444432 11 222 2444567988754 22222
Q ss_pred CeeEEEEccCCeEEEEec
Q 014650 225 GCVGFVAEESGEFWVMGG 242 (421)
Q Consensus 225 ~~~~~~~~~~~~iyv~GG 242 (421)
..++....++.++++|.
T Consensus 217 -l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 217 -LQSMGFQPDGNLWMLAR 233 (334)
T ss_pred -ceeeeEcCCCCEEEEec
Confidence 22333333378888764
No 79
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=90.45 E-value=11 Score=32.56 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=12.8
Q ss_pred EEEecCCceEEEeCCCCc
Q 014650 315 VFMLDKFDILRYDMGLNR 332 (421)
Q Consensus 315 ~~~~~~~~v~~yd~~~~~ 332 (421)
.|.......++||..+++
T Consensus 161 ~yfF~g~~y~~~d~~~~~ 178 (194)
T cd00094 161 YYFFKGDQYWRFDPRSKE 178 (194)
T ss_pred EEEEECCEEEEEeCccce
Confidence 444455688999988766
No 80
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.79 E-value=29 Score=35.21 Aligned_cols=71 Identities=8% Similarity=0.147 Sum_probs=42.9
Q ss_pred EEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--eeeccccCCC--------ccceEEEEEccCCEEEEE
Q 014650 115 TSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WERIAPMISP--------RGSFACAAVRSLNQIIVA 184 (421)
Q Consensus 115 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~~~iyv~ 184 (421)
+.++.++.||+.... ..++.+|..|.+ |+.-...+.. ....+.++.+ ++||+.
T Consensus 64 tPvv~~g~vyv~s~~---------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~--~~v~v~ 126 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY---------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD--GKVFFG 126 (527)
T ss_pred CCEEECCEEEEECCC---------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC--CEEEEE
Confidence 345668999986542 357888877644 7754332211 1122345566 888875
Q ss_pred cCCccccccCCCCCccceEEEEECCCCc--eEE
Q 014650 185 GGGSRHSLFGAAGSRISSVERYDVAKNE--WVS 215 (421)
Q Consensus 185 GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~ 215 (421)
.. -..+..+|.+|.+ |+.
T Consensus 127 t~-------------dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 127 TL-------------DARLVALDAKTGKVVWSK 146 (527)
T ss_pred cC-------------CCEEEEEECCCCCEEeec
Confidence 33 1248899999886 875
No 81
>PRK04792 tolB translocation protein TolB; Provisional
Probab=88.60 E-value=27 Score=34.60 Aligned_cols=106 Identities=12% Similarity=0.079 Sum_probs=59.1
Q ss_pred CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650 83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162 (421)
Q Consensus 83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 162 (421)
...++.+|..+++-..+...+.. ........-++.|++.... + ...++|.+|..+.+.+++..
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~-----~~~~~wSPDG~~La~~~~~--~----------g~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI-----NGAPRFSPDGKKLALVLSK--D----------GQPEIYVVDIATKALTRITR 303 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC-----cCCeeECCCCCEEEEEEeC--C----------CCeEEEEEECCCCCeEECcc
Confidence 34688899888877777655421 1111222224556655432 1 13579999999988887765
Q ss_pred cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC
Q 014650 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD 217 (421)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 217 (421)
-...-...+...-+ ..|++..... + ...++.+|..+++++.+.
T Consensus 304 ~~~~~~~p~wSpDG--~~I~f~s~~~--------g--~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 304 HRAIDTEPSWHPDG--KSLIFTSERG--------G--KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred CCCCccceEECCCC--CEEEEEECCC--------C--CceEEEEECCCCCEEEEe
Confidence 32111112111112 4555543321 1 246889999999888764
No 82
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=88.57 E-value=23 Score=33.69 Aligned_cols=144 Identities=12% Similarity=0.126 Sum_probs=67.3
Q ss_pred cCCceEEEeCCCC-CCCccEEE--eCCCCcEEECCCCCCCCCCCCCcceEEEE--eCCEEEEEcccccCCCCCCCCCCCC
Q 014650 69 SQSDLLCIFPQDP-SISSPFLF--DAANRACRPLPPLPCNPSTYSLCNFTSIS--LGPYIYLLGGSHFDARSFPLDRPLP 143 (421)
Q Consensus 69 ~~~~~~~~~g~~~-~~~~~~~~--d~~~~~W~~l~~l~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~ 143 (421)
...+.+|+..... ....+..| ++.+.+.+.+...+.. +...+.++. -+..||+.--.
T Consensus 46 ~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~----g~~p~~i~~~~~g~~l~vany~-------------- 107 (345)
T PF10282_consen 46 PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSG----GSSPCHIAVDPDGRFLYVANYG-------------- 107 (345)
T ss_dssp TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEES----SSCEEEEEECTTSSEEEEEETT--------------
T ss_pred eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccC----CCCcEEEEEecCCCEEEEEEcc--------------
Confidence 4678888876642 33344444 5555677766554421 122233333 25667765321
Q ss_pred CCeEEEEeCccCc-eeecc---------cc--CCC-ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCC
Q 014650 144 SDSAFRFNFLTFS-WERIA---------PM--ISP-RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAK 210 (421)
Q Consensus 144 ~~~v~~yd~~t~~-W~~~~---------~~--~~~-r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t 210 (421)
...+.+|+...+- -.... +- ... -..|.+....++..+||..=. ...+.+|+...
T Consensus 108 ~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~ 175 (345)
T PF10282_consen 108 GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDD 175 (345)
T ss_dssp TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-T
T ss_pred CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeC
Confidence 2457777765531 11110 11 111 223444444321467776321 34577777766
Q ss_pred Cc--eEE-----CCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650 211 NE--WVS-----MDEMPRFRAGCVGFVAEESGEFWVMGGYGD 245 (421)
Q Consensus 211 ~~--W~~-----~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~ 245 (421)
.. .+. ++.-..|| |..+. .+...+||+.-..+
T Consensus 176 ~~~~l~~~~~~~~~~G~GPR--h~~f~-pdg~~~Yv~~e~s~ 214 (345)
T PF10282_consen 176 DTGKLTPVDSIKVPPGSGPR--HLAFS-PDGKYAYVVNELSN 214 (345)
T ss_dssp TS-TEEEEEEEECSTTSSEE--EEEE--TTSSEEEEEETTTT
T ss_pred CCceEEEeeccccccCCCCc--EEEEc-CCcCEEEEecCCCC
Confidence 55 544 22323344 33333 23367899875433
No 83
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=87.02 E-value=9.8 Score=36.74 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=59.8
Q ss_pred ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC
Q 014650 85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI 164 (421)
Q Consensus 85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 164 (421)
-++.||..+.+-.++.++-.-+ ......|.++-.++.|.+.|- ...+...-..|+.|..--.++
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~---------------~G~I~lLhakT~eli~s~Kie 344 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGN---------------NGHIHLLHAKTKELITSFKIE 344 (514)
T ss_pred EEEEeeccccccccccCCCCcc-cchhheeEecCCCCeEEEccc---------------CceEEeehhhhhhhhheeeec
Confidence 3789999999988886654321 011234555555665555443 234677777787776544444
Q ss_pred CCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 165 SPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 165 ~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
.-...++...-+ ..|+++||.. .|+++|..++.
T Consensus 345 G~v~~~~fsSds--k~l~~~~~~G-------------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 345 GVVSDFTFSSDS--KELLASGGTG-------------EVYVWNLRQNS 377 (514)
T ss_pred cEEeeEEEecCC--cEEEEEcCCc-------------eEEEEecCCcc
Confidence 444445555444 6788888842 58999999874
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=86.27 E-value=41 Score=34.18 Aligned_cols=45 Identities=20% Similarity=0.467 Sum_probs=39.0
Q ss_pred cccCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCcccc
Q 014650 18 VTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVF 62 (421)
Q Consensus 18 ~~~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~ 62 (421)
.-.+..||.++...+|..|+...+...+++|+.|+.+........
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 344788999999999999999999999999999999987765433
No 85
>PRK00178 tolB translocation protein TolB; Provisional
Probab=84.60 E-value=42 Score=32.87 Aligned_cols=106 Identities=5% Similarity=-0.037 Sum_probs=57.9
Q ss_pred CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650 83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162 (421)
Q Consensus 83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 162 (421)
...++.+|..+++-+.+...+.. -.......-+++|++.... + ...++|++|..+.+.+++..
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~-----~~~~~~SpDG~~la~~~~~--~----------g~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGL-----NGAPAWSPDGSKLAFVLSK--D----------GNPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCC-----cCCeEECCCCCEEEEEEcc--C----------CCceEEEEECCCCCeEEccc
Confidence 34688899988887777554421 0111111123455543321 1 12579999999998887764
Q ss_pred cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC
Q 014650 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD 217 (421)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 217 (421)
....-..+....-+ ..|++..... ....++.+|..+++++.+.
T Consensus 285 ~~~~~~~~~~spDg--~~i~f~s~~~----------g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 285 HPAIDTEPFWGKDG--RTLYFTSDRG----------GKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCCCcCCeEECCCC--CEEEEEECCC----------CCceEEEEECCCCCEEEee
Confidence 33221112211122 4566553321 1246888999888887764
No 86
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=83.88 E-value=14 Score=29.38 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=49.2
Q ss_pred CceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEE-eCCcceeeEe
Q 014650 321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIY-HPRKKTWRYI 399 (421)
Q Consensus 321 ~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~y-d~~~~~W~~i 399 (421)
..|..||..+++|+.+..............++.++|+|-++.-..... ...-+||+. |.++++|.+.
T Consensus 20 ~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~------------~~~~~iWvLeD~~k~~Wsk~ 87 (129)
T PF08268_consen 20 NVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE------------PDSIDIWVLEDYEKQEWSKK 87 (129)
T ss_pred cEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC------------cceEEEEEeeccccceEEEE
Confidence 678999999999998854212222445677889999999987543221 122478887 5778899887
Q ss_pred cc-cCC
Q 014650 400 FT-KPP 404 (421)
Q Consensus 400 ~~-~p~ 404 (421)
.. +|.
T Consensus 88 ~~~lp~ 93 (129)
T PF08268_consen 88 HIVLPP 93 (129)
T ss_pred EEECCh
Confidence 54 443
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.85 E-value=45 Score=32.56 Aligned_cols=124 Identities=14% Similarity=0.207 Sum_probs=62.2
Q ss_pred cEEEeCCCCcEEE-CCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc-eeeccc
Q 014650 86 PFLFDAANRACRP-LPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS-WERIAP 162 (421)
Q Consensus 86 ~~~~d~~~~~W~~-l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~-W~~~~~ 162 (421)
+..|+..+..=.+ +.. |.+.-+++... +|+|+.+|+. +..|.+||..+.. -+.+..
T Consensus 50 vqly~~~~~~~~k~~sr-------Fk~~v~s~~fR~DG~LlaaGD~--------------sG~V~vfD~k~r~iLR~~~a 108 (487)
T KOG0310|consen 50 VQLYSSVTRSVRKTFSR-------FKDVVYSVDFRSDGRLLAAGDE--------------SGHVKVFDMKSRVILRQLYA 108 (487)
T ss_pred EEEEecchhhhhhhHHh-------hccceeEEEeecCCeEEEccCC--------------cCcEEEeccccHHHHHHHhh
Confidence 5677766543222 111 22333344333 7999999985 4568999944421 222222
Q ss_pred cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCC-CCC-CeeEEEEccCCeEEEE
Q 014650 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPR-FRA-GCVGFVAEESGEFWVM 240 (421)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~-~~~~~~~~~~~~iyv~ 240 (421)
-..|-..-..+..+ +.+++.|+-+. .+..+|..+..= +. .+.. .-+ .+..+.-.+ +.|.+.
T Consensus 109 h~apv~~~~f~~~d--~t~l~s~sDd~------------v~k~~d~s~a~v-~~-~l~~htDYVR~g~~~~~~-~hivvt 171 (487)
T KOG0310|consen 109 HQAPVHVTKFSPQD--NTMLVSGSDDK------------VVKYWDLSTAYV-QA-ELSGHTDYVRCGDISPAN-DHIVVT 171 (487)
T ss_pred ccCceeEEEecccC--CeEEEecCCCc------------eEEEEEcCCcEE-EE-EecCCcceeEeeccccCC-CeEEEe
Confidence 22222222233455 88888888431 133445444442 11 1111 111 122333333 889999
Q ss_pred eccCCCc
Q 014650 241 GGYGDSR 247 (421)
Q Consensus 241 GG~~~~~ 247 (421)
|||++..
T Consensus 172 GsYDg~v 178 (487)
T KOG0310|consen 172 GSYDGKV 178 (487)
T ss_pred cCCCceE
Confidence 9998864
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=83.58 E-value=30 Score=30.37 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=36.7
Q ss_pred CeEEEEeCccCceeeccccCCCccce-EEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSF-ACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR 223 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 223 (421)
..+.+||..+.+-... +....... .+....+ +..+++++.+ ..+.+||..+++-... +....
T Consensus 31 g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~-~~~l~~~~~~------------~~i~i~~~~~~~~~~~--~~~~~ 93 (289)
T cd00200 31 GTIKVWDLETGELLRT--LKGHTGPVRDVAASAD-GTYLASGSSD------------KTIRLWDLETGECVRT--LTGHT 93 (289)
T ss_pred cEEEEEEeeCCCcEEE--EecCCcceeEEEECCC-CCEEEEEcCC------------CeEEEEEcCcccceEE--EeccC
Confidence 4577788766542111 11111111 2222221 4455666643 3478888887532211 11111
Q ss_pred CCeeEEEEccCCeEEEEeccCC
Q 014650 224 AGCVGFVAEESGEFWVMGGYGD 245 (421)
Q Consensus 224 ~~~~~~~~~~~~~iyv~GG~~~ 245 (421)
....++....++.+++.++.++
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~ 115 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDK 115 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCC
Confidence 1223334433246666666343
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=82.61 E-value=87 Score=34.93 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=34.6
Q ss_pred CceEEEeCCCCceeEecccCCCC---------CCCCceEEEE-eCCeEEEEEeecCCCccccccccccccceeeEEEEEe
Q 014650 321 FDILRYDMGLNRWLKETTIPEIR---------PCKKPLGFIV-LDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYH 390 (421)
Q Consensus 321 ~~v~~yd~~~~~W~~~~~~~~~~---------~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd 390 (421)
+.|.+||+.++....+......- .-....+++. -+|+|||....+ +.|.++|
T Consensus 825 ~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N------------------n~Irvid 886 (1057)
T PLN02919 825 HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN------------------SLIRYLD 886 (1057)
T ss_pred CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC------------------CEEEEEE
Confidence 57899999988877664322100 0012234433 367899987544 3678888
Q ss_pred CCcce
Q 014650 391 PRKKT 395 (421)
Q Consensus 391 ~~~~~ 395 (421)
+++++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 87764
No 90
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=82.19 E-value=44 Score=31.28 Aligned_cols=105 Identities=9% Similarity=-0.037 Sum_probs=48.9
Q ss_pred eEEEeCCCCCCCccEEEeCCC-CcEEECCCCCCCCCCCCCcceEEEE--eCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650 73 LLCIFPQDPSISSPFLFDAAN-RACRPLPPLPCNPSTYSLCNFTSIS--LGPYIYLLGGSHFDARSFPLDRPLPSDSAFR 149 (421)
Q Consensus 73 ~~~~~g~~~~~~~~~~~d~~~-~~W~~l~~l~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~ 149 (421)
++|+.... ...+..||..+ .++..+..++.. ...+.++. -++.||+.+.. ...+..
T Consensus 3 ~~y~~~~~--~~~I~~~~~~~~g~l~~~~~~~~~-----~~~~~l~~spd~~~lyv~~~~--------------~~~i~~ 61 (330)
T PRK11028 3 IVYIASPE--SQQIHVWNLNHEGALTLLQVVDVP-----GQVQPMVISPDKRHLYVGVRP--------------EFRVLS 61 (330)
T ss_pred EEEEEcCC--CCCEEEEEECCCCceeeeeEEecC-----CCCccEEECCCCCEEEEEECC--------------CCcEEE
Confidence 35555332 24466777653 566655444432 11122222 24567775431 234666
Q ss_pred EeCc-cCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCC
Q 014650 150 FNFL-TFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAK 210 (421)
Q Consensus 150 yd~~-t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t 210 (421)
|+.. +.+++.+...+.+-.-+.++...++..+|+..-. ...+.+|+..+
T Consensus 62 ~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~ 111 (330)
T PRK11028 62 YRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN------------ANCVSVSPLDK 111 (330)
T ss_pred EEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC------------CCeEEEEEECC
Confidence 6664 4456555443333211223322221456766432 23567777754
No 91
>PRK04922 tolB translocation protein TolB; Provisional
Probab=80.70 E-value=61 Score=31.90 Aligned_cols=129 Identities=10% Similarity=0.006 Sum_probs=64.7
Q ss_pred CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650 83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162 (421)
Q Consensus 83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 162 (421)
...++.+|..+++-..+...+.. ........-+.+|++.... + ...+++++|..+.+-+++..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~-----~~~~~~SpDG~~l~~~~s~--~----------g~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI-----NGAPSFSPDGRRLALTLSR--D----------GNPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC-----ccCceECCCCCEEEEEEeC--C----------CCceEEEEECCCCCeEECcc
Confidence 34588889888887777655421 1111111224456544322 1 12479999999887766654
Q ss_pred cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG 242 (421)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG 242 (421)
-...........-+ .+|++..... + ...++.+|..+++.+.+..- ..........-++++|++..+
T Consensus 290 ~~~~~~~~~~spDG--~~l~f~sd~~--------g--~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 290 HFGIDTEPTWAPDG--KSIYFTSDRG--------G--RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred CCCCccceEECCCC--CEEEEEECCC--------C--CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEEC
Confidence 32211122221112 3455443321 1 23688889888887766421 122222222333256666544
No 92
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=80.42 E-value=31 Score=32.54 Aligned_cols=78 Identities=9% Similarity=0.053 Sum_probs=41.5
Q ss_pred cCCceEEEeCC-------CCCCCccEEEeCCCCcEEECCCCCCC-CCC--CCCcceEEEEeCCEEEEEcccccCCCCCCC
Q 014650 69 SQSDLLCIFPQ-------DPSISSPFLFDAANRACRPLPPLPCN-PST--YSLCNFTSISLGPYIYLLGGSHFDARSFPL 138 (421)
Q Consensus 69 ~~~~~~~~~g~-------~~~~~~~~~~d~~~~~W~~l~~l~~~-~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 138 (421)
...+.+|+... ....+-+..||+.+-+-..=-.+|.. +.. ..+..++...-+..+||.-=
T Consensus 45 pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~---------- 114 (342)
T PF06433_consen 45 PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF---------- 114 (342)
T ss_dssp TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE----------
T ss_pred CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc----------
Confidence 44555665432 22344577999998754432233431 110 11223333333566777643
Q ss_pred CCCCCCCeEEEEeCccCceee
Q 014650 139 DRPLPSDSAFRFNFLTFSWER 159 (421)
Q Consensus 139 ~~~~~~~~v~~yd~~t~~W~~ 159 (421)
.+..+|-+-|...++...
T Consensus 115 ---TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 115 ---TPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp ---SSSEEEEEEETTTTEEEE
T ss_pred ---CCCCeEEEEECCCCceee
Confidence 367789999999988654
No 93
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=78.89 E-value=75 Score=31.89 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=40.8
Q ss_pred EEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc--eeeccccCCCc-----cceEEEEEccCCEEEEEcCC
Q 014650 115 TSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS--WERIAPMISPR-----GSFACAAVRSLNQIIVAGGG 187 (421)
Q Consensus 115 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r-----~~~~~~~~~~~~~iyv~GG~ 187 (421)
+.++.+++||+.... ..++.+|..|.+ |+.-...+..+ ....+++.+. ++||+...
T Consensus 56 sPvv~~g~vy~~~~~---------------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~-~~V~v~~~- 118 (488)
T cd00216 56 TPLVVDGDMYFTTSH---------------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDP-RKVFFGTF- 118 (488)
T ss_pred CCEEECCEEEEeCCC---------------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccC-CeEEEecC-
Confidence 445779999986542 358888887654 87533222111 1111222221 56665432
Q ss_pred ccccccCCCCCccceEEEEECCCCc--eEEC
Q 014650 188 SRHSLFGAAGSRISSVERYDVAKNE--WVSM 216 (421)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~ 216 (421)
...+..+|.++.+ |+.-
T Consensus 119 ------------~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 119 ------------DGRLVALDAETGKQVWKFG 137 (488)
T ss_pred ------------CCeEEEEECCCCCEeeeec
Confidence 2358889998875 8764
No 94
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=78.59 E-value=51 Score=29.77 Aligned_cols=83 Identities=17% Similarity=0.373 Sum_probs=49.7
Q ss_pred cCCceEEEeCCCCceeEecccCCCCCC---------CCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEE
Q 014650 319 DKFDILRYDMGLNRWLKETTIPEIRPC---------KKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIY 389 (421)
Q Consensus 319 ~~~~v~~yd~~~~~W~~~~~~~~~~~~---------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~y 389 (421)
.+..|.+||..++.-.....+|..... ....-+++.++-|+|+=...+... ...|-+.
T Consensus 87 ~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-------------~ivvskl 153 (250)
T PF02191_consen 87 NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-------------NIVVSKL 153 (250)
T ss_pred CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-------------cEEEEee
Confidence 357899999999877744445543211 111335666778888865443321 1345566
Q ss_pred eCC----cceeeEecccCCCCCCCCccceeEEEe
Q 014650 390 HPR----KKTWRYIFTKPPFPQPLDFGTAIMCTV 419 (421)
Q Consensus 390 d~~----~~~W~~i~~~p~~~~~~~~~~~~~~~~ 419 (421)
||+ ..+|..- .+.+...++.++|+|
T Consensus 154 d~~tL~v~~tw~T~-----~~k~~~~naFmvCGv 182 (250)
T PF02191_consen 154 DPETLSVEQTWNTS-----YPKRSAGNAFMVCGV 182 (250)
T ss_pred CcccCceEEEEEec-----cCchhhcceeeEeeE
Confidence 665 4578652 244567778888876
No 95
>smart00284 OLF Olfactomedin-like domains.
Probab=77.06 E-value=57 Score=29.50 Aligned_cols=76 Identities=7% Similarity=0.025 Sum_probs=48.4
Q ss_pred CCEEEEEcccccCCCCCCCCCCCCCCeEEEEe----CccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCC
Q 014650 120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFN----FLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGA 195 (421)
Q Consensus 120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd----~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 195 (421)
++++|++.+... ..+.++.|. ....++.+.-.+|.+-.+-+.++.+ |.+|.--..
T Consensus 34 ~~~~wv~~~~~~-----------~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYn--gslYY~~~~-------- 92 (255)
T smart00284 34 KSLYWYMPLNTR-----------VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYN--GSLYFNKFN-------- 92 (255)
T ss_pred CceEEEEccccC-----------CCcEEEEecCHHHHhccCCceEEECCCccccccEEEEC--ceEEEEecC--------
Confidence 468998876521 134566664 3334444444467777777888888 999875432
Q ss_pred CCCccceEEEEECCCCceEECCCCC
Q 014650 196 AGSRISSVERYDVAKNEWVSMDEMP 220 (421)
Q Consensus 196 ~~~~~~~~~~yd~~t~~W~~~~~~~ 220 (421)
...+-+||..+++-.....+|
T Consensus 93 ----s~~iiKydL~t~~v~~~~~Lp 113 (255)
T smart00284 93 ----SHDICRFDLTTETYQKEPLLN 113 (255)
T ss_pred ----CccEEEEECCCCcEEEEEecC
Confidence 356999999999864433333
No 96
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=76.83 E-value=87 Score=31.55 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=35.3
Q ss_pred CCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 144 SDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 144 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
..+||++|....+|-+ |+..--..--++.++.-+.|+++||.+ ..||.+|+.+.+
T Consensus 154 g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~------------g~VEfwDpR~ks 208 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTED------------GVVEFWDPRDKS 208 (703)
T ss_pred CcceEEEEcccccccc--ccccccccceeeeecCccceEEecccC------------ceEEEecchhhh
Confidence 3679999999998853 332222233334443225788888864 348899998865
No 97
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=76.72 E-value=33 Score=27.19 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=53.0
Q ss_pred EeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc---CCCccceEEEEEccCCEEEEEcCCccccccC
Q 014650 118 SLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM---ISPRGSFACAAVRSLNQIIVAGGGSRHSLFG 194 (421)
Q Consensus 118 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~ 194 (421)
.++|-||-..-. .. .....+..||..+++|+.+... ........++.++ |+|-++.-...
T Consensus 3 cinGvly~~a~~-~~---------~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~--G~L~~v~~~~~----- 65 (129)
T PF08268_consen 3 CINGVLYWLAWS-ED---------SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYK--GKLALVSYNDQ----- 65 (129)
T ss_pred EECcEEEeEEEE-CC---------CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeC--CeEEEEEecCC-----
Confidence 467888876654 11 1356799999999999887642 2345667788888 99888765431
Q ss_pred CCCCccceEEEE-ECCCCceEEC
Q 014650 195 AAGSRISSVERY-DVAKNEWVSM 216 (421)
Q Consensus 195 ~~~~~~~~~~~y-d~~t~~W~~~ 216 (421)
.....-++++. |.++.+|.+.
T Consensus 66 -~~~~~~~iWvLeD~~k~~Wsk~ 87 (129)
T PF08268_consen 66 -GEPDSIDIWVLEDYEKQEWSKK 87 (129)
T ss_pred -CCcceEEEEEeeccccceEEEE
Confidence 11123456665 4667789864
No 98
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=74.43 E-value=80 Score=29.94 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=43.3
Q ss_pred eEEEEeCccCceeeccccCCCccceEEEEE-ccCCEEEEEcCCccccccCCCCCccceEEEEE--CCCCceEECCCCCCC
Q 014650 146 SAFRFNFLTFSWERIAPMISPRGSFACAAV-RSLNQIIVAGGGSRHSLFGAAGSRISSVERYD--VAKNEWVSMDEMPRF 222 (421)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd--~~t~~W~~~~~~~~~ 222 (421)
.++.||..+.+++.+......- .++..++ .+++.||++.... .....+..|. .++.+.+.+...+..
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~-~Ps~l~~~~~~~~LY~~~e~~---------~~~g~v~~~~i~~~~g~L~~~~~~~~~ 85 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGE-NPSWLAVSPDGRRLYVVNEGS---------GDSGGVSSYRIDPDTGTLTLLNSVPSG 85 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESS-SECCEEE-TTSSEEEEEETTS---------STTTEEEEEEEETTTTEEEEEEEEEES
T ss_pred EEEEEcCCCCCceEeeeecCCC-CCceEEEEeCCCEEEEEEccc---------cCCCCEEEEEECCCcceeEEeeeeccC
Confidence 3455677999998776543221 2222222 1127899986642 1133455554 444677776655532
Q ss_pred CCCeeEEEE-ccCCeEEEEe
Q 014650 223 RAGCVGFVA-EESGEFWVMG 241 (421)
Q Consensus 223 r~~~~~~~~-~~~~~iyv~G 241 (421)
....+.+.+ .++..||+..
T Consensus 86 g~~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEecCCCEEEEEE
Confidence 222222333 2325566653
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=72.05 E-value=1e+02 Score=29.99 Aligned_cols=82 Identities=9% Similarity=0.115 Sum_probs=45.2
Q ss_pred eEEEEeCccCceeeccccCCCcc-ceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650 146 SAFRFNFLTFSWERIAPMISPRG-SFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA 224 (421)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~r~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 224 (421)
+|..||....+ .++.++.+-. .-....++..|...+++|.+ -.++.|+..+..|+.+..++.--.
T Consensus 412 ~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~------------l~Vy~~~k~~k~W~~~~~~~~~sg 477 (506)
T KOG0289|consen 412 SVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD------------LQVYICKKKTKSWTEIKELADHSG 477 (506)
T ss_pred eEEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecce------------eEEEEEecccccceeeehhhhccc
Confidence 48899987655 3333333322 22222233226677777753 247888899999999877654332
Q ss_pred CeeEEEEccCCeEEEEec
Q 014650 225 GCVGFVAEESGEFWVMGG 242 (421)
Q Consensus 225 ~~~~~~~~~~~~iyv~GG 242 (421)
-..++-+.. ..-|++-|
T Consensus 478 ~st~v~Fg~-~aq~l~s~ 494 (506)
T KOG0289|consen 478 LSTGVRFGE-HAQYLAST 494 (506)
T ss_pred ccceeeecc-cceEEeec
Confidence 233444443 34455443
No 100
>PRK04792 tolB translocation protein TolB; Provisional
Probab=71.79 E-value=1.1e+02 Score=30.34 Aligned_cols=62 Identities=10% Similarity=0.106 Sum_probs=37.6
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE 218 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 218 (421)
..+|++|..+.+-+.+...+..-......--+ ..|++....+ ....++.+|.++++.+.+..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG--~~La~~~~~~----------g~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDG--KKLALVLSKD----------GQPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCC--CEEEEEEeCC----------CCeEEEEEECCCCCeEECcc
Confidence 57999999888776666554322222222222 4566554322 12468899999998887754
No 101
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=69.83 E-value=93 Score=29.93 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=31.6
Q ss_pred eEEEEeCCeEEEEEeecCCCcccc-ccccccccceeeEEEEEeCCcceeeEecccCC
Q 014650 349 LGFIVLDGELYVMTVLKGSDLNET-RRSQQHKRAGCLFIQIYHPRKKTWRYIFTKPP 404 (421)
Q Consensus 349 ~~~~~~~~~lyv~GG~~~~~~~~~-~~~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~ 404 (421)
.-.+...|+|+++........... ...........-.|+..|.+..+|.++.+++.
T Consensus 250 ~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 250 RRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred eeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 346777899999987532210000 00000001122356667999999999998874
No 102
>PTZ00421 coronin; Provisional
Probab=69.01 E-value=1.3e+02 Score=30.22 Aligned_cols=54 Identities=11% Similarity=0.163 Sum_probs=27.4
Q ss_pred CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS 246 (421)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~ 246 (421)
+.+++.||.+ ..+.+||..+.+-.. .+........++.+..++.+.+.|+.++.
T Consensus 138 ~~iLaSgs~D------------gtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~Dg~ 191 (493)
T PTZ00421 138 MNVLASAGAD------------MVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKDKK 191 (493)
T ss_pred CCEEEEEeCC------------CEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCCCE
Confidence 3567777754 247888988765321 11111111223333323677777776553
No 103
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=65.95 E-value=1.3e+02 Score=29.05 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=36.8
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCC
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM 219 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~ 219 (421)
..++++|..+.+-..+..........+...-+ ..|++....+ ....++.+|..++..+.+...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg--~~l~~~~~~~----------~~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDG--SKLAVSLSKD----------GNPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCC--CEEEEEECCC----------CCccEEEEECCCCCEEECCCC
Confidence 57999999888766665543332222211112 3566554321 124688899998887776543
No 104
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.00 E-value=1.2e+02 Score=28.12 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=57.5
Q ss_pred ECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCC--------CCCCCeEEEEeCccCc----eeeccccCC
Q 014650 98 PLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDR--------PLPSDSAFRFNFLTFS----WERIAPMIS 165 (421)
Q Consensus 98 ~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~--------~~~~~~v~~yd~~t~~----W~~~~~~~~ 165 (421)
.+.+.|.. -+-.+.++...++.|| |||+-.......... ..-.+.|..||..+++ |++--.-+.
T Consensus 27 lvG~~P~S---GGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~ 102 (339)
T PF09910_consen 27 LVGPPPTS---GGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKT 102 (339)
T ss_pred eccCCCCC---CCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCcc
Confidence 44444432 2345566667788888 787642211110000 0123568899988876 654332222
Q ss_pred CccceEE-EEEcc-CCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC
Q 014650 166 PRGSFAC-AAVRS-LNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR 223 (421)
Q Consensus 166 ~r~~~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 223 (421)
.-++-.. ..++. ++.|++.-+- +-..--++..|..+..=+.+..-|.++
T Consensus 103 ~WaGEVSdIlYdP~~D~LLlAR~D---------Gh~nLGvy~ldr~~g~~~~L~~~ps~K 153 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRLLLARAD---------GHANLGVYSLDRRTGKAEKLSSNPSLK 153 (339)
T ss_pred ccccchhheeeCCCcCEEEEEecC---------CcceeeeEEEcccCCceeeccCCCCcC
Confidence 1111111 11111 1677776441 122334777888888877777766654
No 105
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=64.14 E-value=82 Score=29.43 Aligned_cols=122 Identities=13% Similarity=0.087 Sum_probs=70.7
Q ss_pred ccEEEeCCCC-----cEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc-ee
Q 014650 85 SPFLFDAANR-----ACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS-WE 158 (421)
Q Consensus 85 ~~~~~d~~~~-----~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~-W~ 158 (421)
.+..|+.... +...+.....+ -.-.+++..+++|.+..| +.+.+|+...++ +.
T Consensus 63 ri~v~~i~~~~~~~~~l~~i~~~~~~-----g~V~ai~~~~~~lv~~~g----------------~~l~v~~l~~~~~l~ 121 (321)
T PF03178_consen 63 RILVFEISESPENNFKLKLIHSTEVK-----GPVTAICSFNGRLVVAVG----------------NKLYVYDLDNSKTLL 121 (321)
T ss_dssp EEEEEEECSS-----EEEEEEEEEES-----S-EEEEEEETTEEEEEET----------------TEEEEEEEETTSSEE
T ss_pred EEEEEEEEcccccceEEEEEEEEeec-----CcceEhhhhCCEEEEeec----------------CEEEEEEccCcccch
Confidence 3678887774 55554333321 234567777888776666 358888888888 88
Q ss_pred eccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEE
Q 014650 159 RIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFW 238 (421)
Q Consensus 159 ~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iy 238 (421)
..+.+..+-....+.+.+ +.|++..-.. .-.+..|+.+..+-..++.-..++...++..+.+ +..+
T Consensus 122 ~~~~~~~~~~i~sl~~~~--~~I~vgD~~~-----------sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d-~~~~ 187 (321)
T PF03178_consen 122 KKAFYDSPFYITSLSVFK--NYILVGDAMK-----------SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVD-EDTI 187 (321)
T ss_dssp EEEEE-BSSSEEEEEEET--TEEEEEESSS-----------SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-S-SSEE
T ss_pred hhheecceEEEEEEeccc--cEEEEEEccc-----------CEEEEEEEccCCEEEEEEecCCCccEEEEEEecC-CcEE
Confidence 888876666666677777 7666443321 2234567876666666665555554333444424 3444
Q ss_pred EEe
Q 014650 239 VMG 241 (421)
Q Consensus 239 v~G 241 (421)
+++
T Consensus 188 i~~ 190 (321)
T PF03178_consen 188 IVG 190 (321)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 106
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.55 E-value=1.3e+02 Score=28.06 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=60.8
Q ss_pred eEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccc--eEEEEEccCCE-EEEEcCCc
Q 014650 114 FTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGS--FACAAVRSLNQ-IIVAGGGS 188 (421)
Q Consensus 114 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~--~~~~~~~~~~~-iyv~GG~~ 188 (421)
|.++.. ...+.+|+-. +-.-..+||+.+.+=...-..+..|.. |++..-+ ++ +|.. -.+
T Consensus 8 H~~a~~p~~~~avafaRR-------------PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~d--G~~LytT-End 71 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARR-------------PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPD--GRLLYTT-END 71 (305)
T ss_pred cceeeCCCCCeEEEEEeC-------------CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCC--CCEEEEe-ccc
Confidence 444444 4677778763 345688999999875543334566654 4444443 54 5544 222
Q ss_pred cccccCCCCCccceEEEEECCCCceEECCCCCCCCCC-eeEEEEccCCeEEEE-eccCC
Q 014650 189 RHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAG-CVGFVAEESGEFWVM-GGYGD 245 (421)
Q Consensus 189 ~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~~~~~~iyv~-GG~~~ 245 (421)
......-+-+||.. ++.+++.+.+..--+ |-.....+...|.|. ||...
T Consensus 72 -------~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~T 122 (305)
T PF07433_consen 72 -------YETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIET 122 (305)
T ss_pred -------cCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCcc
Confidence 12234457789999 677777766544333 444444442255554 45433
No 107
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=62.78 E-value=1.5e+02 Score=28.42 Aligned_cols=80 Identities=10% Similarity=-0.018 Sum_probs=45.3
Q ss_pred cccCCceEEEeCC-------CCCCCccEEEeCCCCcEEECCCCCCCCC-CCC--CcceEEEEeCCEEEEEcccccCCCCC
Q 014650 67 FNSQSDLLCIFPQ-------DPSISSPFLFDAANRACRPLPPLPCNPS-TYS--LCNFTSISLGPYIYLLGGSHFDARSF 136 (421)
Q Consensus 67 ~~~~~~~~~~~g~-------~~~~~~~~~~d~~~~~W~~l~~l~~~~~-~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~ 136 (421)
+....+.+|+... +...+.+..||+.+.+-..--++|..|. ... ...++...-+..|||.-=
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-------- 124 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-------- 124 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC--------
Confidence 5566777887654 2234668899999987653223332110 001 112333333456777632
Q ss_pred CCCCCCCCCeEEEEeCccCceee
Q 014650 137 PLDRPLPSDSAFRFNFLTFSWER 159 (421)
Q Consensus 137 ~~~~~~~~~~v~~yd~~t~~W~~ 159 (421)
...+.|-+.|..+++-..
T Consensus 125 -----~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 125 -----SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred -----CCCCEEEEEECCCCcEEE
Confidence 135789999999987554
No 108
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=61.80 E-value=94 Score=28.07 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=35.6
Q ss_pred EEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccC-CCccceEEEEEccCCEEEEEcCCc
Q 014650 116 SISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMI-SPRGSFACAAVRSLNQIIVAGGGS 188 (421)
Q Consensus 116 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~~~iyv~GG~~ 188 (421)
+-..++.||+.--..... ..-+.+.+.+..-..|..+.-.. .-....-.+.++ +.||++|...
T Consensus 196 vkyY~g~LyLtTRgt~~~--------~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvg--D~l~mFgsER 259 (367)
T PF12217_consen 196 VKYYDGVLYLTTRGTLPT--------NPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVG--DVLYMFGSER 259 (367)
T ss_dssp EEEETTEEEEEEEES-TT--------S---EEEEESSTTSS-EEEE-TT---SS---EEEET--TEEEEEEE-S
T ss_pred hhhhCCEEEEEEcCcCCC--------CCcceeeeecccCCchhhccccccccccCCCceeeC--CEEEEEeccc
Confidence 335699999987543221 24467888888888898765321 113344566778 9999998643
No 109
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=61.07 E-value=1.5e+02 Score=28.08 Aligned_cols=145 Identities=13% Similarity=0.207 Sum_probs=75.0
Q ss_pred CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCccccccccceee
Q 014650 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEY 258 (421)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 258 (421)
..+.+-||.+ .....++..++.|- ..++.-.....++.+..++.+.+-|+..+..
T Consensus 76 ~~l~aTGGgD------------D~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdmsG~v----------- 130 (399)
T KOG0296|consen 76 NNLVATGGGD------------DLAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMSGKV----------- 130 (399)
T ss_pred CceEEecCCC------------ceEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCCccE-----------
Confidence 7788888864 23677888888863 2233223233333333337788888877653
Q ss_pred echheehhhhccCCcCCCCCCCCCCceEecCccccccc--cccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEe
Q 014650 259 YRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWER--SRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKE 336 (421)
Q Consensus 259 ~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~--~~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~ 336 (421)
.+|+..++ ..+|.....+..-.+- ...+.+++.|.. + ..+|.|...+..-.++
T Consensus 131 ----~v~~~stg----------~~~~~~~~e~~dieWl~WHp~a~illAG~~-D----------GsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 131 ----LVFKVSTG----------GEQWKLDQEVEDIEWLKWHPRAHILLAGST-D----------GSVWMWQIPSQALCKV 185 (399)
T ss_pred ----EEEEcccC----------ceEEEeecccCceEEEEecccccEEEeecC-C----------CcEEEEECCCcceeeE
Confidence 23333332 1255543222111010 112556666654 2 4678887776522222
Q ss_pred cccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcc
Q 014650 337 TTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKK 394 (421)
Q Consensus 337 ~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 394 (421)
|+.. ..+...+...-+|+..+.|=.+ ..|.+||+.+.
T Consensus 186 --~~Gh-~~~ct~G~f~pdGKr~~tgy~d------------------gti~~Wn~ktg 222 (399)
T KOG0296|consen 186 --MSGH-NSPCTCGEFIPDGKRILTGYDD------------------GTIIVWNPKTG 222 (399)
T ss_pred --ecCC-CCCcccccccCCCceEEEEecC------------------ceEEEEecCCC
Confidence 3221 1234444555567776666433 25677777766
No 110
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=60.90 E-value=1.3e+02 Score=29.28 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=63.2
Q ss_pred cCCceEEEeCCCCCC-CccEEEeCCCC-----cEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCC
Q 014650 69 SQSDLLCIFPQDPSI-SSPFLFDAANR-----ACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPL 142 (421)
Q Consensus 69 ~~~~~~~~~g~~~~~-~~~~~~d~~~~-----~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 142 (421)
..++++++....... +.++..|.... .|..+.+-.. -..+.+...++.+|+....+.
T Consensus 236 ~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~------~~~~~v~~~~~~~yi~Tn~~a----------- 298 (414)
T PF02897_consen 236 KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED------GVEYYVDHHGDRLYILTNDDA----------- 298 (414)
T ss_dssp TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS------S-EEEEEEETTEEEEEE-TT------------
T ss_pred CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC------ceEEEEEccCCEEEEeeCCCC-----------
Confidence 345566654444444 67888888875 7877743111 123344455889998876322
Q ss_pred CCCeEEEEeCccCc---eee-ccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECC
Q 014650 143 PSDSAFRFNFLTFS---WER-IAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVA 209 (421)
Q Consensus 143 ~~~~v~~yd~~t~~---W~~-~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~ 209 (421)
....+..++..+.. |.. +.+-.....--.+.+.+ ++|++.-=. .....+.+++..
T Consensus 299 ~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~--~~Lvl~~~~----------~~~~~l~v~~~~ 357 (414)
T PF02897_consen 299 PNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK--DYLVLSYRE----------NGSSRLRVYDLD 357 (414)
T ss_dssp TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET--TEEEEEEEE----------TTEEEEEEEETT
T ss_pred CCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC--CEEEEEEEE----------CCccEEEEEECC
Confidence 34568888877665 663 33322223334445556 777766432 225678899999
No 111
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=59.67 E-value=2.5e+02 Score=30.10 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=13.3
Q ss_pred CCceEEEeCCCC--ceeEec
Q 014650 320 KFDILRYDMGLN--RWLKET 337 (421)
Q Consensus 320 ~~~v~~yd~~~~--~W~~~~ 337 (421)
.+.|...|.++. .|....
T Consensus 413 ~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQT 432 (764)
T ss_pred cceEEEEeCCCCceEEEecc
Confidence 467889998876 587754
No 112
>PF13013 F-box-like_2: F-box-like domain
Probab=56.79 E-value=16 Score=28.18 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=24.6
Q ss_pred CCCChHHHHHHHhcCCCcchhHHHHhhhH
Q 014650 21 IPGLPNDVASLILAFVPYSHQSRLKQTCR 49 (421)
Q Consensus 21 ~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k 49 (421)
+.+||+||++.|+.......+..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 77899999999999998888877666666
No 113
>smart00284 OLF Olfactomedin-like domains.
Probab=56.74 E-value=1.5e+02 Score=26.78 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=58.5
Q ss_pred CcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCC----ccc--------eEEEEEccC
Q 014650 111 LCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISP----RGS--------FACAAVRSL 178 (421)
Q Consensus 111 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~----r~~--------~~~~~~~~~ 178 (421)
-.+.+.++.+|.+|.--. .+..+.+||..+++-.....+|.+ +.. .-+++..
T Consensus 74 ~~GtG~VVYngslYY~~~--------------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE-- 137 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKF--------------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDE-- 137 (255)
T ss_pred cccccEEEECceEEEEec--------------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcC--
Confidence 456677888999997543 246799999999886544444432 111 2234444
Q ss_pred CEEEEEcCCccccccCCCCCccceEEEEECCC----CceEECCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAK----NEWVSMDEMPRFRAGCVGFVAEESGEFWVMGG 242 (421)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t----~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG 242 (421)
+-|.|+=.... ....-.+-..|+.+ .+|.. ..+.+.. .-+++++ |.||++-.
T Consensus 138 ~GLWvIYat~~-------~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa-~naFmvC--GvLY~~~s 193 (255)
T smart00284 138 NGLWVIYATEQ-------NAGKIVISKLNPATLTIENTWIT--TYNKRSA-SNAFMIC--GILYVTRS 193 (255)
T ss_pred CceEEEEeccC-------CCCCEEEEeeCcccceEEEEEEc--CCCcccc-cccEEEe--eEEEEEcc
Confidence 55666633210 01112234566665 35765 3333332 2455555 89999964
No 114
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=54.90 E-value=3.5e+02 Score=30.33 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=22.6
Q ss_pred eCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeEecc
Q 014650 354 LDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRYIFT 401 (421)
Q Consensus 354 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~ 401 (421)
-+|.|||....+ ..|.+||++++....+..
T Consensus 813 ~dG~LYVADs~N------------------~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 813 KDGQIYVADSYN------------------HKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred CCCcEEEEECCC------------------CEEEEEECCCCeEEEEec
Confidence 457899987544 479999999888876653
No 115
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=53.60 E-value=1.8e+02 Score=26.68 Aligned_cols=184 Identities=15% Similarity=0.132 Sum_probs=87.7
Q ss_pred ccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe--CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650 85 SPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL--GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162 (421)
Q Consensus 85 ~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 162 (421)
-+.++|+++..-+.. ++|.. -+-.+.-.++. .+.|+..|-....+ +.||.++.-+..+.
T Consensus 125 aI~R~dpkt~evt~f-~lp~~---~a~~nlet~vfD~~G~lWFt~q~G~yG---------------rLdPa~~~i~vfpa 185 (353)
T COG4257 125 AIGRLDPKTLEVTRF-PLPLE---HADANLETAVFDPWGNLWFTGQIGAYG---------------RLDPARNVISVFPA 185 (353)
T ss_pred eeEEecCcccceEEe-ecccc---cCCCcccceeeCCCccEEEeeccccce---------------ecCcccCceeeecc
Confidence 456777776666555 33322 11223333444 35677666532221 45676666544443
Q ss_pred cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC-CCeeEEEEccCCeEEEEe
Q 014650 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR-AGCVGFVAEESGEFWVMG 241 (421)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~~~~~~~iyv~G 241 (421)
|..-.-+++|+--+ +.+|+..=. -+.+-..|+.+..=+.++. |.+. .+...+-.+--+.+++.-
T Consensus 186 -PqG~gpyGi~atpd-Gsvwyasla------------gnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~witt 250 (353)
T COG4257 186 -PQGGGPYGICATPD-GSVWYASLA------------GNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITT 250 (353)
T ss_pred -CCCCCCcceEECCC-CcEEEEecc------------ccceEEcccccCCcceecC-CCcccccccccccCccCcEEEec
Confidence 34433445555433 888876221 1225556777764333322 3331 111122222125666652
Q ss_pred ccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccccCeEEEEccccCCCceEEE--ec
Q 014650 242 GYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVMEDENRGRPEVFM--LD 319 (421)
Q Consensus 242 G~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~g~i~v~GG~~~g~~~~~~--~~ 319 (421)
-.++ .++.| ||.+..|.+-+- |. .......++| +....++. .+
T Consensus 251 wg~g---------------~l~rf------------dPs~~sW~eypL-Pg--s~arpys~rV-----D~~grVW~sea~ 295 (353)
T COG4257 251 WGTG---------------SLHRF------------DPSVTSWIEYPL-PG--SKARPYSMRV-----DRHGRVWLSEAD 295 (353)
T ss_pred cCCc---------------eeeEe------------CcccccceeeeC-CC--CCCCcceeee-----ccCCcEEeeccc
Confidence 1111 13344 444559988752 22 1222222332 11111222 23
Q ss_pred CCceEEEeCCCCceeEec
Q 014650 320 KFDILRYDMGLNRWLKET 337 (421)
Q Consensus 320 ~~~v~~yd~~~~~W~~~~ 337 (421)
.+.|.+||+++.+.+.+.
T Consensus 296 agai~rfdpeta~ftv~p 313 (353)
T COG4257 296 AGAIGRFDPETARFTVLP 313 (353)
T ss_pred cCceeecCcccceEEEec
Confidence 478999999999999874
No 116
>PRK05137 tolB translocation protein TolB; Provisional
Probab=53.39 E-value=2.3e+02 Score=27.80 Aligned_cols=106 Identities=8% Similarity=0.007 Sum_probs=57.3
Q ss_pred CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650 84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM 163 (421)
Q Consensus 84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 163 (421)
..++.+|..+++...+...+.. ........-+..|++.... + ...++|.+|..+..-+++...
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~-----~~~~~~SPDG~~la~~~~~--~----------g~~~Iy~~d~~~~~~~~Lt~~ 288 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGM-----TFAPRFSPDGRKVVMSLSQ--G----------GNTDIYTMDLRSGTTTRLTDS 288 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCc-----ccCcEECCCCCEEEEEEec--C----------CCceEEEEECCCCceEEccCC
Confidence 5688999988888877655532 1111221223455544322 1 135799999998887777653
Q ss_pred CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650 164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE 218 (421)
Q Consensus 164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 218 (421)
+..-.......-+ .+|++..... ....++++|..+...+.+..
T Consensus 289 ~~~~~~~~~spDG--~~i~f~s~~~----------g~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 289 PAIDTSPSYSPDG--SQIVFESDRS----------GSPQLYVMNADGSNPRRISF 331 (435)
T ss_pred CCccCceeEcCCC--CEEEEEECCC----------CCCeEEEEECCCCCeEEeec
Confidence 3221112222112 3454433211 12468888988877766643
No 117
>PRK00178 tolB translocation protein TolB; Provisional
Probab=52.73 E-value=2.3e+02 Score=27.63 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=36.4
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE 218 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 218 (421)
..++++|..+.+-+.+...+..-......--+ .+|++....+ + ...++++|..++..+.+..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG--~~la~~~~~~--------g--~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDG--SKLAFVLSKD--------G--NPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCC--CEEEEEEccC--------C--CceEEEEECCCCCeEEccc
Confidence 47999999988877776543221111111112 3555443221 1 2468899999998887754
No 118
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=51.56 E-value=22 Score=21.45 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=16.0
Q ss_pred eEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCc
Q 014650 349 LGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRK 393 (421)
Q Consensus 349 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~ 393 (421)
.+.++.++.||+.+. + ..++++|+++
T Consensus 15 ~~~~v~~g~vyv~~~-d------------------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG-D------------------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T-T------------------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcC-C------------------CEEEEEeCCC
Confidence 455677888888775 2 2688888764
No 119
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=51.53 E-value=2.3e+02 Score=27.31 Aligned_cols=105 Identities=9% Similarity=0.008 Sum_probs=56.1
Q ss_pred CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650 84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM 163 (421)
Q Consensus 84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 163 (421)
..++.+|..+++-..+...+.. ....+...-++.|++..... ....++.+|..+...+++...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~-----~~~~~~spDg~~l~~~~~~~------------~~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM-----NGAPAFSPDGSKLAVSLSKD------------GNPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC-----ccceEECCCCCEEEEEECCC------------CCccEEEEECCCCCEEECCCC
Confidence 4578888888776666544321 11111111234566553321 135699999998887777543
Q ss_pred CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC
Q 014650 164 ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD 217 (421)
Q Consensus 164 ~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 217 (421)
...........-+ .+|++..... + ...++++|..+..++.+.
T Consensus 277 ~~~~~~~~~s~dg--~~l~~~s~~~--------g--~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 277 PGIDTEPSWSPDG--KSIAFTSDRG--------G--SPQIYMMDADGGEVRRLT 318 (417)
T ss_pred CCCCCCEEECCCC--CEEEEEECCC--------C--CceEEEEECCCCCEEEee
Confidence 3222122211112 4555544321 1 236888999888877664
No 120
>PRK04043 tolB translocation protein TolB; Provisional
Probab=51.27 E-value=2.5e+02 Score=27.57 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=46.0
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA 224 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 224 (421)
.++|++|..+.+=+.+...+..-.......-+ .+|.+.-... ....++.+|..++.++.+...+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG--~~la~~~~~~----------g~~~Iy~~dl~~g~~~~LT~~~~~-- 278 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDG--SKLLLTMAPK----------GQPDIYLYDTNTKTLTQITNYPGI-- 278 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEeeEECCCC--CEEEEEEccC----------CCcEEEEEECCCCcEEEcccCCCc--
Confidence 47888998887766665432211111111112 3555443321 135799999999999888654431
Q ss_pred CeeEEEEccCCeEEEEecc
Q 014650 225 GCVGFVAEESGEFWVMGGY 243 (421)
Q Consensus 225 ~~~~~~~~~~~~iyv~GG~ 243 (421)
.......-++.+||+....
T Consensus 279 d~~p~~SPDG~~I~F~Sdr 297 (419)
T PRK04043 279 DVNGNFVEDDKRIVFVSDR 297 (419)
T ss_pred cCccEECCCCCEEEEEECC
Confidence 1122233333567776543
No 121
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=51.26 E-value=2.3e+02 Score=27.22 Aligned_cols=54 Identities=19% Similarity=0.052 Sum_probs=30.4
Q ss_pred CCeEEEEeCccCceeeccccCCCccceEEEEEccC-CEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 144 SDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSL-NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 144 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
.+.+.+.|..|++=. ..++....-|+......+ .++||.+. + ..+.++|+.+.+
T Consensus 15 ~~~v~viD~~t~~~~--~~i~~~~~~h~~~~~s~Dgr~~yv~~r-d------------g~vsviD~~~~~ 69 (369)
T PF02239_consen 15 SGSVAVIDGATNKVV--ARIPTGGAPHAGLKFSPDGRYLYVANR-D------------GTVSVIDLATGK 69 (369)
T ss_dssp GTEEEEEETTT-SEE--EEEE-STTEEEEEE-TT-SSEEEEEET-T------------SEEEEEETTSSS
T ss_pred CCEEEEEECCCCeEE--EEEcCCCCceeEEEecCCCCEEEEEcC-C------------CeEEEEECCccc
Confidence 357888888876522 222332222554444321 57898853 2 258899999987
No 122
>PRK03629 tolB translocation protein TolB; Provisional
Probab=50.88 E-value=2.5e+02 Score=27.53 Aligned_cols=104 Identities=12% Similarity=0.025 Sum_probs=53.6
Q ss_pred CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecccc
Q 014650 84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPM 163 (421)
Q Consensus 84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~ 163 (421)
..++.+|..+++-+.+..++.. .......--+.+|++.... + ....+|.+|..+.+.+++..-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~-----~~~~~~SPDG~~La~~~~~--~----------g~~~I~~~d~~tg~~~~lt~~ 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRH-----NGAPAFSPDGSKLAFALSK--T----------GSLNLYVMDLASGQIRQVTDG 285 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCC-----cCCeEECCCCCEEEEEEcC--C----------CCcEEEEEECCCCCEEEccCC
Confidence 4577778777776666555431 1111111223456554332 1 124699999998887777543
Q ss_pred CCCccceEEEEEccCCE-EEEEcCCccccccCCCCCccceEEEEECCCCceEECC
Q 014650 164 ISPRGSFACAAVRSLNQ-IIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD 217 (421)
Q Consensus 164 ~~~r~~~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 217 (421)
... .....+..+++ |+...... + ...++.+|..++.-+.+.
T Consensus 286 ~~~---~~~~~wSPDG~~I~f~s~~~--------g--~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 286 RSN---NTEPTWFPDSQNLAYTSDQA--------G--RPQVYKVNINGGAPQRIT 327 (429)
T ss_pred CCC---cCceEECCCCCEEEEEeCCC--------C--CceEEEEECCCCCeEEee
Confidence 322 12222222144 44433211 1 236788888887766553
No 123
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=50.32 E-value=1.7e+02 Score=25.36 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=26.8
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
..+.+||..+.+... .+........+..+..++.+++.++.+ ..+.+||..+.+
T Consensus 73 ~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~ 126 (289)
T cd00200 73 KTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSRD------------KTIKVWDVETGK 126 (289)
T ss_pred CeEEEEEcCcccceE--EEeccCCcEEEEEEcCCCCEEEEecCC------------CeEEEEECCCcE
Confidence 468888887753221 111111122223332114666666632 247788888554
No 124
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=50.19 E-value=1.6e+02 Score=25.15 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=32.6
Q ss_pred EEEecCCceEEEeCCCCceeEe-----cc-cCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEE
Q 014650 315 VFMLDKFDILRYDMGLNRWLKE-----TT-IPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQI 388 (421)
Q Consensus 315 ~~~~~~~~v~~yd~~~~~W~~~-----~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~ 388 (421)
+|.......++||...++...- .. .+. +..+..++....++++|++-| ...++
T Consensus 113 ~yfFkg~~y~ry~~~~~~v~~~yP~~i~~~w~g-~p~~idaa~~~~~~~~yfF~g--------------------~~y~~ 171 (194)
T cd00094 113 TYFFKGDKYWRYDEKTQKMDPGYPKLIETDFPG-VPDKVDAAFRWLDGYYYFFKG--------------------DQYWR 171 (194)
T ss_pred EEEEeCCEEEEEeCCCccccCCCCcchhhcCCC-cCCCcceeEEeCCCcEEEEEC--------------------CEEEE
Confidence 3333335677887665543211 10 011 001223333333489999998 46999
Q ss_pred EeCCcce
Q 014650 389 YHPRKKT 395 (421)
Q Consensus 389 yd~~~~~ 395 (421)
||..+++
T Consensus 172 ~d~~~~~ 178 (194)
T cd00094 172 FDPRSKE 178 (194)
T ss_pred EeCccce
Confidence 9988776
No 125
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=50.11 E-value=2.2e+02 Score=26.71 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=36.0
Q ss_pred ccccccCeEEEEccccCCCceEEEecCCceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEe
Q 014650 294 WERSRIGKIVVMEDENRGRPEVFMLDKFDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTV 363 (421)
Q Consensus 294 ~~~~~~g~i~v~GG~~~g~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG 363 (421)
.+|-..|++++..-. ..++..+|+++.+.+.+..+|.- ..++.-+ |.+.++|-
T Consensus 207 SPRWhdgrLwvldsg-----------tGev~~vD~~~G~~e~Va~vpG~-----~rGL~f~-G~llvVgm 259 (335)
T TIGR03032 207 SPRWYQGKLWLLNSG-----------RGELGYVDPQAGKFQPVAFLPGF-----TRGLAFA-GDFAFVGL 259 (335)
T ss_pred CCcEeCCeEEEEECC-----------CCEEEEEcCCCCcEEEEEECCCC-----Cccccee-CCEEEEEe
Confidence 356666788876532 25788999999999999888762 2344444 66666663
No 126
>PRK04922 tolB translocation protein TolB; Provisional
Probab=49.20 E-value=2.7e+02 Score=27.34 Aligned_cols=62 Identities=8% Similarity=0.092 Sum_probs=36.2
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE 218 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 218 (421)
..++++|..+.+-+.+...+..-......--+ .+|++....+ + ...++++|..+++-+.+..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG--~~l~~~~s~~-------g---~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDG--RRLALTLSRD-------G---NPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCC--CEEEEEEeCC-------C---CceEEEEECCCCCeEECcc
Confidence 56999999888877776554322111111112 4565543321 1 2468899999888766644
No 127
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=47.83 E-value=3e+02 Score=27.55 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=45.9
Q ss_pred eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCC
Q 014650 146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAG 225 (421)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 225 (421)
.||.++-.+..=..+-++- +...+.+.....|...++|-.+ ..+++||.++..= +..|......
T Consensus 198 ~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~------------g~v~iwD~~~~k~--~~~~~~~h~~ 261 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSD------------GTVQIWDVKEQKK--TRTLRGSHAS 261 (484)
T ss_pred eEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecC------------CeEEEEehhhccc--cccccCCcCc
Confidence 4555555555544444433 3334444443226666666543 3488999887652 3333332223
Q ss_pred eeEEEEccCCeEEEEeccCCCc
Q 014650 226 CVGFVAEESGEFWVMGGYGDSR 247 (421)
Q Consensus 226 ~~~~~~~~~~~iyv~GG~~~~~ 247 (421)
..+++..+ +.+...|+.++..
T Consensus 262 rvg~laW~-~~~lssGsr~~~I 282 (484)
T KOG0305|consen 262 RVGSLAWN-SSVLSSGSRDGKI 282 (484)
T ss_pred eeEEEecc-CceEEEecCCCcE
Confidence 34555555 7788888776653
No 128
>PRK02889 tolB translocation protein TolB; Provisional
Probab=47.79 E-value=2.8e+02 Score=27.16 Aligned_cols=105 Identities=10% Similarity=0.022 Sum_probs=53.2
Q ss_pred CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeC-CEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeecc
Q 014650 83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLG-PYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIA 161 (421)
Q Consensus 83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~ 161 (421)
...++.+|..+++=..+...+.. .......-+ ++|++.... + ...++|.+|..+...+++.
T Consensus 219 ~~~I~~~dl~~g~~~~l~~~~g~------~~~~~~SPDG~~la~~~~~--~----------g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVANFKGS------NSAPAWSPDGRTLAVALSR--D----------GNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred CcEEEEEECCCCCEEEeecCCCC------ccceEECCCCCEEEEEEcc--C----------CCceEEEEECCCCCcEECC
Confidence 34588899888776666544421 111122223 455544332 1 1357999998877766664
Q ss_pred ccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECC
Q 014650 162 PMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMD 217 (421)
Q Consensus 162 ~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~ 217 (421)
.-..........--+ .+|++..... + ...++.++..++..+.+.
T Consensus 281 ~~~~~~~~~~wSpDG--~~l~f~s~~~--------g--~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 281 QSSGIDTEPFFSPDG--RSIYFTSDRG--------G--APQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCCCCcCeEEcCCC--CEEEEEecCC--------C--CcEEEEEECCCCceEEEe
Confidence 422111122211112 3455443221 1 235777887777766553
No 129
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=46.93 E-value=2.7e+02 Score=26.76 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=54.6
Q ss_pred ceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe---CCEEEEEcccccCCCCCCCCCCCCCCeEE
Q 014650 72 DLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL---GPYIYLLGGSHFDARSFPLDRPLPSDSAF 148 (421)
Q Consensus 72 ~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~v~ 148 (421)
+++++.-.+ .+++...|..+.+-... ++.. ..-|..... +.++|+.+. + ..+.
T Consensus 6 ~l~~V~~~~--~~~v~viD~~t~~~~~~--i~~~-----~~~h~~~~~s~Dgr~~yv~~r---d------------g~vs 61 (369)
T PF02239_consen 6 NLFYVVERG--SGSVAVIDGATNKVVAR--IPTG-----GAPHAGLKFSPDGRYLYVANR---D------------GTVS 61 (369)
T ss_dssp GEEEEEEGG--GTEEEEEETTT-SEEEE--EE-S-----TTEEEEEE-TT-SSEEEEEET---T------------SEEE
T ss_pred cEEEEEecC--CCEEEEEECCCCeEEEE--EcCC-----CCceeEEEecCCCCEEEEEcC---C------------CeEE
Confidence 445444331 24577889887664322 2221 111333322 467999853 1 3689
Q ss_pred EEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 149 RFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 149 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
++|+.+.+ .+...+.+....++++-.+ |+..+++.+. .+.+.++|.++.+
T Consensus 62 viD~~~~~--~v~~i~~G~~~~~i~~s~D-G~~~~v~n~~-----------~~~v~v~D~~tle 111 (369)
T PF02239_consen 62 VIDLATGK--VVATIKVGGNPRGIAVSPD-GKYVYVANYE-----------PGTVSVIDAETLE 111 (369)
T ss_dssp EEETTSSS--EEEEEE-SSEEEEEEE--T-TTEEEEEEEE-----------TTEEEEEETTT--
T ss_pred EEECCccc--EEEEEecCCCcceEEEcCC-CCEEEEEecC-----------CCceeEecccccc
Confidence 99999987 5555566665555555433 5544444332 4468889988865
No 130
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=46.76 E-value=2.9e+02 Score=27.00 Aligned_cols=105 Identities=14% Similarity=0.222 Sum_probs=57.7
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCC-
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFR- 223 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r- 223 (421)
..+-+||..... .++.+|.--.--....+.+||+ |++-+.+ -.++.+||..... ....++.+-
T Consensus 369 ~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY-~Lat~ad-----------d~~V~lwDLRKl~--n~kt~~l~~~ 432 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGY-WLATAAD-----------DGSVKLWDLRKLK--NFKTIQLDEK 432 (506)
T ss_pred ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCce-EEEEEec-----------CCeEEEEEehhhc--ccceeecccc
Confidence 467889987766 5555555333334445554244 4443332 1237888888765 222222111
Q ss_pred CCeeEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccc
Q 014650 224 AGCVGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWD 292 (421)
Q Consensus 224 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~ 292 (421)
....+..++..|+..+++|.+-. ++.|+..+. .|+++..+..
T Consensus 433 ~~v~s~~fD~SGt~L~~~g~~l~---------------Vy~~~k~~k------------~W~~~~~~~~ 474 (506)
T KOG0289|consen 433 KEVNSLSFDQSGTYLGIAGSDLQ---------------VYICKKKTK------------SWTEIKELAD 474 (506)
T ss_pred ccceeEEEcCCCCeEEeecceeE---------------EEEEecccc------------cceeeehhhh
Confidence 12345566666888888865321 334444454 9999977654
No 131
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=46.43 E-value=1.9e+02 Score=29.78 Aligned_cols=100 Identities=14% Similarity=0.235 Sum_probs=56.0
Q ss_pred CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc------ee--eccccC-CCccceEEEEEccCCEEEEEcCCccc
Q 014650 120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS------WE--RIAPMI-SPRGSFACAAVRSLNQIIVAGGGSRH 190 (421)
Q Consensus 120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~------W~--~~~~~~-~~r~~~~~~~~~~~~~iyv~GG~~~~ 190 (421)
++.+++-||.+ ..++.||..+.. .. ...+++ .++..--.-+++.++.++|.||..
T Consensus 129 ~~~lvaSgGLD--------------~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-- 192 (735)
T KOG0308|consen 129 NNELVASGGLD--------------RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-- 192 (735)
T ss_pred CceeEEecCCC--------------ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc--
Confidence 78899999974 346666655432 12 223444 344332223333236788888863
Q ss_pred cccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCc
Q 014650 191 SLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSR 247 (421)
Q Consensus 191 ~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~ 247 (421)
+.+..||+.+.. ++-.+..-+.+...+++.++|.=.+.++.++..
T Consensus 193 ----------k~lr~wDprt~~--kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtI 237 (735)
T KOG0308|consen 193 ----------KDLRLWDPRTCK--KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTI 237 (735)
T ss_pred ----------cceEEecccccc--ceeeeeccccceEEEEEcCCCCeEeecCCCceE
Confidence 458889999875 222223333344455565557666666666543
No 132
>PTZ00420 coronin; Provisional
Probab=44.55 E-value=3.7e+02 Score=27.65 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=19.5
Q ss_pred eEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650 202 SVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGD 245 (421)
Q Consensus 202 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~ 245 (421)
.+.+||..+.+=.. .+..+. ...++.+..++.+++.++.++
T Consensus 149 tIrIWDl~tg~~~~--~i~~~~-~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 149 FVNIWDIENEKRAF--QINMPK-KLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred eEEEEECCCCcEEE--EEecCC-cEEEEEECCCCCEEEEEecCC
Confidence 47788888765111 111111 122333433367777666443
No 133
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.52 E-value=3.2e+02 Score=26.94 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=31.6
Q ss_pred CEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCCc
Q 014650 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDSR 247 (421)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~ 247 (421)
+.=.+.||.+++ +-+|| +..|+.+-.+..|-.--...+..+ +.-.++|..++..
T Consensus 250 ~~rLlS~sLD~~------------VKVfd--~t~~Kvv~s~~~~~pvLsiavs~d-d~t~viGmsnGlv 303 (487)
T KOG0310|consen 250 STRLLSGSLDRH------------VKVFD--TTNYKVVHSWKYPGPVLSIAVSPD-DQTVVIGMSNGLV 303 (487)
T ss_pred CceEeecccccc------------eEEEE--ccceEEEEeeecccceeeEEecCC-CceEEEeccccee
Confidence 455567777533 78898 555666554433322223344444 7788888877643
No 134
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=43.96 E-value=50 Score=26.53 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=31.6
Q ss_pred CceEEEeCCCCc---eeEecccCCCCCCCCceEEE---EeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcc
Q 014650 321 FDILRYDMGLNR---WLKETTIPEIRPCKKPLGFI---VLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKK 394 (421)
Q Consensus 321 ~~v~~yd~~~~~---W~~~~~~~~~~~~r~~~~~~---~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 394 (421)
+.+..||.+.|. ++++ ++.. ....+. .....|.++||.. .|.-||-+-+
T Consensus 73 t~llaYDV~~N~d~Fyke~---~DGv---n~i~~g~~~~~~~~l~ivGGnc-------------------si~Gfd~~G~ 127 (136)
T PF14781_consen 73 TSLLAYDVENNSDLFYKEV---PDGV---NAIVIGKLGDIPSPLVIVGGNC-------------------SIQGFDYEGN 127 (136)
T ss_pred ceEEEEEcccCchhhhhhC---ccce---eEEEEEecCCCCCcEEEECceE-------------------EEEEeCCCCc
Confidence 789999998875 3333 3321 111111 1246799999965 6778876654
Q ss_pred e--eeE
Q 014650 395 T--WRY 398 (421)
Q Consensus 395 ~--W~~ 398 (421)
+ |+.
T Consensus 128 e~fWtV 133 (136)
T PF14781_consen 128 EIFWTV 133 (136)
T ss_pred EEEEEe
Confidence 3 654
No 135
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=43.94 E-value=17 Score=35.12 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=34.6
Q ss_pred CCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCc
Q 014650 22 PGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRT 59 (421)
Q Consensus 22 ~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~ 59 (421)
-.||.+++.++|+.|...++.+.+.+|+-|+.+..+..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 46899999999999999999999999999999887654
No 136
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=41.89 E-value=3.1e+02 Score=26.01 Aligned_cols=107 Identities=21% Similarity=0.169 Sum_probs=58.1
Q ss_pred CccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650 84 SSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162 (421)
Q Consensus 84 ~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 162 (421)
..++.+|..+++-.-. ++.. ...+.+.+- ++.+|+..-+-.... ....+.-|.+||+.|-+=..=-.
T Consensus 17 ~rv~viD~d~~k~lGm--i~~g-----~~~~~~~spdgk~~y~a~T~~sR~~-----rG~RtDvv~~~D~~TL~~~~EI~ 84 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGM--IDTG-----FLGNVALSPDGKTIYVAETFYSRGT-----RGERTDVVEIWDTQTLSPTGEIE 84 (342)
T ss_dssp EEEEEEETTTTEEEEE--EEEE-----SSEEEEE-TTSSEEEEEEEEEEETT-----EEEEEEEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCCcEEEE--eecc-----cCCceeECCCCCEEEEEEEEEeccc-----cccceeEEEEEecCcCcccceEe
Confidence 4688899888875443 3321 222322222 577888775432211 11346678999999986432222
Q ss_pred cCC-Cccc-------eEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE
Q 014650 163 MIS-PRGS-------FACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS 215 (421)
Q Consensus 163 ~~~-~r~~-------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~ 215 (421)
+|. +|.. .++..-+ ..+||. +.....+|-+-|.+.++-..
T Consensus 85 iP~k~R~~~~~~~~~~~ls~dg--k~~~V~-----------N~TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 85 IPPKPRAQVVPYKNMFALSADG--KFLYVQ-----------NFTPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp ETTS-B--BS--GGGEEE-TTS--SEEEEE-----------EESSSEEEEEEETTTTEEEE
T ss_pred cCCcchheecccccceEEccCC--cEEEEE-----------ccCCCCeEEEEECCCCceee
Confidence 232 2332 2222222 556665 23457789999999988644
No 137
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=41.32 E-value=3.7e+02 Score=26.67 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=46.0
Q ss_pred CeEEEEeCccC--ceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCC
Q 014650 145 DSAFRFNFLTF--SWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRF 222 (421)
Q Consensus 145 ~~v~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~ 222 (421)
..+.+||...+ .-+.+..+.... ++++.... +.+++.|+.+ ..+.++|.++.+-...-....
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~-g~~i~Sgs~D------------~tvriWd~~~~~~~~~l~~hs- 288 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPD-GNLLVSGSDD------------GTVRIWDVRTGECVRKLKGHS- 288 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCC-CCEEEEecCC------------CcEEEEeccCCeEEEeeeccC-
Confidence 46788888333 223344444333 34443332 7788888865 348888998855433222222
Q ss_pred CCCeeEEEEccCCeEEEEeccCC
Q 014650 223 RAGCVGFVAEESGEFWVMGGYGD 245 (421)
Q Consensus 223 r~~~~~~~~~~~~~iyv~GG~~~ 245 (421)
....++.+..++.+++.+.+++
T Consensus 289 -~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 289 -DGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred -CceEEEEECCCCCEEEEcCCCc
Confidence 2233444544477777776544
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=40.42 E-value=5e+02 Score=27.98 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=21.5
Q ss_pred CCeEEEEeCccCcee-eccccCCCccceEEEEEccCCEEEEEcCCc
Q 014650 144 SDSAFRFNFLTFSWE-RIAPMISPRGSFACAAVRSLNQIIVAGGGS 188 (421)
Q Consensus 144 ~~~v~~yd~~t~~W~-~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~ 188 (421)
-++|.+|..-..+-. .+..+..|- .+.++..+ |+..++||-+
T Consensus 75 ~~tv~~y~fps~~~~~iL~Rftlp~-r~~~v~g~--g~~iaagsdD 117 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTILARFTLPI-RDLAVSGS--GKMIAAGSDD 117 (933)
T ss_pred cceEEEeeCCCCCccceeeeeeccc-eEEEEecC--CcEEEeecCc
Confidence 356777776554433 333333331 22333333 7777777754
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=39.14 E-value=4.1e+02 Score=26.56 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=43.2
Q ss_pred CceEEEeCCCC----ceeEecccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCccee
Q 014650 321 FDILRYDMGLN----RWLKETTIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTW 396 (421)
Q Consensus 321 ~~v~~yd~~~~----~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 396 (421)
..|..||.... .|.+.-.-|. .+.+++..+..|+|.=|++ ..|..||+.+..=
T Consensus 187 G~VtlwDv~g~sp~~~~~~~HsAP~-----~gicfspsne~l~vsVG~D------------------kki~~yD~~s~~s 243 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEAHSAPC-----RGICFSPSNEALLVSVGYD------------------KKINIYDIRSQAS 243 (673)
T ss_pred CeEEEEeccCCCcccchhhhccCCc-----CcceecCCccceEEEeccc------------------ceEEEeecccccc
Confidence 34666766543 3555432222 4456667788888888887 4688888765533
Q ss_pred e--EecccCCCCCCCCccceeEEE
Q 014650 397 R--YIFTKPPFPQPLDFGTAIMCT 418 (421)
Q Consensus 397 ~--~i~~~p~~~~~~~~~~~~~~~ 418 (421)
+ .....|.....+.-+++..|.
T Consensus 244 ~~~l~y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 244 TDRLTYSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred cceeeecCCcceeeecCCceEEEe
Confidence 2 223445555555555555543
No 140
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=38.54 E-value=3e+02 Score=24.86 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=44.5
Q ss_pred eEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCC
Q 014650 146 SAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAG 225 (421)
Q Consensus 146 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~ 225 (421)
.|--+|+.+-.--+--.||.-. ..+.+..+..+||+||.+ -.++.||-.|+.= +........+
T Consensus 206 sV~Fwdaksf~~lKs~k~P~nV---~SASL~P~k~~fVaGged------------~~~~kfDy~TgeE--i~~~nkgh~g 268 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPCNV---ESASLHPKKEFFVAGGED------------FKVYKFDYNTGEE--IGSYNKGHFG 268 (334)
T ss_pred eeEEeccccccceeeccCcccc---ccccccCCCceEEecCcc------------eEEEEEeccCCce--eeecccCCCC
Confidence 3555566554332223344322 333443336799999975 2377888888762 2222111111
Q ss_pred -eeEEEEccCCeEEEEeccCCCc
Q 014650 226 -CVGFVAEESGEFWVMGGYGDSR 247 (421)
Q Consensus 226 -~~~~~~~~~~~iyv~GG~~~~~ 247 (421)
..++-+.-+|.+|..|..++..
T Consensus 269 pVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 269 PVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred ceEEEEECCCCceeeccCCCceE
Confidence 1123332238999999877653
No 141
>PRK13684 Ycf48-like protein; Provisional
Probab=38.53 E-value=3.5e+02 Score=25.56 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=29.7
Q ss_pred EEEEeCccCceeecccc-CCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650 147 AFRFNFLTFSWERIAPM-ISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE 218 (421)
Q Consensus 147 v~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 218 (421)
+++=+-.-.+|+++... ..+...+.+..++. +.+|++|... .+.+-+-.-.+|+.+..
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~g~~G-------------~i~~S~DgG~tW~~~~~ 169 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLPGSPYLITALGP-GTAEMATNVG-------------AIYRTTDGGKNWEALVE 169 (334)
T ss_pred EEEECCCCCCCeEccCCcCCCCCceEEEEECC-Ccceeeeccc-------------eEEEECCCCCCceeCcC
Confidence 55544455689988532 12222334444443 5566665421 23333333468998754
No 142
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=37.70 E-value=3.1e+02 Score=24.76 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=60.2
Q ss_pred CcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccc------------eEEEEEccC
Q 014650 111 LCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGS------------FACAAVRSL 178 (421)
Q Consensus 111 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~------------~~~~~~~~~ 178 (421)
-.+.+.++.+|.+|---. .+..+.+||..+++-..-..+|.+... .-.++-.
T Consensus 69 ~~GtG~vVYngslYY~~~--------------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE-- 132 (250)
T PF02191_consen 69 WQGTGHVVYNGSLYYNKY--------------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDE-- 132 (250)
T ss_pred eccCCeEEECCcEEEEec--------------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcC--
Confidence 345556677877775543 357899999999875522223322211 2344444
Q ss_pred CEEEEEcCCccccccCCCCCccceEEEEECCC----CceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650 179 NQIIVAGGGSRHSLFGAAGSRISSVERYDVAK----NEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS 246 (421)
Q Consensus 179 ~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t----~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~ 246 (421)
+-|+|+-..... ...-.+-..|+.+ .+|.. ..+.+..+ .+++++ |.||++...+..
T Consensus 133 ~GLWvIYat~~~-------~g~ivvskld~~tL~v~~tw~T--~~~k~~~~-naFmvC--GvLY~~~s~~~~ 192 (250)
T PF02191_consen 133 NGLWVIYATEDN-------NGNIVVSKLDPETLSVEQTWNT--SYPKRSAG-NAFMVC--GVLYATDSYDTR 192 (250)
T ss_pred CCEEEEEecCCC-------CCcEEEEeeCcccCceEEEEEe--ccCchhhc-ceeeEe--eEEEEEEECCCC
Confidence 567777553211 1112344566665 35864 33443333 355555 899999876544
No 143
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=37.42 E-value=3.4e+02 Score=25.20 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=40.7
Q ss_pred CeEEEEeCccC-----ceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc-eEECCC
Q 014650 145 DSAFRFNFLTF-----SWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE-WVSMDE 218 (421)
Q Consensus 145 ~~v~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~-W~~~~~ 218 (421)
..+..|+.... +++.+......-.-.+++.++ +++.+..|. .+.+|+...++ +...+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~~lv~~~g~--------------~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--GRLVVAVGN--------------KLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--TEEEEEETT--------------EEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--CEEEEeecC--------------EEEEEEccCcccchhhhe
Confidence 67899998885 666665554444456777788 887666663 37788888777 666555
Q ss_pred CCCC
Q 014650 219 MPRF 222 (421)
Q Consensus 219 ~~~~ 222 (421)
+..+
T Consensus 126 ~~~~ 129 (321)
T PF03178_consen 126 YDSP 129 (321)
T ss_dssp E-BS
T ss_pred ecce
Confidence 4433
No 144
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=37.15 E-value=3.5e+02 Score=25.17 Aligned_cols=187 Identities=11% Similarity=0.089 Sum_probs=89.6
Q ss_pred ccccCCCChHHHHHHHhcCCCcchhHHHHhhhHhHHhhhcCCccccc-----ccccccCC-----------ceEEEeCCC
Q 014650 17 TVTLIPGLPNDVASLILAFVPYSHQSRLKQTCRSWFLFFSSRTLVFD-----RHKFNSQS-----------DLLCIFPQD 80 (421)
Q Consensus 17 ~~~~~~~Lp~dl~~~~l~~lp~~~~~~~~~v~k~W~~l~~~~~~~~~-----~~~~~~~~-----------~~~~~~g~~ 80 (421)
.+-.++.=|+|-+ .+|++-| .......+.+|..-.+.-++... ++...... ..+|+.+.+
T Consensus 18 kd~ev~~pP~DsI-S~l~FSP---~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D 93 (347)
T KOG0647|consen 18 KDYEVPNPPEDSI-SALAFSP---QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD 93 (347)
T ss_pred cceecCCCcccch-heeEecc---ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC
Confidence 3344566666655 3566666 22233335567654433332221 11122222 333333333
Q ss_pred CCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeec
Q 014650 81 PSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERI 160 (421)
Q Consensus 81 ~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~ 160 (421)
.+...+|..+++=.++..-..| .|..|-+-..+-.+++.|.++ +++-.+|+.... .+
T Consensus 94 ---k~~k~wDL~S~Q~~~v~~Hd~p----vkt~~wv~~~~~~cl~TGSWD--------------KTlKfWD~R~~~--pv 150 (347)
T KOG0647|consen 94 ---KQAKLWDLASGQVSQVAAHDAP----VKTCHWVPGMNYQCLVTGSWD--------------KTLKFWDTRSSN--PV 150 (347)
T ss_pred ---CceEEEEccCCCeeeeeecccc----eeEEEEecCCCcceeEecccc--------------cceeecccCCCC--ee
Confidence 3467899999987777544333 133333323333466777664 345556665322 22
Q ss_pred cccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCCCCCCCeeEEEEccCCeEE
Q 014650 161 APMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMPRFRAGCVGFVAEESGEFW 238 (421)
Q Consensus 161 ~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~~~iy 238 (421)
..+..|-..+++-+.. . +-|++-. .+.+-+|+.+... ...+.+.. ...+.++++..++..|
T Consensus 151 ~t~~LPeRvYa~Dv~~--p-m~vVata------------~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~ 213 (347)
T KOG0647|consen 151 ATLQLPERVYAADVLY--P-MAVVATA------------ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGF 213 (347)
T ss_pred eeeeccceeeehhccC--c-eeEEEec------------CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCce
Confidence 3333332234444443 3 3333332 1247778886653 33332211 1223344444447788
Q ss_pred EEeccCCCc
Q 014650 239 VMGGYGDSR 247 (421)
Q Consensus 239 v~GG~~~~~ 247 (421)
.+|+..+..
T Consensus 214 alGsiEGrv 222 (347)
T KOG0647|consen 214 ALGSIEGRV 222 (347)
T ss_pred EeeeecceE
Confidence 999987764
No 145
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=37.00 E-value=4.5e+02 Score=26.44 Aligned_cols=85 Identities=16% Similarity=0.289 Sum_probs=49.0
Q ss_pred ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCCCeeEEEEccCCeEEEEeccCCC
Q 014650 167 RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRAGCVGFVAEESGEFWVMGGYGDS 246 (421)
Q Consensus 167 r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~ 246 (421)
++..+++++..++...++||.++ .+.+|...-..-.+...+...|.....+.+-.+++.++.|-..
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dg------------kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~-- 508 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDG------------KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS-- 508 (603)
T ss_pred ccccceEEEcCCCCEEEEecccc------------eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC--
Confidence 44444444433367788888652 2788888776644444444445445556665545555555432
Q ss_pred ccccccccceeeechheehhhhccCCcCCCCCCCCCCce
Q 014650 247 RTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWR 285 (421)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~ 285 (421)
+.+..||.+++ -..++.|.
T Consensus 509 -------------rkvv~yd~~s~-------~~~~~~w~ 527 (603)
T KOG0318|consen 509 -------------RKVVLYDVASR-------EVKTNRWA 527 (603)
T ss_pred -------------CcEEEEEcccC-------ceecceee
Confidence 23557777775 22666776
No 146
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=36.21 E-value=2.8e+02 Score=28.23 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=43.3
Q ss_pred CCeEEEEeCccCc--eeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCC
Q 014650 144 SDSAFRFNFLTFS--WERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEM 219 (421)
Q Consensus 144 ~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~ 219 (421)
...+..+|+.|.+ |+.-.+ .+.....++. . +.+|++|..+ ..+.+||.+|++ |+. .+
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~--~p~~~~~l~t-~--g~lvf~g~~~------------G~l~a~D~~TGe~lw~~--~~ 500 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKED--FPLWGGVLAT-A--GDLVFYGTLE------------GYFKAFDAKTGEELWKF--KT 500 (527)
T ss_pred ceeEEEEeCCCCceeeEecCC--CCCCCcceEE-C--CcEEEEECCC------------CeEEEEECCCCCEeEEE--eC
Confidence 4568889998875 875433 3322223333 4 4566665533 248999999987 865 23
Q ss_pred CCCCCCeeEEEEccCCeEEEE
Q 014650 220 PRFRAGCVGFVAEESGEFWVM 240 (421)
Q Consensus 220 ~~~r~~~~~~~~~~~~~iyv~ 240 (421)
+..-.........+ +++||+
T Consensus 501 g~~~~a~P~ty~~~-G~qYv~ 520 (527)
T TIGR03075 501 GSGIVGPPVTYEQD-GKQYVA 520 (527)
T ss_pred CCCceecCEEEEeC-CEEEEE
Confidence 32222222221233 899886
No 147
>PRK04043 tolB translocation protein TolB; Provisional
Probab=34.18 E-value=4.6e+02 Score=25.71 Aligned_cols=112 Identities=10% Similarity=0.071 Sum_probs=63.5
Q ss_pred CCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccc
Q 014650 83 ISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAP 162 (421)
Q Consensus 83 ~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~ 162 (421)
..+++.+|..+++++++...+.. -....-..-+.+||...... ...+++++|..+.+.+++..
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~~~~~-----d~~p~~SPDG~~I~F~Sdr~------------g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITNYPGI-----DVNGNFVEDDKRIVFVSDRL------------GYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CcEEEEEECCCCcEEEcccCCCc-----cCccEECCCCCEEEEEECCC------------CCceEEEEECCCCCeEeCcc
Confidence 45789999999999988665421 01111112245677665421 23579999999988877654
Q ss_pred cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCC
Q 014650 163 MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM 219 (421)
Q Consensus 163 ~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~ 219 (421)
- +........-+ ..|......... +.......++++|.+++.++.+...
T Consensus 319 ~--g~~~~~~SPDG--~~Ia~~~~~~~~----~~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 319 H--GKNNSSVSTYK--NYIVYSSRETNN----EFGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred C--CCcCceECCCC--CEEEEEEcCCCc----ccCCCCcEEEEEECCCCCeEECCCC
Confidence 2 22222222222 344444332110 0011235789999999999888763
No 148
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.13 E-value=1.9e+02 Score=25.40 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=54.3
Q ss_pred eEEEEccCCeEEEEeccCCCccccccccceeeechheehhhhccCCcCCCCCCCCCCceEecCccccccccccCeEEEEc
Q 014650 227 VGFVAEESGEFWVMGGYGDSRTISGVLPVDEYYRDAVVMQLKKKKKTDDHDDGDRGTWREVGDMWDEWERSRIGKIVVME 306 (421)
Q Consensus 227 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~g~i~v~G 306 (421)
.+..+.+ ++|+..-|..+... +.++|+.++ .-.|++- ++. .+....-+..+|
T Consensus 49 QGL~~~~-g~i~esTG~yg~S~-------------ir~~~L~~g----------q~~~s~~--l~~--~~~FgEGit~~g 100 (262)
T COG3823 49 QGLEYLD-GHILESTGLYGFSK-------------IRVSDLTTG----------QEIFSEK--LAP--DTVFGEGITKLG 100 (262)
T ss_pred cceeeeC-CEEEEeccccccce-------------eEEEeccCc----------eEEEEee--cCC--ccccccceeecc
Confidence 3556666 78888888655431 335555543 0134332 221 122222344445
Q ss_pred cccCCCceEEEecCC--ceEEEeCCCCceeEecccCCCCCCCCceEEEEeCCeEEEEEee
Q 014650 307 DENRGRPEVFMLDKF--DILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLDGELYVMTVL 364 (421)
Q Consensus 307 G~~~g~~~~~~~~~~--~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~~~lyv~GG~ 364 (421)
.. +|.+.-. .-++||+.+ .+++...+. ...+.+++..+..|.+-.|.
T Consensus 101 d~------~y~LTw~egvaf~~d~~t--~~~lg~~~y---~GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 101 DY------FYQLTWKEGVAFKYDADT--LEELGRFSY---EGEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred ce------EEEEEeccceeEEEChHH--hhhhccccc---CCcceeeecCCcceEeeCCc
Confidence 44 6655433 345666554 677766654 34678888888887776664
No 149
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=32.98 E-value=5.1e+02 Score=25.82 Aligned_cols=60 Identities=17% Similarity=0.003 Sum_probs=35.7
Q ss_pred CCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 143 PSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 143 ~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
...+++.++.+..+-+++.-+ +|..--++-...++.|.|.--.. .....-.+.|-...+-
T Consensus 105 ~taDly~v~~e~Ge~kRiTyf--Gr~fT~VaG~~~dg~iiV~TD~~--------tPF~q~~~lYkv~~dg 164 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYF--GRRFTRVAGWIPDGEIIVSTDFH--------TPFSQWTELYKVNVDG 164 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEe--ccccceeeccCCCCCEEEEeccC--------CCcccceeeeEEccCC
Confidence 356889999999888888766 33333333332237888776543 2334445556555543
No 150
>PTZ00421 coronin; Provisional
Probab=32.82 E-value=5.3e+02 Score=25.99 Aligned_cols=54 Identities=2% Similarity=-0.111 Sum_probs=28.8
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
..+.+||..+.+-. ..+..-......+.+..++.+++.|+.+ ..+.+||+.+++
T Consensus 148 gtVrIWDl~tg~~~--~~l~~h~~~V~sla~spdG~lLatgs~D------------g~IrIwD~rsg~ 201 (493)
T PTZ00421 148 MVVNVWDVERGKAV--EVIKCHSDQITSLEWNLDGSLLCTTSKD------------KKLNIIDPRDGT 201 (493)
T ss_pred CEEEEEECCCCeEE--EEEcCCCCceEEEEEECCCCEEEEecCC------------CEEEEEECCCCc
Confidence 45888998776422 1111111111222222226777777764 247789998765
No 151
>PRK05137 tolB translocation protein TolB; Provisional
Probab=32.64 E-value=4.8e+02 Score=25.51 Aligned_cols=62 Identities=5% Similarity=0.018 Sum_probs=37.9
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE 218 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 218 (421)
..++++|+.+.+.+.+...+..-......--+ .+|++....+ ....++.+|.+++.-+.+..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG--~~la~~~~~~----------g~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDG--RKVVMSLSQG----------GNTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCC--CEEEEEEecC----------CCceEEEEECCCCceEEccC
Confidence 57999999998888777654432222222222 4555443321 13468888999888777654
No 152
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=31.47 E-value=1e+02 Score=31.15 Aligned_cols=53 Identities=17% Similarity=0.382 Sum_probs=34.9
Q ss_pred CceEEEeCCCCceeEecccCCCCCCCCceEEEEeC--CeEEEEEeecCCCccccccccccccceeeEEEEEeCCccee
Q 014650 321 FDILRYDMGLNRWLKETTIPEIRPCKKPLGFIVLD--GELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTW 396 (421)
Q Consensus 321 ~~v~~yd~~~~~W~~~~~~~~~~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 396 (421)
.+|+++|.+.+.|-.- +... -...-+|.++ +.|+++||.+| .|+.||+.+++=
T Consensus 155 ~evYRlNLEqGrfL~P--~~~~---~~~lN~v~in~~hgLla~Gt~~g------------------~VEfwDpR~ksr 209 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNP--FETD---SGELNVVSINEEHGLLACGTEDG------------------VVEFWDPRDKSR 209 (703)
T ss_pred cceEEEEccccccccc--cccc---cccceeeeecCccceEEecccCc------------------eEEEecchhhhh
Confidence 6899999999988652 2111 1223344444 57888898663 689999887754
No 153
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=30.29 E-value=3.1e+02 Score=22.57 Aligned_cols=68 Identities=18% Similarity=0.291 Sum_probs=39.8
Q ss_pred ceEEEeCCCCceeEecccCCCCC-CCCceEE-EEeCCeEEEEEeecCCCccccccccccccceeeEEEEEe---CCccee
Q 014650 322 DILRYDMGLNRWLKETTIPEIRP-CKKPLGF-IVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYH---PRKKTW 396 (421)
Q Consensus 322 ~v~~yd~~~~~W~~~~~~~~~~~-~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd---~~~~~W 396 (421)
.|..||..+++..+.-++|.... ......+ +..+++|-++--..... ..+||+-+ -...+|
T Consensus 22 ~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~--------------~~~IWvm~~~~~~~~SW 87 (164)
T PF07734_consen 22 FILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETS--------------KIEIWVMKKYGYGKESW 87 (164)
T ss_pred EEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCc--------------cEEEEEEeeeccCcceE
Confidence 58899999999944445554322 1122333 23367888775322111 14677765 237899
Q ss_pred eEecccC
Q 014650 397 RYIFTKP 403 (421)
Q Consensus 397 ~~i~~~p 403 (421)
+++-..+
T Consensus 88 tK~~~i~ 94 (164)
T PF07734_consen 88 TKLFTID 94 (164)
T ss_pred EEEEEEe
Confidence 9986554
No 154
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=29.60 E-value=4.4e+02 Score=24.10 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCeEEEEeCccCceeeccc-----cCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 144 SDSAFRFNFLTFSWERIAP-----MISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 144 ~~~v~~yd~~t~~W~~~~~-----~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
...|.+||.....=..... +|.+-.....+..+..++..+.|+.+ .++-.||..++.
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~------------G~is~~da~~g~ 180 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED------------GSISIYDARTGK 180 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC------------CcEEEEEcccCc
Confidence 4567788876433222111 23344555666665435666667654 237788888863
No 155
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=29.33 E-value=5.9e+02 Score=25.48 Aligned_cols=77 Identities=12% Similarity=0.023 Sum_probs=37.3
Q ss_pred ceEEEeCCCCCCCccEEEeCCC--CcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEE
Q 014650 72 DLLCIFPQDPSISSPFLFDAAN--RACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFR 149 (421)
Q Consensus 72 ~~~~~~g~~~~~~~~~~~d~~~--~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~ 149 (421)
..+|+...+ ..++++|..+ ..|+.-..-+... .+ ....+.++.++.+|+ |....+.. .......++.
T Consensus 111 ~~V~v~~~~---g~v~AlD~~TG~~~W~~~~~~~~~~-~~-~i~ssP~v~~~~v~v-g~~~~~~~-----~~~~~g~v~a 179 (488)
T cd00216 111 RKVFFGTFD---GRLVALDAETGKQVWKFGNNDQVPP-GY-TMTGAPTIVKKLVII-GSSGAEFF-----ACGVRGALRA 179 (488)
T ss_pred CeEEEecCC---CeEEEEECCCCCEeeeecCCCCcCc-ce-EecCCCEEECCEEEE-eccccccc-----cCCCCcEEEE
Confidence 566665432 3588999875 4576542221100 00 012233455666665 43211100 0012357899
Q ss_pred EeCccCc--eee
Q 014650 150 FNFLTFS--WER 159 (421)
Q Consensus 150 yd~~t~~--W~~ 159 (421)
+|..|.+ |+.
T Consensus 180 lD~~TG~~~W~~ 191 (488)
T cd00216 180 YDVETGKLLWRF 191 (488)
T ss_pred EECCCCceeeEe
Confidence 9987755 864
No 156
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=29.14 E-value=7.5e+02 Score=26.60 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=24.7
Q ss_pred EEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEECCCCC
Q 014650 171 ACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVSMDEMP 220 (421)
Q Consensus 171 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~ 220 (421)
+-++++ +.||+.... +.+..+|.+|++ |+.-+..+
T Consensus 189 TPlvvg--g~lYv~t~~-------------~~V~ALDa~TGk~lW~~d~~~~ 225 (764)
T TIGR03074 189 TPLKVG--DTLYLCTPH-------------NKVIALDAATGKEKWKFDPKLK 225 (764)
T ss_pred CCEEEC--CEEEEECCC-------------CeEEEEECCCCcEEEEEcCCCC
Confidence 345667 999998652 358889999875 88755543
No 157
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=28.55 E-value=1.1e+02 Score=18.40 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=15.8
Q ss_pred CeeEEEEccCCeEEEEeccCC
Q 014650 225 GCVGFVAEESGEFWVMGGYGD 245 (421)
Q Consensus 225 ~~~~~~~~~~~~iyv~GG~~~ 245 (421)
...+++++.++.|||.|-.++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 356777877789999986654
No 158
>PRK03629 tolB translocation protein TolB; Provisional
Probab=27.82 E-value=5.9e+02 Score=24.95 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=36.5
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCC
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEM 219 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~ 219 (421)
..++++|..+.+-+.+...+..-......--+ .+|++..... ....++.+|.++++.+++..-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG--~~La~~~~~~----------g~~~I~~~d~~tg~~~~lt~~ 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDG--SKLAFALSKT----------GSLNLYVMDLASGQIRQVTDG 285 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCC--CEEEEEEcCC----------CCcEEEEEECCCCCEEEccCC
Confidence 46899998887766666554322222221122 4566553321 123588999999887776543
No 159
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.62 E-value=5.1e+02 Score=24.16 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=25.8
Q ss_pred CCceEEEeCCCCce--eEecccCCCC-----CCCCceEEEEeCCeEEEE
Q 014650 320 KFDILRYDMGLNRW--LKETTIPEIR-----PCKKPLGFIVLDGELYVM 361 (421)
Q Consensus 320 ~~~v~~yd~~~~~W--~~~~~~~~~~-----~~r~~~~~~~~~~~lyv~ 361 (421)
...|.+||..+++| +... .+... ..+....++...+++|.|
T Consensus 172 ~~~i~~~Dli~~~~~~e~f~-~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 172 VSGIHCLDLISGKWVIESFD-VSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred CceEEEEEccCCeEEEEecc-cccCCCCCceEeeccccEEEEeeeEEEE
Confidence 46899999999999 4332 11111 123344567788888876
No 160
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=27.48 E-value=5.4e+02 Score=24.45 Aligned_cols=109 Identities=9% Similarity=0.045 Sum_probs=60.1
Q ss_pred ccCCceEEEeCCCCCCCccEEEeCCCCc--EEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCC
Q 014650 68 NSQSDLLCIFPQDPSISSPFLFDAANRA--CRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSD 145 (421)
Q Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~d~~~~~--W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 145 (421)
......+|+...+. .++++|+.+.+ |.....- . .....-.+...+++||+-... .
T Consensus 65 ~~~dg~v~~~~~~G---~i~A~d~~~g~~~W~~~~~~-~----~~~~~~~~~~~~G~i~~g~~~---------------g 121 (370)
T COG1520 65 ADGDGTVYVGTRDG---NIFALNPDTGLVKWSYPLLG-A----VAQLSGPILGSDGKIYVGSWD---------------G 121 (370)
T ss_pred EeeCCeEEEecCCC---cEEEEeCCCCcEEecccCcC-c----ceeccCceEEeCCeEEEeccc---------------c
Confidence 34456666653322 58999999877 8654221 0 001222233337887755442 2
Q ss_pred eEEEEeCc--cCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc--eEE
Q 014650 146 SAFRFNFL--TFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE--WVS 215 (421)
Q Consensus 146 ~v~~yd~~--t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~--W~~ 215 (421)
.+++||.. +..|+.-.... ++..-..++.+ +.+|+... ...+..+|..+.+ |+.
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~--~~v~~~s~-------------~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGGS-PYYASPPVVGD--GTVYVGTD-------------DGHLYALNADTGTLKWTY 179 (370)
T ss_pred eEEEEECCCCcEEEEEecCCC-eEEecCcEEcC--cEEEEecC-------------CCeEEEEEccCCcEEEEE
Confidence 68999984 45587654432 33322333334 67776531 2347888888764 875
No 161
>PLN00181 protein SPA1-RELATED; Provisional
Probab=27.25 E-value=8e+02 Score=26.34 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=21.5
Q ss_pred eEEEEECCCCceEECCCCCCCCCCeeEEEEc-cCCeEEEEeccCCC
Q 014650 202 SVERYDVAKNEWVSMDEMPRFRAGCVGFVAE-ESGEFWVMGGYGDS 246 (421)
Q Consensus 202 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~~~iyv~GG~~~~ 246 (421)
.+.+||..+++-.. .+........++.+. .++.+++.||.++.
T Consensus 556 ~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 556 VVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDGS 599 (793)
T ss_pred eEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence 47788888765322 111111122333342 12667777876653
No 162
>PLN00181 protein SPA1-RELATED; Provisional
Probab=27.04 E-value=8.1e+02 Score=26.31 Aligned_cols=54 Identities=7% Similarity=0.074 Sum_probs=27.1
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEc-cCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVR-SLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
..+.+||..+.+-. ..+..-...-..+.+. .++.+++.||.+ ..+.+||..+..
T Consensus 555 g~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D------------g~v~iWd~~~~~ 609 (793)
T PLN00181 555 GVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDD------------GSVKLWSINQGV 609 (793)
T ss_pred CeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCC------------CEEEEEECCCCc
Confidence 35778887765422 2221111111222221 115677777764 237788887654
No 163
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=26.43 E-value=5.9e+02 Score=24.55 Aligned_cols=84 Identities=5% Similarity=0.011 Sum_probs=44.7
Q ss_pred CeEEEEeCccC-----ceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc---eEE-
Q 014650 145 DSAFRFNFLTF-----SWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE---WVS- 215 (421)
Q Consensus 145 ~~v~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~---W~~- 215 (421)
+.++..|.... .|+.+.+- ..-..+.+...+ +.+|+....+ .....+..++..+.. |..
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~--~~~yi~Tn~~---------a~~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHG--DRLYILTNDD---------APNGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEET--TEEEEEE-TT----------TT-EEEEEETTSTSGGGEEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccC--CEEEEeeCCC---------CCCcEEEEecccccccccceeE
Confidence 67888888775 67777542 222223344446 8999887643 234567778887765 664
Q ss_pred CCCCCCCCCCeeEEEEccCCeEEEEec
Q 014650 216 MDEMPRFRAGCVGFVAEESGEFWVMGG 242 (421)
Q Consensus 216 ~~~~~~~r~~~~~~~~~~~~~iyv~GG 242 (421)
+.+ +........+...+ +.|++.-=
T Consensus 320 l~~-~~~~~~l~~~~~~~-~~Lvl~~~ 344 (414)
T PF02897_consen 320 LIP-EDEDVSLEDVSLFK-DYLVLSYR 344 (414)
T ss_dssp EE---SSSEEEEEEEEET-TEEEEEEE
T ss_pred EcC-CCCceeEEEEEEEC-CEEEEEEE
Confidence 332 22211223344443 67766543
No 164
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.16 E-value=4.8e+02 Score=23.41 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=52.5
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCCCCCCCC
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDEMPRFRA 224 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~ 224 (421)
..+++||..|.+-.+-= ..--..-..+.+++...+.+.|+.+ .++.++|-.+++-+.+.-+-..+.
T Consensus 81 k~v~vwDV~TGkv~Rr~--rgH~aqVNtV~fNeesSVv~SgsfD------------~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF--RGHLAQVNTVRFNEESSVVASGSFD------------SSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred ceEEEEEcccCeeeeec--ccccceeeEEEecCcceEEEecccc------------ceeEEEEcccCCCCccchhhhhcC
Confidence 46899999886632110 0000111233344324566666653 458889999999888877777887
Q ss_pred CeeEEEEccCCeEEEEeccCCC
Q 014650 225 GCVGFVAEESGEFWVMGGYGDS 246 (421)
Q Consensus 225 ~~~~~~~~~~~~iyv~GG~~~~ 246 (421)
...++.+. +...+.|..++.
T Consensus 147 ~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 147 GVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ceeEEEec--ccEEEeeccCCc
Confidence 76666665 566666666554
No 165
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.95 E-value=5.6e+02 Score=24.05 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=25.6
Q ss_pred CCCcEEECCCCCCCCCCCCCcceEEEEeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCc
Q 014650 92 ANRACRPLPPLPCNPSTYSLCNFTSISLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFS 156 (421)
Q Consensus 92 ~~~~W~~l~~l~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~ 156 (421)
...+|+-.|.+..+ .+-..-+++++++ .|+..|.+ -..+.+||..++.
T Consensus 27 ~s~~~~l~~lF~~~---aH~~sitavAVs~-~~~aSGss-------------DetI~IYDm~k~~ 74 (362)
T KOG0294|consen 27 DSVKPTLKPLFAFS---AHAGSITALAVSG-PYVASGSS-------------DETIHIYDMRKRK 74 (362)
T ss_pred cccceeeecccccc---ccccceeEEEecc-eeEeccCC-------------CCcEEEEeccchh
Confidence 34556555444422 1112233445554 56665542 2469999988765
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=25.23 E-value=7e+02 Score=25.00 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=15.8
Q ss_pred EeCCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccC
Q 014650 118 SLGPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTF 155 (421)
Q Consensus 118 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~ 155 (421)
...-.+|++.|- ....|-+||...+
T Consensus 87 ~~s~S~y~~sgG-------------~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 87 CASQSLYEISGG-------------QSGCVKIWDLRAK 111 (673)
T ss_pred hhhcceeeeccC-------------cCceeeehhhHHH
Confidence 334457777663 2467888888753
No 167
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=24.07 E-value=7.6e+02 Score=24.95 Aligned_cols=97 Identities=14% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCEEEEEcccccCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCc
Q 014650 120 GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSR 199 (421)
Q Consensus 120 ~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 199 (421)
++.-.++||.+ ..+++|...-..-....-+..-|...+++.+..++..+++|-.
T Consensus 454 ~~~~vaVGG~D--------------gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da------------ 507 (603)
T KOG0318|consen 454 DGSEVAVGGQD--------------GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA------------ 507 (603)
T ss_pred CCCEEEEeccc--------------ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc------------
Confidence 55566666642 2377887766554433333445666677777653444444443
Q ss_pred cceEEEEECCCCceEECCC--CCCCCCCeeEEEEccCCeEEEEeccCC
Q 014650 200 ISSVERYDVAKNEWVSMDE--MPRFRAGCVGFVAEESGEFWVMGGYGD 245 (421)
Q Consensus 200 ~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~~~~~~~~~iyv~GG~~~ 245 (421)
...+..||.+++.= .... ....|-. +++..-++++..-|+.+.
T Consensus 508 ~rkvv~yd~~s~~~-~~~~w~FHtakI~--~~aWsP~n~~vATGSlDt 552 (603)
T KOG0318|consen 508 SRKVVLYDVASREV-KTNRWAFHTAKIN--CVAWSPNNKLVATGSLDT 552 (603)
T ss_pred CCcEEEEEcccCce-ecceeeeeeeeEE--EEEeCCCceEEEeccccc
Confidence 33466777766542 1111 2233322 333333366777776554
No 168
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=23.94 E-value=1.2e+02 Score=27.26 Aligned_cols=124 Identities=9% Similarity=0.113 Sum_probs=61.0
Q ss_pred CCCcEEECCCCCCCCCCCCCcc-eEEEEe-CCEEEEEcccccCCCCCCCCCCCCCCeEEEEe-CccCceeecc--ccCCC
Q 014650 92 ANRACRPLPPLPCNPSTYSLCN-FTSISL-GPYIYLLGGSHFDARSFPLDRPLPSDSAFRFN-FLTFSWERIA--PMISP 166 (421)
Q Consensus 92 ~~~~W~~l~~l~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~v~~yd-~~t~~W~~~~--~~~~~ 166 (421)
.-.+|+.....+. ..... .+++.. ++.|+++--.. .. ....+.+. -.-.+|.... .+|.+
T Consensus 143 ~G~tW~~~~~~~~----~~~~~e~~~~~~~dG~l~~~~R~~-~~----------~~~~~~~S~D~G~TWs~~~~~~~~~~ 207 (275)
T PF13088_consen 143 GGKTWSSGSPIPD----GQGECEPSIVELPDGRLLAVFRTE-GN----------DDIYISRSTDGGRTWSPPQPTNLPNP 207 (275)
T ss_dssp TTSSEEEEEECEC----SEEEEEEEEEEETTSEEEEEEEEC-SS----------TEEEEEEESSTTSS-EEEEEEECSSC
T ss_pred CCceeeccccccc----cCCcceeEEEECCCCcEEEEEEcc-CC----------CcEEEEEECCCCCcCCCceecccCcc
Confidence 3466987655431 11222 233333 67888876542 11 11222222 2345798754 45666
Q ss_pred ccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECC-CCceEECCCCCCC---CCCeeEEEEccCCeEEE
Q 014650 167 RGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVA-KNEWVSMDEMPRF---RAGCVGFVAEESGEFWV 239 (421)
Q Consensus 167 r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~---r~~~~~~~~~~~~~iyv 239 (421)
.....++.+.+ +.++++.... ..+ ..-...+... -.+|.....+... ......++...+++|||
T Consensus 208 ~~~~~~~~~~~-g~~~~~~~~~-------~~r-~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 208 NSSISLVRLSD-GRLLLVYNNP-------DGR-SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp CEEEEEEECTT-SEEEEEEECS-------STS-EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred cCCceEEEcCC-CCEEEEEECC-------CCC-CceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 66666666554 7888887631 111 2222223333 5679865444322 23344555554478886
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=23.24 E-value=5.6e+02 Score=23.14 Aligned_cols=132 Identities=13% Similarity=0.147 Sum_probs=67.5
Q ss_pred ccCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeC-CEEEEEcccccCCCCCCCCCCCCCCe
Q 014650 68 NSQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLG-PYIYLLGGSHFDARSFPLDRPLPSDS 146 (421)
Q Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~ 146 (421)
-+.++-+++.||+ ..+++.|.++++.+..=.-.. -+-|+++..+ +--++.|+.+ ..
T Consensus 123 dP~enSi~~AgGD---~~~y~~dlE~G~i~r~~rGHt------DYvH~vv~R~~~~qilsG~ED--------------Gt 179 (325)
T KOG0649|consen 123 DPSENSILFAGGD---GVIYQVDLEDGRIQREYRGHT------DYVHSVVGRNANGQILSGAED--------------GT 179 (325)
T ss_pred ccCCCcEEEecCC---eEEEEEEecCCEEEEEEcCCc------ceeeeeeecccCcceeecCCC--------------cc
Confidence 3455556666664 347889999998876522111 1335555432 2233466642 24
Q ss_pred EEEEeCccCceeec-ccc-----CCCccc--eEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEECCC
Q 014650 147 AFRFNFLTFSWERI-APM-----ISPRGS--FACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVSMDE 218 (421)
Q Consensus 147 v~~yd~~t~~W~~~-~~~-----~~~r~~--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~~~~ 218 (421)
+-++|..|.+=..+ .+- ..|.-+ -.+...+ ..-.|+||.- ..-.++..+.+-+.+-+
T Consensus 180 vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgGp-------------~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 180 VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGGP-------------KLSLWHLRSSESTCVFP 244 (325)
T ss_pred EEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCCC-------------ceeEEeccCCCceEEEe
Confidence 67778777664332 222 222122 1334444 5566777631 24456666666666655
Q ss_pred CCCCCCCeeEEEEccCCeEEEEec
Q 014650 219 MPRFRAGCVGFVAEESGEFWVMGG 242 (421)
Q Consensus 219 ~~~~r~~~~~~~~~~~~~iyv~GG 242 (421)
+|.+. +. +.+. ++..++||
T Consensus 245 ipa~v--~~-v~F~--~d~vl~~G 263 (325)
T KOG0649|consen 245 IPARV--HL-VDFV--DDCVLIGG 263 (325)
T ss_pred cccce--eE-eeee--cceEEEec
Confidence 55443 22 3333 34455555
No 170
>PTZ00420 coronin; Provisional
Probab=23.16 E-value=8.4e+02 Score=25.14 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=28.1
Q ss_pred CeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCc
Q 014650 145 DSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNE 212 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~ 212 (421)
..+.+||..+.+=. ..+.... ....+.+..++.+++.++.+ ..+.+||+.+.+
T Consensus 148 gtIrIWDl~tg~~~--~~i~~~~-~V~SlswspdG~lLat~s~D------------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 148 SFVNIWDIENEKRA--FQINMPK-KLSSLKWNIKGNLLSGTCVG------------KHMHIIDPRKQE 200 (568)
T ss_pred CeEEEEECCCCcEE--EEEecCC-cEEEEEECCCCCEEEEEecC------------CEEEEEECCCCc
Confidence 35788888776411 1111111 12223332227777776643 348889998764
No 171
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=22.55 E-value=6.7e+02 Score=23.80 Aligned_cols=65 Identities=8% Similarity=-0.047 Sum_probs=35.8
Q ss_pred ceEEE--eCCCCceeEecccCCCCC-CCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcceeeE
Q 014650 322 DILRY--DMGLNRWLKETTIPEIRP-CKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKTWRY 398 (421)
Q Consensus 322 ~v~~y--d~~~~~W~~~~~~~~~~~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 398 (421)
.|.+| |+.+++-+.+...+.... +| .|.+..-++.|++.+ .+++. ..|+.-|+++++-+.
T Consensus 267 sI~~f~V~~~~g~L~~~~~~~teg~~PR-~F~i~~~g~~Liaa~-q~sd~---------------i~vf~~d~~TG~L~~ 329 (346)
T COG2706 267 SIAVFSVDPDGGKLELVGITPTEGQFPR-DFNINPSGRFLIAAN-QKSDN---------------ITVFERDKETGRLTL 329 (346)
T ss_pred eEEEEEEcCCCCEEEEEEEeccCCcCCc-cceeCCCCCEEEEEc-cCCCc---------------EEEEEEcCCCceEEe
Confidence 45444 666666555543333211 33 345444445555554 44332 356667899999998
Q ss_pred ecccC
Q 014650 399 IFTKP 403 (421)
Q Consensus 399 i~~~p 403 (421)
+..-.
T Consensus 330 ~~~~~ 334 (346)
T COG2706 330 LGRYA 334 (346)
T ss_pred ccccc
Confidence 77544
No 172
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=22.21 E-value=7.6e+02 Score=24.32 Aligned_cols=67 Identities=7% Similarity=0.098 Sum_probs=41.0
Q ss_pred ceEEEEeCCEEEEEcccc-cCCCCCCCCCCCCCCeEEEEeCccCceeeccccCCCccceEEEEEccCCEEEEEcCC
Q 014650 113 NFTSISLGPYIYLLGGSH-FDARSFPLDRPLPSDSAFRFNFLTFSWERIAPMISPRGSFACAAVRSLNQIIVAGGG 187 (421)
Q Consensus 113 ~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~~~iyv~GG~ 187 (421)
.++....++++=++--.. -. ...+..+.++++|-.-|---.+..+-..-.-+++-.++ +.+|++-=.
T Consensus 379 ~f~~deyngylRvaTt~~dW~------~~de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~g--dv~yiVTfr 446 (603)
T COG4880 379 SFDGDEYNGYLRVATTLSDWT------SEDEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVG--DVLYIVTFR 446 (603)
T ss_pred cccCcccceEEEEEeeecccc------cCCCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeC--ceEEEEEEe
Confidence 455555666655544321 00 11246899999998887776776664443346666777 888888543
No 173
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.34 E-value=6.8e+02 Score=23.40 Aligned_cols=126 Identities=14% Similarity=0.122 Sum_probs=71.1
Q ss_pred cCCceEEEeCCCCCCCccEEEeCCCCcEEECCCCCCCCCCCCCcceEEEEeC-CEEEEEcccccCCCCCCCCCCCCCCeE
Q 014650 69 SQSDLLCIFPQDPSISSPFLFDAANRACRPLPPLPCNPSTYSLCNFTSISLG-PYIYLLGGSHFDARSFPLDRPLPSDSA 147 (421)
Q Consensus 69 ~~~~~~~~~g~~~~~~~~~~~d~~~~~W~~l~~l~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~v 147 (421)
.....+++|+..+ -.-...||+.+.+=...-.-+.. -.-++|++.+.+ ..||..=.... ....-|
T Consensus 14 p~~~~avafaRRP-G~~~~v~D~~~g~~~~~~~a~~g---RHFyGHg~fs~dG~~LytTEnd~~----------~g~G~I 79 (305)
T PF07433_consen 14 PTRPEAVAFARRP-GTFALVFDCRTGQLLQRLWAPPG---RHFYGHGVFSPDGRLLYTTENDYE----------TGRGVI 79 (305)
T ss_pred CCCCeEEEEEeCC-CcEEEEEEcCCCceeeEEcCCCC---CEEecCEEEcCCCCEEEEeccccC----------CCcEEE
Confidence 3456677776642 33477899988775433222222 122467776664 56666544321 234568
Q ss_pred EEEeCccCceeeccccCCC-ccceEEEEEccCC-EEEEE-cCCccccccCCCCCc------cceEEEEECCCCc
Q 014650 148 FRFNFLTFSWERIAPMISP-RGSFACAAVRSLN-QIIVA-GGGSRHSLFGAAGSR------ISSVERYDVAKNE 212 (421)
Q Consensus 148 ~~yd~~t~~W~~~~~~~~~-r~~~~~~~~~~~~-~iyv~-GG~~~~~~~~~~~~~------~~~~~~yd~~t~~ 212 (421)
=+||.. +..+++.+++.. ..-|-+..+.+ + .|.|. ||...+.. .+... ..++-..|..+.+
T Consensus 80 gVyd~~-~~~~ri~E~~s~GIGPHel~l~pD-G~tLvVANGGI~Thpd--~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 80 GVYDAA-RGYRRIGEFPSHGIGPHELLLMPD-GETLVVANGGIETHPD--SGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred EEEECc-CCcEEEeEecCCCcChhhEEEcCC-CCEEEEEcCCCccCcc--cCceecChhhcCCceEEEecCCCc
Confidence 899998 788888887654 44466666654 5 44444 77654421 11122 2245557788876
No 174
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=21.07 E-value=3.7e+02 Score=24.29 Aligned_cols=51 Identities=8% Similarity=-0.042 Sum_probs=30.1
Q ss_pred CceEEEeCCCCceeEec--ccCCCCCCCCceEEEEeCCeEEEEEeecCCCccccccccccccceeeEEEEEeCCcce
Q 014650 321 FDILRYDMGLNRWLKET--TIPEIRPCKKPLGFIVLDGELYVMTVLKGSDLNETRRSQQHKRAGCLFIQIYHPRKKT 395 (421)
Q Consensus 321 ~~v~~yd~~~~~W~~~~--~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 395 (421)
..|..+|+.+ ...+. .||- ....+...-+..+||.||.+. .+++||-.+++
T Consensus 205 ssV~Fwdaks--f~~lKs~k~P~----nV~SASL~P~k~~fVaGged~------------------~~~kfDy~Tge 257 (334)
T KOG0278|consen 205 SSVKFWDAKS--FGLLKSYKMPC----NVESASLHPKKEFFVAGGEDF------------------KVYKFDYNTGE 257 (334)
T ss_pred ceeEEecccc--ccceeeccCcc----ccccccccCCCceEEecCcce------------------EEEEEeccCCc
Confidence 4566666665 33333 3443 233344455678999999762 56777766664
No 175
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=20.59 E-value=5.7e+02 Score=23.93 Aligned_cols=87 Identities=11% Similarity=0.199 Sum_probs=45.8
Q ss_pred CeEEEEeCccCceeeccccCCCc--cceEEEEEccCCEEEEEcCCccccccCCCCCccceEEEEECCCCceEE-CCCCCC
Q 014650 145 DSAFRFNFLTFSWERIAPMISPR--GSFACAAVRSLNQIIVAGGGSRHSLFGAAGSRISSVERYDVAKNEWVS-MDEMPR 221 (421)
Q Consensus 145 ~~v~~yd~~t~~W~~~~~~~~~r--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~ 221 (421)
..+..||..|-+= -++.-|... ..-..+-+.++++|||-|..++. +-.||-.+++... +.....
T Consensus 238 p~~rlYdv~T~Qc-fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~------------IklwDGVS~rCv~t~~~AH~ 304 (430)
T KOG0640|consen 238 PTLRLYDVNTYQC-FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA------------IKLWDGVSNRCVRTIGNAHG 304 (430)
T ss_pred CceeEEeccceeE-eeecCcccccccceeEEEecCCccEEEEeccCCc------------EEeeccccHHHHHHHHhhcC
Confidence 3567788776541 122222221 12233344445899999998643 6677777776532 333332
Q ss_pred CCCCeeEEEEccCCeEEEEeccCC
Q 014650 222 FRAGCVGFVAEESGEFWVMGGYGD 245 (421)
Q Consensus 222 ~r~~~~~~~~~~~~~iyv~GG~~~ 245 (421)
.-.-|.+....+ ++..+..|.+.
T Consensus 305 gsevcSa~Ftkn-~kyiLsSG~DS 327 (430)
T KOG0640|consen 305 GSEVCSAVFTKN-GKYILSSGKDS 327 (430)
T ss_pred CceeeeEEEccC-CeEEeecCCcc
Confidence 222244444443 77666667654
No 176
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=20.49 E-value=2.9e+02 Score=18.86 Aligned_cols=16 Identities=13% Similarity=0.063 Sum_probs=13.5
Q ss_pred eEEEEEeCCcceeeEe
Q 014650 384 LFIQIYHPRKKTWRYI 399 (421)
Q Consensus 384 ~~v~~yd~~~~~W~~i 399 (421)
..|+.||+++|+-+.+
T Consensus 41 iKIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLK 56 (63)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCeEEEE
Confidence 5899999999987654
Done!