Query 014652
Match_columns 421
No_of_seqs 143 out of 667
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:13:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 1.8E-70 3.8E-75 569.0 37.3 390 8-402 134-571 (577)
2 PF04515 Choline_transpo: Plas 100.0 5E-62 1.1E-66 486.2 31.2 302 76-379 2-333 (334)
3 PF10110 GPDPase_memb: Membran 61.1 1.1E+02 0.0023 26.7 10.2 31 268-298 105-135 (149)
4 KOG2611 Neurochondrin/leucine- 42.3 36 0.00077 35.8 4.4 43 356-401 77-119 (698)
5 PF03788 LrgA: LrgA family; I 26.3 1.3E+02 0.0029 24.3 4.6 33 94-128 31-63 (96)
6 PRK15410 DgsA anti-repressor M 26.3 28 0.0006 33.7 0.7 26 368-393 219-244 (260)
7 cd03036 ArsC_like Arsenate Red 24.9 42 0.00091 27.7 1.5 25 274-298 2-26 (111)
8 KOG3814 Signaling protein van 22.3 7.4E+02 0.016 25.5 9.7 37 112-148 181-218 (531)
9 PTZ00370 STEVOR; Provisional 22.1 1.5E+02 0.0032 29.1 4.7 24 74-97 258-281 (296)
10 PF15176 LRR19-TM: Leucine-ric 21.9 1.3E+02 0.0028 24.8 3.6 27 18-44 14-40 (102)
11 KOG3966 p53-mediated apoptosis 21.9 35 0.00075 33.1 0.4 42 370-411 10-61 (360)
12 TIGR01478 STEVOR variant surfa 21.9 1.5E+02 0.0032 29.1 4.6 24 74-97 262-285 (295)
13 PF06167 Peptidase_M90: Glucos 21.6 52 0.0011 31.7 1.6 24 368-391 229-252 (253)
14 COG1422 Predicted membrane pro 21.2 5.7E+02 0.012 23.8 8.1 36 356-396 54-89 (201)
15 PF01102 Glycophorin_A: Glycop 21.2 1.3E+02 0.0028 25.7 3.6 11 90-100 84-94 (122)
16 TIGR02220 phg_TIGR02220 phage 21.0 76 0.0016 24.8 2.1 29 259-294 2-30 (77)
17 COG1033 Predicted exporters of 20.7 1.2E+03 0.027 26.1 16.9 43 352-400 425-467 (727)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-70 Score=569.01 Aligned_cols=390 Identities=30% Similarity=0.485 Sum_probs=334.4
Q ss_pred hhhhhhhhh--hhccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH--h-----h------
Q 014652 8 LSHVIGEMF--SEDYWPIYAVAGGVGALLGWMWLLLLGSPANQMLKISVHILTTYLAVISVLCFW--C-----D------ 72 (421)
Q Consensus 8 ~~~~~~~~~--~~~~~~~~~~~~~ia~vls~~~l~llr~~~~~~v~~~i~~~~~~~~~~~~~~~~--~-----~------ 72 (421)
..+++.+.+ .-.+|+.+...+.++++++.+++..+|.+++.++|..+.++...+......+++ . +
T Consensus 134 ~~~v~~~i~~~i~~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~ 213 (577)
T KOG1362|consen 134 AVSVLHRIFADILRSWYTILSLLGIALVLSLIFTKLLRFLAAILPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFT 213 (577)
T ss_pred hHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecc
Confidence 457788888 668999999999999999999999999999999999865433332222222321 1 0
Q ss_pred ---------h----HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHH
Q 014652 73 ---------Q----FFWGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFG 139 (421)
Q Consensus 73 ---------~----~~~~ii~~i~~~i~~l~~~~~r~rI~~a~~ilk~a~~~i~~~p~l~~~~~~~~~l~~~~~~~w~~~ 139 (421)
+ ...|+++.++.++.+++.+.+|+||+++++++|+|+|++.+.|++.+.|....++..+|.++|+.+
T Consensus 214 ~~~~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~ 293 (577)
T KOG1362|consen 214 SSLFVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFV 293 (577)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 137899999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhcccccc----------cCCCchHHHHHHHHHH-HHHHHHHHhhccccceeceeeeeeeccCCCCCCCCCchHHHHHHH
Q 014652 140 TAGVVASD----------MDDGGRWWLLLVLSVS-LFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRY 208 (421)
Q Consensus 140 ~~g~~~~~----------~~~~~~~~~~~~~lf~-~~W~~~fl~~~~~~tvAg~v~~WYF~~~~~~~~~~~~pv~~s~~r 208 (421)
..+..+.+ .++++...+..++++. ++|+.+|+.|++|+++||++++|||++++ +++|..|+..|++|
T Consensus 294 ~~~l~t~~~~~~gg~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~--~~iP~~p~~~al~r 371 (577)
T KOG1362|consen 294 ALFLVTSGPNSEGGCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDK--QDIPSSPLFSALRR 371 (577)
T ss_pred HHHHhhcccccCCCceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCC--CCCCCchHHHHHHH
Confidence 77766555 1222222233334444 99999999999999999999999999985 78999999999999
Q ss_pred HHhhcchhhhhhhHHHHHHHHHHHHHHHHHhccCC--c---hhHHHhHHHHHHHHHHHHHHhcHHHHHHHHhcCCChhHH
Q 014652 209 AVTTSLGSICYGSLFTAAIRTLRWEIRGIRSKIGN--N---ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRS 283 (421)
Q Consensus 209 a~~~hlGSia~GSliv~ii~~ir~il~~l~~~~~~--~---~~l~~c~~c~l~~~e~~l~~~n~~Ayi~iai~G~~F~~S 283 (421)
+++||+||+|+|||++++++++|.+++|++++.|+ | ++++||++||+||+|++++++|||||+++|+||||||+|
T Consensus 372 a~~yhlGSi~~GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~S 451 (577)
T KOG1362|consen 372 ALRYHLGSICFGSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTS 451 (577)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHH
Confidence 99999999999999999999999999999998764 3 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchhhhhcchhhHHHH-HHHHHHHHHHHhhHHHHHHhhccC--chhHHHHHHHHHH-HHHHHHhHHHHH
Q 014652 284 ARDAWELFQSTGVEALVAYDCSGAVLL-MGTIVGGLITGTCAGAWTYTKWHD--RVVMVGSTAMLMG-MVLVGLAMVVVE 359 (421)
Q Consensus 284 ak~a~~Li~~n~~~~~~~~~~~~~~l~-lg~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ig-~~i~~~f~~v~~ 359 (421)
||++|++++|| ...+++.|.++++++ +||+.++ +++.+++++.....++ +...+.+.++++| |++++.|+++++
T Consensus 452 Akda~~ll~~N-v~~vv~~d~vs~~llflgk~l~~-~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylIa~~f~~v~~ 529 (577)
T KOG1362|consen 452 AKDAWELLRRN-VLRVVDVDLVSDFLLFLGKLLGA-IGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLIAHIFFSVLE 529 (577)
T ss_pred HHHHHHHHHHH-HHHHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 666799999999876 5776554 4444577766666666 6677888899999 999999999999
Q ss_pred HHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHHHhccccc
Q 014652 360 SAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSARA 402 (421)
Q Consensus 360 ~~vdTifvCf~eD~e~~~~~~p~~~~~m~~~~~~~~~~~~~~~ 402 (421)
|+|||+|+||+||||.||++ ||+|++|++.+++..+++++.+
T Consensus 530 m~VdtlflCf~eD~e~n~gs-~~~p~~~~~~l~~~~~~~~~~~ 571 (577)
T KOG1362|consen 530 MCVDTLFLCFAEDPESNDGS-PEKPQFMSEQLLEILGRSNKAP 571 (577)
T ss_pred HHHHHhhheeEecHhhcCCC-CCcceeeeHHHHHhcccccccc
Confidence 99999999999999999999 9999999999999999888744
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=5e-62 Score=486.21 Aligned_cols=302 Identities=29% Similarity=0.535 Sum_probs=273.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHHHHHHHhhccccccc-------
Q 014652 76 WGVAFATAAALQFLYVISVIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAVMLLWMGIWSFGTAGVVASDM------- 148 (421)
Q Consensus 76 ~~ii~~i~~~i~~l~~~~~r~rI~~a~~ilk~a~~~i~~~p~l~~~~~~~~~l~~~~~~~w~~~~~g~~~~~~------- 148 (421)
.++++++++++.++++++.||||+++++++|+|++++++||+++++|++..++..+|.++|+.+..+..+.+.
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~ 81 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCN 81 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 4678888899999999999999999999999999999999999999999999999999999988777654431
Q ss_pred --------------CCCchHHHHHHHHHHHHHHHHHHhhccccceeceeeeeeeccCCCCCCCCCchHHHHHHHHHhhcc
Q 014652 149 --------------DDGGRWWLLLVLSVSLFWTGAVLCNTVHVIVSGMVFLVLIHDGRDSVSMPHNPLVKSLRYAVTTSL 214 (421)
Q Consensus 149 --------------~~~~~~~~~~~~lf~~~W~~~fl~~~~~~tvAg~v~~WYF~~~~~~~~~~~~pv~~s~~ra~~~hl 214 (421)
.|+...++.+|++|+++|+.+|++|++++++||++++|||+++++ ++|+.|+.+|++|+++||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~--~~~~~~~~~s~~~~~~~~~ 159 (334)
T PF04515_consen 82 LPFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKP--NMPKSPVLRSLKRALTYHF 159 (334)
T ss_pred CCcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcc--cccchHHHHHHHHHHHHhH
Confidence 012456888999999999999999999999999999999998743 7899999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhccCCc-----hhHHHhHHHHHHHHHHHHHHhcHHHHHHHHhcCCChhHHHHHHHH
Q 014652 215 GSICYGSLFTAAIRTLRWEIRGIRSKIGNN-----ECLLCCVDFLFHLVETLVRFFNKYAYVQIAVYGKGFNRSARDAWE 289 (421)
Q Consensus 215 GSia~GSliv~ii~~ir~il~~l~~~~~~~-----~~l~~c~~c~l~~~e~~l~~~n~~Ayi~iai~G~~F~~Sak~a~~ 289 (421)
||+|+|||++++++++|.++++++++.+++ +++.||++||++|+|+++||+||+||+++|+||++||+|||++++
T Consensus 160 GSi~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~ 239 (334)
T PF04515_consen 160 GSICFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFE 239 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 999999999999999999999999988763 478899999999999999999999999999999999999999999
Q ss_pred HHHhccchhhhhcchhhHHHHHHHHHHHHHHHhhHHHHHHhh----ccCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014652 290 LFQSTGVEALVAYDCSGAVLLMGTIVGGLITGTCAGAWTYTK----WHDRVVMVGSTAMLMGMVLVGLAMVVVESAVTSI 365 (421)
Q Consensus 290 Li~~n~~~~~~~~~~~~~~l~lg~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ig~~i~~~f~~v~~~~vdTi 365 (421)
|++||+.++..++++++.++++||+.++..+++.++.+.... ..+.+..|.++++++++.+++++++++++++||+
T Consensus 240 L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~f~~v~~~~vdti 319 (334)
T PF04515_consen 240 LIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFISSIFMSVYSSAVDTI 319 (334)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988887777665531 2234567888999999999999999999999999
Q ss_pred HHHHhcccccccCC
Q 014652 366 YICYAEDPLLIHRW 379 (421)
Q Consensus 366 fvCf~eD~e~~~~~ 379 (421)
|+||+||||+++.+
T Consensus 320 ~vc~~~d~e~~~~~ 333 (334)
T PF04515_consen 320 FVCYAEDPEMNKND 333 (334)
T ss_pred HHHHHHHhhhhhcC
Confidence 99999999998765
No 3
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=61.14 E-value=1.1e+02 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhccchh
Q 014652 268 YAYVQIAVYGKGFNRSARDAWELFQSTGVEA 298 (421)
Q Consensus 268 ~Ayi~iai~G~~F~~Sak~a~~Li~~n~~~~ 298 (421)
++.-.+.+.++++.+|-|++|++.++|.++.
T Consensus 105 f~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~ 135 (149)
T PF10110_consen 105 FVLPLIVLENKSFKEALKESWQLTKGRFWRI 135 (149)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCcHHHH
Confidence 5677789999999999999999999998885
No 4
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=42.27 E-value=36 Score=35.81 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHHHhcccc
Q 014652 356 VVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSAR 401 (421)
Q Consensus 356 ~v~~~~vdTifvCf~eD~e~~~~~~p~~~~~m~~~~~~~~~~~~~~ 401 (421)
.||.+..-|++-|||.|||.- +|||..+.+ +.+.+++.++..+
T Consensus 77 ~Vy~~i~itvLacFC~~pElA--sh~~~v~~I-P~llev~~~~~d~ 119 (698)
T KOG2611|consen 77 DVYLQISITVLACFCRVPELA--SHEEMVSRI-PLLLEVMSKGIDT 119 (698)
T ss_pred HHHHHHHHHHHHHHhCChhhc--cCHHHHHhh-hHHHHHHHhcCCC
Confidence 577777789999999999984 567776554 4466777666653
No 5
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=26.34 E-value=1.3e+02 Score=24.32 Aligned_cols=33 Identities=6% Similarity=-0.051 Sum_probs=27.2
Q ss_pred HhhcHHHHHHHHHHHHHhhhhcCchHHHHHHHHHH
Q 014652 94 VIDRLSFTMLVLQKAVKMVWSLPEVKRVAYVFMAV 128 (421)
Q Consensus 94 ~r~rI~~a~~ilk~a~~~i~~~p~l~~~~~~~~~l 128 (421)
.+|+++. +-+|.+++.+-++..++++|....++
T Consensus 31 ~~~~vk~--~~i~~~a~~Ll~~m~lfFvPa~VGi~ 63 (96)
T PF03788_consen 31 MFKIVKL--EWIEPAANFLLKNMALFFVPAGVGIM 63 (96)
T ss_pred HcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777 88999999999999999998775554
No 6
>PRK15410 DgsA anti-repressor MtfA; Provisional
Probab=26.31 E-value=28 Score=33.70 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=21.8
Q ss_pred HHhcccccccCCChhHHHHHHHHHHH
Q 014652 368 CYAEDPLLIHRWDAEFFNQMSETLHQ 393 (421)
Q Consensus 368 Cf~eD~e~~~~~~p~~~~~m~~~~~~ 393 (421)
.|-|+|+.++..||++|+.+.+-+.+
T Consensus 219 ~FFE~P~~l~~~~P~LY~~L~~~yrq 244 (260)
T PRK15410 219 YFFSAPELFAPRFPALYQRFCQFYRQ 244 (260)
T ss_pred hhhhCHHHHHHhCHHHHHHHHHHhCC
Confidence 46789999999999999988776654
No 7
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=24.88 E-value=42 Score=27.72 Aligned_cols=25 Identities=20% Similarity=0.237 Sum_probs=22.5
Q ss_pred HhcCCChhHHHHHHHHHHHhccchh
Q 014652 274 AVYGKGFNRSARDAWELFQSTGVEA 298 (421)
Q Consensus 274 ai~G~~F~~Sak~a~~Li~~n~~~~ 298 (421)
-+||.+-|..+++|.+++.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i~~ 26 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGVDY 26 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCce
Confidence 3799999999999999999998874
No 8
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=22.31 E-value=7.4e+02 Score=25.53 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=25.6
Q ss_pred hhhcCchHHH-HHHHHHHHHHHHHHHHHHhhccccccc
Q 014652 112 VWSLPEVKRV-AYVFMAVMLLWMGIWSFGTAGVVASDM 148 (421)
Q Consensus 112 i~~~p~l~~~-~~~~~~l~~~~~~~w~~~~~g~~~~~~ 148 (421)
..+||.++++ +.+.+++.++-+++|.+-...+...++
T Consensus 181 ~A~mPRvf~~RAlll~LV~~~~fayWLFYiVri~~~r~ 218 (531)
T KOG3814|consen 181 MADMPRVFVVRALLLVLVFLIVFAYWLFYIVRILDERY 218 (531)
T ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 4579999987 555555566666899887776665443
No 9
>PTZ00370 STEVOR; Provisional
Probab=22.11 E-value=1.5e+02 Score=29.12 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 014652 74 FFWGVAFATAAALQFLYVISVIDR 97 (421)
Q Consensus 74 ~~~~ii~~i~~~i~~l~~~~~r~r 97 (421)
...+++++++++++++.+++++||
T Consensus 258 giaalvllil~vvliilYiwlyrr 281 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRR 281 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366677888887766544444444
No 10
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=21.94 E-value=1.3e+02 Score=24.78 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=20.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHh
Q 014652 18 EDYWPIYAVAGGVGALLGWMWLLLLGS 44 (421)
Q Consensus 18 ~~~~~~~~~~~~ia~vls~~~l~llr~ 44 (421)
.++||.+....+.++++|++..+..|+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 589997777777778888877776663
No 11
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=21.94 E-value=35 Score=33.13 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=21.6
Q ss_pred hcccccccCCChhHHHHHHHHHHH----------HHHhcccccccccccccc
Q 014652 370 AEDPLLIHRWDAEFFNQMSETLHQ----------RLQYRSARAREVLTNNRF 411 (421)
Q Consensus 370 ~eD~e~~~~~~p~~~~~m~~~~~~----------~~~~~~~~~~~~~~~~~~ 411 (421)
+.|.|.|.+.|-+..+...+++.+ .+++++++.+|+.++++.
T Consensus 10 ~i~dev~~qe~~~~~~~~~~D~arg~~ds~~gi~~v~iree~akq~~ee~~~ 61 (360)
T KOG3966|consen 10 HIDDEVNRQEHMVKFQIIARDFARGFIDSFKGITFVRIREEEAKQVKEEPPK 61 (360)
T ss_pred EeecccchHHHHHHHHHHHHHHhhcCCccccchhhhhhhHHHHHHhhhcCCc
Confidence 456677666555555554444322 234455555555544433
No 12
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.94 E-value=1.5e+02 Score=29.09 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 014652 74 FFWGVAFATAAALQFLYVISVIDR 97 (421)
Q Consensus 74 ~~~~ii~~i~~~i~~l~~~~~r~r 97 (421)
...+++++++++++++.+++++||
T Consensus 262 giaalvllil~vvliiLYiWlyrr 285 (295)
T TIGR01478 262 GIAALVLIILTVVLIILYIWLYRR 285 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356677888887766544444444
No 13
>PF06167 Peptidase_M90: Glucose-regulated metallo-peptidase M90; InterPro: IPR010384 MtfA (earlier known as YeeI) is a transcription factor that binds Mlc (make large colonies), itself a repressor of glucose and hence a protein important in regulation of the phosphoenolpyruvate:glucose-phosphotransferase (PtsG) system, the major glucose transporter in Escherichia coli. Mlc is a repressor of ptsG, and MtfA is found to bind and inactivate Mlc with high affinity []. The membrane-bound protein EIICBGlc encoded by the ptsG gene is the major glucose transporter in E. coli. ; PDB: 3DL1_A 3KHI_A.
Probab=21.62 E-value=52 Score=31.71 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=18.5
Q ss_pred HHhcccccccCCChhHHHHHHHHH
Q 014652 368 CYAEDPLLIHRWDAEFFNQMSETL 391 (421)
Q Consensus 368 Cf~eD~e~~~~~~p~~~~~m~~~~ 391 (421)
.|-|.|+.++..+||+|+.|++-+
T Consensus 229 ~FFe~P~~l~~~~P~lY~~L~~~y 252 (253)
T PF06167_consen 229 YFFERPQQLKAEFPELYEQLSQFY 252 (253)
T ss_dssp HHHH-HHHCTTT-HHHHHHHHHHH
T ss_pred hhhcCcHHHHHHCHHHHHHHHHHh
Confidence 467899999999999999887644
No 14
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.23 E-value=5.7e+02 Score=23.77 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHHH
Q 014652 356 VVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQ 396 (421)
Q Consensus 356 ~v~~~~vdTifvCf~eD~e~~~~~~p~~~~~m~~~~~~~~~ 396 (421)
+++-...-++..-+..|.|+.++ ++.+-+++++..+
T Consensus 54 avi~gl~~~i~~~~liD~ekm~~-----~qk~m~efq~e~~ 89 (201)
T COG1422 54 AVITGLYITILQKLLIDQEKMKE-----LQKMMKEFQKEFR 89 (201)
T ss_pred HHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHHHHHHH
Confidence 34444445667778889988643 3445555554443
No 15
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.19 E-value=1.3e+02 Score=25.72 Aligned_cols=11 Identities=0% Similarity=-0.285 Sum_probs=4.0
Q ss_pred HHHHHhhcHHH
Q 014652 90 YVISVIDRLSF 100 (421)
Q Consensus 90 ~~~~~r~rI~~ 100 (421)
..+++|||.+.
T Consensus 84 i~y~irR~~Kk 94 (122)
T PF01102_consen 84 ISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHS--
T ss_pred HHHHHHHHhcc
Confidence 33444544444
No 16
>TIGR02220 phg_TIGR02220 phage conserved hypothetical protein, C-terminal domain. This model represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.
Probab=20.98 E-value=76 Score=24.79 Aligned_cols=29 Identities=21% Similarity=0.515 Sum_probs=25.4
Q ss_pred HHHHHHhcHHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 014652 259 ETLVRFFNKYAYVQIAVYGKGFNRSARDAWELFQST 294 (421)
Q Consensus 259 e~~l~~~n~~Ayi~iai~G~~F~~Sak~a~~Li~~n 294 (421)
+.+++|+|+.+ |++|-.++++..++++.+
T Consensus 2 ~eii~yLN~kt-------g~~y~~~~k~~~~lI~aR 30 (77)
T TIGR02220 2 KEIIEYLNEKA-------GKSFKHTTAKHKKLIKAR 30 (77)
T ss_pred hHHHHHHHHhc-------CcccccccHhHHHHHHHH
Confidence 46789999885 999999999999999887
No 17
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=20.66 E-value=1.2e+03 Score=26.11 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHHHHHHHHhcccccccCCChhHHHHHHHHHHHHHHhccc
Q 014652 352 GLAMVVVESAVTSIYICYAEDPLLIHRWDAEFFNQMSETLHQRLQYRSA 400 (421)
Q Consensus 352 ~~f~~v~~~~vdTifvCf~eD~e~~~~~~p~~~~~m~~~~~~~~~~~~~ 400 (421)
......++.. |++.+..-.|++ .|||.-+.|.+ +++.+++.+.
T Consensus 425 ~~i~~~~ggs-~~~~i~~~~~d~----~dp~~l~~md~-l~~~l~~~~~ 467 (727)
T COG1033 425 DFIEKEFGGS-DPITIVLEAEDV----RDPEVLRWMDE-LEEELEKGEE 467 (727)
T ss_pred HHHHHHcCCC-ceEEEEEECCCC----CChHHHHHHHH-HHHHHHhcce
Confidence 4456777777 888888766666 67999877755 7777665553
Done!