Query 014652
Match_columns 421
No_of_seqs 143 out of 667
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nwd_B GAD, glutamate decarbox 29.0 39 0.0013 19.4 2.2 24 377-400 4-27 (28)
2 3khi_A Putative metal-dependen 20.8 30 0.001 32.3 1.1 25 369-393 222-246 (267)
3 3f0i_A Arsenate reductase; str 17.2 54 0.0019 26.2 1.8 26 273-298 6-31 (119)
4 3ogl_Q JAZ1 incomplete degron 17.0 70 0.0024 17.8 1.6 16 386-401 5-20 (21)
5 3rdw_A Putative arsenate reduc 16.6 57 0.002 26.2 1.8 26 273-298 7-32 (121)
6 3fz4_A Putative arsenate reduc 15.4 49 0.0017 26.6 1.0 27 272-298 4-30 (120)
7 3gkx_A Putative ARSC family re 14.4 59 0.002 26.1 1.3 26 273-298 6-31 (120)
8 1rw1_A Conserved hypothetical 13.6 62 0.0021 25.5 1.2 25 274-298 3-27 (114)
9 1s3c_A Arsenate reductase; ARS 13.1 79 0.0027 26.1 1.8 26 273-298 4-29 (141)
10 2kok_A Arsenate reductase; bru 12.7 64 0.0022 25.6 1.0 26 273-298 7-32 (120)
No 1
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=29.04 E-value=39 Score=19.40 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=19.0
Q ss_pred cCCChhHHHHHHHHHHHHHHhccc
Q 014652 377 HRWDAEFFNQMSETLHQRLQYRSA 400 (421)
Q Consensus 377 ~~~~p~~~~~m~~~~~~~~~~~~~ 400 (421)
+++++|.--+|...|.++++++.+
T Consensus 4 kktdsevqlemitawkkfveekkk 27 (28)
T 1nwd_B 4 KKTDSEVQLEMITAWKKFVEEKKK 27 (28)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccchHHHHHHHHHHHHHHHHHhhc
Confidence 455678888899999999987654
No 2
>3khi_A Putative metal-dependent hydrolase; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; 1.95A {Klebsiella pneumoniae subsp} PDB: 3dl1_A
Probab=20.83 E-value=30 Score=32.26 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.4
Q ss_pred HhcccccccCCChhHHHHHHHHHHH
Q 014652 369 YAEDPLLIHRWDAEFFNQMSETLHQ 393 (421)
Q Consensus 369 f~eD~e~~~~~~p~~~~~m~~~~~~ 393 (421)
|-|.|+.++..||++|+.+++-+++
T Consensus 222 FFe~P~~l~~~~P~LY~~L~~fyrq 246 (267)
T 3khi_A 222 FFSAPELFAPRFPALWQRFCHFYRQ 246 (267)
T ss_dssp HHHCHHHHTTTCHHHHHHHHHHHTC
T ss_pred HHhCcHHHHHHCHHHHHHHHHHHCc
Confidence 5579999999999999998887663
No 3
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=17.22 E-value=54 Score=26.22 Aligned_cols=26 Identities=15% Similarity=0.433 Sum_probs=23.5
Q ss_pred HHhcCCChhHHHHHHHHHHHhccchh
Q 014652 273 IAVYGKGFNRSARDAWELFQSTGVEA 298 (421)
Q Consensus 273 iai~G~~F~~Sak~a~~Li~~n~~~~ 298 (421)
+-+||.+-|..+|+|.++++++|.+.
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~ 31 (119)
T 3f0i_A 6 VVIYHNPKCSKSRETLALLENQGIAP 31 (119)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCce
Confidence 56899999999999999999998864
No 4
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=17.02 E-value=70 Score=17.75 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhcccc
Q 014652 386 QMSETLHQRLQYRSAR 401 (421)
Q Consensus 386 ~m~~~~~~~~~~~~~~ 401 (421)
.-...++++++|+++|
T Consensus 5 aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 5 ARRASLHRFLEKRKDR 20 (26)
T ss_pred hHHHHHHHHHHHhhcc
Confidence 3445688999988764
No 5
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=16.57 E-value=57 Score=26.16 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=23.3
Q ss_pred HHhcCCChhHHHHHHHHHHHhccchh
Q 014652 273 IAVYGKGFNRSARDAWELFQSTGVEA 298 (421)
Q Consensus 273 iai~G~~F~~Sak~a~~Li~~n~~~~ 298 (421)
+-+||.+-|..+++|.++++++|.+.
T Consensus 7 i~iY~~p~C~~c~ka~~~L~~~gi~~ 32 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLALVEQQGITP 32 (121)
T ss_dssp CEEECCTTCHHHHHHHHHHHTTTCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 45899999999999999999998764
No 6
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=15.41 E-value=49 Score=26.57 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=23.7
Q ss_pred HHHhcCCChhHHHHHHHHHHHhccchh
Q 014652 272 QIAVYGKGFNRSARDAWELFQSTGVEA 298 (421)
Q Consensus 272 ~iai~G~~F~~Sak~a~~Li~~n~~~~ 298 (421)
++-+||.+-|..+|+|.++++++|.+.
T Consensus 4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~ 30 (120)
T 3fz4_A 4 MLTFYEYPKCSTCRRAKAELDDLAWDY 30 (120)
T ss_dssp SEEEEECSSCHHHHHHHHHHHHHTCCE
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCce
Confidence 345899999999999999999998774
No 7
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=14.37 E-value=59 Score=26.06 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.4
Q ss_pred HHhcCCChhHHHHHHHHHHHhccchh
Q 014652 273 IAVYGKGFNRSARDAWELFQSTGVEA 298 (421)
Q Consensus 273 iai~G~~F~~Sak~a~~Li~~n~~~~ 298 (421)
+-+||.+-|..+++|.++++++|.+.
T Consensus 6 i~iY~~p~C~~c~ka~~~L~~~gi~~ 31 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKWLIENNIEY 31 (120)
T ss_dssp CEEEECTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCce
Confidence 46899999999999999999998774
No 8
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=13.60 E-value=62 Score=25.48 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.2
Q ss_pred HhcCCChhHHHHHHHHHHHhccchh
Q 014652 274 AVYGKGFNRSARDAWELFQSTGVEA 298 (421)
Q Consensus 274 ai~G~~F~~Sak~a~~Li~~n~~~~ 298 (421)
-+||.+-|+.+++|-++++++|.+.
T Consensus 3 ~iY~~~~C~~C~kak~~L~~~gi~~ 27 (114)
T 1rw1_A 3 VLYGIKACDTMKKARTWLDEHKVAY 27 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCChHHHHHHHHHHHCCCce
Confidence 3789999999999999999998774
No 9
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=13.15 E-value=79 Score=26.10 Aligned_cols=26 Identities=23% Similarity=0.540 Sum_probs=23.3
Q ss_pred HHhcCCChhHHHHHHHHHHHhccchh
Q 014652 273 IAVYGKGFNRSARDAWELFQSTGVEA 298 (421)
Q Consensus 273 iai~G~~F~~Sak~a~~Li~~n~~~~ 298 (421)
+-+||.+-|..+++|.++++++|.+.
T Consensus 4 itiY~~p~C~~crkak~~L~~~gi~~ 29 (141)
T 1s3c_A 4 ITIYHNPASGTSRNTLEMIRNSGTEP 29 (141)
T ss_dssp CEEECCTTCHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCE
Confidence 34899999999999999999998874
No 10
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=12.71 E-value=64 Score=25.64 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.2
Q ss_pred HHhcCCChhHHHHHHHHHHHhccchh
Q 014652 273 IAVYGKGFNRSARDAWELFQSTGVEA 298 (421)
Q Consensus 273 iai~G~~F~~Sak~a~~Li~~n~~~~ 298 (421)
+-+||.+-|..+++|.+++.++|.+.
T Consensus 7 i~iY~~~~C~~C~ka~~~L~~~gi~y 32 (120)
T 2kok_A 7 VTIYGIKNCDTMKKARIWLEDHGIDY 32 (120)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCChHHHHHHHHHHHcCCcE
Confidence 45899999999999999999998874
Done!