Query 014654
Match_columns 421
No_of_seqs 393 out of 1943
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 15:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.1E-40 1.1E-44 314.2 35.3 361 44-421 6-406 (491)
2 3o7q_A L-fucose-proton symport 100.0 1.1E-32 3.7E-37 258.3 27.5 315 50-417 26-379 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 4.5E-33 1.5E-37 261.9 16.8 342 47-421 25-382 (451)
4 2gfp_A EMRD, multidrug resista 100.0 1.5E-30 5.1E-35 238.7 8.5 313 54-420 4-325 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 1.6E-26 5.5E-31 219.6 26.4 331 80-421 49-422 (491)
6 2cfq_A Lactose permease; trans 99.9 1.5E-24 5.2E-29 201.3 3.9 309 67-421 24-348 (417)
7 2xut_A Proton/peptide symporte 99.9 1.2E-22 4E-27 194.6 15.5 144 74-217 37-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 3.6E-14 1.2E-18 132.9 12.2 153 68-220 270-433 (451)
9 2cfq_A Lactose permease; trans 99.4 5E-13 1.7E-17 123.7 9.8 141 84-224 258-404 (417)
10 3o7q_A L-fucose-proton symport 99.4 4.4E-12 1.5E-16 118.2 15.4 147 71-220 279-432 (438)
11 4gc0_A D-xylose-proton symport 99.3 1.3E-12 4.5E-17 123.7 8.5 157 68-224 295-467 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.3 3.7E-12 1.3E-16 120.6 9.6 149 70-218 303-469 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1.2E-10 4.2E-15 106.0 2.6 126 77-205 227-361 (375)
14 2xut_A Proton/peptide symporte 98.8 6.1E-09 2.1E-13 99.3 7.4 149 71-219 320-501 (524)
15 2g9p_A Antimicrobial peptide l 65.8 3.4 0.00012 19.2 1.4 14 104-117 2-15 (26)
16 4dve_A Biotin transporter BIOY 30.1 93 0.0032 24.5 5.3 25 91-115 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.1e-40 Score=314.21 Aligned_cols=361 Identities=29% Similarity=0.448 Sum_probs=287.5
Q ss_pred CchhHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCC--------ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchH
Q 014654 44 GSVSVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKL--------TISEFSIFGSLANVGAMVGAIASGQIAEYIGRK 115 (421)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr 115 (421)
+.+..+.+.++++++.+++|+|.+.++..+|.++++++. +.++.|++.+++.+|..+|++++|+++||+|||
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 345677777888899999999999999999999888743 234678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH------------------hhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhh
Q 014654 116 GSLMIAAVPNIIGWLIIS------------------FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGS 177 (421)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 177 (421)
+++.++.+++.+++++++ +++|+++++++|+++|++.|+..+....++.|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999998 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc------------chHHHHHhhhHHHHHHHhhhccccCChHHHHHcCCHHHHHHHHHHHhC
Q 014654 178 VNQLSVTIGIMLAYLLGLFV------------NWRVLAVLGVLPCTLLIPGLFFIPESPRWLAKMGMTEDFESSLQVLRG 245 (421)
Q Consensus 178 ~~~~~~~~G~~~~~~~~~~l------------~w~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 245 (421)
+.+.+..+|..+++.++... .||+.+.+..+..++..+..+++||+|+|+..+++.+++.+.+++...
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 99999999999888776432 588888888888888888889999999999999999999988887654
Q ss_pred CCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhhcCCCchh--HHHH
Q 014654 246 FDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATF 323 (421)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~ 323 (421)
.+...++..+..+.. + +.++....... ...+...+......+.++.+.+.+.+|.+.+.+..+.+... ....
T Consensus 246 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (491)
T 4gc0_A 246 NTLATQAVQEIKHSL-D--HGRKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTI 319 (491)
T ss_dssp HHHHHHHHHHHHHHH-H--HHHHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH-H--hhhhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHH
Confidence 332111111111110 0 01111111111 12334555666666777778888899999999888876655 5566
Q ss_pred HHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccc
Q 014654 324 GLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVG 403 (421)
Q Consensus 324 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (421)
..++..+++.++++++.||+|||+.++.+...+.++++.++........ ....+....++..+++.++.
T Consensus 320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-----------GIVALLSMLFYVAAFAMSWG 388 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-----------hHHHHHHHHHHHHHHHhHHH
Confidence 6788899999999999999999999999998888888777765543322 23444555666778888889
Q ss_pred cchhhhccccCCCCCCCC
Q 014654 404 AIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 404 ~~~~~~~~e~~p~~~rg~ 421 (421)
|+.+++.+|++|++.|++
T Consensus 389 ~~~~~~~~E~fPt~~R~~ 406 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGK 406 (491)
T ss_dssp HHHHHHHHHSSCTTTHHH
T ss_pred HHHHHHHHHhCCHhHHHH
Confidence 999999999999999974
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.1e-32 Score=258.31 Aligned_cols=315 Identities=12% Similarity=0.091 Sum_probs=239.0
Q ss_pred HHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Q 014654 50 FCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW 129 (421)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 129 (421)
.....+++..+..+++.+...+..|.+.+++|++.++.|++.+++.+++.+++++.|+++||+|||++++++.++.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34445556667778888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH---HhhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhcccc--------
Q 014654 130 LII---SFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-------- 198 (421)
Q Consensus 130 ~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-------- 198 (421)
+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 185 (438)
T 3o7q_A 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQS 185 (438)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCC
T ss_pred HHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999 889999999999999999999999999999999999999999999999999999999999987762
Q ss_pred ----------------------hHHHHHhhhHHHHHHHhhhc--cccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHH
Q 014654 199 ----------------------WRVLAVLGVLPCTLLIPGLF--FIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEV 254 (421)
Q Consensus 199 ----------------------w~~~f~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (421)
||+.|++.+...++..+..+ ..||+++. ++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~----------------------- 239 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH----------------------- 239 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC-----------------------
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc-----------------------
Confidence 99999876665555444332 34555320 00
Q ss_pred HHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhhhchHHHHHhHHHH-Hhhc-CCCchh--HHHHHHHHHHH
Q 014654 255 NEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNI-FANA-GISSSN--VATFGLGVVQV 330 (421)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~--~~~~~~~~~~~ 330 (421)
.++++++.+..++++++++..+...+...+... .......+.+.+ .++. |.+... .......++.+
T Consensus 240 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 309 (438)
T 3o7q_A 240 ------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFF 309 (438)
T ss_dssp ------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred ------ccccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHH
Confidence 001122334556777777766655544433333 234455666666 6665 887665 56666788899
Q ss_pred HHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhc
Q 014654 331 VATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIM 410 (421)
Q Consensus 331 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (421)
++.++.+++.||++||+.+..+.++..++++++... + . ...+...++.+++++ ...|..+.+.
T Consensus 310 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~------------~-~~~~~~~~~~g~~~~-~~~~~~~~~~ 372 (438)
T 3o7q_A 310 IGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---G------------G-HVGLIALTLCSAFMS-IQYPTIFSLG 372 (438)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---C------------H-HHHHHHHHHHHHHHT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---C------------C-cHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999999988887777666555431 1 0 112223333344443 3356778888
Q ss_pred cccCCCC
Q 014654 411 SEASELG 417 (421)
Q Consensus 411 ~e~~p~~ 417 (421)
.|.+|++
T Consensus 373 ~~~~~~~ 379 (438)
T 3o7q_A 373 IKNLGQD 379 (438)
T ss_dssp HSSCGGG
T ss_pred Hhhcccc
Confidence 8888876
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=4.5e-33 Score=261.89 Aligned_cols=342 Identities=12% Similarity=0.078 Sum_probs=242.8
Q ss_pred hHHHHHHHHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHH
Q 014654 47 SVVFCVLVVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI 126 (421)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 126 (421)
.++.......++.+..+++.....+.+|.+.+++ .+..+.|++.+++.++..+++++.|+++||+|||++++++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 3455566667777888888888899999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh----hcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c
Q 014654 127 IGWLIISF----SKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N 198 (421)
Q Consensus 127 ~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~ 198 (421)
++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|..++|.+++.+ +
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999998764 7
Q ss_pred -hHHHHHhhhHHHHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHh
Q 014654 199 -WRVLAVLGVLPCTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELK 276 (421)
Q Consensus 199 -w~~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (421)
||+.|++.++..++..+ ..+++||+|+....+++.+.. .+.+.+ .++..+++....+...++.+
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~~~~~ 249 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-----------NDYPDD---YNEKAEQELTAKQIFMQYVL 249 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-----------CC----------------CCTHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-----------cccccc---chhhhhcccccccchHHHHH
Confidence 99999998877666544 456678876532111111000 000000 00000011111122245555
Q ss_pred hccchhHHHHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhcc--CChHHHHH
Q 014654 277 RKRYWFPLMIGIGLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKA--GRRLLLLI 351 (421)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~ 351 (421)
+++..+...+...+.. ........+.|.++++ .|.+..+ .......++.+++.++.+++.||+ +||+.+..
T Consensus 250 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 250 PNKLLWYIAIANVFVY----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp SCHHHHHHHHHHHHHH----HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 5554443333333222 2345566677877776 6887665 666777889999999999999999 99988877
Q ss_pred hhHHHH-HHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 352 SSSGMA-ASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 352 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+..+.. ++++++... + .. ..+......++.+.+.+ +..+....+..|.+|++.||+
T Consensus 326 ~~~~~~~~~~~~~~~~---~-----~~-----~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~ 382 (451)
T 1pw4_A 326 FFMTLVTIATIVYWMN---P-----AG-----NPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGT 382 (451)
T ss_dssp HHHHHHHHHHHHTTSC---C-----TT-----CHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHh---c-----cc-----CHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhh
Confidence 666555 443333211 0 00 11222233333333332 234556789999999987763
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=1.5e-30 Score=238.67 Aligned_cols=313 Identities=13% Similarity=0.092 Sum_probs=225.5
Q ss_pred HHHHHHHHhhhhccccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHH
Q 014654 54 VVALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIIS 133 (421)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 133 (421)
..++..+..+++.+...+.+|.+.+++|.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 44555667777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHH
Q 014654 134 FSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLP 209 (421)
Q Consensus 134 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~ 209 (421)
++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+ +||+.|++.++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998876 899999988877
Q ss_pred HHHHHh-hhccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHH
Q 014654 210 CTLLIP-GLFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGI 288 (421)
Q Consensus 210 ~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (421)
.++..+ ..+++||+++.. + ++++.+..++++++++..+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~---~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVD---A--------------------------------PRTRLLTSYKTLFGNSGFNCYLLML 208 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTT---C--------------------------------CCCCTTTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCCC---c--------------------------------ccccHHHHHHHHhcCcchHHHHHHH
Confidence 777666 556678875410 0 0011222344555555544444333
Q ss_pred HHHHHHhhhchHHHHHhHHHHHhh-cCCCchh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHH-HHHHHHHHH
Q 014654 289 GLLVLQQLSGINGVLFYSSNIFAN-AGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSG-MAASFFLVS 364 (421)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~ 364 (421)
.+... .......+.|.+.++ .|.++.. .......++.+++.++.+++.||.+++ +..+... ...+...+.
T Consensus 209 ~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~ 282 (375)
T 2gfp_A 209 IGGLA----GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWI 282 (375)
T ss_dssp HHHHH----HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 33322 233444455555444 5665444 556666788889999999999998772 2222222 222222111
Q ss_pred HHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCC
Q 014654 365 VAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPN 420 (421)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg 420 (421)
...... ...+.......+.+++++. ..+....+..|..| +.||
T Consensus 283 ~~~~~~-----------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g 325 (375)
T 2gfp_A 283 PDWFGV-----------MNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAG 325 (375)
T ss_dssp HHHHHH-----------HHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHH
T ss_pred Hhhhcc-----------ccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccc
Confidence 111000 1122333344444444443 36677888889888 6554
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=1.6e-26 Score=219.62 Aligned_cols=331 Identities=14% Similarity=0.086 Sum_probs=202.5
Q ss_pred hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhh-hchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhcc
Q 014654 80 LKLTISEFSIFGSLANVGAMVGAIASGQIAEY-IGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYT 158 (421)
Q Consensus 80 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 158 (421)
+|.+..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.++++|+++|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCc--chhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhhccc-cCC----hHHH
Q 014654 159 VPVYIAEIAPQNM--RGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGLFFI-PES----PRWL 227 (421)
Q Consensus 159 ~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~~~~-~e~----~~~~ 227 (421)
..+++.|++|+++ |+.+.++++.+..+|..++|.+++.+ +||+.|++.++..++..+..++. ++. .+..
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP 208 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCC
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCC
Confidence 9999999999988 77788889999999999999988776 89999999776666555443322 211 0000
Q ss_pred HHcCCHHHHHHHHHH---------------HhCCCcchHHHHHHHHH--------HHhhcchhhhHHHHHHhhccchhHH
Q 014654 228 AKMGMTEDFESSLQV---------------LRGFDTDISIEVNEIKR--------SVASSSRRTAIRFAELKRKRYWFPL 284 (421)
Q Consensus 228 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (421)
.++.+.++.++..+. ......+.+........ ......++......+..+.......
T Consensus 209 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (491)
T 4aps_A 209 TDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPL 288 (491)
T ss_dssp SCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHH
T ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 011122222222221 00011010000000000 0000000000000011111111122
Q ss_pred HHHHHHHHHHhhhchHHHHHhHHHHHhh-cCCC--chhHHHHHHHHHHHHHHHHHHHHhhccCChHHHH-----HhhHHH
Q 014654 285 MIGIGLLVLQQLSGINGVLFYSSNIFAN-AGIS--SSNVATFGLGVVQVVATGVNTWLMDKAGRRLLLL-----ISSSGM 356 (421)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~ 356 (421)
.+...+.... +.....+.+.+.++ .+.+ ..........++.+++.++.+++.||++||+... .+..+.
T Consensus 289 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 289 FIAAVLFWAI----EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHH----HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 2222222222 22223334444443 3443 2335566677888888999999999999986544 566666
Q ss_pred HHHHHHHHHHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 357 AASFFLVSVAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+++++++......... +.+. ..+......++.+.+.+ ...+..+.+..|.+|++.||+
T Consensus 365 ~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~ 422 (491)
T 4aps_A 365 GLSFLLMAIPGALYGT-SGKV-----SPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQ 422 (491)
T ss_dssp HHHHTTTHHHHHHCCC-CTTC-----CTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSS
T ss_pred HHHHHHHHHHHHhcCC-CCCc-----cHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHH
Confidence 6666555543322110 0000 11222333333344433 336777889999999999985
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.89 E-value=1.5e-24 Score=201.33 Aligned_cols=309 Identities=12% Similarity=0.030 Sum_probs=177.7
Q ss_pred cccccchHH-HHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH---HHHHhhcch-hhH
Q 014654 67 GYSSPTQAE-IISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGW---LIISFSKDS-SFL 141 (421)
Q Consensus 67 ~~~~~~~~~-i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~~l 141 (421)
+...+.+|. +++++|.+..+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++. +...+++.. ..+
T Consensus 24 ~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (417)
T 2cfq_A 24 GAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103 (417)
T ss_dssp HHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666 556799999999999999999999999999999999999999998887765532 211222221 123
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCCC--CcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHHHHHHHhh
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQ--NMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCTLLIPG 216 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~~~~~~~~ 216 (421)
+..+.+.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+ +||+.|++.++..++..+.
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 4556676666665555445555555443 3456666666666677778888777665 7999999877665555554
Q ss_pred hccccCChHHHHHcCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHhhcchhhhHHHHHHhhccchhHHHHHHHHHHHHhh
Q 014654 217 LFFIPESPRWLAKMGMTEDFESSLQVLRGFDTDISIEVNEIKRSVASSSRRTAIRFAELKRKRYWFPLMIGIGLLVLQQL 296 (421)
Q Consensus 217 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (421)
.++.+|+++. +.++++. + .+++++.....++++++++..+...+........
T Consensus 184 ~~~~~~~~~~---~~~~~~~------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (417)
T 2cfq_A 184 LFFAKTDAPS---SATVANA------------V-----------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-- 235 (417)
T ss_dssp SCSSCCCCSC---SSCSSSS------------S-----------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred HHHcCccccc---ccccccc------------c-----------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHH--
Confidence 5555443310 0000000 0 0000111122345566665544433322222111
Q ss_pred hchHHHHHhHHHHHhhc-CCC---chh--HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHHhh
Q 014654 297 SGINGVLFYSSNIFANA-GIS---SSN--VATFGLGVVQVVATGVNTWLMDKAGRRLLLLISSSGMAASFFLVSVAFFLE 370 (421)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-g~~---~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (421)
+.....+.|.++.+. +.. ... .......++.+++.++.++++||+|||+.+..+..+.+++.+.+... +
T Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~ 310 (417)
T 2cfq_A 236 --YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---T 310 (417)
T ss_dssp --HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---C
T ss_pred --HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---c
Confidence 122222344444332 211 111 33445566778899999999999999998887777666654443210 0
Q ss_pred ccccCCcchhhHHHHHHHHHHHHHHHHHhcccccchhhhccccCCCCCCCC
Q 014654 371 GFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEASELGKPNQ 421 (421)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~rg~ 421 (421)
+ .+..++...+...++. ...+..+.+++|.+|++.||+
T Consensus 311 ~------------~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~ 348 (417)
T 2cfq_A 311 S------------ALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSAT 348 (417)
T ss_dssp S------------HHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHH
T ss_pred c------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHH
Confidence 0 1111222222222222 112334678999999988763
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=1.2e-22 Score=194.57 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=130.8
Q ss_pred HHHHhhhC------CChhhHHHHHHHHHHHHHHHHHHHHHhhhhh-chHHHHHHHHHHHHHHHHHHHhhc-chhhHHHHH
Q 014654 74 AEIISDLK------LTISEFSIFGSLANVGAMVGAIASGQIAEYI-GRKGSLMIAAVPNIIGWLIISFSK-DSSFLFMGR 145 (421)
Q Consensus 74 ~~i~~~~~------~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r 145 (421)
+.+.+++| .+..+.+++.+++.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.++++|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 34678899 9999999999999999999999999999999 999999999999999999999999 999999999
Q ss_pred HhhhcchhhhhccchhhhcccCCCCcchhHhhH---HHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhhh
Q 014654 146 LLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSV---NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPGL 217 (421)
Q Consensus 146 ~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~~ 217 (421)
++.|++.+...+...+++.|++|+++|+++.+. .+.+..+|..++|.+++.+ +||+.|++.++..++..+..
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877666 8899999999999998766 89999998877766655543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.53 E-value=3.6e-14 Score=132.89 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=128.3
Q ss_pred ccccchHHHHhh-hCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhh--chHHHHHHHHHHHH-HHHHHHHhh--cchhhH
Q 014654 68 YSSPTQAEIISD-LKLTISEFSIFGSLANVGAMVGAIASGQIAEYI--GRKGSLMIAAVPNI-IGWLIISFS--KDSSFL 141 (421)
Q Consensus 68 ~~~~~~~~i~~~-~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l 141 (421)
......|.+.++ +|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .+.+.+
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 349 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 344556666666 899999999999999999999999999999999 99999888877766 666666665 367777
Q ss_pred HHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHH-HHHHHHHhhccc----chHHHHHhhhHHHHHHHhh
Q 014654 142 FMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTI-GIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG 216 (421)
Q Consensus 142 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~ 216 (421)
.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.++..++..+.
T Consensus 350 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 429 (451)
T 1pw4_A 350 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVIL 429 (451)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 88889999998888888899999999999999999999999999 999999888766 8999998887777766655
Q ss_pred hccc
Q 014654 217 LFFI 220 (421)
Q Consensus 217 ~~~~ 220 (421)
.+++
T Consensus 430 ~~~~ 433 (451)
T 1pw4_A 430 LIVV 433 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.41 E-value=5e-13 Score=123.74 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=115.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhhhcchhhhhccchhhh
Q 014654 84 ISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYI 163 (421)
Q Consensus 84 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 163 (421)
..+.++..++..++..++.++.|+++||+|||+++..+.++.+++.+..++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888889999999999999999999999999888888877777788888888888888888777777778899
Q ss_pred cccCCCCcchhHhhH-HHHHHHHHHHHHHHhhccc----chHHHHHhhhHHHHHHHhh-hccccCCh
Q 014654 164 AEIAPQNMRGSLGSV-NQLSVTIGIMLAYLLGLFV----NWRVLAVLGVLPCTLLIPG-LFFIPESP 224 (421)
Q Consensus 164 ~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l----~w~~~f~~~~~~~~~~~~~-~~~~~e~~ 224 (421)
.|.+|++.|+.+.++ ++....+|..++|.+++.+ +++..|.+.++..++..+. +...||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999888 4777888999998888765 6778888877766666554 44456554
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.40 E-value=4.4e-12 Score=118.19 Aligned_cols=147 Identities=13% Similarity=-0.047 Sum_probs=118.6
Q ss_pred cchHHH-H-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHhh
Q 014654 71 PTQAEI-I-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLE 148 (421)
Q Consensus 71 ~~~~~i-~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 148 (421)
...|.+ . +.+|.+..+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+.++.. ++.
T Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 357 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLC 357 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHH
T ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHH
Confidence 344544 4 4459999999999999999999999999999999999999999999999999888888877655444 888
Q ss_pred hcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----c-hHHHHHhhhHHHHHHHhhhccc
Q 014654 149 GFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----N-WRVLAVLGVLPCTLLIPGLFFI 220 (421)
Q Consensus 149 G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~-w~~~f~~~~~~~~~~~~~~~~~ 220 (421)
|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+.+ + ++..|++.++..++..+..+..
T Consensus 358 g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 358 SAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999989999865 888888766 5568888888888776 6 8888877655555444443333
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.35 E-value=1.3e-12 Score=123.66 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=111.1
Q ss_pred ccccchHHHHhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHhh---c-chhhHHH
Q 014654 68 YSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---K-DSSFLFM 143 (421)
Q Consensus 68 ~~~~~~~~i~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~ 143 (421)
......+.+.++.+.+..+.........+...++.++.+++.||+|||+.++.+.....++.+..+.. . ..+..++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence 33445667888888888888888888889999999999999999999999999888887777665432 1 1122222
Q ss_pred HHHh-hhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----------chHHHHHhhhHHHHH
Q 014654 144 GRLL-EGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----------NWRVLAVLGVLPCTL 212 (421)
Q Consensus 144 ~r~l-~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----------~w~~~f~~~~~~~~~ 212 (421)
.-++ .+.......+....+.+|.+|.+.|+.+.++......+|..+++.+...+ ++.+.|++.+.++++
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~ 454 (491)
T 4gc0_A 375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 454 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2222 22222233456678999999999999999999888888888776554322 344566666666665
Q ss_pred HHh-hhccccCCh
Q 014654 213 LIP-GLFFIPESP 224 (421)
Q Consensus 213 ~~~-~~~~~~e~~ 224 (421)
..+ .++++||+.
T Consensus 455 ~~i~~~~~~PETk 467 (491)
T 4gc0_A 455 AALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHCCCCT
T ss_pred HHHHHHheecCCC
Confidence 554 567789984
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.32 E-value=3.7e-12 Score=120.61 Aligned_cols=149 Identities=16% Similarity=0.039 Sum_probs=117.7
Q ss_pred ccchHHHH-hhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHH-----HHHHHHHHHHHHHHhhc-------
Q 014654 70 SPTQAEII-SDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLM-----IAAVPNIIGWLIISFSK------- 136 (421)
Q Consensus 70 ~~~~~~i~-~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~~~~~~~~~~~------- 136 (421)
....+.+. +.++.+..+.++..+...++..++.++.|++.||+|||+... .+.++.+++.++..+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445444 446777677888889999999999999999999999986654 67777777776666543
Q ss_pred --chhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc---chHHHHHhhhHHHH
Q 014654 137 --DSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV---NWRVLAVLGVLPCT 211 (421)
Q Consensus 137 --~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l---~w~~~f~~~~~~~~ 211 (421)
+.+.+.+.-++.|++.+...+...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+ ++...|.+.+...+
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSV 462 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6777888889999999999999999999999999999999999999999999999998877 56667777666665
Q ss_pred HHHhhhc
Q 014654 212 LLIPGLF 218 (421)
Q Consensus 212 ~~~~~~~ 218 (421)
+..+..+
T Consensus 463 ~~~~~~~ 469 (491)
T 4aps_A 463 VLGIVLV 469 (491)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.98 E-value=1.2e-10 Score=105.99 Aligned_cols=126 Identities=19% Similarity=0.117 Sum_probs=99.0
Q ss_pred HhhhCCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHH-HHHHHH--HHHh--hcchhhHHHHHHhhhcc
Q 014654 77 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVP-NIIGWL--IISF--SKDSSFLFMGRLLEGFG 151 (421)
Q Consensus 77 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~l~~~r~l~G~~ 151 (421)
++++|.++.+.+++.+...++..++.++.+++.||+|++. ..+..+ ...+.. .... .++.+.+++..++.|++
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 304 (375)
T 2gfp_A 227 GAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFG 304 (375)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 4458889999999999999999999999999999999833 223222 222222 2222 24677777888999999
Q ss_pred hhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc----chHHHHHh
Q 014654 152 VGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV----NWRVLAVL 205 (421)
Q Consensus 152 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l----~w~~~f~~ 205 (421)
.+...+...+++.|.+| ++|+++.++.+....+|..++|.+.+.+ +|+..+++
T Consensus 305 ~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 305 AGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999999998 8999999999999999999998888776 45555554
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.80 E-value=6.1e-09 Score=99.29 Aligned_cols=149 Identities=17% Similarity=0.121 Sum_probs=102.2
Q ss_pred cchHHHHhhhCCCh-hhHHHHHHHHHHHHHHHHHHHHHhh----hhhch----HHHHHHHHHHHHHHHHHHHhh------
Q 014654 71 PTQAEIISDLKLTI-SEFSIFGSLANVGAMVGAIASGQIA----EYIGR----KGSLMIAAVPNIIGWLIISFS------ 135 (421)
Q Consensus 71 ~~~~~i~~~~~~s~-~~~~~~~s~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~~~~~~~~~~------ 135 (421)
+..+....+.+.+. ...+++.+...++..++.++.+++. ||.|+ ++.+..+.++.+++.++.++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 399 (524)
T 2xut_A 320 STWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDG 399 (524)
T ss_dssp THHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTT
T ss_pred hhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33443334444322 2456666666666677777776664 55543 356677888888877776664
Q ss_pred ---cchhhHHHHHHhhhcchhhhhccchhhhcccCCCCcchhHhhHHHHHHHHHHHHHHHhhccc------ch-------
Q 014654 136 ---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV------NW------- 199 (421)
Q Consensus 136 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l------~w------- 199 (421)
.+.+.+++..++.|++.+...+...+++.|..|+++|++++++.+....+|..+++.+.+.+ +|
T Consensus 400 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~ 479 (524)
T 2xut_A 400 GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMS 479 (524)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 36677888899999999999999999999999999999999999999999999999988766 24
Q ss_pred --HHHHHhhhHHHHHHHhhhcc
Q 014654 200 --RVLAVLGVLPCTLLIPGLFF 219 (421)
Q Consensus 200 --~~~f~~~~~~~~~~~~~~~~ 219 (421)
+..|++.+...++..+..++
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
T 2xut_A 480 VTAFQMFFFAGFAILAAIVFAL 501 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccHHHHHHHHHHHHHHHHHH
Confidence 33366555555555544433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=65.77 E-value=3.4 Score=19.18 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.3
Q ss_pred HHHHhhhhhchHHH
Q 014654 104 ASGQIAEYIGRKGS 117 (421)
Q Consensus 104 ~~g~l~dr~Grr~~ 117 (421)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=30.13 E-value=93 Score=24.51 Aligned_cols=25 Identities=4% Similarity=-0.039 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchH
Q 014654 91 GSLANVGAMVGAIASGQIAEYIGRK 115 (421)
Q Consensus 91 ~s~~~~~~~~~~~~~g~l~dr~Grr 115 (421)
..-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3567788888899999999987543
Done!