Query 014655
Match_columns 421
No_of_seqs 338 out of 2748
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0536 Obg Predicted GTPase [ 100.0 3.4E-84 7.4E-89 635.7 22.1 293 74-414 1-297 (369)
2 PRK12299 obgE GTPase CgtA; Rev 100.0 1.7E-74 3.7E-79 580.7 26.0 287 75-409 1-288 (335)
3 PRK12297 obgE GTPase CgtA; Rev 100.0 2.7E-73 5.9E-78 586.3 25.1 290 75-412 1-294 (424)
4 PRK12296 obgE GTPase CgtA; Rev 100.0 3.5E-73 7.6E-78 593.1 23.4 288 74-410 2-302 (500)
5 TIGR02729 Obg_CgtA Obg family 100.0 1.9E-72 4E-77 564.9 23.9 286 76-409 1-290 (329)
6 PRK12298 obgE GTPase CgtA; Rev 100.0 2.3E-72 5E-77 575.4 23.9 289 74-410 1-293 (390)
7 KOG1489 Predicted GTP-binding 100.0 9.2E-71 2E-75 535.2 19.8 303 62-414 27-335 (366)
8 PF01018 GTP1_OBG: GTP1/OBG; 100.0 7.7E-44 1.7E-48 321.5 5.0 155 76-271 1-156 (156)
9 cd01898 Obg Obg subfamily. Th 99.9 2.5E-21 5.5E-26 173.2 12.6 131 273-410 1-132 (170)
10 COG1084 Predicted GTPase [Gene 99.8 3.4E-21 7.3E-26 190.0 9.2 161 234-408 129-296 (346)
11 COG0012 Predicted GTPase, prob 99.8 7.3E-21 1.6E-25 191.1 11.7 112 272-383 2-133 (372)
12 PTZ00258 GTP-binding protein; 99.8 1.6E-20 3.6E-25 192.1 11.4 116 270-385 19-153 (390)
13 COG1163 DRG Predicted GTPase [ 99.8 2.7E-20 5.8E-25 183.2 9.9 89 273-369 64-152 (365)
14 COG1160 Predicted GTPases [Gen 99.8 4.3E-20 9.3E-25 189.2 11.6 135 273-421 4-141 (444)
15 PRK09601 GTP-binding protein Y 99.8 7.9E-20 1.7E-24 185.4 12.3 114 273-386 3-135 (364)
16 PRK09602 translation-associate 99.8 1.4E-19 3E-24 186.4 12.9 113 273-385 2-143 (396)
17 cd01899 Ygr210 Ygr210 subfamil 99.8 1.5E-19 3.3E-24 181.2 11.6 111 275-385 1-140 (318)
18 COG2262 HflX GTPases [General 99.8 1.7E-19 3.6E-24 182.6 11.3 134 270-414 190-326 (411)
19 COG0486 ThdF Predicted GTPase 99.8 2.6E-19 5.7E-24 183.8 10.0 141 247-409 198-341 (454)
20 PF02421 FeoB_N: Ferrous iron 99.8 6.8E-20 1.5E-24 165.9 3.5 119 273-408 1-121 (156)
21 cd01881 Obg_like The Obg-like 99.8 1.2E-18 2.5E-23 156.3 11.3 127 277-410 1-138 (176)
22 TIGR03156 GTP_HflX GTP-binding 99.8 6.1E-19 1.3E-23 179.1 10.4 126 271-407 188-316 (351)
23 PRK11058 GTPase HflX; Provisio 99.8 1E-18 2.2E-23 181.6 11.3 126 271-407 196-324 (426)
24 cd01900 YchF YchF subfamily. 99.8 6.8E-19 1.5E-23 172.9 8.8 112 275-386 1-131 (274)
25 COG1159 Era GTPase [General fu 99.8 1.4E-18 3E-23 170.0 10.9 122 274-409 8-131 (298)
26 TIGR00436 era GTP-binding prot 99.7 4.2E-18 9.1E-23 166.6 11.0 121 274-409 2-124 (270)
27 KOG1491 Predicted GTP-binding 99.7 6.4E-18 1.4E-22 167.1 10.5 113 273-385 21-152 (391)
28 PF01926 MMR_HSR1: 50S ribosom 99.7 8.9E-18 1.9E-22 142.9 9.0 113 274-401 1-116 (116)
29 cd01896 DRG The developmentall 99.7 3.1E-17 6.6E-22 157.6 10.4 90 273-370 1-90 (233)
30 TIGR00092 GTP-binding protein 99.7 4.7E-17 1E-21 165.3 10.2 115 273-387 3-137 (368)
31 cd01897 NOG NOG1 is a nucleola 99.7 1.5E-16 3.1E-21 142.3 11.9 126 273-409 1-130 (168)
32 cd01894 EngA1 EngA1 subfamily. 99.7 1.5E-16 3.3E-21 139.4 11.3 130 276-419 1-132 (157)
33 cd01878 HflX HflX subfamily. 99.7 2.3E-16 4.9E-21 146.8 13.0 129 270-409 39-170 (204)
34 TIGR03594 GTPase_EngA ribosome 99.7 4E-16 8.6E-21 161.4 12.5 133 274-420 1-135 (429)
35 PRK03003 GTP-binding protein D 99.7 5.9E-16 1.3E-20 163.0 12.7 137 270-420 36-174 (472)
36 cd01879 FeoB Ferrous iron tran 99.6 8.8E-16 1.9E-20 135.2 10.9 115 277-408 1-117 (158)
37 PRK05291 trmE tRNA modificatio 99.6 3.6E-16 7.8E-21 163.7 9.9 125 268-408 211-337 (449)
38 PRK00089 era GTPase Era; Revie 99.6 5.8E-16 1.2E-20 152.6 10.6 120 274-407 7-128 (292)
39 PRK00093 GTP-binding protein D 99.6 9.5E-16 2.1E-20 159.1 12.7 134 273-420 2-137 (435)
40 COG1160 Predicted GTPases [Gen 99.6 5.2E-16 1.1E-20 159.3 10.1 123 271-407 177-304 (444)
41 TIGR00450 mnmE_trmE_thdF tRNA 99.6 9.3E-16 2E-20 160.2 12.0 124 268-407 199-325 (442)
42 KOG1191 Mitochondrial GTPase [ 99.6 5.5E-16 1.2E-20 159.6 9.7 130 268-407 264-404 (531)
43 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.9E-15 4.2E-20 132.2 10.7 121 273-409 2-124 (157)
44 cd01861 Rab6 Rab6 subfamily. 99.6 2.6E-15 5.6E-20 133.1 11.4 118 274-406 2-119 (161)
45 PRK15494 era GTPase Era; Provi 99.6 1.9E-15 4.2E-20 152.8 11.0 121 273-407 53-175 (339)
46 cd04161 Arl2l1_Arl13_like Arl2 99.6 5.9E-15 1.3E-19 133.5 12.2 127 274-419 1-127 (167)
47 TIGR03598 GTPase_YsxC ribosome 99.6 3.7E-15 7.9E-20 136.3 10.6 121 271-408 17-145 (179)
48 cd01895 EngA2 EngA2 subfamily. 99.6 6.8E-15 1.5E-19 130.4 12.0 121 273-407 3-128 (174)
49 TIGR03594 GTPase_EngA ribosome 99.6 5.1E-15 1.1E-19 153.2 12.7 121 272-406 172-297 (429)
50 cd04157 Arl6 Arl6 subfamily. 99.6 8.8E-15 1.9E-19 129.6 12.1 120 274-409 1-121 (162)
51 KOG1486 GTP-binding protein DR 99.6 1.2E-15 2.5E-20 145.9 6.7 110 273-392 63-172 (364)
52 PRK00093 GTP-binding protein D 99.6 5.1E-15 1.1E-19 153.7 12.0 123 271-407 172-299 (435)
53 cd04160 Arfrp1 Arfrp1 subfamil 99.6 7.5E-15 1.6E-19 131.1 11.2 119 274-408 1-123 (167)
54 smart00178 SAR Sar1p-like memb 99.6 9.2E-15 2E-19 134.6 12.0 129 272-419 17-145 (184)
55 PRK03003 GTP-binding protein D 99.6 7.1E-15 1.5E-19 154.8 12.5 123 271-407 210-337 (472)
56 cd00154 Rab Rab family. Rab G 99.6 1.4E-14 3E-19 126.1 11.5 117 274-405 2-118 (159)
57 PRK09518 bifunctional cytidyla 99.6 9.3E-15 2E-19 161.0 12.9 137 270-420 273-411 (712)
58 cd01868 Rab11_like Rab11-like. 99.6 1.1E-14 2.4E-19 130.0 10.9 121 273-408 4-124 (165)
59 cd01866 Rab2 Rab2 subfamily. 99.6 1.6E-14 3.5E-19 130.2 11.7 121 272-407 4-124 (168)
60 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 2E-14 4.4E-19 128.0 12.3 117 273-407 1-117 (168)
61 cd04163 Era Era subfamily. Er 99.6 1.7E-14 3.7E-19 126.4 11.2 121 273-407 4-126 (168)
62 cd04171 SelB SelB subfamily. 99.6 1.9E-14 4.1E-19 127.3 11.3 115 274-407 2-119 (164)
63 cd04159 Arl10_like Arl10-like 99.6 2.2E-14 4.7E-19 125.0 11.5 126 274-417 1-126 (159)
64 cd04119 RJL RJL (RabJ-Like) su 99.6 2.1E-14 4.5E-19 127.3 11.5 120 274-406 2-124 (168)
65 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 2.7E-14 5.9E-19 129.8 12.3 118 272-408 15-132 (174)
66 cd01865 Rab3 Rab3 subfamily. 99.6 2.1E-14 4.6E-19 128.8 11.2 121 273-408 2-122 (165)
67 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 1.9E-14 4E-19 128.8 10.8 121 273-408 3-123 (166)
68 cd01867 Rab8_Rab10_Rab13_like 99.6 2E-14 4.3E-19 129.2 11.0 122 272-408 3-124 (167)
69 smart00175 RAB Rab subfamily o 99.6 2.5E-14 5.5E-19 126.6 11.5 119 274-407 2-120 (164)
70 cd04138 H_N_K_Ras_like H-Ras/N 99.6 3E-14 6.5E-19 125.5 11.2 121 273-408 2-122 (162)
71 cd04142 RRP22 RRP22 subfamily. 99.6 2.7E-14 5.8E-19 133.7 11.5 128 274-407 2-131 (198)
72 cd04114 Rab30 Rab30 subfamily. 99.6 3.2E-14 6.8E-19 127.3 11.4 125 270-409 5-129 (169)
73 cd01864 Rab19 Rab19 subfamily. 99.5 2.7E-14 5.9E-19 127.8 10.9 121 273-408 4-124 (165)
74 PRK09518 bifunctional cytidyla 99.5 2.2E-14 4.8E-19 158.0 12.4 122 272-407 450-576 (712)
75 cd01863 Rab18 Rab18 subfamily. 99.5 3.7E-14 7.9E-19 125.9 11.4 119 274-408 2-122 (161)
76 cd04151 Arl1 Arl1 subfamily. 99.5 3.9E-14 8.5E-19 126.0 11.5 115 274-408 1-116 (158)
77 cd04150 Arf1_5_like Arf1-Arf5- 99.5 3.9E-14 8.4E-19 127.2 11.6 116 274-408 2-117 (159)
78 cd04136 Rap_like Rap-like subf 99.5 3.4E-14 7.5E-19 125.9 11.1 120 273-407 2-121 (163)
79 cd04109 Rab28 Rab28 subfamily. 99.5 4.9E-14 1.1E-18 132.9 12.6 122 274-407 2-124 (215)
80 COG0370 FeoB Fe2+ transport sy 99.5 1.3E-14 2.7E-19 155.1 9.4 118 274-408 5-124 (653)
81 cd04158 ARD1 ARD1 subfamily. 99.5 4.4E-14 9.5E-19 127.8 11.6 115 274-407 1-115 (169)
82 PRK09554 feoB ferrous iron tra 99.5 3.1E-14 6.6E-19 157.6 12.8 121 273-409 4-129 (772)
83 cd00880 Era_like Era (E. coli 99.5 8.6E-14 1.9E-18 119.9 12.9 121 277-410 1-122 (163)
84 cd04113 Rab4 Rab4 subfamily. 99.5 3.8E-14 8.2E-19 126.0 10.9 121 273-408 1-121 (161)
85 cd04112 Rab26 Rab26 subfamily. 99.5 3.7E-14 8E-19 131.0 11.1 119 274-407 2-121 (191)
86 COG0218 Predicted GTPase [Gene 99.5 2.9E-14 6.2E-19 133.0 10.1 123 271-410 23-153 (200)
87 cd04123 Rab21 Rab21 subfamily. 99.5 5.3E-14 1.1E-18 123.9 11.4 120 274-408 2-121 (162)
88 PRK04213 GTP-binding protein; 99.5 6.9E-14 1.5E-18 129.6 12.5 119 273-408 10-146 (201)
89 cd04101 RabL4 RabL4 (Rab-like4 99.5 7.5E-14 1.6E-18 124.2 12.2 121 273-408 1-123 (164)
90 cd04156 ARLTS1 ARLTS1 subfamil 99.5 7.2E-14 1.6E-18 123.9 12.1 116 274-407 1-116 (160)
91 cd00878 Arf_Arl Arf (ADP-ribos 99.5 6.3E-14 1.4E-18 124.2 11.6 116 274-408 1-116 (158)
92 cd04145 M_R_Ras_like M-Ras/R-R 99.5 5.5E-14 1.2E-18 124.7 11.0 121 273-408 3-123 (164)
93 cd04122 Rab14 Rab14 subfamily. 99.5 6.7E-14 1.4E-18 125.5 11.1 120 273-408 3-123 (166)
94 cd00879 Sar1 Sar1 subfamily. 99.5 1E-13 2.2E-18 127.1 12.3 117 272-407 19-135 (190)
95 cd04149 Arf6 Arf6 subfamily. 99.5 8.8E-14 1.9E-18 126.2 11.8 116 273-407 10-125 (168)
96 cd00876 Ras Ras family. The R 99.5 6.4E-14 1.4E-18 123.2 10.4 119 274-407 1-119 (160)
97 cd04106 Rab23_lke Rab23-like s 99.5 8.3E-14 1.8E-18 123.5 11.2 120 274-407 2-121 (162)
98 KOG1490 GTP-binding protein CR 99.5 1.7E-14 3.7E-19 148.7 7.6 124 273-409 169-298 (620)
99 cd04116 Rab9 Rab9 subfamily. 99.5 1.2E-13 2.6E-18 124.0 12.1 122 273-407 6-129 (170)
100 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 1.2E-13 2.6E-18 128.6 12.5 121 274-406 2-124 (201)
101 cd01862 Rab7 Rab7 subfamily. 99.5 1E-13 2.3E-18 123.9 11.6 120 274-406 2-123 (172)
102 cd04124 RabL2 RabL2 subfamily. 99.5 9.5E-14 2E-18 124.4 11.0 115 274-406 2-118 (161)
103 PRK00454 engB GTP-binding prot 99.5 8.6E-14 1.9E-18 127.8 11.0 121 271-408 23-151 (196)
104 KOG1423 Ras-like GTPase ERA [C 99.5 3E-14 6.5E-19 139.6 8.2 127 270-409 70-202 (379)
105 cd00881 GTP_translation_factor 99.5 1.2E-13 2.7E-18 124.8 11.6 113 274-407 1-129 (189)
106 cd04146 RERG_RasL11_like RERG/ 99.5 5.2E-14 1.1E-18 125.9 9.1 121 274-407 1-121 (165)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 1.5E-13 3.3E-18 126.2 12.3 121 273-407 4-124 (183)
108 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 1.5E-13 3.4E-18 124.0 12.0 116 274-409 1-116 (164)
109 smart00177 ARF ARF-like small 99.5 1.4E-13 3.1E-18 125.5 11.8 128 273-419 14-141 (175)
110 smart00173 RAS Ras subfamily o 99.5 1.3E-13 2.8E-18 122.7 11.2 119 274-407 2-120 (164)
111 cd01890 LepA LepA subfamily. 99.5 1.4E-13 3E-18 124.4 11.5 118 274-407 2-134 (179)
112 cd04144 Ras2 Ras2 subfamily. 99.5 8.1E-14 1.8E-18 128.6 10.1 120 274-407 1-121 (190)
113 cd04175 Rap1 Rap1 subgroup. T 99.5 1E-13 2.2E-18 123.8 10.4 120 273-407 2-121 (164)
114 cd04115 Rab33B_Rab33A Rab33B/R 99.5 1.6E-13 3.4E-18 123.9 11.7 123 273-408 3-125 (170)
115 PLN00223 ADP-ribosylation fact 99.5 1.8E-13 4E-18 125.9 11.8 126 273-419 18-145 (181)
116 cd04154 Arl2 Arl2 subfamily. 99.5 2.2E-13 4.8E-18 123.3 11.9 117 273-408 15-131 (173)
117 cd04140 ARHI_like ARHI subfami 99.5 1.8E-13 3.9E-18 122.8 11.0 121 273-407 2-123 (165)
118 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.6E-13 3.4E-18 127.7 10.9 124 274-408 2-132 (196)
119 cd04125 RabA_like RabA-like su 99.5 2.6E-13 5.6E-18 124.6 12.0 121 273-408 1-121 (188)
120 KOG0410 Predicted GTP binding 99.5 3.4E-14 7.3E-19 140.2 6.2 131 268-407 174-309 (410)
121 cd01860 Rab5_related Rab5-rela 99.5 2.7E-13 5.7E-18 120.4 11.5 117 273-406 2-120 (163)
122 cd04118 Rab24 Rab24 subfamily. 99.5 1.8E-13 3.8E-18 125.9 10.7 119 273-407 1-120 (193)
123 cd04155 Arl3 Arl3 subfamily. 99.5 2.6E-13 5.7E-18 122.0 11.5 129 272-419 14-142 (173)
124 cd04139 RalA_RalB RalA/RalB su 99.5 2.7E-13 5.8E-18 119.8 11.2 118 274-406 2-119 (164)
125 cd01893 Miro1 Miro1 subfamily. 99.5 2.7E-13 5.7E-18 122.0 11.2 118 274-409 2-120 (166)
126 cd04110 Rab35 Rab35 subfamily. 99.5 3.1E-13 6.7E-18 125.9 11.9 119 272-408 6-126 (199)
127 PTZ00133 ADP-ribosylation fact 99.5 2.9E-13 6.2E-18 124.6 11.5 129 272-419 17-145 (182)
128 PLN03118 Rab family protein; P 99.5 4E-13 8.6E-18 126.1 12.1 121 272-408 14-136 (211)
129 cd01889 SelB_euk SelB subfamil 99.5 2.3E-13 4.9E-18 125.9 10.2 123 273-408 1-136 (192)
130 PLN03110 Rab GTPase; Provision 99.5 4.2E-13 9.1E-18 127.0 12.0 122 272-408 12-133 (216)
131 cd04127 Rab27A Rab27a subfamil 99.5 4.5E-13 9.8E-18 121.4 11.5 128 272-407 4-135 (180)
132 cd04120 Rab12 Rab12 subfamily. 99.5 5.1E-13 1.1E-17 125.8 12.1 119 274-408 2-121 (202)
133 cd04176 Rap2 Rap2 subgroup. T 99.5 4.3E-13 9.3E-18 119.4 11.0 120 273-407 2-121 (163)
134 cd00877 Ran Ran (Ras-related n 99.4 5.3E-13 1.1E-17 120.6 11.2 118 274-407 2-119 (166)
135 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 5.1E-13 1.1E-17 121.4 11.1 120 273-407 1-121 (170)
136 cd01874 Cdc42 Cdc42 subfamily. 99.4 4.2E-13 9.1E-18 122.6 10.5 118 273-407 2-120 (175)
137 cd04132 Rho4_like Rho4-like su 99.4 5.8E-13 1.3E-17 121.7 11.4 118 274-407 2-120 (187)
138 cd01891 TypA_BipA TypA (tyrosi 99.4 5.9E-13 1.3E-17 123.3 11.5 115 272-407 2-132 (194)
139 cd04137 RheB Rheb (Ras Homolog 99.4 4.1E-13 9E-18 121.8 10.1 120 273-407 2-121 (180)
140 cd04166 CysN_ATPS CysN_ATPS su 99.4 3.4E-13 7.5E-18 126.9 9.7 114 274-407 1-145 (208)
141 TIGR00231 small_GTP small GTP- 99.4 8.6E-13 1.9E-17 113.7 11.5 120 273-407 2-123 (161)
142 PTZ00369 Ras-like protein; Pro 99.4 5.1E-13 1.1E-17 123.2 10.5 120 273-407 6-125 (189)
143 cd04117 Rab15 Rab15 subfamily. 99.4 1.1E-12 2.3E-17 117.8 12.1 118 274-408 2-121 (161)
144 smart00174 RHO Rho (Ras homolo 99.4 5.9E-13 1.3E-17 119.8 10.4 116 275-407 1-117 (174)
145 cd01892 Miro2 Miro2 subfamily. 99.4 5.5E-13 1.2E-17 120.9 10.3 121 270-407 2-123 (169)
146 cd04147 Ras_dva Ras-dva subfam 99.4 5.7E-13 1.2E-17 123.9 10.4 119 274-407 1-119 (198)
147 PF08477 Miro: Miro-like prote 99.4 1.4E-13 2.9E-18 116.7 5.3 115 274-403 1-119 (119)
148 cd00157 Rho Rho (Ras homology) 99.4 5.2E-13 1.1E-17 119.2 9.2 120 273-409 1-121 (171)
149 cd04111 Rab39 Rab39 subfamily. 99.4 1.1E-12 2.5E-17 123.7 11.7 122 273-407 3-124 (211)
150 cd04135 Tc10 TC10 subfamily. 99.4 8.9E-13 1.9E-17 118.6 10.4 117 274-407 2-119 (174)
151 PLN03108 Rab family protein; P 99.4 1.1E-12 2.5E-17 123.4 11.3 121 272-407 6-126 (210)
152 cd04177 RSR1 RSR1 subgroup. R 99.4 1.2E-12 2.5E-17 117.9 10.9 121 273-408 2-122 (168)
153 cd04143 Rhes_like Rhes_like su 99.4 1E-12 2.3E-17 127.4 10.9 119 274-406 2-127 (247)
154 cd01876 YihA_EngB The YihA (En 99.4 1.1E-12 2.4E-17 115.3 9.9 118 274-408 1-126 (170)
155 TIGR02528 EutP ethanolamine ut 99.4 8E-13 1.7E-17 115.3 9.0 102 274-407 2-103 (142)
156 cd04148 RGK RGK subfamily. Th 99.4 1.2E-12 2.5E-17 124.6 10.3 119 274-408 2-122 (221)
157 PF00025 Arf: ADP-ribosylation 99.4 4.9E-13 1.1E-17 122.5 7.5 127 272-418 14-141 (175)
158 cd04121 Rab40 Rab40 subfamily. 99.4 1.7E-12 3.8E-17 120.8 11.2 119 272-407 6-125 (189)
159 cd01870 RhoA_like RhoA-like su 99.4 1.3E-12 2.8E-17 117.7 9.9 118 273-407 2-120 (175)
160 cd01884 EF_Tu EF-Tu subfamily. 99.4 1.9E-12 4.2E-17 121.3 11.4 115 273-408 3-134 (195)
161 TIGR00437 feoB ferrous iron tr 99.4 8.8E-13 1.9E-17 142.5 10.2 113 279-408 1-115 (591)
162 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 2.1E-12 4.6E-17 117.6 11.0 120 273-407 3-122 (172)
163 cd01871 Rac1_like Rac1-like su 99.4 2.6E-12 5.7E-17 117.3 11.4 118 273-407 2-120 (174)
164 cd04134 Rho3 Rho3 subfamily. 99.4 1.7E-12 3.6E-17 119.9 10.1 118 274-408 2-120 (189)
165 cd00882 Ras_like_GTPase Ras-li 99.4 2.3E-12 5E-17 109.2 10.2 120 277-410 1-120 (157)
166 cd01875 RhoG RhoG subfamily. 99.4 2.9E-12 6.4E-17 118.7 11.6 119 273-408 4-123 (191)
167 cd04105 SR_beta Signal recogni 99.4 2.5E-12 5.5E-17 120.8 11.3 123 273-409 1-126 (203)
168 PLN03071 GTP-binding nuclear p 99.4 3.1E-12 6.8E-17 121.5 11.2 117 273-407 14-132 (219)
169 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 3.9E-12 8.4E-17 121.7 11.6 118 273-407 2-120 (222)
170 cd01853 Toc34_like Toc34-like 99.4 3E-12 6.5E-17 124.5 11.0 131 268-408 27-165 (249)
171 cd04102 RabL3 RabL3 (Rab-like3 99.4 6.6E-12 1.4E-16 118.4 13.0 124 274-407 2-144 (202)
172 cd01886 EF-G Elongation factor 99.4 3.9E-12 8.4E-17 125.0 11.8 113 274-407 1-131 (270)
173 cd04126 Rab20 Rab20 subfamily. 99.4 3.6E-12 7.7E-17 121.7 11.1 113 274-406 2-114 (220)
174 cd04130 Wrch_1 Wrch-1 subfamil 99.4 3.3E-12 7.2E-17 115.6 10.2 117 274-407 2-119 (173)
175 PF00009 GTP_EFTU: Elongation 99.4 1.7E-12 3.6E-17 119.9 7.9 116 271-405 2-135 (188)
176 cd04131 Rnd Rnd subfamily. Th 99.3 4E-12 8.7E-17 116.9 10.2 117 273-406 2-119 (178)
177 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 7.6E-12 1.6E-16 115.7 11.1 117 273-406 6-123 (182)
178 cd04133 Rop_like Rop subfamily 99.3 5.5E-12 1.2E-16 116.1 10.2 118 273-407 2-120 (176)
179 PRK15467 ethanolamine utilizat 99.3 5E-12 1.1E-16 114.1 9.4 104 274-407 3-106 (158)
180 KOG0073 GTP-binding ADP-ribosy 99.3 8.4E-12 1.8E-16 112.6 10.2 126 272-418 16-143 (185)
181 COG3596 Predicted GTPase [Gene 99.3 4.2E-12 9E-17 123.5 8.9 125 271-407 38-163 (296)
182 cd04169 RF3 RF3 subfamily. Pe 99.3 1.6E-11 3.5E-16 120.5 12.9 115 273-408 3-139 (267)
183 KOG1487 GTP-binding protein DR 99.3 1.4E-12 3E-17 125.5 5.1 122 273-404 60-181 (358)
184 cd04168 TetM_like Tet(M)-like 99.3 1.1E-11 2.5E-16 119.4 11.5 113 274-407 1-131 (237)
185 CHL00071 tufA elongation facto 99.3 1.1E-11 2.4E-16 128.5 11.6 117 272-409 12-145 (409)
186 TIGR00487 IF-2 translation ini 99.3 1.2E-11 2.5E-16 133.6 12.1 117 271-407 86-202 (587)
187 cd04128 Spg1 Spg1p. Spg1p (se 99.3 1.2E-11 2.6E-16 114.1 10.2 116 274-406 2-118 (182)
188 cd04170 EF-G_bact Elongation f 99.3 1.6E-11 3.5E-16 119.9 11.7 113 274-407 1-131 (268)
189 PRK12317 elongation factor 1-a 99.3 9.9E-12 2.1E-16 129.2 10.6 114 273-406 7-153 (425)
190 PF00350 Dynamin_N: Dynamin fa 99.3 7.7E-12 1.7E-16 112.3 8.5 67 328-402 102-168 (168)
191 cd01883 EF1_alpha Eukaryotic e 99.3 1.5E-11 3.3E-16 116.7 10.8 114 274-406 1-151 (219)
192 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 1.4E-11 3.1E-16 118.6 10.6 117 273-406 14-131 (232)
193 PRK05306 infB translation init 99.3 1.9E-11 4.1E-16 135.3 13.0 118 269-407 287-404 (787)
194 PF09439 SRPRB: Signal recogni 99.3 5.8E-12 1.3E-16 116.8 7.2 120 273-408 4-128 (181)
195 KOG0084 GTPase Rab1/YPT1, smal 99.3 1.1E-11 2.3E-16 115.0 8.9 124 268-408 5-130 (205)
196 KOG0075 GTP-binding ADP-ribosy 99.3 6.8E-12 1.5E-16 111.4 7.0 132 269-420 17-150 (186)
197 TIGR00484 EF-G translation elo 99.3 2.7E-11 5.8E-16 133.3 12.2 118 270-408 8-143 (689)
198 PF00071 Ras: Ras family; Int 99.3 1.9E-11 4E-16 108.5 8.7 118 274-407 1-119 (162)
199 CHL00189 infB translation init 99.3 2.5E-11 5.5E-16 133.4 11.5 121 270-407 242-362 (742)
200 cd01885 EF2 EF2 (for archaea a 99.2 3.8E-11 8.3E-16 114.9 10.9 119 274-405 2-138 (222)
201 TIGR00991 3a0901s02IAP34 GTP-b 99.2 3.4E-11 7.3E-16 120.1 10.9 127 271-407 37-168 (313)
202 cd01888 eIF2_gamma eIF2-gamma 99.2 4.6E-11 9.9E-16 112.1 11.1 124 274-408 2-153 (203)
203 smart00176 RAN Ran (Ras-relate 99.2 6.3E-11 1.4E-15 111.4 11.9 111 278-406 1-113 (200)
204 PLN03127 Elongation factor Tu; 99.2 3.9E-11 8.5E-16 125.8 11.5 119 270-409 59-194 (447)
205 cd04167 Snu114p Snu114p subfam 99.2 4.1E-11 8.8E-16 113.0 10.5 116 274-405 2-136 (213)
206 cd04103 Centaurin_gamma Centau 99.2 4.4E-11 9.6E-16 107.7 9.6 111 274-405 2-112 (158)
207 TIGR00475 selB selenocysteine- 99.2 4.4E-11 9.5E-16 129.2 11.2 114 274-408 2-119 (581)
208 PRK00007 elongation factor G; 99.2 5.5E-11 1.2E-15 131.0 12.1 118 270-408 8-143 (693)
209 PRK12739 elongation factor G; 99.2 4.7E-11 1E-15 131.4 11.6 118 270-408 6-141 (691)
210 PRK12736 elongation factor Tu; 99.2 6.4E-11 1.4E-15 122.3 11.1 120 270-410 10-146 (394)
211 PRK12735 elongation factor Tu; 99.2 7.8E-11 1.7E-15 121.7 11.5 117 271-408 11-144 (396)
212 PLN00023 GTP-binding protein; 99.2 9.3E-11 2E-15 117.7 11.6 126 273-407 22-166 (334)
213 cd01873 RhoBTB RhoBTB subfamil 99.2 6.4E-11 1.4E-15 110.8 9.9 122 273-406 3-134 (195)
214 TIGR01393 lepA GTP-binding pro 99.2 7.4E-11 1.6E-15 127.7 11.7 120 272-407 3-137 (595)
215 cd04129 Rho2 Rho2 subfamily. 99.2 6E-11 1.3E-15 109.2 9.1 116 274-406 3-119 (187)
216 KOG0078 GTP-binding protein SE 99.2 9.6E-11 2.1E-15 109.8 10.4 122 270-408 10-133 (207)
217 cd04104 p47_IIGP_like p47 (47- 99.2 1E-10 2.2E-15 109.3 10.2 113 273-406 2-121 (197)
218 PRK00049 elongation factor Tu; 99.2 9.7E-11 2.1E-15 121.0 10.8 119 270-409 10-145 (396)
219 PRK09866 hypothetical protein; 99.2 2.7E-10 5.8E-15 122.2 14.1 74 327-406 230-303 (741)
220 PRK10218 GTP-binding protein; 99.2 1.7E-10 3.6E-15 125.0 12.6 116 271-407 4-135 (607)
221 TIGR01394 TypA_BipA GTP-bindin 99.2 1.4E-10 3E-15 125.5 11.9 114 273-407 2-131 (594)
222 PLN03126 Elongation factor Tu; 99.2 1.3E-10 2.9E-15 122.6 11.2 119 270-409 79-214 (478)
223 TIGR00491 aIF-2 translation in 99.2 1.9E-10 4.1E-15 124.2 12.5 121 273-406 5-135 (590)
224 TIGR00485 EF-Tu translation el 99.2 1.3E-10 2.9E-15 119.8 10.3 119 270-409 10-145 (394)
225 PTZ00132 GTP-binding nuclear p 99.2 3.3E-10 7.1E-15 106.6 12.1 119 273-407 10-128 (215)
226 PRK00741 prfC peptide chain re 99.1 2.3E-10 4.9E-15 122.3 12.3 120 268-408 6-147 (526)
227 TIGR00483 EF-1_alpha translati 99.1 1.5E-10 3.2E-15 120.5 10.5 116 272-406 7-155 (426)
228 TIGR02836 spore_IV_A stage IV 99.1 1.8E-10 3.9E-15 118.2 10.6 124 273-404 18-192 (492)
229 TIGR00503 prfC peptide chain r 99.1 2.3E-10 5E-15 122.2 11.7 119 268-407 7-147 (527)
230 PRK05506 bifunctional sulfate 99.1 1.3E-10 2.8E-15 126.8 10.0 117 270-406 22-171 (632)
231 COG1100 GTPase SAR1 and relate 99.1 4.2E-10 9E-15 105.2 11.9 120 273-409 6-128 (219)
232 cd01850 CDC_Septin CDC/Septin. 99.1 3.6E-10 7.7E-15 111.5 11.3 123 273-408 5-159 (276)
233 smart00053 DYNc Dynamin, GTPas 99.1 5.4E-10 1.2E-14 108.2 12.1 77 327-408 125-208 (240)
234 PRK04004 translation initiatio 99.1 6.3E-10 1.4E-14 120.3 12.9 120 273-405 7-136 (586)
235 PRK10512 selenocysteinyl-tRNA- 99.1 4.6E-10 9.9E-15 122.0 11.9 114 274-407 2-119 (614)
236 KOG0087 GTPase Rab11/YPT3, sma 99.1 2E-10 4.4E-15 107.6 7.8 119 268-406 10-133 (222)
237 KOG0070 GTP-binding ADP-ribosy 99.1 1.3E-10 2.8E-15 106.8 6.3 122 273-419 18-145 (181)
238 PRK05433 GTP-binding protein L 99.1 4.9E-10 1.1E-14 121.5 12.0 122 270-407 5-141 (600)
239 cd04165 GTPBP1_like GTPBP1-lik 99.1 6.5E-10 1.4E-14 106.4 11.3 69 327-408 84-154 (224)
240 KOG0394 Ras-related GTPase [Ge 99.1 1.7E-10 3.6E-15 106.1 6.6 120 270-407 7-133 (210)
241 TIGR03680 eif2g_arch translati 99.1 4.4E-10 9.6E-15 116.5 10.5 124 273-408 5-150 (406)
242 PRK05124 cysN sulfate adenylyl 99.1 5.4E-10 1.2E-14 118.1 11.0 118 270-407 25-175 (474)
243 PF10662 PduV-EutP: Ethanolami 99.1 9.4E-10 2E-14 98.3 10.1 117 273-421 2-122 (143)
244 TIGR02034 CysN sulfate adenyly 99.1 7.8E-10 1.7E-14 114.7 10.8 114 274-407 2-148 (406)
245 KOG1954 Endocytosis/signaling 99.1 3.8E-10 8.3E-15 113.3 8.1 138 270-412 56-231 (532)
246 KOG0092 GTPase Rab5/YPT51 and 99.0 4.2E-10 9.1E-15 104.1 7.7 115 273-407 6-125 (200)
247 PRK13351 elongation factor G; 99.0 9.1E-10 2E-14 121.2 11.7 116 271-407 7-140 (687)
248 PF04548 AIG1: AIG1 family; I 99.0 6E-10 1.3E-14 105.5 8.7 126 274-409 2-133 (212)
249 cd01882 BMS1 Bms1. Bms1 is an 99.0 1E-09 2.2E-14 105.0 10.2 107 273-408 40-149 (225)
250 KOG0080 GTPase Rab18, small G 99.0 5E-10 1.1E-14 101.0 7.4 119 271-405 10-130 (209)
251 KOG0077 Vesicle coat complex C 99.0 3.4E-10 7.4E-15 102.5 5.9 119 270-409 18-138 (193)
252 KOG0074 GTP-binding ADP-ribosy 99.0 6.7E-10 1.4E-14 98.3 7.2 124 273-418 18-145 (185)
253 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.0 1.3E-09 2.9E-14 101.1 9.5 122 273-409 23-145 (221)
254 KOG0098 GTPase Rab2, small G p 99.0 1.1E-09 2.4E-14 101.0 8.5 122 272-408 6-127 (216)
255 KOG0079 GTP-binding protein H- 99.0 1.7E-09 3.6E-14 96.4 9.3 122 270-408 6-128 (198)
256 KOG0095 GTPase Rab30, small G 99.0 1.7E-09 3.7E-14 96.5 9.2 125 268-409 3-129 (213)
257 KOG0093 GTPase Rab3, small G p 99.0 1.5E-09 3.2E-14 96.7 8.8 136 269-419 18-158 (193)
258 TIGR00993 3a0901s04IAP86 chlor 99.0 1.6E-09 3.4E-14 116.7 10.5 129 268-407 114-251 (763)
259 PRK04000 translation initiatio 99.0 1.9E-09 4.1E-14 112.0 10.5 125 273-409 10-156 (411)
260 KOG0090 Signal recognition par 99.0 1.7E-09 3.6E-14 101.8 8.1 119 273-409 39-162 (238)
261 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 1.8E-09 3.8E-14 104.1 8.3 126 274-411 1-130 (232)
262 COG2229 Predicted GTPase [Gene 99.0 7.6E-09 1.7E-13 95.3 11.9 119 272-409 10-138 (187)
263 PTZ00416 elongation factor 2; 98.9 4.9E-09 1.1E-13 117.8 12.1 123 270-405 17-157 (836)
264 PTZ00141 elongation factor 1- 98.9 5.5E-09 1.2E-13 109.7 11.4 113 273-405 8-158 (446)
265 TIGR00490 aEF-2 translation el 98.9 4.5E-09 9.8E-14 116.4 9.8 121 270-407 17-153 (720)
266 PLN00116 translation elongatio 98.9 5.2E-09 1.1E-13 117.7 10.1 123 270-405 17-163 (843)
267 PRK13768 GTPase; Provisional 98.9 4.2E-09 9E-14 102.6 7.7 80 327-410 97-180 (253)
268 PRK12740 elongation factor G; 98.9 1E-08 2.2E-13 112.6 11.5 110 278-408 1-128 (668)
269 KOG0395 Ras-related GTPase [Ge 98.9 8E-09 1.7E-13 97.1 8.5 120 273-407 4-123 (196)
270 PTZ00327 eukaryotic translatio 98.8 1.9E-08 4.1E-13 105.9 10.3 125 273-408 35-187 (460)
271 PRK07560 elongation factor EF- 98.8 1.7E-08 3.6E-13 112.1 10.1 121 270-407 18-154 (731)
272 KOG0071 GTP-binding ADP-ribosy 98.8 3E-08 6.6E-13 87.8 9.5 126 273-419 18-145 (180)
273 cd04178 Nucleostemin_like Nucl 98.8 6.2E-09 1.3E-13 95.9 5.0 55 272-337 117-172 (172)
274 KOG3883 Ras family small GTPas 98.8 4.6E-08 9.9E-13 87.9 10.0 126 272-409 9-135 (198)
275 KOG0076 GTP-binding ADP-ribosy 98.8 4.3E-09 9.2E-14 96.1 3.1 126 270-411 15-145 (197)
276 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.1E-08 2.4E-13 91.8 5.1 54 273-337 103-157 (157)
277 COG0532 InfB Translation initi 98.7 8.5E-08 1.8E-12 100.7 12.2 130 273-420 6-137 (509)
278 PLN00043 elongation factor 1-a 98.7 5E-08 1.1E-12 102.5 10.6 113 273-405 8-158 (447)
279 KOG0086 GTPase Rab4, small G p 98.7 4.8E-08 1E-12 87.6 8.5 121 269-409 6-131 (214)
280 KOG1145 Mitochondrial translat 98.7 1.1E-07 2.4E-12 99.8 11.0 132 268-419 149-282 (683)
281 cd01855 YqeH YqeH. YqeH is an 98.7 2.3E-08 5.1E-13 92.4 4.9 54 273-337 128-190 (190)
282 KOG0091 GTPase Rab39, small G 98.6 8.8E-08 1.9E-12 86.9 8.1 118 273-408 9-132 (213)
283 COG1161 Predicted GTPases [Gen 98.6 2.3E-08 5E-13 100.8 4.7 57 273-340 133-190 (322)
284 COG1217 TypA Predicted membran 98.6 1.2E-07 2.6E-12 98.1 9.0 136 271-419 4-153 (603)
285 TIGR03597 GTPase_YqeH ribosome 98.6 6.5E-08 1.4E-12 98.9 6.9 86 273-369 155-249 (360)
286 cd01849 YlqF_related_GTPase Yl 98.6 5.1E-08 1.1E-12 87.4 5.0 56 271-337 99-155 (155)
287 PRK09563 rbgA GTPase YlqF; Rev 98.6 7.3E-08 1.6E-12 95.5 6.4 60 271-341 120-180 (287)
288 KOG1532 GTPase XAB1, interacts 98.6 2E-07 4.4E-12 91.0 9.1 80 328-411 117-200 (366)
289 COG5256 TEF1 Translation elong 98.6 2.1E-07 4.6E-12 95.2 9.6 115 273-406 8-159 (428)
290 PF03029 ATP_bind_1: Conserved 98.6 3.7E-08 8.1E-13 95.3 3.8 76 328-407 92-171 (238)
291 COG0480 FusA Translation elong 98.6 2.7E-07 6E-12 101.3 10.5 120 269-408 7-144 (697)
292 KOG0462 Elongation factor-type 98.5 1.7E-07 3.7E-12 98.5 8.1 122 269-408 57-193 (650)
293 TIGR03596 GTPase_YlqF ribosome 98.5 8.2E-08 1.8E-12 94.6 5.3 58 272-340 118-176 (276)
294 KOG0088 GTPase Rab21, small G 98.5 5.7E-08 1.2E-12 87.6 3.0 119 273-408 14-134 (218)
295 PF05049 IIGP: Interferon-indu 98.5 2.4E-07 5.2E-12 94.9 7.8 114 270-404 33-153 (376)
296 KOG0393 Ras-related small GTPa 98.5 1.4E-07 3.1E-12 88.5 5.4 130 273-418 5-135 (198)
297 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 1.9E-07 4.1E-12 82.5 5.1 54 274-338 85-139 (141)
298 PRK13796 GTPase YqeH; Provisio 98.4 2E-07 4.3E-12 95.6 4.7 57 273-340 161-223 (365)
299 KOG1707 Predicted Ras related/ 98.4 1.3E-06 2.8E-11 92.6 10.2 119 273-409 10-132 (625)
300 cd01851 GBP Guanylate-binding 98.4 3.1E-06 6.8E-11 81.0 11.3 92 272-369 7-103 (224)
301 KOG2486 Predicted GTPase [Gene 98.4 1.3E-06 2.7E-11 85.7 8.4 119 272-407 136-263 (320)
302 PF00735 Septin: Septin; Inte 98.3 4.5E-07 9.8E-12 89.8 5.0 124 273-409 5-159 (281)
303 KOG4252 GTP-binding protein [S 98.3 4.3E-07 9.4E-12 83.6 4.1 124 268-408 16-140 (246)
304 cd01856 YlqF YlqF. Proteins o 98.3 7.2E-07 1.6E-11 81.3 5.5 55 272-337 115-170 (171)
305 KOG1424 Predicted GTP-binding 98.3 3.3E-07 7.2E-12 95.8 3.6 58 272-340 314-372 (562)
306 KOG0072 GTP-binding ADP-ribosy 98.3 5.4E-07 1.2E-11 80.3 4.0 128 273-420 19-147 (182)
307 COG0481 LepA Membrane GTPase L 98.3 8.9E-07 1.9E-11 91.9 6.0 125 268-408 5-144 (603)
308 COG4917 EutP Ethanolamine util 98.3 2.1E-06 4.5E-11 75.0 7.2 106 273-409 2-107 (148)
309 KOG0468 U5 snRNP-specific prot 98.3 2.7E-06 5.7E-11 91.2 9.0 122 271-405 127-262 (971)
310 COG4108 PrfC Peptide chain rel 98.3 3.4E-06 7.4E-11 87.0 9.4 120 268-408 8-149 (528)
311 PTZ00099 rab6; Provisional 98.3 2.1E-06 4.5E-11 79.1 7.0 71 327-406 29-99 (176)
312 KOG0458 Elongation factor 1 al 98.3 3.6E-06 7.8E-11 89.2 9.5 125 271-414 176-338 (603)
313 KOG0083 GTPase Rab26/Rab37, sm 98.2 3E-07 6.5E-12 80.9 1.1 114 277-406 2-117 (192)
314 TIGR00750 lao LAO/AO transport 98.2 1.2E-06 2.7E-11 87.3 5.5 63 326-408 126-188 (300)
315 cd03112 CobW_like The function 98.2 2E-06 4.3E-11 77.9 6.1 71 326-404 86-158 (158)
316 KOG3886 GTP-binding protein [S 98.2 2.4E-06 5.2E-11 81.7 5.8 128 273-414 5-138 (295)
317 PRK14845 translation initiatio 98.2 1E-05 2.2E-10 92.4 11.8 110 284-406 473-592 (1049)
318 KOG0081 GTPase Rab27, small G 98.2 1.2E-06 2.5E-11 79.4 3.1 126 272-408 9-140 (219)
319 KOG0461 Selenocysteine-specifi 98.2 1E-05 2.2E-10 81.4 10.0 123 273-410 8-140 (522)
320 PRK09435 membrane ATPase/prote 98.2 4.4E-06 9.4E-11 84.7 7.6 62 326-408 148-210 (332)
321 COG2895 CysN GTPases - Sulfate 98.1 7.2E-06 1.6E-10 82.7 8.6 118 270-408 4-155 (431)
322 COG5257 GCD11 Translation init 98.1 4E-06 8.8E-11 83.6 6.7 129 273-414 11-162 (415)
323 KOG0097 GTPase Rab14, small G 98.1 5.9E-06 1.3E-10 73.5 7.0 123 269-408 8-132 (215)
324 PRK12288 GTPase RsgA; Reviewed 98.1 2.5E-06 5.4E-11 87.0 4.4 67 274-351 207-284 (347)
325 cd01859 MJ1464 MJ1464. This f 98.1 4.6E-06 9.9E-11 74.5 5.5 55 272-337 101-156 (156)
326 COG5019 CDC3 Septin family pro 98.1 1.5E-05 3.3E-10 80.7 9.3 130 273-410 24-180 (373)
327 PRK12289 GTPase RsgA; Reviewed 98.1 3.1E-06 6.7E-11 86.5 4.2 57 274-341 174-238 (352)
328 KOG0448 Mitofusin 1 GTPase, in 98.1 1.7E-05 3.6E-10 85.6 9.7 129 270-409 107-278 (749)
329 KOG2484 GTPase [General functi 98.0 2.9E-06 6.3E-11 86.5 3.2 73 255-342 239-312 (435)
330 COG3276 SelB Selenocysteine-sp 98.0 2.3E-05 5E-10 81.0 9.3 116 274-409 2-120 (447)
331 COG0050 TufB GTPases - transla 98.0 1.7E-05 3.6E-10 78.4 7.7 120 272-412 12-148 (394)
332 KOG2423 Nucleolar GTPase [Gene 98.0 2.9E-06 6.4E-11 86.4 2.6 59 271-340 306-365 (572)
333 TIGR00157 ribosome small subun 98.0 5.1E-06 1.1E-10 80.7 3.8 56 274-341 122-185 (245)
334 PF03308 ArgK: ArgK protein; 97.8 1.9E-06 4.1E-11 84.0 -2.2 65 327-411 122-186 (266)
335 PRK00098 GTPase RsgA; Reviewed 97.8 2.4E-05 5.3E-10 78.0 5.5 56 273-339 165-228 (298)
336 KOG1144 Translation initiation 97.8 4.2E-05 9.2E-10 83.0 7.1 124 268-405 472-605 (1064)
337 PF03193 DUF258: Protein of un 97.8 2.2E-05 4.8E-10 71.7 4.3 57 273-340 36-100 (161)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 97.7 5.2E-05 1.1E-09 66.9 5.7 56 349-408 3-58 (141)
339 KOG2655 Septin family protein 97.7 0.00011 2.3E-09 75.0 8.5 127 273-410 22-176 (366)
340 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00013 2.8E-09 55.4 5.6 47 352-403 10-58 (58)
341 KOG1547 Septin CDC10 and relat 97.6 0.00037 8E-09 67.4 10.1 125 273-409 47-201 (336)
342 KOG2485 Conserved ATP/GTP bind 97.6 5.8E-05 1.3E-09 75.2 4.7 65 271-343 142-212 (335)
343 TIGR03348 VI_IcmF type VI secr 97.6 0.00017 3.6E-09 84.4 8.5 132 270-406 109-257 (1169)
344 cd01854 YjeQ_engC YjeQ/EngC. 97.6 5.9E-05 1.3E-09 74.9 4.1 57 273-340 162-226 (287)
345 cd03114 ArgK-like The function 97.6 0.00056 1.2E-08 61.4 9.9 58 326-403 91-148 (148)
346 KOG1673 Ras GTPases [General f 97.6 7E-05 1.5E-09 67.8 4.0 112 273-405 21-137 (205)
347 KOG0447 Dynamin-like GTP bindi 97.6 0.00041 9E-09 73.4 10.2 133 271-407 307-494 (980)
348 TIGR00073 hypB hydrogenase acc 97.5 0.00012 2.6E-09 68.9 5.4 26 270-295 20-45 (207)
349 COG1703 ArgK Putative periplas 97.5 6.9E-05 1.5E-09 74.4 3.0 64 326-409 143-206 (323)
350 cd01858 NGP_1 NGP-1. Autoanti 97.5 0.00019 4.2E-09 64.2 5.5 53 352-408 3-55 (157)
351 COG5192 BMS1 GTP-binding prote 97.5 0.00025 5.3E-09 75.3 6.9 112 273-411 70-182 (1077)
352 KOG0467 Translation elongation 97.4 0.00026 5.7E-09 77.3 6.9 119 272-404 9-136 (887)
353 TIGR01425 SRP54_euk signal rec 97.4 0.00047 1E-08 72.2 8.5 69 327-406 183-253 (429)
354 KOG1707 Predicted Ras related/ 97.4 0.00089 1.9E-08 71.5 10.4 120 270-409 423-543 (625)
355 KOG0465 Mitochondrial elongati 97.3 0.00013 2.7E-09 78.1 3.3 128 268-408 35-172 (721)
356 cd03115 SRP The signal recogni 97.3 0.0011 2.4E-08 60.2 8.7 73 327-408 83-155 (173)
357 PRK10416 signal recognition pa 97.3 0.00076 1.6E-08 68.1 8.3 23 272-294 114-136 (318)
358 PF02492 cobW: CobW/HypB/UreG, 97.3 0.0001 2.2E-09 67.8 1.9 74 327-410 85-159 (178)
359 PRK10463 hydrogenase nickel in 97.3 6.4E-05 1.4E-09 74.8 0.4 28 268-295 100-127 (290)
360 TIGR02475 CobW cobalamin biosy 97.2 0.00047 1E-08 70.3 5.9 25 271-295 3-27 (341)
361 COG1162 Predicted GTPases [Gen 97.2 0.0003 6.6E-09 70.1 4.3 67 274-351 166-243 (301)
362 cd01859 MJ1464 MJ1464. This f 97.2 0.00066 1.4E-08 60.5 6.0 52 350-407 4-56 (156)
363 KOG1534 Putative transcription 97.2 0.00026 5.7E-09 67.2 3.3 77 326-407 97-179 (273)
364 KOG1533 Predicted GTPase [Gene 97.2 0.00049 1.1E-08 66.4 4.8 80 327-409 97-180 (290)
365 TIGR00064 ftsY signal recognit 97.1 0.0016 3.5E-08 64.3 8.4 73 327-407 155-232 (272)
366 KOG0464 Elongation factor G [T 97.1 7E-05 1.5E-09 76.9 -1.6 124 271-407 36-169 (753)
367 COG0523 Putative GTPases (G3E 97.1 0.0017 3.8E-08 65.7 8.0 71 327-409 85-162 (323)
368 TIGR00101 ureG urease accessor 97.1 0.0018 4E-08 60.9 7.6 23 273-295 2-24 (199)
369 KOG0096 GTPase Ran/TC4/GSP1 (n 97.0 0.0016 3.5E-08 60.8 6.8 119 271-408 9-130 (216)
370 KOG0460 Mitochondrial translat 97.0 0.0016 3.4E-08 65.9 7.2 127 273-420 55-206 (449)
371 PF00448 SRP54: SRP54-type pro 97.0 0.0004 8.7E-09 65.3 2.9 72 327-407 84-155 (196)
372 PRK11889 flhF flagellar biosyn 97.0 0.002 4.4E-08 66.9 8.1 70 327-407 321-392 (436)
373 cd01855 YqeH YqeH. YqeH is an 97.0 0.0015 3.2E-08 60.3 6.4 52 350-409 27-78 (190)
374 PRK14722 flhF flagellar biosyn 97.0 0.0015 3.2E-08 67.4 6.6 24 272-295 137-160 (374)
375 cd01856 YlqF YlqF. Proteins o 97.0 0.00093 2E-08 60.8 4.6 51 349-407 11-61 (171)
376 PRK11537 putative GTP-binding 96.9 0.00091 2E-08 67.6 4.7 70 327-408 91-166 (318)
377 KOG0469 Elongation factor 2 [T 96.9 0.00094 2E-08 70.3 4.3 124 269-405 16-163 (842)
378 TIGR03596 GTPase_YlqF ribosome 96.9 0.0012 2.7E-08 65.0 4.7 59 335-407 5-63 (276)
379 cd02038 FleN-like FleN is a me 96.8 0.0036 7.8E-08 55.2 7.1 105 278-405 6-110 (139)
380 PRK12724 flagellar biosynthesi 96.8 0.0015 3.2E-08 68.3 5.3 73 327-407 300-374 (432)
381 PRK12727 flagellar biosynthesi 96.8 0.0022 4.8E-08 68.8 6.4 23 272-294 350-372 (559)
382 PRK12726 flagellar biosynthesi 96.8 0.0023 5E-08 66.2 6.0 23 272-294 206-228 (407)
383 PRK05703 flhF flagellar biosyn 96.7 0.0029 6.2E-08 66.4 6.6 73 327-407 300-372 (424)
384 KOG1143 Predicted translation 96.7 0.0029 6.2E-08 64.7 6.2 125 274-409 169-320 (591)
385 cd01849 YlqF_related_GTPase Yl 96.7 0.0021 4.5E-08 57.5 4.7 45 359-408 1-45 (155)
386 PRK14723 flhF flagellar biosyn 96.7 0.0052 1.1E-07 68.6 8.5 73 327-407 264-338 (767)
387 PRK01889 GTPase RsgA; Reviewed 96.6 0.0014 2.9E-08 67.3 3.4 28 269-296 192-219 (356)
388 COG5258 GTPBP1 GTPase [General 96.6 0.0031 6.7E-08 64.7 5.9 126 272-410 117-273 (527)
389 COG3523 IcmF Type VI protein s 96.6 0.0032 7E-08 72.9 6.7 124 275-406 128-270 (1188)
390 cd00066 G-alpha G protein alph 96.6 0.0039 8.4E-08 62.9 6.6 73 327-406 161-242 (317)
391 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.0098 2.1E-07 47.1 7.2 72 275-372 2-73 (99)
392 PF00004 AAA: ATPase family as 96.6 0.0054 1.2E-07 52.0 6.0 21 275-295 1-21 (132)
393 smart00275 G_alpha G protein a 96.5 0.0063 1.4E-07 62.1 7.4 72 327-406 184-265 (342)
394 cd03111 CpaE_like This protein 96.5 0.015 3.2E-07 49.0 8.5 100 279-401 7-106 (106)
395 cd02036 MinD Bacterial cell di 96.5 0.026 5.6E-07 50.7 10.7 65 328-406 64-128 (179)
396 PRK14721 flhF flagellar biosyn 96.5 0.0044 9.6E-08 64.9 6.3 69 327-407 270-341 (420)
397 PRK09563 rbgA GTPase YlqF; Rev 96.5 0.0027 5.8E-08 63.0 4.3 61 333-407 6-66 (287)
398 COG0378 HypB Ni2+-binding GTPa 96.5 0.0019 4.1E-08 60.7 2.8 24 272-295 13-36 (202)
399 cd04178 Nucleostemin_like Nucl 96.4 0.0033 7.2E-08 57.9 4.2 47 359-409 1-47 (172)
400 PRK06731 flhF flagellar biosyn 96.4 0.0072 1.6E-07 59.8 6.6 69 327-407 155-226 (270)
401 COG1419 FlhF Flagellar GTP-bin 96.4 0.0092 2E-07 61.9 7.4 128 272-408 203-354 (407)
402 PRK00771 signal recognition pa 96.4 0.0098 2.1E-07 62.7 7.7 69 327-406 176-246 (437)
403 PRK14974 cell division protein 96.3 0.013 2.9E-07 59.6 8.4 71 327-407 223-294 (336)
404 TIGR00157 ribosome small subun 96.3 0.0099 2.1E-07 57.7 7.1 50 354-408 33-83 (245)
405 TIGR03263 guanyl_kin guanylate 96.3 0.0059 1.3E-07 55.5 5.2 41 274-314 3-44 (180)
406 KOG3887 Predicted small GTPase 96.3 0.0083 1.8E-07 58.3 6.2 122 273-408 28-151 (347)
407 PRK12723 flagellar biosynthesi 96.3 0.009 2E-07 62.0 7.0 73 327-407 255-327 (388)
408 cd03110 Fer4_NifH_child This p 96.3 0.025 5.4E-07 51.5 9.0 78 327-419 93-172 (179)
409 smart00010 small_GTPase Small 96.2 0.016 3.4E-07 48.5 6.6 22 274-295 2-23 (124)
410 PRK06995 flhF flagellar biosyn 96.1 0.009 1.9E-07 63.7 6.0 123 273-407 257-406 (484)
411 cd02042 ParA ParA and ParB of 96.1 0.019 4E-07 47.5 6.7 71 275-369 2-73 (104)
412 cd00071 GMPK Guanosine monopho 96.0 0.0091 2E-07 52.7 4.5 40 275-314 2-43 (137)
413 KOG3859 Septins (P-loop GTPase 96.0 0.013 2.8E-07 58.0 5.9 126 272-409 42-193 (406)
414 KOG0466 Translation initiation 96.0 0.004 8.8E-08 62.2 2.4 76 328-414 126-201 (466)
415 cd01854 YjeQ_engC YjeQ/EngC. 96.0 0.012 2.6E-07 58.5 5.7 48 355-407 76-124 (287)
416 PRK12289 GTPase RsgA; Reviewed 95.9 0.014 3.1E-07 59.8 6.2 50 354-408 86-136 (352)
417 PRK00098 GTPase RsgA; Reviewed 95.9 0.014 3E-07 58.3 5.9 48 355-407 78-126 (298)
418 KOG2484 GTPase [General functi 95.9 0.012 2.7E-07 60.5 5.5 60 347-410 136-195 (435)
419 PRK14737 gmk guanylate kinase; 95.8 0.0088 1.9E-07 55.7 3.9 44 274-317 6-50 (186)
420 PRK10867 signal recognition pa 95.7 0.024 5.1E-07 59.8 6.8 21 273-293 101-121 (433)
421 PRK13695 putative NTPase; Prov 95.6 0.058 1.2E-06 49.1 8.4 23 273-295 1-23 (174)
422 KOG4423 GTP-binding protein-li 95.5 0.00092 2E-08 62.3 -4.0 122 272-407 25-150 (229)
423 KOG3905 Dynein light intermedi 95.4 0.028 6.1E-07 56.8 5.7 28 269-296 49-76 (473)
424 TIGR00959 ffh signal recogniti 95.3 0.047 1E-06 57.5 7.6 68 327-405 183-252 (428)
425 cd00009 AAA The AAA+ (ATPases 95.3 0.072 1.6E-06 44.8 7.4 24 273-296 20-43 (151)
426 PRK00300 gmk guanylate kinase; 95.2 0.024 5.2E-07 52.7 4.4 41 274-314 7-48 (205)
427 COG0194 Gmk Guanylate kinase [ 95.2 0.012 2.6E-07 55.1 2.3 43 274-317 6-49 (191)
428 KOG1424 Predicted GTP-binding 95.2 0.02 4.2E-07 60.8 4.1 63 344-411 161-224 (562)
429 PRK13796 GTPase YqeH; Provisio 94.8 0.056 1.2E-06 55.6 6.3 49 351-407 62-111 (365)
430 KOG0446 Vacuolar sorting prote 94.8 0.02 4.3E-07 63.3 2.9 76 328-407 133-214 (657)
431 PF00005 ABC_tran: ABC transpo 94.8 0.0086 1.9E-07 51.7 0.1 29 268-296 7-35 (137)
432 PRK14738 gmk guanylate kinase; 94.7 0.03 6.5E-07 52.8 3.7 42 274-315 15-57 (206)
433 PF13207 AAA_17: AAA domain; P 94.4 0.022 4.8E-07 48.0 1.8 22 274-295 1-22 (121)
434 cd01130 VirB11-like_ATPase Typ 94.3 0.034 7.3E-07 51.4 3.0 32 265-296 18-49 (186)
435 KOG0463 GTP-binding protein GP 94.3 0.027 5.9E-07 57.8 2.5 125 273-408 134-289 (641)
436 COG1134 TagH ABC-type polysacc 94.0 0.022 4.8E-07 55.4 1.1 32 265-296 46-77 (249)
437 TIGR03597 GTPase_YqeH ribosome 94.0 0.076 1.7E-06 54.5 5.1 46 355-408 61-106 (360)
438 PF05621 TniB: Bacterial TniB 93.9 0.24 5.2E-06 49.8 8.2 110 271-401 60-189 (302)
439 KOG0066 eIF2-interacting prote 93.8 0.23 5E-06 52.3 8.2 26 270-295 611-636 (807)
440 KOG4181 Uncharacterized conser 93.7 0.23 5E-06 50.7 7.8 27 271-297 187-213 (491)
441 COG1116 TauB ABC-type nitrate/ 93.7 0.038 8.2E-07 53.9 2.2 23 274-296 31-53 (248)
442 cd03264 ABC_drug_resistance_li 93.7 0.025 5.5E-07 52.9 0.9 29 267-296 21-49 (211)
443 PF00625 Guanylate_kin: Guanyl 93.6 0.036 7.8E-07 50.9 1.7 42 275-316 5-48 (183)
444 PF09547 Spore_IV_A: Stage IV 93.6 0.32 7E-06 51.1 8.7 21 274-294 19-39 (492)
445 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.5 0.031 6.7E-07 52.5 1.1 29 268-296 26-54 (218)
446 cd03261 ABC_Org_Solvent_Resist 93.4 0.031 6.7E-07 53.3 1.1 29 268-296 22-50 (235)
447 TIGR02673 FtsE cell division A 93.4 0.033 7.2E-07 52.1 1.2 30 267-296 23-52 (214)
448 TIGR03608 L_ocin_972_ABC putat 93.4 0.032 7E-07 51.8 1.1 29 268-296 20-48 (206)
449 TIGR00960 3a0501s02 Type II (G 93.4 0.032 7E-07 52.4 1.1 29 268-296 25-53 (216)
450 PF13555 AAA_29: P-loop contai 93.4 0.055 1.2E-06 41.8 2.2 21 274-294 25-45 (62)
451 COG4559 ABC-type hemin transpo 93.4 0.04 8.6E-07 53.0 1.6 29 268-296 23-51 (259)
452 cd03225 ABC_cobalt_CbiO_domain 93.4 0.033 7.1E-07 52.0 1.1 28 269-296 24-51 (211)
453 PF13521 AAA_28: AAA domain; P 93.3 0.037 8.1E-07 49.7 1.3 22 274-295 1-22 (163)
454 cd03257 ABC_NikE_OppD_transpor 93.3 0.036 7.9E-07 52.2 1.3 30 267-296 26-55 (228)
455 PRK12288 GTPase RsgA; Reviewed 93.3 0.18 4E-06 51.6 6.5 49 355-408 118-166 (347)
456 KOG2423 Nucleolar GTPase [Gene 93.3 0.14 2.9E-06 53.2 5.4 57 348-408 204-260 (572)
457 cd02019 NK Nucleoside/nucleoti 93.3 0.054 1.2E-06 42.1 2.0 21 275-295 2-22 (69)
458 PF13671 AAA_33: AAA domain; P 93.3 0.046 9.9E-07 47.4 1.8 22 275-296 2-23 (143)
459 cd03259 ABC_Carb_Solutes_like 93.3 0.037 8E-07 51.9 1.3 30 267-296 21-50 (213)
460 PRK07261 topology modulation p 93.3 0.052 1.1E-06 49.7 2.2 22 274-295 2-23 (171)
461 PF00503 G-alpha: G-protein al 93.3 0.063 1.4E-06 55.5 3.1 70 328-405 237-316 (389)
462 KOG0780 Signal recognition par 93.3 0.074 1.6E-06 55.0 3.4 100 270-372 99-228 (483)
463 cd03265 ABC_DrrA DrrA is the A 93.3 0.036 7.8E-07 52.2 1.2 29 268-296 22-50 (220)
464 TIGR01166 cbiO cobalt transpor 93.2 0.036 7.8E-07 51.0 1.1 27 270-296 16-42 (190)
465 cd03218 ABC_YhbG The ABC trans 93.2 0.04 8.6E-07 52.3 1.4 29 268-296 22-50 (232)
466 cd03226 ABC_cobalt_CbiO_domain 93.2 0.036 7.9E-07 51.6 1.1 29 268-296 22-50 (205)
467 COG3840 ThiQ ABC-type thiamine 93.2 0.054 1.2E-06 51.0 2.1 23 274-296 27-49 (231)
468 COG1136 SalX ABC-type antimicr 93.2 0.039 8.4E-07 53.3 1.3 30 267-296 26-55 (226)
469 KOG0082 G-protein alpha subuni 93.1 0.14 3E-06 52.5 5.3 73 327-406 195-276 (354)
470 cd03224 ABC_TM1139_LivF_branch 93.1 0.038 8.3E-07 51.9 1.1 29 268-296 22-50 (222)
471 TIGR01978 sufC FeS assembly AT 93.1 0.042 9.2E-07 52.4 1.4 29 267-295 21-49 (243)
472 cd03301 ABC_MalK_N The N-termi 93.1 0.039 8.5E-07 51.6 1.1 29 268-296 22-50 (213)
473 cd03269 ABC_putative_ATPase Th 93.0 0.039 8.5E-07 51.5 1.1 29 268-296 22-50 (210)
474 cd03262 ABC_HisP_GlnQ_permease 93.0 0.043 9.2E-07 51.3 1.3 28 269-296 23-50 (213)
475 cd03263 ABC_subfamily_A The AB 93.0 0.039 8.5E-07 51.9 1.1 29 268-296 24-52 (220)
476 TIGR02315 ABC_phnC phosphonate 93.0 0.043 9.4E-07 52.4 1.3 30 267-296 23-52 (243)
477 TIGR02211 LolD_lipo_ex lipopro 93.0 0.041 9E-07 51.7 1.1 29 268-296 27-55 (221)
478 cd03293 ABC_NrtD_SsuB_transpor 93.0 0.04 8.7E-07 51.9 1.0 30 267-296 25-54 (220)
479 PRK01889 GTPase RsgA; Reviewed 93.0 0.22 4.8E-06 51.1 6.5 48 355-407 110-157 (356)
480 cd03238 ABC_UvrA The excision 92.9 0.04 8.8E-07 50.9 1.0 27 268-294 17-43 (176)
481 cd03266 ABC_NatA_sodium_export 92.9 0.042 9.1E-07 51.6 1.1 29 268-296 27-55 (218)
482 cd03292 ABC_FtsE_transporter F 92.9 0.042 9E-07 51.4 1.0 29 268-296 23-51 (214)
483 cd03219 ABC_Mj1267_LivG_branch 92.9 0.044 9.6E-07 52.1 1.2 29 268-296 22-50 (236)
484 PRK08118 topology modulation p 92.9 0.064 1.4E-06 49.0 2.2 23 273-295 2-24 (167)
485 cd03229 ABC_Class3 This class 92.9 0.043 9.3E-07 50.2 1.1 30 267-296 21-50 (178)
486 cd03221 ABCF_EF-3 ABCF_EF-3 E 92.9 0.041 8.8E-07 48.8 0.9 29 268-296 22-50 (144)
487 cd03235 ABC_Metallic_Cations A 92.9 0.046 9.9E-07 51.2 1.3 30 267-296 20-49 (213)
488 cd03216 ABC_Carb_Monos_I This 92.9 0.043 9.4E-07 49.6 1.0 30 267-296 21-50 (163)
489 PF03205 MobB: Molybdopterin g 92.8 0.058 1.3E-06 48.0 1.8 22 274-295 2-23 (140)
490 cd03260 ABC_PstB_phosphate_tra 92.8 0.042 9.2E-07 52.0 1.0 29 268-296 22-50 (227)
491 TIGR02323 CP_lyasePhnK phospho 92.8 0.047 1E-06 52.6 1.3 31 267-297 24-54 (253)
492 cd03258 ABC_MetN_methionine_tr 92.8 0.047 1E-06 51.9 1.2 30 268-297 27-56 (233)
493 PRK13541 cytochrome c biogenes 92.8 0.043 9.3E-07 50.9 0.9 29 268-296 22-50 (195)
494 TIGR01189 ccmA heme ABC export 92.8 0.047 1E-06 50.6 1.2 29 268-296 22-50 (198)
495 PRK13540 cytochrome c biogenes 92.7 0.047 1E-06 50.8 1.2 30 267-296 22-51 (200)
496 smart00382 AAA ATPases associa 92.7 0.078 1.7E-06 43.9 2.4 23 274-296 4-26 (148)
497 PRK14242 phosphate transporter 92.7 0.045 9.9E-07 52.7 1.0 28 268-295 28-55 (253)
498 cd03222 ABC_RNaseL_inhibitor T 92.7 0.053 1.2E-06 50.2 1.4 27 270-296 23-49 (177)
499 PRK14247 phosphate ABC transpo 92.7 0.051 1.1E-06 52.3 1.3 30 267-296 24-53 (250)
500 COG0563 Adk Adenylate kinase a 92.6 0.07 1.5E-06 49.5 2.2 22 274-295 2-23 (178)
No 1
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=3.4e-84 Score=635.66 Aligned_cols=293 Identities=48% Similarity=0.782 Sum_probs=273.3
Q ss_pred CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhh
Q 014655 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (421)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~ 153 (421)
++|+|+++|+|+||+||||||| |||||| +++|||||| |||+||||||+||++++||.+
T Consensus 1 m~FvD~~~I~v~aG~GGnG~VS--------------FrREK~----vp~GGPdGG----dGG~GGsV~~~ad~~l~TL~d 58 (369)
T COG0536 1 MKFVDEVKIEVKAGDGGNGCVS--------------FRREKF----VPKGGPDGG----DGGRGGSVIFEADENLNTLID 58 (369)
T ss_pred CCcceEEEEEEEecCCCCeeEE--------------EEhhhc----CccCCCCCC----CCCCCceEEEEEcCCcccHhh
Confidence 5899999999999999999997 788988 689999998 999999999999999999999
Q ss_pred ccccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEecc-CceeeccCCCCceEEEecCCCCCCCCCCcch
Q 014655 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKR-GKLFSDLAHPGDEVLVARGGRGGISLLEVPE 232 (421)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~~~-~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~ 232 (421)
|+++++|+|++|+||. +++++|++|+|++|+||+||+|+|.+ +++++||++++|++++|+||+||+||.+|++
T Consensus 59 ~r~~~~f~A~~G~~G~------~~~~~G~~G~Dl~i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks 132 (369)
T COG0536 59 FRYKKHFKAENGENGM------GRNRTGAKGKDLVIKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKS 132 (369)
T ss_pred hccceEEEccCCCCCC------CCCCCCCCCCceEEEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcC
Confidence 9999999999999986 47899999999999999999999975 8999999999999999999999999998765
Q ss_pred hhhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce
Q 014655 233 NRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 312 (421)
Q Consensus 233 ~~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g 312 (421)
+ .+++|++++.|++||++.+.||||.+++|+|||+|||||||||+++++++|+|++|||||+.|++|
T Consensus 133 ~-------------~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLG 199 (369)
T COG0536 133 S-------------VNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLG 199 (369)
T ss_pred c-------------ccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCccc
Confidence 3 246788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCC---CChhhHHHHHHHHHhcCCC
Q 014655 313 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPD 389 (421)
Q Consensus 313 ~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~---~~~~~~~~l~~eL~~~~~~ 389 (421)
++.... ..+++++|+||+||+||++.||+..||+||+||.+++||||++.. +|.++++.|+.||+.|++.
T Consensus 200 vV~~~~-------~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~ 272 (369)
T COG0536 200 VVRVDG-------GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPK 272 (369)
T ss_pred EEEecC-------CCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHH
Confidence 998632 357999999999999999999999999999999999999999864 4699999999999999999
Q ss_pred CCCCCEEEEEeCCCCCCCCCchHHH
Q 014655 390 YLERPFIVVLNKIDLPEMYDDSSSR 414 (421)
Q Consensus 390 l~~kP~IIVlNK~Dl~~~~e~~~~l 414 (421)
+.++|.+||+||+|++.+++.++.+
T Consensus 273 L~~K~~ivv~NKiD~~~~~e~~~~~ 297 (369)
T COG0536 273 LAEKPRIVVLNKIDLPLDEEELEEL 297 (369)
T ss_pred hccCceEEEEeccCCCcCHHHHHHH
Confidence 9999999999999987776655433
No 2
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.7e-74 Score=580.68 Aligned_cols=287 Identities=46% Similarity=0.769 Sum_probs=265.4
Q ss_pred CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhc
Q 014655 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (421)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~ 154 (421)
+|+|+++|+|+||+|||||+| |+|||| +++|||||| |||+||||||+||++++||++|
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~--------------f~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~ 58 (335)
T PRK12299 1 KFIDEAKIYVKAGDGGNGCVS--------------FRREKF----IPFGGPDGG----DGGRGGSVILEADENLNTLIDF 58 (335)
T ss_pred CceEEEEEEEEecCCCCceee--------------Eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhh
Confidence 599999999999999999997 778887 688999998 9999999999999999999999
Q ss_pred cccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN 233 (421)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~ 233 (421)
+++++|+|++|+||. +++++|++|+|++|+||+||+|++ +++++++||.+++|+++|||||+||+||.+|.++
T Consensus 59 ~~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~ 132 (335)
T PRK12299 59 RYKRHFKAENGENGM------GRNRTGKSGKDLVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSS 132 (335)
T ss_pred cCccEEECCCCCCCC------CCCCCCCCCCceEEEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCcCCchhhccc
Confidence 999999999999986 477899999999999999999998 5689999999999999999999999999887543
Q ss_pred hhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee
Q 014655 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 313 (421)
Q Consensus 234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~ 313 (421)
.+++|++++.|++||++.++||||.+++|+|||+||||||||||+|+++++.+++|||||+.|+++.
T Consensus 133 -------------~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~ 199 (335)
T PRK12299 133 -------------TNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV 199 (335)
T ss_pred -------------cCCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE
Confidence 2356889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCC
Q 014655 314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER 393 (421)
Q Consensus 314 v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k 393 (421)
+.... ..+++++||||+++++++..+++..|++|+++|++++||+|+++.++.++++.|.++|..|.+.+.++
T Consensus 200 v~~~~-------~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~k 272 (335)
T PRK12299 200 VRVDD-------YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADK 272 (335)
T ss_pred EEeCC-------CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccC
Confidence 87632 24799999999999999999999999999999999999999998778899999999999998777789
Q ss_pred CEEEEEeCCCCCCCCC
Q 014655 394 PFIVVLNKIDLPEMYD 409 (421)
Q Consensus 394 P~IIVlNK~Dl~~~~e 409 (421)
|+++|+||+|+.+..+
T Consensus 273 p~IIV~NKiDL~~~~~ 288 (335)
T PRK12299 273 PRILVLNKIDLLDEEE 288 (335)
T ss_pred CeEEEEECcccCCchh
Confidence 9999999999976543
No 3
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=2.7e-73 Score=586.32 Aligned_cols=290 Identities=48% Similarity=0.806 Sum_probs=265.3
Q ss_pred CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhc
Q 014655 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (421)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~ 154 (421)
+|+|+++|+|+||+|||||+| |+|||| +++|||||| |||+||||||+||++++||++|
T Consensus 1 ~f~D~~~i~v~aG~GG~G~~s--------------f~rek~----~~~ggp~gG----~GG~GG~v~~~~~~~~~tl~~~ 58 (424)
T PRK12297 1 MFIDQAKIYVKAGDGGDGMVS--------------FRREKY----VPKGGPDGG----DGGKGGSVIFVADEGLRTLLDF 58 (424)
T ss_pred CceEEEEEEEEecCCCCceee--------------EEhhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhh
Confidence 499999999999999999997 778887 688999998 9999999999999999999999
Q ss_pred cccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN 233 (421)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~ 233 (421)
+++++|+|++|+||+ +++++|++|+|++|+||+||+|++ +++++++||.+++|+++|||||+||+||.+|..+
T Consensus 59 ~~~~~~~a~~G~~g~------~~~~~G~~g~d~~i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s 132 (424)
T PRK12297 59 RYKRHFKAENGENGM------GKNMHGRNGEDLIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGGRGNAHFATS 132 (424)
T ss_pred cCccEEEcCCCCCCC------CCCCCCCCCCeeEEecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCCcCchhhcCC
Confidence 999999999999986 377899999999999999999998 5789999999999999999999999999887653
Q ss_pred hhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee
Q 014655 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 313 (421)
Q Consensus 234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~ 313 (421)
. +++|++++.|++||++.++||||.+++|+|||+||||||||||+|+++++++++|||||+.|+++.
T Consensus 133 ~-------------~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~ 199 (424)
T PRK12297 133 T-------------NQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV 199 (424)
T ss_pred C-------------CCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE
Confidence 2 356788999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCC---CChhhHHHHHHHHHhcCCCC
Q 014655 314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDY 390 (421)
Q Consensus 314 v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~---~~~~~~~~l~~eL~~~~~~l 390 (421)
+.... ..+++++||||+++++++..+++..|++|+++|+++|||+|+++. ++.+++..|.++|..|.+.+
T Consensus 200 v~~~~-------~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L 272 (424)
T PRK12297 200 VETDD-------GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRL 272 (424)
T ss_pred EEEeC-------CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhc
Confidence 86542 247999999999999999999999999999999999999999864 67888899999999998877
Q ss_pred CCCCEEEEEeCCCCCCCCCchH
Q 014655 391 LERPFIVVLNKIDLPEMYDDSS 412 (421)
Q Consensus 391 ~~kP~IIVlNK~Dl~~~~e~~~ 412 (421)
.++|++||+||+|+....+.++
T Consensus 273 ~~kP~IVV~NK~DL~~~~e~l~ 294 (424)
T PRK12297 273 LERPQIVVANKMDLPEAEENLE 294 (424)
T ss_pred cCCcEEEEEeCCCCcCCHHHHH
Confidence 8999999999999865443333
No 4
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=3.5e-73 Score=593.13 Aligned_cols=288 Identities=45% Similarity=0.748 Sum_probs=264.7
Q ss_pred CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhh
Q 014655 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (421)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~ 153 (421)
++|||+++|+|+||+|||||+| |+|||| +++|||||| |||+||||||++|++++||++
T Consensus 2 ~~fvD~~~i~v~aG~GG~G~~s--------------f~rek~----~~~ggpdGG----~GG~GG~v~~~~~~~~~tl~~ 59 (500)
T PRK12296 2 PRFVDRVVLHVKAGDGGNGCAS--------------VHREKF----KPLGGPDGG----NGGRGGSVVLVVDPQVTTLLD 59 (500)
T ss_pred CCcEEEEEEEEEecCCCCccee--------------eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcCchHH
Confidence 4699999999999999999997 678887 689999998 999999999999999999999
Q ss_pred ccccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEeccCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHKRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN 233 (421)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~ 233 (421)
|+++++|+|++|+||. +++++|++|+|++|+||+||+|++.++++|+||.++|++++||+||+||+||.+|+++
T Consensus 60 ~~~~~~~~a~~G~~G~------~~~~~G~~g~d~~i~VP~Gt~v~~~~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~ 133 (500)
T PRK12296 60 FHFRPHRKATNGKPGM------GDNRDGAAGEDLVLPVPDGTVVLDEDGEVLADLVGAGTRFVAAAGGRGGLGNAALASK 133 (500)
T ss_pred hccCceEECCCCCCCC------CCCCCCCCCCceEEecCCCcEEEcCCCcEEeeeccCCCEEEEEccCCCcCCCcccCCc
Confidence 9999999999999986 3689999999999999999999999999999999999999999999999999988664
Q ss_pred hhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee
Q 014655 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 313 (421)
Q Consensus 234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~ 313 (421)
. +++|++++.|++||++.+.||||.+++|+|||+||||||||||+|+++++.+++|||||+.|++++
T Consensus 134 ~-------------~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv 200 (500)
T PRK12296 134 A-------------RKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV 200 (500)
T ss_pred c-------------CCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE
Confidence 3 356889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCC----CCChhhHHHHHHHHHhcCC-
Q 014655 314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----ENPVNDYRTVKEELRMYNP- 388 (421)
Q Consensus 314 v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~----~~~~~~~~~l~~eL~~~~~- 388 (421)
+.... .+++|+||||+++++++.++++..|++|+++||+||||||+++ .++.+++..+.++|..|..
T Consensus 201 v~~~~--------~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~ 272 (500)
T PRK12296 201 VQAGD--------TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPA 272 (500)
T ss_pred EEECC--------eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhc
Confidence 87642 4799999999999999999999999999999999999999975 3577888889999998875
Q ss_pred --------CCCCCCEEEEEeCCCCCCCCCc
Q 014655 389 --------DYLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 389 --------~l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
.+.++|+|||+||+|+++..+.
T Consensus 273 l~~~~~~~~l~~kP~IVVlNKiDL~da~el 302 (500)
T PRK12296 273 LDGDLGLGDLAERPRLVVLNKIDVPDAREL 302 (500)
T ss_pred ccccchhhhhcCCCEEEEEECccchhhHHH
Confidence 4567999999999999865543
No 5
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=100.00 E-value=1.9e-72 Score=564.88 Aligned_cols=286 Identities=47% Similarity=0.793 Sum_probs=263.5
Q ss_pred ceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhcc
Q 014655 76 YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFH 155 (421)
Q Consensus 76 f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~~ 155 (421)
|+|+++|+|+||+|||||+| |+|||| ++++||||| |||+||||||+||++++||++++
T Consensus 1 f~D~~~i~~~~g~gg~g~~~--------------f~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~~ 58 (329)
T TIGR02729 1 FVDEAKIFVKAGDGGNGCVS--------------FRREKY----VPKGGPDGG----DGGRGGSVILEADENLNTLLDFR 58 (329)
T ss_pred CeEEEEEEEEecCCCCceee--------------EEeecc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhhcc
Confidence 89999999999999999997 778887 688999998 99999999999999999999999
Q ss_pred ccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEec-cCceeeccCCCCceEEEecCCCCCCCCCCcchhh
Q 014655 156 NKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKHK-RGKLFSDLAHPGDEVLVARGGRGGISLLEVPENR 234 (421)
Q Consensus 156 ~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~~-~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~~ 234 (421)
++++|+|++|+||. +++++|++|+|++|+||+||+|++. ++++++||.+++|+++|||||+||+||.+|..+
T Consensus 59 ~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~- 131 (329)
T TIGR02729 59 YQRHFKAENGENGM------GKNRTGKNGEDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGGLGNAHFKSS- 131 (329)
T ss_pred CCcEEEcCCCCCCC------CCCCCCCCCCceEEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCCCCcccccCc-
Confidence 99999999999986 4788999999999999999999985 689999999999999999999999999887653
Q ss_pred hhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceee
Q 014655 235 RKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRL 314 (421)
Q Consensus 235 r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v 314 (421)
.+++|+.++.|++||++.++||||.+++|+|||+||||||||||+|+++++.+++|||||+.|+++.+
T Consensus 132 ------------~~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v 199 (329)
T TIGR02729 132 ------------TNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVV 199 (329)
T ss_pred ------------cCCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEE
Confidence 23567889999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCC---CChhhHHHHHHHHHhcCCCCC
Q 014655 315 DGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYL 391 (421)
Q Consensus 315 ~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~---~~~~~~~~l~~eL~~~~~~l~ 391 (421)
.... ..+++++||||+++.+++.++++..|++|+++||++|||+|+++. ++.+++..|.++|..|.+.+.
T Consensus 200 ~~~~-------~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~ 272 (329)
T TIGR02729 200 RVDD-------GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELA 272 (329)
T ss_pred EeCC-------ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhc
Confidence 7642 147999999999999999999999999999999999999999876 678889999999999887777
Q ss_pred CCCEEEEEeCCCCCCCCC
Q 014655 392 ERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 392 ~kP~IIVlNK~Dl~~~~e 409 (421)
++|++||+||+|+....+
T Consensus 273 ~kp~IIV~NK~DL~~~~~ 290 (329)
T TIGR02729 273 EKPRIVVLNKIDLLDEEE 290 (329)
T ss_pred cCCEEEEEeCccCCChHH
Confidence 899999999999976543
No 6
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=2.3e-72 Score=575.40 Aligned_cols=289 Identities=43% Similarity=0.706 Sum_probs=263.6
Q ss_pred CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhh
Q 014655 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (421)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~ 153 (421)
++|+|+++|+|+||+|||||+| |+|||| +++|||||| |||+||||||+||++++||++
T Consensus 1 ~~f~D~~~i~~~~G~GG~g~~~--------------f~r~~~----~~~ggp~gg----~GG~Gg~v~~~~~~~~~~l~~ 58 (390)
T PRK12298 1 MKFVDEAKIRVVAGDGGNGCVS--------------FRREKY----IPKGGPDGG----DGGDGGDVYLEADENLNTLID 58 (390)
T ss_pred CCceEEEEEEEEecCCCCceee--------------Eehhhc----ccCCCCCCC----CCCCCCEEEEEECCCcChhhh
Confidence 4699999999999999999997 778887 688999998 999999999999999999999
Q ss_pred ccccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcch
Q 014655 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPE 232 (421)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~ 232 (421)
|+++++|+|++|+||. +++++|++|+|++|+||+||+|++ +++++++||.+++|+++|||||+||+||.+|..
T Consensus 59 ~~~~~~~~a~~G~~g~------~~~~~g~~g~d~~i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~ 132 (390)
T PRK12298 59 YRFERHFRAERGQNGQ------GRDCTGKRGKDITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKS 132 (390)
T ss_pred hcCCceEEcCCCCCCC------CCCCCCCCCCceEEEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCccchhhhcc
Confidence 9999999999999986 478999999999999999999997 678999999999999999999999999987754
Q ss_pred hhhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce
Q 014655 233 NRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 312 (421)
Q Consensus 233 ~~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g 312 (421)
+ + +++|+.++.|++||++.++||||.+++|+|||+||||||||||+|+++++.+++|||||+.|+.|
T Consensus 133 ~---------~----~~~p~~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G 199 (390)
T PRK12298 133 S---------V----NRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG 199 (390)
T ss_pred C---------c----cCCCcccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE
Confidence 3 2 25678899999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCC---CCCChhhHHHHHHHHHhcCCC
Q 014655 313 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA---AENPVNDYRTVKEELRMYNPD 389 (421)
Q Consensus 313 ~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s---~~~~~~~~~~l~~eL~~~~~~ 389 (421)
++.... ..+++++||||+++.++++.+++..|++|+++||+++||+|++ ..++.+++..+.++|..|...
T Consensus 200 iv~~~~-------~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~ 272 (390)
T PRK12298 200 VVRVDD-------ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPK 272 (390)
T ss_pred EEEeCC-------CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhh
Confidence 987642 1359999999999999998999999999999999999999998 456778888899999998877
Q ss_pred CCCCCEEEEEeCCCCCCCCCc
Q 014655 390 YLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 390 l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
+..+|+|+|+||+|+....+.
T Consensus 273 L~~kP~IlVlNKiDl~~~~el 293 (390)
T PRK12298 273 LAEKPRWLVFNKIDLLDEEEA 293 (390)
T ss_pred hcCCCEEEEEeCCccCChHHH
Confidence 778999999999999765443
No 7
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=9.2e-71 Score=535.16 Aligned_cols=303 Identities=41% Similarity=0.628 Sum_probs=272.9
Q ss_pred CCCCCCCCCCCCCCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEE
Q 014655 62 NSTSPATLVKEPHKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVV 141 (421)
Q Consensus 62 ~~~~~~~~~~~~~~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~ 141 (421)
.+....++.+....|+|..+|.+++|+||+||+||++.++ .+.++|||| +||+||+||
T Consensus 27 ~~k~~~s~~~~sq~fiD~~rv~~kgG~GG~G~ssf~~~~~------------------~~~g~PdGG----dGG~GG~V~ 84 (366)
T KOG1489|consen 27 FPKKLKSEHKASQNFIDKRRVRIKGGSGGSGASSFFRGYR------------------RPRGGPDGG----DGGNGGHVY 84 (366)
T ss_pred ccccchhhhhhhhhhheeeeEEeeccCCCCccchhhhhcc------------------cccCCCCCC----CCCCCceEE
Confidence 3455577777788999999999999999999999876533 245789998 999999999
Q ss_pred EEec-CCccchhhccccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEec
Q 014655 142 IYAD-EGKDTLLEFHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVAR 219 (421)
Q Consensus 142 ~~~~-~~~~~L~~~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~ 219 (421)
++|. ...++|. +..++++|++|++++ +.+++|.+|++.+|+||+||+|+| +.+.++++|+++++++++||
T Consensus 85 ~~a~~~~~~~l~--~~~s~~~a~~Ge~~~------s~~~~g~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~ar 156 (366)
T KOG1489|consen 85 FVAKPGAFKQLS--HVGSLIQAPNGENGK------SKMCHGSNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAAR 156 (366)
T ss_pred EEeCcccccccc--cCCceEEccCCCcCc------cccccCCCcceEEEecCCccEEeecccchhHHHhccCCcEEEEee
Confidence 9999 7777787 446899999999985 578999999999999999999998 77899999999999999999
Q ss_pred CCCCCCCCCCcchhhhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCc
Q 014655 220 GGRGGISLLEVPENRRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI 299 (421)
Q Consensus 220 GG~GG~gn~~~~~~~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i 299 (421)
||.||+||.+|... .+..|.+++.|..|+++.++||||.+++|+|||+||||||||||+|++++|+|
T Consensus 157 GG~GG~gn~~fls~-------------~~r~p~~~~~G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkV 223 (366)
T KOG1489|consen 157 GGEGGKGNKFFLSN-------------ENRSPKFSKPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKV 223 (366)
T ss_pred cCCCCccceeeccc-------------cccCcccccCCCCCceEEEEEEeeeecccceecCCCCcHHHHHHHhhccCCcc
Confidence 99999999876431 23457889999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCC---CChhhH
Q 014655 300 ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDY 376 (421)
Q Consensus 300 a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~---~~~~~~ 376 (421)
++|+|||+.|++|++.++.. .+++++|+||+|++||+++|++..||+|||||+.++||+|++.. .+++++
T Consensus 224 a~YaFTTL~P~iG~v~yddf-------~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~ 296 (366)
T KOG1489|consen 224 AHYAFTTLRPHIGTVNYDDF-------SQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQL 296 (366)
T ss_pred cccceeeeccccceeecccc-------ceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHH
Confidence 99999999999999988753 35999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch-HHH
Q 014655 377 RTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS-SSR 414 (421)
Q Consensus 377 ~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~-~~l 414 (421)
+.|+.||+.|...+.++|.+||+||+|++++++.+ +.|
T Consensus 297 ~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L 335 (366)
T KOG1489|consen 297 QLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSL 335 (366)
T ss_pred HHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHH
Confidence 99999999999999999999999999997665543 444
No 8
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=100.00 E-value=7.7e-44 Score=321.46 Aligned_cols=155 Identities=42% Similarity=0.679 Sum_probs=84.1
Q ss_pred ceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhcc
Q 014655 76 YFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEFH 155 (421)
Q Consensus 76 f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~~ 155 (421)
|||+++|+|+||+|||||+| |+||+| .++++|||| +||+||||||+||++++||++++
T Consensus 1 FvD~~~i~v~~G~GG~G~~s--------------f~r~~~----~~~ggp~GG----~GG~GG~V~l~~~~~~~sL~~~~ 58 (156)
T PF01018_consen 1 FVDRVRIKVRGGNGGNGCVS--------------FRREKY----VPKGGPDGG----NGGNGGDVYLVADENVNSLLDLK 58 (156)
T ss_dssp EECEEEEEEE------------------------EEEETT----CCEEEE--------------EEEEE-TT--SSCCCG
T ss_pred CeEEEEEEEEecCCcCCEEe--------------EEeecc----ccCCCCCCC----CCCCCceeEEEecccccchhhcc
Confidence 89999999999999999997 667776 577899998 99999999999999999999999
Q ss_pred ccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcchhh
Q 014655 156 NKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPENR 234 (421)
Q Consensus 156 ~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~~ 234 (421)
..++|+|++|+||. +++++|++|+|++|+||+||+|++ +++++++||++++++++|||||.||.||.+|.++
T Consensus 59 ~~~~~~A~~G~~G~------~~~~~G~~G~dl~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG~GN~~f~s~- 131 (156)
T PF01018_consen 59 NKKHYKAENGENGK------SRNCHGKNGKDLIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGGLGNAHFKSS- 131 (156)
T ss_dssp TSSEEE-------B------TTTB-------EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE--------GGGC-BT-
T ss_pred eeeeEEcCCCCCCC------CCcccccCCCccEeeecCCcEEEeeccccchheeecccceeEEecCCCCccccccccCC-
Confidence 98999999999985 578899999999999999999999 6789999999999999999999999999877543
Q ss_pred hhccccccccccccchhHHHhcCCCccchhhhHHhhh
Q 014655 235 RKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRV 271 (421)
Q Consensus 235 r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~ 271 (421)
.+++|++++.|++||++.++||||+
T Consensus 132 ------------~~~~P~~~~~G~~Ge~~~l~LELK~ 156 (156)
T PF01018_consen 132 ------------TNRAPRFATPGEPGEERKLELELKT 156 (156)
T ss_dssp ------------TCSS--EEE------EEEEEEEEE-
T ss_pred ------------CCCCCCccCCCCCceEEEEEEEEeC
Confidence 2356788899999999999999874
No 9
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.86 E-value=2.5e-21 Score=173.19 Aligned_cols=131 Identities=65% Similarity=1.052 Sum_probs=108.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
++|++||.+|||||||+|+|++.++.++.++++|.++..+.+.... ...+.++||||+.+.......+...|+
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~~~~~ 73 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-------GRSFVVADIPGLIEGASEGKGLGHRFL 73 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-------CCeEEEEecCcccCcccccCCchHHHH
Confidence 5799999999999999999999887778899999999888876542 137899999999765544456778888
Q ss_pred HhcccCCEEEEEeeCCCC-CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655 353 RHLRRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
++++.||++++|+|+++. ++.+.+..+.+++..+.+....+|+++|+||+|+.+..+.
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 132 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL 132 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh
Confidence 889999999999999988 6777888888888776554557999999999999765543
No 10
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=3.4e-21 Score=189.97 Aligned_cols=161 Identities=25% Similarity=0.454 Sum_probs=116.6
Q ss_pred hhhccccccccccccchhHHHhcCCCccchhhhHHhh-hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce
Q 014655 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILR-VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG 312 (421)
Q Consensus 234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk-~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g 312 (421)
.|+.++++...++++..+.+...++..+...-.-.+. ..+.|.+.|+||+|||||+++||+++|.|++|||||...++|
T Consensus 129 lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG 208 (346)
T COG1084 129 LRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG 208 (346)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe
Confidence 3444555555556655666655554443211000112 445789999999999999999999999999999999999999
Q ss_pred eecCCCCCCccccccceEEecCCccccccccc-CchhHH---HHHhcccCCEEEEEeeCCC--CCChhhHHHHHHHHHhc
Q 014655 313 RLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGRN---FLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMY 386 (421)
Q Consensus 313 ~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-~gl~~~---fL~~i~radvIl~VvD~s~--~~~~~~~~~l~~eL~~~ 386 (421)
++... ..+++++||||+.+..-+. ..+... .|+|+ .++|+|++|++. ..+.+....|++++...
T Consensus 209 hfe~~--------~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~ 278 (346)
T COG1084 209 HFERG--------YLRIQVIDTPGLLDRPLEERNEIERQAILALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKEL 278 (346)
T ss_pred eeecC--------CceEEEecCCcccCCChHHhcHHHHHHHHHHHHh--cCeEEEEEcCccccCCCHHHHHHHHHHHHHh
Confidence 99865 2489999999999865432 233333 34555 489999999986 45677777788888764
Q ss_pred CCCCCCCCEEEEEeCCCCCCCC
Q 014655 387 NPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 387 ~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...|+++|+||+|..+.+
T Consensus 279 ----f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 279 ----FKAPIVVVINKIDIADEE 296 (346)
T ss_pred ----cCCCeEEEEecccccchh
Confidence 458999999999988544
No 11
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=7.3e-21 Score=191.05 Aligned_cols=112 Identities=38% Similarity=0.696 Sum_probs=91.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCC--------CC--ccccccceEEecCCcccccc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT--------LG--AEKYSSEATLADLPGLIEGA 341 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~--------~~--~~~~~~~i~iiDtPGlie~a 341 (421)
..++||||.||+|||||+|+||.....+++|||||++|+.|++....- .. .......+.++|++|++.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 357999999999999999999999988899999999999998875320 00 00112358999999999999
Q ss_pred cccCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHH
Q 014655 342 HLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEEL 383 (421)
Q Consensus 342 ~~~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL 383 (421)
|+++||+.+||.+|+.+|+|++|||++. -+|.+|++.+..||
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL 133 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTEL 133 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHH
Confidence 9999999999999999999999999974 25566655554443
No 12
>PTZ00258 GTP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=192.12 Aligned_cols=116 Identities=33% Similarity=0.574 Sum_probs=94.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC--------Cc-cccccceEEecCCccccc
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GA-EKYSSEATLADLPGLIEG 340 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~--------~~-~~~~~~i~iiDtPGlie~ 340 (421)
....+|+|||.||||||||+|+|++.++.+++|||||++|+.|.+...... .. .....++.++||||++++
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 455689999999999999999999999989999999999999998654210 00 001236999999999999
Q ss_pred ccccCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHh
Q 014655 341 AHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRM 385 (421)
Q Consensus 341 a~~~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~ 385 (421)
++.+++++..|++++++||+++||||+.. .+|.++++.+..||..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~ 153 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELIL 153 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHH
Confidence 99989999999999999999999999852 3567777766665543
No 13
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.82 E-value=2.7e-20 Score=183.19 Aligned_cols=89 Identities=48% Similarity=0.780 Sum_probs=85.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
++|+|||+||+|||||||+||+++..+++|+|||+.|..|++++.. .+|+++|+||++++|+.++|.++.++
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--------a~IQild~Pgii~gas~g~grG~~vl 135 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--------AQIQLLDLPGIIEGASSGRGRGRQVL 135 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--------ceEEEEcCcccccCcccCCCCcceee
Confidence 7899999999999999999999999999999999999999999874 58999999999999999999999999
Q ss_pred HhcccCCEEEEEeeCCC
Q 014655 353 RHLRRTRLLVHVIDAAA 369 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~ 369 (421)
..++.||+|++|+|+..
T Consensus 136 sv~R~ADlIiiVld~~~ 152 (365)
T COG1163 136 SVARNADLIIIVLDVFE 152 (365)
T ss_pred eeeccCCEEEEEEecCC
Confidence 99999999999999975
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=4.3e-20 Score=189.18 Aligned_cols=135 Identities=28% Similarity=0.342 Sum_probs=114.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc--cccCchhH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HLGKGLGR 349 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a--~~~~gl~~ 349 (421)
+.|+|||.||+|||||+|+|++.+.++ +++|++|+|..++..+.. +.++.++||+|+.+.. ...+.+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~--------~~~f~lIDTgGl~~~~~~~l~~~i~~ 75 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL--------GREFILIDTGGLDDGDEDELQELIRE 75 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc--------CceEEEEECCCCCcCCchHHHHHHHH
Confidence 579999999999999999999999887 999999999999887643 4579999999998754 34556677
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFNP 421 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~e 421 (421)
+.+..++.||++|||||.....+.+|.. +.+.|.. .++|+++|+||+|-...++...+++.+|+.+
T Consensus 76 Qa~~Ai~eADvilfvVD~~~Git~~D~~-ia~~Lr~-----~~kpviLvvNK~D~~~~e~~~~efyslG~g~ 141 (444)
T COG1160 76 QALIAIEEADVILFVVDGREGITPADEE-IAKILRR-----SKKPVILVVNKIDNLKAEELAYEFYSLGFGE 141 (444)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCCEEEEEEcccCchhhhhHHHHHhcCCCC
Confidence 7888999999999999998877666644 5566664 4699999999999988888888999999875
No 15
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.81 E-value=7.9e-20 Score=185.37 Aligned_cols=114 Identities=37% Similarity=0.660 Sum_probs=92.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC--------Cc-cccccceEEecCCcccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL--------GA-EKYSSEATLADLPGLIEGAHL 343 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~--------~~-~~~~~~i~iiDtPGlie~a~~ 343 (421)
.+|+|||.||||||||+|+|++.++.+++|||||++|+.|.+...... .+ .....++.++||||+++++++
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 589999999999999999999999888999999999999988754310 00 001135999999999999999
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHhc
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMY 386 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~~ 386 (421)
+++++..||+++++||+|++|||+.. .+|.++++.+..||..+
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~ 135 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILA 135 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999853 25666666665555443
No 16
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.81 E-value=1.4e-19 Score=186.39 Aligned_cols=113 Identities=44% Similarity=0.703 Sum_probs=90.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCC----------------ccccccceEEecCCc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG----------------AEKYSSEATLADLPG 336 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~----------------~~~~~~~i~iiDtPG 336 (421)
.+|+|||+||||||||+|+|++.+..+++|||||++|+.|.+......+ ......++.++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 4799999999999999999999998889999999999999865321100 001124689999999
Q ss_pred ccccccccCchhHHHHHhcccCCEEEEEeeCCC-------------CCChhhHHHHHHHHHh
Q 014655 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRM 385 (421)
Q Consensus 337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~-------------~~~~~~~~~l~~eL~~ 385 (421)
++++++.+++++..||++++.||++++|+|++. .+|.++++.+..||..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~ 143 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDM 143 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999972 2455666555554443
No 17
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.80 E-value=1.5e-19 Score=181.17 Aligned_cols=111 Identities=45% Similarity=0.706 Sum_probs=90.0
Q ss_pred ecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCc----------------cccccceEEecCCccc
Q 014655 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGA----------------EKYSSEATLADLPGLI 338 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~----------------~~~~~~i~iiDtPGli 338 (421)
|++||.||||||||+|+|++....+++|||||.+|+.|........+. .....++.++||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 689999999999999999999988899999999999987764211000 0112469999999999
Q ss_pred ccccccCchhHHHHHhcccCCEEEEEeeCCC-------------CCChhhHHHHHHHHHh
Q 014655 339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA-------------ENPVNDYRTVKEELRM 385 (421)
Q Consensus 339 e~a~~~~gl~~~fL~~i~radvIl~VvD~s~-------------~~~~~~~~~l~~eL~~ 385 (421)
+++++.++++..||++++.||+++||+|++. .+|.++++.+.+||..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~ 140 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDM 140 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999974 2456677666666554
No 18
>COG2262 HflX GTPases [General function prediction only]
Probab=99.80 E-value=1.7e-19 Score=182.61 Aligned_cols=134 Identities=35% Similarity=0.436 Sum_probs=113.0
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
..++.|+||||+|||||||+|+|+++.....+..|+|++|....+.... +.++.+.||-|+|.+ ....|..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-------g~~vlLtDTVGFI~~--LP~~LV~ 260 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-------GRKVLLTDTVGFIRD--LPHPLVE 260 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-------CceEEEecCccCccc--CChHHHH
Confidence 4678999999999999999999999998889999999999999887653 357999999999986 5667887
Q ss_pred HHH---HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHH
Q 014655 350 NFL---RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSR 414 (421)
Q Consensus 350 ~fL---~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l 414 (421)
+|. +.+..||++++|||++++...+.++...+.|..... ..+|+|+|+||+|+....+....+
T Consensus 261 AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~~~~~~~~~ 326 (411)
T COG2262 261 AFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLEDEEILAEL 326 (411)
T ss_pred HHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCC--CCCCEEEEEecccccCchhhhhhh
Confidence 775 455679999999999999888888888888888654 459999999999988766544333
No 19
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.79 E-value=2.6e-19 Score=183.85 Aligned_cols=141 Identities=29% Similarity=0.368 Sum_probs=115.0
Q ss_pred ccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCcccc
Q 014655 247 RDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKY 325 (421)
Q Consensus 247 r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~ 325 (421)
++...++......|+ .|+...+|+++|.||||||||||+|++.+.+| .+.|+||+|.....++..
T Consensus 198 ~~~l~~ll~~~~~g~------ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~-------- 263 (454)
T COG0486 198 IAELDELLATAKQGK------ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN-------- 263 (454)
T ss_pred HHHHHHHHHhhhhhh------hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC--------
Confidence 445566777778887 78999999999999999999999999999887 999999999988888776
Q ss_pred ccceEEecCCccccccc--ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 326 SSEATLADLPGLIEGAH--LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~--~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
+..+.++||.|+.+... +..|+.+++ +.++.||+++||+|++.+.+.++...+. .+ ..++|+++|+||+|
T Consensus 264 G~pv~l~DTAGiRet~d~VE~iGIeRs~-~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~------~~~~~~i~v~NK~D 335 (454)
T COG0486 264 GIPVRLVDTAGIRETDDVVERIGIERAK-KAIEEADLVLFVLDASQPLDKEDLALIE-LL------PKKKPIIVVLNKAD 335 (454)
T ss_pred CEEEEEEecCCcccCccHHHHHHHHHHH-HHHHhCCEEEEEEeCCCCCchhhHHHHH-hc------ccCCCEEEEEechh
Confidence 35899999999998654 345666664 7889999999999999875556654433 11 15699999999999
Q ss_pred CCCCCC
Q 014655 404 LPEMYD 409 (421)
Q Consensus 404 l~~~~e 409 (421)
|.....
T Consensus 336 L~~~~~ 341 (454)
T COG0486 336 LVSKIE 341 (454)
T ss_pred cccccc
Confidence 987644
No 20
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.78 E-value=6.8e-20 Score=165.91 Aligned_cols=119 Identities=33% Similarity=0.474 Sum_probs=88.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc--ccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~--~~~gl~~~ 350 (421)
.+|+|+|.||+|||||+|+|++.+..+++||++|.+...|.+... +..+.++|+||+..-.+ ..+.+...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~--------~~~~~lvDlPG~ysl~~~s~ee~v~~~ 72 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG--------DQQVELVDLPGIYSLSSKSEEERVARD 72 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET--------TEEEEEEE----SSSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec--------CceEEEEECCCcccCCCCCcHHHHHHH
Confidence 379999999999999999999999889999999999999998865 25799999999865332 22334444
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
++. .+..|++++|+|+++ ...++. +..+|.. .++|+++|+||+|+....
T Consensus 73 ~l~-~~~~D~ii~VvDa~~--l~r~l~-l~~ql~e-----~g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 73 YLL-SEKPDLIIVVVDATN--LERNLY-LTLQLLE-----LGIPVVVVLNKMDEAERK 121 (156)
T ss_dssp HHH-HTSSSEEEEEEEGGG--HHHHHH-HHHHHHH-----TTSSEEEEEETHHHHHHT
T ss_pred HHh-hcCCCEEEEECCCCC--HHHHHH-HHHHHHH-----cCCCEEEEEeCHHHHHHc
Confidence 443 378999999999985 234444 4444444 469999999999987654
No 21
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.78 E-value=1.2e-18 Score=156.26 Aligned_cols=127 Identities=51% Similarity=0.908 Sum_probs=100.7
Q ss_pred ccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcc
Q 014655 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 356 (421)
Q Consensus 277 LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~ 356 (421)
|+|.+|||||||+|+|++.+..++++++||.+++.+.+.... ...+.++||||+.+.....+.+...|++.+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-------GARIQVADIPGLIEGASEGRGLGNQFLAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-------CCeEEEEeccccchhhhcCCCccHHHHHHHh
Confidence 689999999999999999887778899999999888765431 2478999999997765555667777888899
Q ss_pred cCCEEEEEeeCCCC------CChhhHHHHHHHHHhcCCC-----CCCCCEEEEEeCCCCCCCCCc
Q 014655 357 RTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPD-----YLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 357 radvIl~VvD~s~~------~~~~~~~~l~~eL~~~~~~-----l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
.+|++++|+|+++. .+.++...+..++..+... ...+|+++|+||+|+....+.
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 138 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL 138 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH
Confidence 99999999999886 4566666676677654322 246999999999999765543
No 22
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.78 E-value=6.1e-19 Score=179.08 Aligned_cols=126 Identities=37% Similarity=0.457 Sum_probs=98.2
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH-
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR- 349 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~- 349 (421)
..++|+|||+||||||||+|+|++.+..+.+++|||+++....+.... +..+.++||||++... ...+..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-------~~~i~l~DT~G~~~~l--~~~lie~ 258 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-------GGEVLLTDTVGFIRDL--PHELVAA 258 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-------CceEEEEecCcccccC--CHHHHHH
Confidence 558999999999999999999999886668999999999888776532 2479999999996531 122222
Q ss_pred --HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 --NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 --~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++++..||++++|+|++++...++...+.+.+..... .++|+++|+||+|+.+.
T Consensus 259 f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~--~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 259 FRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA--EDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc--CCCCEEEEEEeecCCCh
Confidence 335667899999999999988766666666666665432 36899999999999754
No 23
>PRK11058 GTPase HflX; Provisional
Probab=99.77 E-value=1e-18 Score=181.59 Aligned_cols=126 Identities=40% Similarity=0.507 Sum_probs=97.7
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.++.|+|||+||||||||+|+|++.+..+.+++|+|+++....+.... ...+.++||||++... ...+...
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-------~~~~~l~DTaG~~r~l--p~~lve~ 266 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-------VGETVLADTVGFIRHL--PHDLVAA 266 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-------CCeEEEEecCcccccC--CHHHHHH
Confidence 457899999999999999999999988888999999999887776532 1368999999996531 1223333
Q ss_pred H---HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 F---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 f---L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
| ++++..||++++|+|++++...++...+.+.|..... .++|+++|+||+|+...
T Consensus 267 f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~--~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 267 FKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA--HEIPTLLVMNKIDMLDD 324 (426)
T ss_pred HHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccCCCc
Confidence 4 5667889999999999988766766656666665432 36899999999999753
No 24
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.77 E-value=6.8e-19 Score=172.93 Aligned_cols=112 Identities=39% Similarity=0.683 Sum_probs=91.5
Q ss_pred ecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCC---ccc------cccceEEecCCcccccccccC
Q 014655 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLG---AEK------YSSEATLADLPGLIEGAHLGK 345 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~---~~~------~~~~i~iiDtPGlie~a~~~~ 345 (421)
|+|||+||||||||+|+|++.+..+++|||||++|+.|.+......- ... ...++.++||||++++++.++
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 68999999999999999999999889999999999999887542100 000 112599999999999999999
Q ss_pred chhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHhc
Q 014655 346 GLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMY 386 (421)
Q Consensus 346 gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~~ 386 (421)
+++..|+.++++||++++|||+.. .+|..+++.+..||..+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~ 131 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILA 131 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999853 25677777766666554
No 25
>COG1159 Era GTPase [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=169.98 Aligned_cols=122 Identities=32% Similarity=0.430 Sum_probs=100.9
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 351 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~f 351 (421)
-|++||.||||||||+|+|.+++.++ ++.|.||+....|++..+ +.+++++||||+.+..+ .++-+.+..
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--------~~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--------NAQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--------CceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 48999999999999999999999887 999999999999988765 35899999999987643 355566777
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...+..+|+++||+|+.......+ +.+.+.|.. .+.|+++++||+|....+.
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~-----~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGD-EFILEQLKK-----TKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccH-HHHHHHHhh-----cCCCeEEEEEccccCCcHH
Confidence 888999999999999987543333 455666654 4689999999999988776
No 26
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.75 E-value=4.2e-18 Score=166.59 Aligned_cols=121 Identities=26% Similarity=0.286 Sum_probs=91.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-cCchhHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNF 351 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-~~gl~~~f 351 (421)
.|+++|.||||||||+|+|++.+.. ++++|.||.+...+..... ..++.++||||+.+..+. .+.+...+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~--------~~qii~vDTPG~~~~~~~l~~~~~~~~ 73 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG--------ASQIIFIDTPGFHEKKHSLNRLMMKEA 73 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC--------CcEEEEEECcCCCCCcchHHHHHHHHH
Confidence 5899999999999999999998865 4889999998776665433 246999999999765221 22234445
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...++.+|+++||+|++...... +.+.+.+.. .++|+++|+||+|+....+
T Consensus 74 ~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~~ 124 (270)
T TIGR00436 74 RSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKFKDK 124 (270)
T ss_pred HHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-----cCCCEEEEEECeeCCCHHH
Confidence 67789999999999998754432 445556654 3689999999999975443
No 27
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=6.4e-18 Score=167.11 Aligned_cols=113 Identities=40% Similarity=0.706 Sum_probs=92.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC---------CccccccceEEecCCcccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEGAHL 343 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~---------~~~~~~~~i~iiDtPGlie~a~~ 343 (421)
.++||||.||+|||||+|+||+.....++|||||++|+.+.+...... +.......+++.|++|+..+||.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence 479999999999999999999999889999999999999987643110 00011235899999999999999
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHh
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRM 385 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~ 385 (421)
++||+..||.||+.+|.|++||++.. -+|..+++.+.+||..
T Consensus 101 G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~l 152 (391)
T KOG1491|consen 101 GEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRL 152 (391)
T ss_pred CcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHH
Confidence 99999999999999999999999865 2566666666655543
No 28
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.73 E-value=8.9e-18 Score=142.91 Aligned_cols=113 Identities=34% Similarity=0.560 Sum_probs=87.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC--chhHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK--GLGRN 350 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~--gl~~~ 350 (421)
+|+|+|.||||||||+|+|++.+. .+++.+++|..+..+.+... ...+.++||||+.+...... .....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~--------~~~~~~vDtpG~~~~~~~~~~~~~~~~ 72 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN--------NKKFILVDTPGINDGESQDNDGKEIRK 72 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET--------TEEEEEEESSSCSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec--------eeeEEEEeCCCCcccchhhHHHHHHHH
Confidence 589999999999999999998754 45889999998866655443 24679999999987644322 23446
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK 401 (421)
+++.+..+|+++||+|++. ...++...+.++|+ ..+|+++|+||
T Consensus 73 ~~~~~~~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 73 FLEQISKSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp HHHHHCTESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred HHHHHHHCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 8888999999999999776 22344556666674 46899999998
No 29
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.71 E-value=3.1e-17 Score=157.60 Aligned_cols=90 Identities=46% Similarity=0.696 Sum_probs=78.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
++|+++|+||+|||||+|+|++....+++|+|||.++..|.+... +.++.++||||+.+.+....++...++
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--------~~~i~l~DtpG~~~~~~~~~~~~~~~l 72 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--------GAKIQLLDLPGIIEGAADGKGRGRQVI 72 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--------CeEEEEEECCCcccccccchhHHHHHH
Confidence 479999999999999999999998888999999999998887654 247999999999887665566777788
Q ss_pred HhcccCCEEEEEeeCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAE 370 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~ 370 (421)
..++.+|++++|+|+++.
T Consensus 73 ~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 73 AVARTADLILMVLDATKP 90 (233)
T ss_pred HhhccCCEEEEEecCCcc
Confidence 899999999999999753
No 30
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.70 E-value=4.7e-17 Score=165.28 Aligned_cols=115 Identities=36% Similarity=0.620 Sum_probs=95.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCC--------Cc-cccccceEEecCCccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTL--------GA-EKYSSEATLADLPGLIEGAH 342 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~--------~~-~~~~~~i~iiDtPGlie~a~ 342 (421)
.++||||+||+|||||+|+||+..+ .+++|||||.+|+.|++...+.. .. ......+.++|+||++++++
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5799999999999999999999999 88999999999999998764310 00 00123689999999999999
Q ss_pred ccCchhHHHHHhcccCCEEEEEeeCCCC----------CChhhHHHHHHHHHhcC
Q 014655 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEELRMYN 387 (421)
Q Consensus 343 ~~~gl~~~fL~~i~radvIl~VvD~s~~----------~~~~~~~~l~~eL~~~~ 387 (421)
++.|++..||.|++.||++++|+|+... +|..+++.+.+||..++
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d 137 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKAD 137 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998642 56677777777776654
No 31
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.69 E-value=1.5e-16 Score=142.29 Aligned_cols=126 Identities=30% Similarity=0.457 Sum_probs=87.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC-chhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~-gl~~~f 351 (421)
++|+++|.+|||||||+|+|++....+.+++++|..+..+.+... ..++.+|||||+.+.....+ .+....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 72 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--------YLRWQVIDTPGLLDRPLEERNTIEMQA 72 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--------ceEEEEEECCCcCCccccCCchHHHHH
Confidence 478999999999999999999988777788999988887766543 24799999999865322211 111111
Q ss_pred HHhc-ccCCEEEEEeeCCCCCCh--hhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 352 LRHL-RRTRLLVHVIDAAAENPV--NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 352 L~~i-~radvIl~VvD~s~~~~~--~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
+..+ ..+|++++|+|+++.... +....+.+++.... .+.|+++|+||+|+....+
T Consensus 73 ~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~ 130 (168)
T cd01897 73 ITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTFED 130 (168)
T ss_pred HHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCchhh
Confidence 1111 236899999999875432 33344555554422 3689999999999976543
No 32
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=1.5e-16 Score=139.44 Aligned_cols=130 Identities=25% Similarity=0.361 Sum_probs=93.1
Q ss_pred cccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHHHHH
Q 014655 276 GLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNFLR 353 (421)
Q Consensus 276 ~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~fL~ 353 (421)
+++|.+|||||||+|+|++.... +.+++.+|.+.....+... +..+.++||||+.+... ....+...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~ 72 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--------GREFILIDTGGIEPDDEGISKEIREQAEL 72 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--------CeEEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 58999999999999999987643 4778888877666555433 24789999999976532 11223344556
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
.++.+|++++|+|+.+.....+. .+...+.. .+.|+++|+||+|+.........++.+++
T Consensus 73 ~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~-----~~~piiiv~nK~D~~~~~~~~~~~~~~~~ 132 (157)
T cd01894 73 AIEEADVILFVVDGREGLTPADE-EIAKYLRK-----SKKPVILVVNKVDNIKEEDEAAEFYSLGF 132 (157)
T ss_pred HHHhCCEEEEEEeccccCCccHH-HHHHHHHh-----cCCCEEEEEECcccCChHHHHHHHHhcCC
Confidence 77889999999999875544443 34455554 35899999999999876655555555554
No 33
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.69 E-value=2.3e-16 Score=146.76 Aligned_cols=129 Identities=36% Similarity=0.437 Sum_probs=96.6
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+..++|+|+|.+|||||||+|+|++....+.+++++|.++....+.... ...+.++||||+.+.... .+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~i~Dt~G~~~~~~~--~~~~ 109 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-------GREVLLTDTVGFIRDLPH--QLVE 109 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-------CceEEEeCCCccccCCCH--HHHH
Confidence 4568999999999999999999999876667788899888777665432 127999999998654221 1212
Q ss_pred ---HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 350 ---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 ---~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..+.++..+|++++|+|++++....+...+.+.+..+.. .++|+++|+||+|+.....
T Consensus 110 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~--~~~~viiV~NK~Dl~~~~~ 170 (204)
T cd01878 110 AFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA--EDIPMILVLNKIDLLDDEE 170 (204)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc--CCCCEEEEEEccccCChHH
Confidence 223456789999999999987766666666666665432 3589999999999976543
No 34
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.66 E-value=4e-16 Score=161.42 Aligned_cols=133 Identities=27% Similarity=0.348 Sum_probs=100.9
Q ss_pred eecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 351 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~f 351 (421)
+|++||.||||||||+|+|++.+.+ +.+++++|.+...+.+... +..+.++||||+..... ....+....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~--------~~~~~liDTpG~~~~~~~~~~~~~~~~ 72 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG--------GREFILIDTGGIEEDDDGLDKQIREQA 72 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC--------CeEEEEEECCCCCCcchhHHHHHHHHH
Confidence 4899999999999999999998765 4889999998887776543 24699999999854321 112334445
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN 420 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~ 420 (421)
..+++.||+++||+|+..+....+ ..+.++|+. .++|+++|+||+|+........+++.+|+.
T Consensus 73 ~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~-----~~~piilVvNK~D~~~~~~~~~~~~~lg~~ 135 (429)
T TIGR03594 73 EIAIEEADVILFVVDGREGLTPED-EEIAKWLRK-----SGKPVILVANKIDGKKEDAVAAEFYSLGFG 135 (429)
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH-----hCCCEEEEEECccCCcccccHHHHHhcCCC
Confidence 667889999999999987655444 345666765 368999999999998766666677778774
No 35
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.65 E-value=5.9e-16 Score=162.95 Aligned_cols=137 Identities=25% Similarity=0.290 Sum_probs=98.9
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCch
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGL 347 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl 347 (421)
..+++|+|||.||||||||+|+|++.+.. +.+.+++|.+...+.+... +..+.+|||||+..... ....+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~~ 107 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN--------GRRFTVVDTGGWEPDAKGLQASV 107 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC--------CcEEEEEeCCCcCCcchhHHHHH
Confidence 44579999999999999999999987754 4788899988776665443 24689999999864221 11122
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN 420 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~ 420 (421)
......+++.||++|+|+|+++..+..+ ..+.+++.. .++|+++|+||+|+........++..+|+.
T Consensus 108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~~~~~~~~g~~ 174 (472)
T PRK03003 108 AEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR-----SGKPVILAANKVDDERGEADAAALWSLGLG 174 (472)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECccCCccchhhHHHHhcCCC
Confidence 2334456789999999999998765544 445666664 468999999999997654444556666654
No 36
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.65 E-value=8.8e-16 Score=135.21 Aligned_cols=115 Identities=33% Similarity=0.475 Sum_probs=84.9
Q ss_pred ccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHHHHHh
Q 014655 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRH 354 (421)
Q Consensus 277 LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~fL~~ 354 (421)
|+|.+|+|||||+|+|++....+.+++++|.+.....+..+ +..+.++||||+.+.... ...+...++.+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--------GKEIEIVDLPGTYSLSPYSEDEKVARDFLLG 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--------CeEEEEEECCCccccCCCChhHHHHHHHhcC
Confidence 68999999999999999987667888999998877776654 236899999998764321 22344445444
Q ss_pred cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+.+|++++|+|+++... ...+..++.. .++|+++|+||+|+.+..
T Consensus 73 -~~~d~vi~v~d~~~~~~---~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~ 117 (158)
T cd01879 73 -EKPDLIVNVVDATNLER---NLYLTLQLLE-----LGLPVVVALNMIDEAEKR 117 (158)
T ss_pred -CCCcEEEEEeeCCcchh---HHHHHHHHHH-----cCCCEEEEEehhhhcccc
Confidence 68999999999986432 2223334444 368999999999997654
No 37
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.65 E-value=3.6e-16 Score=163.71 Aligned_cols=125 Identities=29% Similarity=0.310 Sum_probs=92.3
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g 346 (421)
.++...+|+++|.||||||||+|+|++.+.. +.++++||.+.....+... +..+.++||||+.+....-+.
T Consensus 211 ~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--------g~~i~l~DT~G~~~~~~~ie~ 282 (449)
T PRK05291 211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD--------GIPLRLIDTAGIRETDDEVEK 282 (449)
T ss_pred HhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC--------CeEEEEEeCCCCCCCccHHHH
Confidence 4566789999999999999999999998764 5889999998877666543 246899999998653211111
Q ss_pred h-hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 347 L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 347 l-~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
. .+..+.++..+|++++|+|++++...++...+.. ..++|+++|+||+|+....
T Consensus 283 ~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~ 337 (449)
T PRK05291 283 IGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEI 337 (449)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccc
Confidence 1 1224567889999999999988765554433322 2468999999999997543
No 38
>PRK00089 era GTPase Era; Reviewed
Probab=99.64 E-value=5.8e-16 Score=152.63 Aligned_cols=120 Identities=33% Similarity=0.452 Sum_probs=88.1
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRNF 351 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~f 351 (421)
-|+|+|.||||||||+|+|++.+..+ ++.+.||.+...+.+... ..++.++||||+.+... .++.+....
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--------~~qi~~iDTPG~~~~~~~l~~~~~~~~ 78 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--------DAQIIFVDTPGIHKPKRALNRAMNKAA 78 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--------CceEEEEECCCCCCchhHHHHHHHHHH
Confidence 58999999999999999999988654 788888887776665532 24799999999876432 122233444
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+..+|++++|+|+++... +....+.+.+.. .+.|+++|+||+|+...
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~-~~~~~i~~~l~~-----~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIG-PGDEFILEKLKK-----VKTPVILVLNKIDLVKD 128 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCC-hhHHHHHHHHhh-----cCCCEEEEEECCcCCCC
Confidence 567789999999999987332 223344445543 35899999999999843
No 39
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=9.5e-16 Score=159.14 Aligned_cols=134 Identities=27% Similarity=0.347 Sum_probs=99.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~ 350 (421)
++|+|||.||||||||+|+|++.+.+ +.+++++|.+...+.+... +..+.+|||||+.+... ....+...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~~~~~ 73 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL--------GREFILIDTGGIEPDDDGFEKQIREQ 73 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC--------CcEEEEEECCCCCCcchhHHHHHHHH
Confidence 57999999999999999999998764 4789999988877766543 24799999999976321 11223344
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN 420 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~ 420 (421)
...+++.+|++|||+|++++....+. .+.++|+. .++|+++|+||+|+...++...++..+|+.
T Consensus 74 ~~~~~~~ad~il~vvd~~~~~~~~~~-~~~~~l~~-----~~~piilv~NK~D~~~~~~~~~~~~~lg~~ 137 (435)
T PRK00093 74 AELAIEEADVILFVVDGRAGLTPADE-EIAKILRK-----SNKPVILVVNKVDGPDEEADAYEFYSLGLG 137 (435)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECccCccchhhHHHHHhcCCC
Confidence 56678899999999999876544443 35556665 368999999999987655555666677664
No 40
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=5.2e-16 Score=159.30 Aligned_cols=123 Identities=26% Similarity=0.304 Sum_probs=99.8
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch--
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-- 347 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl-- 347 (421)
...+|++||.||+|||||+|+|++.+..+ ++.++||+++....++.+ +..+.++||.|+.....-..++
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~--------~~~~~liDTAGiRrk~ki~e~~E~ 248 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD--------GRKYVLIDTAGIRRKGKITESVEK 248 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC--------CeEEEEEECCCCCcccccccceEE
Confidence 45799999999999999999999998776 999999999988777654 3579999999998654332222
Q ss_pred --hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 348 --GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 348 --~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
....++.+++||++++|+|++.+...++.+.+-...+ .+++++||+||+|+.+.
T Consensus 249 ~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~------~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 249 YSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEE------AGRGIVIVVNKWDLVEE 304 (444)
T ss_pred EeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH------cCCCeEEEEEccccCCc
Confidence 2345788999999999999999887777665544444 47999999999999876
No 41
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.64 E-value=9.3e-16 Score=160.24 Aligned_cols=124 Identities=30% Similarity=0.402 Sum_probs=92.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--c
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--G 344 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~ 344 (421)
.++...+|+++|.||||||||+|+|++.+. .+.++|+||.+.....+..+ +..+.++||||+.+.... .
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~--------g~~v~l~DTaG~~~~~~~ie~ 270 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN--------GILIKLLDTAGIREHADFVER 270 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC--------CEEEEEeeCCCcccchhHHHH
Confidence 456778999999999999999999998765 45899999998877766654 246899999999754221 1
Q ss_pred CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++ .....+++.||++++|+|++++.+.++. ++.++.. .++|+++|+||+|+...
T Consensus 271 ~gi-~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 271 LGI-EKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-----SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHH-HHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-----CCCCEEEEEECccCCCc
Confidence 111 1234678899999999999887655543 3344432 36899999999999654
No 42
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=5.5e-16 Score=159.57 Aligned_cols=130 Identities=25% Similarity=0.355 Sum_probs=99.5
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc-c--c
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA-H--L 343 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a-~--~ 343 (421)
+++..++|+|+|.||||||||+|+|++.+..| ++.|+||+|.....++.. +.++.++||.|+.+.. . +
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~--------G~~v~L~DTAGiRe~~~~~iE 335 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN--------GVPVRLSDTAGIREESNDGIE 335 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC--------CeEEEEEeccccccccCChhH
Confidence 67888999999999999999999999999876 999999999888777654 3589999999999821 1 2
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHh-------cCCCCCCCCEEEEEeCCCCCCC
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-------YNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~-------~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..|+.+++ +.+++||++++|+|+......++.. +.+.|+. +...+...|+++|.||+|+...
T Consensus 336 ~~gI~rA~-k~~~~advi~~vvda~~~~t~sd~~-i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 336 ALGIERAR-KRIERADVILLVVDAEESDTESDLK-IARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHhHHHHH-HHHhhcCEEEEEecccccccccchH-HHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 34555555 6789999999999995544444332 2222222 2234456899999999999876
No 43
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.62 E-value=1.9e-15 Score=132.16 Aligned_cols=121 Identities=28% Similarity=0.261 Sum_probs=87.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC-chhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~-gl~~~ 350 (421)
.+|+++|.+|||||||+++|++.... +.+++.+|.+.....+... ..++.++||||+.+....-. .....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~DtpG~~~~~~~~~~~~~~~ 73 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--------GIPVRLIDTAGIRETEDEIEKIGIER 73 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--------CEEEEEEECCCcCCCcchHHHHHHHH
Confidence 47999999999999999999987753 4778888877665555432 24789999999876532100 11123
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...++.++|++++|+|++++.+..+...+.. ...+|+++|+||+|+.+..+
T Consensus 74 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 74 AREAIEEADLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred HHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCccc
Confidence 4466789999999999998766555543332 24689999999999986553
No 44
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.62 E-value=2.6e-15 Score=133.07 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=86.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|++.+......+.++.+.....+.... ....+.+|||||.... ......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~D~~G~~~~-------~~~~~~ 68 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLED------KTVRLQLWDTAGQERF-------RSLIPS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECC------EEEEEEEEECCCcHHH-------HHHHHH
Confidence 799999999999999999999887666667777665554443321 1236899999996442 112334
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.+..+|++++|+|++++.++++...+...+..... .+.|+++|+||+|+..
T Consensus 69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~ 119 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSD 119 (161)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccc
Confidence 56889999999999987766666666666544322 2689999999999954
No 45
>PRK15494 era GTPase Era; Provisional
Probab=99.61 E-value=1.9e-15 Score=152.83 Aligned_cols=121 Identities=31% Similarity=0.343 Sum_probs=87.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~ 350 (421)
.+|+++|.||||||||+|+|.+.+..+ ++.+.||.+...+.+... +.++.+|||||+.+..+ ....+.+.
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~--------~~qi~~~DTpG~~~~~~~l~~~~~r~ 124 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK--------DTQVILYDTPGIFEPKGSLEKAMVRC 124 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC--------CeEEEEEECCCcCCCcccHHHHHHHH
Confidence 489999999999999999999987654 778889987777766543 24799999999865322 22233344
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+..++.||+++||+|++..... ....+.+.+.. .+.|.++|+||+|+...
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~-~~~~il~~l~~-----~~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDD-ITHNILDKLRS-----LNIVPIFLLNKIDIESK 175 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCH-HHHHHHHHHHh-----cCCCEEEEEEhhcCccc
Confidence 45668899999999998753221 11334455554 24688899999999653
No 46
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.61 E-value=5.9e-15 Score=133.48 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=84.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
.|+++|.+|||||||+++|++... ..+ ..|.......+... ...+.++||||..+. ...+..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~~-~~t~g~~~~~~~~~--------~~~~~i~D~~G~~~~-------~~~~~~ 62 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KKV-APTVGFTPTKLRLD--------KYEVCIFDLGGGANF-------RGIWVN 62 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--ccc-cCcccceEEEEEEC--------CEEEEEEECCCcHHH-------HHHHHH
Confidence 378999999999999999997622 111 12222222223222 246899999996432 233556
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
+++.||+++||+|+++....+....++..+... ....++|+++|+||+|+.......+..+.+++
T Consensus 63 ~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l 127 (167)
T cd04161 63 YYAEAHGLVFVVDSSDDDRVQEVKEILRELLQH-PRVSGKPILVLANKQDKKNALLGADVIEYLSL 127 (167)
T ss_pred HHcCCCEEEEEEECCchhHHHHHHHHHHHHHcC-ccccCCcEEEEEeCCCCcCCCCHHHHHHhcCc
Confidence 789999999999999876555555555544432 12347899999999999876655444444443
No 47
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.60 E-value=3.7e-15 Score=136.34 Aligned_cols=121 Identities=25% Similarity=0.268 Sum_probs=84.6
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC--CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc----
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---- 344 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~---- 344 (421)
..++|+++|.+|+|||||+|+|++.. ..+++.+++|.+.....++ ..+.++||||+.......
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtpG~~~~~~~~~~~~ 85 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-----------DGFRLVDLPGYGYAKVSKEEKE 85 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-----------CcEEEEeCCCCccccCChhHHH
Confidence 34689999999999999999999875 3446778888776544331 258999999976432111
Q ss_pred --CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 345 --KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 345 --~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+...|++..+.++++++|+|++++....+. .+..++.. .++|+++|+||+|+....
T Consensus 86 ~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~-----~~~pviiv~nK~D~~~~~ 145 (179)
T TIGR03598 86 KWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE-----RGIPVLIVLTKADKLKKS 145 (179)
T ss_pred HHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECcccCCHH
Confidence 11223445555567999999999876544443 33455544 368999999999997643
No 48
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.60 E-value=6.8e-15 Score=130.38 Aligned_cols=121 Identities=26% Similarity=0.349 Sum_probs=86.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh---
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG--- 348 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~--- 348 (421)
.+|+++|.+|+|||||+|+|++.... ..+++++|.......+... +..+.++||||+.+..+....+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~iiDtpG~~~~~~~~~~~e~~~ 74 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--------GKKYTLIDTAGIRRKGKVEEGIEKYS 74 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC--------CeeEEEEECCCCccccchhccHHHHH
Confidence 57999999999999999999987643 3667788776654444432 23689999999876533322221
Q ss_pred -HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 -RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 -~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+.++..+|++++|+|++++....... +...+.. .+.|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 75 VLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE-----EGKALVIVVNKWDLVEK 128 (174)
T ss_pred HHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh-----cCCCEEEEEeccccCCc
Confidence 22345678899999999998876554433 3333332 35899999999999766
No 49
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.60 E-value=5.1e-15 Score=153.17 Aligned_cols=121 Identities=23% Similarity=0.322 Sum_probs=91.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh--
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-- 348 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~-- 348 (421)
..+|+++|.||+|||||+|+|++.+.. +.++++||.++....+... +..+.++||||+.+..+....+.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~e~~ 243 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN--------GKKYLLIDTAGIRRKGKVTEGVEKY 243 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC--------CcEEEEEECCCccccccchhhHHHH
Confidence 468999999999999999999987754 4789999998776665443 23689999999976544332222
Q ss_pred --HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 349 --RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 349 --~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
...+++++.||++|+|+|++++....+.+. ...+.. .++|+++|+||+|+.+
T Consensus 244 ~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~-~~~~~~-----~~~~iiiv~NK~Dl~~ 297 (429)
T TIGR03594 244 SVLRTLKAIERADVVLLVLDATEGITEQDLRI-AGLILE-----AGKALVIVVNKWDLVK 297 (429)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-----cCCcEEEEEECcccCC
Confidence 123567899999999999998776666543 333333 3589999999999983
No 50
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.60 E-value=8.8e-15 Score=129.57 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=75.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|++.......+. .|.......+... ...+.++||||..+. ...+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~~~~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKG--------NLSFTAFDMSGQGKY-------RGLWEH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEEC--------CEEEEEEECCCCHhh-------HHHHHH
Confidence 478999999999999999998653232222 1211111122211 246899999997543 112334
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhc-CCCCCCCCEEEEEeCCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY-NPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~-~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
+++.+|+++||+|+++.........+...+... .....+.|+++|+||+|+.....
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~ 121 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT 121 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC
Confidence 568899999999998765443333333333221 11114689999999999976543
No 51
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-15 Score=145.94 Aligned_cols=110 Identities=37% Similarity=0.564 Sum_probs=96.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
++|+++|+|.+||||||..++..+...+.|.|||+....|++++.. ..|++.|.||++++|++++|.++...
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--------a~IQllDLPGIieGAsqgkGRGRQvi 134 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--------ANIQLLDLPGIIEGASQGKGRGRQVI 134 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--------ceEEEecCcccccccccCCCCCceEE
Confidence 6899999999999999999999999999999999999999998873 47999999999999999999999888
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE 392 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~ 392 (421)
...+.||+|++|+|++.. ..+-+.|..||+.....+.+
T Consensus 135 avArtaDlilMvLDatk~--e~qr~~le~ELe~vGiRLNk 172 (364)
T KOG1486|consen 135 AVARTADLILMVLDATKS--EDQREILEKELEAVGIRLNK 172 (364)
T ss_pred EEeecccEEEEEecCCcc--hhHHHHHHHHHHHhceeccC
Confidence 888899999999999854 33445677888886655544
No 52
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=5.1e-15 Score=153.68 Aligned_cols=123 Identities=25% Similarity=0.344 Sum_probs=92.6
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh-
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG- 348 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~- 348 (421)
...+|+++|.||||||||+|+|++.+.. +.++++||.+.....+... +..+.++||||+.+..+....+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~--------~~~~~lvDT~G~~~~~~~~~~~e~ 243 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD--------GQKYTLIDTAGIRRKGKVTEGVEK 243 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC--------CeeEEEEECCCCCCCcchhhHHHH
Confidence 3579999999999999999999987754 4889999988765555432 24689999999976554433332
Q ss_pred ---HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 ---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 ---~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...++++++||++|+|+|++.+....+.. +...+.. ..+|+++|+||+|+.+.
T Consensus 244 ~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~-----~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 244 YSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE-----AGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCcEEEEEECccCCCH
Confidence 23356789999999999999877666654 3344433 35899999999999843
No 53
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.59 E-value=7.5e-15 Score=131.05 Aligned_cols=119 Identities=21% Similarity=0.286 Sum_probs=79.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc----cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i----a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+|+++|.+|+|||||+++|++..... .....+|.....+.+.++ ...+.++||||+.+. ..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~ 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVG--------NARLKFWDLGGQESL-------RS 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEEC--------CEEEEEEECCCChhh-------HH
Confidence 47899999999999999998754321 122344555555555443 247999999997543 22
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+..+++.+|++++|+|+++.........+...+... ....+.|+++|+||+|+....
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~D~~~~~ 123 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRN-EALEGVPLLILANKQDLPDAL 123 (167)
T ss_pred HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEEccccccCC
Confidence 3445678999999999998765444443333333221 122468999999999987653
No 54
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.59 E-value=9.2e-15 Score=134.56 Aligned_cols=129 Identities=24% Similarity=0.290 Sum_probs=85.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++.+... + .+|..+....+... ..++.++||||.... ...+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~--------~~~~~~~D~~G~~~~-------~~~~ 78 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIG--------NIKFTTFDLGGHQQA-------RRLW 78 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEEC--------CEEEEEEECCCCHHH-------HHHH
Confidence 3689999999999999999999865432 2 23445554444332 247899999997543 2234
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
..+++.+|+++||+|+++++..+.....+.++... ....+.|+++|+||+|+.......+....+++
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l 145 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPYAASEDELRYALGL 145 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCCCHHHHHHHcCC
Confidence 45678999999999998765444433333332221 12356899999999999754433333344544
No 55
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=7.1e-15 Score=154.80 Aligned_cols=123 Identities=24% Similarity=0.284 Sum_probs=90.6
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh-
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG- 348 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~- 348 (421)
...+|+++|.||||||||+|+|++.+.. +.++++||.++....+... +..+.++||||+.+......+..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~--------~~~~~l~DTaG~~~~~~~~~~~e~ 281 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG--------GKTWRFVDTAGLRRRVKQASGHEY 281 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC--------CEEEEEEECCCccccccccchHHH
Confidence 3479999999999999999999998753 5889999998876666543 24689999999865432211111
Q ss_pred -H--HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 -R--NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 -~--~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
. .....++.||++++|+|+++..+.++...+ ..+.. .++|+|+|+||+|+...
T Consensus 282 ~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~-~~~~~-----~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 282 YASLRTHAAIEAAEVAVVLIDASEPISEQDQRVL-SMVIE-----AGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECcccCCh
Confidence 0 112456899999999999988777666543 33333 46899999999999754
No 56
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.58 E-value=1.4e-14 Score=126.06 Aligned_cols=117 Identities=22% Similarity=0.202 Sum_probs=81.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|.+.+......+.++.+.....+... .....+.++|+||..... .....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~~~l~D~~g~~~~~-------~~~~~ 68 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID------GKTVKLQIWDTAGQERFR-------SITPS 68 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC------CEEEEEEEEecCChHHHH-------HHHHH
Confidence 68999999999999999999887655433333333222222221 112468999999975431 12344
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
.++.+|++++|+|++++...+....+...+..... ...|+++|+||+|+.
T Consensus 69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 56789999999999886656666666666655432 458999999999996
No 57
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=9.3e-15 Score=161.03 Aligned_cols=137 Identities=23% Similarity=0.274 Sum_probs=98.7
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCch
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGL 347 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl 347 (421)
...++|+++|.||||||||+|+|++.+..+ .++|++|.+...+..... +..+.+|||||+..... ....+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~~ 344 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA--------GTDFKLVDTGGWEADVEGIDSAI 344 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC--------CEEEEEEeCCCcCCCCccHHHHH
Confidence 456789999999999999999999887654 789999988766655432 24789999999864311 11123
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN 420 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~ 420 (421)
.......++.||++|||+|++......+ ..+.+.|+. .++|+++|+||+|+.........+..+|+.
T Consensus 345 ~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~ 411 (712)
T PRK09518 345 ASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-----AGKPVVLAVNKIDDQASEYDAAEFWKLGLG 411 (712)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-----cCCCEEEEEECcccccchhhHHHHHHcCCC
Confidence 3334556789999999999986543333 345566664 469999999999987655455566666654
No 58
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.58 E-value=1.1e-14 Score=129.97 Aligned_cols=121 Identities=19% Similarity=0.116 Sum_probs=84.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|.+.+......|.++.+.....+.... ....+.++||||..+.. ....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~~-------~~~~ 70 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDG------KTIKAQIWDTAGQERYR-------AITS 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC------EEEEEEEEeCCChHHHH-------HHHH
Confidence 5899999999999999999998775544444444333322332221 12368999999975431 1123
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+++.|+++++|+|+++..+.+++..+..++..... .+.|+++|+||+|+....
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~ 124 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLR 124 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc
Confidence 456789999999999987766666666666655432 358999999999997543
No 59
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.57 E-value=1.6e-14 Score=130.18 Aligned_cols=121 Identities=17% Similarity=0.058 Sum_probs=83.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|++||.+|||||||++++++.+......+..+.+.....+.... ....+.+|||||..+. ....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG------KQIKLQIWDTAGQESF-------RSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCcHHH-------HHHH
Confidence 36899999999999999999998765443323222332222222211 1246899999996432 2223
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+++.+|++++|+|++++.+.+++..|..++..+. ..+.|+++|+||+|+...
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESR 124 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccc
Confidence 456688999999999998777777777777776643 246899999999999743
No 60
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.57 E-value=2e-14 Score=127.98 Aligned_cols=117 Identities=23% Similarity=0.186 Sum_probs=81.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
+.|+++|.+|+|||||+++|+..+......+++|.+.....+.... .....+.++||||..+. .....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~iiDtpG~~~~-------~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-----LKIPGITFIDTPGHEAF-------TNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-----CCcceEEEEeCCCcHHH-------HHHHH
Confidence 3589999999999999999998776555556667655444444320 01247899999997542 11223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+..+|++++|+|+++....+.+.. ...+.. .++|+++|+||+|+...
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~-~~~~~~-----~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEA-IKLAKA-----ANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHH-HHHHHH-----cCCCEEEEEEceecccc
Confidence 45678999999999987654444333 334443 46899999999998754
No 61
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.57 E-value=1.7e-14 Score=126.36 Aligned_cols=121 Identities=32% Similarity=0.399 Sum_probs=83.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-cCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-~~gl~~~ 350 (421)
.+|+++|.+|||||||+|+|++.+..+ .+.+.+|.......+... ...+.++||||+.+.... ...+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~~~~~~~~~~~~~~~ 75 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD--------DAQIIFVDTPGIHKPKKKLGERMVKA 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC--------CeEEEEEECCCCCcchHHHHHHHHHH
Confidence 479999999999999999999877543 555666665555444322 246899999998765322 1112233
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
....+..+|++++|+|++++... ....+.+.+.. .+.|+++|+||+|+...
T Consensus 76 ~~~~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~~ 126 (168)
T cd04163 76 AWSALKDVDLVLFVVDASEPIGE-GDEFILELLKK-----SKTPVILVLNKIDLVKD 126 (168)
T ss_pred HHHHHHhCCEEEEEEECCCccCc-hHHHHHHHHHH-----hCCCEEEEEEchhcccc
Confidence 45567889999999999876322 22334445544 25899999999999843
No 62
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.57 E-value=1.9e-14 Score=127.26 Aligned_cols=115 Identities=24% Similarity=0.212 Sum_probs=76.2
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.|+++|.+|||||||+++|++..... ...+.+|.+.....+.... ...+.+|||||+.+. ...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~~~DtpG~~~~-------~~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-------GKRLGFIDVPGHEKF-------IKN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-------CcEEEEEECCChHHH-------HHH
Confidence 58999999999999999999754322 2234667666554444321 247899999997432 233
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
....+..||++++|+|+++....+..+. ...++.. ..+|+++|+||+|+...
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~-~~~~~~~----~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREH-LEILELL----GIKRGLVVLTKADLVDE 119 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHH-HHHHHHh----CCCcEEEEEECccccCH
Confidence 4456778999999999976322222222 2233332 12589999999999764
No 63
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.57 E-value=2.2e-14 Score=125.04 Aligned_cols=126 Identities=25% Similarity=0.303 Sum_probs=78.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+|+|.+|||||||+++|++.+......| |.......+... ...+.++||||..+. ...+..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~--------~~~~~~~D~~g~~~~-------~~~~~~ 63 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKG--------NVTLKVWDLGGQPRF-------RSMWER 63 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEEC--------CEEEEEEECCCCHhH-------HHHHHH
Confidence 489999999999999999998754332222 222222222221 136899999997543 223345
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGI 417 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~l 417 (421)
++..+|++++|+|+++.........++..+... ....++|+++|+||+|+.......+.+..+
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 126 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSVDELIEQM 126 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCHHHHHHHh
Confidence 678899999999998754433332222222211 122468999999999987654433333333
No 64
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.57 E-value=2.1e-14 Score=127.26 Aligned_cols=120 Identities=17% Similarity=0.137 Sum_probs=80.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|++.+......+..+.+.....+... .....+.+|||||..+.. .....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~-------~~~~~ 68 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR------NKEVRVNFFDLSGHPEYL-------EVRNE 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC------CeEEEEEEEECCccHHHH-------HHHHH
Confidence 79999999999999999999876322111211112111122211 112478999999975431 11223
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC---CCCCCEEEEEeCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD---YLERPFIVVLNKIDLPE 406 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~---l~~kP~IIVlNK~Dl~~ 406 (421)
.+..+|++++|+|++++.+.+....+..++..+... ....|+++|+||+|+..
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 467899999999999877777777777777665432 24689999999999974
No 65
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.56 E-value=2.7e-14 Score=129.84 Aligned_cols=118 Identities=20% Similarity=0.163 Sum_probs=78.1
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|+|||||+++|+..+.. . ..+|.......+... ...+.++||||..+. ...+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~~--------~~~~~l~D~~G~~~~-------~~~~ 76 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-H--TSPTIGSNVEEIVYK--------NIRFLMWDIGGQESL-------RSSW 76 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-C--cCCccccceEEEEEC--------CeEEEEEECCCCHHH-------HHHH
Confidence 358999999999999999999876532 1 123443333333332 247899999997532 3334
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+++.||+++||+|+++..........+..+... ..+.+.|+++|+||+|+....
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~-~~~~~~p~viv~NK~Dl~~~~ 132 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAH-EDLRKAVLLVLANKQDLKGAM 132 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECCCCCCCC
Confidence 56678999999999998765443332222222111 123468999999999997643
No 66
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.56 E-value=2.1e-14 Score=128.85 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=80.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.+......+..+.+...-.+... .....+.+|||||..+. .....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~------~~~~~~~l~Dt~g~~~~-------~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN------DKRVKLQIWDTAGQERY-------RTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC------CEEEEEEEEECCChHHH-------HHHHH
Confidence 589999999999999999999876432222211111111111111 01246899999997543 12234
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+++.+|++++|+|+++..+.+.+..+..++..+.. ...|+++|+||+|+.+..
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMEDER 122 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCccc
Confidence 567899999999999887666666666666655432 358899999999997654
No 67
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.56 E-value=1.9e-14 Score=128.79 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=82.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|+|||||++++.+........+..+.+.....+.... ....+.++||||.... .....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~D~~G~~~~-------~~~~~ 69 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG------KTIKLQIWDTAGQERF-------RTITS 69 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCcHhH-------HHHHH
Confidence 5899999999999999999998764432223222222222222111 1246899999996542 11223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|+++.++...+..+..++..+.. .+.|+++|+||+|+....
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEEChhccccc
Confidence 456789999999999987777777777777766542 358999999999986543
No 68
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.56 E-value=2e-14 Score=129.25 Aligned_cols=122 Identities=16% Similarity=0.097 Sum_probs=82.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||++++++.+......+..+.+.....+.... ....+.++||||..... ...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~------~~~~l~l~D~~g~~~~~-------~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG------KKIKLQIWDTAGQERFR-------TIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC------EEEEEEEEeCCchHHHH-------HHH
Confidence 36899999999999999999998764332222221111111222111 12468999999965431 122
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+++.||++++|+|++++.+.+.+..+..++..+.. .+.|+++|+||+|+.+..
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS--EDVERMLVGNKCDMEEKR 124 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccccc
Confidence 3557889999999999887777776667776666532 468999999999998543
No 69
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.56 E-value=2.5e-14 Score=126.63 Aligned_cols=119 Identities=20% Similarity=0.140 Sum_probs=82.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|.+........+..+.+.....+.... ....+.++|+||..... .....
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~~-------~~~~~ 68 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDG------KRVKLQIWDTAGQERFR-------SITSS 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC------EEEEEEEEECCChHHHH-------HHHHH
Confidence 799999999999999999998765433333333332222222211 12368899999965431 11223
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+..||++++|+|++++.+.+.+..+..++..+.. .+.|+++|+||+|+...
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 69 YYRGAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccc
Confidence 45779999999999987766666666666666542 36899999999998763
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.55 E-value=3e-14 Score=125.50 Aligned_cols=121 Identities=20% Similarity=0.164 Sum_probs=79.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++++.+.. ..+..|+.+.....+..+. ....+.+|||||..+. .....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~l~~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDG------ETCLLDILDTAGQEEY-------SAMRD 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECC------EEEEEEEEECCCCcch-------HHHHH
Confidence 47999999999999999999976532 2333333222111121111 1135788999997542 11223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+++.+|++++|+|+++..+.+++..+...+..+. ...+.|+++|+||+|+....
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~ 122 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAART 122 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccce
Confidence 45678999999999998766666666666665543 12468999999999997643
No 71
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.55 E-value=2.7e-14 Score=133.69 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=82.1
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-cCchhHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRNFL 352 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-~~gl~~~fL 352 (421)
+|+|+|.+|||||||++++.+.+......|.++.+.....+..+. ....+.+|||||+.+.... .........
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~------~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~ 75 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSG------RVYDLHILDVPNMQRYPGTAGQEWMDPRF 75 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECC------EEEEEEEEeCCCcccCCccchhHHHHHHH
Confidence 789999999999999999987654332233332222111222111 1236889999998543210 000111123
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.||++++|+|++++++.+....+++++..+.. ...+.|+++|+||+|+...
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 457889999999999988777777767666655431 1246899999999999653
No 72
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=3.2e-14 Score=127.27 Aligned_cols=125 Identities=18% Similarity=0.101 Sum_probs=83.3
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+...+|+++|.+|||||||+++++.........+..+.+.....+.... ....+.++|+||..+. ..
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~D~~g~~~~-------~~ 71 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKG------EKIKLQIWDTAGQERF-------RS 71 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECC------EEEEEEEEECCCcHHH-------HH
Confidence 3457999999999999999999986543322223222233222232221 1235789999997543 12
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.....+..+|++++|+|+++..+.+....+..++..+.. ...|+++|+||+|+....+
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~ 129 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERRE 129 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccc
Confidence 223457889999999999876666666666666665432 3588999999999975544
No 73
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.55 E-value=2.7e-14 Score=127.77 Aligned_cols=121 Identities=15% Similarity=0.086 Sum_probs=80.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++..........+..+.+...-.+.... ....+.++||||.... .....
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~-------~~~~~ 70 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEG------KRVKLQIWDTAGQERF-------RTITQ 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECC------EEEEEEEEECCChHHH-------HHHHH
Confidence 6899999999999999999987653221111111122222222211 1236899999996442 11223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+..+|++++|+|++++.+.+....+..++..... .+.|+++|+||+|+....
T Consensus 71 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 71 SYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred HHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccccc
Confidence 456789999999999987766666666666655432 468999999999997553
No 74
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.55 E-value=2.2e-14 Score=158.03 Aligned_cols=122 Identities=27% Similarity=0.335 Sum_probs=91.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh--
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG-- 348 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~-- 348 (421)
..+|+++|.||||||||+|+|++.+.. +.++++||.++....+..+ +..+.++||||+.+......+..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~--------~~~~~liDTaG~~~~~~~~~~~e~~ 521 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID--------GEDWLFIDTAGIKRRQHKLTGAEYY 521 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC--------CCEEEEEECCCcccCcccchhHHHH
Confidence 479999999999999999999998864 4889999998877665543 24688999999875432211111
Q ss_pred --HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 --RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 --~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+.++++||++++|+|+++....++...+ ..+.. .++|+++|+||+|+.+.
T Consensus 522 ~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-----~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 522 SSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-----AGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEEchhcCCh
Confidence 1123557899999999999988776665533 33433 36899999999999764
No 75
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.55 E-value=3.7e-14 Score=125.86 Aligned_cols=119 Identities=22% Similarity=0.155 Sum_probs=81.2
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
+|+++|.+|||||||+++|++..... .+....+.......+.. ....+.++||||..+.. ...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~D~~g~~~~~-------~~~ 66 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDG--------KKVKLAIWDTAGQERFR-------TLT 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECC--------EEEEEEEEECCCchhhh-------hhh
Confidence 78999999999999999999876433 22222222222111211 12468999999965431 112
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...++.+|++++|+|++++.+.+....+.+++..+.. ..+.|+++|+||+|+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~ 122 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE 122 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc
Confidence 3446789999999999987777777777777766542 2468899999999998443
No 76
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.55 E-value=3.9e-14 Score=126.04 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=74.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|+|||||+++|+..+.. .+ .+|.......+... ..++.++||||..+. ...+..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~~~~ 62 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TT-IPTIGFNVETVTYK--------NLKFQVWDLGGQTSI-------RPYWRC 62 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--Cc-CCccCcCeEEEEEC--------CEEEEEEECCCCHHH-------HHHHHH
Confidence 5899999999999999999765432 11 22333333333322 247899999997543 223445
Q ss_pred hcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+++.+|++++|+|++++...... +.+...++.. ...++|+++|+||+|+..+.
T Consensus 63 ~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~Dl~~~~ 116 (158)
T cd04151 63 YYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE--ELKGAVLLVFANKQDMPGAL 116 (158)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch--hhcCCcEEEEEeCCCCCCCC
Confidence 67899999999999875432222 2222233221 22468999999999997654
No 77
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.55 E-value=3.9e-14 Score=127.15 Aligned_cols=116 Identities=21% Similarity=0.242 Sum_probs=75.7
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||++++...+.. .+ .+|.......+... ...+.+|||||..+. ...+..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~-~pt~g~~~~~~~~~--------~~~~~l~D~~G~~~~-------~~~~~~ 63 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYK--------NISFTVWDVGGQDKI-------RPLWRH 63 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--cc-CCCCCcceEEEEEC--------CEEEEEEECCCCHhH-------HHHHHH
Confidence 7999999999999999999754432 22 12222222223222 246899999997442 223345
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+++.||+++||+|+++....++...++..+... ......|+++|+||+|+.+..
T Consensus 64 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~ 117 (159)
T cd04150 64 YFQNTQGLIFVVDSNDRERIGEAREELQRMLNE-DELRDAVLLVFANKQDLPNAM 117 (159)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc-HHhcCCCEEEEEECCCCCCCC
Confidence 578999999999998766555444433333221 122458999999999997543
No 78
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.54 E-value=3.4e-14 Score=125.87 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=81.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++..... ...++.|+.+.....+..+. ....+.+|||||..+.. .+. .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~~---~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDG------QQCMLEILDTAGTEQFT----AMR---D 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhhEEEEEEECC------EEEEEEEEECCCccccc----hHH---H
Confidence 4799999999999999999987542 22333333222222222211 12357899999975431 122 2
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.+|++++|+|+++..+.++...+.+++..+.. ..+.|+++|+||+|+...
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDE 121 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 346789999999999987777777777777766432 246899999999999754
No 79
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.54 E-value=4.9e-14 Score=132.93 Aligned_cols=122 Identities=14% Similarity=0.070 Sum_probs=83.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|+.........|..+.+.....+..+.. ....+.||||||.... ..+ +-.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~-----~~~~~~i~Dt~G~~~~----~~l---~~~ 69 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGN-----LNVTLQVWDIGGQSIG----GKM---LDK 69 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCC-----CEEEEEEEECCCcHHH----HHH---HHH
Confidence 7899999999999999999876533222333334443333332210 1247899999996432 112 223
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kP~IIVlNK~Dl~~~ 407 (421)
++..||++|+|+|++++.+.+....+..++..+... ....|+++|+||+|+...
T Consensus 70 ~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~ 124 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN 124 (215)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence 467899999999999887777777777777765432 234678999999999754
No 80
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.3e-14 Score=155.11 Aligned_cols=118 Identities=32% Similarity=0.475 Sum_probs=96.2
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccc--cccccCchhHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE--GAHLGKGLGRNF 351 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie--~a~~~~gl~~~f 351 (421)
+|+++|.||+|||||+|+||+++..+++||+.|.+-..|.+... +.++.++|+||..+ ..++++.+.++|
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~--------~~~i~ivDLPG~YSL~~~S~DE~Var~~ 76 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK--------GHEIEIVDLPGTYSLTAYSEDEKVARDF 76 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec--------CceEEEEeCCCcCCCCCCCchHHHHHHH
Confidence 59999999999999999999999999999999999999998865 34799999999875 335567777777
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+.. ++.|+++.|+|+++- +..+....+.++ .++|+++++|++|..+.+
T Consensus 77 ll~-~~~D~ivnVvDAtnL--eRnLyltlQLlE------~g~p~ilaLNm~D~A~~~ 124 (653)
T COG0370 77 LLE-GKPDLIVNVVDATNL--ERNLYLTLQLLE------LGIPMILALNMIDEAKKR 124 (653)
T ss_pred Hhc-CCCCEEEEEcccchH--HHHHHHHHHHHH------cCCCeEEEeccHhhHHhc
Confidence 663 678999999999863 334443444444 579999999999987654
No 81
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.54 E-value=4.4e-14 Score=127.75 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=77.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|++... .. ..+|.......+... ...+.++||||..+. ...+..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~--------~~~i~l~Dt~G~~~~-------~~~~~~ 62 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYK--------NLKFTIWDVGGKHKL-------RPLWKH 62 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEEC--------CEEEEEEECCCChhc-------chHHHH
Confidence 588999999999999999998642 12 234443333333332 247899999997543 223445
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+++.+|+++||+|++++...++...++.++... ....+.|+++|+||+|+...
T Consensus 63 ~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 63 YYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTE-KELRDALLLIFANKQDVAGA 115 (169)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcC-hhhCCCCEEEEEeCcCcccC
Confidence 678899999999999765555444433333221 12245799999999999754
No 82
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.54 E-value=3.1e-14 Score=157.58 Aligned_cols=121 Identities=28% Similarity=0.441 Sum_probs=89.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~ 350 (421)
.+|+++|.||||||||+|+|++.+..++++|++|.+...+.+... +.++.++||||+.+.... ...+.+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--------~~~i~lvDtPG~ysl~~~~~~~s~~E~ 75 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--------DHQVTLVDLPGTYSLTTISSQTSLDEQ 75 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--------ceEEEEEECCCccccccccccccHHHH
Confidence 479999999999999999999998888999999999888887653 247999999999764321 1122222
Q ss_pred HHH-h--cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 351 FLR-H--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 351 fL~-~--i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..+ + .+.+|++++|+|+++.+ .+. .+..++.+ .++|+++|+||+|+.+...
T Consensus 76 i~~~~l~~~~aD~vI~VvDat~le--r~l-~l~~ql~e-----~giPvIvVlNK~Dl~~~~~ 129 (772)
T PRK09554 76 IACHYILSGDADLLINVVDASNLE--RNL-YLTLQLLE-----LGIPCIVALNMLDIAEKQN 129 (772)
T ss_pred HHHHHHhccCCCEEEEEecCCcch--hhH-HHHHHHHH-----cCCCEEEEEEchhhhhccC
Confidence 211 1 25799999999998643 222 24445544 4689999999999875443
No 83
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.54 E-value=8.6e-14 Score=119.93 Aligned_cols=121 Identities=33% Similarity=0.404 Sum_probs=88.2
Q ss_pred ccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhc
Q 014655 277 LVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 355 (421)
Q Consensus 277 LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i 355 (421)
++|.+|+|||||+++|++.... +.+++.+|.......+.... ...+.++||||+.+...........+...+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-------LGPVVLIDTPGIDEAGGLGREREELARRVL 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-------CCcEEEEECCCCCccccchhhHHHHHHHHH
Confidence 5899999999999999988765 57777778776665554321 247999999999876554433334555667
Q ss_pred ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655 356 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 356 ~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
..+|++++|+|++......... +...... ...|+++|+||+|+....+.
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~-~~~~~~~-----~~~~~ivv~nK~D~~~~~~~ 122 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEK-LLELLRE-----RGKPVLLVLNKIDLLPEEEE 122 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCeEEEEEEccccCChhhH
Confidence 8899999999999876544433 2333332 46899999999999876543
No 84
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.54 E-value=3.8e-14 Score=125.96 Aligned_cols=121 Identities=17% Similarity=0.042 Sum_probs=81.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|.+.+......+..+.+.....+.... ....+.+|||||..+.. ....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~l~D~~G~~~~~-------~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG------KRVKLQIWDTAGQERFR-------SVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC------EEEEEEEEECcchHHHH-------HhHH
Confidence 3789999999999999999998764332222222211111222111 12468999999975431 1223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+++.+|++++|+|++++...+.+..+..++..+.. .+.|+++|+||+|+....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLADQR 121 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcchhc
Confidence 456789999999999987777666666666654432 468999999999997643
No 85
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=3.7e-14 Score=131.00 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=83.4
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce-eecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG-RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g-~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
+|+++|.+|||||||++++...+.....++.|+...... .+..+. ....+.||||||.... .....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~~ 68 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDG------VKVKLQIWDTAGQERF-------RSVTH 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECC------EEEEEEEEeCCCcHHH-------HHhhH
Confidence 789999999999999999998776544454444322111 122111 1246899999996432 11223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+..+|++++|+|+++..+++++..+...+..+.. ...|+++|+||+|+...
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~ 121 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGE 121 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhc
Confidence 456789999999999987777777777777776543 36899999999999643
No 86
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=2.9e-14 Score=133.05 Aligned_cols=123 Identities=30% Similarity=0.320 Sum_probs=90.8
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC--CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc--cc---
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HL--- 343 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a--~~--- 343 (421)
..+.|+|+|.+|||||||||+|++.+ ++++..|+.|..++...+. ..+.++|+||+--.. .+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-----------~~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-----------DELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-----------CcEEEEeCCCcccccCCHHHHH
Confidence 45689999999999999999999987 6779999999998877664 348999999974321 10
Q ss_pred -cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655 344 -GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 344 -~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
...+...|++.=+.-.++++++|+.++....|. .+.++|.. .+.|++||+||+|.....+.
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~-----~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE-----LGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH-----cCCCeEEEEEccccCChhHH
Confidence 111222333333446788999999886555454 45566666 46999999999999886554
No 87
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.54 E-value=5.3e-14 Score=123.92 Aligned_cols=120 Identities=19% Similarity=0.154 Sum_probs=81.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|+|||||+++|.+........+.++.......+... .....+.++|+||..... .+.. .
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~g~~~~~----~~~~---~ 68 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG------GKRIDLAIWDTAGQERYH----ALGP---I 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC------CEEEEEEEEECCchHHHH----HhhH---H
Confidence 78999999999999999999876543222222222212222211 112368999999965431 1222 2
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+..+|++++|+|+++.+..++...+.+++..+... +.|+++|+||+|+....
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQR 121 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccccc
Confidence 346799999999999887777777777777776542 68999999999997543
No 88
>PRK04213 GTP-binding protein; Provisional
Probab=99.53 E-value=6.9e-14 Score=129.60 Aligned_cols=119 Identities=27% Similarity=0.268 Sum_probs=78.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc----cCchh
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL----GKGLG 348 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~----~~gl~ 348 (421)
.+|+++|.+|||||||+|+|++........|++|..+....+ ..+.+|||||+...... .+.+.
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~------------~~~~l~Dt~G~~~~~~~~~~~~~~~~ 77 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDW------------GDFILTDLPGFGFMSGVPKEVQEKIK 77 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEee------------cceEEEeCCccccccccCHHHHHHHH
Confidence 589999999999999999999987666778888876543221 15899999996321110 01111
Q ss_pred H---HHH-HhcccCCEEEEEeeCCCCCC----h------hhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 349 R---NFL-RHLRRTRLLVHVIDAAAENP----V------NDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 349 ~---~fL-~~i~radvIl~VvD~s~~~~----~------~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
. .++ +.+..++++++|+|++.... + .....+...+.. .++|+++|+||+|+....
T Consensus 78 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 78 DEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred HHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcH
Confidence 1 122 24556789999999865211 1 011223444443 368999999999997543
No 89
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.53 E-value=7.5e-14 Score=124.24 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=81.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCC-CCccCCCCeee-eccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl-~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
++|+++|.++||||||+++|.... ....+|..|+- +...-.+.... .....+.+|||||..... .+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~----~~--- 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDT-----DNTVELFIFDSAGQELYS----DM--- 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCC-----CCEEEEEEEECCCHHHHH----HH---
Confidence 379999999999999999998642 23345554442 21111121110 113579999999964431 12
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+++++|++++|+|+++..+.+.+..+.+.+..+. .+.|+++|+||+|+....
T Consensus 69 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKA 123 (164)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc
Confidence 2345789999999999998776666666666666543 468999999999997553
No 90
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.53 E-value=7.2e-14 Score=123.85 Aligned_cols=116 Identities=28% Similarity=0.281 Sum_probs=74.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++++..+.. ... +|.......+.... ...+.++||||..+. ...+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~--~t~~~~~~~~~~~~-------~~~l~i~D~~G~~~~-------~~~~~~ 63 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTI--PTVGFNVEMLQLEK-------HLSLTVWDVGGQEKM-------RTVWKC 63 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-ccc--CccCcceEEEEeCC-------ceEEEEEECCCCHhH-------HHHHHH
Confidence 4889999999999999999987632 111 12211122222111 247999999997432 233455
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
++..+|++++|+|++++........+..++... ....+.|+++|+||+|+...
T Consensus 64 ~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~ 116 (160)
T cd04156 64 YLENTDGLVYVVDSSDEARLDESQKELKHILKN-EHIKGVPVVLLANKQDLPGA 116 (160)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHhc-hhhcCCCEEEEEECcccccC
Confidence 688999999999998765444443333332221 12246899999999999654
No 91
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.53 E-value=6.3e-14 Score=124.16 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=76.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||++++++.... .+ .+|.......+... ...+.+|||||.... ...+..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~D~~G~~~~-------~~~~~~ 62 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--TT-IPTIGFNVETVEYK--------NVSFTVWDVGGQDKI-------RPLWKH 62 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--CC-CCCcCcceEEEEEC--------CEEEEEEECCCChhh-------HHHHHH
Confidence 5899999999999999999988632 11 22222222223222 246899999997653 222344
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+..+|++++|+|++++........++..+.... .....|+++|+||+|+....
T Consensus 63 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 63 YYENTNGIIFVVDSSDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCcccc
Confidence 5678999999999997654444433333332211 13578999999999998654
No 92
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.53 E-value=5.5e-14 Score=124.72 Aligned_cols=121 Identities=20% Similarity=0.136 Sum_probs=80.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|+|||||++++.+... ...++.|+.+.....+... .....+.++||||..+. .....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~-------~~~~~ 68 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEID------GQWAILDILDTAGQEEF-------SAMRE 68 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEEC------CEEEEEEEEECCCCcch-------hHHHH
Confidence 4899999999999999999987543 3344444332211111111 11236889999997543 11223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.++..+|++++|+|+++..+.+....+..++.... ...+.|+++|+||+|+....
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piiiv~NK~Dl~~~~ 123 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVK-DRDEFPMILVGNKADLEHQR 123 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCCEEEEeeCccccccc
Confidence 45678999999999998766666666665555432 12468999999999997643
No 93
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.52 E-value=6.7e-14 Score=125.53 Aligned_cols=120 Identities=19% Similarity=0.107 Sum_probs=81.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc-ceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|+++|.+|||||||++++...+. ...++.|+.... .-.+.... ....+.+|||||..+. ....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVNG------QKIKLQIWDTAGQERF-------RAVT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCcccceeEEEEEEEECC------EEEEEEEEECCCcHHH-------HHHH
Confidence 5899999999999999999987643 233443322111 11111111 1246899999997543 2223
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+++.+|++++|+|++++.+.+.+..+..++..... .+.|+++|+||+|+....
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~~ 123 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQR 123 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc
Confidence 4557889999999999987776766666666654432 357899999999997654
No 94
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.52 E-value=1e-13 Score=127.07 Aligned_cols=117 Identities=26% Similarity=0.342 Sum_probs=79.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
-.+|+++|.+|||||||+++|++.+.. . ..+|..+..+.+... +..+.++||||.... ...+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~--~-~~~T~~~~~~~i~~~--------~~~~~l~D~~G~~~~-------~~~~ 80 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA--Q-HVPTLHPTSEELTIG--------NIKFKTFDLGGHEQA-------RRLW 80 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccCcceEEEEEC--------CEEEEEEECCCCHHH-------HHHH
Confidence 368999999999999999999986642 1 223555555555443 246899999996442 1234
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+++.+|++++|+|+++....+.......++... ....+.|+++|+||+|+...
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGA 135 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCC
Confidence 45678899999999998764443333333333221 12346899999999999754
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.52 E-value=8.8e-14 Score=126.21 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=74.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|+..+.. .+. +|.......+... ...+.+|||||.... ...+.
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~--~~~-~t~g~~~~~~~~~--------~~~~~l~Dt~G~~~~-------~~~~~ 71 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSV--TTI-PTVGFNVETVTYK--------NVKFNVWDVGGQDKI-------RPLWR 71 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCc--ccc-CCcccceEEEEEC--------CEEEEEEECCCCHHH-------HHHHH
Confidence 58999999999999999999865421 121 1221222222221 247999999997542 22233
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++..||+++||+|++++...+....++.++.. .....+.|+++|+||+|+.+.
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~-~~~~~~~piilv~NK~Dl~~~ 125 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIIN-DREMRDALLLVFANKQDLPDA 125 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHHHHHHHHHHhc-CHhhcCCcEEEEEECcCCccC
Confidence 457889999999999986555444333222211 111246899999999999754
No 96
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.52 E-value=6.4e-14 Score=123.15 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=84.1
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|++.. ....+..++.+.....+.... ....+.++|+||..+. ......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~-------~~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDG------ETYTLDILDTAGQEEF-------SAMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECC------EEEEEEEEECCChHHH-------HHHHHH
Confidence 58899999999999999999776 445555555544333333221 1246899999997653 112234
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++.+|++++|+|++++.+..+...++..+...... ...|+++|+||+|+...
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENE 119 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCccccc
Confidence 567899999999999877666666666666554321 36899999999999863
No 97
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.52 E-value=8.3e-14 Score=123.50 Aligned_cols=120 Identities=18% Similarity=0.093 Sum_probs=78.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|+|||||+++++.........+..+.+.....+..... .....+.+|||||..+.. .....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~i~D~~G~~~~~-------~~~~~ 70 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQS----DEDVRLMLWDTAGQEEFD-------AITKA 70 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCC----CCEEEEEEeeCCchHHHH-------HhHHH
Confidence 7999999999999999999986532211121112211112221100 112468999999965431 12334
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+++.+|++++|+|++++++.+.+..+..++... ..+.|+++|+||+|+...
T Consensus 71 ~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 71 YYRGAQACILVFSTTDRESFEAIESWKEKVEAE---CGDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhcccc
Confidence 578899999999999876666665555555542 246899999999999754
No 98
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.52 E-value=1.7e-14 Score=148.67 Aligned_cols=124 Identities=27% Similarity=0.412 Sum_probs=97.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH---
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR--- 349 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~--- 349 (421)
..+.|+|+||+|||||+|.++.+++.+.+|+|||..-..|++++. | -+++++||||+.+..-++.....
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk-------Y-lrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK-------Y-LRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh-------e-eeeeecCCccccCcchhhhhHHHHHH
Confidence 367899999999999999999999999999999998888887754 2 37899999999987665543322
Q ss_pred -HHHHhcccCCEEEEEeeCCC--CCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 350 -NFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 -~fL~~i~radvIl~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..+.|++. ++||+.|.|. +.+.++...|.+.++-+ +.++|+|+|+||+|+...++
T Consensus 241 ITALAHLra--aVLYfmDLSe~CGySva~QvkLfhsIKpL---FaNK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 241 ITALAHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKPL---FANKVTILVLNKIDAMRPED 298 (620)
T ss_pred HHHHHHhhh--hheeeeechhhhCCCHHHHHHHHHHhHHH---hcCCceEEEeecccccCccc
Confidence 35778875 5899999986 34455555566655543 36899999999999987654
No 99
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.51 E-value=1.2e-13 Score=123.97 Aligned_cols=122 Identities=20% Similarity=0.133 Sum_probs=79.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|+|||||++++.+........+..+.+.....+.... ....+.+|||||..+.. ....
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~~-------~~~~ 72 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG------HFVTLQIWDTAGQERFR-------SLRT 72 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECC------eEEEEEEEeCCChHHHH-------HhHH
Confidence 6899999999999999999987654322222111111111222111 12468899999965431 1223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC--CCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.+|++++|+|+++.++.+.+..+..++..+... ..+.|+++|+||+|+...
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (170)
T cd04116 73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER 129 (170)
T ss_pred HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc
Confidence 4568899999999999877777666666665543321 245899999999999743
No 100
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.51 E-value=1.2e-13 Score=128.55 Aligned_cols=121 Identities=19% Similarity=0.143 Sum_probs=80.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|..........|....+.....+..+. .....+.+|||||.... ......
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~-----~~~~~l~l~Dt~G~~~~-------~~~~~~ 69 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDP-----NTVVRLQLWDIAGQERF-------GGMTRV 69 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-----CCEEEEEEEECCCchhh-------hhhHHH
Confidence 799999999999999999997653222122212222222222220 01246899999997432 122334
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~ 406 (421)
+++.+|++++|+|++++.+.+....+..++.... ....+.|+++|+||+|+.+
T Consensus 70 ~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 70 YYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 5788999999999998877777766666665431 1224689999999999973
No 101
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.51 E-value=1e-13 Score=123.86 Aligned_cols=120 Identities=21% Similarity=0.162 Sum_probs=75.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|.+........+..+.+.....+.... ....+.++|+||..... .....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~D~~g~~~~~-------~~~~~ 68 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD------KLVTLQIWDTAGQERFQ-------SLGVA 68 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC------EEEEEEEEeCCChHHHH-------hHHHH
Confidence 799999999999999999998763321111111111111121111 12357899999975431 12335
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHh-cCC-CCCCCCEEEEEeCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNP-DYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~-~~~-~l~~kP~IIVlNK~Dl~~ 406 (421)
.++.||++|+|+|++++...+....+.+++.. ... ...+.|+++|+||+|+..
T Consensus 69 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 69 FYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 57889999999999876655555555444332 211 123689999999999974
No 102
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.51 E-value=9.5e-14 Score=124.43 Aligned_cols=115 Identities=23% Similarity=0.180 Sum_probs=77.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee--ecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR--LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~--v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
+|+++|.+|||||||++++...+.... +..| ..+.... +..+ .....+.+|||||.... ....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~-------~~~~ 66 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ-QLST-YALTLYKHNAKFE------GKTILVDFWDTAGQERF-------QTMH 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-cCCc-eeeEEEEEEEEEC------CEEEEEEEEeCCCchhh-------hhhh
Confidence 789999999999999999987653221 1111 1111111 1111 11246889999997543 1122
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..+++.+|++++|+|++++.+.++...+..++.... .+.|+++|+||+|+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDP 118 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCch
Confidence 345788999999999998777667666777776543 3689999999999853
No 103
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.51 E-value=8.6e-14 Score=127.80 Aligned_cols=121 Identities=26% Similarity=0.279 Sum_probs=83.6
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC--CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-----
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL----- 343 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~----- 343 (421)
..++|+++|.+|||||||+|+|++.+ ..+++.+++|.......+ ..++.++||||+......
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-----------~~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-----------NDKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-----------CCeEEEeCCCCCCCcCCCchHHH
Confidence 55789999999999999999999865 345667777776544332 136999999997542110
Q ss_pred -cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 344 -GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 344 -~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+...++++.+.++++++|+|++.+....+. .+..++.. .+.|+++|+||+|+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~-----~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE-----YGIPVLIVLTKADKLKKG 151 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH-----cCCcEEEEEECcccCCHH
Confidence 112333455666677899999998865443332 23445543 468899999999997654
No 104
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.51 E-value=3e-14 Score=139.63 Aligned_cols=127 Identities=27% Similarity=0.284 Sum_probs=97.6
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc----
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG---- 344 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~---- 344 (421)
.....|++||.||||||||.|.+.+.+... +..+.||.....|++..+ ..++++.||||++...+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~--------eTQlvf~DTPGlvs~~~~r~~~l 141 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG--------ETQLVFYDTPGLVSKKMHRRHHL 141 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC--------ceEEEEecCCcccccchhhhHHH
Confidence 345589999999999999999999998765 788899999999998765 3489999999999754321
Q ss_pred -CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 345 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 345 -~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..+.......+++||+++.|+|+++....-. -.++..|+.| ...|-++|+||+|......
T Consensus 142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y----s~ips~lvmnkid~~k~k~ 202 (379)
T KOG1423|consen 142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY----SKIPSILVMNKIDKLKQKR 202 (379)
T ss_pred HHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH----hcCCceeeccchhcchhhh
Confidence 1122334567889999999999996322211 2366778877 4689999999999887654
No 105
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.51 E-value=1.2e-13 Score=124.85 Aligned_cols=113 Identities=23% Similarity=0.241 Sum_probs=76.4
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccC----------------CCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~----------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl 337 (421)
+|+++|.+|||||||+|+|++....... ...+|.+.....+... ...+.++||||+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~liDtpG~ 72 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--------DRRVNFIDTPGH 72 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--------CEEEEEEeCCCc
Confidence 4889999999999999999887643311 1223333333333221 247899999997
Q ss_pred cccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 338 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 338 ie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+. ...+...+..+|++++|+|++.+......+ +...+.. .+.|+++|+||+|+...
T Consensus 73 ~~~-------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~~i~iv~nK~D~~~~ 129 (189)
T cd00881 73 EDF-------SSEVIRGLSVSDGAILVVDANEGVQPQTRE-HLRIARE-----GGLPIIVAINKIDRVGE 129 (189)
T ss_pred HHH-------HHHHHHHHHhcCEEEEEEECCCCCcHHHHH-HHHHHHH-----CCCCeEEEEECCCCcch
Confidence 543 233455677899999999998765443333 3333433 46899999999999864
No 106
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.51 E-value=5.2e-14 Score=125.94 Aligned_cols=121 Identities=20% Similarity=0.234 Sum_probs=80.9
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||++++..... ...|+.|+.......+..+ .....+.+|||||..... ......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~~~i~D~~g~~~~~------~~~~~~ 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTID------GEQVSLEILDTAGQQQAD------TEQLER 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEEC------CEEEEEEEEECCCCcccc------cchHHH
Confidence 588999999999999999986432 2344444422111111111 012368899999986421 011234
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+..+|++++|+|++++.+.+....+..++..+.....+.|+++|+||+|+...
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 567899999999999887777777777777665422246899999999998643
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.51 E-value=1.5e-13 Score=126.19 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=76.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++...+. +..+|..........+.... .....+.+|||||.... ...+.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~~-------~~~~~ 70 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGN-----SKGITFHFWDVGGQEKL-------RPLWK 70 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccC-----CCceEEEEEECCCcHhH-------HHHHH
Confidence 4799999999999999999987543 22232221111111121110 11247899999996432 22233
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.||+++||+|+++..+.+....+..++..+.. ..++|+++|+||+|+...
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~ 124 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNA 124 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcccc
Confidence 446789999999999876555555444444444322 246899999999998753
No 108
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.50 E-value=1.5e-13 Score=123.98 Aligned_cols=116 Identities=22% Similarity=0.249 Sum_probs=75.4
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
.|+++|.+|||||||++++.+.... ..+.. |.......+.. ...++.+|||||..+. ...+..
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~-~~~~p-t~g~~~~~i~~--------~~~~l~i~Dt~G~~~~-------~~~~~~ 63 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL-ESVVP-TTGFNSVAIPT--------QDAIMELLEIGGSQNL-------RKYWKR 63 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc-ccccc-cCCcceEEEee--------CCeEEEEEECCCCcch-------hHHHHH
Confidence 3789999999999999999976432 22221 11111112221 1347899999997442 223446
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
+++.||+++||+|+++.......+.++.++.. ...+.|+++|+||+|+.....
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~~~~ 116 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPAARS 116 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcCCCC
Confidence 68899999999999876544444333333322 124799999999999976543
No 109
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.50 E-value=1.4e-13 Score=125.51 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=79.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++...+. . ++. .|.......+... ...+.+|||||.... ...+.
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~-~~~-~t~~~~~~~~~~~--------~~~l~l~D~~G~~~~-------~~~~~ 75 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES-V-TTI-PTIGFNVETVTYK--------NISFTVWDVGGQDKI-------RPLWR 75 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-C-CcC-CccccceEEEEEC--------CEEEEEEECCCChhh-------HHHHH
Confidence 6899999999999999999965432 1 121 1222222222221 246899999997543 22234
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
.+++.||++|||+|++++...++...++..+.. .....+.|++||+||+|+.+.....+..+.+++
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~ 141 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLN-EDELRDAVILVFANKQDLPDAMKAAEITEKLGL 141 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhh-CHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCc
Confidence 457899999999999976655544433333321 112245899999999999765433333344443
No 110
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.50 E-value=1.3e-13 Score=122.67 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=78.1
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||++++.+.... ..+..|+.+...-.+..+. ....+.+|||||..+.. .+ ...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~~----~~---~~~ 67 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV-DDYDPTIEDSYRKQIEIDG------EVCLLDILDTAGQEEFS----AM---RDQ 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-cccCCchhhhEEEEEEECC------EEEEEEEEECCCcccch----HH---HHH
Confidence 7999999999999999999976532 2233333221111111110 12468899999975531 12 223
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
++..+|++++|+|++++.+.+....+...+..... ..+.|+++|+||+|+...
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESE 120 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 46789999999999987666666665555544321 136899999999999764
No 111
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.50 E-value=1.4e-13 Score=124.39 Aligned_cols=118 Identities=21% Similarity=0.218 Sum_probs=75.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccC---------------CCCeeeeccceeecCCCCCCccccccceEEecCCccc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 338 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGli 338 (421)
.|+++|.+|+|||||+++|++....+.. ..++|..+....+.+... ......+.+|||||+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~ 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAK---DGQEYLLNLIDTPGHV 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecC---CCCcEEEEEEECCCCh
Confidence 6899999999999999999875432211 112233322222211000 0113468899999986
Q ss_pred ccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 339 e~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+. ......++..+|++++|+|+++....+++..+.... . .++|+++|+||+|+...
T Consensus 79 ~~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~-----~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 79 DF-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E-----NNLEIIPVINKIDLPSA 134 (179)
T ss_pred hh-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H-----cCCCEEEEEECCCCCcC
Confidence 53 223445678899999999998765555554443322 2 35899999999998653
No 112
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.50 E-value=8.1e-14 Score=128.63 Aligned_cols=120 Identities=15% Similarity=0.101 Sum_probs=80.7
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|...... ..++.|+.+.....+..+. ....+.+|||||..+.. .....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~-------~~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDG------QPCMLEVLDTAGQEEYT-------ALRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECC------EEEEEEEEECCCchhhH-------HHHHH
Confidence 4889999999999999999865432 2344443222111121111 12358899999975431 11234
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kP~IIVlNK~Dl~~~ 407 (421)
++..+|++++|+|+++..+++.+..+++.+...... ..+.|+++|+||+|+...
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~ 121 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE 121 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc
Confidence 577899999999999877777777777777654321 246899999999999653
No 113
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.50 E-value=1e-13 Score=123.77 Aligned_cols=120 Identities=20% Similarity=0.211 Sum_probs=79.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++.... .+..++.|+.+.....+.... ....+.+|||||..... .+. .
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~~---~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDG------QQCMLEILDTAGTEQFT----AMR---D 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheEEEEEEECC------EEEEEEEEECCCcccch----hHH---H
Confidence 479999999999999999998653 233444444322222222211 12357899999975431 122 2
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.+|++++|+|+++..+.+....+..++..+. ...+.|+++|+||+|+...
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhc
Confidence 34677999999999987766666666666665432 2246899999999999754
No 114
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.50 E-value=1.6e-13 Score=123.90 Aligned_cols=123 Identities=20% Similarity=0.099 Sum_probs=81.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|+|||||+++++.........+....+.....+.... ....+.+|||||..+... .+ ..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~---~~---~~ 70 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG------ERIKVQLWDTAGQERFRK---SM---VQ 70 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC------eEEEEEEEeCCChHHHHH---hh---HH
Confidence 5899999999999999999987553211111111111111222111 124789999999754210 11 22
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|++++.+.+....+.+++..+.. ..+.|+++|+||+|+....
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~ 125 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQI 125 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhc
Confidence 345789999999999988877777777777766532 2468999999999987544
No 115
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.49 E-value=1.8e-13 Score=125.91 Aligned_cols=126 Identities=21% Similarity=0.278 Sum_probs=81.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++++..+.. .+ .+|...+...+... ...+.+|||||..+. ...+.
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~--~~-~pt~g~~~~~~~~~--------~~~~~i~D~~Gq~~~-------~~~~~ 79 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYK--------NISFTVWDVGGQDKI-------RPLWR 79 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc--cc-cCCcceeEEEEEEC--------CEEEEEEECCCCHHH-------HHHHH
Confidence 58999999999999999999864421 12 12222222222221 246899999996432 22344
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
.+++.||++|||+|+++.+..++. ..++..+. ....+.|++||+||+|+....+..+....+++
T Consensus 80 ~~~~~a~~iI~V~D~s~~~s~~~~---~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l 145 (181)
T PLN00223 80 HYFQNTQGLIFVVDSNDRDRVVEA---RDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145 (181)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHH---HHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCc
Confidence 557889999999999976654433 33333321 12346899999999999876554444444554
No 116
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.49 E-value=2.2e-13 Score=123.31 Aligned_cols=117 Identities=22% Similarity=0.284 Sum_probs=75.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.... .+. .|.......+... ...+.+|||||.... ...+.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~--------~~~l~l~D~~G~~~~-------~~~~~ 76 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYE--------GYKLNIWDVGGQKTL-------RPYWR 76 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEEC--------CEEEEEEECCCCHHH-------HHHHH
Confidence 57999999999999999999976432 111 1111111122221 246899999997542 22234
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+++.+|++++|+|++++.+.+....+...+... ....+.|+++|+||+|+....
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~Dl~~~~ 131 (173)
T cd04154 77 NYFESTDALIWVVDSSDRLRLDDCKRELKELLQE-ERLAGATLLILANKQDLPGAL 131 (173)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcccccCC
Confidence 5678999999999998865555443333333221 122468999999999997643
No 117
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.49 E-value=1.8e-13 Score=122.76 Aligned_cols=121 Identities=15% Similarity=0.136 Sum_probs=79.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++++.+... .+..|+-......+... .-...+.++||||..+.. .+ ..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~----~~---~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCS------KNICTLQITDTTGSHQFP----AM---QR 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCcchheEEEEEEEC------CEEEEEEEEECCCCCcch----HH---HH
Confidence 479999999999999999999765322 11111111111111111 012468999999976532 11 12
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++..+|++++|+|+++..+.+....+++.+..+.. ...+.|+++|+||+|+...
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 123 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK 123 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc
Confidence 345789999999999988777777777776665432 2246899999999999763
No 118
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.49 E-value=1.6e-13 Score=127.74 Aligned_cols=124 Identities=18% Similarity=0.094 Sum_probs=83.5
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccC--CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH--
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-- 349 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~--~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~-- 349 (421)
+|+|||.||||||||+|+|++.+..... .+.+|.....+..... +.++.++||||+.+.......+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--------~~~i~viDTPG~~d~~~~~~~~~~~i 73 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--------GRRVNVIDTPGLFDTSVSPEQLSKEI 73 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--------CeEEEEEECcCCCCccCChHHHHHHH
Confidence 6899999999999999999998765433 3456666655544332 357999999999876432222222
Q ss_pred --HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHh-cCCCCCCCCEEEEEeCCCCCCCC
Q 014655 350 --NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM-YNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 350 --~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~-~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+.......|++|||+|+.. ...++.. +.+.+.. +.. ..-+++++|+|++|.....
T Consensus 74 ~~~~~~~~~g~~~illVi~~~~-~t~~d~~-~l~~l~~~fg~-~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 74 VRCLSLSAPGPHAFLLVVPLGR-FTEEEEQ-AVETLQELFGE-KVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred HHHHHhcCCCCEEEEEEEECCC-cCHHHHH-HHHHHHHHhCh-HhHhcEEEEEECccccCCC
Confidence 22233467899999999876 4444444 4444443 332 2236889999999987654
No 119
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.48 E-value=2.6e-13 Score=124.61 Aligned_cols=121 Identities=17% Similarity=0.067 Sum_probs=81.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++++........+..+.+.....+..+. ....+.+|||||..+. .....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~g~~~~-------~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIEN------KIIKLQIWDTNGQERF-------RSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC------EEEEEEEEECCCcHHH-------HhhHH
Confidence 3799999999999999999997654321112111121111222111 1246789999996543 11234
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|++++.+.+.+..|..++..+.. ...|+++|+||+|+.+..
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNK 121 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccc
Confidence 567889999999999987777777777777766543 347899999999997543
No 120
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.48 E-value=3.4e-14 Score=140.16 Aligned_cols=131 Identities=32% Similarity=0.310 Sum_probs=103.5
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
+-...+-|++|||+|||||||+++|+.+.....+..|.|+||......... +..+.+.||-|++.. ...+|
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-------g~~vlltDTvGFisd--LP~~L 244 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-------GNFVLLTDTVGFISD--LPIQL 244 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-------CcEEEEeechhhhhh--CcHHH
Confidence 445667899999999999999999997766668899999999765544331 346899999999986 45667
Q ss_pred hHHH---HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC--CCCCCEEEEEeCCCCCCC
Q 014655 348 GRNF---LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 348 ~~~f---L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kP~IIVlNK~Dl~~~ 407 (421)
..+| |+++..+|+|++|+|+++|+..++.+.++..|...+-. .....++-|-||+|..+.
T Consensus 245 vaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 245 VAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred HHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 7666 67778899999999999999888888888888876521 112337789999998654
No 121
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.48 E-value=2.7e-13 Score=120.38 Aligned_cols=117 Identities=18% Similarity=0.118 Sum_probs=77.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.+|+++|.+|||||||+++|.+.+... .+..+.+.......+.. ....+.+||+||..+.. ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~--------~~~~~~i~D~~G~~~~~-------~~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD--------TTVKFEIWDTAGQERYR-------SL 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC--------EEEEEEEEeCCchHHHH-------HH
Confidence 479999999999999999999876432 22222111111111211 13468999999964321 11
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
....++.+|++++|+|++++.+.+....+...+..... ...|+++|+||+|+..
T Consensus 67 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 120 (163)
T cd01860 67 APMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES 120 (163)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 12346789999999999987666666666666655331 4688999999999874
No 122
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.48 E-value=1.8e-13 Score=125.93 Aligned_cols=119 Identities=16% Similarity=0.105 Sum_probs=79.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc-ceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|+++|.+|+|||||+++|+..+....+|..|+-... ...+.... ....+.+|||||..+.. .+.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~~----~~~--- 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGE------RVVTLGIWDTAGSERYE----AMS--- 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECC------EEEEEEEEECCCchhhh----hhh---
Confidence 37999999999999999999987654434443332211 11122111 12357899999975431 111
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+..+|++++|+|+++..+++....+..++.... .+.|+++|+||+|+...
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEccccccc
Confidence 234578999999999988766666666666665532 36899999999998653
No 123
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.48 E-value=2.6e-13 Score=121.97 Aligned_cols=129 Identities=21% Similarity=0.222 Sum_probs=80.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
-.+|+++|.+|||||||+++|++..... + ..|...+...+... +..+.++|+||..+. ...+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~--~-~~t~g~~~~~i~~~--------~~~~~~~D~~G~~~~-------~~~~ 75 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH--I-TPTQGFNIKTVQSD--------GFKLNVWDIGGQRAI-------RPYW 75 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc--c-CCCCCcceEEEEEC--------CEEEEEEECCCCHHH-------HHHH
Confidence 3689999999999999999999865321 1 11111111123222 246899999996432 2334
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
...++.+|++++|+|+++..........+..+.... .....|+++|+||+|+....+..+..+.+++
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~ 142 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAPAEEIAEALNL 142 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCCHHHHHHHcCC
Confidence 556789999999999987544333332222222211 1246899999999999765544444444544
No 124
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.48 E-value=2.7e-13 Score=119.84 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=77.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++++.... ..++..++.+.....+..+ .....+.++||||..+.. .+. -.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~i~D~~g~~~~~----~~~---~~ 67 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLD------GEDVQLNILDTAGQEDYA----AIR---DN 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEEC------CEEEEEEEEECCChhhhh----HHH---HH
Confidence 799999999999999999997653 2344444432222222211 012468999999976531 122 23
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.++.+|.+++|+|++++.+......++..+..... ..+.|+++|+||+|+..
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 45778999999999876655555555554444321 24799999999999976
No 125
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.48 E-value=2.7e-13 Score=121.97 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=78.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|...+.. ..++.+ ........... ....++.+|||||..+. ...+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~-~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~-------~~~~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRV-LPEITIPADVT------PERVPTTIVDTSSRPQD-------RANLAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCc-ccceEeeeeec------CCeEEEEEEeCCCchhh-------hHHHhh
Confidence 7999999999999999999876532 223322 11111111111 01247899999997542 123345
Q ss_pred hcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+..+|++++|+|++++.+.++.. .|..+++.+. .+.|+++|+||+|+.+..+
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccc
Confidence 578899999999999877666543 3555565543 3689999999999976544
No 126
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.47 E-value=3.1e-13 Score=125.88 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=79.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeee--eccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
..+|+++|.+|||||||++++.+..... .+ .+|. +.....+.... ....+.+|||||.... ..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~------~~~~l~l~D~~G~~~~-------~~ 70 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SY-ITTIGVDFKIRTVEING------ERVKLQIWDTAGQERF-------RT 70 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-CccccceeEEEEEEECC------EEEEEEEEeCCCchhH-------HH
Confidence 4689999999999999999998765321 12 1222 11111221111 1236889999996432 22
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
....++..++++++|+|++++.+.+.+..+.+++.... ...|++||+||+|+....
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~ 126 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERK 126 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc
Confidence 23455778999999999998776666666666665543 358999999999997643
No 127
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.47 E-value=2.9e-13 Score=124.63 Aligned_cols=129 Identities=21% Similarity=0.257 Sum_probs=80.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||++++...+.. .+. +|.......+... ...+.++||||.... ...+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~-~T~~~~~~~~~~~--------~~~~~l~D~~G~~~~-------~~~~ 78 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV--TTI-PTIGFNVETVEYK--------NLKFTMWDVGGQDKL-------RPLW 78 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccC-CccccceEEEEEC--------CEEEEEEECCCCHhH-------HHHH
Confidence 368999999999999999999754321 121 2322222233322 247899999997432 2223
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
..+++.+|++|||+|+++.....+....+..+.. .......|++||+||+|+.+.....+....+++
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~ 145 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIGDAREELERMLS-EDELRDAVLLVFANKQDLPNAMSTTEVTEKLGL 145 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh-CHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCC
Confidence 4457899999999999876544444332222211 112346899999999999765433333344443
No 128
>PLN03118 Rab family protein; Provisional
Probab=99.47 E-value=4e-13 Score=126.15 Aligned_cols=121 Identities=19% Similarity=0.179 Sum_probs=78.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
..+|+|+|.+|||||||+++|+..... .+..|+ .+.....+..+. ....+.++||||..+.. .+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~~t~~~~~~~~~~~~~~------~~~~l~l~Dt~G~~~~~----~~--- 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE--DLAPTIGVDFKIKQLTVGG------KRLKLTIWDTAGQERFR----TL--- 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC--CcCCCceeEEEEEEEEECC------EEEEEEEEECCCchhhH----HH---
Confidence 368999999999999999999876542 221111 111111122111 12468999999975531 12
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+++.+|++|+|+|+++..+++.... +..++..+.. ....|+++|+||+|+....
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~ 136 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYST-NQDCVKMLVGNKVDRESER 136 (211)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccC
Confidence 2345678999999999998776666654 3344554432 2357899999999997543
No 129
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.47 E-value=2.3e-13 Score=125.87 Aligned_cols=123 Identities=25% Similarity=0.267 Sum_probs=78.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCC-------CCccCCCCeeeeccceeecCCCCCC------ccccccceEEecCCcccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK-------PDIADYPFTTLMPNLGRLDGDPTLG------AEKYSSEATLADLPGLIE 339 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~-------~~ia~~pfTTl~p~~g~v~~~~~~~------~~~~~~~i~iiDtPGlie 339 (421)
.+|+++|.+|+|||||+++|+... ......+.+|.+.....+....... .......+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 369999999999999999998731 1112344566665544333220000 001134799999999742
Q ss_pred cccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 340 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 340 ~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+...+...+..+|++++|+|++......+.+.+. .... ...|+++|+||+|+....
T Consensus 81 -------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~-----~~~~~iiv~NK~Dl~~~~ 136 (192)
T cd01889 81 -------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI-----LCKKLIVVLNKIDLIPEE 136 (192)
T ss_pred -------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCCEEEEEECcccCCHH
Confidence 3445556667899999999998754333333222 2222 257999999999997543
No 130
>PLN03110 Rab GTPase; Provisional
Probab=99.46 E-value=4.2e-13 Score=126.99 Aligned_cols=122 Identities=17% Similarity=0.097 Sum_probs=84.5
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++.+......+....+.....+..+. ....+.||||||.... ...+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~------~~~~l~l~Dt~G~~~~-------~~~~ 78 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG------KTVKAQIWDTAGQERY-------RAIT 78 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC------EEEEEEEEECCCcHHH-------HHHH
Confidence 46999999999999999999998764433233222222222332221 1247899999996542 2223
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+++.++++|+|+|+++..+++.+..|+..+..+.. .+.|+++|+||+|+....
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~ 133 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLR 133 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhccccc
Confidence 4557889999999999988777777777776665432 468999999999986543
No 131
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.46 E-value=4.5e-13 Score=121.36 Aligned_cols=128 Identities=15% Similarity=0.042 Sum_probs=79.8
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC----CccccccceEEecCCcccccccccCch
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----GAEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~----~~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
..+|+++|.+|||||||++++.+........+..+.+.....+...... ........+.+|||||..+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------- 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------- 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH-------
Confidence 3689999999999999999998765322111111111111112111000 00011246899999996543
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.......++.+|++++|+|++++.+..+...+..++..+.. ..+.|+++|+||+|+.+.
T Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~ 135 (180)
T cd04127 77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQ 135 (180)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhc
Confidence 11223456889999999999987766666666666655321 135789999999999754
No 132
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.46 E-value=5.1e-13 Score=125.76 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=82.7
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.|.++|..+||||||++++...... ..|+.|. .+-....+..+. ....+.+|||+|.... ...+-
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~------~~v~l~iwDtaGqe~~-------~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVELRG------KKIRLQIWDTAGQERF-------NSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEECC------EEEEEEEEeCCCchhh-------HHHHH
Confidence 5889999999999999999875532 2333221 222212222221 1247899999997543 11223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+++.||++++|+|++++.+++....|.+++..+.. .+.|+++|+||+|+....
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~~~~ 121 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDR 121 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccccc
Confidence 457899999999999998888888777777776532 468999999999997543
No 133
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.46 E-value=4.3e-13 Score=119.40 Aligned_cols=120 Identities=19% Similarity=0.178 Sum_probs=79.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++....... .+..|+.+.....+..+. ....+.+|||||..... .+ ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~---~~ 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIEVDS------SPSVLEILDTAGTEQFA----SM---RD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEEECC------EEEEEEEEECCCccccc----ch---HH
Confidence 479999999999999999998765322 222222111111222111 12357899999975432 12 22
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.+|++++|+|+++..+..+...+..++..... ..+.|+++|+||+|+...
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE 121 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc
Confidence 346789999999999987777777666666665431 246899999999998653
No 134
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.45 E-value=5.3e-13 Score=120.62 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=78.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||++++....... .+. .|.......+.... ......+.+|||||..+.. .+.. .
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~-~~~-~t~~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~~----~~~~---~ 68 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEK-KYV-ATLGVEVHPLDFHT----NRGKIRFNVWDTAGQEKFG----GLRD---G 68 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCC-CceeeEEEEEEEEE----CCEEEEEEEEECCCChhhc----cccH---H
Confidence 79999999999999999998654221 121 22211111111100 0112468999999975431 1222 3
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
++..+|++|+|+|+++..+.+.+..+..++..+.. +.|+++|+||+|+...
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~ 119 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR 119 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc
Confidence 45689999999999987777777777777766542 7999999999999743
No 135
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.45 E-value=5.1e-13 Score=121.41 Aligned_cols=120 Identities=19% Similarity=0.100 Sum_probs=78.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|++||.++||||||++++...... ..|.-|. .+.....+.... ....+.+|||||..+.. ...
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~-------~~~ 66 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILG------VPFSLQLWDTAGQERFK-------CIA 66 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECC------EEEEEEEEeCCChHHHH-------hhH
Confidence 37899999999999999999986532 2332222 122112222211 12468999999975431 122
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+++.+|++++|+|+++..+.+....|..++..... ....|+++|.||+|+.+.
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCcc
Confidence 3457899999999999876666666666665543221 124678999999999654
No 136
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.45 E-value=4.2e-13 Score=122.65 Aligned_cols=118 Identities=19% Similarity=0.147 Sum_probs=80.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|++||.++||||||++++..... ..+|..|+.+.....+... .....+.+|||+|..+.. .+. .
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~----~~~---~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIG------GEPYTLGLFDTAGQEDYD----RLR---P 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEEC------CEEEEEEEEECCCccchh----hhh---h
Confidence 4799999999999999999987553 2334333322221122211 112468899999985431 111 2
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++..+|++++|+|++++.+.+... .|..++.... .+.|+++|+||+|+...
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDD 120 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhC
Confidence 3567899999999999887777665 3666666543 36899999999998654
No 137
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.45 E-value=5.8e-13 Score=121.70 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=78.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|+|||||+++|.+.... ..+..|+.......+.... .....+.+|||||..+.. .....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~-----~~~~~l~i~Dt~G~~~~~-------~~~~~ 68 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPN-----GKIIELALWDTAGQEEYD-------RLRPL 68 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecC-----CcEEEEEEEECCCchhHH-------HHHHH
Confidence 7999999999999999999976532 2333333222222222210 012468999999965431 11123
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++.||++++|+|+++..++++... +..++..+. .+.|+++|+||+|+...
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKD 120 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhC
Confidence 4678999999999998776666543 444554433 36899999999999653
No 138
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.45 E-value=5.9e-13 Score=123.29 Aligned_cols=115 Identities=22% Similarity=0.292 Sum_probs=74.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc-cCC---------------CCeeeeccceeecCCCCCCccccccceEEecCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP 335 (421)
+.+|+++|.+|+|||||+++|+.....+ ..+ ..+|.......+... ...+.++|||
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~--------~~~~~l~Dtp 73 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK--------DTKINIVDTP 73 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC--------CEEEEEEECC
Confidence 4589999999999999999998632111 111 222333322223221 2478999999
Q ss_pred cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
|+.+. ......+++.+|++++|+|+++.. ......++.++.. .+.|+++|+||+|+...
T Consensus 74 G~~~~-------~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 74 GHADF-------GGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-----LGLKPIVVINKIDRPDA 132 (194)
T ss_pred CcHHH-------HHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 98653 223345678899999999998643 2233333333332 36899999999999753
No 139
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.44 E-value=4.1e-13 Score=121.79 Aligned_cols=120 Identities=14% Similarity=0.056 Sum_probs=79.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+|+|.||||||||+++++..... ..+..|+.......+.... ....+.++||||..+.. ....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~g~~~~~-------~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESYYPTIENTFSKIIRYKG------QDYHLEIVDTAGQDEYS-------ILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-cccCcchhhhEEEEEEECC------EEEEEEEEECCChHhhH-------HHHH
Confidence 47999999999999999999976532 2233333222222222211 12367899999975431 1122
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+..++++++|+|+++..+.+....++..+.... ...+.|+++|+||+|+...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhc
Confidence 44667999999999998766666666655554432 2246899999999998753
No 140
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.44 E-value=3.4e-13 Score=126.88 Aligned_cols=114 Identities=22% Similarity=0.214 Sum_probs=75.7
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCCCCc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLGA 322 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~~~ 322 (421)
+|+++|.+|+|||||+++|+...-.+. ....+|++.....+...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----- 75 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP----- 75 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-----
Confidence 589999999999999999976443321 01455666655554432
Q ss_pred cccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655 323 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (421)
Q Consensus 323 ~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~ 402 (421)
+.++.++||||+.+. .......+..+|++++|+|++.+....+ ..+...+..+. ..++|+|+||+
T Consensus 76 ---~~~~~liDTpG~~~~-------~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~----~~~iIvviNK~ 140 (208)
T cd04166 76 ---KRKFIIADTPGHEQY-------TRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG----IRHVVVAVNKM 140 (208)
T ss_pred ---CceEEEEECCcHHHH-------HHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC----CCcEEEEEEch
Confidence 347999999997542 2234456789999999999987543222 22333444321 24578899999
Q ss_pred CCCCC
Q 014655 403 DLPEM 407 (421)
Q Consensus 403 Dl~~~ 407 (421)
|+...
T Consensus 141 D~~~~ 145 (208)
T cd04166 141 DLVDY 145 (208)
T ss_pred hcccC
Confidence 99753
No 141
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.44 E-value=8.6e-13 Score=113.69 Aligned_cols=120 Identities=27% Similarity=0.214 Sum_probs=76.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
++|+++|.+|+|||||+++|.........++++|.+.....+.... ....+.++|+||..+.. .+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~G~~~~~----~~~~~-- 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDG------KTYKFNLLDTAGQEDYR----AIRRL-- 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECC------EEEEEEEEECCCcccch----HHHHH--
Confidence 5899999999999999999999884446667777766554443321 11468999999965432 12222
Q ss_pred HhcccCCEEEEEeeCCCC-CChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAE-NPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~-~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
....++.+++++|.... ....... .+...+..+.. .+.|+++|+||+|+...
T Consensus 70 -~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 70 -YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRDA 123 (161)
T ss_pred -HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCcc
Confidence 23455666777776543 2222221 23333333322 16899999999999764
No 142
>PTZ00369 Ras-like protein; Provisional
Probab=99.44 E-value=5.1e-13 Score=123.18 Aligned_cols=120 Identities=18% Similarity=0.126 Sum_probs=80.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++...... ..+..|+.......+..+. ....+.+|||||..+.. .+ ..
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~l---~~ 71 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQCVIDE------ETCLLDILDTAGQEEYS----AM---RD 71 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEEEECC------EEEEEEEEeCCCCccch----hh---HH
Confidence 58999999999999999999876532 2222222111111111111 12357899999976532 12 23
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++..+|++++|+|+++.++.+....+..++..+.. ..+.|+++|+||+|+...
T Consensus 72 ~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 72 QYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE 125 (189)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 456789999999999988777777777777765432 236899999999998654
No 143
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.44 E-value=1.1e-12 Score=117.78 Aligned_cols=118 Identities=19% Similarity=0.183 Sum_probs=80.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc--ceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN--LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~--~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
+|+++|.+++|||||++++...+..... ..|.... ...+.... ....+.+|||||..... ...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~~-------~~~ 66 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH--ISTIGVDFKMKTIEVDG------IKVRIQIWDTAGQERYQ-------TIT 66 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECC------EEEEEEEEeCCCcHhHH-------hhH
Confidence 6899999999999999999876543221 2232221 11222211 12468899999964431 112
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++..+|++++|+|++++.+.+....+.+++..+.. .+.|+++|.||+|+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 67 KQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP--EGVQKILIGNKADEEQKR 121 (161)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccc
Confidence 3456789999999999988777777777776665432 368999999999997544
No 144
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.43 E-value=5.9e-13 Score=119.77 Aligned_cols=116 Identities=22% Similarity=0.218 Sum_probs=76.3
Q ss_pred ecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHh
Q 014655 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 354 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~ 354 (421)
|+++|.+|+|||||++++...... ..+..|........+..+ .....+.+|||||..+... +. ...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~~~----~~---~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-EDYVPTVFENYSADVEVD------GKPVELGLWDTAGQEDYDR----LR---PLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-CCCCCcEEeeeeEEEEEC------CEEEEEEEEECCCCcccch----hc---hhh
Confidence 578999999999999999886532 222222222211122211 1123689999999765321 11 124
Q ss_pred cccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 355 LRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 355 i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
++.+|++|+|+|+++..+.+... .|...+..+. .+.|+++|+||+|+...
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRED 117 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhC
Confidence 67899999999999876666553 3555565543 46899999999999763
No 145
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.43 E-value=5.5e-13 Score=120.94 Aligned_cols=121 Identities=21% Similarity=0.111 Sum_probs=77.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc-ceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
|...+|+++|.+|||||||++++.+....+..|..|+.... ...+..+. ....+.++|++|..+.. .+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~------~~~~l~~~d~~g~~~~~----~~- 70 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYG------QEKYLILREVGEDEVAI----LL- 70 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECC------eEEEEEEEecCCccccc----cc-
Confidence 34578999999999999999999987644244544442211 11222211 12367899999975431 11
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+++.||++++|+|++++.+.+.. .+++..+.. ..+.|+++|+||+|+.+.
T Consensus 71 --~~~~~~~~d~~llv~d~~~~~s~~~~---~~~~~~~~~-~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 71 --NDAELAACDVACLVYDSSDPKSFSYC---AEVYKKYFM-LGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred --chhhhhcCCEEEEEEeCCCHHHHHHH---HHHHHHhcc-CCCCeEEEEEEccccccc
Confidence 22346899999999999876444433 333333221 136899999999999654
No 146
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.43 E-value=5.7e-13 Score=123.87 Aligned_cols=119 Identities=16% Similarity=0.134 Sum_probs=80.4
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||++++...+.. ..+..|+.......+.... ....+.++||||..+.. .+ ...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~D~~G~~~~~----~~---~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGG------VSLTLDILDTSGSYSFP----AM---RKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECC------EEEEEEEEECCCchhhh----HH---HHH
Confidence 5899999999999999999886532 2333333222222222211 12368899999976531 11 123
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+..||++++|+|++++.+.+....+...+..+.. ..+.|+++|+||+|+...
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEE 119 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEccccccc
Confidence 46789999999999987777777666666655432 146899999999999753
No 147
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.43 E-value=1.4e-13 Score=116.67 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=74.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCC---c-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPD---I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~---i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+|.++|.++||||||+++|.+.... . .+....+.......+... ...+.++|++|..+.... .
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~d~~g~~~~~~~----~- 67 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGD--------RQSLQFWDFGGQEEFYSQ----H- 67 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTE--------EEEEEEEEESSSHCHHCT----S-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCC--------ceEEEEEecCccceeccc----c-
Confidence 6899999999999999999987654 1 222222322222233222 124889999998654221 1
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
. ..+..+|++++|+|++++.+.+.+..+..+|..+.....+.|+++|+||.|
T Consensus 68 ~--~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 68 Q--FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp H--HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred c--chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 1 127889999999999987766666556556655432224599999999998
No 148
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.42 E-value=5.2e-13 Score=119.22 Aligned_cols=120 Identities=23% Similarity=0.202 Sum_probs=75.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.+.... +..|..+.....+... .....+.++||||+.+... +. .
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~l~~~D~~g~~~~~~----~~---~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTE-YVPTVFDNYSATVTVD------GKQVNLGLWDTAGQEEYDR----LR---P 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCCceeeeeEEEEEEC------CEEEEEEEEeCCCcccccc----cc---h
Confidence 3789999999999999999998764221 1111111111111111 0123689999999876421 11 1
Q ss_pred HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..++.+|++++|+|++++.+.... ..+...+..+. .+.|+++|+||+|+.....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~ 121 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDEN 121 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchh
Confidence 234789999999999875544433 22444444433 3799999999999976653
No 149
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.42 E-value=1.1e-12 Score=123.68 Aligned_cols=122 Identities=20% Similarity=0.107 Sum_probs=79.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.+......+..+.+.....+...+ .....+.++||||.... .....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~-----~~~~~l~i~Dt~G~~~~-------~~~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEP-----GVRIKLQLWDTAGQERF-------RSITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECC-----CCEEEEEEEeCCcchhH-------HHHHH
Confidence 5899999999999999999998664332222221222111222111 11246899999997543 11223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++..+|++|+|+|++++.+.+.+..+..++..+.. ....|+++|.||+|+...
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQ 124 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccc
Confidence 456889999999999987777776666666554321 134678999999999764
No 150
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.42 E-value=8.9e-13 Score=118.59 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=77.5
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|+|||||++++...+.. ..+..|+.+.....+..+. ....+.+|||||..+... +.. .
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~~~---~ 67 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGG------KQYLLGLYDTAGQEDYDR----LRP---L 67 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECC------EEEEEEEEeCCCcccccc----ccc---c
Confidence 7899999999999999999876532 2333333222111222211 123578999999755321 111 2
Q ss_pred hcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+..+|++++|+|++++.++++.. .+..++... ..+.|+++|+||+|+.+.
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcC
Confidence 357899999999999877666653 455566554 257899999999998654
No 151
>PLN03108 Rab family protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=123.42 Aligned_cols=121 Identities=17% Similarity=0.063 Sum_probs=80.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|+|.+|||||||+++|+..+......+....+.....+.... ....+.+|||||.... ....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~------~~i~l~l~Dt~G~~~~-------~~~~ 72 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN------KPIKLQIWDTAGQESF-------RSIT 72 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECC------EEEEEEEEeCCCcHHH-------HHHH
Confidence 36899999999999999999997654332222111111122222211 1236889999997543 1123
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++..+|++|+|+|+++..+.+....+..++..+.. ...|+++|+||+|+...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAHR 126 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccc
Confidence 3556789999999999987766666556655554332 36899999999999754
No 152
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.41 E-value=1.2e-12 Score=117.85 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=79.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.||||||||++++.+... ...+..|+.......+... .....+.+|||||..+.. .+.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~~----~~~~--- 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEID------GRQCDLEILDTAGTEQFT----AMRE--- 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEEC------CEEEEEEEEeCCCcccch----hhhH---
Confidence 3799999999999999999986652 2233333322111112111 112468899999976542 2222
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.++.+++|+|++++.+.+....+..++.... ...+.|+++|+||+|+....
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~ 122 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDR 122 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccC
Confidence 23567899999999998777766666666665432 22468999999999997544
No 153
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.41 E-value=1e-12 Score=127.38 Aligned_cols=119 Identities=11% Similarity=0.107 Sum_probs=80.5
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||++++...+.. ..|..|+.+.....+.... ....+.||||+|..+.. .+ ...
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i~~------~~~~l~I~Dt~G~~~~~----~~---~~~ 67 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSIRG------EVYQLDILDTSGNHPFP----AM---RRL 67 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEECC------EEEEEEEEECCCChhhh----HH---HHH
Confidence 6899999999999999999875532 2343343222222222211 12468899999975431 11 112
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC-------CCCCCCCEEEEEeCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN-------PDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~-------~~l~~kP~IIVlNK~Dl~~ 406 (421)
++..+|++|+|+|+++.++++.+..+.+++..+. ....+.|+|+|+||+|+..
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 3568999999999998877777777777775532 1224689999999999975
No 154
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.41 E-value=1.1e-12 Score=115.30 Aligned_cols=118 Identities=26% Similarity=0.300 Sum_probs=78.1
Q ss_pred eecccCCCCCChhHHHHHHhc--CCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc------ccC
Q 014655 274 DVGLVGLPNAGKSTLLAAITH--AKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH------LGK 345 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~--~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~------~~~ 345 (421)
+|+++|.+|||||||+|+|++ ..+..++.+++|.......+ ...++++||||+..... .-.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~~~D~~g~~~~~~~~~~~~~~~ 69 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV-----------NDKFRLVDLPGYGYAKVSKEVKEKWG 69 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc-----------cCeEEEecCCCccccccCHHHHHHHH
Confidence 589999999999999999994 33445666666655433222 12689999999765311 011
Q ss_pred chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+...|+...+.++++++|+|......... ..+.+++.. ...|+++|+||+|+....
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~l~~-----~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 70 KLIEEYLENRENLKGVVLLIDSRHGPTEID-LEMLDWLEE-----LGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHhChhhhEEEEEEEcCcCCCHhH-HHHHHHHHH-----cCCCEEEEEEchhcCChH
Confidence 122334444456789999999876543333 334556655 347999999999996544
No 155
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.41 E-value=8e-13 Score=115.35 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=66.5
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+|+|++.... +.. |. .+.. ...++||||.... ..........
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~-----~~~~-----------~~~~iDt~G~~~~---~~~~~~~~~~ 58 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQ-----AVEY-----------NDGAIDTPGEYVE---NRRLYSALIV 58 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-ce-----eEEE-----------cCeeecCchhhhh---hHHHHHHHHH
Confidence 6899999999999999999876531 111 11 1111 1268999997321 0111222234
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++.||++++|+|++++.+.... .+. +. ..+|+++|+||+|+.+.
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~-~~~---~~-----~~~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPP-GFA---SI-----FVKPVIGLVTKIDLAEA 103 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCCh-hHH---Hh-----ccCCeEEEEEeeccCCc
Confidence 57899999999999887665432 222 21 13599999999999754
No 156
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.40 E-value=1.2e-12 Score=124.56 Aligned_cols=119 Identities=21% Similarity=0.180 Sum_probs=77.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeee-eccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl-~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
+|+++|.+|+|||||+++++........++.+.- +.....+..+. ....+.+|||||... .+...+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~------~~~~l~i~Dt~G~~~------~~~~~~- 68 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG------EESTLVVIDHWEQEM------WTEDSC- 68 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC------EEEEEEEEeCCCcch------HHHhHH-
Confidence 7999999999999999999765433222222110 11111121110 124689999999751 111222
Q ss_pred Hhcc-cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~-radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+. .+|++++|+|++++.+++....+..++..+.. ..+.|+|+|+||+|+....
T Consensus 69 --~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~ 122 (221)
T cd04148 69 --MQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSR 122 (221)
T ss_pred --hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccc
Confidence 33 89999999999987777766667776665432 2468999999999997643
No 157
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.40 E-value=4.9e-13 Score=122.53 Aligned_cols=127 Identities=20% Similarity=0.348 Sum_probs=81.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
-.+|.++|+.|||||||++.|...+.. . ...|...+...+... +..+.++|++|.... ...+
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~--~-~~pT~g~~~~~i~~~--------~~~~~~~d~gG~~~~-------~~~w 75 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEIS--E-TIPTIGFNIEEIKYK--------GYSLTIWDLGGQESF-------RPLW 75 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEE--E-EEEESSEEEEEEEET--------TEEEEEEEESSSGGG-------GGGG
T ss_pred EEEEEEECCCccchHHHHHHhhhcccc--c-cCcccccccceeeeC--------cEEEEEEeccccccc-------cccc
Confidence 358999999999999999999865321 1 122333333333332 347999999996432 2234
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIG 418 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG 418 (421)
..+++.+|++|||||+++.+...+.. .+.+.+.. +.....|++|++||+|+.++....+....++
T Consensus 76 ~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~--~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~ 141 (175)
T PF00025_consen 76 KSYFQNADGIIFVVDSSDPERLQEAKEELKELLND--PELKDIPILILANKQDLPDAMSEEEIKEYLG 141 (175)
T ss_dssp GGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTS--GGGTTSEEEEEEESTTSTTSSTHHHHHHHTT
T ss_pred eeeccccceeEEEEecccceeecccccchhhhcch--hhcccceEEEEeccccccCcchhhHHHhhhh
Confidence 45568899999999999755433332 22222221 2345799999999999987655444333444
No 158
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.40 E-value=1.7e-12 Score=120.84 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=82.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCe-eeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT-TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfT-Tl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
..+|+++|..+||||||+.++...... .+++.| +.+-..-.+..+ .....+.+|||||.... ...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~------~~~~~l~iwDt~G~~~~-------~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLD------GRRVKLQLWDTSGQGRF-------CTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEEC------CEEEEEEEEeCCCcHHH-------HHH
Confidence 468999999999999999999875422 222211 111111112211 11246899999997543 122
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+..+++.+|++|+|+|++++.+++....|.+++..+. .+.|+|+|.||+|+...
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~ 125 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFK 125 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhc
Confidence 3345689999999999999888888888888887654 36899999999999653
No 159
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.40 E-value=1.3e-12 Score=117.70 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=77.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.++||||||++++.+.... ..+..|..+.....+..+. ....+.++||||..+... +. .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~~----~~---~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVDG------KQVELALWDTAGQEDYDR----LR---P 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEECC------EEEEEEEEeCCCchhhhh----cc---c
Confidence 47999999999999999999976532 2233333222222332221 123689999999754311 11 1
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+..+|++++|+|+++.++.+++. .+..++..+. .+.|+++|+||+|+...
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRND 120 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccC
Confidence 2457899999999999876655553 3445555432 46899999999998754
No 160
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.40 E-value=1.9e-12 Score=121.27 Aligned_cols=115 Identities=23% Similarity=0.227 Sum_probs=76.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc----------------cCCCCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG 336 (421)
..|+++|.+++|||||+++|+...... ....++|.+.....+... ..++.++||||
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iDtPG 74 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--------NRHYAHVDCPG 74 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--------CeEEEEEECcC
Confidence 479999999999999999997531000 013445555443333321 34789999999
Q ss_pred ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCC
Q 014655 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMY 408 (421)
Q Consensus 337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~ 408 (421)
+.+ +.......+..+|++++|+|+......++ +.++..+.. .++| +|+|+||+|+....
T Consensus 75 ~~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~-----~~~~~iIvviNK~D~~~~~ 134 (195)
T cd01884 75 HAD-------YIKNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ-----VGVPYIVVFLNKADMVDDE 134 (195)
T ss_pred HHH-------HHHHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCcEEEEEeCCCCCCcH
Confidence 854 23344566788999999999987543333 344555555 3466 77899999997543
No 161
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.39 E-value=8.8e-13 Score=142.50 Aligned_cols=113 Identities=30% Similarity=0.466 Sum_probs=82.0
Q ss_pred CCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHHHHHhcc
Q 014655 279 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRNFLRHLR 356 (421)
Q Consensus 279 G~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~fL~~i~ 356 (421)
|.||+|||||+|+|++.+..++++|++|.+...+.+... +.++.++||||+.+.... .+.+.+.++. .+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~--------~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~ 71 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ--------GEDIEIVDLPGIYSLTTFSLEEEVARDYLL-NE 71 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC--------CeEEEEEECCCccccCccchHHHHHHHHHh-hc
Confidence 889999999999999998888999999999888877654 246899999998764321 1223333322 25
Q ss_pred cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 357 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 357 radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+|++++|+|+++.+ .....+ .++.. .++|+++|+||+|+.+..
T Consensus 72 ~aDvvI~VvDat~le--r~l~l~-~ql~~-----~~~PiIIVlNK~Dl~~~~ 115 (591)
T TIGR00437 72 KPDLVVNVVDASNLE--RNLYLT-LQLLE-----LGIPMILALNLVDEAEKK 115 (591)
T ss_pred CCCEEEEEecCCcch--hhHHHH-HHHHh-----cCCCEEEEEehhHHHHhC
Confidence 789999999998632 222222 23332 368999999999986543
No 162
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.39 E-value=2.1e-12 Score=117.56 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=79.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++...+.. ..+..|+-......+..+. ....+.++||||..+.. .+ ..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~l---~~ 68 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQARIDN------EPALLDILDTAGQAEFT----AM---RD 68 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEEECC------EEEEEEEEeCCCchhhH----HH---hH
Confidence 47999999999999999999875532 1222222111111111111 12368999999976531 12 23
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++..+|++++|+|++++.+++....+...+..... ..+.|+++|+||+|+...
T Consensus 69 ~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc
Confidence 446789999999999998888877766666665421 246899999999998654
No 163
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.39 E-value=2.6e-12 Score=117.28 Aligned_cols=118 Identities=20% Similarity=0.158 Sum_probs=77.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+.++..... +..|..|..+...-.+..+ .....+.+|||||..+.. .+. .
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~----~~~---~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVD------GKPVNLGLWDTAGQEDYD----RLR---P 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCCcceeeeEEEEEEC------CEEEEEEEEECCCchhhh----hhh---h
Confidence 3789999999999999999986542 2233222221111111111 112468999999975431 112 2
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++..+|++|+|+|++++++++... .|..++.... .+.|+++|.||+|+.+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~ 120 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD 120 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccC
Confidence 3467899999999999877766664 3555555433 36899999999999654
No 164
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.38 E-value=1.7e-12 Score=119.88 Aligned_cols=118 Identities=20% Similarity=0.151 Sum_probs=77.4
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||++++....... .+..|........+..+ .....+.+|||||..+.. .+.. .
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~i~~~------~~~~~l~i~Dt~G~~~~~----~l~~---~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFENYVHDIFVD------GLHIELSLWDTAGQEEFD----RLRS---L 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceeeeEEEEEEC------CEEEEEEEEECCCChhcc----cccc---c
Confidence 78999999999999999998765321 22222211111111111 112468999999975431 1211 2
Q ss_pred hcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
++..+|++++|+|++++.+++... .+..++..+. .+.|+++|+||+|+....
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREAR 120 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCh
Confidence 357899999999999887776654 3555555433 368999999999997654
No 165
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.38 E-value=2.3e-12 Score=109.20 Aligned_cols=120 Identities=21% Similarity=0.153 Sum_probs=75.7
Q ss_pred ccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcc
Q 014655 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 356 (421)
Q Consensus 277 LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~ 356 (421)
++|.+|+|||||+++|.+.......+..|..+.....+... .....+.++|+||+.+... .....+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~~l~D~~g~~~~~~-------~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVD------GKKVKLQIWDTAGQERFRS-------LRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEEC------CEEEEEEEEecCChHHHHh-------HHHHHhc
Confidence 58999999999999999876532222222222222222111 0134799999999876421 1234568
Q ss_pred cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655 357 RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 357 radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
.+|++++|+|++.+........++..... .......|+++|+||+|+....+.
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEERVV 120 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHH-hhccCCCcEEEEEeccccccccch
Confidence 89999999999986555544433111111 122357999999999999866543
No 166
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.38 E-value=2.9e-12 Score=118.69 Aligned_cols=119 Identities=20% Similarity=0.128 Sum_probs=78.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|..+||||||+.++..... ...|..|.-+.....+..+ .....+.+|||+|..+.. .+ .-
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~------~~~~~l~i~Dt~G~e~~~----~l---~~ 69 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEYIPTVFDNYSAQTAVD------GRTVSLNLWDTAGQEEYD----RL---RT 69 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCCCCceEeeeEEEEEEC------CEEEEEEEEECCCchhhh----hh---hh
Confidence 4899999999999999999987542 1222222211111111111 112468999999975531 12 22
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+++.||++|+|+|++++.+++... .|..++..+. .+.|+++|+||+||.+..
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~ 123 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDA 123 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcCh
Confidence 3467899999999999888777765 3555565443 468999999999997543
No 167
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.38 E-value=2.5e-12 Score=120.82 Aligned_cols=123 Identities=23% Similarity=0.289 Sum_probs=77.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
++|+|+|+++||||||+++|...+... . .++..++...+..... .....+.++||||+.+. ...+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t--~~s~~~~~~~~~~~~~----~~~~~~~l~D~pG~~~~-------~~~~~ 66 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-T--VTSIEPNVATFILNSE----GKGKKFRLVDVPGHPKL-------RDKLL 66 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-c--cCcEeecceEEEeecC----CCCceEEEEECCCCHHH-------HHHHH
Confidence 368999999999999999998865321 1 2223444444332110 11246899999997643 34456
Q ss_pred HhcccC-CEEEEEeeCCCC-CChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 353 RHLRRT-RLLVHVIDAAAE-NPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 353 ~~i~ra-dvIl~VvD~s~~-~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.++..+ +++|||+|+++. ....+.. .+...+..........|++||+||+|+..+..
T Consensus 67 ~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 67 ETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred HHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 667777 999999999875 2222222 22222222111114689999999999976543
No 168
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.37 E-value=3.1e-12 Score=121.47 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=78.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce--eecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g--~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.+|++||.+|||||||++++...+... .+. +|...... .+... .....+.+|||||..... .+.
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~-~~~-~tig~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~----~~~-- 79 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYE-PTIGVEVHPLDFFTN------CGKIRFYCWDTAGQEKFG----GLR-- 79 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCC-ccC-CccceeEEEEEEEEC------CeEEEEEEEECCCchhhh----hhh--
Confidence 589999999999999999987654321 111 12111111 11111 012478999999975431 122
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++..+|++|+|+|+++..+.+....|..++..+. .+.|+++|+||+|+...
T Consensus 80 -~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~ 132 (219)
T PLN03071 80 -DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR 132 (219)
T ss_pred -HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhc
Confidence 234678999999999998877777777777776553 46899999999998643
No 169
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.37 E-value=3.9e-12 Score=121.65 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=77.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|++||.++||||||+++++.... ...|..|........+..+. ....+.||||+|..+.. .+. -
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~pTi~~~~~~~~~~~~------~~v~L~iwDt~G~e~~~----~l~---~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-PGSYVPTVFENYTASFEIDK------RRIELNMWDTSGSSYYD----NVR---P 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccceEEEEEECC------EEEEEEEEeCCCcHHHH----HHh---H
Confidence 4799999999999999999987542 22333332221111122111 12468999999975431 111 1
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+..+|++|+|+|++++++++... .|..++..+. .+.|+|+|.||+|+...
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccc
Confidence 2367899999999999887776663 3444555443 46899999999999653
No 170
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.37 E-value=3e-12 Score=124.48 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=84.3
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc---
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--- 343 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--- 343 (421)
++....+|+|+|.+|||||||+|+|.+.... +..+..+|........... +..+.++||||+.+....
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~--------g~~i~vIDTPGl~~~~~~~~~ 98 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD--------GFKLNIIDTPGLLESVMDQRV 98 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--------CeEEEEEECCCcCcchhhHHH
Confidence 4556679999999999999999999998753 4666667766554433221 247999999999876321
Q ss_pred cCchhHHHHHhcc--cCCEEEEEeeCCCCC-ChhhHHHHHHHHHh-cCCCCCCCCEEEEEeCCCCCCCC
Q 014655 344 GKGLGRNFLRHLR--RTRLLVHVIDAAAEN-PVNDYRTVKEELRM-YNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 344 ~~gl~~~fL~~i~--radvIl~VvD~s~~~-~~~~~~~l~~eL~~-~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+........++++ ..|+++||..+.... ...+. .+.+.+.. +... .-.++++|+||+|...++
T Consensus 99 ~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~-~llk~I~e~fG~~-i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 99 NRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDL-PLLRAITDSFGPS-IWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHH-HHHHHHHHHhChh-hHhCEEEEEeCCccCCCC
Confidence 1111122223332 578999997665432 23333 34444443 4322 236799999999987554
No 171
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.37 E-value=6.6e-12 Score=118.36 Aligned_cols=124 Identities=16% Similarity=0.049 Sum_probs=81.2
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeee--ccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM--PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~--p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
+|+++|.+++|||||++++.+..... .+. .|.. .....+.+...... .....+.+|||+|..+. ..+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~-~~~-~Tig~~~~~k~~~~~~~~~~-~~~~~l~IwDtaG~e~~----~~l~--- 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG-RPS-WTVGCSVDVKHHTYKEGTPE-EKTFFVELWDVGGSESV----KSTR--- 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCC-cceeeeEEEEEEEEcCCCCC-CcEEEEEEEecCCchhH----HHHH---
Confidence 78999999999999999999765322 222 2221 11112222110000 11246899999997543 1122
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-----------------CCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-----------------DYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-----------------~l~~kP~IIVlNK~Dl~~~ 407 (421)
-.++..+|++|+|+|+++..+.+.+..|.+++..... .....|+++|.||+|+.+.
T Consensus 72 ~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 2346789999999999998888888878777765321 1135899999999999764
No 172
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.36 E-value=3.9e-12 Score=125.05 Aligned_cols=113 Identities=22% Similarity=0.188 Sum_probs=76.1
Q ss_pred eecccCCCCCChhHHHHHHhcCC---CC---ccC------------CCCeeeeccceeecCCCCCCccccccceEEecCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK---PD---IAD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~---~~---ia~------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP 335 (421)
+|+++|.+|+|||||+++|.... .+ +.+ ...+|++.....+... +.++.++|||
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--------~~~i~liDTP 72 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--------DHRINIIDTP 72 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--------CEEEEEEECC
Confidence 48999999999999999996321 11 111 1233333333333222 3579999999
Q ss_pred cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
|+.+. .....+.++.+|++++|+|+.......+ +.++..+.. .++|+++|+||+|+...
T Consensus 73 G~~df-------~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~-----~~~p~ivviNK~D~~~a 131 (270)
T cd01886 73 GHVDF-------TIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR-----YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred CcHHH-------HHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECCCCCCC
Confidence 98653 2345677888999999999987654333 345555554 45899999999999754
No 173
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.36 E-value=3.6e-12 Score=121.71 Aligned_cols=113 Identities=23% Similarity=0.188 Sum_probs=77.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||++++...+.. .+ .+|........... ...+.||||||.... ..+. ..
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~--~~-~~Tig~~~~~~~~~--------~~~l~iwDt~G~e~~----~~l~---~~ 63 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK--DT-VSTVGGAFYLKQWG--------PYNISIWDTAGREQF----HGLG---SM 63 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC--CC-CCccceEEEEEEee--------EEEEEEEeCCCcccc----hhhH---HH
Confidence 7899999999999999999876632 11 12322221111111 236899999997543 1122 23
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
+++.+|++|+|+|+++..+++.+..++..+.... ..+.|+|+|.||+|+..
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~--~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA--NEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence 4678999999999998887777766655555432 24589999999999975
No 174
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.36 E-value=3.3e-12 Score=115.58 Aligned_cols=117 Identities=21% Similarity=0.143 Sum_probs=77.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|+|||||++++.... ....++.|+.+.....+.... ....+.+|||||..+.... . -.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~----~---~~ 67 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YPTEYVPTAFDNFSVVVLVDG------KPVRLQLCDTAGQDEFDKL----R---PL 67 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeeeEEEEECC------EEEEEEEEECCCChhhccc----c---cc
Confidence 68999999999999999997654 234455454332222222211 1246889999998553211 1 12
Q ss_pred hcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++.+|++++|+|++++.+.+... .+...+.... .+.|+++|+||+|+...
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTD 119 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccC
Confidence 457899999999999877666543 3555555432 35899999999999653
No 175
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.35 E-value=1.7e-12 Score=119.94 Aligned_cols=116 Identities=28% Similarity=0.359 Sum_probs=76.7
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccC------------------CCCeeeeccceeecCCCCCCccccccceEEe
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD------------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 332 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~------------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~ii 332 (421)
.+..|+++|..++|||||+.+|+.....+.. ....|.......+.. ..-...++++
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~------~~~~~~i~~i 75 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK------NENNRKITLI 75 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB------TESSEEEEEE
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc------cccccceeec
Confidence 4568999999999999999999864422211 011122222222210 0113579999
Q ss_pred cCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 333 DtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
||||+.+. .....+.+..+|++|+|||+........ ..++..+.. .+.|+++|+||+|+.
T Consensus 76 DtPG~~~f-------~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~-----~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 76 DTPGHEDF-------IKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE-----LGIPIIVVLNKMDLI 135 (188)
T ss_dssp EESSSHHH-------HHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH-----TT-SEEEEEETCTSS
T ss_pred ccccccce-------eecccceecccccceeeeeccccccccc-ccccccccc-----cccceEEeeeeccch
Confidence 99997653 3345566889999999999987654433 445555665 468899999999998
No 176
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.35 E-value=4e-12 Score=116.91 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=80.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.++||||||++++..... ...|..|........+..+. ....+.+|||+|...... +. .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~------~~~~l~iwDt~G~~~~~~----~~---~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY-PETYVPTVFENYTASFEIDE------QRIELSLWDTSGSPYYDN----VR---P 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CCCcCCceEEEEEEEEEECC------EEEEEEEEECCCchhhhh----cc---h
Confidence 3799999999999999999987642 22333332211111121111 124689999999754311 11 1
Q ss_pred HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.+++.||++|+|+|++++.+++.. ..|..++..+. .+.|+++|.||+||.+
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~~ 119 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC---PNTKVLLVGCKTDLRT 119 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC---CCCCEEEEEEChhhhc
Confidence 346789999999999998888874 67777777765 3689999999999864
No 177
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.33 E-value=7.6e-12 Score=115.71 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=80.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+++|||||++++..... ...|..|......-.+..+. ....+.+|||+|..+.. .+ ..
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~pT~~~~~~~~~~~~~------~~~~l~iwDtaG~e~~~----~~---~~ 71 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDT------QRIELSLWDTSGSPYYD----NV---RP 71 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeeeeEEEEEECC------EEEEEEEEECCCchhhH----hh---hh
Confidence 5899999999999999999987542 22333232211111122111 12468999999975431 11 12
Q ss_pred HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.+++.||++++|+|++++.+++.+ ..|..++..+. .+.|+++|.||+||.+
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~ 123 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRT 123 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEeEChhhhc
Confidence 346889999999999998887775 66777777764 3589999999999864
No 178
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.33 E-value=5.5e-12 Score=116.10 Aligned_cols=118 Identities=22% Similarity=0.207 Sum_probs=81.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+++|||||+.++...+. ...|..|..+...-.+..+ .....+.+|||+|..+... +. .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~~~~~~~------~~~v~l~i~Dt~G~~~~~~----~~---~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVSVD------GNTVNLGLWDTAGQEDYNR----LR---P 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcceeeeEEEEEEC------CEEEEEEEEECCCCccccc----cc---h
Confidence 5799999999999999999997653 2233323222111112111 1124789999999765421 22 2
Q ss_pred HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.||++|+|+|++++.+++.. +.|..++..+. .+.|+++|.||+|+.+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~ 120 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDD 120 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccC
Confidence 356889999999999998888776 56777776654 36899999999999653
No 179
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.33 E-value=5e-12 Score=114.07 Aligned_cols=104 Identities=21% Similarity=0.233 Sum_probs=67.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+|+|.+..... .+| +.+.+.. . .+|||||+... .....+....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~-----~~v~~~~--------~--~~iDtpG~~~~---~~~~~~~~~~ 60 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKT-----QAVEFND--------K--GDIDTPGEYFS---HPRWYHALIT 60 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccc-----eEEEECC--------C--CcccCCccccC---CHHHHHHHHH
Confidence 69999999999999999998764211 111 1122110 1 36999997432 1122333445
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++.||++++|+|++....... .++..+. ..+|+++|+||+|+...
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~-----~~~~~~~---~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLP-----AGLLDIG---VSKRQIAVISKTDMPDA 106 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccC-----HHHHhcc---CCCCeEEEEEccccCcc
Confidence 5789999999999987654322 1222221 35799999999998653
No 180
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.32 E-value=8.4e-12 Score=112.63 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=85.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
-.+|.++|+.||||||++++|.+..+. +.+ |+--++-.+.+. ..++.++|+-|.. .+...
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~--------~~~L~iwDvGGq~-------~lr~~ 76 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYK--------GYTLNIWDVGGQK-------TLRSY 76 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEec--------ceEEEEEEcCCcc-------hhHHH
Confidence 358999999999999999999987632 122 221222223322 3479999999954 45666
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIG 418 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG 418 (421)
|..+.+.+|++|||||.+++-..++.. .|.+.|. ...+...|++|++||.|+..+-...+....++
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~--eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~ 143 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQECKQELTELLV--EERLAGAPLLVLANKQDLPGALSLEEISKALD 143 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHh--hhhhcCCceEEEEecCcCccccCHHHHHHhhC
Confidence 777889999999999998754443333 3333333 45567799999999999996654444333333
No 181
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=4.2e-12 Score=123.45 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=95.0
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
...+|.|+|.++||||||||+|...+... +..+.+|..+..-...++ ...+++|||||+-++-..+.....
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~--------~~~l~lwDtPG~gdg~~~D~~~r~ 109 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD--------GENLVLWDTPGLGDGKDKDAEHRQ 109 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc--------ccceEEecCCCcccchhhhHHHHH
Confidence 44578899999999999999999655443 444444444333333332 246899999999887655666778
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.+.+.|++++++|+.+++...+++.+.+.+..- .++++++|+|.+|....
T Consensus 110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG----LDKRVLFVVTQADRAEP 163 (296)
T ss_pred HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc----cCceeEEEEehhhhhcc
Confidence 8899999999999999999988777777777766542 34899999999998765
No 182
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.32 E-value=1.6e-11 Score=120.47 Aligned_cols=115 Identities=24% Similarity=0.258 Sum_probs=74.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccC---------CCCeeee-------------ccceeecCCCCCCccccccceE
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---------YPFTTLM-------------PNLGRLDGDPTLGAEKYSSEAT 330 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------~pfTTl~-------------p~~g~v~~~~~~~~~~~~~~i~ 330 (421)
..|+|+|++|+|||||+++|+...-.+.. ...|+.+ .....+. +.+.++.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~--------~~~~~i~ 74 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE--------YRDCVIN 74 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe--------eCCEEEE
Confidence 57999999999999999999754322211 0111111 1111111 1235799
Q ss_pred EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
++||||+.+.. ......++.+|++++|+|++.... ...+.+++.+.. .++|+++++||+|+..+.
T Consensus 75 liDTPG~~df~-------~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~-----~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 75 LLDTPGHEDFS-------EDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL-----RGIPIITFINKLDREGRD 139 (267)
T ss_pred EEECCCchHHH-------HHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh-----cCCCEEEEEECCccCCCC
Confidence 99999976531 223456788999999999987543 223344555443 368999999999987654
No 183
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=1.4e-12 Score=125.49 Aligned_cols=122 Identities=34% Similarity=0.529 Sum_probs=104.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
++|+|||+|++|||||+..|++....++.|.|||+....|++.+. ..++.+.|.||+||+|..++|.+++.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~--------gaKiqlldlpgiiegakdgkgrg~qvi 131 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYK--------GAKIQLLDLPGIIEGAKDGKGRGKQVI 131 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecc--------ccceeeecCcchhcccccCCCCccEEE
Confidence 589999999999999999999998889999999999998988765 358999999999999999999999888
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
...+.|.+|++|+|+..+ ...-+.+..||+-+...+.+.|--+...|-|.
T Consensus 132 avartcnli~~vld~~kp--~~hk~~ie~eleg~girlnk~pp~i~~kkKdk 181 (358)
T KOG1487|consen 132 AVARTCNLIFIVLDVLKP--LSHKKIIEKELEGFGIRLNKQPPNIGTKKKDK 181 (358)
T ss_pred EEeecccEEEEEeeccCc--ccHHHHHHHhhhcceeeccCCCCCcccccccc
Confidence 888899999999999854 44556788899988877777776565666554
No 184
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.31 E-value=1.1e-11 Score=119.43 Aligned_cols=113 Identities=25% Similarity=0.289 Sum_probs=75.1
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCcc---CC-CC-e-------------eeeccceeecCCCCCCccccccceEEecCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIA---DY-PF-T-------------TLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia---~~-pf-T-------------Tl~p~~g~v~~~~~~~~~~~~~~i~iiDtP 335 (421)
.|+++|.+|+|||||+++|+...-.+. .. .. | |.......+.. ...++.++|||
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~--------~~~~i~liDTP 72 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW--------EDTKVNLIDTP 72 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE--------CCEEEEEEeCC
Confidence 489999999999999999976432211 00 01 1 11111112211 13579999999
Q ss_pred cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
|+.+. ......+++.+|++++|+|+++.... +.+.+++.+.. .++|+++|+||+|+..+
T Consensus 73 G~~~f-------~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~-----~~~P~iivvNK~D~~~a 131 (237)
T cd04168 73 GHMDF-------IAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK-----LNIPTIIFVNKIDRAGA 131 (237)
T ss_pred Cccch-------HHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECccccCC
Confidence 98653 22345677889999999999876533 34556666655 36899999999999864
No 185
>CHL00071 tufA elongation factor Tu
Probab=99.30 E-value=1.1e-11 Score=128.48 Aligned_cols=117 Identities=21% Similarity=0.194 Sum_probs=78.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc----------------cCCCCeeeeccceeecCCCCCCccccccceEEecCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP 335 (421)
..+|+++|.+|+|||||+++|++....+ ....++|.+.....+... ..++.++|||
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--------~~~~~~iDtP 83 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE--------NRHYAHVDCP 83 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC--------CeEEEEEECC
Confidence 3689999999999999999998752211 112455655543333221 2478999999
Q ss_pred cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCC
Q 014655 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYD 409 (421)
Q Consensus 336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e 409 (421)
|+.+ +.....+.+..+|++++|+|+......++.+ +...+.. .++| +|+|+||+|+.+.++
T Consensus 84 Gh~~-------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~~-----~g~~~iIvvvNK~D~~~~~~ 145 (409)
T CHL00071 84 GHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAKQ-----VGVPNIVVFLNKEDQVDDEE 145 (409)
T ss_pred ChHH-------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEEEccCCCCHHH
Confidence 9643 2334456678899999999998654333333 4444544 3578 678999999986543
No 186
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.30 E-value=1.2e-11 Score=133.60 Aligned_cols=117 Identities=23% Similarity=0.242 Sum_probs=81.8
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
..+.|+++|.+|+|||||+++|.+.+......++.|.+.....+.... ...++||||||+.+.. ..
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-------~~~i~~iDTPGhe~F~-------~~ 151 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-------GKMITFLDTPGHEAFT-------SM 151 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-------CcEEEEEECCCCcchh-------hH
Confidence 447899999999999999999998765555556666554333333211 1279999999986531 12
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+.+..+|++++|+|+.+....+..+.+ ..+.. .+.|+++|+||+|+...
T Consensus 152 r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~~-----~~vPiIVviNKiDl~~~ 202 (587)
T TIGR00487 152 RARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAKA-----ANVPIIVAINKIDKPEA 202 (587)
T ss_pred HHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcccccC
Confidence 23557789999999999876544444433 23332 46899999999999753
No 187
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.30 E-value=1.2e-11 Score=114.10 Aligned_cols=116 Identities=21% Similarity=0.203 Sum_probs=76.7
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
+|+++|..++|||||++++...+.. ..|..|. .+-....+..+. ....+.+|||+|..+.. ....
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~------~~~~l~iwDt~G~~~~~-------~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRG------TEITFSIWDLGGQREFI-------NMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECC------EEEEEEEEeCCCchhHH-------HhhH
Confidence 7899999999999999999876432 2232221 111111222211 12468999999975431 1122
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.++..||++++|+|++++.+.++...+.+++..+.+ ...| ++|+||+|+..
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFA 118 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccc
Confidence 356889999999999988777777677777766543 2355 68899999963
No 188
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.30 E-value=1.6e-11 Score=119.89 Aligned_cols=113 Identities=24% Similarity=0.262 Sum_probs=74.2
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc---cC-CCCe--------------eeeccceeecCCCCCCccccccceEEecCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI---AD-YPFT--------------TLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i---a~-~pfT--------------Tl~p~~g~v~~~~~~~~~~~~~~i~iiDtP 335 (421)
+|+|+|.+|||||||+++|......+ .. ...+ |.......+... ..+++++|||
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--------~~~i~liDtP 72 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--------GHKINLIDTP 72 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--------CEEEEEEECc
Confidence 48999999999999999997532111 00 0111 222222222221 3478999999
Q ss_pred cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
|..+. .......+..+|++++|+|++....... ..+++.+.. .+.|+++|+||+|+...
T Consensus 73 G~~~f-------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~-----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 73 GYADF-------VGETRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE-----AGIPRIIFINKMDRERA 131 (268)
T ss_pred CHHHH-------HHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECCccCCC
Confidence 98653 2234566788999999999987654433 334445554 46899999999998865
No 189
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.29 E-value=9.9e-12 Score=129.24 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=76.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCCCC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLG 321 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~~ 321 (421)
.+|+++|.+|+|||||+++|+.....+. ..+++|++.....+...
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~---- 82 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD---- 82 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC----
Confidence 5799999999999999999985432221 14566777666555433
Q ss_pred ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCC--CCChhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 014655 322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVL 399 (421)
Q Consensus 322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~kP~IIVl 399 (421)
...+.++||||+.+. .......+..+|++++|+|+++ ....+..+ .+..+..+. ..|+++|+
T Consensus 83 ----~~~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~-~~~~~~~~~----~~~iivvi 146 (425)
T PRK12317 83 ----KYYFTIVDCPGHRDF-------VKNMITGASQADAAVLVVAADDAGGVMPQTRE-HVFLARTLG----INQLIVAI 146 (425)
T ss_pred ----CeEEEEEECCCcccc-------hhhHhhchhcCCEEEEEEEcccCCCCCcchHH-HHHHHHHcC----CCeEEEEE
Confidence 347999999997442 2223344678999999999986 32222222 333333321 24689999
Q ss_pred eCCCCCC
Q 014655 400 NKIDLPE 406 (421)
Q Consensus 400 NK~Dl~~ 406 (421)
||+|+..
T Consensus 147 NK~Dl~~ 153 (425)
T PRK12317 147 NKMDAVN 153 (425)
T ss_pred Ecccccc
Confidence 9999975
No 190
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=7.7e-12 Score=112.35 Aligned_cols=67 Identities=27% Similarity=0.283 Sum_probs=48.1
Q ss_pred ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (421)
Q Consensus 328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~ 402 (421)
.+.|+||||+.+...... ....+++..+|+++||+|+.+.....+.+.+.+.+... ...+++|+||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-----~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-----KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-----CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-----CCeEEEEEcCC
Confidence 599999999987544333 33455678999999999998866556666666666542 34499999995
No 191
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.29 E-value=1.5e-11 Score=116.67 Aligned_cols=114 Identities=21% Similarity=0.189 Sum_probs=72.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-------------------------------cCCCCeeeeccceeecCCCCCCc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDPTLGA 322 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-------------------------------a~~pfTTl~p~~g~v~~~~~~~~ 322 (421)
.|+++|.+++|||||+.+|...--.+ ....++|++.....+...
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-----
Confidence 48999999999999999995321111 112344555544444332
Q ss_pred cccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC------hhhHHHHHHHHHhcCCCCCCCCEE
Q 014655 323 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP------VNDYRTVKEELRMYNPDYLERPFI 396 (421)
Q Consensus 323 ~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~------~~~~~~l~~eL~~~~~~l~~kP~I 396 (421)
+..+.++||||+.+. ...+.+.+..+|++|+|||+++... ..+....+..+..+ ..+|++
T Consensus 76 ---~~~i~liDtpG~~~~-------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ii 141 (219)
T cd01883 76 ---KYRFTILDAPGHRDF-------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL----GVKQLI 141 (219)
T ss_pred ---CeEEEEEECCChHHH-------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc----CCCeEE
Confidence 357999999997543 2345566788999999999987421 11112222222222 236899
Q ss_pred EEEeCCCCCC
Q 014655 397 VVLNKIDLPE 406 (421)
Q Consensus 397 IVlNK~Dl~~ 406 (421)
+|+||+|+..
T Consensus 142 ivvNK~Dl~~ 151 (219)
T cd01883 142 VAVNKMDDVT 151 (219)
T ss_pred EEEEcccccc
Confidence 9999999984
No 192
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.29 E-value=1.4e-11 Score=118.57 Aligned_cols=117 Identities=18% Similarity=0.173 Sum_probs=78.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|++||.++||||||++++..... ...|..|........+..+ .....+.||||+|..... .+ ..
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~pTi~~~~~~~i~~~------~~~v~l~iwDTaG~e~~~----~~---~~ 79 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTAGLETE------EQRVELSLWDTSGSPYYD----NV---RP 79 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCC-CCCcCCceeeeeEEEEEEC------CEEEEEEEEeCCCchhhH----HH---HH
Confidence 5899999999999999999987542 2233222211111111111 112478999999964321 11 12
Q ss_pred HhcccCCEEEEEeeCCCCCChhh-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~-~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.++..||++++|+|+++..+++. ...|..++..+. ...|+++|+||+|+..
T Consensus 80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~ 131 (232)
T cd04174 80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC---PSTRILLIGCKTDLRT 131 (232)
T ss_pred HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 35689999999999998887776 356777777654 3579999999999864
No 193
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.29 E-value=1.9e-11 Score=135.34 Aligned_cols=118 Identities=22% Similarity=0.227 Sum_probs=83.0
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
....+.|+|+|+.|+|||||+++|...+.......+.|.+.....+... +..++||||||+.+. .
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--------~~~ItfiDTPGhe~F-------~ 351 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--------GGKITFLDTPGHEAF-------T 351 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--------CEEEEEEECCCCccc-------h
Confidence 3466789999999999999999998766544455566655443333322 247999999998653 1
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
....+.+..+|++|+|||+.+....+..+.+ ..+.. .+.|+|||+||+|+...
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i-~~a~~-----~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAI-NHAKA-----AGVPIIVAINKIDKPGA 404 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHH-HHHHh-----cCCcEEEEEECcccccc
Confidence 2233556789999999999876544444433 33333 46899999999999754
No 194
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.28 E-value=5.8e-12 Score=116.82 Aligned_cols=120 Identities=21% Similarity=0.275 Sum_probs=71.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
..|.|+|+.|||||+|+..|+..... ...|...++....... .....+.++|+||+.. +...++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~---~T~tS~e~n~~~~~~~------~~~~~~~lvD~PGH~r-------lr~~~~ 67 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTV---PTVTSMENNIAYNVNN------SKGKKLRLVDIPGHPR-------LRSKLL 67 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEECCGSS------TCGTCECEEEETT-HC-------CCHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcC---CeeccccCCceEEeec------CCCCEEEEEECCCcHH-------HHHHHH
Confidence 46899999999999999999987421 1223344444432211 1135799999999854 333444
Q ss_pred H---hcccCCEEEEEeeCCCC--CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 R---HLRRTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~---~i~radvIl~VvD~s~~--~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+ ++..+..||||||++.- +..+..+.|.+.|..-.......|++|++||.|+..+.
T Consensus 68 ~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 68 DELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred HhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 4 48889999999998741 11222344444444332223568999999999998764
No 195
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.1e-11 Score=114.98 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=92.3
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeee--eccceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~ 345 (421)
+..-+.+|.|+|..|+|||.|+.++....-. ..| .+|+ +-....++.+.. ..+++||||.|...
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~-e~~-~sTIGVDf~~rt~e~~gk------~iKlQIWDTAGQER------ 70 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFT-ESY-ISTIGVDFKIRTVELDGK------TIKLQIWDTAGQER------ 70 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcc-hhh-cceeeeEEEEEEeeecce------EEEEEeeeccccHH------
Confidence 3456789999999999999999999875421 111 2232 333334443321 24799999999733
Q ss_pred chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
....+..+.+.|+.||+|+|++...++..+..|..|++.|.. .+.|.++|.||+|+.+..
T Consensus 71 -Frtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~ 130 (205)
T KOG0084|consen 71 -FRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKR 130 (205)
T ss_pred -HhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc--CCCCeEEEeeccccHhhe
Confidence 234456778899999999999999889999999999998865 457999999999998754
No 196
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.28 E-value=6.8e-12 Score=111.44 Aligned_cols=132 Identities=27% Similarity=0.339 Sum_probs=94.3
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
.+.-..+.+||.-|+|||||+|.+...+-. .+...|.--+...+.-. ...+.++|+||.... .
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~--edmiptvGfnmrk~tkg--------nvtiklwD~gGq~rf-------r 79 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYL--EDMIPTVGFNMRKVTKG--------NVTIKLWDLGGQPRF-------R 79 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccch--hhhcccccceeEEeccC--------ceEEEEEecCCCccH-------H
Confidence 344567889999999999999998764321 22233333333333221 246899999997543 3
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHh--cCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM--YNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN 420 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~--~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~ 420 (421)
..+-++.+.+++|+||||+++++.++. -++||.. +.+.+..+|+++..||.|++++-.....+.++||.
T Consensus 80 smWerycR~v~aivY~VDaad~~k~~~---sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~ 150 (186)
T KOG0075|consen 80 SMWERYCRGVSAIVYVVDAADPDKLEA---SRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLS 150 (186)
T ss_pred HHHHHHhhcCcEEEEEeecCCcccchh---hHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcc
Confidence 345667788999999999998765443 3344443 45677899999999999999998888888888874
No 197
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.26 E-value=2.7e-11 Score=133.31 Aligned_cols=118 Identities=23% Similarity=0.195 Sum_probs=80.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc------cC------------CCCeeeeccceeecCCCCCCccccccceEE
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI------AD------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i------a~------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~i 331 (421)
..+.+|+++|.+|+|||||+++|......+ .+ ...+|++.....+... +.++.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--------~~~i~l 79 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--------GHRINI 79 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--------CeEEEE
Confidence 446789999999999999999996432111 11 2334444444444332 357999
Q ss_pred ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+||||+.+.. ......++.+|++++|+|+......++. .++..+.. .++|+++|+||+|+..+.
T Consensus 80 iDTPG~~~~~-------~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~-----~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 80 IDTPGHVDFT-------VEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR-----YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred EECCCCcchh-------HHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH-----cCCCEEEEEECCCCCCCC
Confidence 9999997531 1345667889999999999876544443 34445554 358999999999998654
No 198
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.25 E-value=1.9e-11 Score=108.55 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=83.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
+|+++|.+++|||||++++.+.... ..+..|. .+.....+.... ....+.+||++|..+.. ....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~------~~~~l~i~D~~g~~~~~-------~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-ENYIPTIGIDSYSKEVSIDG------KPVNLEIWDTSGQERFD-------SLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-SSSETTSSEEEEEEEEEETT------EEEEEEEEEETTSGGGH-------HHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-cccccccccccccccccccc------ccccccccccccccccc-------cccc
Confidence 6899999999999999999986532 2222222 222222222221 23479999999965431 1112
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.+|++++|+|++++.+.+.+..|..++..+.+ ...|+++|.||.|+.+.
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~ 119 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDE 119 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGG
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccceeeecccccccc
Confidence 346789999999999998888888888888887765 35899999999998863
No 199
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.25 E-value=2.5e-11 Score=133.38 Aligned_cols=121 Identities=19% Similarity=0.162 Sum_probs=82.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
...+.|+|+|++|+|||||+++|+.........++.|.+.....+.... ......++||||||+... ..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~----~~~~~kItfiDTPGhe~F-------~~ 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEY----KDENQKIVFLDTPGHEAF-------SS 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEe----cCCceEEEEEECCcHHHH-------HH
Confidence 5668999999999999999999998765544444555443322222110 001247999999997543 22
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+.+..+|++|+|||+.+....+..+.+. .+.. .+.|+|+|+||+|+...
T Consensus 311 mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~-~~k~-----~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 311 MRSRGANVTDIAILIIAADDGVKPQTIEAIN-YIQA-----ANVPIIVAINKIDKANA 362 (742)
T ss_pred HHHHHHHHCCEEEEEEECcCCCChhhHHHHH-HHHh-----cCceEEEEEECCCcccc
Confidence 2345678899999999998765444444433 3333 46899999999999764
No 200
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.25 E-value=3.8e-11 Score=114.87 Aligned_cols=119 Identities=19% Similarity=0.143 Sum_probs=72.9
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccC-CCC---------------eeeeccceeecCCCC--CCccccccceEEecCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD-YPF---------------TTLMPNLGRLDGDPT--LGAEKYSSEATLADLP 335 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~-~pf---------------TTl~p~~g~v~~~~~--~~~~~~~~~i~iiDtP 335 (421)
.|+++|..++|||||+.+|....-.+.. ... .|+......+.+... .........+.++|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999764322210 011 111111111111100 0000113468999999
Q ss_pred cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
|+.+. .......+..+|++++|+|+......+....+. .+.. .+.|+++|+||+|+.
T Consensus 82 G~~~f-------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~-----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDF-------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK-----ERVKPVLVINKIDRL 138 (222)
T ss_pred Ccccc-------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH-----cCCCEEEEEECCCcc
Confidence 98764 234456778999999999998765544433333 3332 357999999999986
No 201
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.25 E-value=3.4e-11 Score=120.09 Aligned_cols=127 Identities=20% Similarity=0.230 Sum_probs=78.9
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
...+|+++|.+|+||||++|+|++.+... +.+..+|..+........ +.++.|+||||+.+....++....
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--------G~~l~VIDTPGL~d~~~~~e~~~~ 108 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--------GFTLNIIDTPGLIEGGYINDQAVN 108 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--------CeEEEEEECCCCCchHHHHHHHHH
Confidence 34589999999999999999999988643 555555555543332211 357999999999876332222111
Q ss_pred HHHHhc--ccCCEEEEEeeCCCC-CChhhHHHHHHHHH-hcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRHL--RRTRLLVHVIDAAAE-NPVNDYRTVKEELR-MYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~i--~radvIl~VvD~s~~-~~~~~~~~l~~eL~-~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
....++ ...|++|||.++... ....+.. +.+.+. .|... .-.++|+|+|++|..+.
T Consensus 109 ~ik~~l~~~g~DvVLyV~rLD~~R~~~~Dkq-lLk~Iqe~FG~~-iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 109 IIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQ-VIRAITDSFGKD-IWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHHhhcCCCCEEEEEeccCcccCCHHHHH-HHHHHHHHhhhh-hhccEEEEEECCccCCC
Confidence 111112 258999999655432 2223333 333333 33322 34679999999997753
No 202
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.24 E-value=4.6e-11 Score=112.06 Aligned_cols=124 Identities=23% Similarity=0.218 Sum_probs=72.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc--cC-CCCeeeeccceeecCC---------C----------CC------Ccccc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI--AD-YPFTTLMPNLGRLDGD---------P----------TL------GAEKY 325 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i--a~-~pfTTl~p~~g~v~~~---------~----------~~------~~~~~ 325 (421)
.|+++|+.++|||||+.+|++..... .. .-..|.......+... + .. .....
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 68999999999999999998652111 00 0011111111111100 0 00 00001
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
...+.||||||..+ +...++..+..+|++++|+|++.+....+....+..+..+. ..|+++|+||+|+.
T Consensus 82 ~~~i~~iDtPG~~~-------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~----~~~iiivvNK~Dl~ 150 (203)
T cd01888 82 VRHVSFVDCPGHEI-------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG----LKHIIIVQNKIDLV 150 (203)
T ss_pred ccEEEEEECCChHH-------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC----CCcEEEEEEchhcc
Confidence 25799999999632 44566777888999999999987432222222333444322 25789999999997
Q ss_pred CCC
Q 014655 406 EMY 408 (421)
Q Consensus 406 ~~~ 408 (421)
...
T Consensus 151 ~~~ 153 (203)
T cd01888 151 KEE 153 (203)
T ss_pred CHH
Confidence 643
No 203
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.24 E-value=6.3e-11 Score=111.42 Aligned_cols=111 Identities=17% Similarity=0.139 Sum_probs=75.5
Q ss_pred cCCCCCChhHHHHHHhcCCCCccCCCCeeeeccc--eeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhc
Q 014655 278 VGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHL 355 (421)
Q Consensus 278 VG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~--g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i 355 (421)
||.++||||||++++...... ..|.. |+.... ..+..+. ....+.||||||..+.. .+ ...++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~~~~-Tig~~~~~~~~~~~~------~~~~l~iwDt~G~e~~~----~l---~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KKYVA-TLGVEVHPLVFHTNR------GPIRFNVWDTAGQEKFG----GL---RDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CCCCC-ceeEEEEEEEEEECC------EEEEEEEEECCCchhhh----hh---hHHHh
Confidence 699999999999999865421 22222 221111 1111110 12478999999975431 11 23457
Q ss_pred ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 356 RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 356 ~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
+.+|++|+|+|+++..+.+....|..++..+. .+.|+++|+||+|+..
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~ 113 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKD 113 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 88999999999998877777777777777654 3689999999999864
No 204
>PLN03127 Elongation factor Tu; Provisional
Probab=99.24 E-value=3.9e-11 Score=125.80 Aligned_cols=119 Identities=21% Similarity=0.240 Sum_probs=78.2
Q ss_pred hhhceecccCCCCCChhHHHHHHhcC------CCCc----------cCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHA------KPDI----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~------~~~i----------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD 333 (421)
+...+|+++|.+|+|||||+++|++. .... ....++|++.....++.. ..+++++|
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--------~~~i~~iD 130 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--------KRHYAHVD 130 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--------CeEEEEEE
Confidence 44467999999999999999999732 1000 112566666544333322 24789999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCC
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYD 409 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e 409 (421)
|||+.+ +.......+..+|++++|+|+......++ +.+...+.. .+.| +|+|+||+|+.+.++
T Consensus 131 tPGh~~-------f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~-----~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 131 CPGHAD-------YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-----VGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred CCCccc-------hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH-----cCCCeEEEEEEeeccCCHHH
Confidence 999853 22333345567999999999986544343 334445554 4578 478899999986443
No 205
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.24 E-value=4.1e-11 Score=113.01 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=71.9
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccC----------C---------CCeeeeccceeecCCCCCCccccccceEEecC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD----------Y---------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~----------~---------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt 334 (421)
+|+++|.+++|||||+++|+.....+.. + ...|.......+..... ......+.++||
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~---~~~~~~i~iiDt 78 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDS---KGKSYLFNIIDT 78 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcC---CCCEEEEEEEEC
Confidence 6899999999999999999875432210 1 01111111111111000 011246899999
Q ss_pred CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
||+.+. .......+..+|++++|+|++....... +.+...+.. ...|+++|+||+|+.
T Consensus 79 pG~~~f-------~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGHVNF-------MDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred CCCcch-------HHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECcccC
Confidence 998653 2234566789999999999987654433 223333332 348999999999986
No 206
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.22 E-value=4.4e-11 Score=107.72 Aligned_cols=111 Identities=17% Similarity=0.131 Sum_probs=75.7
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.++||||||+.++...... ..++ +|.......+..+. ....+.+|||+|.... .
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~-~~~~-~~~~~~~~~i~~~~------~~~~l~i~D~~g~~~~------------~ 61 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV-QLES-PEGGRFKKEVLVDG------QSHLLLIRDEGGAPDA------------Q 61 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCCC-CCccceEEEEEECC------EEEEEEEEECCCCCch------------h
Confidence 6899999999999999988754321 1121 11111111122211 1236899999997421 2
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
..+.+|++++|+|++++.+++....++.++..+. ...+.|+++|.||+|+.
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAIS 112 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEeeHHHhh
Confidence 3467999999999999888888777877777653 22457999999999985
No 207
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.22 E-value=4.4e-11 Score=129.22 Aligned_cols=114 Identities=22% Similarity=0.168 Sum_probs=78.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.|+++|.+|+|||||+++|++..... ....+.|.+.....+... +..+.+|||||+.+ +...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--------~~~v~~iDtPGhe~-------f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--------DYRLGFIDVPGHEK-------FISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--------CEEEEEEECCCHHH-------HHHH
Confidence 58999999999999999999754221 223456666554444432 24789999999643 2334
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~ 408 (421)
.+..+..+|++++|||+++....+..+.+ ..+.. .+.| ++||+||+|+.+.+
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~ehl-~il~~-----lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEHL-AVLDL-----LGIPHTIVVITKADRVNEE 119 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCCCCCHH
Confidence 55667889999999999875434443333 34443 3567 99999999998644
No 208
>PRK00007 elongation factor G; Reviewed
Probab=99.22 E-value=5.5e-11 Score=130.96 Aligned_cols=118 Identities=21% Similarity=0.168 Sum_probs=81.6
Q ss_pred hhhceecccCCCCCChhHHHHHHhc---CCCCc---c------------CCCCeeeeccceeecCCCCCCccccccceEE
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITH---AKPDI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~---~~~~i---a------------~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~i 331 (421)
..+.+|+|+|.+|+|||||+++|.. ....+ . ....+|++.....+... +..+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--------~~~~~l 79 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--------DHRINI 79 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--------CeEEEE
Confidence 3467999999999999999999963 21111 1 13345555444444322 357999
Q ss_pred ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+||||+.+. .....+.+..+|++|+|+|+......++. .++..+.. .++|+|+++||+|+..++
T Consensus 80 iDTPG~~~f-------~~ev~~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~-----~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 80 IDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADK-----YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred EeCCCcHHH-------HHHHHHHHHHcCEEEEEEECCCCcchhhH-HHHHHHHH-----cCCCEEEEEECCCCCCCC
Confidence 999998753 12345667889999999999876544443 35555555 458999999999998644
No 209
>PRK12739 elongation factor G; Reviewed
Probab=99.22 E-value=4.7e-11 Score=131.42 Aligned_cols=118 Identities=22% Similarity=0.163 Sum_probs=81.0
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCC---Cc---c------------CCCCeeeeccceeecCCCCCCccccccceEE
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKP---DI---A------------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~---~i---a------------~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~i 331 (421)
..+.+|+++|.+|+|||||+++|....- .+ . ....+|++.....+... +.++.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--------~~~i~l 77 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--------GHRINI 77 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--------CEEEEE
Confidence 3467899999999999999999964211 11 1 12334444433333322 357999
Q ss_pred ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+||||+.+. .....+.+..+|++++|+|+......++ +.++..+.. .++|+|+++||+|+..++
T Consensus 78 iDTPG~~~f-------~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~-----~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 78 IDTPGHVDF-------TIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK-----YGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred EcCCCHHHH-------HHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECCCCCCCC
Confidence 999998653 2245677888999999999987654444 345555554 358999999999998643
No 210
>PRK12736 elongation factor Tu; Reviewed
Probab=99.21 E-value=6.4e-11 Score=122.26 Aligned_cols=120 Identities=21% Similarity=0.211 Sum_probs=78.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc----------------cCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD 333 (421)
+.-.+|+++|.+++|||||+++|++..... ....++|++.....+... ...+.++|
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~--------~~~i~~iD 81 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE--------KRHYAHVD 81 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC--------CcEEEEEE
Confidence 344689999999999999999998632100 013455555433222211 24789999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCCc
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYDD 410 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e~ 410 (421)
|||+.+. ....+..+..+|++++|+|+.......+.+ ++..+.. .++| +|+|+||+|+.+.++.
T Consensus 82 tPGh~~f-------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~~-----~g~~~~IvviNK~D~~~~~~~ 146 (394)
T PRK12736 82 CPGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLARQ-----VGVPYLVVFLNKVDLVDDEEL 146 (394)
T ss_pred CCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH-----cCCCEEEEEEEecCCcchHHH
Confidence 9997532 233455667899999999998754444433 3344444 3577 6788999999855443
No 211
>PRK12735 elongation factor Tu; Reviewed
Probab=99.20 E-value=7.8e-11 Score=121.71 Aligned_cols=117 Identities=24% Similarity=0.242 Sum_probs=75.5
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC-----CCc-----------cCCCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK-----PDI-----------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~-----~~i-----------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt 334 (421)
...+|+++|.+|+|||||+++|+... ... ....+.|.+.....+... ..++.++||
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~--------~~~i~~iDt 82 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA--------NRHYAHVDC 82 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC--------CcEEEEEEC
Confidence 34589999999999999999998621 110 113345555433222221 247899999
Q ss_pred CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCCC
Q 014655 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEMY 408 (421)
Q Consensus 335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl~~~~ 408 (421)
||+.+ +.......+..+|++++|+|+......+. ..++..+.. .+.|.+ +|+||+|+.+.+
T Consensus 83 PGh~~-------f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~-----~gi~~iivvvNK~Dl~~~~ 144 (396)
T PRK12735 83 PGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-----VGVPYIVVFLNKCDMVDDE 144 (396)
T ss_pred CCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH-----cCCCeEEEEEEecCCcchH
Confidence 99743 23344566778999999999986433333 333444443 357865 579999997543
No 212
>PLN00023 GTP-binding protein; Provisional
Probab=99.20 E-value=9.3e-11 Score=117.72 Aligned_cols=126 Identities=19% Similarity=0.160 Sum_probs=81.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeec--cceeecCCC-------CCCccccccceEEecCCcccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP--NLGRLDGDP-------TLGAEKYSSEATLADLPGLIEGAHL 343 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p--~~g~v~~~~-------~~~~~~~~~~i~iiDtPGlie~a~~ 343 (421)
.+|+|+|..+||||||++++.+..... .+.. |+.. ....+.++. ...+......+.||||+|.....
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~-~~~p-TIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr-- 97 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIA-RPPQ-TIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK-- 97 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCccc-ccCC-ceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh--
Confidence 589999999999999999998765321 2211 2211 111222110 00000112468999999975431
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC----------CCCCCCEEEEEeCCCCCCC
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP----------DYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~----------~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+. -.+++.+|++|+|+|+++..+.+.+..|.+++..... .....|++||.||+||...
T Consensus 98 --sL~---~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 --DCR---SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred --hhh---HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 122 2346789999999999998888888888888776521 1125799999999999654
No 213
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.20 E-value=6.4e-11 Score=110.78 Aligned_cols=122 Identities=19% Similarity=0.105 Sum_probs=75.4
Q ss_pred ceecccCCCCCChhHHHH-HHhcCCCC----ccCCCCeee--eccceeecCC--CCCCccccccceEEecCCcccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLA-AITHAKPD----IADYPFTTL--MPNLGRLDGD--PTLGAEKYSSEATLADLPGLIEGAHL 343 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLn-aLt~~~~~----ia~~pfTTl--~p~~g~v~~~--~~~~~~~~~~~i~iiDtPGlie~a~~ 343 (421)
.+|+++|.++||||||+. .+.+.... ...|..|.- +.....+... ...........+.+|||+|..+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 489999999999999995 56543221 122322221 1000000000 00000011347899999997531
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
+.. .+++.||++++|+|++++.+.+... .|.+++..+. .+.|+++|+||+||..
T Consensus 80 ---~~~---~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 ---DRR---FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRY 134 (195)
T ss_pred ---hhc---ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccc
Confidence 111 2468899999999999888777775 4666776543 3679999999999864
No 214
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.20 E-value=7.4e-11 Score=127.72 Aligned_cols=120 Identities=23% Similarity=0.250 Sum_probs=78.5
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCC---------------CCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG 336 (421)
+.+|+++|.+++|||||+++|......+... .+.|.......+.+.. . +.....+.+|||||
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~-~--~g~~~~l~liDTPG 79 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKA-K--DGETYVLNLIDTPG 79 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEc-C--CCCEEEEEEEECCC
Confidence 5689999999999999999998754322111 1222222211121110 0 00124789999999
Q ss_pred ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+.+. .....+.++.||++|+|+|+++....++...++..+. .+.|+++|+||+|+...
T Consensus 80 ~~dF-------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~ 137 (595)
T TIGR01393 80 HVDF-------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSA 137 (595)
T ss_pred cHHH-------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCcc
Confidence 8764 2234566788999999999998766666555554443 35799999999999754
No 215
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.19 E-value=6e-11 Score=109.23 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=74.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+++|||||+++|...... ..+..|+.+.....+.... ....+.++||||..+... +.. .
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~~~----~~~---~ 68 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFP-EEYHPTVFENYVTDCRVDG------KPVQLALWDTAGQEEYER----LRP---L 68 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEECC------EEEEEEEEECCCChhccc----cch---h
Confidence 7999999999999999999854421 1222222222122222111 123578999999754321 111 2
Q ss_pred hcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.+..+|++++|+|+++.++.+++. .|..++.... .+.|+++|.||+|+..
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~ 119 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQ 119 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhh
Confidence 357899999999998776666654 3555665433 3589999999999854
No 216
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=9.6e-11 Score=109.75 Aligned_cols=122 Identities=19% Similarity=0.164 Sum_probs=91.0
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCee--eeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT--LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT--l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
..+.+|.+||.++||||+|+-++....... .+ .+| ++-...++..+. ....+++|||.|....
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~-~~-~sTiGIDFk~kti~l~g------~~i~lQiWDtaGQerf------- 74 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNT-SF-ISTIGIDFKIKTIELDG------KKIKLQIWDTAGQERF------- 74 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcC-Cc-cceEEEEEEEEEEEeCC------eEEEEEEEEcccchhH-------
Confidence 456799999999999999999998765322 11 122 233333444332 1357899999997543
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+-.+++.|+.+++|+|+++..+++....|+.+++++.+. ..|.++|.||+|+....
T Consensus 75 ~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~~R 133 (207)
T KOG0078|consen 75 RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEEKR 133 (207)
T ss_pred HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccccc
Confidence 445667889999999999999988888888888888887653 68999999999998743
No 217
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.18 E-value=1e-10 Score=109.26 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=68.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-cC----CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~----~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
.+|+++|.+|||||||+|+|++..... .. ..-+|... ..+... . ...+.++||||+.+... .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~------~-~~~l~l~DtpG~~~~~~----~ 68 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHP------K-FPNVTLWDLPGIGSTAF----P 68 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecC------C-CCCceEEeCCCCCcccC----C
Confidence 379999999999999999999854211 10 00111111 111100 0 13689999999875421 1
Q ss_pred hHHHHHh--cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 348 GRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 348 ~~~fL~~--i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
...+++. +..+|++++|.|.. .. +.-..+.+++..+ .+|+++|+||+|+..
T Consensus 69 ~~~~l~~~~~~~~d~~l~v~~~~--~~-~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~ 121 (197)
T cd04104 69 PDDYLEEMKFSEYDFFIIISSTR--FS-SNDVKLAKAIQCM-----GKKFYFVRTKVDRDL 121 (197)
T ss_pred HHHHHHHhCccCcCEEEEEeCCC--CC-HHHHHHHHHHHHh-----CCCEEEEEecccchh
Confidence 2233443 46789998885532 22 2223455566653 589999999999954
No 218
>PRK00049 elongation factor Tu; Reviewed
Probab=99.18 E-value=9.7e-11 Score=121.02 Aligned_cols=119 Identities=24% Similarity=0.252 Sum_probs=78.3
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCC----------c------cCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPD----------I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~----------i------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD 333 (421)
+...+|+++|.+++|||||+++|+..... . ....++|++.....+... +.++.++|
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--------~~~i~~iD 81 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE--------KRHYAHVD 81 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC--------CeEEEEEE
Confidence 34468999999999999999999863110 0 113455666543333221 34789999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCCCC
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEMYD 409 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl~~~~e 409 (421)
|||+.+ +.......+..+|++++|+|+..+....+ +.++..+.. .+.|.+ +|+||+|+...++
T Consensus 82 tPG~~~-------f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~-----~g~p~iiVvvNK~D~~~~~~ 145 (396)
T PRK00049 82 CPGHAD-------YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-----VGVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred CCCHHH-------HHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH-----cCCCEEEEEEeecCCcchHH
Confidence 999743 23334455688999999999987543333 334445554 357876 5899999986433
No 219
>PRK09866 hypothetical protein; Provisional
Probab=99.18 E-value=2.7e-10 Score=122.17 Aligned_cols=74 Identities=26% Similarity=0.394 Sum_probs=52.5
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.+++++||||+.+.. ...+.....+.+..+|+|+||+|+.......+ +.+.+.|...+ ...|+++|+||+|+.+
T Consensus 230 ~QIIFVDTPGIhk~~--~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~---K~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAG--QPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG---QSVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCcc--chHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC---CCCCEEEEEEcccCCC
Confidence 458999999997632 12245455567999999999999987544444 34566666532 1259999999999874
No 220
>PRK10218 GTP-binding protein; Provisional
Probab=99.17 E-value=1.7e-10 Score=125.02 Aligned_cols=116 Identities=19% Similarity=0.238 Sum_probs=78.3
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCc-cC---------------CCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-AD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt 334 (421)
.+.+|+++|..++|||||+++|+.....+ .. ....|.......+.+. +..+.+|||
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~--------~~~inliDT 75 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN--------DYRINIVDT 75 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC--------CEEEEEEEC
Confidence 46789999999999999999998642222 11 1223333333333322 357999999
Q ss_pred CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
||+.+. .......++.+|++++|+|++.....+. +.++..+.. .+.|.++|+||+|+..+
T Consensus 76 PG~~df-------~~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~-----~gip~IVviNKiD~~~a 135 (607)
T PRK10218 76 PGHADF-------GGEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA-----YGLKPIVVINKVDRPGA 135 (607)
T ss_pred CCcchh-------HHHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH-----cCCCEEEEEECcCCCCC
Confidence 998654 2234456788999999999987543333 334444443 46899999999998754
No 221
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.17 E-value=1.4e-10 Score=125.53 Aligned_cols=114 Identities=22% Similarity=0.273 Sum_probs=76.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccC----------------CCCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD----------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~----------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG 336 (421)
.+|+++|+.++|||||+++|+...-.+.. .-+.|.......+.+. +..+.++||||
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~--------~~kinlIDTPG 73 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN--------GTKINIVDTPG 73 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC--------CEEEEEEECCC
Confidence 57999999999999999999863221110 1122333322233322 35799999999
Q ss_pred ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+.+. .....+.+..+|++++|||+.... ..+.+.++..+.. .+.|+++|+||+|+..+
T Consensus 74 h~DF-------~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~-----~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 74 HADF-------GGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE-----LGLKPIVVINKIDRPSA 131 (594)
T ss_pred HHHH-------HHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH-----CCCCEEEEEECCCCCCc
Confidence 8654 223456678899999999998753 3344455555554 35899999999999754
No 222
>PLN03126 Elongation factor Tu; Provisional
Probab=99.16 E-value=1.3e-10 Score=122.63 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=77.7
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc----------------cCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD 333 (421)
+...+|+++|.+++|||||+++|+.....+ ....+.|++.....+... ...+.++|
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--------~~~i~liD 150 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--------NRHYAHVD 150 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--------CcEEEEEE
Confidence 344679999999999999999998632211 112233443333223221 34789999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCC
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYD 409 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e 409 (421)
|||+.+. .......+..+|++++|||+......+. +.++..+.. .++| +|+|+||+|+.+.++
T Consensus 151 tPGh~~f-------~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~-----~gi~~iIvvvNK~Dl~~~~~ 214 (478)
T PLN03126 151 CPGHADY-------VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ-----VGVPNMVVFLNKQDQVDDEE 214 (478)
T ss_pred CCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCeEEEEEecccccCHHH
Confidence 9997653 2334556678999999999987644333 334444554 3577 678999999986443
No 223
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.16 E-value=1.9e-10 Score=124.21 Aligned_cols=121 Identities=21% Similarity=0.146 Sum_probs=74.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC----------CccccccceEEecCCccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----------GAEKYSSEATLADLPGLIEGAH 342 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~----------~~~~~~~~i~iiDtPGlie~a~ 342 (421)
+-|+++|.+|+|||||+++|++..........+|.+.....+..+... ........+++|||||+...
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f-- 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF-- 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH--
Confidence 569999999999999999999875433222223332111111111000 00000024899999997543
Q ss_pred ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.......+..+|++++|+|+++....++++.+ ..+.. .+.|+++|+||+|+..
T Consensus 83 -----~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~~-----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 -----TNLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YKTPFVVAANKIDRIP 135 (590)
T ss_pred -----HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHHH-----cCCCEEEEEECCCccc
Confidence 11223456789999999999875544454433 33333 3689999999999974
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.15 E-value=1.3e-10 Score=119.84 Aligned_cols=119 Identities=21% Similarity=0.216 Sum_probs=77.2
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCC------C----c------cCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKP------D----I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~------~----i------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD 333 (421)
+.-..|+++|.+++|||||+++|+.... . . ....++|++.....+... +.++.++|
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~--------~~~~~liD 81 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE--------NRHYAHVD 81 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC--------CEEEEEEE
Confidence 3346899999999999999999974310 0 0 112455665543333211 24689999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCCCC
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLPEMYD 409 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl~~~~e 409 (421)
|||+.+. ....+..+..+|++++|+|+......++.+ ++..+.. .+.|.+ +|+||+|+.+.++
T Consensus 82 tpGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e-~l~~~~~-----~gi~~iIvvvNK~Dl~~~~~ 145 (394)
T TIGR00485 82 CPGHADY-------VKNMITGAAQMDGAILVVSATDGPMPQTRE-HILLARQ-----VGVPYIVVFLNKCDMVDDEE 145 (394)
T ss_pred CCchHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHH-----cCCCEEEEEEEecccCCHHH
Confidence 9998542 234456667899999999998754334333 3344444 356755 6899999986443
No 225
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.15 E-value=3.3e-10 Score=106.58 Aligned_cols=119 Identities=17% Similarity=0.116 Sum_probs=74.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||++++...... ..| .+|............ ..-...+.++||+|..+. ..+ ..
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~-~~~-~~t~~~~~~~~~~~~----~~~~i~i~~~Dt~g~~~~----~~~---~~ 76 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFE-KKY-IPTLGVEVHPLKFYT----NCGPICFNVWDTAGQEKF----GGL---RD 76 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCC-CCC-CCccceEEEEEEEEE----CCeEEEEEEEECCCchhh----hhh---hH
Confidence 58999999999999999765543311 111 122222221111100 001246899999996432 111 12
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+..++++++|+|+++..+......+...+.... .+.|+++|+||+|+.+.
T Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDR 128 (215)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCccc
Confidence 34567899999999998777666666666665443 35899999999998654
No 226
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.15 E-value=2.3e-10 Score=122.26 Aligned_cols=120 Identities=22% Similarity=0.221 Sum_probs=77.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCc---cC------CCCeee-------------eccceeecCCCCCCcccc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---AD------YPFTTL-------------MPNLGRLDGDPTLGAEKY 325 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~------~pfTTl-------------~p~~g~v~~~~~~~~~~~ 325 (421)
|...+.+|+|+|++++|||||+++|+...-.+ .. ...++. ......+.+.
T Consensus 6 ~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~-------- 77 (526)
T PRK00741 6 EVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR-------- 77 (526)
T ss_pred hhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC--------
Confidence 45667799999999999999999996322111 11 111111 1111112111
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
+..+.++||||+.+. .....+.+..+|++|+|+|++.... ...+.+++.... .+.|+++++||+|+.
T Consensus 78 ~~~inliDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~-----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 78 DCLINLLDTPGHEDF-------SEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL-----RDTPIFTFINKLDRD 144 (526)
T ss_pred CEEEEEEECCCchhh-------HHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh-----cCCCEEEEEECCccc
Confidence 347999999998653 2234566788999999999987543 333445555544 468999999999987
Q ss_pred CCC
Q 014655 406 EMY 408 (421)
Q Consensus 406 ~~~ 408 (421)
.+.
T Consensus 145 ~a~ 147 (526)
T PRK00741 145 GRE 147 (526)
T ss_pred ccC
Confidence 654
No 227
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.15 E-value=1.5e-10 Score=120.52 Aligned_cols=116 Identities=21% Similarity=0.184 Sum_probs=74.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTL 320 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~ 320 (421)
..+|+++|.+++|||||+++|+...-.+. ...+.|++.....+...
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~--- 83 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD--- 83 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC---
Confidence 46899999999999999999975321110 12245555554444432
Q ss_pred CccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChh--hHHHHHHHHHhcCCCCCCCCEEEE
Q 014655 321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVV 398 (421)
Q Consensus 321 ~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~--~~~~l~~eL~~~~~~l~~kP~IIV 398 (421)
...+.|+||||+.+ +....+..+..+|++++|+|+++..... +.......+..+ ...|+++|
T Consensus 84 -----~~~i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~----~~~~iIVv 147 (426)
T TIGR00483 84 -----KYEVTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL----GINQLIVA 147 (426)
T ss_pred -----CeEEEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc----CCCeEEEE
Confidence 24799999999643 2334445567899999999998763221 111111222222 12578999
Q ss_pred EeCCCCCC
Q 014655 399 LNKIDLPE 406 (421)
Q Consensus 399 lNK~Dl~~ 406 (421)
+||+|+.+
T Consensus 148 iNK~Dl~~ 155 (426)
T TIGR00483 148 INKMDSVN 155 (426)
T ss_pred EEChhccC
Confidence 99999975
No 228
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.14 E-value=1.8e-10 Score=118.15 Aligned_cols=124 Identities=24% Similarity=0.291 Sum_probs=84.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC----CCC-----------c-cCCCC---eeeeccc---eeecCCCCCCccccccceE
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA----KPD-----------I-ADYPF---TTLMPNL---GRLDGDPTLGAEKYSSEAT 330 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~----~~~-----------i-a~~pf---TTl~p~~---g~v~~~~~~~~~~~~~~i~ 330 (421)
..||+||+.|+|||||+|+|++. +.. + .+.++ ||.+|.. -.+...+ .+....++.
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~---~~~~~~~Vr 94 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI---NEGTKFKVR 94 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec---cCCCcccEE
Confidence 47899999999999999999987 433 2 56677 8888866 2222221 112235799
Q ss_pred EecCCcccccccccCchhHH----------------------HHHhcc-cCCEEEEEe-eCCC-----CCChhhHHHHHH
Q 014655 331 LADLPGLIEGAHLGKGLGRN----------------------FLRHLR-RTRLLVHVI-DAAA-----ENPVNDYRTVKE 381 (421)
Q Consensus 331 iiDtPGlie~a~~~~gl~~~----------------------fL~~i~-radvIl~Vv-D~s~-----~~~~~~~~~l~~ 381 (421)
++||+|+......+.-.... ..+.++ ++|+.|+|. |.+- .+..+..+.+.+
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999998643322211112 345566 899999999 8751 123334456777
Q ss_pred HHHhcCCCCCCCCEEEEEeCCCC
Q 014655 382 ELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 382 eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
+|+. .++|+++|+||+|-
T Consensus 175 eLk~-----~~kPfiivlN~~dp 192 (492)
T TIGR02836 175 ELKE-----LNKPFIILLNSTHP 192 (492)
T ss_pred HHHh-----cCCCEEEEEECcCC
Confidence 8876 57999999999993
No 229
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.14 E-value=2.3e-10 Score=122.22 Aligned_cols=119 Identities=20% Similarity=0.205 Sum_probs=76.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCc------c-C--CCCeeee-------------ccceeecCCCCCCcccc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI------A-D--YPFTTLM-------------PNLGRLDGDPTLGAEKY 325 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i------a-~--~pfTTl~-------------p~~g~v~~~~~~~~~~~ 325 (421)
|...+.+|+++|++++|||||+++|.-..-.+ . . ...|+.+ .....+.+ .
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~--------~ 78 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY--------R 78 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee--------C
Confidence 45667899999999999999999985321111 1 0 0011111 11111221 1
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
+..+.++||||+.+. .....+.+..+|++|+|+|++... ....+.+++.++. .+.|+++|+||+|+.
T Consensus 79 ~~~inliDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 79 DCLVNLLDTPGHEDF-------SEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred CeEEEEEECCChhhH-------HHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 357899999998543 233456778899999999998753 2333445555544 458999999999987
Q ss_pred CC
Q 014655 406 EM 407 (421)
Q Consensus 406 ~~ 407 (421)
..
T Consensus 146 ~~ 147 (527)
T TIGR00503 146 IR 147 (527)
T ss_pred CC
Confidence 53
No 230
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.14 E-value=1.3e-10 Score=126.79 Aligned_cols=117 Identities=20% Similarity=0.152 Sum_probs=74.2
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCcc-----------CCCCeee----------------------eccceeecC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-----------DYPFTTL----------------------MPNLGRLDG 316 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-----------~~pfTTl----------------------~p~~g~v~~ 316 (421)
+...+|+++|.+|+|||||+++|+.....+. ...++|. +.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 3345799999999999999999987554332 1233332 222222221
Q ss_pred CCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655 317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 396 (421)
Q Consensus 317 ~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I 396 (421)
-..+++|+||||+.+. .......+..+|++++|||+......++.+ ....+..+. .++++
T Consensus 102 --------~~~~~~liDtPG~~~f-------~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~~----~~~ii 161 (632)
T PRK05506 102 --------PKRKFIVADTPGHEQY-------TRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLLG----IRHVV 161 (632)
T ss_pred --------CCceEEEEECCChHHH-------HHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHhC----CCeEE
Confidence 1347899999997532 223344578899999999997654333322 223343321 25788
Q ss_pred EEEeCCCCCC
Q 014655 397 VVLNKIDLPE 406 (421)
Q Consensus 397 IVlNK~Dl~~ 406 (421)
+|+||+|+..
T Consensus 162 vvvNK~D~~~ 171 (632)
T PRK05506 162 LAVNKMDLVD 171 (632)
T ss_pred EEEEeccccc
Confidence 9999999975
No 231
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.13 E-value=4.2e-10 Score=105.23 Aligned_cols=120 Identities=26% Similarity=0.195 Sum_probs=81.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCe--eeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFT--TLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfT--Tl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.+|+++|.+|||||||+++|........ ++.| +..+........ ...++.+|||+|+.+. ...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~-------~~~~~~~~Dt~gq~~~-------~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEG-YPPTIGNLDPAKTIEPYR-------RNIKLQLWDTAGQEEY-------RSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCccc-CCCceeeeeEEEEEEeCC-------CEEEEEeecCCCHHHH-------HHH
Confidence 6899999999999999999998764431 2222 122222222111 0235899999998764 222
Q ss_pred HHHhcccCCEEEEEeeCCC-CCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~-~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
+-.+...++++++|+|... ....+..+.+..++....+ ...|+++|.||+|+.....
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchh
Confidence 3345678999999999987 4444555666667666543 3589999999999987754
No 232
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.12 E-value=3.6e-10 Score=111.51 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=73.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccC---------CCCee-eeccceeecCCCCCCccccccceEEecCCccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD---------YPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 342 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~ 342 (421)
.+|++||.+|+|||||+|+|.+....... +..|+ +......+... ....+++|+||||+-+...
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~------g~~~~l~iiDTpGfgd~~~ 78 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEEN------GVKLKLTVIDTPGFGDNIN 78 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEEC------CEEEEEEEEecCCcccccc
Confidence 57999999999999999999987644321 22232 22222222221 1124699999999865422
Q ss_pred ccC---ch----hHHHHH------------hc--ccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 014655 343 LGK---GL----GRNFLR------------HL--RRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLN 400 (421)
Q Consensus 343 ~~~---gl----~~~fL~------------~i--~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlN 400 (421)
... .+ ...|.. .+ .++|+++|++|.+.... ..+++ +.++|.. ..|+++|+|
T Consensus 79 ~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~~------~v~vi~Vin 151 (276)
T cd01850 79 NSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLSK------RVNIIPVIA 151 (276)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHhc------cCCEEEEEE
Confidence 100 00 111111 11 25789999999875332 22333 3444432 489999999
Q ss_pred CCCCCCCC
Q 014655 401 KIDLPEMY 408 (421)
Q Consensus 401 K~Dl~~~~ 408 (421)
|+|+....
T Consensus 152 K~D~l~~~ 159 (276)
T cd01850 152 KADTLTPE 159 (276)
T ss_pred CCCcCCHH
Confidence 99997643
No 233
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.12 E-value=5.4e-10 Score=108.18 Aligned_cols=77 Identities=22% Similarity=0.221 Sum_probs=50.7
Q ss_pred cceEEecCCccccccccc------CchhHHHHHhcc-cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 014655 327 SEATLADLPGLIEGAHLG------KGLGRNFLRHLR-RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 399 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~------~gl~~~fL~~i~-radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVl 399 (421)
..++++||||+...+..+ ..+......+++ ..+++++|+|+.......+...+.+++.. ..+++++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-----~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-----QGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-----cCCcEEEEE
Confidence 359999999997543211 122333556676 45699999998764333343344455544 468999999
Q ss_pred eCCCCCCCC
Q 014655 400 NKIDLPEMY 408 (421)
Q Consensus 400 NK~Dl~~~~ 408 (421)
||+|..+..
T Consensus 200 TK~D~~~~~ 208 (240)
T smart00053 200 TKLDLMDEG 208 (240)
T ss_pred ECCCCCCcc
Confidence 999987643
No 234
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.10 E-value=6.3e-10 Score=120.33 Aligned_cols=120 Identities=20% Similarity=0.150 Sum_probs=70.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCC--CCc---cc--c---ccceEEecCCccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT--LGA---EK--Y---SSEATLADLPGLIEGAH 342 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~--~~~---~~--~---~~~i~iiDtPGlie~a~ 342 (421)
+-|+++|++|+|||||+++|++...........|.+.....+..... ... .. . -..++++||||+.+..
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~- 85 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT- 85 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH-
Confidence 57999999999999999999876432211111221111000100000 000 00 0 0137999999986531
Q ss_pred ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
....+.+..+|++++|+|+++....+.++.+ ..+.. .+.|+++|+||+|+.
T Consensus 86 ------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 86 ------NLRKRGGALADIAILVVDINEGFQPQTIEAI-NILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred ------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECcCCc
Confidence 1122445779999999999875434444433 33333 468999999999986
No 235
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.10 E-value=4.6e-10 Score=121.98 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=76.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
-|+++|.+++|||||+++|++.+... ....+.|.+.....+.... +..+.++||||+.+ +...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-------g~~i~~IDtPGhe~-------fi~~ 67 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-------GRVLGFIDVPGHEK-------FLSN 67 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-------CcEEEEEECCCHHH-------HHHH
Confidence 37899999999999999999754321 2234566655444332211 23589999999743 2334
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~ 407 (421)
.+..+..+|++++|||+......++.+. ...+.. .+.| ++||+||+|+.+.
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~eh-l~il~~-----lgi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREH-LAILQL-----TGNPMLTVALTKADRVDE 119 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHH-HHHHHH-----cCCCeEEEEEECCccCCH
Confidence 4566788999999999987544444333 344544 2455 5799999999754
No 236
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2e-10 Score=107.61 Aligned_cols=119 Identities=22% Similarity=0.202 Sum_probs=87.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCccCC-----CCeeeeccceeecCCCCCCccccccceEEecCCccccccc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADY-----PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 342 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~-----pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~ 342 (421)
++.-+++|.++|.+++|||-||.+++..+..+... .|.|... .++.. ....+||||.|.....
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~---~vd~k--------~vkaqIWDTAGQERyr- 77 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTV---NVDGK--------TVKAQIWDTAGQERYR- 77 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeece---eecCc--------EEEEeeecccchhhhc-
Confidence 45667889999999999999999999887554322 2222221 12211 2368999999975431
Q ss_pred ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.+ .-.+.+.|-..++|+|++...+++....|+.||+.... .+.++++|.||+||..
T Consensus 78 ---Ai---tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 78 ---AI---TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNH 133 (222)
T ss_pred ---cc---cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhh
Confidence 11 12345778899999999998888998999999988654 5789999999999976
No 237
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.3e-10 Score=106.84 Aligned_cols=122 Identities=27% Similarity=0.426 Sum_probs=84.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce----eecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG----RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g----~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
.+|.++|+-||||||++..|.-.+. +|| .|.+| .+++. +.++++||+-|... ++
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~------vtt-vPTiGfnVE~v~yk--------n~~f~vWDvGGq~k-------~R 75 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEI------VTT-VPTIGFNVETVEYK--------NISFTVWDVGGQEK-------LR 75 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCc------ccC-CCccccceeEEEEc--------ceEEEEEecCCCcc-------cc
Confidence 5899999999999999999976653 233 34333 34433 34799999999743 33
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
..|..+...++.+|||||.++.+..+ ...++|...- +.+...|+++.+||.|++.+-...+.-+.+++
T Consensus 76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~---eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l 145 (181)
T KOG0070|consen 76 PLWKHYFQNTQGLIFVVDSSDRERIE---EAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGL 145 (181)
T ss_pred cchhhhccCCcEEEEEEeCCcHHHHH---HHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhh
Confidence 44556678999999999999754433 2334443321 23457999999999999988765555455544
No 238
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.09 E-value=4.9e-10 Score=121.49 Aligned_cols=122 Identities=23% Similarity=0.256 Sum_probs=77.9
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccC---------------CCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt 334 (421)
+.+.+|+++|..++|||||+.+|....-.+.. .-+.|.......+.+... ......+.+|||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~---dg~~~~lnLiDT 81 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAK---DGETYILNLIDT 81 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEcc---CCCcEEEEEEEC
Confidence 34568999999999999999999764322211 012222222222211100 011347899999
Q ss_pred CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
||+.+. .....+.++.||++|+|||+++....++...+..... .+.|+++|+||+|+..+
T Consensus 82 PGh~dF-------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 82 PGHVDF-------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAA 141 (600)
T ss_pred CCcHHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCcc
Confidence 999764 2234566788999999999998655555544443332 35799999999999754
No 239
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.09 E-value=6.5e-10 Score=106.44 Aligned_cols=69 Identities=25% Similarity=0.146 Sum_probs=48.6
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcc--cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~--radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..++++||||+.+. ....++.+. .+|++++|+|+..+....+ ..+..++.. .++|+++|+||+|+
T Consensus 84 ~~i~liDtpG~~~~-------~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~-----~~ip~ivvvNK~D~ 150 (224)
T cd04165 84 KLVTFIDLAGHERY-------LKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA-----LNIPVFVVVTKIDL 150 (224)
T ss_pred cEEEEEECCCcHHH-------HHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCEEEEEECccc
Confidence 46899999997543 223344443 6899999999987654444 334455554 46899999999998
Q ss_pred CCCC
Q 014655 405 PEMY 408 (421)
Q Consensus 405 ~~~~ 408 (421)
....
T Consensus 151 ~~~~ 154 (224)
T cd04165 151 APAN 154 (224)
T ss_pred cCHH
Confidence 7654
No 240
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.08 E-value=1.7e-10 Score=106.12 Aligned_cols=120 Identities=23% Similarity=0.269 Sum_probs=86.9
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-----cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-----a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~ 344 (421)
+.+.+|.++|.+++|||||+|.+.+.+-.. -...|-|.+.. ++ + -...++||||.|.....+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~---Vd-~-------~~vtlQiWDTAGQERFqs-- 73 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQ---VD-D-------RSVTLQIWDTAGQERFQS-- 73 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEE---Ec-C-------eEEEEEEEecccHHHhhh--
Confidence 455789999999999999999998765211 11224444322 22 1 124689999999876533
Q ss_pred CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-C-CCCCCEEEEEeCCCCCCC
Q 014655 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-D-YLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-~-l~~kP~IIVlNK~Dl~~~ 407 (421)
|+..| .+.||.+++|+|+..+.+++.++.|++|+-.+.. . ...-|+||+.||+|+.+.
T Consensus 74 --Lg~aF---YRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 74 --LGVAF---YRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred --cccce---ecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 33334 6789999999999999999999999998766542 2 235789999999999774
No 241
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.08 E-value=4.4e-10 Score=116.46 Aligned_cols=124 Identities=20% Similarity=0.179 Sum_probs=73.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeec--------------CCCCCCcc----ccccceEE
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLD--------------GDPTLGAE----KYSSEATL 331 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~--------------~~~~~~~~----~~~~~i~i 331 (421)
.+|+++|.+++|||||+++|++..... .-....|......... ........ .....+++
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 479999999999999999998643211 0011222221111100 00000000 01246999
Q ss_pred ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+||||+.+. ...+...+..+|++++|||++++. ..+..+ ....+..+. .+|+++|+||+|+.+.+
T Consensus 85 iDtPGh~~f-------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~~g----i~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 85 VDAPGHETL-------MATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEIIG----IKNIVIVQNKIDLVSKE 150 (406)
T ss_pred EECCCHHHH-------HHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHHcC----CCeEEEEEEccccCCHH
Confidence 999997543 345566677899999999998754 223333 223444321 25789999999998643
No 242
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.08 E-value=5.4e-10 Score=118.06 Aligned_cols=118 Identities=22% Similarity=0.242 Sum_probs=73.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccC-----------CCCe----------------------eeeccceeecC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-----------YPFT----------------------TLMPNLGRLDG 316 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~-----------~pfT----------------------Tl~p~~g~v~~ 316 (421)
+...+|+++|.+++|||||+++|....-.+.. ..++ |++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 55579999999999999999999755322211 0122 22322222221
Q ss_pred CCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655 317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 396 (421)
Q Consensus 317 ~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I 396 (421)
. ..++.|+||||+.+ +.......+..+|++++|||+.......+.+ .+..+..+. .+|+|
T Consensus 105 ~--------~~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~-~~~l~~~lg----~~~iI 164 (474)
T PRK05124 105 E--------KRKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARKGVLDQTRR-HSFIATLLG----IKHLV 164 (474)
T ss_pred C--------CcEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCCCccccchH-HHHHHHHhC----CCceE
Confidence 1 24799999999643 2333445568899999999998654332222 222333322 25789
Q ss_pred EEEeCCCCCCC
Q 014655 397 VVLNKIDLPEM 407 (421)
Q Consensus 397 IVlNK~Dl~~~ 407 (421)
+|+||+|+...
T Consensus 165 vvvNKiD~~~~ 175 (474)
T PRK05124 165 VAVNKMDLVDY 175 (474)
T ss_pred EEEEeeccccc
Confidence 99999999753
No 243
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.06 E-value=9.4e-10 Score=98.35 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=75.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|.|||..+||||||+++|.+.+... .- |.. +.+ . =.++||||-. -++..+.++.+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~---~K-Tq~-----i~~---------~--~~~IDTPGEy---iE~~~~y~aLi 58 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY---KK-TQA-----IEY---------Y--DNTIDTPGEY---IENPRFYHALI 58 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc---Cc-cce-----eEe---------c--ccEEECChhh---eeCHHHHHHHH
Confidence 478999999999999999999865321 11 111 111 1 1459999942 12455555666
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch----HHHHhCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS----SSRQGIGFNP 421 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~----~~l~~lGl~e 421 (421)
.....||+|++|.|++.+...-.-. .. ....+|+|-|+||+|+...++.. +.|+..|+++
T Consensus 59 ~ta~dad~V~ll~dat~~~~~~pP~----fa-----~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~ 122 (143)
T PF10662_consen 59 VTAQDADVVLLLQDATEPRSVFPPG----FA-----SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKE 122 (143)
T ss_pred HHHhhCCEEEEEecCCCCCccCCch----hh-----cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCC
Confidence 6678999999999998753211111 11 12468999999999999433332 4566666653
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.05 E-value=7.8e-10 Score=114.69 Aligned_cols=114 Identities=23% Similarity=0.235 Sum_probs=71.7
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccC-------------------C--------------CCeeeeccceeecCCCCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD-------------------Y--------------PFTTLMPNLGRLDGDPTL 320 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~-------------------~--------------pfTTl~p~~g~v~~~~~~ 320 (421)
+|+++|++++|||||+.+|....-.+.. + -+.|++.....+...
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~--- 78 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD--- 78 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC---
Confidence 6899999999999999999644322110 1 111233332222221
Q ss_pred CccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 014655 321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 400 (421)
Q Consensus 321 ~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlN 400 (421)
..++.++||||+.+. .......+..+|++++|||+......++.+ .+..+..+. .+++++|+|
T Consensus 79 -----~~~~~liDtPGh~~f-------~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~~~~~~~~----~~~iivviN 141 (406)
T TIGR02034 79 -----KRKFIVADTPGHEQY-------TRNMATGASTADLAVLLVDARKGVLEQTRR-HSYIASLLG----IRHVVLAVN 141 (406)
T ss_pred -----CeEEEEEeCCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCccccHH-HHHHHHHcC----CCcEEEEEE
Confidence 347999999997542 223345678899999999998754333333 333444322 246888999
Q ss_pred CCCCCCC
Q 014655 401 KIDLPEM 407 (421)
Q Consensus 401 K~Dl~~~ 407 (421)
|+|+...
T Consensus 142 K~D~~~~ 148 (406)
T TIGR02034 142 KMDLVDY 148 (406)
T ss_pred ecccccc
Confidence 9999753
No 245
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.8e-10 Score=113.31 Aligned_cols=138 Identities=22% Similarity=0.287 Sum_probs=95.3
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCC---CccCCCCeee------eccceeecCCCCCCc-----c------------
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKP---DIADYPFTTL------MPNLGRLDGDPTLGA-----E------------ 323 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~---~ia~~pfTTl------~p~~g~v~~~~~~~~-----~------------ 323 (421)
..-+=|.++|..+.||||+|+.|+..+. .+.+.|.|.. -+..+++.+.....+ .
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 3345689999999999999999998762 3455554432 222333333211110 0
Q ss_pred --------ccccceEEecCCcccccccccCchhHHHHH----hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCC
Q 014655 324 --------KYSSEATLADLPGLIEGAHLGKGLGRNFLR----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYL 391 (421)
Q Consensus 324 --------~~~~~i~iiDtPGlie~a~~~~gl~~~fL~----~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~ 391 (421)
..-.+++|+||||+.++..+....+..|-. .+++||.|++++|+..-+...+++.+...|+- .
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-----~ 210 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-----H 210 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-----C
Confidence 011359999999999998776555555533 25899999999999877766677777777765 3
Q ss_pred CCCEEEEEeCCCCCCCCCchH
Q 014655 392 ERPFIVVLNKIDLPEMYDDSS 412 (421)
Q Consensus 392 ~kP~IIVlNK~Dl~~~~e~~~ 412 (421)
+-.+-||+||+|.++.++.+.
T Consensus 211 EdkiRVVLNKADqVdtqqLmR 231 (532)
T KOG1954|consen 211 EDKIRVVLNKADQVDTQQLMR 231 (532)
T ss_pred cceeEEEeccccccCHHHHHH
Confidence 456889999999999887653
No 246
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=4.2e-10 Score=104.14 Aligned_cols=115 Identities=22% Similarity=0.151 Sum_probs=79.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc--cC---CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI--AD---YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~---~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
.+|.|+|..+||||||+-++...+... .+ -.|-|... ..+. ...++.||||.|..... ++
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv-----~~~~------~~ikfeIWDTAGQERy~----sl 70 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTV-----TVDD------NTIKFEIWDTAGQERYH----SL 70 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEE-----EeCC------cEEEEEEEEcCCccccc----cc
Confidence 589999999999999999987654211 11 12222211 1111 02468899999987642 23
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
... +.+.|++.|+|+|+++.+++...+.|..+|+.-.+ .+.-+.+|.||+||...
T Consensus 71 apM---YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 71 APM---YYRGANAAIVVYDITDEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLER 125 (200)
T ss_pred ccc---eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhc
Confidence 322 35789999999999999888888888888887433 23445669999999873
No 247
>PRK13351 elongation factor G; Reviewed
Probab=99.05 E-value=9.1e-10 Score=121.22 Aligned_cols=116 Identities=24% Similarity=0.226 Sum_probs=76.6
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCc---cCC---------------CCeeeeccceeecCCCCCCccccccceEEe
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI---ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLA 332 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~i~ii 332 (421)
.+.+|+++|..++|||||+++|......+ ... -..|+......+.. ....+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~--------~~~~i~li 78 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW--------DNHRINLI 78 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE--------CCEEEEEE
Confidence 45689999999999999999997532111 000 01122222222221 13579999
Q ss_pred cCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 333 DtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
||||+.+. .......++.+|++++|+|++........ .++..+.. .+.|+++|+||+|+...
T Consensus 79 DtPG~~df-------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~-----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 79 DTPGHIDF-------TGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR-----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred ECCCcHHH-------HHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh-----cCCCEEEEEECCCCCCC
Confidence 99998653 22334567889999999999876554443 34445544 36899999999999865
No 248
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.04 E-value=6e-10 Score=105.48 Aligned_cols=126 Identities=19% Similarity=0.141 Sum_probs=77.4
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccC--CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~--~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
+|.|+|.+++||||++|.|++.+..... ....|........... +..++|+||||+.+....+..+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~--------g~~v~VIDTPGl~d~~~~~~~~~~~i 73 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD--------GRQVTVIDTPGLFDSDGSDEEIIREI 73 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET--------TEEEEEEE--SSEETTEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeec--------ceEEEEEeCCCCCCCcccHHHHHHHH
Confidence 6899999999999999999998764322 2223333333222221 35799999999977644333333333
Q ss_pred HH----hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 352 LR----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 352 L~----~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+ .....+++|||+++. ..+.++...+....+.+.+.. -+.++||+|..|......
T Consensus 74 ~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 74 KRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTT
T ss_pred HHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH-HhHhhHHhhhcccccccc
Confidence 33 234579999999988 455566555555555565433 356899999999877654
No 249
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.04 E-value=1e-09 Score=105.02 Aligned_cols=107 Identities=22% Similarity=0.275 Sum_probs=70.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC--ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~--ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.-|+++|.+|+|||||+++|...... +....++. -.+.. ...++.++||||.+ ..
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-----~i~~~--------~~~~i~~vDtPg~~----------~~ 96 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-----TVVTG--------KKRRLTFIECPNDI----------NA 96 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-----EEEec--------CCceEEEEeCCchH----------HH
Confidence 45899999999999999999875211 12111110 01111 13578999999854 23
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCE-EEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~-IIVlNK~Dl~~~~ 408 (421)
.++.++.+|++++|+|++......+ ..++..+.. .+.|. ++|+||+|+....
T Consensus 97 ~l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~-----~g~p~vi~VvnK~D~~~~~ 149 (225)
T cd01882 97 MIDIAKVADLVLLLIDASFGFEMET-FEFLNILQV-----HGFPRVMGVLTHLDLFKKN 149 (225)
T ss_pred HHHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH-----cCCCeEEEEEeccccCCcH
Confidence 4566788999999999986554444 345556654 24675 4599999997543
No 250
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.04 E-value=5e-10 Score=101.03 Aligned_cols=119 Identities=22% Similarity=0.194 Sum_probs=84.7
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeee--ccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLM--PNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~--p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
...+|.++|..++||||||-+++..... +..-+|+- -..-.+..+. ...++.||||+|..... .|.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg------~~~KlaiWDTAGqErFR----tLT 77 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDG------KRLKLAIWDTAGQERFR----TLT 77 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcC------ceEEEEEEeccchHhhh----ccC
Confidence 3468999999999999999999875422 22233331 1122222221 13479999999976542 222
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
. .+.+.|..+|+|+|++..+++..++.|.+||..|..+ .+.-.++|.||+|..
T Consensus 78 p---SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDke 130 (209)
T KOG0080|consen 78 P---SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKE 130 (209)
T ss_pred H---hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccch
Confidence 2 3467889999999999999999999999999999753 244568899999975
No 251
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.4e-10 Score=102.54 Aligned_cols=119 Identities=25% Similarity=0.353 Sum_probs=86.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+...++.++|.-|||||||++.|.+.+..+ -..|++|....+.... -+++..|.-|+... .+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q---hvPTlHPTSE~l~Ig~--------m~ftt~DLGGH~qA-------rr 79 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ---HVPTLHPTSEELSIGG--------MTFTTFDLGGHLQA-------RR 79 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc---cCCCcCCChHHheecC--------ceEEEEccccHHHH-------HH
Confidence 445689999999999999999998876543 2336677665555442 37899999998653 55
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHh--cCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRM--YNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~--~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+.+++..+|.++|+||+.+.+...+.+ .+++. ..+.+...|++|..||+|.+.+..
T Consensus 80 ~wkdyf~~v~~iv~lvda~d~er~~es~---~eld~ll~~e~la~vp~lilgnKId~p~a~s 138 (193)
T KOG0077|consen 80 VWKDYFPQVDAIVYLVDAYDQERFAESK---KELDALLSDESLATVPFLILGNKIDIPYAAS 138 (193)
T ss_pred HHHHHHhhhceeEeeeehhhHHHhHHHH---HHHHHHHhHHHHhcCcceeecccccCCCccc
Confidence 6778899999999999998754332222 22221 123346799999999999988763
No 252
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.01 E-value=6.7e-10 Score=98.33 Aligned_cols=124 Identities=24% Similarity=0.315 Sum_probs=84.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-cC-CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-AD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~-~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.+|+++|.-||||||||..|.+.++.- .+ .-|.|. .+.++. ...+.+||+-|. +++.-.
T Consensus 18 irilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k-----~v~~~g-------~f~LnvwDiGGq-------r~IRpy 78 (185)
T KOG0074|consen 18 IRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTK-----KVEYDG-------TFHLNVWDIGGQ-------RGIRPY 78 (185)
T ss_pred EEEEEEecCCCcchhHHHHHccCChhhccccCCcceE-----EEeecC-------cEEEEEEecCCc-------cccchh
Confidence 579999999999999999999988653 22 223332 233332 136899999994 566677
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEMYDDSSSRQGIG 418 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG 418 (421)
|..+.+..|.++||||.++...+++. -+++..+. ..+...|++|..||.|+..+....+....++
T Consensus 79 WsNYyenvd~lIyVIDS~D~krfeE~---~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~kln 145 (185)
T KOG0074|consen 79 WSNYYENVDGLIYVIDSTDEKRFEEI---SEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLN 145 (185)
T ss_pred hhhhhhccceEEEEEeCCchHhHHHH---HHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcc
Confidence 88889999999999997764433332 22222211 2346799999999999987655444444443
No 253
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.3e-09 Score=101.13 Aligned_cols=122 Identities=19% Similarity=0.139 Sum_probs=84.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|.++|.-++||||||+++.-.... .+|.-|- ++-..-.+.+.. ...++++|||+|.... ....
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd-~~YqATIGiDFlskt~~l~d------~~vrLQlWDTAGQERF-------rsli 88 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFD-NTYQATIGIDFLSKTMYLED------RTVRLQLWDTAGQERF-------RSLI 88 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhc-ccccceeeeEEEEEEEEEcC------cEEEEEEEecccHHHH-------hhhh
Confidence 68999999999999999998754321 1222111 111111222221 1357999999997543 1122
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
-.+++.+.++|.|+|+++..++++...|.+.+...+.. .+.-+++|.||.||.+..+
T Consensus 89 psY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs-~~viI~LVGnKtDL~dkrq 145 (221)
T KOG0094|consen 89 PSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGS-DDVIIFLVGNKTDLSDKRQ 145 (221)
T ss_pred hhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCC-CceEEEEEcccccccchhh
Confidence 35688999999999999999999988888888776532 1355788999999998654
No 254
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.1e-09 Score=101.00 Aligned_cols=122 Identities=18% Similarity=0.116 Sum_probs=84.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..++.++|..++|||.||.+++.... +..+. .|+-...|.-. +..+....++.||||.|..... .+.+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF-~~~hd-~TiGvefg~r~----~~id~k~IKlqiwDtaGqe~fr----sv~~-- 73 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRF-QPVHD-LTIGVEFGARM----VTIDGKQIKLQIWDTAGQESFR----SVTR-- 73 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCc-ccccc-ceeeeeeceeE----EEEcCceEEEEEEecCCcHHHH----HHHH--
Confidence 36889999999999999999997652 21222 33322222111 1111223479999999976542 2223
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+.+.|-..|+|+|++..+++..+..|+.+++.+.. .+..++++.||+||...+
T Consensus 74 -syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 74 -SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIMLIGNKSDLEARR 127 (216)
T ss_pred -HHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEEEEcchhhhhccc
Confidence 345667788999999999998888888888887642 456788999999997654
No 255
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.00 E-value=1.7e-09 Score=96.45 Aligned_cols=122 Identities=21% Similarity=0.144 Sum_probs=86.3
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
..+++..|+|.|++|||||+-++.... ....|..|+ .+-.+.+++... ...++.||||+|.... .
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~G------~~VkLqIwDtAGqErF-------r 71 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDING------DRVKLQIWDTAGQERF-------R 71 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecCC------cEEEEEEeecccHHHH-------H
Confidence 345677889999999999999997652 234454333 244444554432 2457999999996432 1
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...-.+.+..+++++|+|+++.+++.....|+++++.-. ...|-++|.||.|+++..
T Consensus 72 titstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc---dsv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 72 TITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC---DSVPKVLVGNKNDDPERR 128 (198)
T ss_pred HHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC---ccccceecccCCCCccce
Confidence 122234577899999999999888888888888887644 357889999999998653
No 256
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.7e-09 Score=96.53 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=86.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeec--cceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMP--NLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p--~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~ 345 (421)
..+.+++|.+||..++|||.|+++++..-.. +-...|+.. -+.+++... -..++.||||.|....
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfp--pgqgatigvdfmiktvev~g------ekiklqiwdtagqerf----- 69 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFP--PGQGATIGVDFMIKTVEVNG------EKIKLQIWDTAGQERF----- 69 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCC--CCCCceeeeeEEEEEEEECC------eEEEEEEeeccchHHH-----
Confidence 3567889999999999999999999865321 122233311 111222211 1237899999997543
Q ss_pred chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
......+.+.|+++++|+|++...++.-+-.|+.|++.|.. .+.--|+|.||+|+.+..+
T Consensus 70 --rsitqsyyrsahalilvydiscqpsfdclpewlreie~yan--~kvlkilvgnk~d~~drre 129 (213)
T KOG0095|consen 70 --RSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRRE 129 (213)
T ss_pred --HHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhh
Confidence 22234556779999999999998778878888999999864 2344588999999987644
No 257
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.5e-09 Score=96.69 Aligned_cols=136 Identities=14% Similarity=0.105 Sum_probs=92.1
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
.....++.++|...+|||||+.+..+....++-+...-++-..-++.... ...+++||||.|... +.
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~------kRiklQiwDTagqEr-------yr 84 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSD------KRIKLQIWDTAGQER-------YR 84 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecc------cEEEEEEEecccchh-------hh
Confidence 44556999999999999999999987653332111001111111111110 124789999999643 23
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC-----chHHHHhCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD-----DSSSRQGIGF 419 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e-----~~~~l~~lGl 419 (421)
...-.+++.++.+++++|+++.++....+.+...++.|.. .+.|+|+|.||||+.++.- -....+++|+
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw--~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf 158 (193)
T KOG0093|consen 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW--DNAQVILVGNKCDMDSERVISHERGRQLADQLGF 158 (193)
T ss_pred HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec--cCceEEEEecccCCccceeeeHHHHHHHHHHhCh
Confidence 3334567899999999999998888888888888888854 6799999999999976542 1234456665
No 258
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.00 E-value=1.6e-09 Score=116.67 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=81.1
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCC-CCeeeeccc-eeecCCCCCCccccccceEEecCCcccccccc-
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADY-PFTTLMPNL-GRLDGDPTLGAEKYSSEATLADLPGLIEGAHL- 343 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~-pfTTl~p~~-g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~- 343 (421)
.|....+|+|||.+|+|||||+|+|++.+.. +..+ +.||..... +.+. +..+.|+||||+.+....
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id----------G~~L~VIDTPGL~dt~~dq 183 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ----------GVKIRVIDTPGLKSSASDQ 183 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC----------CceEEEEECCCCCccccch
Confidence 3555568999999999999999999998754 3443 455543221 2221 247999999999986322
Q ss_pred --cCchhHHHHHhcc--cCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 344 --GKGLGRNFLRHLR--RTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 344 --~~gl~~~fL~~i~--radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+..+.....+.+. .+|++|||+.+..... .++...+...-+.+... .-..+|||+|..|..++
T Consensus 184 ~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~-Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 184 SKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS-IWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH-hHcCEEEEEeCCccCCC
Confidence 1223333333333 4799999988753322 23433343333344433 34668999999998864
No 259
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.98 E-value=1.9e-09 Score=111.99 Aligned_cols=125 Identities=22% Similarity=0.212 Sum_probs=75.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCC--------------CCCCc----cccccceEE
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGD--------------PTLGA----EKYSSEATL 331 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~--------------~~~~~----~~~~~~i~i 331 (421)
.+|+++|..++|||||+.+|++..... ....+.|+.......... ..... ..+...+.+
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 579999999999999999997642111 112234444332211110 00000 001247899
Q ss_pred ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
+||||..+ +...++..+..+|++++|+|++.+.+ .+..+ .+..+..+. .+|+++|+||+|+.+..+
T Consensus 90 iDtPG~~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~~~----i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 90 VDAPGHET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDIIG----IKNIVIVQNKIDLVSKER 156 (411)
T ss_pred EECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHHcC----CCcEEEEEEeeccccchh
Confidence 99999643 34456677778899999999997642 23333 333444322 247899999999986543
No 260
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.7e-09 Score=101.80 Aligned_cols=119 Identities=28% Similarity=0.336 Sum_probs=83.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
..|.|+|+.++|||+|+-.|..... .-.+|...|+.+.+... +..++++|.||+.. +.+.++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~---~~TvtSiepn~a~~r~g--------s~~~~LVD~PGH~r-------lR~kl~ 100 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH---RGTVTSIEPNEATYRLG--------SENVTLVDLPGHSR-------LRRKLL 100 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc---cCeeeeeccceeeEeec--------CcceEEEeCCCcHH-------HHHHHH
Confidence 4799999999999999999976531 22356678888887654 23579999999754 455555
Q ss_pred Hhcc---cCCEEEEEeeCCCC--CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 353 RHLR---RTRLLVHVIDAAAE--NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 353 ~~i~---radvIl~VvD~s~~--~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
+.+. ++..||||||+..- +..+..+.+...|..-.......|++|++||.|+..+..
T Consensus 101 e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 101 EYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred HHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence 5554 89999999998652 223333445555544322234678999999999987653
No 261
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.96 E-value=1.8e-09 Score=104.10 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=77.1
Q ss_pred eecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
+|.|+|+.++||||+.+.+...- |....+...|.++..-.+.... .-.+.+||.||....... .+...--
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-------~~~l~iwD~pGq~~~~~~--~~~~~~~ 71 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-------FLPLNIWDCPGQDDFMEN--YFNSQRE 71 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-------SCEEEEEEE-SSCSTTHT--THTCCHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-------CcEEEEEEcCCccccccc--cccccHH
Confidence 68999999999999999998654 3334555666666655554322 137899999998754221 0001111
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHH---HHhcCCCCCCCCEEEEEeCCCCCCCCCch
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEE---LRMYNPDYLERPFIVVLNKIDLPEMYDDS 411 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~e---L~~~~~~l~~kP~IIVlNK~Dl~~~~e~~ 411 (421)
.-.+.++++|||+|+...+..+++..+.+. +..+++ +..+-|.+.|+|+..++.+.
T Consensus 72 ~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp---~~~v~vfiHK~D~l~~~~r~ 130 (232)
T PF04670_consen 72 EIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP---NIKVFVFIHKMDLLSEDERE 130 (232)
T ss_dssp HHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST---T-EEEEEEE-CCCS-HHHHH
T ss_pred HHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeecccCCHHHHH
Confidence 224789999999999866666666555544 445554 56789999999998765443
No 262
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.95 E-value=7.6e-09 Score=95.28 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=85.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCC-c------cCCCC---eeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPD-I------ADYPF---TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 341 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-i------a~~pf---TTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a 341 (421)
..+|+++|..+|||||++.+++...+- + ..+.. ||.-...|.+.++. ...+.+.||||+...
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-------~~~v~LfgtPGq~RF- 81 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-------DTGVHLFGTPGQERF- 81 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-------cceEEEecCCCcHHH-
Confidence 368999999999999999999987631 1 12333 67777777776542 247999999998643
Q ss_pred cccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 342 HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 342 ~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...+--..+.+..+++++|.+.+... ..+.+.+.+.... ..|++|++||.|+.++..
T Consensus 82 ------~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~----~ip~vVa~NK~DL~~a~p 138 (187)
T COG2229 82 ------KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN----PIPVVVAINKQDLFDALP 138 (187)
T ss_pred ------HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc----CCCEEEEeeccccCCCCC
Confidence 22222334679999999999987766 3344555665532 289999999999987753
No 263
>PTZ00416 elongation factor 2; Provisional
Probab=98.94 E-value=4.9e-09 Score=117.76 Aligned_cols=123 Identities=20% Similarity=0.144 Sum_probs=77.3
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeee---------------eccceeecCCCC--CCccccccceEE
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTL---------------MPNLGRLDGDPT--LGAEKYSSEATL 331 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl---------------~p~~g~v~~~~~--~~~~~~~~~i~i 331 (421)
..+.+|+++|+.++|||||+++|....-.+ .....+|. ......+.+... ......+..+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 445689999999999999999998643322 11112221 111111111100 000001246899
Q ss_pred ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
+||||+.+. .......+..+|++|+|+|+......++ +.++..+.. .++|+++|+||+|+.
T Consensus 97 iDtPG~~~f-------~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDF-------SSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhH-------HHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH-----cCCCEEEEEEChhhh
Confidence 999998764 2234566788999999999987654444 345555554 358999999999997
No 264
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.93 E-value=5.5e-09 Score=109.68 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=72.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCCCC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTLG 321 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~~ 321 (421)
..|+++|..++|||||+.+|+..--.+. ...+.|.+.....+...
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~---- 83 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP---- 83 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC----
Confidence 4799999999999999999875211110 01233444333333221
Q ss_pred ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC------hhhHHHHHHHHHhcCCCCCCCC-
Q 014655 322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP------VNDYRTVKEELRMYNPDYLERP- 394 (421)
Q Consensus 322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~------~~~~~~l~~eL~~~~~~l~~kP- 394 (421)
+..+.|+||||+.+. .......+..+|++++|||+..... ..+.+..+..+.. ...|
T Consensus 84 ----~~~i~lIDtPGh~~f-------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-----~gi~~ 147 (446)
T PTZ00141 84 ----KYYFTIIDAPGHRDF-------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-----LGVKQ 147 (446)
T ss_pred ----CeEEEEEECCChHHH-------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-----cCCCe
Confidence 347999999997543 3344566788999999999987532 1233334444544 3555
Q ss_pred EEEEEeCCCCC
Q 014655 395 FIVVLNKIDLP 405 (421)
Q Consensus 395 ~IIVlNK~Dl~ 405 (421)
+|+|+||||..
T Consensus 148 iiv~vNKmD~~ 158 (446)
T PTZ00141 148 MIVCINKMDDK 158 (446)
T ss_pred EEEEEEccccc
Confidence 67899999954
No 265
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.89 E-value=4.5e-09 Score=116.37 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=75.2
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc----------cCC------CCeeeeccceeecCCCCCCccccccceEEec
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI----------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i----------a~~------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD 333 (421)
..+.+|+++|..++|||||+++|....-.+ .++ ...|+.......... ..+....+.++|
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~----~~~~~~~i~liD 92 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHE----YEGNEYLINLID 92 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEe----ecCCceEEEEEe
Confidence 345799999999999999999996431111 011 122322221111000 001235799999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
|||+.+. .......+..+|++|+|+|+......++. .++..+.. .+.|.++|+||+|....
T Consensus 93 TPG~~~f-------~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~-----~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 93 TPGHVDF-------GGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK-----ENVKPVLFINKVDRLIN 153 (720)
T ss_pred CCCcccc-------HHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH-----cCCCEEEEEEChhcccc
Confidence 9998763 22345677899999999999875433333 33333333 35788999999998753
No 266
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.89 E-value=5.2e-09 Score=117.69 Aligned_cols=123 Identities=20% Similarity=0.116 Sum_probs=77.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCcc-CCCCe---------------eeeccceeecCCCCC--------Ccccc
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA-DYPFT---------------TLMPNLGRLDGDPTL--------GAEKY 325 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-~~pfT---------------Tl~p~~g~v~~~~~~--------~~~~~ 325 (421)
..+.+|+++|+.++|||||+.+|....-.+. ....+ |.......+.+.... .....
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 3466899999999999999999975443221 11111 112111111111000 00001
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
+..+.++||||+.+. .......+..+|..|+|||+..+....+.. ++..+.. .++|+++++||+|+.
T Consensus 97 ~~~inliDtPGh~dF-------~~e~~~al~~~D~ailVvda~~Gv~~~t~~-~~~~~~~-----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEGVCVQTET-VLRQALG-----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHH-------HHHHHHHHhhcCEEEEEEECCCCCcccHHH-HHHHHHH-----CCCCEEEEEECCccc
Confidence 346899999999764 223456678899999999998876555544 4444443 468999999999997
No 267
>PRK13768 GTPase; Provisional
Probab=98.87 E-value=4.2e-09 Score=102.62 Aligned_cols=80 Identities=28% Similarity=0.341 Sum_probs=56.0
Q ss_pred cceEEecCCcccccccccCchhHHHHHhccc--CCEEEEEeeCCCCCChhhHHHHHH--HHHhcCCCCCCCCEEEEEeCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDYRTVKE--ELRMYNPDYLERPFIVVLNKI 402 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~r--advIl~VvD~s~~~~~~~~~~l~~--eL~~~~~~l~~kP~IIVlNK~ 402 (421)
..+.++||||.++.... ..+...+.+++++ +++++||+|++......++..... ...... .++|+++|+||+
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~---~~~~~i~v~nK~ 172 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR---LGLPQIPVLNKA 172 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH---cCCCEEEEEEhH
Confidence 46999999999886533 5667778888877 899999999976544444332221 111111 468999999999
Q ss_pred CCCCCCCc
Q 014655 403 DLPEMYDD 410 (421)
Q Consensus 403 Dl~~~~e~ 410 (421)
|+....+.
T Consensus 173 D~~~~~~~ 180 (253)
T PRK13768 173 DLLSEEEL 180 (253)
T ss_pred hhcCchhH
Confidence 99876544
No 268
>PRK12740 elongation factor G; Reviewed
Probab=98.87 E-value=1e-08 Score=112.62 Aligned_cols=110 Identities=25% Similarity=0.202 Sum_probs=70.5
Q ss_pred cCCCCCChhHHHHHHhcCCCCc---cCC---------------CCeeeeccceeecCCCCCCccccccceEEecCCcccc
Q 014655 278 VGLPNAGKSTLLAAITHAKPDI---ADY---------------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 339 (421)
Q Consensus 278 VG~pNaGKSSLLnaLt~~~~~i---a~~---------------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie 339 (421)
||.+|+|||||+++|....-.+ .++ ...|.......+.. .+..+.++||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--------~~~~i~liDtPG~~~ 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--------KGHKINLIDTPGHVD 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--------CCEEEEEEECCCcHH
Confidence 6999999999999995443221 111 11122211122221 135799999999865
Q ss_pred cccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 340 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 340 ~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
. .......+..+|++++|+|++........ .++..+.. .+.|+++|+||+|+....
T Consensus 73 ~-------~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~-----~~~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 73 F-------TGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK-----YGVPRIIFVNKMDRAGAD 128 (668)
T ss_pred H-------HHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH-----cCCCEEEEEECCCCCCCC
Confidence 2 22345667889999999999876544443 34444444 368999999999987643
No 269
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.85 E-value=8e-09 Score=97.12 Aligned_cols=120 Identities=20% Similarity=0.165 Sum_probs=82.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+++|||+|...+..... +.+|..|.-+...-.+..+. -...+.|+||+|..+... +. -
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~~------~~~~l~ilDt~g~~~~~~----~~---~ 69 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVDG------EVCMLEILDTAGQEEFSA----MR---D 69 (196)
T ss_pred eEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEECC------EEEEEEEEcCCCcccChH----HH---H
Confidence 4799999999999999999876542 23344333322222222221 123678999999554321 11 2
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++..+|..++|+++++..+++....+++.+.. .......|+++|.||+|+...
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r-~~~~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILR-VKGRDDVPIILVGNKCDLERE 123 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHH-hhCcCCCCEEEEEEcccchhc
Confidence 347788999999999999999998888888832 223345899999999999874
No 270
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.80 E-value=1.9e-08 Score=105.91 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=72.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceee---------------cCCCCCC----------ccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRL---------------DGDPTLG----------AEK 324 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v---------------~~~~~~~----------~~~ 324 (421)
..|+++|....|||||+.+|++....- .-.-+-|++.-.... ....... ...
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT 114 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence 579999999999999999999754321 001111211100000 0000000 000
Q ss_pred cccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 325 ~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
....+.++|+||+.+ +....+..+..+|++++|||+..+.+..+....+..++.+. -+++|+|+||+|+
T Consensus 115 ~~~~i~~IDtPGH~~-------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg----i~~iIVvlNKiDl 183 (460)
T PTZ00327 115 LKRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK----LKHIIILQNKIDL 183 (460)
T ss_pred ccceEeeeeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC----CCcEEEEEecccc
Confidence 124689999999743 33444566778999999999986422222222233344322 2568999999999
Q ss_pred CCCC
Q 014655 405 PEMY 408 (421)
Q Consensus 405 ~~~~ 408 (421)
.+.+
T Consensus 184 v~~~ 187 (460)
T PTZ00327 184 VKEA 187 (460)
T ss_pred cCHH
Confidence 8643
No 271
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.80 E-value=1.7e-08 Score=112.11 Aligned_cols=121 Identities=18% Similarity=0.171 Sum_probs=75.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccC-CCC---------------eeeeccceeecCCCCCCccccccceEEec
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPF---------------TTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~-~pf---------------TTl~p~~g~v~~~~~~~~~~~~~~i~iiD 333 (421)
..+..|+++|+.++|||||+.+|....-.+.. ... .|+......+.+.. ..-+..+.++|
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~----~~~~~~i~liD 93 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEY----EGKEYLINLID 93 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEe----cCCcEEEEEEc
Confidence 45678999999999999999999754322211 011 11221111111100 00134689999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
|||+.+. .....+.+..+|++|+|+|+......++.. ++..+.. .+.|.|+++||+|+...
T Consensus 94 tPG~~df-------~~~~~~~l~~~D~avlVvda~~g~~~~t~~-~~~~~~~-----~~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 94 TPGHVDF-------GGDVTRAMRAVDGAIVVVDAVEGVMPQTET-VLRQALR-----ERVKPVLFINKVDRLIK 154 (731)
T ss_pred CCCccCh-------HHHHHHHHHhcCEEEEEEECCCCCCccHHH-HHHHHHH-----cCCCeEEEEECchhhcc
Confidence 9998763 233456678899999999998764444433 4444333 24678999999998743
No 272
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3e-08 Score=87.83 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=84.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|..+|...|||||+|..|.-..+.. ...|.--++..+.+. +..+.++|.-|... +..-|.
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVtyk--------N~kfNvwdvGGqd~-------iRplWr 79 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYK--------NVKFNVWDVGGQDK-------IRPLWR 79 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEee--------eeEEeeeeccCchh-------hhHHHH
Confidence 478899999999999999998765321 111222223334332 34789999999643 344454
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY--NPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~--~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
.+...+..+|||+|+++.+. ++..++||... ++++.+.+++|.+||.|++++....+.-.-+++
T Consensus 80 hYy~gtqglIFV~Dsa~~dr---~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL 145 (180)
T KOG0071|consen 80 HYYTGTQGLIFVVDSADRDR---IEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL 145 (180)
T ss_pred hhccCCceEEEEEeccchhh---HHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc
Confidence 55678999999999987643 44455555542 345677899999999999987654443333433
No 273
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.78 E-value=6.2e-09 Score=95.87 Aligned_cols=55 Identities=33% Similarity=0.562 Sum_probs=45.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl 337 (421)
..+|+++|.||+|||||+|+|++.+. .++++|++|...+...+. .++.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-----------~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-----------KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-----------CCEEEEECcCC
Confidence 36899999999999999999999876 568999999876554331 36899999996
No 274
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.77 E-value=4.6e-08 Score=87.86 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=91.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
..+|.++|.-++|||++|..|.=.+-.+ .++.-|..|...+.++.+. .-...+.+.||.|+..+. ..|-+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~r-----garE~l~lyDTaGlq~~~---~eLpr- 79 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDR-----GAREQLRLYDTAGLQGGQ---QELPR- 79 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCC-----ChhheEEEeecccccCch---hhhhH-
Confidence 4579999999999999999986554333 3333333344444444332 124579999999997652 22332
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+++-+|+.++|+|..++.+++..+.|..++..... ..+.|+++..||+|+.+..+
T Consensus 80 --hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~Kd-KKEvpiVVLaN~rdr~~p~~ 135 (198)
T KOG3883|consen 80 --HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKD-KKEVPIVVLANKRDRAEPRE 135 (198)
T ss_pred --hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccc-cccccEEEEechhhcccchh
Confidence 235778999999999999889999999999988553 35789999999999976544
No 275
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=4.3e-09 Score=96.12 Aligned_cols=126 Identities=24% Similarity=0.270 Sum_probs=86.2
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc---c--CCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI---A--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a--~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~ 344 (421)
|.-..|.|+|+-|||||||+-++....... . ..-.+|..-+.|++... ...+.+||.-|..
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~--------~~~l~fwdlgGQe------ 80 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC--------NAPLSFWDLGGQE------ 80 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec--------cceeEEEEcCChH------
Confidence 444578999999999999999986533211 1 12233455566666654 3579999999964
Q ss_pred CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch
Q 014655 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS 411 (421)
Q Consensus 345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~ 411 (421)
.+..-+..+...|++++||||+++++..+......+.+.. ++.+.+.|+++.+||.|+..+.+..
T Consensus 81 -~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~~~ 145 (197)
T KOG0076|consen 81 -SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAMEAA 145 (197)
T ss_pred -HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhhHH
Confidence 3455566778899999999999986555444333333322 2334679999999999998766543
No 276
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.73 E-value=1.1e-08 Score=91.82 Aligned_cols=54 Identities=31% Similarity=0.485 Sum_probs=43.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl 337 (421)
..|+++|.||||||||+|+|.+.+. .++++|+||.......+ ...+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL-----------MKRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc-----------CCCEEEEECcCC
Confidence 4789999999999999999998765 45889999987543221 235899999996
No 277
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=8.5e-08 Score=100.75 Aligned_cols=130 Identities=22% Similarity=0.192 Sum_probs=89.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
+-|.++|+-.-||||||.+|-+...+...--+-|.+.--..+..+.. -...++|+||||+.-.... -.
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-----~~~~itFiDTPGHeAFt~m-------Ra 73 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-----KIPGITFIDTPGHEAFTAM-------RA 73 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-----CCceEEEEcCCcHHHHHHH-------Hh
Confidence 56889999999999999999887766555555565443334433210 0247999999997432100 01
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC--chHHHHhCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD--DSSSRQGIGFN 420 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e--~~~~l~~lGl~ 420 (421)
+-..-||++++|||+.+....+..+.+.. ++. .+.|++|++||+|.+++.- ...++++.||+
T Consensus 74 RGa~vtDIaILVVa~dDGv~pQTiEAI~h-ak~-----a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~ 137 (509)
T COG0532 74 RGASVTDIAILVVAADDGVMPQTIEAINH-AKA-----AGVPIVVAINKIDKPEANPDKVKQELQEYGLV 137 (509)
T ss_pred cCCccccEEEEEEEccCCcchhHHHHHHH-HHH-----CCCCEEEEEecccCCCCCHHHHHHHHHHcCCC
Confidence 22355899999999999877777766543 333 5799999999999986542 23467777765
No 278
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.73 E-value=5e-08 Score=102.54 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=69.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-----------------cC--------------CCCeeeeccceeecCCCCCC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-----------------AD--------------YPFTTLMPNLGRLDGDPTLG 321 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-----------------a~--------------~pfTTl~p~~g~v~~~~~~~ 321 (421)
..|+++|..++|||||+-+|+..--.+ .. .-+.|++.....+...
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~---- 83 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT---- 83 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC----
Confidence 579999999999999999886321111 00 1122333322222211
Q ss_pred ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCCh------hhHHHHHHHHHhcCCCCCCC-C
Q 014655 322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLER-P 394 (421)
Q Consensus 322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~k-P 394 (421)
...++++||||+.+. .......+..+|+.|+|||+...... .+.+..+..+.. .+. +
T Consensus 84 ----~~~i~liDtPGh~df-------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-----~gi~~ 147 (447)
T PLN00043 84 ----KYYCTVIDAPGHRDF-------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-----LGVKQ 147 (447)
T ss_pred ----CEEEEEEECCCHHHH-------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-----cCCCc
Confidence 347999999997653 22334556789999999999864211 233333333333 345 4
Q ss_pred EEEEEeCCCCC
Q 014655 395 FIVVLNKIDLP 405 (421)
Q Consensus 395 ~IIVlNK~Dl~ 405 (421)
+|+|+||+|+.
T Consensus 148 iIV~vNKmD~~ 158 (447)
T PLN00043 148 MICCCNKMDAT 158 (447)
T ss_pred EEEEEEcccCC
Confidence 68899999986
No 279
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=4.8e-08 Score=87.64 Aligned_cols=121 Identities=18% Similarity=0.131 Sum_probs=83.4
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCc--c---CCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI--A---DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL 343 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i--a---~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~ 343 (421)
..-+.++.++|..++|||.||..+...+-+- + ...|.....++|. -..+++||||.|....
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-----------K~vKLQIWDTAGQErF--- 71 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-----------KTVKLQIWDTAGQERF--- 71 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-----------cEEEEEEeecccHHHH---
Confidence 3456789999999999999999998654321 1 1122222222211 1347899999997543
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
......+.+.|-..++|+|+++.++++.+..|+...+.+.+ .++-+|++.||.||....+
T Consensus 72 ----RSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~ 131 (214)
T KOG0086|consen 72 ----RSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPERE 131 (214)
T ss_pred ----HHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhh
Confidence 22233456778888999999999888888777777776543 4566788899999987654
No 280
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.1e-07 Score=99.82 Aligned_cols=132 Identities=20% Similarity=0.171 Sum_probs=91.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
..+..+-|-++|+-.-||||||.+|.+...+-...-+.|.+.--..+.... +.+++|.||||+.-...
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-------G~~iTFLDTPGHaAF~a----- 216 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-------GKSITFLDTPGHAAFSA----- 216 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-------CCEEEEecCCcHHHHHH-----
Confidence 345667899999999999999999988876655555556543333343321 36899999999753211
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC--CchHHHHhCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY--DDSSSRQGIGF 419 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~--e~~~~l~~lGl 419 (421)
.-.+-..-+|++++||-+.+....+..+.+...-. .+.|+||.+||||.+++. ....+|...|+
T Consensus 217 --MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~------A~VpiVvAinKiDkp~a~pekv~~eL~~~gi 282 (683)
T KOG1145|consen 217 --MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS------ANVPIVVAINKIDKPGANPEKVKRELLSQGI 282 (683)
T ss_pred --HHhccCccccEEEEEEEccCCccHhHHHHHHHHHh------cCCCEEEEEeccCCCCCCHHHHHHHHHHcCc
Confidence 01122355899999999998887777776665433 579999999999988653 22345555554
No 281
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.65 E-value=2.3e-08 Score=92.38 Aligned_cols=54 Identities=37% Similarity=0.393 Sum_probs=44.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCC---------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK---------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~---------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl 337 (421)
..|+++|.||+|||||+|+|.+.. +.++..|+||+++....+. ..+.|+||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG-----------NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC-----------CCCEEEeCcCC
Confidence 479999999999999999998743 3557889999998766553 24799999996
No 282
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.65 E-value=8.8e-08 Score=86.87 Aligned_cols=118 Identities=21% Similarity=0.163 Sum_probs=85.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee------ecCCCCCCccccccceEEecCCcccccccccCc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR------LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~------v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g 346 (421)
.++.+||..-+|||+||..++..+.+-- .||.+|+ ++..| .+..++++|||.|....
T Consensus 9 frlivigdstvgkssll~~ft~gkfael------sdptvgvdffarlie~~p-----g~riklqlwdtagqerf------ 71 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAEL------SDPTVGVDFFARLIELRP-----GYRIKLQLWDTAGQERF------ 71 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCccccc------CCCccchHHHHHHHhcCC-----CcEEEEEEeeccchHHH------
Confidence 4667899999999999999998764321 1454443 22222 23457999999997553
Q ss_pred hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
......+.+.+-.+++|+|+++..+++..+.|..|...+-....+.-+++|..|+||....
T Consensus 72 -rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR 132 (213)
T KOG0091|consen 72 -RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR 132 (213)
T ss_pred -HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc
Confidence 2223455677788999999999999999998888887765444445578899999998643
No 283
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.64 E-value=2.3e-08 Score=100.84 Aligned_cols=57 Identities=39% Similarity=0.488 Sum_probs=48.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~ 340 (421)
.+|++||+||+|||||||+|.+... .++++|++|..-+...+. ..+.++||||++-.
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~-----------~~i~LlDtPGii~~ 190 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD-----------DGIYLLDTPGIIPP 190 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC-----------CCeEEecCCCcCCC
Confidence 6799999999999999999999886 459999999887665443 45899999999864
No 284
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.62 E-value=1.2e-07 Score=98.06 Aligned_cols=136 Identities=19% Similarity=0.202 Sum_probs=83.7
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCc------cCCCCee--eeccceeecCCCCCCccccccceEEecCCccccccc
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI------ADYPFTT--LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 342 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i------a~~pfTT--l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~ 342 (421)
.+.+|++|-+..-|||||+..|..+.-.. +.....+ +.-..|+..........+-+..|.|+||||+.+.-
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG- 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG- 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc-
Confidence 34578999999999999999998754221 1100000 11111111111111111224589999999987652
Q ss_pred ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC------chHHHHh
Q 014655 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD------DSSSRQG 416 (421)
Q Consensus 343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e------~~~~l~~ 416 (421)
-..-+-+.-.|.++++||+......+.-..+...|+. +.+-|+|+||+|.+.+.- .++.|..
T Consensus 83 ------GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~ 150 (603)
T COG1217 83 ------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVDEVFDLFVE 150 (603)
T ss_pred ------chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 2233445667999999999987666666667777774 445588999999988752 3455555
Q ss_pred CCC
Q 014655 417 IGF 419 (421)
Q Consensus 417 lGl 419 (421)
+|-
T Consensus 151 L~A 153 (603)
T COG1217 151 LGA 153 (603)
T ss_pred hCC
Confidence 553
No 285
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.60 E-value=6.5e-08 Score=98.93 Aligned_cols=86 Identities=26% Similarity=0.351 Sum_probs=57.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCC------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g 346 (421)
.+|.+||.+|||||||+|+|.+.. +.++++|+||+......+. ..+.++||||+........-
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~-----------~~~~l~DtPG~~~~~~~~~~ 223 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD-----------DGHSLYDTPGIINSHQMAHY 223 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC-----------CCCEEEECCCCCChhHhhhh
Confidence 589999999999999999999854 3458899999987654431 24689999999864211111
Q ss_pred hhHHHHHhc---ccCCEEEEEeeCCC
Q 014655 347 LGRNFLRHL---RRTRLLVHVIDAAA 369 (421)
Q Consensus 347 l~~~fL~~i---~radvIl~VvD~s~ 369 (421)
+....++.+ ++...+.|++|..+
T Consensus 224 l~~~~l~~~~~~~~i~~~~~~l~~~q 249 (360)
T TIGR03597 224 LDKKDLKYITPKKEIKPKTYQLNPNQ 249 (360)
T ss_pred cCHHHHhhcCCCCccCceEEEeCCCC
Confidence 222222222 33456667776544
No 286
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.59 E-value=5.1e-08 Score=87.44 Aligned_cols=56 Identities=32% Similarity=0.534 Sum_probs=46.3
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl 337 (421)
...+|+++|.||+|||||+|+|++... .+++.++||.+.....+. ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-----------~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-----------NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-----------CCEEEEECCCC
Confidence 346899999999999999999998774 568889999987765432 36899999996
No 287
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.58 E-value=7.3e-08 Score=95.50 Aligned_cols=60 Identities=27% Similarity=0.368 Sum_probs=49.0
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 341 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a 341 (421)
...+|+++|.||+|||||+|+|++.+. .+++.|++|.......+ +..+.++||||+....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-----------GKGLELLDTPGILWPK 180 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe-----------CCcEEEEECCCcCCCC
Confidence 346899999999999999999999876 66899999998764332 2368999999998654
No 288
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.58 E-value=2e-07 Score=90.97 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=46.4
Q ss_pred ceEEecCCcccccc--cccCchhHHHHHhcccCCEEEEEeeCCCCCChhhH-H-HHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 328 EATLADLPGLIEGA--HLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-R-TVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 328 ~i~iiDtPGlie~a--~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~-~-~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
+++++||||.||-. +..-.+.-..|... .--+++||+|.........+ . .|...-..|. .+.|+|+|+||+|
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~lass-~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D 192 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETLASS-FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD 192 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhHhhc-CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence 48999999999842 21111222222322 23589999997653322222 1 1222112232 5689999999999
Q ss_pred CCCCCCch
Q 014655 404 LPEMYDDS 411 (421)
Q Consensus 404 l~~~~e~~ 411 (421)
+.+..-..
T Consensus 193 v~d~~fa~ 200 (366)
T KOG1532|consen 193 VSDSEFAL 200 (366)
T ss_pred ccccHHHH
Confidence 99875433
No 289
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.1e-07 Score=95.23 Aligned_cols=115 Identities=23% Similarity=0.237 Sum_probs=68.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-----------------c--------------CCCCeeeeccceeecCCCCCC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-----------------A--------------DYPFTTLMPNLGRLDGDPTLG 321 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-----------------a--------------~~pfTTl~p~~g~v~~~~~~~ 321 (421)
.+++++|++++|||||+-+|.=.--.+ . .+-+.|.+.....++.+
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~---- 83 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD---- 83 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC----
Confidence 478999999999999999985221111 1 11223333322222222
Q ss_pred ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC------ChhhHHHHHHHHHhcCCCCCCCCE
Q 014655 322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERPF 395 (421)
Q Consensus 322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~kP~ 395 (421)
...++|+|+||+.+. ......-+..||+.|+|||+.... ...+.+... .|..+. .-..+
T Consensus 84 ----k~~~tIiDaPGHrdF-------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tl---Gi~~l 148 (428)
T COG5256 84 ----KYNFTIIDAPGHRDF-------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTL---GIKQL 148 (428)
T ss_pred ----CceEEEeeCCchHHH-------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhc---CCceE
Confidence 136999999996543 222333447899999999998763 112222221 222221 12558
Q ss_pred EEEEeCCCCCC
Q 014655 396 IVVLNKIDLPE 406 (421)
Q Consensus 396 IIVlNK~Dl~~ 406 (421)
||++||||+++
T Consensus 149 IVavNKMD~v~ 159 (428)
T COG5256 149 IVAVNKMDLVS 159 (428)
T ss_pred EEEEEcccccc
Confidence 99999999986
No 290
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.57 E-value=3.7e-08 Score=95.27 Aligned_cols=76 Identities=29% Similarity=0.418 Sum_probs=40.4
Q ss_pred ceEEecCCcccccccccCchhHHHHHhccc--CCEEEEEeeCCCCCChhhH-HHHHHHHH-hcCCCCCCCCEEEEEeCCC
Q 014655 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDY-RTVKEELR-MYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~r--advIl~VvD~s~~~~~~~~-~~l~~eL~-~~~~~l~~kP~IIVlNK~D 403 (421)
.+.++||||++|-... ......+.+.+.+ .-+++|++|+........+ ..++..+. .+. .+.|+|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccC
Confidence 5899999999984321 2234445566653 4478999998754333333 22222111 111 4689999999999
Q ss_pred CCCC
Q 014655 404 LPEM 407 (421)
Q Consensus 404 l~~~ 407 (421)
+...
T Consensus 168 l~~~ 171 (238)
T PF03029_consen 168 LLSK 171 (238)
T ss_dssp GS-H
T ss_pred cccc
Confidence 9873
No 291
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.7e-07 Score=101.30 Aligned_cols=120 Identities=26% Similarity=0.223 Sum_probs=80.3
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCc---cCCC---------------CeeeeccceeecCCCCCCccccccceE
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI---ADYP---------------FTTLMPNLGRLDGDPTLGAEKYSSEAT 330 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~p---------------fTTl~p~~g~v~~~~~~~~~~~~~~i~ 330 (421)
+..+.+|+++++-.+|||||.-+|.-..-.+ .+.. +.|+......+... .+..|.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~-------~~~~iN 79 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWK-------GDYRIN 79 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-------CceEEE
Confidence 4456789999999999999999986432222 1111 11111111111111 025899
Q ss_pred EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
++||||+++.. ...-+.++-+|..+.|+|+......+ .+.+|..+..| +.|.++++||||...++
T Consensus 80 lIDTPGHVDFt-------~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~~-----~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 80 LIDTPGHVDFT-------IEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADKY-----GVPRILFVNKMDRLGAD 144 (697)
T ss_pred EeCCCCccccH-------HHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhhc-----CCCeEEEEECccccccC
Confidence 99999999863 23446677889999999998865444 45566666664 58999999999998765
No 292
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.7e-07 Score=98.49 Aligned_cols=122 Identities=21% Similarity=0.199 Sum_probs=84.8
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCccC---------------CCCeeeeccceeecCCCCCCccccccceEEec
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD 333 (421)
...+.++++|-+-.-|||||..+|....-.+.+ .-+.|...+...+.+.. ....-+.+||
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~-----~~~ylLNLID 131 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD-----GQSYLLNLID 131 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-----CCceEEEeec
Confidence 456778999999999999999998764322211 22334333222222211 1124689999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
|||+.+..- ..-+.+.-||.+|+|||+++....+....++..++. +..+|.|+||+|++.++
T Consensus 132 TPGHvDFs~-------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~------~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 132 TPGHVDFSG-------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA------GLAIIPVLNKIDLPSAD 193 (650)
T ss_pred CCCcccccc-------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc------CCeEEEeeeccCCCCCC
Confidence 999988632 234556789999999999998777777777777763 56789999999998765
No 293
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.54 E-value=8.2e-08 Score=94.57 Aligned_cols=58 Identities=31% Similarity=0.420 Sum_probs=47.4
Q ss_pred hceecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~ 340 (421)
..+|++||.||+|||||+|+|++.+ ..+++.|++|..+....+ ...+.++||||+...
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-----------SDGLELLDTPGILWP 176 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-----------CCCEEEEECCCcccC
Confidence 4679999999999999999999877 456899999988764433 135899999999654
No 294
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.51 E-value=5.7e-08 Score=87.65 Aligned_cols=119 Identities=22% Similarity=0.225 Sum_probs=81.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccc--eeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL--GRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~--g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
++|.|+|.-=+|||||+=++...+..- ...+|+.... ..++.. .....+.||||.|.... ..++..
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~--kHlsTlQASF~~kk~n~e------d~ra~L~IWDTAGQErf----HALGPI 81 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNC--KHLSTLQASFQNKKVNVE------DCRADLHIWDTAGQERF----HALGPI 81 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcch--hhHHHHHHHHhhcccccc------cceeeeeeeeccchHhh----hccCce
Confidence 689999999999999998887654221 1122322111 011111 11346899999997543 112222
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+.+.++..++|+|+++.++++..+.|..||+.... ...-++||.||+||.+..
T Consensus 82 ---YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG--nei~l~IVGNKiDLEeeR 134 (218)
T KOG0088|consen 82 ---YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG--NEIELLIVGNKIDLEEER 134 (218)
T ss_pred ---EEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC--CeeEEEEecCcccHHHhh
Confidence 24678999999999999999999988888887543 356789999999997643
No 295
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.50 E-value=2.4e-07 Score=94.90 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=63.5
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCC---CccC--CCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKP---DIAD--YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~---~ia~--~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~ 344 (421)
..-.+||++|.+|+|||||||+|.+-.. ..++ ..-||..+....... -..+++||+||+-...
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~---------~pnv~lWDlPG~gt~~--- 100 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK---------FPNVTLWDLPGIGTPN--- 100 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS----------TTEEEEEE--GGGSS---
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC---------CCCCeEEeCCCCCCCC---
Confidence 3446899999999999999999976321 1122 223455444333221 1369999999985431
Q ss_pred CchhHHHHHh--cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 345 KGLGRNFLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 345 ~gl~~~fL~~--i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
--...+++. +.+.|++|+|.+- .....+.. |..+++. .++|+.+|.+|+|.
T Consensus 101 -f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~-La~~i~~-----~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 101 -FPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQ-LAKEIQR-----MGKKFYFVRTKVDS 153 (376)
T ss_dssp ---HHHHHHHTTGGG-SEEEEEESS--S--HHHHH-HHHHHHH-----TT-EEEEEE--HHH
T ss_pred -CCHHHHHHHccccccCEEEEEeCC--CCchhhHH-HHHHHHH-----cCCcEEEEEecccc
Confidence 123345554 4678987776653 23344443 5566666 46999999999995
No 296
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.50 E-value=1.4e-07 Score=88.52 Aligned_cols=130 Identities=20% Similarity=0.156 Sum_probs=87.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.++.+||...+|||+||-.++... ....|.-|-.+.....+..+. .-...+.+|||.|..+... +. - |
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~-fp~~yvPTVFdnys~~v~V~d-----g~~v~L~LwDTAGqedYDr----lR-p-l 72 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNA-FPEEYVPTVFDNYSANVTVDD-----GKPVELGLWDTAGQEDYDR----LR-P-L 72 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCc-CcccccCeEEccceEEEEecC-----CCEEEEeeeecCCCccccc----cc-c-c
Confidence 588999999999999999987652 223333332222222232210 1124689999999887621 21 1 1
Q ss_pred HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIG 418 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG 418 (421)
....+|++++++++.++.+.+.. ..|.-|++.+. .+.|+|+|.+|.||.++....+.++..+
T Consensus 73 -sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~d~~~~~~l~~~~ 135 (198)
T KOG0393|consen 73 -SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRDDPSTLEKLQRQG 135 (198)
T ss_pred -CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhhCHHHHHHHHhcc
Confidence 34779999999999988877664 55677888887 4789999999999986544444454433
No 297
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.46 E-value=1.9e-07 Score=82.47 Aligned_cols=54 Identities=39% Similarity=0.545 Sum_probs=42.9
Q ss_pred eecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCccc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI 338 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGli 338 (421)
+++++|.+|+|||||+|+|.+.+. .++..+.+|.+.....+. ..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT-----------PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC-----------CCEEEEECCCcC
Confidence 799999999999999999998774 457778887765543331 358999999985
No 298
>PRK13796 GTPase YqeH; Provisional
Probab=98.42 E-value=2e-07 Score=95.57 Aligned_cols=57 Identities=39% Similarity=0.444 Sum_probs=44.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCC------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~ 340 (421)
.+|.+||.||||||||+|+|.... ..++++|+||++.....+. ....++||||++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~-----------~~~~l~DTPGi~~~ 223 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD-----------DGSFLYDTPGIIHR 223 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcC-----------CCcEEEECCCcccc
Confidence 479999999999999999998542 2358899999987654332 23589999999753
No 299
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.40 E-value=1.3e-06 Score=92.56 Aligned_cols=119 Identities=21% Similarity=0.291 Sum_probs=77.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC--CccC-CCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP--DIAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~--~ia~-~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
.+|+|+|..++|||||+.+|...+- .|.+ .|-.|+ |.... | + .....|+||+--.+. ..
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~I-Padvt----P----e--~vpt~ivD~ss~~~~-------~~ 71 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILI-PADVT----P----E--NVPTSIVDTSSDSDD-------RL 71 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccCCcccc-CCccC----c----C--cCceEEEecccccch-------hH
Confidence 5899999999999999999998762 2221 122222 21111 1 0 124789999843221 12
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRT-VKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~-l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...+.+++||++++|++++++.+.+.+.. |+-.++.......+.|+|+|.||+|......
T Consensus 72 ~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 72 CLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred HHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 23467899999999999988666555433 3334444333447899999999999976543
No 300
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.37 E-value=3.1e-06 Score=81.04 Aligned_cols=92 Identities=20% Similarity=0.001 Sum_probs=58.2
Q ss_pred hceecccCCCCCChhHHHHHHhcC--CCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA--KPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~--~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
+.-|+++|.+++|||||+|.|.+. ...+ ...+.||............ .-...+.++||||+.+..... ...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-----~~~~~v~~lDteG~~~~~~~~-~~~ 80 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-----GKEHAVLLLDTEGTDGRERGE-FED 80 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-----CCcceEEEEecCCcCccccCc-hhh
Confidence 356899999999999999999998 4444 3345666544333322210 012479999999998653221 011
Q ss_pred HHHHHhcc--cCCEEEEEeeCCC
Q 014655 349 RNFLRHLR--RTRLLVHVIDAAA 369 (421)
Q Consensus 349 ~~fL~~i~--radvIl~VvD~s~ 369 (421)
...+-.+. -++++||.++...
T Consensus 81 ~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 81 DARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred hhHHHHHHHHHhCEEEEeccCcc
Confidence 22222333 4899999998764
No 301
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.36 E-value=1.3e-06 Score=85.65 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=73.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccc-----cccc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE-----GAHL 343 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie-----~a~~ 343 (421)
.+.++++|..|+|||||||.++..+..- ...++.|...+...+ +.++.++|+||+-. .+.+
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-----------~~~~~~vDlPG~~~a~y~~~~~~ 204 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-----------GKSWYEVDLPGYGRAGYGFELPA 204 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-----------cceEEEEecCCcccccCCccCcc
Confidence 3679999999999999999999876321 224444443332222 35799999999421 1111
Q ss_pred -cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 344 -GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 344 -~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+...++-.-+.--.+++++|++.+....|.. ..+++.+ .+.|+.+|+||||....
T Consensus 205 d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-~i~~~ge-----~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 205 DWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNP-EIAWLGE-----NNVPMTSVFTKCDKQKK 263 (320)
T ss_pred hHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChH-HHHHHhh-----cCCCeEEeeehhhhhhh
Confidence 1112222222222223356778988766555544 3345655 57999999999998654
No 302
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.34 E-value=4.5e-07 Score=89.84 Aligned_cols=124 Identities=18% Similarity=0.180 Sum_probs=67.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccC--CC--------CeeeeccceeecCCCCCCccccccceEEecCCccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD--YP--------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH 342 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~--~p--------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~ 342 (421)
.+|.+||.+|+|||||+|.|.+....... ++ ..++......+... .....++|+||||+-+.-.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~------~~~l~LtiiDTpGfGd~i~ 78 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEEN------GVKLNLTIIDTPGFGDNID 78 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEET------CEEEEEEEEEEC-CSSSST
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccC------CcceEEEEEeCCCcccccc
Confidence 57899999999999999999987643321 11 11122211122211 1234799999999865321
Q ss_pred ccC-------chhHHHHHhc-------------ccCCEEEEEeeCCCC-CChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655 343 LGK-------GLGRNFLRHL-------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (421)
Q Consensus 343 ~~~-------gl~~~fL~~i-------------~radvIl~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK 401 (421)
... -+...|-.++ .|.|++||+++++.. -...+++ .+..|.. ..++|-|+.|
T Consensus 79 n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~Ls~------~vNvIPvIaK 151 (281)
T PF00735_consen 79 NSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRLSK------RVNVIPVIAK 151 (281)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHHTT------TSEEEEEEST
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHhcc------cccEEeEEec
Confidence 100 0111222222 356899999998753 3344544 3334442 4678999999
Q ss_pred CCCCCCCC
Q 014655 402 IDLPEMYD 409 (421)
Q Consensus 402 ~Dl~~~~e 409 (421)
+|....+|
T Consensus 152 aD~lt~~e 159 (281)
T PF00735_consen 152 ADTLTPEE 159 (281)
T ss_dssp GGGS-HHH
T ss_pred ccccCHHH
Confidence 99987654
No 303
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.33 E-value=4.3e-07 Score=83.56 Aligned_cols=124 Identities=19% Similarity=0.056 Sum_probs=82.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g 346 (421)
.+...+++.+||--++||||+|.+.+..-. ..+|.-|- .+-....+... .-...+.+|||.|..|..
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgif-TkdykktIgvdflerqi~v~------~Edvr~mlWdtagqeEfD----- 83 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIKVL------IEDVRSMLWDTAGQEEFD----- 83 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhcccc-ccccccccchhhhhHHHHhh------HHHHHHHHHHhccchhHH-----
Confidence 355667899999999999999999985321 11221110 00000000000 012357899999987642
Q ss_pred hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.....+.+.|.+.++|+.-++..+++....|++.+..- -..+|.++|-||+|+.+..
T Consensus 84 --aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e---~~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 84 --AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE---TERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred --HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH---hccCCeEEeeccchhhHhh
Confidence 12235567888999999999888888777777777653 3579999999999998754
No 304
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.32 E-value=7.2e-07 Score=81.34 Aligned_cols=55 Identities=29% Similarity=0.385 Sum_probs=44.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl 337 (421)
..+|+++|.+|+|||||+|+|.+... .+++.++||.......+. ..+.++||||+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-----------~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-----------PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-----------CCEEEEECCCC
Confidence 35799999999999999999998764 557889999876654332 25899999997
No 305
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.32 E-value=3.3e-07 Score=95.77 Aligned_cols=58 Identities=36% Similarity=0.455 Sum_probs=47.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~ 340 (421)
...||+||+|||||||+||+|.+.+ +.++..|+-|.+-+.-.+ ...+.++|.||++-.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l-----------s~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL-----------SPSVCLCDCPGLVFP 372 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc-----------CCCceecCCCCcccc
Confidence 4689999999999999999999987 467889999986554433 246899999999864
No 306
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=5.4e-07 Score=80.33 Aligned_cols=128 Identities=18% Similarity=0.212 Sum_probs=81.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.++.++|.-+|||+|++-.+--.+.- ...| |..-+...+.+. +-++.++|.-|.- .+..-|.
T Consensus 19 ~rililgldGaGkttIlyrlqvgevv-ttkP--tigfnve~v~yK--------NLk~~vwdLggqt-------SirPyWR 80 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRLQVGEVV-TTKP--TIGFNVETVPYK--------NLKFQVWDLGGQT-------SIRPYWR 80 (182)
T ss_pred eEEEEeeccCCCeeEEEEEcccCccc-ccCC--CCCcCccccccc--------cccceeeEccCcc-------cccHHHH
Confidence 36788999999999998877543311 1111 111122223322 2368999998853 3445566
Q ss_pred HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGFN 420 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl~ 420 (421)
.+.+.+|.++||||.++.+..... ..+..+|.+ +++....+++++||+|.......-+.+..+|++
T Consensus 81 cYy~dt~avIyVVDssd~dris~a~~el~~mL~E--~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~ 147 (182)
T KOG0072|consen 81 CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQE--EELQHAKLLVFANKQDYSGALTRSEVLKMLGLQ 147 (182)
T ss_pred HHhcccceEEEEEeccchhhhhhhHHHHHHHhcc--HhhcCceEEEEeccccchhhhhHHHHHHHhChH
Confidence 778999999999999986643322 223333332 233456689999999998887777777777664
No 307
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=8.9e-07 Score=91.93 Aligned_cols=125 Identities=22% Similarity=0.191 Sum_probs=86.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCc---------------cCCCCeeeeccceeecCCCCCCccccccceEEe
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 332 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~ii 332 (421)
.++.+.+..+|-+-.-|||||-.+|....-.+ ...-+.|+..+...+.+.... ...+.+.++
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~---g~~Y~lnlI 81 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD---GETYVLNLI 81 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC---CCEEEEEEc
Confidence 34566778888899999999999986532222 123355655555455443210 113468999
Q ss_pred cCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 333 DtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
||||+.+..-+ .-+.+..|...++|||+++....+.+..++..++. +.-+|-|+||+||+.++
T Consensus 82 DTPGHVDFsYE-------VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~------~LeIiPViNKIDLP~Ad 144 (603)
T COG0481 82 DTPGHVDFSYE-------VSRSLAACEGALLVVDASQGVEAQTLANVYLALEN------NLEIIPVLNKIDLPAAD 144 (603)
T ss_pred CCCCccceEEE-------ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc------CcEEEEeeecccCCCCC
Confidence 99999886422 34566788889999999998766777777777763 55678899999998765
No 308
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.29 E-value=2.1e-06 Score=75.03 Aligned_cols=106 Identities=20% Similarity=0.232 Sum_probs=67.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.++++||..++|||||+++|-+....-. .| + -+++. +-..+||||..-. ++..-++.+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk----KT---Q--Ave~~----------d~~~IDTPGEy~~---~~~~Y~aL~ 59 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK----KT---Q--AVEFN----------DKGDIDTPGEYFE---HPRWYHALI 59 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhc----cc---c--eeecc----------CccccCCchhhhh---hhHHHHHHH
Confidence 3789999999999999999998763210 01 1 12221 1246899996432 233334445
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
-....+|++++|-.+.++.+ .+.. .+ .....+|+|-|++|+|+++..+
T Consensus 60 tt~~dadvi~~v~~and~~s--~f~p------~f-~~~~~k~vIgvVTK~DLaed~d 107 (148)
T COG4917 60 TTLQDADVIIYVHAANDPES--RFPP------GF-LDIGVKKVIGVVTKADLAEDAD 107 (148)
T ss_pred HHhhccceeeeeecccCccc--cCCc------cc-ccccccceEEEEecccccchHh
Confidence 56688999999999886532 1100 00 0123577999999999996443
No 309
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=2.7e-06 Score=91.17 Aligned_cols=122 Identities=27% Similarity=0.383 Sum_probs=80.6
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC-CCc-----cCCCCeee--eccceee--cCCCCC----CccccccceEEecCCc
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK-PDI-----ADYPFTTL--MPNLGRL--DGDPTL----GAEKYSSEATLADLPG 336 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~-~~i-----a~~pfTTl--~p~~g~v--~~~~~~----~~~~~~~~i~iiDtPG 336 (421)
.+..|+++|+-.+|||+|+..|.... +.. ++.-+|+. ......+ +..+.. +....+.-++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 45689999999999999999997653 211 22222221 1111111 100000 0011233589999999
Q ss_pred ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
+.... ......++.+|++++|||+....+....+.+.+.++ ...|+++|+||+|+.
T Consensus 207 HVnF~-------DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq------~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFS-------DETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ------NRLPIVVVINKVDRL 262 (971)
T ss_pred cccch-------HHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh------ccCcEEEEEehhHHH
Confidence 98753 234566788999999999998888777777777776 368999999999974
No 310
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=3.4e-06 Score=86.98 Aligned_cols=120 Identities=22% Similarity=0.206 Sum_probs=78.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCc---------cCCCCeee-------------eccceeecCCCCCCcccc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI---------ADYPFTTL-------------MPNLGRLDGDPTLGAEKY 325 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---------a~~pfTTl-------------~p~~g~v~~~~~~~~~~~ 325 (421)
|+..-...+||-+|.||||||--.|.----+| ....++|. ...+-.+++.
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~-------- 79 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA-------- 79 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC--------
Confidence 44444578999999999999999875321111 11112221 1111122222
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
+..+.+.||||+.+. .....+.+-.+|..|.|||+....-.+. ..|.+..+. -+.|++-.+||+|..
T Consensus 80 ~~~iNLLDTPGHeDF-------SEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl-----R~iPI~TFiNKlDR~ 146 (528)
T COG4108 80 DCLVNLLDTPGHEDF-------SEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL-----RDIPIFTFINKLDRE 146 (528)
T ss_pred CeEEeccCCCCcccc-------chhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh-----cCCceEEEeeccccc
Confidence 346899999998765 3345678888999999999987653333 345555554 469999999999986
Q ss_pred CCC
Q 014655 406 EMY 408 (421)
Q Consensus 406 ~~~ 408 (421)
..+
T Consensus 147 ~rd 149 (528)
T COG4108 147 GRD 149 (528)
T ss_pred cCC
Confidence 543
No 311
>PTZ00099 rab6; Provisional
Probab=98.26 E-value=2.1e-06 Score=79.08 Aligned_cols=71 Identities=17% Similarity=0.084 Sum_probs=52.4
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..+.||||||...... +. -.+++.||++|+|+|++++.+++....+..++..... ...|+++|+||+|+..
T Consensus 29 v~l~iwDt~G~e~~~~----~~---~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 29 VRLQLWDTAGQERFRS----LI---PSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEECCChHHhhh----cc---HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECccccc
Confidence 4789999999755421 22 2446889999999999987777776666666654331 3578999999999964
No 312
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=3.6e-06 Score=89.23 Aligned_cols=125 Identities=24% Similarity=0.264 Sum_probs=75.9
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC--------------C-Cc--cCCC--------------CeeeeccceeecCCCC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK--------------P-DI--ADYP--------------FTTLMPNLGRLDGDPT 319 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~--------------~-~i--a~~p--------------fTTl~p~~g~v~~~~~ 319 (421)
......++|..+||||||+..|.-.- . .. +.+. +.|.+.....++.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes--- 252 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES--- 252 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec---
Confidence 45578899999999999999875210 0 01 1111 1111111111111
Q ss_pred CCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCC------CChhhHHHHHHHHHhcCCCCCCC
Q 014655 320 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE------NPVNDYRTVKEELRMYNPDYLER 393 (421)
Q Consensus 320 ~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~------~~~~~~~~l~~eL~~~~~~l~~k 393 (421)
-...++++|+||+-+. ....+.-+..||+.++|||++.. ++..+.+.....|+.++ -.
T Consensus 253 -----~~~~~tliDaPGhkdF-------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg----i~ 316 (603)
T KOG0458|consen 253 -----KSKIVTLIDAPGHKDF-------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG----IS 316 (603)
T ss_pred -----CceeEEEecCCCcccc-------chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC----cc
Confidence 1346999999996443 22234445678999999999864 23344555555666543 24
Q ss_pred CEEEEEeCCCCCC-CCCchHHH
Q 014655 394 PFIVVLNKIDLPE-MYDDSSSR 414 (421)
Q Consensus 394 P~IIVlNK~Dl~~-~~e~~~~l 414 (421)
.+||++||||+++ .+++++++
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eI 338 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEI 338 (603)
T ss_pred eEEEEeecccccCccHHHHHHH
Confidence 5899999999986 44555543
No 313
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.25 E-value=3e-07 Score=80.93 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=77.0
Q ss_pred ccCCCCCChhHHHHHHhcCCCCccCCCCeee--eccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHh
Q 014655 277 LVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 354 (421)
Q Consensus 277 LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~ 354 (421)
++|...+|||.|+-++..... .+..-..|. +-..-.+..+ ....++++|||.|.... ....-.+
T Consensus 2 llgds~~gktcllir~kdgaf-l~~~fistvgid~rnkli~~~------~~kvklqiwdtagqerf-------rsvt~ay 67 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAF-LAGNFISTVGIDFRNKLIDMD------DKKVKLQIWDTAGQERF-------RSVTHAY 67 (192)
T ss_pred ccccCccCceEEEEEeccCce-ecCceeeeeeeccccceeccC------CcEEEEEEeeccchHHH-------hhhhHhh
Confidence 689999999999876643321 111111121 1111111111 11347899999997543 2223355
Q ss_pred cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.+.+|++++++|+.+..+++..+.|+.++..|..+ ...+.++.||+|+..
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k~--~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAKE--AVALMLLGNKCDLAH 117 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHHh--hHhHhhhccccccch
Confidence 78899999999999999999999999999998753 466789999999965
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.24 E-value=1.2e-06 Score=87.27 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=41.4
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
+..++|+||||.... ....++.+|.+++|.+... ..++..+...+ .++|.++|+||+|+.
T Consensus 126 g~D~viidT~G~~~~----------e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l-------~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 126 GYDVIIVETVGVGQS----------EVDIANMADTFVVVTIPGT---GDDLQGIKAGL-------MEIADIYVVNKADGE 185 (300)
T ss_pred CCCEEEEeCCCCchh----------hhHHHHhhceEEEEecCCc---cHHHHHHHHHH-------hhhccEEEEEccccc
Confidence 357999999996432 1234667899888865432 23333333322 458889999999998
Q ss_pred CCC
Q 014655 406 EMY 408 (421)
Q Consensus 406 ~~~ 408 (421)
...
T Consensus 186 ~~~ 188 (300)
T TIGR00750 186 GAT 188 (300)
T ss_pred chh
Confidence 654
No 315
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.23 E-value=2e-06 Score=77.90 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=42.0
Q ss_pred ccceEEecCCcccccccccCc-hhHHHHHhcccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKG-LGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~g-l~~~fL~~i~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
..++.++||||+.+....-.. +....+....+.|.+++|+|+..-.. ......+...++. .-+||+||+|
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~--------ad~ivlnk~d 157 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF--------ADRILLNKTD 157 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH--------CCEEEEeccc
Confidence 457899999999764321111 01122345567899999999864211 1122334444443 2378999999
Q ss_pred C
Q 014655 404 L 404 (421)
Q Consensus 404 l 404 (421)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
No 316
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.18 E-value=2.4e-06 Score=81.73 Aligned_cols=128 Identities=20% Similarity=0.128 Sum_probs=88.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|.|+|.+|+||||+=..+.....+ -...++.|++...+++.+-.. --+.+||.-|..+. -+.+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-------l~LnlwDcGgqe~f-------men~ 70 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-------LVLNLWDCGGQEEF-------MENY 70 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-------heeehhccCCcHHH-------HHHH
Confidence 47999999999999998776543222 133466677766665544321 24688999996432 1122
Q ss_pred HH-----hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHH
Q 014655 352 LR-----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSR 414 (421)
Q Consensus 352 L~-----~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l 414 (421)
+. .....++++||+|++..+...++......|+.+........+.+.+.|+|+...++....+
T Consensus 71 ~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if 138 (295)
T KOG3886|consen 71 LSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIF 138 (295)
T ss_pred HhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHH
Confidence 22 2356799999999999888888887777777665444566788999999998876655443
No 317
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.18 E-value=1e-05 Score=92.43 Aligned_cols=110 Identities=24% Similarity=0.153 Sum_probs=65.0
Q ss_pred ChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC----------CccccccceEEecCCcccccccccCchhHHHHH
Q 014655 284 GKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----------GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 284 GKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~----------~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|||||.+|.+........-+.|.+--...+...... ....-...+.|+||||+.... ....+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~-------~lr~~ 545 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT-------SLRKR 545 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHH-------HHHHh
Confidence 3999999999887654333344443222222221000 000001248999999964431 11123
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
....+|++++|+|+++....++.+.+ ..+.. .+.|+++|+||+|+..
T Consensus 546 g~~~aDivlLVVDa~~Gi~~qT~e~I-~~lk~-----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 546 GGSLADLAVLVVDINEGFKPQTIEAI-NILRQ-----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred hcccCCEEEEEEECcccCCHhHHHHH-HHHHH-----cCCCEEEEEECCCCcc
Confidence 35669999999999875444444433 34444 3589999999999964
No 318
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=1.2e-06 Score=79.38 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=74.8
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeee--eccceeecCC---CCCCccccccceEEecCCcccccccccCc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGD---PTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl--~p~~g~v~~~---~~~~~~~~~~~i~iiDtPGlie~a~~~~g 346 (421)
+++...+|..++||||+|...+..+... .-.+|. +-....+.+. +.-....+...+++|||.|.... +.
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~--qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF----RS 82 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNT--QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF----RS 82 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccc--eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH----HH
Confidence 3456678999999999999988765211 001121 1111111111 11111123345899999998654 23
Q ss_pred hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCC
Q 014655 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMY 408 (421)
Q Consensus 347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~ 408 (421)
+.-+| .+.|=..++++|.++..++-..+.|+..|+... ..+.| +|++.||+||.+..
T Consensus 83 LTTAF---fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA--YcE~PDivlcGNK~DL~~~R 140 (219)
T KOG0081|consen 83 LTTAF---FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA--YCENPDIVLCGNKADLEDQR 140 (219)
T ss_pred HHHHH---HHhhccceEEEeccchHHHHHHHHHHHHHHHhh--ccCCCCEEEEcCccchhhhh
Confidence 33344 455667899999998766666666666665421 23444 88899999997653
No 319
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=1e-05 Score=81.39 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=75.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC--Ccc-----CCCCeeeeccceeecC--CCCCCccccccceEEecCCcccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP--DIA-----DYPFTTLMPNLGRLDG--DPTLGAEKYSSEATLADLPGLIEGAHL 343 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~--~ia-----~~pfTTl~p~~g~v~~--~~~~~~~~~~~~i~iiDtPGlie~a~~ 343 (421)
.+|+++|...+|||||.++|+.-.. +.. -.-..|+|--...+.. ...++ ..-.-+++++|.||+.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLp-q~e~lq~tlvDCPGHa----- 81 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLP-QGEQLQFTLVDCPGHA----- 81 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccC-ccccceeEEEeCCCcH-----
Confidence 5799999999999999999975321 111 1223344432222221 11111 1112368999999963
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHH-HHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTV-KEELRMYNPDYLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l-~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
++.+..+...+-.|+.++|||+......+..+.| ..++ .-+..+||+||+|...+.++
T Consensus 82 --sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~-------~c~klvvvinkid~lpE~qr 140 (522)
T KOG0461|consen 82 --SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL-------LCKKLVVVINKIDVLPENQR 140 (522)
T ss_pred --HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh-------hccceEEEEeccccccchhh
Confidence 4566666666778999999999875443333322 2222 23668999999998876443
No 320
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.16 E-value=4.4e-06 Score=84.71 Aligned_cols=62 Identities=13% Similarity=0.152 Sum_probs=39.9
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHH-HHHhcCCCCCCCCEEEEEeCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKE-ELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~-eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
+..++|+||+|+.+... ..+..||++++|++....+ ++..+.. .++ ..-++|+||+|+
T Consensus 148 g~d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~gd---~iq~~k~gi~E--------~aDIiVVNKaDl 206 (332)
T PRK09435 148 GYDVILVETVGVGQSET----------AVAGMVDFFLLLQLPGAGD---ELQGIKKGIME--------LADLIVINKADG 206 (332)
T ss_pred CCCEEEEECCCCccchh----------HHHHhCCEEEEEecCCchH---HHHHHHhhhhh--------hhheEEeehhcc
Confidence 35799999999875421 1256799999998744333 2332222 222 334899999998
Q ss_pred CCCC
Q 014655 405 PEMY 408 (421)
Q Consensus 405 ~~~~ 408 (421)
....
T Consensus 207 ~~~~ 210 (332)
T PRK09435 207 DNKT 210 (332)
T ss_pred cchh
Confidence 7643
No 321
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.14 E-value=7.2e-06 Score=82.68 Aligned_cols=118 Identities=20% Similarity=0.193 Sum_probs=71.2
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-c--------------------------------CCCCeeeeccceeecC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-A--------------------------------DYPFTTLMPNLGRLDG 316 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a--------------------------------~~pfTTl~p~~g~v~~ 316 (421)
+...++..+|...-||||||-+|.-....+ . ...+.|++..+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 344567788999999999999986532221 0 0123344433333222
Q ss_pred CCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCC-CCE
Q 014655 317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPF 395 (421)
Q Consensus 317 ~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~-kP~ 395 (421)
. ..+|+|+||||+.+. .+...--..-||+.|++||+......+.. ..-..... ++ +.+
T Consensus 84 ~--------KRkFIiADTPGHeQY-------TRNMaTGASTadlAIlLVDAR~Gvl~QTr-RHs~I~sL-----LGIrhv 142 (431)
T COG2895 84 E--------KRKFIIADTPGHEQY-------TRNMATGASTADLAILLVDARKGVLEQTR-RHSFIASL-----LGIRHV 142 (431)
T ss_pred c--------cceEEEecCCcHHHH-------hhhhhcccccccEEEEEEecchhhHHHhH-HHHHHHHH-----hCCcEE
Confidence 1 247999999998653 12222223679999999999765433322 22222222 23 557
Q ss_pred EEEEeCCCCCCCC
Q 014655 396 IVVLNKIDLPEMY 408 (421)
Q Consensus 396 IIVlNK~Dl~~~~ 408 (421)
++.+|||||.+-.
T Consensus 143 vvAVNKmDLvdy~ 155 (431)
T COG2895 143 VVAVNKMDLVDYS 155 (431)
T ss_pred EEEEeeecccccC
Confidence 8899999999854
No 322
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=4e-06 Score=83.58 Aligned_cols=129 Identities=22% Similarity=0.241 Sum_probs=81.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-----------c-cCCCCeeeeccce-----------eecCCCCCCccccccce
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-----------I-ADYPFTTLMPNLG-----------RLDGDPTLGAEKYSSEA 329 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-----------i-a~~pfTTl~p~~g-----------~v~~~~~~~~~~~~~~i 329 (421)
.+|++||+-.-|||||..||++-... | -.|.-+++..... .+..... ...+-..+
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~--~~~l~R~V 88 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGA--ETELVRRV 88 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCC--CccEEEEE
Confidence 47999999999999999999984311 1 1122222111000 0110000 00123468
Q ss_pred EEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 330 TLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 330 ~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.|+|.||+.- |-...|.-..-.|..++||.++.+.|.-+-+..+-.|+... -+.+|||-||+|+...++
T Consensus 89 SfVDaPGHe~-------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig----ik~iiIvQNKIDlV~~E~ 157 (415)
T COG5257 89 SFVDAPGHET-------LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG----IKNIIIVQNKIDLVSRER 157 (415)
T ss_pred EEeeCCchHH-------HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc----cceEEEEecccceecHHH
Confidence 9999999632 33334444455689999999999887766666666666543 366899999999998766
Q ss_pred chHHH
Q 014655 410 DSSSR 414 (421)
Q Consensus 410 ~~~~l 414 (421)
.++..
T Consensus 158 AlE~y 162 (415)
T COG5257 158 ALENY 162 (415)
T ss_pred HHHHH
Confidence 55443
No 323
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=5.9e-06 Score=73.48 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=77.9
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce--eecCCCCCCccccccceEEecCCcccccccccCc
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g--~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g 346 (421)
..-+++-.++|.-++|||.||..++..+ ..++.|.|. ....| +++.. ....++.||||.|....
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekk-fmadcphti-gvefgtriievs------gqkiklqiwdtagqerf------ 73 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKK-FMADCPHTI-GVEFGTRIIEVS------GQKIKLQIWDTAGQERF------ 73 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHH-HhhcCCccc-ceecceeEEEec------CcEEEEEEeecccHHHH------
Confidence 3456788899999999999999998765 234444332 11111 11111 11347899999997543
Q ss_pred hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
......+.+.+-..++|+|++.......+..|+...+.+- ..+..++++.||.||....
T Consensus 74 -ravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt--npnt~i~lignkadle~qr 132 (215)
T KOG0097|consen 74 -RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLESQR 132 (215)
T ss_pred -HHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC--CCceEEEEecchhhhhhcc
Confidence 2222344567778899999998776666555555444321 1234477889999997654
No 324
>PRK12288 GTPase RsgA; Reviewed
Probab=98.10 E-value=2.5e-06 Score=87.02 Aligned_cols=67 Identities=25% Similarity=0.276 Sum_probs=45.1
Q ss_pred eecccCCCCCChhHHHHHHhcCCC-CccCCC-------CeeeeccceeecCCCCCCccccccceEEecCCcccccccc--
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-- 343 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~p-------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-- 343 (421)
-++|+|.||||||||||+|.+... .+++.+ .||....+..+.. ...++||||+.+..-.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-----------~~~liDTPGir~~~l~~~ 275 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-----------GGDLIDSPGVREFGLWHL 275 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-----------CCEEEECCCCCcccCCCC
Confidence 378999999999999999997653 334443 3666555544432 2469999999875432
Q ss_pred -cCchhHHH
Q 014655 344 -GKGLGRNF 351 (421)
Q Consensus 344 -~~gl~~~f 351 (421)
..++...|
T Consensus 276 ~~~~l~~~F 284 (347)
T PRK12288 276 EPEQVTQGF 284 (347)
T ss_pred CHHHHHHhh
Confidence 23565555
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.09 E-value=4.6e-06 Score=74.47 Aligned_cols=55 Identities=33% Similarity=0.498 Sum_probs=41.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGL 337 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGl 337 (421)
..+|.++|.+|+|||||+|+|.+... .+.+.+.+|.......+ ...+.++||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI-----------TSKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc-----------CCCEEEEECcCC
Confidence 35789999999999999999997654 34667777765432222 135899999995
No 326
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.07 E-value=1.5e-05 Score=80.75 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=73.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc----cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc--
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI----ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-- 346 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i----a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g-- 346 (421)
..|.++|..|.|||||+|.|.+....- .+.......+.+-.......+..+.+.-.++++||||+.+.-.- ..
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~~w 102 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SKCW 102 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-cccH
Confidence 578999999999999999999873211 11111111111111111111112233457999999999774321 11
Q ss_pred ------hhHHHHHhc--------------ccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 347 ------LGRNFLRHL--------------RRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 347 ------l~~~fL~~i--------------~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
+...|-.++ .|.+++||.+-++... ..-+++. +..|.. ..-+|-|+-|+|..
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~-Mk~ls~------~vNlIPVI~KaD~l 175 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEA-MKRLSK------RVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHH-HHHHhc------ccCeeeeeeccccC
Confidence 111221111 3568999999987532 2334443 333432 35578899999998
Q ss_pred CCCCc
Q 014655 406 EMYDD 410 (421)
Q Consensus 406 ~~~e~ 410 (421)
..+|.
T Consensus 176 T~~El 180 (373)
T COG5019 176 TDDEL 180 (373)
T ss_pred CHHHH
Confidence 77654
No 327
>PRK12289 GTPase RsgA; Reviewed
Probab=98.06 E-value=3.1e-06 Score=86.47 Aligned_cols=57 Identities=25% Similarity=0.233 Sum_probs=41.7
Q ss_pred eecccCCCCCChhHHHHHHhcCC-CCccCCCC-------eeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK-PDIADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 341 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pf-------TTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a 341 (421)
.++|+|.||||||||||+|.... ..+.+.+. ||.+..+..+. ....++||||+.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~-----------~g~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELP-----------NGGLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECC-----------CCcEEEeCCCccccc
Confidence 37999999999999999999764 34456666 67666544332 124899999997654
No 328
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.7e-05 Score=85.59 Aligned_cols=129 Identities=23% Similarity=0.225 Sum_probs=76.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeee-----eccce---eecC---------------------CC-C
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL-----MPNLG---RLDG---------------------DP-T 319 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl-----~p~~g---~v~~---------------------~~-~ 319 (421)
+...+|+|.|..|+||||++||+...+.-....-.||- ....| +.-. ++ .
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 55678999999999999999999887654433333331 00000 0000 00 0
Q ss_pred ---------CCc---cccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC
Q 014655 320 ---------LGA---EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN 387 (421)
Q Consensus 320 ---------~~~---~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~ 387 (421)
++. .-....+.++|.||+.-+.. +....-++...+|++|||+.+.+..+......+...-+
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~--- 259 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE--- 259 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchh----hhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc---
Confidence 000 00123689999999875532 22334466788999999999876544444333332222
Q ss_pred CCCCCCC-EEEEEeCCCCCCCCC
Q 014655 388 PDYLERP-FIVVLNKIDLPEMYD 409 (421)
Q Consensus 388 ~~l~~kP-~IIVlNK~Dl~~~~e 409 (421)
++| +.|+.||+|...++.
T Consensus 260 ----~KpniFIlnnkwDasase~ 278 (749)
T KOG0448|consen 260 ----EKPNIFILNNKWDASASEP 278 (749)
T ss_pred ----cCCcEEEEechhhhhcccH
Confidence 355 566778889877643
No 329
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.03 E-value=2.9e-06 Score=86.54 Aligned_cols=73 Identities=26% Similarity=0.409 Sum_probs=55.5
Q ss_pred hcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEec
Q 014655 255 VLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (421)
Q Consensus 255 ~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiD 333 (421)
..|..++.. +|+....||+||+||+||||+||+|...+.. +++.|+-|..-.. |+. +..+.++|
T Consensus 239 ~lgny~~~~----~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe--V~L---------dk~i~llD 303 (435)
T KOG2484|consen 239 VLGNYCRKG----ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE--VKL---------DKKIRLLD 303 (435)
T ss_pred HhcCccccc----ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh--eec---------cCCceecc
Confidence 345555532 4788899999999999999999999998874 5788887765443 333 24799999
Q ss_pred CCccccccc
Q 014655 334 LPGLIEGAH 342 (421)
Q Consensus 334 tPGlie~a~ 342 (421)
.||++-...
T Consensus 304 sPgiv~~~~ 312 (435)
T KOG2484|consen 304 SPGIVPPSI 312 (435)
T ss_pred CCceeecCC
Confidence 999986543
No 330
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=2.3e-05 Score=81.04 Aligned_cols=116 Identities=22% Similarity=0.128 Sum_probs=83.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
-|+..|.---|||||+.++++..... ...-++|.|-.+...+.. +..+.++|.||+.+. ...
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--------d~~~~fIDvpgh~~~-------i~~ 66 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--------DGVMGFIDVPGHPDF-------ISN 66 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--------CCceEEeeCCCcHHH-------HHH
Confidence 36778999999999999999976544 335577887665555433 236899999998653 445
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+..+.-.|..++|||+.+....+..+ ....|..++ -+..+||+||+|+.+..+
T Consensus 67 miag~~~~d~alLvV~~deGl~~qtgE-hL~iLdllg----i~~giivltk~D~~d~~r 120 (447)
T COG3276 67 LLAGLGGIDYALLVVAADEGLMAQTGE-HLLILDLLG----IKNGIIVLTKADRVDEAR 120 (447)
T ss_pred HHhhhcCCceEEEEEeCccCcchhhHH-HHHHHHhcC----CCceEEEEeccccccHHH
Confidence 566677889999999997766555544 334566543 233599999999997653
No 331
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.7e-05 Score=78.45 Aligned_cols=120 Identities=22% Similarity=0.227 Sum_probs=75.4
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCC-----------ccC-----CCCeeeeccceeecCCCCCCccccccceEEecCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPD-----------IAD-----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-----------ia~-----~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP 335 (421)
-.+|+.+|.-+-|||||..+|+..-.+ +.+ .-+.|+.+....++.. ...+..+|.|
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~--------~rhyahVDcP 83 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA--------NRHYAHVDCP 83 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC--------CceEEeccCC
Confidence 358999999999999999999753210 111 1233443332222222 2468999999
Q ss_pred cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCCchH
Q 014655 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYDDSS 412 (421)
Q Consensus 336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e~~~ 412 (421)
|+.+. .+..+--....|..|+|+.+.+....+..+.++- .+. ...| +++++||+|+.++.+.++
T Consensus 84 GHaDY-------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLl-arq-----vGvp~ivvflnK~Dmvdd~elle 148 (394)
T COG0050 84 GHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTREHILL-ARQ-----VGVPYIVVFLNKVDMVDDEELLE 148 (394)
T ss_pred ChHHH-------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhh-hhh-----cCCcEEEEEEecccccCcHHHHH
Confidence 98664 3333444467799999999988654444433321 122 3565 677899999998766543
No 332
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.00 E-value=2.9e-06 Score=86.39 Aligned_cols=59 Identities=29% Similarity=0.401 Sum_probs=48.1
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~ 340 (421)
.-+.|||||+||+||||+||+|...++. +++.|+.|..-++.++ -.+|.+||.||+.-.
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-----------mkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-----------MKRIFLIDCPGVVYP 365 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH-----------HhceeEecCCCccCC
Confidence 3457999999999999999999998874 5999999976555443 247999999999753
No 333
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.98 E-value=5.1e-06 Score=80.69 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=39.7
Q ss_pred eecccCCCCCChhHHHHHHhcCCC-CccC-------CCCeeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKP-DIAD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 341 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~-~ia~-------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a 341 (421)
.++|+|.+|||||||+|+|.+... .+++ ...||.......+. ...++||||+.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~------------~~~liDtPG~~~~~ 185 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFH------------GGLIADTPGFNEFG 185 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcC------------CcEEEeCCCccccC
Confidence 688999999999999999997642 2222 23467665544431 23899999998743
No 334
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.82 E-value=1.9e-06 Score=83.99 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=38.9
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++|+.|.|.-. .=..-..-||.+++|+-+...+..+-++.=.-|+ .=++|+||+|+..
T Consensus 122 ~D~IiiETVGvGQ----------sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----------aDi~vVNKaD~~g 181 (266)
T PF03308_consen 122 FDVIIIETVGVGQ----------SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI----------ADIFVVNKADRPG 181 (266)
T ss_dssp -SEEEEEEESSST----------HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SEEEEE--SHHH
T ss_pred CCEEEEeCCCCCc----------cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh----------ccEEEEeCCChHH
Confidence 4577877777533 3345567899999999887766544433221122 2389999999776
Q ss_pred CCCch
Q 014655 407 MYDDS 411 (421)
Q Consensus 407 ~~e~~ 411 (421)
++...
T Consensus 182 A~~~~ 186 (266)
T PF03308_consen 182 ADRTV 186 (266)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 335
>PRK00098 GTPase RsgA; Reviewed
Probab=97.81 E-value=2.4e-05 Score=78.02 Aligned_cols=56 Identities=30% Similarity=0.326 Sum_probs=39.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC-CccCCC-------CeeeeccceeecCCCCCCccccccceEEecCCcccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIE 339 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~p-------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie 339 (421)
..++|+|.+|||||||+|+|.+... ...+.+ .||.......+. ....++||||+.+
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~-----------~~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP-----------GGGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-----------CCcEEEECCCcCc
Confidence 4689999999999999999998653 223333 255554443332 2358999999985
No 336
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=4.2e-05 Score=83.04 Aligned_cols=124 Identities=24% Similarity=0.246 Sum_probs=75.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCC------C-Ccc--cc-ccceEEecCCcc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT------L-GAE--KY-SSEATLADLPGL 337 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~------~-~~~--~~-~~~i~iiDtPGl 337 (421)
.||. +-++++|+..+|||-||..|.+.++.-..+-+.|...-...+....+ + ... .+ -..+.+|||||+
T Consensus 472 ~lRS-PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 472 NLRS-PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hcCC-ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 3444 35788999999999999999887665555544443211111110000 0 000 00 124899999997
Q ss_pred cccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 338 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 338 ie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
..... +.. +-...||+.|+|||+.+..-.+.++.+ +.|+. .+.|+||.+||+|..
T Consensus 551 EsFtn----lRs---rgsslC~~aIlvvdImhGlepqtiESi-~lLR~-----rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 551 ESFTN----LRS---RGSSLCDLAILVVDIMHGLEPQTIESI-NLLRM-----RKTPFIVALNKIDRL 605 (1064)
T ss_pred hhhhh----hhh---ccccccceEEEEeehhccCCcchhHHH-HHHHh-----cCCCeEEeehhhhhh
Confidence 54421 111 224679999999999986544444443 34444 468999999999975
No 337
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.79 E-value=2.2e-05 Score=71.74 Aligned_cols=57 Identities=25% Similarity=0.261 Sum_probs=35.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCC-CCc---cC----CCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK-PDI---AD----YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~i---a~----~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~ 340 (421)
..++|+|.++||||||+|+|.... ..+ +. -..||....+..+. ....||||||+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-----------~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-----------DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-----------TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-----------CCcEEEECCCCCcc
Confidence 678999999999999999999873 222 11 12344443333331 35699999999764
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.73 E-value=5.2e-05 Score=66.88 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=41.1
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+++++++||++++|+|+..+....+ ..+.+.+.... .++|+++|+||+|+.+.+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~---~~k~~iivlNK~DL~~~~ 58 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD---PRKKNILLLNKADLLTEE 58 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc---CCCcEEEEEechhcCCHH
Confidence 457899999999999999987654333 24455555431 368999999999997544
No 339
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00011 Score=74.99 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=72.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-------cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG- 344 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~- 344 (421)
+.+.++|..+.|||||+|.|......- ...+-.|.......+... .+.+.-+++|+||||+.+.-...
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~ie----e~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIE----ENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeec----CCCeEEeeEEeccCCCcccccccc
Confidence 478899999999999999998763211 011111211111111111 11234579999999997642210
Q ss_pred --C----chhHHHHHhc-------------ccCCEEEEEeeCCCC-CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 345 --K----GLGRNFLRHL-------------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 345 --~----gl~~~fL~~i-------------~radvIl~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
+ -+...|-+++ .|.+++||.|..+.. ...-+++.+ ..|. ....+|-|+-|+|.
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~M-k~l~------~~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFM-KKLS------KKVNLIPVIAKADT 170 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHH-HHHh------ccccccceeecccc
Confidence 0 1122222222 267999999998764 223344332 3333 24567889999999
Q ss_pred CCCCCc
Q 014655 405 PEMYDD 410 (421)
Q Consensus 405 ~~~~e~ 410 (421)
...++.
T Consensus 171 lT~~El 176 (366)
T KOG2655|consen 171 LTKDEL 176 (366)
T ss_pred CCHHHH
Confidence 887654
No 340
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.63 E-value=0.00013 Score=55.40 Aligned_cols=47 Identities=32% Similarity=0.536 Sum_probs=30.9
Q ss_pred HHhcccCCEEEEEeeCCC--CCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 352 LRHLRRTRLLVHVIDAAA--ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~--~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
|+|+ .++|+|++|+|. +.+.++...|+++++..- .++|+++|+||+|
T Consensus 10 L~hL--~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F---~~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHL--ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF---PNKPVIVVLNKID 58 (58)
T ss_dssp GGGT---SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT---TTS-EEEEE--TT
T ss_pred HHhh--cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc---CCCCEEEEEeccC
Confidence 4454 478999999987 355677777888887642 3799999999998
No 341
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.63 E-value=0.00037 Score=67.40 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=72.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-------c-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-------I-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-------i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~ 344 (421)
+.|.+||..+.|||||+|.|..++.. . .++|-||......++-... ...-+++++||||+-+.-...
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~-----gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEK-----GVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeec-----ceEEEEEEecCCCcccccCcc
Confidence 57999999999999999999765421 1 2566666544333332221 123479999999986532110
Q ss_pred C---c----hhH---HHHH---------hc--ccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655 345 K---G----LGR---NFLR---------HL--RRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (421)
Q Consensus 345 ~---g----l~~---~fL~---------~i--~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~ 402 (421)
. - +.. .||+ +| -|.++++|.+.++.... .-+++.+...-+- ..+|-|+-|+
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-------vNvvPVIaka 194 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-------VNVVPVIAKA 194 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-------heeeeeEeec
Confidence 0 0 111 1221 22 24678999998876321 2344433332221 3467799999
Q ss_pred CCCCCCC
Q 014655 403 DLPEMYD 409 (421)
Q Consensus 403 Dl~~~~e 409 (421)
|-..-+|
T Consensus 195 DtlTleE 201 (336)
T KOG1547|consen 195 DTLTLEE 201 (336)
T ss_pred ccccHHH
Confidence 9766544
No 342
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.62 E-value=5.8e-05 Score=75.18 Aligned_cols=65 Identities=25% Similarity=0.308 Sum_probs=46.4
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL 343 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~ 343 (421)
.-..|.+||.||+|||||+|++.... ..+..+|+.|......+-... ...+.++||||++.....
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~--------rp~vy~iDTPGil~P~I~ 212 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH--------RPPVYLIDTPGILVPSIV 212 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc--------CCceEEecCCCcCCCCCC
Confidence 34578999999999999999986543 234788998876544221111 236899999999876543
No 343
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.58 E-value=0.00017 Score=84.40 Aligned_cols=132 Identities=23% Similarity=0.209 Sum_probs=73.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc----ccC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----LGK 345 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~----~~~ 345 (421)
-.++=..+||.|++||||||+.- +-+....+....+ ...+ +..... -+-++..+.+++||+|..-... .+.
T Consensus 109 Y~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~--~~~~-~~~t~~-c~wwf~~~avliDtaG~y~~~~~~~~~~~ 183 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAA--ALRG-VGGTRN-CDWWFTDEAVLIDTAGRYTTQDSDPEEDA 183 (1169)
T ss_pred hcCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccc--cccC-CCCCcc-cceEecCCEEEEcCCCccccCCCcccccH
Confidence 34455689999999999999987 3332111110000 0000 000000 0113557889999999653211 233
Q ss_pred chhHHHHHhcc------cCCEEEEEeeCCCCC--Chhh----HHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCC
Q 014655 346 GLGRNFLRHLR------RTRLLVHVIDAAAEN--PVND----YRTVKEELRMYNPDY-LERPFIVVLNKIDLPE 406 (421)
Q Consensus 346 gl~~~fL~~i~------radvIl~VvD~s~~~--~~~~----~~~l~~eL~~~~~~l-~~kP~IIVlNK~Dl~~ 406 (421)
.....||..+. -.+.||++||+.+-. ..++ ...++.-|.+....+ ...|+.||+||||+..
T Consensus 184 ~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 184 AAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 44566777663 369999999987531 1111 123333333222111 4689999999999874
No 344
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.57 E-value=5.9e-05 Score=74.89 Aligned_cols=57 Identities=32% Similarity=0.260 Sum_probs=38.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-ccC-------CCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IAD-------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~-------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~ 340 (421)
..++++|.+|||||||+|+|++.... ... -..||.......+. ....++||||+.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~-----------~~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP-----------GGGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC-----------CCCEEEECCCCCcc
Confidence 46899999999999999999986532 121 22345444332221 13479999999763
No 345
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.56 E-value=0.00056 Score=61.42 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=38.7
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
...+.|+||||.... +...+..||.+++|+..+ ..+.+..++-+. ....-++|+||+|
T Consensus 91 ~~D~iiIDtaG~~~~----------~~~~~~~Ad~~ivv~tpe---~~D~y~~~k~~~-------~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS----------EVDIASMADTTVVVMAPG---AGDDIQAIKAGI-------MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh----------hhhHHHhCCEEEEEECCC---chhHHHHhhhhH-------hhhcCEEEEeCCC
Confidence 357999999996432 345678899999998776 233444333322 2345689999998
No 346
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.56 E-value=7e-05 Score=67.77 Aligned_cols=112 Identities=23% Similarity=0.272 Sum_probs=73.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|+++|.+..|||||+-...+.+-.. .+..++ +.-....+... ...-.+.+||.-|..+ |
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~------~t~IsfSIwdlgG~~~-----------~ 82 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIR------GTDISFSIWDLGGQRE-----------F 82 (205)
T ss_pred EEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEec------ceEEEEEEEecCCcHh-----------h
Confidence 489999999999999999988765321 111111 00000011111 0123689999999643 4
Q ss_pred HHhc----ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 352 LRHL----RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 352 L~~i----~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
..++ ..+-+|+|++|.+.+.+......|....+.++. ...| |+|.+|-|+.
T Consensus 83 ~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 83 INMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIP-ILVGTKYDLF 137 (205)
T ss_pred hccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCC--ccce-EEeccchHhh
Confidence 4554 456789999999998888888878777776553 4566 6679998863
No 347
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.56 E-value=0.00041 Score=73.44 Aligned_cols=133 Identities=23% Similarity=0.277 Sum_probs=79.0
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCC------cccc------------------
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLG------AEKY------------------ 325 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~------~~~~------------------ 325 (421)
.+++|.+||.-.|||||.|..+..++... ..-..-|..|.-.++.-.|..- +..|
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 35689999999999999999998776433 2222223333222221111000 0000
Q ss_pred ------------------------ccceEEecCCcccccc-----cccC-chhHHHHHhcccCCEEEEEeeCCCCCChhh
Q 014655 326 ------------------------SSEATLADLPGLIEGA-----HLGK-GLGRNFLRHLRRTRLLVHVIDAAAENPVND 375 (421)
Q Consensus 326 ------------------------~~~i~iiDtPGlie~a-----~~~~-gl~~~fL~~i~radvIl~VvD~s~~~~~~~ 375 (421)
-.+++++|.||+|..- .+.+ .+......|++..++||++|--.+-+. +
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA--E 464 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA--E 464 (980)
T ss_pred HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch--h
Confidence 0248999999999742 2222 233344667889999999985333222 2
Q ss_pred HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 376 YRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 376 ~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
-..+...+...+| .++..|+|++|.|+.+.
T Consensus 465 RSnVTDLVsq~DP--~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 RSIVTDLVSQMDP--HGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhHHHHHHhcCC--CCCeeEEEEeecchhhh
Confidence 2233444444554 67889999999999764
No 348
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.54 E-value=0.00012 Score=68.90 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=22.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..++.|+|+|++|||||||++++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998754
No 349
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.47 E-value=6.9e-05 Score=74.40 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=39.6
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
++.++|+.|-|.-+. =..-.+-+|.+++|.=+...+..+- ++.-+ .+.-=|+|+||+|+.
T Consensus 143 G~DvIIVETVGvGQs----------ev~I~~~aDt~~~v~~pg~GD~~Q~---iK~Gi-------mEiaDi~vINKaD~~ 202 (323)
T COG1703 143 GYDVIIVETVGVGQS----------EVDIANMADTFLVVMIPGAGDDLQG---IKAGI-------MEIADIIVINKADRK 202 (323)
T ss_pred CCCEEEEEecCCCcc----------hhHHhhhcceEEEEecCCCCcHHHH---HHhhh-------hhhhheeeEeccChh
Confidence 346788888876432 2244567899888887665554333 33222 223349999999977
Q ss_pred CCCC
Q 014655 406 EMYD 409 (421)
Q Consensus 406 ~~~e 409 (421)
+++.
T Consensus 203 ~A~~ 206 (323)
T COG1703 203 GAEK 206 (323)
T ss_pred hHHH
Confidence 6643
No 350
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.46 E-value=0.00019 Score=64.23 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=37.9
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
++.++.+|++++|+|++.+.... ...+.+.|... ..++|+++|+||+|+.+.+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE---KPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc---cCCCCEEEEEEchhcCCHH
Confidence 46789999999999998754322 23455555542 1358999999999997654
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00025 Score=75.32 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=72.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.-|++||+|++|||||++.|.+.-.. .|++...|-+.... .-..++++...|.-+ .++.
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~tk------~ti~~i~GPiTvvs-----gK~RRiTflEcp~Dl----------~~mi 128 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRFTK------QTIDEIRGPITVVS-----GKTRRITFLECPSDL----------HQMI 128 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHHHH------hhhhccCCceEEee-----cceeEEEEEeChHHH----------HHHH
Confidence 35789999999999999999875321 23333333222111 012479999998422 2455
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCCCch
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMYDDS 411 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~e~~ 411 (421)
....-||++|++||..-..-.+.++.| +.|.. ..-| ++-|++..|+-....-+
T Consensus 129 DvaKIaDLVlLlIdgnfGfEMETmEFL-nil~~-----HGmPrvlgV~ThlDlfk~~stL 182 (1077)
T COG5192 129 DVAKIADLVLLLIDGNFGFEMETMEFL-NILIS-----HGMPRVLGVVTHLDLFKNPSTL 182 (1077)
T ss_pred hHHHhhheeEEEeccccCceehHHHHH-HHHhh-----cCCCceEEEEeecccccChHHH
Confidence 666778999999999876555665544 34443 2344 67799999998765433
No 352
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00026 Score=77.27 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=76.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccC-CCCeee------eccce--eecCCCCCCccccccceEEecCCccccccc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPFTTL------MPNLG--RLDGDPTLGAEKYSSEATLADLPGLIEGAH 342 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~-~pfTTl------~p~~g--~v~~~~~~~~~~~~~~i~iiDtPGlie~a~ 342 (421)
+..|.+|-+-.-|||||...|......|+. ..++-+ +.+.. +++...+ ....-+..+.+||+||+++..+
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~i-s~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAI-SLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccc-ccccCceEEEEecCCCccchhh
Confidence 457889999999999999999877654422 121111 11110 0000000 0000124689999999998744
Q ss_pred ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
+ .-....-||..+++||+......+.+..+++.... +...++|+||+|.
T Consensus 88 e-------vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~------~~~~~lvinkidr 136 (887)
T KOG0467|consen 88 E-------VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE------GLKPILVINKIDR 136 (887)
T ss_pred h-------hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc------cCceEEEEehhhh
Confidence 3 22345678999999999888777777777766553 4667999999994
No 353
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.42 E-value=0.00047 Score=72.23 Aligned_cols=69 Identities=13% Similarity=0.160 Sum_probs=39.7
Q ss_pred cceEEecCCcccccccccCchhHHHHH--hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~--~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..++|+||||.... +..+-....+ .....+.+++|+|++... +... ..+.|.. .-.+.-+|+||+|.
T Consensus 183 ~DvViIDTaGr~~~---d~~lm~El~~i~~~~~p~e~lLVlda~~Gq--~a~~----~a~~F~~--~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 183 FDIIIVDTSGRHKQ---EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ--AAEA----QAKAFKD--SVDVGSVIITKLDG 251 (429)
T ss_pred CCEEEEECCCCCcc---hHHHHHHHHHHhhhcCCcEEEEEeccccCh--hHHH----HHHHHHh--ccCCcEEEEECccC
Confidence 57999999996543 1222222211 223468899999987542 1211 2233321 12456788999997
Q ss_pred CC
Q 014655 405 PE 406 (421)
Q Consensus 405 ~~ 406 (421)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 54
No 354
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.40 E-value=0.00089 Score=71.53 Aligned_cols=120 Identities=21% Similarity=0.165 Sum_probs=71.3
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
|.+..+.++|..|+|||.||+++.+....- .+..++...+. ++..... ....-+.+-|++-. +.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~a--vn~v~~~---g~~k~LiL~ei~~~-~~--------- 486 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYA--VNSVEVK---GQQKYLILREIGED-DQ--------- 486 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCcee--eeeeeec---cccceEEEeecCcc-cc---------
Confidence 456678999999999999999999865433 22222221111 1100000 00123555555543 11
Q ss_pred HHHHhc-ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 350 NFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 ~fL~~i-~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.++..- ..||++++|+|.+.+...+- +..+...|... ...|+++|+.|+|+.+..+
T Consensus 487 ~~l~~ke~~cDv~~~~YDsS~p~sf~~---~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q 543 (625)
T KOG1707|consen 487 DFLTSKEAACDVACLVYDSSNPRSFEY---LAEVYNKYFDL-YKIPCLMVATKADLDEVPQ 543 (625)
T ss_pred ccccCccceeeeEEEecccCCchHHHH---HHHHHHHhhhc-cCCceEEEeeccccchhhh
Confidence 111111 57999999999997665433 44444444333 6799999999999977653
No 355
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00013 Score=78.10 Aligned_cols=128 Identities=23% Similarity=0.194 Sum_probs=79.3
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCC---CccC--CCCeeeec-----cceeecCCCCCCccccccceEEecCCcc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP---DIAD--YPFTTLMP-----NLGRLDGDPTLGAEKYSSEATLADLPGL 337 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~---~ia~--~pfTTl~p-----~~g~v~~~~~~~~~~~~~~i~iiDtPGl 337 (421)
.++.+..|+++-+-.|||||+-.++.--.. .+.+ .-.++.+. ..|+..-....-..|-...+.+|||||+
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 455778899999999999999998753211 1111 01111110 1111000000000122458999999999
Q ss_pred cccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 338 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 338 ie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
++..-+ ..+.++-.|..++|+|+.... +.+...++..+..| +.|.|..+||+|...+.
T Consensus 115 vDFT~E-------VeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~ry-----~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 115 VDFTFE-------VERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKRY-----NVPRICFINKMDRMGAS 172 (721)
T ss_pred eeEEEE-------ehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHhc-----CCCeEEEEehhhhcCCC
Confidence 986432 224455568889999988765 34446677778876 48999999999998765
No 356
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.31 E-value=0.0011 Score=60.15 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=40.5
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..+.++||||........-..-..+ ......+.+++|+|+.. ..+..+.+...++. .+ ..-+|+||+|...
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l-~~~~~~~~~~lVv~~~~--~~~~~~~~~~~~~~-----~~-~~~viltk~D~~~ 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKI-KRVVKPDEVLLVVDAMT--GQDAVNQAKAFNEA-----LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHH-HhhcCCCeEEEEEECCC--ChHHHHHHHHHHhh-----CC-CCEEEEECCcCCC
Confidence 4689999999753210000001122 22345899999999853 23333333333332 12 3577889999876
Q ss_pred CC
Q 014655 407 MY 408 (421)
Q Consensus 407 ~~ 408 (421)
..
T Consensus 154 ~~ 155 (173)
T cd03115 154 RG 155 (173)
T ss_pred Cc
Confidence 43
No 357
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.31 E-value=0.00076 Score=68.15 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.0
Q ss_pred hceecccCCCCCChhHHHHHHhc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..-|+|+|++|+||||++..|..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34689999999999999999865
No 358
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.31 E-value=0.0001 Score=67.84 Aligned_cols=74 Identities=24% Similarity=0.323 Sum_probs=39.8
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
..+.++.+.|+.+.... . +....+...-..+.++.|+|+..-....+. ..+...++ ..-+||+||+|+.
T Consensus 85 ~d~IiIE~sG~a~p~~l-~-~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~--------~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPL-I-LQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA--------FADVIVLNKIDLV 154 (178)
T ss_dssp -SEEEEEEECSSGGGGH-H-HHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC--------T-SEEEEE-GGGH
T ss_pred cCEEEECCccccccchh-h-hccccccccccccceeEEeccccccccccchhhhhhcch--------hcCEEEEeccccC
Confidence 46889999997654322 0 011222333456889999999652111122 22333332 2238899999998
Q ss_pred CCCCc
Q 014655 406 EMYDD 410 (421)
Q Consensus 406 ~~~e~ 410 (421)
+.++.
T Consensus 155 ~~~~~ 159 (178)
T PF02492_consen 155 SDEQK 159 (178)
T ss_dssp HHH--
T ss_pred ChhhH
Confidence 77643
No 359
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.30 E-value=6.4e-05 Score=74.83 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=23.4
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-+.+.-|.|+|.|||||||||+.+.+.
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3355678999999999999999988764
No 360
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.23 E-value=0.00047 Score=70.27 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.6
Q ss_pred hhceecccCCCCCChhHHHHHHhcC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.++-..|.|+-+||||||||.+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 3455678899999999999999754
No 361
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.23 E-value=0.0003 Score=70.13 Aligned_cols=67 Identities=30% Similarity=0.307 Sum_probs=42.4
Q ss_pred eecccCCCCCChhHHHHHHhcCC-CCc---c----CCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc--cc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK-PDI---A----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA--HL 343 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~-~~i---a----~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a--~~ 343 (421)
-.+|+|.+++|||||+|+|.... .++ + .--.||....+..+.. .=.|+||||+.+-. +.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~-----------gG~iiDTPGf~~~~l~~~ 234 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG-----------GGWIIDTPGFRSLGLAHL 234 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC-----------CCEEEeCCCCCccCcccC
Confidence 46899999999999999998642 222 1 1234555555444421 23789999997642 22
Q ss_pred -cCchhHHH
Q 014655 344 -GKGLGRNF 351 (421)
Q Consensus 344 -~~gl~~~f 351 (421)
.+.+...|
T Consensus 235 ~~e~l~~~F 243 (301)
T COG1162 235 EPEDLVQAF 243 (301)
T ss_pred CHHHHHHHh
Confidence 33455555
No 362
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.21 E-value=0.00066 Score=60.46 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=35.7
Q ss_pred HHHHhccc-CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRHLRR-TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~i~r-advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++|+.+ ||++++|+|++++....+. .+...+.. .++|+++|+||+|+.+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~-----~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE-----LGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh-----CCCcEEEEEEhHHhCCH
Confidence 34566655 9999999999875433332 23333332 35899999999999653
No 363
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.19 E-value=0.00026 Score=67.24 Aligned_cols=77 Identities=26% Similarity=0.270 Sum_probs=46.1
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccC---CEEEEEeeCCCCCChhhHHH---HHHHHHhcCCCCCCCCEEEEE
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRT---RLLVHVIDAAAENPVNDYRT---VKEELRMYNPDYLERPFIVVL 399 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~ra---dvIl~VvD~s~~~~~~~~~~---l~~eL~~~~~~l~~kP~IIVl 399 (421)
...+.+.|.||.||-..- .-+-..+.+|+.+- =.++|++|+.= .....+. .+..|... ...+.|.|=|+
T Consensus 97 eddylifDcPGQIELytH-~pVm~~iv~hl~~~~F~~c~Vylldsqf--~vD~~KfiSG~lsAlsAM--i~lE~P~INvl 171 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTH-LPVMPQIVEHLKQWNFNVCVVYLLDSQF--LVDSTKFISGCLSALSAM--ISLEVPHINVL 171 (273)
T ss_pred cCCEEEEeCCCeeEEeec-ChhHHHHHHHHhcccCceeEEEEeccch--hhhHHHHHHHHHHHHHHH--HHhcCcchhhh
Confidence 457999999999984321 22344566777652 24678887532 1111122 22222221 12579999999
Q ss_pred eCCCCCCC
Q 014655 400 NKIDLPEM 407 (421)
Q Consensus 400 NK~Dl~~~ 407 (421)
+|+||...
T Consensus 172 sKMDLlk~ 179 (273)
T KOG1534|consen 172 SKMDLLKD 179 (273)
T ss_pred hHHHHhhh
Confidence 99999876
No 364
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.16 E-value=0.00049 Score=66.36 Aligned_cols=80 Identities=26% Similarity=0.348 Sum_probs=44.3
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCE---EEEEeeCCC-CCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRL---LVHVIDAAA-ENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radv---Il~VvD~s~-~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~ 402 (421)
..+.+.|.||..|-......+. ..++.+++-|. .+.++|+-- .+|..-+..++-.|.... ..+-|.|=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~-~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl--~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLN-KIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML--HMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHH-HHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH--hhcccchhhhhHh
Confidence 4689999999998543222233 33455555554 455555421 233222233322222211 1467899999999
Q ss_pred CCCCCCC
Q 014655 403 DLPEMYD 409 (421)
Q Consensus 403 Dl~~~~e 409 (421)
|+....+
T Consensus 174 Dl~~~yg 180 (290)
T KOG1533|consen 174 DLLKKYG 180 (290)
T ss_pred HHHHhhc
Confidence 9976544
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.14 E-value=0.0016 Score=64.33 Aligned_cols=73 Identities=16% Similarity=0.101 Sum_probs=41.3
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcc-----cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLR-----RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~-----radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK 401 (421)
..++|+||||..........--..+.+.++ .+|.+++|+|++. ..+.+.......+.. .+.-+|+||
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~------~~~g~IlTK 226 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV------GLTGIILTK 226 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC------CCCEEEEEc
Confidence 479999999976531110000112223322 2788999999974 233443333333221 246789999
Q ss_pred CCCCCC
Q 014655 402 IDLPEM 407 (421)
Q Consensus 402 ~Dl~~~ 407 (421)
+|....
T Consensus 227 lDe~~~ 232 (272)
T TIGR00064 227 LDGTAK 232 (272)
T ss_pred cCCCCC
Confidence 998654
No 366
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=7e-05 Score=76.90 Aligned_cols=124 Identities=21% Similarity=0.185 Sum_probs=73.7
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCc---cC-CCCeee------eccceeecCCCCCCccccccceEEecCCccccc
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDI---AD-YPFTTL------MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~-~pfTTl------~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~ 340 (421)
.+.+|+++-.-.|||||...+|.--.-.+ .+ -.+.|. .-..|+......+..+|-+.++.++||||+.+.
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 34578999999999999988864211111 00 001111 001111100111112244678999999999876
Q ss_pred ccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 341 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 341 a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.-+ .-+.++--|.++.|+|++.....+.+..|+ .-.. .+.|.++.+||||...+
T Consensus 116 ~le-------verclrvldgavav~dasagve~qtltvwr-qadk-----~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 116 RLE-------VERCLRVLDGAVAVFDASAGVEAQTLTVWR-QADK-----FKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEE-------HHHHHHHhcCeEEEEeccCCcccceeeeeh-hccc-----cCCchhhhhhhhhhhhh
Confidence 322 234455558899999999876555544333 3333 57899999999998765
No 367
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.06 E-value=0.0017 Score=65.70 Aligned_cols=71 Identities=25% Similarity=0.251 Sum_probs=43.4
Q ss_pred cceEEecCCcccccccccCchhHHHHH-----hcccCCEEEEEeeCCCCCChh--hHHHHHHHHHhcCCCCCCCCEEEEE
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLR-----HLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVL 399 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~-----~i~radvIl~VvD~s~~~~~~--~~~~l~~eL~~~~~~l~~kP~IIVl 399 (421)
....+|.|-|+-+.. .+...|+. ..-+-|.++-|||+.+-.... ..+...+.+.. .=+||+
T Consensus 85 ~D~ivIEtTGlA~P~----pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~--------AD~ivl 152 (323)
T COG0523 85 PDRLVIETTGLADPA----PVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF--------ADVIVL 152 (323)
T ss_pred CCEEEEeCCCCCCCH----HHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh--------CcEEEE
Confidence 357889999987642 23334433 123457899999998632211 12333334432 238999
Q ss_pred eCCCCCCCCC
Q 014655 400 NKIDLPEMYD 409 (421)
Q Consensus 400 NK~Dl~~~~e 409 (421)
||.|+.++++
T Consensus 153 NK~Dlv~~~~ 162 (323)
T COG0523 153 NKTDLVDAEE 162 (323)
T ss_pred ecccCCCHHH
Confidence 9999998775
No 368
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.05 E-value=0.0018 Score=60.88 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|++++|||||++++.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999998764
No 369
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0016 Score=60.84 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=76.3
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCee---eeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT---LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT---l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
...++.++|.-+.||+|++++....+... .|+-|+ ..|....-+.. ..++.+|||.|..... ++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~-~y~at~Gv~~~pl~f~tn~g--------~irf~~wdtagqEk~g----gl 75 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEK-TYPATLGVEVHPLLFDTNRG--------QIRFNVWDTAGQEKKG----GL 75 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhccccee-cccCcceeEEeeeeeecccC--------cEEEEeeecccceeec----cc
Confidence 34678999999999999999987655322 222222 11111111100 1478999999976532 11
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.. -.+|. ..+.++++|+....+......|.+.+.... .+.|++++.||.|....+
T Consensus 76 rd--gyyI~-~qcAiimFdVtsr~t~~n~~rwhrd~~rv~---~NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 76 RD--GYYIQ-GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR---ENIPIVLCGNKVDIKARK 130 (216)
T ss_pred cc--ccEEe-cceeEEEeeeeehhhhhcchHHHHHHHHHh---cCCCeeeeccceeccccc
Confidence 11 12333 346678899998877777777777776654 358999999999987654
No 370
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0016 Score=65.91 Aligned_cols=127 Identities=23% Similarity=0.278 Sum_probs=77.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-----------c--cC---CCCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-----------I--AD---YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-----------i--a~---~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG 336 (421)
.+|+-+|...-|||||-.+|+..-.. | ++ --+.|+ +..++.|... ...+.=+|.||
T Consensus 55 vNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITI--n~aHveYeTa------~RhYaH~DCPG 126 (449)
T KOG0460|consen 55 VNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITI--NAAHVEYETA------KRHYAHTDCPG 126 (449)
T ss_pred ccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceE--eeeeeeeecc------ccccccCCCCc
Confidence 37899999999999999999863211 1 11 112232 2234444322 23577899999
Q ss_pred ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCC-CCEEEEEeCCCCCCCCCch----
Q 014655 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLE-RPFIVVLNKIDLPEMYDDS---- 411 (421)
Q Consensus 337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~-kP~IIVlNK~Dl~~~~e~~---- 411 (421)
+.+. .....--...-|..|+||.+++....+.-+.|+-. ++ .. ..+++.+||.|++++.+.+
T Consensus 127 HADY-------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLA-rQ-----VGV~~ivvfiNKvD~V~d~e~leLVE 193 (449)
T KOG0460|consen 127 HADY-------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLA-RQ-----VGVKHIVVFINKVDLVDDPEMLELVE 193 (449)
T ss_pred hHHH-------HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHH-HH-----cCCceEEEEEecccccCCHHHHHHHH
Confidence 8653 11122222556899999999987665555444322 22 23 4478889999999766543
Q ss_pred ----HHHHhCCCC
Q 014655 412 ----SSRQGIGFN 420 (421)
Q Consensus 412 ----~~l~~lGl~ 420 (421)
+.|..+|++
T Consensus 194 mE~RElLse~gf~ 206 (449)
T KOG0460|consen 194 MEIRELLSEFGFD 206 (449)
T ss_pred HHHHHHHHHcCCC
Confidence 445566654
No 371
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.03 E-value=0.0004 Score=65.32 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=40.6
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++++||||......+...--..+++.+ ..+-+++|+|++.. .++++.+....+.+ .+-=+|++|.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~--~~~~~~~~~~~~~~------~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMG--QEDLEQALAFYEAF------GIDGLILTKLDETA 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGG--GHHHHHHHHHHHHS------STCEEEEESTTSSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccC--hHHHHHHHHHhhcc------cCceEEEEeecCCC
Confidence 36999999997654221111122344444 46788999999753 33444343333332 12356799999765
Q ss_pred C
Q 014655 407 M 407 (421)
Q Consensus 407 ~ 407 (421)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 4
No 372
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.002 Score=66.89 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=40.3
Q ss_pred cceEEecCCcccccccccCchhHHHHHhc--ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i--~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..++|+||||..... ..+.....+.+ ...+.+++|+|++.. . ..+.+.++.|.. . ..-=+|+||+|.
T Consensus 321 ~DvVLIDTaGRs~kd---~~lm~EL~~~lk~~~PdevlLVLsATtk--~---~d~~~i~~~F~~--~-~idglI~TKLDE 389 (436)
T PRK11889 321 VDYILIDTAGKNYRA---SETVEEMIETMGQVEPDYICLTLSASMK--S---KDMIEIITNFKD--I-HIDGIVFTKFDE 389 (436)
T ss_pred CCEEEEeCccccCcC---HHHHHHHHHHHhhcCCCeEEEEECCccC--h---HHHHHHHHHhcC--C-CCCEEEEEcccC
Confidence 479999999975432 22222222222 234678889998642 1 233445555553 1 234678999997
Q ss_pred CCC
Q 014655 405 PEM 407 (421)
Q Consensus 405 ~~~ 407 (421)
...
T Consensus 390 T~k 392 (436)
T PRK11889 390 TAS 392 (436)
T ss_pred CCC
Confidence 654
No 373
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.01 E-value=0.0015 Score=60.29 Aligned_cols=52 Identities=27% Similarity=0.160 Sum_probs=34.7
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.....++++|++++|+|+++...... ..+ .. ...++|+++|+||+|+.....
T Consensus 27 ~l~~~~~~ad~il~VvD~~~~~~~~~-~~l----~~---~~~~~~~ilV~NK~Dl~~~~~ 78 (190)
T cd01855 27 LLSSISPKKALVVHVVDIFDFPGSLI-PRL----RL---FGGNNPVILVGNKIDLLPKDK 78 (190)
T ss_pred HHHhcccCCcEEEEEEECccCCCccc-hhH----HH---hcCCCcEEEEEEchhcCCCCC
Confidence 34556789999999999987542211 112 11 114689999999999975443
No 374
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0015 Score=67.44 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.7
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-.++|+|++||||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999753
No 375
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=96.97 E-value=0.00093 Score=60.83 Aligned_cols=51 Identities=29% Similarity=0.378 Sum_probs=35.8
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
....+.++.||++++|+|++.+....+.. +.+.+ .++|.++|+||+|+.+.
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~-i~~~~-------~~k~~ilVlNK~Dl~~~ 61 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPL-LEKIL-------GNKPRIIVLNKADLADP 61 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChh-hHhHh-------cCCCEEEEEehhhcCCh
Confidence 34567889999999999998654333222 22222 25799999999999754
No 376
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.94 E-value=0.00091 Score=67.57 Aligned_cols=70 Identities=11% Similarity=0.211 Sum_probs=40.1
Q ss_pred cceEEecCCcccccccccCchhHHHH-----HhcccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFL-----RHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVLN 400 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL-----~~i~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVlN 400 (421)
...+++.|.|+.+.. .+...|+ ...-+.+.++.|+|+..-.. ..........+.. .-+||+|
T Consensus 91 ~d~IvIEttG~a~p~----~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~--------AD~Ivln 158 (318)
T PRK11537 91 FDRLVIECTGMADPG----PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY--------ADRILLT 158 (318)
T ss_pred CCEEEEECCCccCHH----HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh--------CCEEEEe
Confidence 457889999986532 2233332 12224588999999975221 1112222333332 2388999
Q ss_pred CCCCCCCC
Q 014655 401 KIDLPEMY 408 (421)
Q Consensus 401 K~Dl~~~~ 408 (421)
|+|+..+.
T Consensus 159 K~Dl~~~~ 166 (318)
T PRK11537 159 KTDVAGEA 166 (318)
T ss_pred ccccCCHH
Confidence 99998754
No 377
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.00094 Score=70.27 Aligned_cols=124 Identities=19% Similarity=0.218 Sum_probs=75.5
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCcc-C----CCCe--eeeccceeecCCCC----------------CC-ccc
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIA-D----YPFT--TLMPNLGRLDGDPT----------------LG-AEK 324 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-~----~pfT--Tl~p~~g~v~~~~~----------------~~-~~~ 324 (421)
-+.+.++.++-+..-|||||..+|....--|+ . .-|| ..+.+...+..... .. ...
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 34566777888889999999999875432221 1 1122 12222222211000 00 000
Q ss_pred cccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 325 ~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
-+.-|.+||.||+.+..++ .-..++-+|..+.|||+-+..-.+....|.+.+... -+| ++|+||+|.
T Consensus 96 ~~FLiNLIDSPGHVDFSSE-------VTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER-----IkP-vlv~NK~DR 162 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSE-------VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER-----IKP-VLVMNKMDR 162 (842)
T ss_pred cceeEEeccCCCcccchhh-------hhheeEeccCcEEEEEccCceEechHHHHHHHHHhh-----ccc-eEEeehhhH
Confidence 1124889999999987554 345678889999999998876555556677766541 244 678999996
Q ss_pred C
Q 014655 405 P 405 (421)
Q Consensus 405 ~ 405 (421)
.
T Consensus 163 A 163 (842)
T KOG0469|consen 163 A 163 (842)
T ss_pred H
Confidence 3
No 378
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.85 E-value=0.0012 Score=65.01 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=40.5
Q ss_pred CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
||++.. ..+.+.+.++.||++++|+|+..+...++. .+.+.+ .++|+++|+||+|+.+.
T Consensus 5 pgHm~k------~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-------~~kp~IiVlNK~DL~~~ 63 (276)
T TIGR03596 5 PGHMAK------ARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-------GNKPRLIVLNKADLADP 63 (276)
T ss_pred hHHHHH------HHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-------CCCCEEEEEEccccCCH
Confidence 676643 234566788999999999999865443332 232222 25899999999999754
No 379
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.83 E-value=0.0036 Score=55.23 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=59.9
Q ss_pred cCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhccc
Q 014655 278 VGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRR 357 (421)
Q Consensus 278 VG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~r 357 (421)
-+..++||||+--.+...-.. ....++ .++.++... .+...++|+|+|+.... ..+..+..
T Consensus 6 ~~kgg~gkt~~~~~~a~~~~~---~~~~~~-----~vd~D~~~~--~~~yd~VIiD~p~~~~~---------~~~~~l~~ 66 (139)
T cd02038 6 SGKGGVGKTNISANLALALAK---LGKRVL-----LLDADLGLA--NLDYDYIIIDTGAGISD---------NVLDFFLA 66 (139)
T ss_pred cCCCCCcHHHHHHHHHHHHHH---CCCcEE-----EEECCCCCC--CCCCCEEEEECCCCCCH---------HHHHHHHh
Confidence 478899999997776542110 011111 111111100 12247999999985432 23456788
Q ss_pred CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 358 TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 358 advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
||.+++|++.+... ..+...+.+++.... ...++.+|+|+++..
T Consensus 67 aD~vviv~~~~~~s-~~~~~~~l~~l~~~~---~~~~~~lVvN~~~~~ 110 (139)
T cd02038 67 ADEVIVVTTPEPTS-ITDAYALIKKLAKQL---RVLNFRVVVNRAESP 110 (139)
T ss_pred CCeEEEEcCCChhH-HHHHHHHHHHHHHhc---CCCCEEEEEeCCCCH
Confidence 99999999986433 333333444444321 345678999999743
No 380
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0015 Score=68.32 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=40.6
Q ss_pred cceEEecCCcccccccccCchhHHHHHhccc--CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRR--TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~r--advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..++++||||..........--..+++.+.. ..-.++|+|++... ..+.+.+..|.. . .+-=+|+||.|-
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-----~~~~~~~~~f~~--~-~~~glIlTKLDE 371 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-----HHTLTVLKAYES--L-NYRRILLTKLDE 371 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-----HHHHHHHHHhcC--C-CCCEEEEEcccC
Confidence 4789999999864322111111233333321 33578899987532 234445555532 1 234678999997
Q ss_pred CCC
Q 014655 405 PEM 407 (421)
Q Consensus 405 ~~~ 407 (421)
...
T Consensus 372 t~~ 374 (432)
T PRK12724 372 ADF 374 (432)
T ss_pred CCC
Confidence 543
No 381
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0022 Score=68.81 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.9
Q ss_pred hceecccCCCCCChhHHHHHHhc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.-.|+|+|.+|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 382
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0023 Score=66.16 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.8
Q ss_pred hceecccCCCCCChhHHHHHHhc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..-|+|+|++|+||||++..|..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34579999999999999999864
No 383
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.0029 Score=66.44 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=38.8
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++|+||||...........-..+++......-+++|++++.. ..+ +.+.+..|.. . .+.-+|+||+|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~---l~~~~~~f~~--~-~~~~vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YED---LKDIYKHFSR--L-PLDGLIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHH---HHHHHHHhCC--C-CCCEEEEecccccc
Confidence 47999999998543211111112233322123456778887642 223 4444455542 1 12368899999865
Q ss_pred C
Q 014655 407 M 407 (421)
Q Consensus 407 ~ 407 (421)
.
T Consensus 372 ~ 372 (424)
T PRK05703 372 S 372 (424)
T ss_pred c
Confidence 4
No 384
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0029 Score=64.70 Aligned_cols=125 Identities=24% Similarity=0.231 Sum_probs=71.5
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccC--------------CCCeee---eccce------eecCCCCCCcc----ccc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIAD--------------YPFTTL---MPNLG------RLDGDPTLGAE----KYS 326 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~--------------~pfTTl---~p~~g------~v~~~~~~~~~----~~~ 326 (421)
+|+++|--.+|||||+--|+..+..-.+ ..+.|. ...+| .+++...+..+ .-+
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SS 248 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSS 248 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhc
Confidence 6899999999999999999865321100 011111 01111 12222111100 012
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.-++++|..|..+..+-. .+..-. ...|..++|+.+.....+...+.|--.+ . ++.|++++++|+|+.+
T Consensus 249 KlvTfiDLAGh~kY~~TT---i~gLtg--Y~Ph~A~LvVsA~~Gi~~tTrEHLgl~~-A-----L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTT---IHGLTG--YTPHFACLVVSADRGITWTTREHLGLIA-A-----LNIPFFVLVTKMDLVD 317 (591)
T ss_pred ceEEEeecccchhhheee---eeeccc--CCCceEEEEEEcCCCCccccHHHHHHHH-H-----hCCCeEEEEEeecccc
Confidence 348999999986542210 000000 2247788899988877766655443333 2 5799999999999998
Q ss_pred CCC
Q 014655 407 MYD 409 (421)
Q Consensus 407 ~~e 409 (421)
.+.
T Consensus 318 ~~~ 320 (591)
T KOG1143|consen 318 RQG 320 (591)
T ss_pred chh
Confidence 753
No 385
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.71 E-value=0.0021 Score=57.51 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=30.3
Q ss_pred CEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 359 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 359 dvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
|++++|+|+.++....+.......+.. .++|+++|+||+|+.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~-----~~~p~IiVlNK~Dl~~~~ 45 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE-----KGKKLILVLNKADLVPKE 45 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc-----CCCCEEEEEechhcCCHH
Confidence 789999999876544332211123322 468999999999997643
No 386
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.0052 Score=68.57 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=40.8
Q ss_pred cceEEecCCcccccccccCchhHH--HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~--fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..++||||||..... ..+... .+......+-+++|+|++.. .+.+.+.++.|.......+-=+|+||.|.
T Consensus 264 ~D~VLIDTAGRs~~d---~~l~eel~~l~~~~~p~e~~LVLsAt~~-----~~~l~~i~~~f~~~~~~~i~glIlTKLDE 335 (767)
T PRK14723 264 KHLVLIDTVGMSQRD---RNVSEQIAMLCGVGRPVRRLLLLNAASH-----GDTLNEVVHAYRHGAGEDVDGCIITKLDE 335 (767)
T ss_pred CCEEEEeCCCCCccC---HHHHHHHHHHhccCCCCeEEEEECCCCc-----HHHHHHHHHHHhhcccCCCCEEEEeccCC
Confidence 469999999965432 112221 11222345667899998742 23444555555421111234678999997
Q ss_pred CCC
Q 014655 405 PEM 407 (421)
Q Consensus 405 ~~~ 407 (421)
...
T Consensus 336 t~~ 338 (767)
T PRK14723 336 ATH 338 (767)
T ss_pred CCC
Confidence 653
No 387
>PRK01889 GTPase RsgA; Reviewed
Probab=96.65 E-value=0.0014 Score=67.27 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=23.4
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++..-.++|+|.+|+|||||+|+|.+..
T Consensus 192 L~~g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 192 LSGGKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred hhcCCEEEEECCCCccHHHHHHHHHHhc
Confidence 3334479999999999999999999754
No 388
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.65 E-value=0.0031 Score=64.72 Aligned_cols=126 Identities=25% Similarity=0.171 Sum_probs=73.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCC--------------CCeeeeccceeecCCCCC---------Cccc----
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY--------------PFTTLMPNLGRLDGDPTL---------GAEK---- 324 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~--------------pfTTl~p~~g~v~~~~~~---------~~~~---- 324 (421)
-..|+..|.-++|||||+-+|+-.++.-.+- .+-|.+..++.+-++... ..+.
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence 3578999999999999999987654432110 011112222222221100 0000
Q ss_pred --cccceEEecCCcccccccccCchhHHHHHhc--ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 014655 325 --YSSEATLADLPGLIEGAHLGKGLGRNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 400 (421)
Q Consensus 325 --~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i--~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlN 400 (421)
-+.=+.++||-|+... -+..++-+ +..|..++|+-+.+..+...-+.+--.+. .+.|+++|++
T Consensus 197 ~~aDklVsfVDtvGHEpw-------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a------~~lPviVvvT 263 (527)
T COG5258 197 KRADKLVSFVDTVGHEPW-------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA------MELPVIVVVT 263 (527)
T ss_pred hhcccEEEEEecCCccHH-------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh------hcCCEEEEEE
Confidence 0123789999997432 12223333 56799999999887654444333333333 4689999999
Q ss_pred CCCCCCCCCc
Q 014655 401 KIDLPEMYDD 410 (421)
Q Consensus 401 K~Dl~~~~e~ 410 (421)
|+|+.+++..
T Consensus 264 K~D~~~ddr~ 273 (527)
T COG5258 264 KIDMVPDDRF 273 (527)
T ss_pred ecccCcHHHH
Confidence 9999887643
No 389
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.0032 Score=72.93 Aligned_cols=124 Identities=23% Similarity=0.239 Sum_probs=68.6
Q ss_pred ecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc----ccCchh
Q 014655 275 VGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH----LGKGLG 348 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~----~~~gl~ 348 (421)
-.+||+||+||||++.----.-+-. .....+. .+....|+ -++.++-+++||.|-.-..+ .++...
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~-~~gT~~cd-------wwf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLA-GPGTRNCD-------WWFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhcccccc-CCCCcccC-------cccccceEEEcCCcceecccCcchhhHHHH
Confidence 4789999999999987643322211 1111111 11111222 13567889999999543221 233344
Q ss_pred HHHHHhc------ccCCEEEEEeeCCCC---CChhh---HHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCC
Q 014655 349 RNFLRHL------RRTRLLVHVIDAAAE---NPVND---YRTVKEELRMYNPDY-LERPFIVVLNKIDLPE 406 (421)
Q Consensus 349 ~~fL~~i------~radvIl~VvD~s~~---~~~~~---~~~l~~eL~~~~~~l-~~kP~IIVlNK~Dl~~ 406 (421)
..||..+ +-.+.||+.+|+++- +..+. ...|+.-|++....+ ...|+.+++||+|+..
T Consensus 200 ~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 200 LGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 4454443 336889999998762 22222 222333233222111 4589999999999976
No 390
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.64 E-value=0.0039 Score=62.87 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=48.1
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC-------hhhHHHHHHHHHhc--CCCCCCCCEEE
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMY--NPDYLERPFIV 397 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~-------~~~~~~l~~eL~~~--~~~l~~kP~II 397 (421)
..+.++|+.|... ....|..+.+.+++|+||+|+++.+. ...+..-++.++.. ++.+.+.|+++
T Consensus 161 ~~~~~~DvgGq~~-------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill 233 (317)
T cd00066 161 LKFRMFDVGGQRS-------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIIL 233 (317)
T ss_pred eEEEEECCCCCcc-------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEE
Confidence 4689999999633 35567778899999999999987421 11111111122211 13445799999
Q ss_pred EEeCCCCCC
Q 014655 398 VLNKIDLPE 406 (421)
Q Consensus 398 VlNK~Dl~~ 406 (421)
++||.|+..
T Consensus 234 ~~NK~D~f~ 242 (317)
T cd00066 234 FLNKKDLFE 242 (317)
T ss_pred EccChHHHH
Confidence 999999754
No 391
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.56 E-value=0.0098 Score=47.14 Aligned_cols=72 Identities=24% Similarity=0.190 Sum_probs=46.3
Q ss_pred ecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHh
Q 014655 275 VGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH 354 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~ 354 (421)
+++.|..++||||+...|...-.. ..+. + ..+ +.+.++|+|+....... + ....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~--v-----~~~------------~d~iivD~~~~~~~~~~---~---~~~~ 55 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKR--V-----LLI------------DDYVLIDTPPGLGLLVL---L---CLLA 55 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCe--E-----EEE------------CCEEEEeCCCCccchhh---h---hhhh
Confidence 567799999999999998754211 1111 1 111 14799999997654210 0 1355
Q ss_pred cccCCEEEEEeeCCCCCC
Q 014655 355 LRRTRLLVHVIDAAAENP 372 (421)
Q Consensus 355 i~radvIl~VvD~s~~~~ 372 (421)
+..+|.++++++......
T Consensus 56 ~~~~~~vi~v~~~~~~~~ 73 (99)
T cd01983 56 LLAADLVIIVTTPEALAV 73 (99)
T ss_pred hhhCCEEEEecCCchhhH
Confidence 678899999999876443
No 392
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.56 E-value=0.0054 Score=52.04 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=18.9
Q ss_pred ecccCCCCCChhHHHHHHhcC
Q 014655 275 VGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~ 295 (421)
|.|.|+||+|||+|++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999864
No 393
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.54 E-value=0.0063 Score=62.09 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=48.1
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC----------hhhHHHHHHHHHhcCCCCCCCCEE
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP----------VNDYRTVKEELRMYNPDYLERPFI 396 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~----------~~~~~~l~~eL~~~~~~l~~kP~I 396 (421)
..+.++|+.|... ....|..+.+.+++|+||+|+++.+. ..+...+.+.+-. ++.+.+.|++
T Consensus 184 ~~~~~~DvgGqr~-------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~-~~~~~~~pii 255 (342)
T smart00275 184 LFFRMFDVGGQRS-------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN-SRWFANTSII 255 (342)
T ss_pred eEEEEEecCCchh-------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc-CccccCCcEE
Confidence 3589999999632 34567777899999999999997321 1111112222221 2345679999
Q ss_pred EEEeCCCCCC
Q 014655 397 VVLNKIDLPE 406 (421)
Q Consensus 397 IVlNK~Dl~~ 406 (421)
+++||.|+..
T Consensus 256 l~~NK~D~~~ 265 (342)
T smart00275 256 LFLNKIDLFE 265 (342)
T ss_pred EEEecHHhHH
Confidence 9999999854
No 394
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.54 E-value=0.015 Score=49.04 Aligned_cols=100 Identities=20% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccC
Q 014655 279 GLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRT 358 (421)
Q Consensus 279 G~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~ra 358 (421)
+..++||||+...|..+-.....+ .+ ..++.++. .+..++++|+|+.... .....+..|
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~--~~-----~l~d~d~~-----~~~D~IIiDtpp~~~~---------~~~~~l~~a 65 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGR--RV-----LLVDLDLQ-----FGDDYVVVDLGRSLDE---------VSLAALDQA 65 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCC--cE-----EEEECCCC-----CCCCEEEEeCCCCcCH---------HHHHHHHHc
Confidence 567999999888776432111011 11 12222221 1236899999996542 234567889
Q ss_pred CEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655 359 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (421)
Q Consensus 359 dvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK 401 (421)
|.+++|++.+.. .......+.+.++..... ....+.+|+|+
T Consensus 66 D~vlvvv~~~~~-s~~~~~~~~~~l~~~~~~-~~~~~~lVvNr 106 (106)
T cd03111 66 DRVFLVTQQDLP-SIRNAKRLLELLRVLDYS-LPAKIELVLNR 106 (106)
T ss_pred CeEEEEecCChH-HHHHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence 999999988653 344455555666554321 13457788885
No 395
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.53 E-value=0.026 Score=50.69 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=43.9
Q ss_pred ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.++|+|+|+-... .....+..||.+++|++.+... ......+.+.++..+ .....+|+|++|-..
T Consensus 64 d~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~~~~~~----~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER---------GFITAIAPADEALLVTTPEISS-LRDADRVKGLLEALG----IKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH---------HHHHHHHhCCcEEEEeCCCcch-HHHHHHHHHHHHHcC----CceEEEEEeCCcccc
Confidence 6999999985432 2345567899999999987543 444444555665422 234678999998654
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.0044 Score=64.88 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=39.7
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcc---cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLR---RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~---radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
..+.++||+|...... .+. .-+..+. ...-.++|+|++.. ...+.+.+..|.. -..-=+|+||.|
T Consensus 270 ~d~VLIDTaGrsqrd~---~~~-~~l~~l~~~~~~~~~~LVl~at~~-----~~~~~~~~~~f~~---~~~~~~I~TKlD 337 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQ---MLA-EQIAMLSQCGTQVKHLLLLNATSS-----GDTLDEVISAYQG---HGIHGCIITKVD 337 (420)
T ss_pred CCEEEecCCCCCcchH---HHH-HHHHHHhccCCCceEEEEEcCCCC-----HHHHHHHHHHhcC---CCCCEEEEEeee
Confidence 4689999999765311 111 1223332 23457789998742 2334455566642 123467899999
Q ss_pred CCCC
Q 014655 404 LPEM 407 (421)
Q Consensus 404 l~~~ 407 (421)
....
T Consensus 338 Et~~ 341 (420)
T PRK14721 338 EAAS 341 (420)
T ss_pred CCCC
Confidence 7653
No 397
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.49 E-value=0.0027 Score=63.05 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=41.9
Q ss_pred cCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 333 DtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
--||++..+ .+...+.++.||++|+|+|+..+...++ ..+.+.+ .++|+++|+||+|+.+.
T Consensus 6 wfpgHm~k~------~~~l~~~l~~aDvIL~VvDar~p~~~~~-~~l~~~~-------~~kp~iiVlNK~DL~~~ 66 (287)
T PRK09563 6 WFPGHMAKA------RREIKENLKLVDVVIEVLDARIPLSSEN-PMIDKII-------GNKPRLLILNKSDLADP 66 (287)
T ss_pred CcHHHHHHH------HHHHHHHhhhCCEEEEEEECCCCCCCCC-hhHHHHh-------CCCCEEEEEEchhcCCH
Confidence 457876542 3456788899999999999976544333 2222222 25899999999999754
No 398
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.46 E-value=0.0019 Score=60.73 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=20.8
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+..|.+.|+|+||||+|+-.++..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~ 36 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRA 36 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHH
Confidence 468999999999999999987653
No 399
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.44 E-value=0.0033 Score=57.89 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=30.7
Q ss_pred CEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 359 RLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 359 dvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
|++++|+|+..+....+ ..+.+.+.. ...++|+|+|+||+|+.+...
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l---~~~~kp~IlVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQ---AGGNKKLVLVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHh---ccCCCCEEEEEehhhcCCHHH
Confidence 78999999987543322 223333211 113589999999999986544
No 400
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.39 E-value=0.0072 Score=59.76 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=41.1
Q ss_pred cceEEecCCcccccccccCchhH---HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGR---NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~---~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
..+.++||||..... ..+.. .+++.. ..+.+++|+|++.. . ..+.+.++.|.. -.+-=+|+||.|
T Consensus 155 ~D~ViIDt~Gr~~~~---~~~l~el~~~~~~~-~~~~~~LVl~a~~~--~---~d~~~~~~~f~~---~~~~~~I~TKlD 222 (270)
T PRK06731 155 VDYILIDTAGKNYRA---SETVEEMIETMGQV-EPDYICLTLSASMK--S---KDMIEIITNFKD---IHIDGIVFTKFD 222 (270)
T ss_pred CCEEEEECCCCCcCC---HHHHHHHHHHHhhh-CCCeEEEEEcCccC--H---HHHHHHHHHhCC---CCCCEEEEEeec
Confidence 478999999976431 12222 233332 34678999998742 1 234445566653 233467899999
Q ss_pred CCCC
Q 014655 404 LPEM 407 (421)
Q Consensus 404 l~~~ 407 (421)
....
T Consensus 223 et~~ 226 (270)
T PRK06731 223 ETAS 226 (270)
T ss_pred CCCC
Confidence 7653
No 401
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.37 E-value=0.0092 Score=61.86 Aligned_cols=128 Identities=17% Similarity=0.206 Sum_probs=65.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCC--Cc-cCCCCeeeecc-ceeec---------CCCC---CCcc--------cccc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKP--DI-ADYPFTTLMPN-LGRLD---------GDPT---LGAE--------KYSS 327 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~--~i-a~~pfTTl~p~-~g~v~---------~~~~---~~~~--------~~~~ 327 (421)
..-|+|||++||||||-|..|...-. .. ....+-|+|.. +|-++ ..|. .... .-..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 34589999999999999998865322 00 12223333321 11000 0000 0000 0124
Q ss_pred ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++++||.|.-..+.+...--..|.+.. ...-..+|++++.. .+.+.+.+..|.. ... -=+++||+|....
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K-----~~dlkei~~~f~~--~~i-~~~I~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATTK-----YEDLKEIIKQFSL--FPI-DGLIFTKLDETTS 353 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCcc-----hHHHHHHHHHhcc--CCc-ceeEEEcccccCc
Confidence 6999999997543221111112233333 33445667777642 3445566666643 222 2567999997654
Q ss_pred C
Q 014655 408 Y 408 (421)
Q Consensus 408 ~ 408 (421)
-
T Consensus 354 ~ 354 (407)
T COG1419 354 L 354 (407)
T ss_pred h
Confidence 3
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.36 E-value=0.0098 Score=62.68 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=39.7
Q ss_pred cceEEecCCcccccccccCchhHH--HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~--fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..++|+||||.... +..+-.. .+..+..+|.+++|+|++.. .+.+ +..+.|.... ...-+|+||+|.
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av----~~a~~F~~~l--~i~gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAK----NQAKAFHEAV--GIGGIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHHHhcccceeEEEecccc--HHHH----HHHHHHHhcC--CCCEEEEecccC
Confidence 37999999997543 1112111 12334567899999998763 2222 2334443211 234678999996
Q ss_pred CC
Q 014655 405 PE 406 (421)
Q Consensus 405 ~~ 406 (421)
..
T Consensus 245 ~a 246 (437)
T PRK00771 245 TA 246 (437)
T ss_pred CC
Confidence 53
No 403
>PRK14974 cell division protein FtsY; Provisional
Probab=96.35 E-value=0.013 Score=59.64 Aligned_cols=71 Identities=25% Similarity=0.315 Sum_probs=38.8
Q ss_pred cceEEecCCccccccc-ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 327 SEATLADLPGLIEGAH-LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~-~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
..++++||+|...... .-..+ ..+.+ .-..|.+++|+|+.... ...+.. ..|.. .-..--+|+||+|..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL-~~i~~-~~~pd~~iLVl~a~~g~--d~~~~a----~~f~~--~~~~~giIlTKlD~~ 292 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDEL-KKIVR-VTKPDLVIFVGDALAGN--DAVEQA----REFNE--AVGIDGVILTKVDAD 292 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHH-HHHHH-hhCCceEEEeeccccch--hHHHHH----HHHHh--cCCCCEEEEeeecCC
Confidence 4699999999875311 11111 11212 22468889999997532 222222 22221 113357889999986
Q ss_pred CC
Q 014655 406 EM 407 (421)
Q Consensus 406 ~~ 407 (421)
..
T Consensus 293 ~~ 294 (336)
T PRK14974 293 AK 294 (336)
T ss_pred CC
Confidence 53
No 404
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.33 E-value=0.0099 Score=57.75 Aligned_cols=50 Identities=24% Similarity=0.170 Sum_probs=37.4
Q ss_pred hcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+..+|.+++|+|+.++. ....+..++..++. .+.|.++|+||+||.+..
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~~ 83 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDDE 83 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCCH
Confidence 467899999999999765 55555555554443 468999999999997543
No 405
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.33 E-value=0.0059 Score=55.50 Aligned_cols=41 Identities=29% Similarity=0.420 Sum_probs=30.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceee
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL 314 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v 314 (421)
-|+|+|+++||||||++.|.+..+.+ .....+|..|..+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~ 44 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEV 44 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCc
Confidence 47899999999999999999865443 333456666655543
No 406
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.0083 Score=58.31 Aligned_cols=122 Identities=19% Similarity=0.226 Sum_probs=68.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
++|.|+|.--+||||+-.-....- |...-+.-.|..+..-++... -..+.+||.||.++..... ..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~s--------finf~v~dfPGQ~~~Fd~s----~D~ 95 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNS--------FINFQVWDFPGQMDFFDPS----FDY 95 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhh--------hcceEEeecCCccccCCCc----cCH
Confidence 679999999999999887654321 111111111111111111110 0358999999998753221 123
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHH-hcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELR-MYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~-~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..-.+.+.+++||||+.+. ..+.+..|...+. .|.. ..+..+=+.+-|.|-...+
T Consensus 96 e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykv-Np~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 96 EMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKV-NPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred HHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeec-CCCceEEEEEEeccCCchh
Confidence 3445788999999998653 2333333332222 2321 1345677788999976554
No 407
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.009 Score=62.03 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=40.1
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++++||||........-.-...+++.+..-.-+++|+|++.. ..+ +.+.+..|.. -.+-=+|+||.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~---~~~~~~~~~~---~~~~~~I~TKlDet~ 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSD---VKEIFHQFSP---FSYKTVIFTKLDETT 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHH---HHHHHHHhcC---CCCCEEEEEeccCCC
Confidence 47999999997643111000012233333322257899999864 223 3355555532 123467899999754
Q ss_pred C
Q 014655 407 M 407 (421)
Q Consensus 407 ~ 407 (421)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 3
No 408
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.26 E-value=0.025 Score=51.45 Aligned_cols=78 Identities=22% Similarity=0.247 Sum_probs=52.2
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++|+|||+.... ..+..+..||.+++|+..+.. ...+...+.+.++.+ +.|+.+|+||+|...
T Consensus 93 ~d~viiDtpp~~~~---------~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-----~~~~~vV~N~~~~~~ 157 (179)
T cd03110 93 AELIIIDGPPGIGC---------PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-----GIPVGVVINKYDLND 157 (179)
T ss_pred CCEEEEECcCCCcH---------HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-----CCCEEEEEeCCCCCc
Confidence 47999999975432 234556889999999998753 445555666666653 467889999999754
Q ss_pred CC--CchHHHHhCCC
Q 014655 407 MY--DDSSSRQGIGF 419 (421)
Q Consensus 407 ~~--e~~~~l~~lGl 419 (421)
.. +..+.++++|+
T Consensus 158 ~~~~~~~~~~~~~~~ 172 (179)
T cd03110 158 EIAEEIEDYCEEEGI 172 (179)
T ss_pred chHHHHHHHHHHcCC
Confidence 32 23344555554
No 409
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.15 E-value=0.016 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.123 Sum_probs=19.6
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+|.++|..++|||+|+.++...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 6899999999999999999543
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.13 E-value=0.009 Score=63.66 Aligned_cols=123 Identities=20% Similarity=0.206 Sum_probs=62.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC------CccCCCCeeeecc-------c---eeecCCCCCC--c---------ccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP------DIADYPFTTLMPN-------L---GRLDGDPTLG--A---------EKY 325 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~------~ia~~pfTTl~p~-------~---g~v~~~~~~~--~---------~~~ 325 (421)
--++|||++||||||++..|...-. .+. ..+.|+. + +.....+... . ..-
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~---LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVA---LLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEE---EEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 3589999999999999999875321 121 1111111 0 0000000000 0 001
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
...+.++||+|....... ......++.......-.++|+|++.. ...+.+.+..|.. ....-+|+||+|-.
T Consensus 334 d~d~VLIDTaGr~~~d~~-~~e~~~~l~~~~~p~e~~LVLdAt~~-----~~~l~~i~~~f~~---~~~~g~IlTKlDet 404 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRM-VSEQIAMLHGAGAPVKRLLLLNATSH-----GDTLNEVVQAYRG---PGLAGCILTKLDEA 404 (484)
T ss_pred CCCeEEeCCCCcChhhHH-HHHHHHHHhccCCCCeeEEEEeCCCc-----HHHHHHHHHHhcc---CCCCEEEEeCCCCc
Confidence 235899999996543111 00011122222212236788998743 2345556666653 22346679999975
Q ss_pred CC
Q 014655 406 EM 407 (421)
Q Consensus 406 ~~ 407 (421)
..
T Consensus 405 ~~ 406 (484)
T PRK06995 405 AS 406 (484)
T ss_pred cc
Confidence 43
No 411
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.10 E-value=0.019 Score=47.49 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=44.5
Q ss_pred ecccC-CCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 275 VGLVG-LPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 275 V~LVG-~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
|+++| ..++||||+...|...-.. ... ....++.++. ..++++|+|+.... .+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~-------~vl~~d~d~~-------~d~viiD~p~~~~~---------~~~~ 57 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGK-------RVLLIDLDPQ-------YDYIIIDTPPSLGL---------LTRN 57 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCC-------cEEEEeCCCC-------CCEEEEeCcCCCCH---------HHHH
Confidence 44555 6799999998877543211 111 1112222221 36899999996532 3446
Q ss_pred hcccCCEEEEEeeCCC
Q 014655 354 HLRRTRLLVHVIDAAA 369 (421)
Q Consensus 354 ~i~radvIl~VvD~s~ 369 (421)
.+..||.++++++.+.
T Consensus 58 ~l~~ad~viv~~~~~~ 73 (104)
T cd02042 58 ALAAADLVLIPVQPSP 73 (104)
T ss_pred HHHHCCEEEEeccCCH
Confidence 6788999999998764
No 412
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.00 E-value=0.0091 Score=52.73 Aligned_cols=40 Identities=30% Similarity=0.296 Sum_probs=29.4
Q ss_pred ecccCCCCCChhHHHHHHhcCCCC--ccCCCCeeeeccceee
Q 014655 275 VGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRL 314 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~~~--ia~~pfTTl~p~~g~v 314 (421)
|+|+|++++|||||++.|....+. ....+.||..|..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~ 43 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEV 43 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCcc
Confidence 678999999999999999976432 2344557777765554
No 413
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.98 E-value=0.013 Score=57.98 Aligned_cols=126 Identities=19% Similarity=0.230 Sum_probs=69.1
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCcc----CCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc-
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIA----DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG- 346 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia----~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g- 346 (421)
.++|..||.++-|||||+..|.+...... .+|..-+..+...+.- ....-+++|+||.|+-+.-.....
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqE------snvrlKLtiv~tvGfGDQinK~~Sy 115 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQE------SNVRLKLTIVDTVGFGDQINKEDSY 115 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhh------cCeeEEEEEEeecccccccCccccc
Confidence 46899999999999999999998764321 2222222222111111 112246899999998653211111
Q ss_pred ------hhHHHHH---------------hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 347 ------LGRNFLR---------------HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 347 ------l~~~fL~---------------~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
+...|-. |=.|.++++|.|..+... ...+..+ .++.++ ....+|-|+-|+|..
T Consensus 116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~-LKslDLv--tmk~Ld---skVNIIPvIAKaDti 189 (406)
T KOG3859|consen 116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHS-LKSLDLV--TMKKLD---SKVNIIPVIAKADTI 189 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcc-hhHHHHH--HHHHHh---hhhhhHHHHHHhhhh
Confidence 1112211 224678999999887533 3322211 112222 234566688888876
Q ss_pred CCCC
Q 014655 406 EMYD 409 (421)
Q Consensus 406 ~~~e 409 (421)
...+
T Consensus 190 sK~e 193 (406)
T KOG3859|consen 190 SKEE 193 (406)
T ss_pred hHHH
Confidence 5443
No 414
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.004 Score=62.19 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=47.2
Q ss_pred ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+.++|.||+.- +-...|.-..-.|+.+++|-++.+.|..+-...+..++.+. -+.++|+-||+||..+
T Consensus 126 HVSfVDCPGHDi-------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~----LkhiiilQNKiDli~e 194 (466)
T KOG0466|consen 126 HVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK----LKHIIILQNKIDLIKE 194 (466)
T ss_pred EEEeccCCchHH-------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh----hceEEEEechhhhhhH
Confidence 488999999742 11223333344577788887776555444433444444432 3678999999999987
Q ss_pred CCchHHH
Q 014655 408 YDDSSSR 414 (421)
Q Consensus 408 ~e~~~~l 414 (421)
.+..++.
T Consensus 195 ~~A~eq~ 201 (466)
T KOG0466|consen 195 SQALEQH 201 (466)
T ss_pred HHHHHHH
Confidence 6655543
No 415
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.96 E-value=0.012 Score=58.48 Aligned_cols=48 Identities=17% Similarity=0.031 Sum_probs=35.8
Q ss_pred cccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 355 LRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 355 i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+..+|++++|+|+.++. ....++.++..++. .++|.++|+||+|+.+.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-----~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-----AGIEPVIVLTKADLLDD 124 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEEHHHCCCh
Confidence 57899999999998765 44444444444443 46899999999999765
No 416
>PRK12289 GTPase RsgA; Reviewed
Probab=95.92 E-value=0.014 Score=59.84 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=34.1
Q ss_pred hcccCCEEEEEeeCCCCCChh-hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVN-DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~-~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+..+|.+++|+|+.++.... .+..++..... .++|+++|+||+||....
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-----~~ip~ILVlNK~DLv~~~ 136 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAES-----TGLEIVLCLNKADLVSPT 136 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEchhcCChH
Confidence 367899999999998654222 22333333322 468999999999997653
No 417
>PRK00098 GTPase RsgA; Reviewed
Probab=95.89 E-value=0.014 Score=58.29 Aligned_cols=48 Identities=25% Similarity=0.123 Sum_probs=34.1
Q ss_pred cccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 355 LRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 355 i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+..+|++++|+|+.++++.... +.+...+.. .++|.++|+||+|+.+.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~-----~~ip~iIVlNK~DL~~~ 126 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-----NGIKPIIVLNKIDLLDD 126 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEEhHHcCCC
Confidence 5789999999999876543332 333333333 46899999999999743
No 418
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.88 E-value=0.012 Score=60.54 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=42.0
Q ss_pred hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
....|.+.++.+|+||.|+|+.+|......+ +.+++..-. .++..|+|+||+|+++.+..
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~-vE~~V~~~~---gnKkLILVLNK~DLVPrEv~ 195 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPE-VEEAVLQAH---GNKKLILVLNKIDLVPREVV 195 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChh-HHHHHHhcc---CCceEEEEeehhccCCHHHH
Confidence 3456788889999999999999876544332 222222111 34889999999999987643
No 419
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.84 E-value=0.0088 Score=55.73 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=35.4
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD 317 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~ 317 (421)
=|.|+|+++||||||+++|....+.+ ...+.||..|..+.+++.
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~ 50 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGK 50 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCc
Confidence 37899999999999999998876544 456789998888876543
No 420
>PRK10867 signal recognition particle protein; Provisional
Probab=95.69 E-value=0.024 Score=59.77 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.4
Q ss_pred ceecccCCCCCChhHHHHHHh
Q 014655 273 ADVGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt 293 (421)
.-|.++|.+++||||++..|.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 457899999999999776664
No 421
>PRK13695 putative NTPase; Provisional
Probab=95.63 E-value=0.058 Score=49.08 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=19.9
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.+|+|+|.+++|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999997643
No 422
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=95.47 E-value=0.00092 Score=62.34 Aligned_cols=122 Identities=19% Similarity=0.172 Sum_probs=73.5
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeee--eccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTL--MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl--~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+.++.++|.-++||+|++.+........ .|- .|+ +-.+-++..++. .-.++.+||+.|....-.. .+
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~-~yR-AtIgvdfalkVl~wdd~-----t~vRlqLwdIagQerfg~m----tr 93 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSY-HYR-ATIGVDFALKVLQWDDK-----TIVRLQLWDIAGQERFGNM----TR 93 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHH-HHH-HHHhHHHHHHHhccChH-----HHHHHHHhcchhhhhhcce----EE
Confidence 4578899999999999999876533110 000 011 111112221110 1136789999997543111 11
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYN--PDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~--~~l~~kP~IIVlNK~Dl~~~ 407 (421)
=+...+.+.++|+|++....++....+.++|..-. +.-.-.|+++..||||+...
T Consensus 94 ---Vyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 94 ---VYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred ---EEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChH
Confidence 12356788899999999887777777777665321 22233668999999998653
No 423
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=95.38 E-value=0.028 Score=56.77 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.2
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
|.....|.++|..++||||||..|-+.+
T Consensus 49 lpsgk~VlvlGdn~sGKtsLi~klqg~e 76 (473)
T KOG3905|consen 49 LPSGKNVLVLGDNGSGKTSLISKLQGSE 76 (473)
T ss_pred CCCCCeEEEEccCCCchhHHHHHhhccc
Confidence 3455679999999999999999998876
No 424
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.35 E-value=0.047 Score=57.47 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=36.4
Q ss_pred cceEEecCCcccccccccCchhHH--HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~--fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..++|+||||..... ..+... -+..+-..+-+++|+|+... .+... ....|... . ...=+|+||+|-
T Consensus 183 ~DvVIIDTaGr~~~d---~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~----~a~~f~~~-v-~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQID---EELMEELAAIKEILNPDEILLVVDAMTG--QDAVN----TAKTFNER-L-GLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCccccC---HHHHHHHHHHHHhhCCceEEEEEeccch--HHHHH----HHHHHHhh-C-CCCEEEEeCccC
Confidence 468999999975421 111111 12223457888999998642 22222 22222211 1 234667999995
Q ss_pred C
Q 014655 405 P 405 (421)
Q Consensus 405 ~ 405 (421)
.
T Consensus 252 ~ 252 (428)
T TIGR00959 252 D 252 (428)
T ss_pred c
Confidence 4
No 425
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.29 E-value=0.072 Score=44.78 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=21.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
..|.++|.|++|||+|++.+.+.-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998753
No 426
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.20 E-value=0.024 Score=52.66 Aligned_cols=41 Identities=34% Similarity=0.455 Sum_probs=30.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceee
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRL 314 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v 314 (421)
-|+|+|+++||||||++.|.+..+.+ .....||..|..+.+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~ 48 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEV 48 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCc
Confidence 58999999999999999998865422 333456666665554
No 427
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.012 Score=55.09 Aligned_cols=43 Identities=33% Similarity=0.397 Sum_probs=35.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGD 317 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~ 317 (421)
=+.|.|+.|||||||+++|.... .+ -....||+.|..|.+++.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~ 49 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGV 49 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCc
Confidence 47789999999999999999887 44 456778999998888764
No 428
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.18 E-value=0.02 Score=60.80 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=43.5
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCCCCCch
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY-LERPFIVVLNKIDLPEMYDDS 411 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l-~~kP~IIVlNK~Dl~~~~e~~ 411 (421)
+-.+.+..++.++++|+||.+||+.++..+.. ..|+.|-.+. ..+..++++||+||..+....
T Consensus 161 NLE~WRQLWRVlErSDivvqIVDARnPllfr~-----~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~ 224 (562)
T KOG1424|consen 161 NLEIWRQLWRVLERSDIVVQIVDARNPLLFRS-----PDLEDYVKEVDPSKANVLLVNKADLLPPEQRV 224 (562)
T ss_pred CHHHHHHHHHHHhhcceEEEEeecCCccccCC-----hhHHHHHhccccccceEEEEehhhcCCHHHHH
Confidence 34566778899999999999999998743322 1222332222 247789999999999876543
No 429
>PRK13796 GTPase YqeH; Provisional
Probab=94.80 E-value=0.056 Score=55.60 Aligned_cols=49 Identities=27% Similarity=0.309 Sum_probs=34.1
Q ss_pred HHHhcccCC-EEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTR-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~rad-vIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++++..++ +|++|||+.+.. .. +..+|..+. .++|+++|+||+|+.+.
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~--~s---~~~~L~~~~---~~kpviLViNK~DLl~~ 111 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN--GS---WIPGLHRFV---GNNPVLLVGNKADLLPK 111 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC--Cc---hhHHHHHHh---CCCCEEEEEEchhhCCC
Confidence 567777666 999999998632 22 333444432 25799999999999754
No 430
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.75 E-value=0.02 Score=63.29 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=46.1
Q ss_pred ceEEecCCcccccccc--cCch----hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655 328 EATLADLPGLIEGAHL--GKGL----GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (421)
Q Consensus 328 ~i~iiDtPGlie~a~~--~~gl----~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK 401 (421)
.++++|+||+..-+.. ...+ ....+.+++.-..+++.|...+.+ +...+ .+......++ .+..++.|++|
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d-~ats~-alkiarevDp--~g~RTigvitK 208 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD-IATSP-ALVVAREVDP--GGSRTLEVITK 208 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh-hhcCH-HHHHHHhhCC--CccchhHHhhh
Confidence 4899999999875442 2333 334567788888888888776532 11112 2233444444 34556778888
Q ss_pred CCCCCC
Q 014655 402 IDLPEM 407 (421)
Q Consensus 402 ~Dl~~~ 407 (421)
.|+.+.
T Consensus 209 ~Dlmdk 214 (657)
T KOG0446|consen 209 FDFMDK 214 (657)
T ss_pred HHhhhc
Confidence 887653
No 431
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.75 E-value=0.0086 Score=51.75 Aligned_cols=29 Identities=34% Similarity=0.370 Sum_probs=24.1
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++..-.++|+|..++|||||+++|++..
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEEccCCCccccceeeecccc
Confidence 34444579999999999999999999864
No 432
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.71 E-value=0.03 Score=52.79 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=30.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeec
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLD 315 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~ 315 (421)
-|.|+|+++||||||+++|....... -..+.||..+..+.+.
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~ 57 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEID 57 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCC
Confidence 47789999999999999998654433 4455667655544443
No 433
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.37 E-value=0.022 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|+|+|.|+|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 434
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.30 E-value=0.034 Score=51.43 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=26.3
Q ss_pred hhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++.++....++|+|.++||||||+++|.+.-
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34455666789999999999999999998754
No 435
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=94.30 E-value=0.027 Score=57.81 Aligned_cols=125 Identities=29% Similarity=0.237 Sum_probs=65.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCcc--------------CCCCeeee---ccc-----eeecCCCC-----CCccc-
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIA--------------DYPFTTLM---PNL-----GRLDGDPT-----LGAEK- 324 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia--------------~~pfTTl~---p~~-----g~v~~~~~-----~~~~~- 324 (421)
++|++||...|||||||--|+..+..-. -..+.|.. ..+ |.+...|. +.+..
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 5899999999999999998875432110 01111110 001 11111110 00000
Q ss_pred ---cccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655 325 ---YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (421)
Q Consensus 325 ---~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK 401 (421)
...-+++||..|+.....-. ..-.--| -.|..+++|-+.....--..+.|--.|. +..|+.+|++|
T Consensus 214 ce~saKviTFIDLAGHEkYLKTT---vFGMTGH--~PDf~MLMiGaNaGIiGmTKEHLgLALa------L~VPVfvVVTK 282 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKYLKTT---VFGMTGH--MPDFTMLMIGANAGIIGMTKEHLGLALA------LHVPVFVVVTK 282 (641)
T ss_pred ccccceeEEEEeccchhhhhhee---eeccccC--CCCceEEEecccccceeccHHhhhhhhh------hcCcEEEEEEe
Confidence 01238899999975431100 0000112 2477788887766433222233333333 46899999999
Q ss_pred CCCCCCC
Q 014655 402 IDLPEMY 408 (421)
Q Consensus 402 ~Dl~~~~ 408 (421)
+|..++.
T Consensus 283 IDMCPAN 289 (641)
T KOG0463|consen 283 IDMCPAN 289 (641)
T ss_pred eccCcHH
Confidence 9988763
No 436
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.01 E-value=0.022 Score=55.39 Aligned_cols=32 Identities=34% Similarity=0.435 Sum_probs=26.8
Q ss_pred hhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.+++...-.|||||.++||||||++-|++.-
T Consensus 46 isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 46 ISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred ceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 34556666689999999999999999999864
No 437
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=93.96 E-value=0.076 Score=54.51 Aligned_cols=46 Identities=28% Similarity=0.272 Sum_probs=31.2
Q ss_pred cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+.++++++|+|+.+... . +..++..+. .++|+++|+||+|+.+..
T Consensus 61 ~~~~~~Il~VvD~~d~~~--s---~~~~l~~~~---~~~piilV~NK~DLl~k~ 106 (360)
T TIGR03597 61 GDSNALIVYVVDIFDFEG--S---LIPELKRFV---GGNPVLLVGNKIDLLPKS 106 (360)
T ss_pred ccCCcEEEEEEECcCCCC--C---ccHHHHHHh---CCCCEEEEEEchhhCCCC
Confidence 367889999999976431 1 223333332 258999999999997643
No 438
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.89 E-value=0.24 Score=49.77 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=66.2
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccc----------
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG---------- 340 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~---------- 340 (421)
..+.+.|||.+|.|||++++++....+...+... .. ..+..+.+|.--+.
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~-~~-------------------~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA-ER-------------------IPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC-cc-------------------ccEEEEecCCCCChHHHHHHHHHH
Confidence 3467899999999999999999988764322111 11 13444444432210
Q ss_pred ------ccc-cCchhHHHHHhcccCCEEEEEeeCCCC---CChhhHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 014655 341 ------AHL-GKGLGRNFLRHLRRTRLLVHVIDAAAE---NPVNDYRTVKEELRMYNPDYLERPFIVVLNK 401 (421)
Q Consensus 341 ------a~~-~~gl~~~fL~~i~radvIl~VvD~s~~---~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK 401 (421)
... ...+....+..++.+.+=++|||--+. .+..+.+.+++.|+.+. +....|+|.|.++
T Consensus 120 lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 120 LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTR 189 (302)
T ss_pred hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccH
Confidence 000 011233345667788888999995442 22344556667776654 3467899988765
No 439
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.84 E-value=0.23 Score=52.28 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.+-.+|+|||+.++||||||..|++.
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcC
Confidence 44558999999999999999999875
No 440
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=0.23 Score=50.73 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.5
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKP 297 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~ 297 (421)
...-|+++|.-++|||||++.|....+
T Consensus 187 df~VIgvlG~QgsGKStllslLaans~ 213 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANSL 213 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccCh
Confidence 345689999999999999999987643
No 441
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.73 E-value=0.038 Score=53.90 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.1
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
=|+|||++++|||||||.+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
No 442
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.70 E-value=0.025 Score=52.87 Aligned_cols=29 Identities=34% Similarity=0.426 Sum_probs=24.5
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++... .++|+|..++|||||++.|.+..
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 455556 79999999999999999999864
No 443
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.61 E-value=0.036 Score=50.92 Aligned_cols=42 Identities=38% Similarity=0.516 Sum_probs=31.7
Q ss_pred ecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeeccceeecC
Q 014655 275 VGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDG 316 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~v~~ 316 (421)
|.|+|++++||+||.++|....+. . ...+.||..|..+.+++
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g 48 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDG 48 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TT
T ss_pred EEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCC
Confidence 678999999999999999887653 2 44567888887776654
No 444
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=93.58 E-value=0.32 Score=51.07 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.1
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
=||+||+.-+|||||++++..
T Consensus 19 YiGVVGPVRTGKSTFIKRFMe 39 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFME 39 (492)
T ss_pred EEEeecCcccCchhHHHHHHH
Confidence 489999999999999999864
No 445
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.46 E-value=0.031 Score=52.49 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=24.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...-.++|+|..+||||||++.|++..
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 33444479999999999999999999864
No 446
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45 E-value=0.031 Score=53.25 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=24.1
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|..+||||||++.|++..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444479999999999999999999864
No 447
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.43 E-value=0.033 Score=52.12 Aligned_cols=30 Identities=37% Similarity=0.311 Sum_probs=24.7
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...-.++|+|..+||||||++.|++..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444579999999999999999999864
No 448
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.41 E-value=0.032 Score=51.82 Aligned_cols=29 Identities=28% Similarity=0.319 Sum_probs=24.2
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|..++|||||++.|.+..
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 20 TIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44444579999999999999999999864
No 449
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.41 E-value=0.032 Score=52.36 Aligned_cols=29 Identities=38% Similarity=0.306 Sum_probs=24.2
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...-.++|+|..+||||||++.|.+..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444479999999999999999999864
No 450
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.39 E-value=0.055 Score=41.79 Aligned_cols=21 Identities=43% Similarity=0.457 Sum_probs=18.5
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
...|.|..++|||||+.|+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999853
No 451
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.04 Score=52.95 Aligned_cols=29 Identities=38% Similarity=0.407 Sum_probs=23.5
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.++-.--++|+|+.+||||||++.|++.-
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGel 51 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGEL 51 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhCcc
Confidence 34444468999999999999999999853
No 452
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.36 E-value=0.033 Score=52.04 Aligned_cols=28 Identities=32% Similarity=0.304 Sum_probs=23.4
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+...-.++|+|..+||||||++.|++..
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344478999999999999999999864
No 453
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.33 E-value=0.037 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=17.9
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+|+|+|.+++|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999876
No 454
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.32 E-value=0.036 Score=52.24 Aligned_cols=30 Identities=37% Similarity=0.438 Sum_probs=24.7
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.++..-.++|+|..+||||||++.|++..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 26 FSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444579999999999999999999864
No 455
>PRK12288 GTPase RsgA; Reviewed
Probab=93.32 E-value=0.18 Score=51.63 Aligned_cols=49 Identities=24% Similarity=0.135 Sum_probs=33.7
Q ss_pred cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+|.+++|++.........++.++...+. .++|.+||+||+|+.+..
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-----~~i~~VIVlNK~DL~~~~ 166 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET-----LGIEPLIVLNKIDLLDDE 166 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-----cCCCEEEEEECccCCCcH
Confidence 3568999999987654444444444433332 468999999999997644
No 456
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=93.31 E-value=0.14 Score=53.21 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=39.5
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.....+.|..+|+||.|+|+.++-- .....+.+.|+.-. ..+.+|.|+||+||++..
T Consensus 204 W~ELyKViDSSDVvvqVlDARDPmG-Trc~~ve~ylkke~---phKHli~vLNKvDLVPtw 260 (572)
T KOG2423|consen 204 WGELYKVIDSSDVVVQVLDARDPMG-TRCKHVEEYLKKEK---PHKHLIYVLNKVDLVPTW 260 (572)
T ss_pred HHHHHHhhcccceeEEeeeccCCcc-cccHHHHHHHhhcC---CcceeEEEeeccccccHH
Confidence 3334566788999999999987532 22344555665532 457799999999998753
No 457
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.30 E-value=0.054 Score=42.07 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.0
Q ss_pred ecccCCCCCChhHHHHHHhcC
Q 014655 275 VGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~ 295 (421)
|++.|.+++||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999864
No 458
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.28 E-value=0.046 Score=47.36 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.2
Q ss_pred ecccCCCCCChhHHHHHHhcCC
Q 014655 275 VGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
|.++|+|+||||||...|....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6789999999999999998543
No 459
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.28 E-value=0.037 Score=51.86 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=24.7
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...-.++|+|..+||||||++.|++..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344445579999999999999999999864
No 460
>PRK07261 topology modulation protein; Provisional
Probab=93.27 E-value=0.052 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.0
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+|+|+|.|++|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 461
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=93.26 E-value=0.063 Score=55.47 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=45.5
Q ss_pred ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC----------hhhHHHHHHHHHhcCCCCCCCCEEE
Q 014655 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP----------VNDYRTVKEELRMYNPDYLERPFIV 397 (421)
Q Consensus 328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~----------~~~~~~l~~eL~~~~~~l~~kP~II 397 (421)
.+.++|+.|... -.+.|..+++.+++||||+++++-+. ..+--.+.+++.. ++-+.+.|+|+
T Consensus 237 ~~~~~DvGGqr~-------eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~-~~~~~~~~iil 308 (389)
T PF00503_consen 237 KFRLIDVGGQRS-------ERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICN-NPWFKNTPIIL 308 (389)
T ss_dssp EEEEEEETSSGG-------GGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHT-SGGGTTSEEEE
T ss_pred ccceecCCCCch-------hhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHh-CcccccCceEE
Confidence 468999999743 25677788899999999999876321 1111223333322 12335789999
Q ss_pred EEeCCCCC
Q 014655 398 VLNKIDLP 405 (421)
Q Consensus 398 VlNK~Dl~ 405 (421)
++||+|+.
T Consensus 309 ~lnK~D~f 316 (389)
T PF00503_consen 309 FLNKIDLF 316 (389)
T ss_dssp EEE-HHHH
T ss_pred eeecHHHH
Confidence 99999974
No 462
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.25 E-value=0.074 Score=54.96 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=52.9
Q ss_pred hhhceecccCCCCCChhHHHHHHhcC------CCCc--cC------------CCCeeeeccceeecC-CCCC-------C
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHA------KPDI--AD------------YPFTTLMPNLGRLDG-DPTL-------G 321 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~------~~~i--a~------------~pfTTl~p~~g~v~~-~~~~-------~ 321 (421)
....-|.+||.-++||||.+..|... ++.. ++ ..-.+..|.++.... +|.. .
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 33446789999999999999887531 1111 11 011112333332111 1100 0
Q ss_pred ccccccceEEecCCcccccccccCchhHHHHHh--cccCCEEEEEeeCCCCCC
Q 014655 322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRH--LRRTRLLVHVIDAAAENP 372 (421)
Q Consensus 322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~--i~radvIl~VvD~s~~~~ 372 (421)
...-+..++|+||.|-... ..+|-...+.. .-.-|-+|||+|++-...
T Consensus 179 fKke~fdvIIvDTSGRh~q---e~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQ---EASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred HHhcCCcEEEEeCCCchhh---hHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 0011347999999996432 33343332221 123689999999986543
No 463
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.25 E-value=0.036 Score=52.25 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=24.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...-.++|+|..+||||||++.|++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444479999999999999999999864
No 464
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.24 E-value=0.036 Score=51.05 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=22.9
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
...-.++|+|..+||||||++.|++..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 333479999999999999999999864
No 465
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.23 E-value=0.04 Score=52.27 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=23.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|..+||||||++.|++..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444479999999999999999999864
No 466
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.23 E-value=0.036 Score=51.64 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=24.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...-.++|+|..+||||||++.|++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444479999999999999999999864
No 467
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.19 E-value=0.054 Score=50.99 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=21.1
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.|+|+|+.+||||||+|-+.+-.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 69999999999999999998754
No 468
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.18 E-value=0.039 Score=53.26 Aligned_cols=30 Identities=33% Similarity=0.376 Sum_probs=23.9
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++++..--|+|+|+.+||||||||.|.+-+
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344444469999999999999999998754
No 469
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=93.13 E-value=0.14 Score=52.50 Aligned_cols=73 Identities=19% Similarity=0.347 Sum_probs=48.7
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCCh--hh--HHHHHHHHHhc-----CCCCCCCCEEE
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV--ND--YRTVKEELRMY-----NPDYLERPFIV 397 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~--~~--~~~l~~eL~~~-----~~~l~~kP~II 397 (421)
..+.+.|++|.... .+.|....+.+++|+||++.++.+.. ++ ...+.+-++.| ++-..+.++|+
T Consensus 195 ~~f~~~DvGGQRse-------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL 267 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSE-------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL 267 (354)
T ss_pred CceEEEeCCCcHHH-------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence 35889999996432 44566677999999999999875321 11 12233333332 23445789999
Q ss_pred EEeCCCCCC
Q 014655 398 VLNKIDLPE 406 (421)
Q Consensus 398 VlNK~Dl~~ 406 (421)
.+||.||-+
T Consensus 268 FLNK~DLFe 276 (354)
T KOG0082|consen 268 FLNKKDLFE 276 (354)
T ss_pred EeecHHHHH
Confidence 999999864
No 470
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.10 E-value=0.038 Score=51.92 Aligned_cols=29 Identities=34% Similarity=0.323 Sum_probs=24.1
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|..++|||||++.|.+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444479999999999999999998864
No 471
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.07 E-value=0.042 Score=52.37 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=24.3
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
++++..-.++|+|..++|||||++.|.+.
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444457999999999999999999986
No 472
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.05 E-value=0.039 Score=51.58 Aligned_cols=29 Identities=28% Similarity=0.204 Sum_probs=24.1
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|..++|||||++.|++..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444479999999999999999999864
No 473
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.05 E-value=0.039 Score=51.53 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=23.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|..++|||||++.|++..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444479999999999999999999864
No 474
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.03 E-value=0.043 Score=51.28 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=23.5
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+...-.++|+|..++|||||++.|++..
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344479999999999999999999864
No 475
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.03 E-value=0.039 Score=51.85 Aligned_cols=29 Identities=31% Similarity=0.286 Sum_probs=23.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.++..-.++|+|..+||||||++.|++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444479999999999999999999864
No 476
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.01 E-value=0.043 Score=52.39 Aligned_cols=30 Identities=37% Similarity=0.408 Sum_probs=24.5
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...-.++|+|..+||||||++.|++..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 344444479999999999999999999864
No 477
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.98 E-value=0.041 Score=51.74 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=24.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...-.++|+|..+||||||++.|++..
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444479999999999999999999864
No 478
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.98 E-value=0.04 Score=51.93 Aligned_cols=30 Identities=40% Similarity=0.400 Sum_probs=24.5
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...-.++|+|..+||||||++.|++..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444479999999999999999999864
No 479
>PRK01889 GTPase RsgA; Reviewed
Probab=92.97 E-value=0.22 Score=51.11 Aligned_cols=48 Identities=15% Similarity=0.011 Sum_probs=32.5
Q ss_pred cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+..+|.+++|+++..+.....++.++..++. .+.+.+||+||+||.+.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~-----~~i~piIVLNK~DL~~~ 157 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE-----SGAEPVIVLTKADLCED 157 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH-----cCCCEEEEEEChhcCCC
Confidence 4678999999999643223334444444444 45677999999999765
No 480
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.92 E-value=0.04 Score=50.94 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=22.3
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
++...-.|+|+|+.++||||||+.+..
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 344445799999999999999999864
No 481
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.92 E-value=0.042 Score=51.58 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=24.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|..++|||||++.|++-.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 34444479999999999999999999864
No 482
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.91 E-value=0.042 Score=51.39 Aligned_cols=29 Identities=41% Similarity=0.358 Sum_probs=23.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...-.++|+|..++|||||++.|++..
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33344479999999999999999999864
No 483
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.90 E-value=0.044 Score=52.07 Aligned_cols=29 Identities=34% Similarity=0.366 Sum_probs=24.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|..++|||||++.|.+..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34444479999999999999999999864
No 484
>PRK08118 topology modulation protein; Reviewed
Probab=92.90 E-value=0.064 Score=49.00 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.8
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.+|.|+|.|+||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 485
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.90 E-value=0.043 Score=50.18 Aligned_cols=30 Identities=37% Similarity=0.433 Sum_probs=24.5
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...-.++|+|..++|||||++.|++..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444579999999999999999999864
No 486
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=92.89 E-value=0.041 Score=48.84 Aligned_cols=29 Identities=41% Similarity=0.486 Sum_probs=23.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|..++|||||++.|++..
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34444478999999999999999998864
No 487
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.88 E-value=0.046 Score=51.22 Aligned_cols=30 Identities=37% Similarity=0.350 Sum_probs=24.6
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...-.++|+|..++|||||++.|.+..
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 344444579999999999999999999864
No 488
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.86 E-value=0.043 Score=49.59 Aligned_cols=30 Identities=33% Similarity=0.337 Sum_probs=24.7
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.++..-.++|+|..++|||||++.|.+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444579999999999999999999865
No 489
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.84 E-value=0.058 Score=48.02 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.8
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|+++|+.|+|||||+..|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998764
No 490
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.83 E-value=0.042 Score=51.95 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=24.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|..+||||||++.|.+..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33344479999999999999999999875
No 491
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=92.81 E-value=0.047 Score=52.62 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=25.5
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAKP 297 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~ 297 (421)
++++..-.++|+|..++|||||++.|++..+
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4445555799999999999999999998753
No 492
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.81 E-value=0.047 Score=51.89 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=24.4
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP 297 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~ 297 (421)
++...-.++|+|..++|||||++.|++..+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334444799999999999999999998643
No 493
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.80 E-value=0.043 Score=50.88 Aligned_cols=29 Identities=28% Similarity=0.217 Sum_probs=24.1
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++..-.++|+|..++|||||++.|.+..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444479999999999999999999864
No 494
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=92.76 E-value=0.047 Score=50.64 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=24.3
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...-.++|+|..++|||||++.|++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444579999999999999999999864
No 495
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.74 E-value=0.047 Score=50.79 Aligned_cols=30 Identities=33% Similarity=0.284 Sum_probs=24.7
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...-.++|+|..++|||||++.|.+..
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444579999999999999999999864
No 496
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.72 E-value=0.078 Score=43.92 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.6
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+.|+|+|++||||++..|...-
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc
Confidence 58899999999999999998754
No 497
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.68 E-value=0.045 Score=52.70 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=23.5
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.+...-.++|+|..+||||||++.|++.
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444447999999999999999999975
No 498
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.68 E-value=0.053 Score=50.21 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=22.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+..-.++|+|..+||||||++.|++-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 333479999999999999999999864
No 499
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.66 E-value=0.051 Score=52.26 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=24.7
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++++..-.++|+|..++|||||++.|++..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344444579999999999999999999864
No 500
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.65 E-value=0.07 Score=49.49 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.5
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+|.|+|.|||||||+-..|+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
Done!