Query 014655
Match_columns 421
No_of_seqs 338 out of 2748
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lnz_A SPO0B-associated GTP-bi 100.0 3.7E-70 1.3E-74 549.6 20.7 292 75-414 1-296 (342)
2 1udx_A The GTP-binding protein 100.0 1.2E-63 4E-68 514.1 19.6 283 75-407 1-284 (416)
3 4a9a_A Ribosome-interacting GT 99.9 7.5E-24 2.5E-28 215.2 7.2 126 270-405 70-195 (376)
4 1xzp_A Probable tRNA modificat 99.9 1.3E-24 4.3E-29 227.5 -8.0 253 74-407 86-365 (482)
5 1wxq_A GTP-binding protein; st 99.7 7.5E-19 2.6E-23 179.6 5.2 113 274-386 2-141 (397)
6 1jal_A YCHF protein; nucleotid 99.7 4.6E-18 1.6E-22 171.9 10.1 111 273-383 3-132 (363)
7 2dby_A GTP-binding protein; GD 99.7 1.5E-17 5.2E-22 168.5 9.4 111 273-383 2-135 (368)
8 3iev_A GTP-binding protein ERA 99.7 1.9E-17 6.5E-22 163.1 9.5 121 274-406 12-136 (308)
9 2dyk_A GTP-binding protein; GT 99.7 4.7E-17 1.6E-21 141.2 10.8 134 272-419 1-135 (161)
10 1mky_A Probable GTP-binding pr 99.7 3.3E-17 1.1E-21 168.9 9.6 133 273-419 2-139 (439)
11 1wf3_A GTP-binding protein; GT 99.7 6.8E-17 2.3E-21 159.1 10.9 125 273-409 8-134 (301)
12 3lxw_A GTPase IMAP family memb 99.7 7.2E-17 2.4E-21 154.0 8.8 126 273-407 22-154 (247)
13 3gee_A MNME, tRNA modification 99.7 7.8E-17 2.7E-21 168.3 8.3 130 268-409 229-360 (476)
14 2gj8_A MNME, tRNA modification 99.7 1.3E-16 4.5E-21 142.6 8.6 123 273-406 5-129 (172)
15 2hjg_A GTP-binding protein ENG 99.7 9E-17 3.1E-21 165.4 8.6 133 273-419 4-138 (436)
16 3tkl_A RAS-related protein RAB 99.7 2.2E-16 7.4E-21 141.9 9.5 124 270-408 14-137 (196)
17 3iby_A Ferrous iron transport 99.7 2.9E-17 9.9E-22 158.0 3.9 119 273-408 2-126 (256)
18 2qu8_A Putative nucleolar GTP- 99.6 4.5E-16 1.5E-20 145.1 10.8 127 272-409 29-159 (228)
19 1g16_A RAS-related protein SEC 99.6 2.7E-16 9.2E-21 137.3 8.6 120 273-407 4-123 (170)
20 3lxx_A GTPase IMAP family memb 99.6 2.1E-16 7.1E-21 148.8 7.6 128 271-408 28-161 (239)
21 4dhe_A Probable GTP-binding pr 99.6 1.8E-16 6.3E-21 146.0 6.9 125 272-409 29-161 (223)
22 3cph_A RAS-related protein SEC 99.6 4.8E-16 1.6E-20 141.7 9.5 124 269-407 17-140 (213)
23 2qtf_A Protein HFLX, GTP-bindi 99.6 4.8E-16 1.6E-20 157.1 10.4 125 272-408 179-308 (364)
24 3tw8_B RAS-related protein RAB 99.6 3.6E-16 1.2E-20 137.9 7.8 122 271-408 8-129 (181)
25 3clv_A RAB5 protein, putative; 99.6 1.3E-15 4.4E-20 136.2 11.5 122 272-404 7-159 (208)
26 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.2E-15 3.9E-20 134.7 10.7 124 272-408 7-132 (177)
27 4dcu_A GTP-binding protein ENG 99.6 3.3E-16 1.1E-20 162.1 8.3 134 272-419 23-158 (456)
28 4dsu_A GTPase KRAS, isoform 2B 99.6 1.1E-15 3.9E-20 135.9 10.3 124 273-411 5-128 (189)
29 4bas_A ADP-ribosylation factor 99.6 1.1E-15 3.8E-20 137.6 9.9 121 273-409 18-144 (199)
30 2lkc_A Translation initiation 99.6 1.9E-15 6.6E-20 133.4 11.0 115 272-407 8-122 (178)
31 3i8s_A Ferrous iron transport 99.6 1.9E-16 6.4E-21 153.5 4.8 119 273-407 4-127 (274)
32 1z0j_A RAB-22, RAS-related pro 99.6 2E-15 6.8E-20 131.8 10.6 119 273-408 7-127 (170)
33 3pqc_A Probable GTP-binding pr 99.6 1.9E-15 6.4E-20 135.2 10.5 121 272-409 23-150 (195)
34 2g6b_A RAS-related protein RAB 99.6 1.6E-15 5.5E-20 134.1 9.9 122 272-408 10-132 (180)
35 1x3s_A RAS-related protein RAB 99.6 1.4E-15 4.8E-20 136.2 9.6 121 273-407 16-136 (195)
36 2bme_A RAB4A, RAS-related prot 99.6 9.9E-16 3.4E-20 136.4 8.5 122 271-407 9-130 (186)
37 1vg8_A RAS-related protein RAB 99.6 2.2E-15 7.5E-20 136.7 10.9 124 272-408 8-133 (207)
38 2efe_B Small GTP-binding prote 99.6 2E-15 6.7E-20 133.7 10.3 121 273-408 13-133 (181)
39 1ek0_A Protein (GTP-binding pr 99.6 1.7E-15 5.8E-20 132.0 9.7 120 273-407 4-123 (170)
40 1r8s_A ADP-ribosylation factor 99.6 4.1E-15 1.4E-19 129.5 12.0 117 274-409 2-118 (164)
41 1z0f_A RAB14, member RAS oncog 99.6 1.8E-15 6E-20 133.2 9.8 120 272-407 15-135 (179)
42 1svi_A GTP-binding protein YSX 99.6 1.5E-15 5.1E-20 136.5 9.3 121 272-409 23-151 (195)
43 1zbd_A Rabphilin-3A; G protein 99.6 2.6E-15 8.7E-20 136.3 11.0 122 272-408 8-129 (203)
44 3b1v_A Ferrous iron uptake tra 99.6 6.5E-16 2.2E-20 150.1 7.4 116 273-406 4-121 (272)
45 2wji_A Ferrous iron transport 99.6 2.1E-15 7.1E-20 133.4 10.0 117 273-406 4-122 (165)
46 2erx_A GTP-binding protein DI- 99.6 1.6E-15 5.5E-20 132.4 9.0 122 273-408 4-125 (172)
47 2y8e_A RAB-protein 6, GH09086P 99.6 9.6E-16 3.3E-20 134.9 7.5 121 273-408 15-135 (179)
48 2il1_A RAB12; G-protein, GDP, 99.6 9E-16 3.1E-20 139.0 7.5 122 272-408 26-147 (192)
49 3q72_A GTP-binding protein RAD 99.6 1.7E-15 5.8E-20 132.2 8.9 120 273-409 3-123 (166)
50 2ohf_A Protein OLA1, GTP-bindi 99.6 4.5E-16 1.5E-20 158.9 6.0 118 268-385 18-154 (396)
51 2bcg_Y Protein YP2, GTP-bindin 99.6 1.6E-15 5.6E-20 138.1 8.9 123 271-408 7-129 (206)
52 1z2a_A RAS-related protein RAB 99.6 1E-15 3.5E-20 133.4 7.2 119 273-407 6-124 (168)
53 1upt_A ARL1, ADP-ribosylation 99.6 3E-15 1E-19 131.1 10.2 121 270-409 5-125 (171)
54 2nzj_A GTP-binding protein REM 99.6 4.2E-15 1.4E-19 130.6 10.7 122 273-408 5-127 (175)
55 1zd9_A ADP-ribosylation factor 99.6 3.6E-15 1.2E-19 134.3 10.5 122 270-409 20-141 (188)
56 1ksh_A ARF-like protein 2; sma 99.6 2.3E-15 7.9E-20 134.5 9.1 120 271-409 17-136 (186)
57 1u8z_A RAS-related protein RAL 99.6 1.9E-15 6.4E-20 131.2 8.3 120 273-407 5-124 (168)
58 2hjg_A GTP-binding protein ENG 99.6 1.6E-15 5.4E-20 156.1 9.1 125 271-409 174-303 (436)
59 2h57_A ADP-ribosylation factor 99.6 2.4E-15 8.1E-20 135.3 9.1 120 272-408 21-142 (190)
60 1r2q_A RAS-related protein RAB 99.6 2.5E-15 8.6E-20 130.9 8.9 118 273-407 7-126 (170)
61 2fg5_A RAB-22B, RAS-related pr 99.6 4E-15 1.4E-19 134.5 10.4 119 271-406 22-142 (192)
62 1ky3_A GTP-binding protein YPT 99.6 2.7E-15 9.3E-20 132.4 9.0 124 272-407 8-133 (182)
63 3bc1_A RAS-related protein RAB 99.6 6.2E-15 2.1E-19 131.2 11.4 128 272-407 11-142 (195)
64 2q3h_A RAS homolog gene family 99.6 1.1E-15 3.9E-20 138.4 6.6 122 269-407 17-139 (201)
65 1c1y_A RAS-related protein RAP 99.6 4E-15 1.4E-19 129.5 9.7 121 273-408 4-124 (167)
66 2a5j_A RAS-related protein RAB 99.6 2.5E-15 8.6E-20 135.5 8.7 121 272-407 21-141 (191)
67 1z06_A RAS-related protein RAB 99.6 4.2E-15 1.4E-19 133.6 10.1 124 272-408 20-143 (189)
68 2h17_A ADP-ribosylation factor 99.6 3.1E-15 1.1E-19 133.8 9.0 118 272-408 21-138 (181)
69 1z08_A RAS-related protein RAB 99.6 1.1E-15 3.9E-20 133.6 6.1 120 273-407 7-126 (170)
70 3a1s_A Iron(II) transport prot 99.6 8.5E-16 2.9E-20 147.8 5.7 117 273-406 6-124 (258)
71 3q85_A GTP-binding protein REM 99.6 4.1E-15 1.4E-19 130.2 9.5 123 272-407 2-124 (169)
72 1zj6_A ADP-ribosylation factor 99.6 3.8E-15 1.3E-19 133.7 9.4 119 271-408 15-133 (187)
73 2gf0_A GTP-binding protein DI- 99.6 3.8E-15 1.3E-19 134.0 9.4 122 273-408 9-130 (199)
74 2gf9_A RAS-related protein RAB 99.6 2.5E-15 8.6E-20 135.1 8.2 123 271-408 21-143 (189)
75 1kao_A RAP2A; GTP-binding prot 99.6 5E-15 1.7E-19 128.3 9.8 121 273-408 4-124 (167)
76 3t5g_A GTP-binding protein RHE 99.6 5.2E-15 1.8E-19 131.4 10.0 121 273-408 7-127 (181)
77 3def_A T7I23.11 protein; chlor 99.6 4.3E-15 1.5E-19 142.4 10.2 128 272-407 36-166 (262)
78 2bov_A RAla, RAS-related prote 99.6 5.2E-15 1.8E-19 133.9 10.1 122 272-408 14-135 (206)
79 2a9k_A RAS-related protein RAL 99.6 3.2E-15 1.1E-19 132.4 8.5 120 273-407 19-138 (187)
80 3t1o_A Gliding protein MGLA; G 99.6 1.8E-14 6.1E-19 128.8 13.3 126 272-407 14-150 (198)
81 2hup_A RAS-related protein RAB 99.6 3E-15 1E-19 136.9 8.4 124 269-407 26-149 (201)
82 3geh_A MNME, tRNA modification 99.6 8.7E-16 3E-20 159.9 5.4 125 268-408 220-346 (462)
83 2ce2_X GTPase HRAS; signaling 99.6 6.1E-15 2.1E-19 127.4 9.9 121 273-408 4-124 (166)
84 2ew1_A RAS-related protein RAB 99.6 3E-15 1E-19 137.7 8.2 123 270-407 24-146 (201)
85 1mh1_A RAC1; GTP-binding, GTPa 99.6 1.9E-15 6.6E-20 134.1 6.6 118 273-407 6-124 (186)
86 2fu5_C RAS-related protein RAB 99.6 7.3E-16 2.5E-20 137.2 3.8 122 272-408 8-129 (183)
87 1ega_A Protein (GTP-binding pr 99.6 1E-15 3.4E-20 150.5 5.2 118 274-406 10-130 (301)
88 2oil_A CATX-8, RAS-related pro 99.6 3.3E-15 1.1E-19 134.5 8.1 121 270-407 23-145 (193)
89 3con_A GTPase NRAS; structural 99.6 6.6E-15 2.3E-19 132.0 9.8 120 273-407 22-141 (190)
90 1fzq_A ADP-ribosylation factor 99.6 1.1E-14 3.7E-19 130.8 11.1 115 272-409 16-134 (181)
91 3dz8_A RAS-related protein RAB 99.6 1.9E-15 6.5E-20 136.3 6.1 122 270-408 21-144 (191)
92 2hxs_A RAB-26, RAS-related pro 99.6 7E-16 2.4E-20 136.2 3.0 123 273-407 7-130 (178)
93 2atx_A Small GTP binding prote 99.6 6.5E-15 2.2E-19 132.7 9.3 118 273-407 19-137 (194)
94 2fn4_A P23, RAS-related protei 99.6 4.3E-15 1.5E-19 131.0 7.9 120 273-408 10-130 (181)
95 2wjg_A FEOB, ferrous iron tran 99.6 1.6E-15 5.5E-20 135.5 5.1 117 273-406 8-126 (188)
96 3cbq_A GTP-binding protein REM 99.6 6.6E-15 2.3E-19 134.3 9.3 124 272-408 23-146 (195)
97 2p5s_A RAS and EF-hand domain 99.6 4.8E-15 1.6E-19 134.7 8.2 121 270-405 26-146 (199)
98 4dcu_A GTP-binding protein ENG 99.6 7E-15 2.4E-19 152.2 10.3 124 271-408 194-322 (456)
99 1m2o_B GTP-binding protein SAR 99.6 1.3E-14 4.4E-19 131.5 10.6 116 273-407 24-139 (190)
100 3l0i_B RAS-related protein RAB 99.6 8.4E-16 2.9E-20 139.7 2.7 123 270-407 31-153 (199)
101 3oes_A GTPase rhebl1; small GT 99.6 5.3E-15 1.8E-19 134.6 8.0 124 270-408 22-145 (201)
102 4gzl_A RAS-related C3 botulinu 99.6 3.5E-15 1.2E-19 136.8 6.8 121 272-409 30-151 (204)
103 1h65_A Chloroplast outer envel 99.5 1.2E-14 4.1E-19 139.8 10.7 129 272-408 39-170 (270)
104 3kkq_A RAS-related protein M-R 99.5 9.4E-15 3.2E-19 130.0 9.2 121 273-408 19-139 (183)
105 1moz_A ARL1, ADP-ribosylation 99.5 3.7E-15 1.3E-19 132.3 6.6 119 272-409 18-136 (183)
106 2o52_A RAS-related protein RAB 99.5 1.8E-15 6.3E-20 138.0 4.5 123 270-407 23-145 (200)
107 3r7w_A Gtpase1, GTP-binding pr 99.5 5.5E-15 1.9E-19 145.4 8.2 125 273-406 4-129 (307)
108 2yc2_C IFT27, small RAB-relate 99.5 5.3E-15 1.8E-19 133.8 7.2 124 272-406 20-146 (208)
109 3lvq_E ARF-GAP with SH3 domain 99.5 1.3E-14 4.4E-19 151.1 11.1 129 271-418 321-449 (497)
110 2iwr_A Centaurin gamma 1; ANK 99.5 8.7E-15 3E-19 129.6 8.4 113 273-405 8-121 (178)
111 2gco_A H9, RHO-related GTP-bin 99.5 8.1E-15 2.8E-19 133.6 8.2 119 273-408 26-145 (201)
112 3bwd_D RAC-like GTP-binding pr 99.5 3.1E-15 1.1E-19 132.5 5.3 120 272-408 8-128 (182)
113 2fv8_A H6, RHO-related GTP-bin 99.5 4.8E-15 1.6E-19 135.7 6.7 119 273-408 26-145 (207)
114 1jwy_B Dynamin A GTPase domain 99.5 2E-14 6.9E-19 140.0 11.4 84 327-415 131-222 (315)
115 2b6h_A ADP-ribosylation factor 99.5 9.5E-15 3.2E-19 132.6 8.2 119 272-409 29-147 (192)
116 3reg_A RHO-like small GTPase; 99.5 9.3E-15 3.2E-19 131.9 8.1 120 271-407 22-142 (194)
117 1f6b_A SAR1; gtpases, N-termin 99.5 1.1E-14 3.8E-19 133.0 8.5 116 273-407 26-141 (198)
118 2e87_A Hypothetical protein PH 99.5 3E-14 1E-18 142.8 12.5 127 271-408 166-296 (357)
119 3qq5_A Small GTP-binding prote 99.5 8.1E-15 2.8E-19 151.0 8.5 125 271-410 33-158 (423)
120 2x77_A ADP-ribosylation factor 99.5 1.6E-14 5.6E-19 129.5 9.4 119 272-409 22-140 (189)
121 2atv_A RERG, RAS-like estrogen 99.5 1E-14 3.4E-19 132.1 8.0 120 272-407 28-147 (196)
122 3cpj_B GTP-binding protein YPT 99.5 4.4E-15 1.5E-19 137.8 5.6 122 271-407 12-133 (223)
123 2xtp_A GTPase IMAP family memb 99.5 1.7E-14 5.7E-19 137.3 9.7 126 272-407 22-154 (260)
124 2j1l_A RHO-related GTP-binding 99.5 6.4E-15 2.2E-19 136.0 6.6 120 272-408 34-154 (214)
125 2ged_A SR-beta, signal recogni 99.5 1.7E-14 5.9E-19 129.6 8.6 125 271-410 47-174 (193)
126 2fh5_B SR-beta, signal recogni 99.5 3.3E-14 1.1E-18 130.2 10.6 123 272-409 7-132 (214)
127 2j0v_A RAC-like GTP-binding pr 99.5 7.2E-15 2.5E-19 134.4 6.0 118 273-407 10-128 (212)
128 1mky_A Probable GTP-binding pr 99.5 2.7E-14 9.4E-19 147.0 10.6 124 271-408 179-308 (439)
129 2f7s_A C25KG, RAS-related prot 99.5 3.2E-14 1.1E-18 130.6 9.6 128 270-407 23-156 (217)
130 4djt_A GTP-binding nuclear pro 99.5 1.5E-14 5E-19 132.9 7.4 121 272-408 11-133 (218)
131 1m7b_A RND3/RHOE small GTP-bin 99.5 1.9E-14 6.5E-19 129.0 7.9 117 273-406 8-125 (184)
132 3gj0_A GTP-binding nuclear pro 99.5 2.1E-14 7E-19 132.6 7.8 118 273-408 16-135 (221)
133 3q3j_B RHO-related GTP-binding 99.5 3.7E-14 1.3E-18 131.2 8.8 118 272-406 27-145 (214)
134 3c5c_A RAS-like protein 12; GD 99.5 2.6E-14 8.9E-19 129.0 7.5 120 273-407 22-142 (187)
135 3th5_A RAS-related C3 botulinu 99.2 2E-15 6.7E-20 137.6 0.0 122 270-408 28-150 (204)
136 1gwn_A RHO-related GTP-binding 99.5 2.9E-14 1E-18 131.3 7.9 119 271-406 27-146 (205)
137 3llu_A RAS-related GTP-binding 99.5 4E-14 1.4E-18 128.5 8.1 123 272-407 20-144 (196)
138 2aka_B Dynamin-1; fusion prote 99.5 3.9E-14 1.3E-18 136.7 8.4 134 271-409 25-209 (299)
139 3k53_A Ferrous iron transport 99.5 2.4E-14 8.1E-19 137.8 6.8 119 272-406 3-123 (271)
140 3ihw_A Centg3; RAS, centaurin, 99.5 7.5E-14 2.6E-18 126.0 9.3 112 273-405 21-132 (184)
141 3t5d_A Septin-7; GTP-binding p 99.5 5.7E-14 2E-18 135.5 9.0 127 273-409 9-161 (274)
142 3o47_A ADP-ribosylation factor 99.5 6E-14 2.1E-18 139.4 7.9 126 272-416 165-290 (329)
143 2wkq_A NPH1-1, RAS-related C3 99.5 6E-14 2E-18 136.5 6.9 122 269-407 152-274 (332)
144 1nrj_B SR-beta, signal recogni 99.5 3.7E-13 1.3E-17 123.5 11.8 120 272-409 12-137 (218)
145 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 9.5E-14 3.2E-18 141.7 8.4 101 269-369 17-127 (392)
146 3dpu_A RAB family protein; roc 99.4 3E-13 1E-17 142.5 11.9 121 272-409 41-167 (535)
147 2cxx_A Probable GTP-binding pr 99.4 2.2E-13 7.4E-18 121.4 9.2 116 273-408 2-138 (190)
148 2qpt_A EH domain-containing pr 99.4 1.1E-13 3.7E-18 147.0 8.4 134 270-410 63-236 (550)
149 4dkx_A RAS-related protein RAB 99.4 2.4E-13 8.1E-18 127.5 9.4 120 273-408 14-134 (216)
150 3sjy_A Translation initiation 99.4 3.3E-13 1.1E-17 137.5 10.4 126 273-409 9-146 (403)
151 3j2k_7 ERF3, eukaryotic polype 99.4 4.4E-13 1.5E-17 138.4 11.3 116 271-406 16-169 (439)
152 2g3y_A GTP-binding protein GEM 99.4 2.9E-13 1E-17 126.3 8.0 121 272-407 37-160 (211)
153 3t34_A Dynamin-related protein 99.4 6.8E-13 2.3E-17 132.9 11.1 136 270-409 32-220 (360)
154 2j69_A Bacterial dynamin-like 99.4 3.5E-13 1.2E-17 146.7 9.4 129 270-407 67-245 (695)
155 2cjw_A GTP-binding protein GEM 99.4 4.1E-13 1.4E-17 122.1 7.9 122 273-407 7-129 (192)
156 2f9l_A RAB11B, member RAS onco 99.4 6.8E-13 2.3E-17 120.6 9.3 121 272-407 5-125 (199)
157 3tr5_A RF-3, peptide chain rel 99.4 2.6E-13 9E-18 143.4 7.5 120 268-408 9-150 (528)
158 1wb1_A Translation elongation 99.4 5.8E-13 2E-17 139.1 9.2 114 273-407 20-140 (482)
159 3izq_1 HBS1P, elongation facto 99.4 5E-13 1.7E-17 143.5 8.3 118 270-406 165-319 (611)
160 3p26_A Elongation factor 1 alp 99.4 7.6E-13 2.6E-17 138.0 9.4 119 270-407 31-186 (483)
161 2zej_A Dardarin, leucine-rich 99.4 6.3E-13 2.2E-17 119.3 6.2 123 273-408 3-128 (184)
162 3izy_P Translation initiation 99.3 1.4E-13 4.9E-18 145.6 2.0 116 272-407 4-119 (537)
163 2x2e_A Dynamin-1; nitration, h 99.3 1.8E-12 6.2E-17 129.7 9.8 133 272-409 31-214 (353)
164 2c78_A Elongation factor TU-A; 99.3 2.2E-12 7.5E-17 131.4 9.6 115 272-407 11-143 (405)
165 1d2e_A Elongation factor TU (E 99.3 3.1E-12 1.1E-16 130.1 10.5 114 273-407 4-134 (397)
166 1oix_A RAS-related protein RAB 99.3 2.2E-12 7.5E-17 117.0 8.1 123 270-407 27-149 (191)
167 1zun_B Sulfate adenylate trans 99.3 4.7E-12 1.6E-16 130.2 11.5 118 270-407 22-172 (434)
168 3zvr_A Dynamin-1; hydrolase, D 99.3 3.6E-12 1.2E-16 139.5 10.8 135 271-410 50-235 (772)
169 1zo1_I IF2, translation initia 99.3 1.3E-12 4.4E-17 137.2 5.9 115 272-407 4-118 (501)
170 2h5e_A Peptide chain release f 99.3 8.4E-12 2.9E-16 131.9 12.0 120 268-408 9-150 (529)
171 1s0u_A EIF-2-gamma, translatio 99.3 6.6E-12 2.2E-16 128.1 10.7 125 272-408 8-151 (408)
172 2xex_A Elongation factor G; GT 99.3 4.2E-12 1.4E-16 138.2 9.8 117 271-408 9-143 (693)
173 1kk1_A EIF2gamma; initiation o 99.3 3.4E-12 1.2E-16 130.1 8.3 125 272-408 10-153 (410)
174 2ywe_A GTP-binding protein LEP 99.3 7.9E-12 2.7E-16 133.9 10.6 123 270-408 4-141 (600)
175 1dar_A EF-G, elongation factor 99.3 9.8E-12 3.4E-16 135.2 11.4 118 270-408 10-145 (691)
176 3ec1_A YQEH GTPase; atnos1, at 99.3 2.1E-13 7.2E-18 137.8 -1.9 120 272-408 162-290 (369)
177 1jny_A EF-1-alpha, elongation 99.3 4.4E-12 1.5E-16 130.5 7.8 117 272-407 6-159 (435)
178 3cb4_D GTP-binding protein LEP 99.3 1E-11 3.5E-16 133.0 10.1 122 271-408 3-139 (599)
179 2elf_A Protein translation elo 99.3 6.3E-12 2.2E-16 127.1 7.7 101 274-404 23-125 (370)
180 1f60_A Elongation factor EEF1A 99.2 4.1E-12 1.4E-16 131.8 6.2 114 273-406 8-159 (458)
181 1r5b_A Eukaryotic peptide chai 99.2 1E-11 3.6E-16 129.0 9.0 117 270-406 41-195 (467)
182 1pui_A ENGB, probable GTP-bind 99.2 7.8E-12 2.7E-16 113.8 6.9 123 268-407 22-152 (210)
183 3c5h_A Glucocorticoid receptor 99.2 6.8E-12 2.3E-16 119.8 6.5 135 272-407 19-213 (255)
184 3mca_A HBS1, elongation factor 99.2 6.8E-13 2.3E-17 142.0 -1.2 116 270-406 175-329 (592)
185 3r7w_B Gtpase2, GTP-binding pr 99.2 2.9E-11 9.8E-16 120.7 9.5 118 274-408 1-122 (331)
186 3h2y_A GTPase family protein; 99.2 1.2E-12 4E-17 132.4 -1.9 121 272-409 160-290 (368)
187 2rdo_7 EF-G, elongation factor 99.2 9.8E-11 3.3E-15 127.6 12.1 125 270-408 8-150 (704)
188 1g7s_A Translation initiation 99.1 5.4E-11 1.8E-15 127.3 8.2 121 273-406 6-136 (594)
189 3avx_A Elongation factor TS, e 99.1 1.2E-10 4.2E-15 131.7 11.2 117 271-408 295-428 (1289)
190 3vqt_A RF-3, peptide chain rel 99.1 2.3E-10 7.8E-15 121.4 12.5 123 265-408 24-168 (548)
191 2qag_A Septin-2, protein NEDD5 99.1 6.4E-11 2.2E-15 119.2 7.7 127 273-409 38-191 (361)
192 2www_A Methylmalonic aciduria 99.1 2E-11 6.8E-16 122.4 3.4 115 272-406 74-226 (349)
193 1n0u_A EF-2, elongation factor 99.1 6.5E-11 2.2E-15 131.4 6.3 124 270-406 17-164 (842)
194 2dy1_A Elongation factor G; tr 99.0 7.3E-10 2.5E-14 120.0 10.7 116 269-405 6-139 (665)
195 3j25_A Tetracycline resistance 99.0 5.2E-10 1.8E-14 120.6 8.4 116 272-408 2-135 (638)
196 3p32_A Probable GTPase RV1496/ 99.0 2.3E-10 7.7E-15 114.7 4.8 61 327-407 172-232 (355)
197 2p67_A LAO/AO transport system 98.9 4.9E-10 1.7E-14 111.7 4.2 119 269-407 53-209 (341)
198 4fn5_A EF-G 1, elongation fact 98.9 6.3E-09 2.2E-13 113.4 12.9 126 269-408 10-153 (709)
199 1yrb_A ATP(GTP)binding protein 98.8 4.6E-09 1.6E-13 99.1 6.4 78 327-408 109-187 (262)
200 2qm8_A GTPase/ATPase; G protei 98.8 2.9E-09 1E-13 106.2 4.5 120 267-406 50-207 (337)
201 2qag_C Septin-7; cell cycle, c 98.7 3.2E-08 1.1E-12 101.6 9.0 124 273-408 32-183 (418)
202 2wsm_A Hydrogenase expression/ 98.6 3.4E-08 1.1E-12 90.6 6.4 118 269-406 27-168 (221)
203 3sop_A Neuronal-specific septi 98.6 4.6E-08 1.6E-12 94.6 7.2 125 273-409 3-157 (270)
204 1puj_A YLQF, conserved hypothe 98.6 2.4E-08 8.4E-13 97.1 5.0 59 272-341 120-179 (282)
205 1f5n_A Interferon-induced guan 98.6 6.4E-08 2.2E-12 103.4 7.1 100 272-377 38-140 (592)
206 2qag_B Septin-6, protein NEDD5 98.5 9.5E-08 3.2E-12 98.4 6.8 131 267-410 35-194 (427)
207 2qnr_A Septin-2, protein NEDD5 98.5 1E-07 3.5E-12 93.4 5.9 124 273-408 19-171 (301)
208 2j37_W Signal recognition part 98.4 6.7E-07 2.3E-11 93.9 9.7 124 272-408 101-256 (504)
209 3cnl_A YLQF, putative uncharac 98.3 2.7E-07 9.1E-12 88.8 4.1 58 273-341 100-158 (262)
210 3szr_A Interferon-induced GTP- 98.2 3.7E-06 1.3E-10 90.1 9.6 77 327-408 147-230 (608)
211 2v3c_C SRP54, signal recogniti 98.1 5.8E-06 2E-10 85.2 9.3 69 327-407 181-253 (432)
212 1tq4_A IIGP1, interferon-induc 98.1 6.6E-06 2.3E-10 84.3 9.0 111 274-405 71-188 (413)
213 2hf9_A Probable hydrogenase ni 97.9 5.3E-06 1.8E-10 76.0 3.7 26 270-295 36-61 (226)
214 3dm5_A SRP54, signal recogniti 97.8 5.3E-05 1.8E-09 78.2 9.1 70 327-407 183-254 (443)
215 3q5d_A Atlastin-1; G protein, 97.5 8.4E-05 2.9E-09 76.9 6.4 69 272-340 67-153 (447)
216 3kl4_A SRP54, signal recogniti 97.5 5.5E-05 1.9E-09 77.9 4.9 70 327-406 180-252 (433)
217 3l82_B F-box only protein 4; T 97.5 0.00014 4.8E-09 68.3 6.8 92 328-420 97-191 (227)
218 1cip_A Protein (guanine nucleo 97.5 4.2E-05 1.4E-09 76.7 2.9 72 327-405 193-273 (353)
219 1azs_C GS-alpha; complex (lyas 97.3 0.00014 4.8E-09 74.2 4.8 71 327-405 217-297 (402)
220 4fid_A G protein alpha subunit 97.3 0.00016 5.6E-09 72.2 4.9 72 327-406 161-242 (340)
221 1puj_A YLQF, conserved hypothe 97.2 0.00024 8.1E-09 68.8 5.1 63 331-407 3-65 (282)
222 1u0l_A Probable GTPase ENGC; p 97.2 0.00039 1.3E-08 67.7 6.3 67 328-408 64-131 (301)
223 1zcb_A G alpha I/13; GTP-bindi 97.2 9E-05 3.1E-09 74.5 1.8 71 327-405 201-281 (362)
224 1j8m_F SRP54, signal recogniti 97.2 0.00094 3.2E-08 65.2 8.9 70 327-406 181-253 (297)
225 2xtz_A Guanine nucleotide-bind 97.1 0.00016 5.3E-09 72.6 2.3 71 327-405 183-263 (354)
226 3ney_A 55 kDa erythrocyte memb 97.1 0.00021 7.1E-09 66.0 3.0 43 274-316 21-65 (197)
227 3ohm_A Guanine nucleotide-bind 97.0 0.00025 8.6E-09 70.4 3.1 73 327-406 167-248 (327)
228 3l2o_B F-box only protein 4; s 97.0 0.00069 2.4E-08 66.4 5.4 76 345-420 198-276 (312)
229 4dzz_A Plasmid partitioning pr 96.9 0.0013 4.5E-08 58.8 6.7 68 327-405 76-143 (206)
230 2yv5_A YJEQ protein; hydrolase 96.8 0.0014 4.9E-08 63.8 6.1 24 272-296 165-188 (302)
231 1t9h_A YLOQ, probable GTPase E 96.8 0.00031 1.1E-08 69.1 1.2 26 271-296 172-197 (307)
232 2xxa_A Signal recognition part 96.8 0.0032 1.1E-07 64.6 8.8 69 327-407 184-255 (433)
233 3e70_C DPA, signal recognition 96.7 0.0014 4.6E-08 65.0 5.6 24 272-295 129-152 (328)
234 2rcn_A Probable GTPase ENGC; Y 96.7 0.00088 3E-08 67.3 4.2 57 273-340 216-281 (358)
235 2px0_A Flagellar biosynthesis 96.6 0.0037 1.3E-07 60.8 7.5 70 327-407 183-254 (296)
236 1rj9_A FTSY, signal recognitio 96.6 0.0046 1.6E-07 60.5 8.1 21 274-294 104-124 (304)
237 2yv5_A YJEQ protein; hydrolase 96.5 0.0026 8.8E-08 62.0 5.6 50 354-408 76-126 (302)
238 3cnl_A YLQF, putative uncharac 96.5 0.00063 2.2E-08 65.1 1.2 58 335-408 5-62 (262)
239 3ec1_A YQEH GTPase; atnos1, at 96.5 0.0013 4.5E-08 65.9 3.3 52 349-408 62-114 (369)
240 1vma_A Cell division protein F 96.4 0.0025 8.7E-08 62.5 5.2 23 272-294 104-126 (306)
241 1u0l_A Probable GTPase ENGC; p 96.4 0.0029 9.8E-08 61.5 5.0 25 272-296 169-193 (301)
242 2yhs_A FTSY, cell division pro 96.3 0.0039 1.3E-07 65.2 6.2 23 272-294 293-315 (503)
243 3h2y_A GTPase family protein; 96.2 0.0021 7.2E-08 64.5 3.3 52 349-408 60-112 (368)
244 1zu4_A FTSY; GTPase, signal re 96.1 0.0076 2.6E-07 59.3 6.4 25 270-294 103-127 (320)
245 1kgd_A CASK, peripheral plasma 95.8 0.0035 1.2E-07 55.8 2.5 41 274-314 7-49 (180)
246 1ex7_A Guanylate kinase; subst 95.8 0.0047 1.6E-07 56.3 3.2 43 275-317 4-48 (186)
247 1lvg_A Guanylate kinase, GMP k 95.5 0.0041 1.4E-07 56.4 1.7 23 274-296 6-28 (198)
248 2ffh_A Protein (FFH); SRP54, s 95.4 0.012 4.1E-07 60.3 4.7 22 273-294 99-120 (425)
249 3tau_A Guanylate kinase, GMP k 95.2 0.012 4E-07 53.6 3.7 40 274-313 10-51 (208)
250 3a00_A Guanylate kinase, GMP k 95.1 0.0062 2.1E-07 54.3 1.5 40 275-314 4-45 (186)
251 1t9h_A YLOQ, probable GTPase E 95.0 0.028 9.6E-07 55.1 5.9 51 354-408 83-133 (307)
252 1ye8_A Protein THEP1, hypothet 94.9 0.0098 3.3E-07 53.4 2.2 23 274-296 2-24 (178)
253 2qor_A Guanylate kinase; phosp 94.8 0.012 4.2E-07 53.1 2.6 40 274-313 14-55 (204)
254 1z6g_A Guanylate kinase; struc 94.6 0.011 3.8E-07 54.4 1.9 30 267-296 18-47 (218)
255 3tr0_A Guanylate kinase, GMP k 94.5 0.013 4.5E-07 52.2 2.0 24 274-297 9-32 (205)
256 1zp6_A Hypothetical protein AT 94.5 0.013 4.4E-07 51.8 1.9 22 274-295 11-32 (191)
257 1znw_A Guanylate kinase, GMP k 94.4 0.014 4.9E-07 52.8 2.0 25 273-297 21-45 (207)
258 1s96_A Guanylate kinase, GMP k 94.3 0.013 4.5E-07 54.4 1.6 36 274-309 18-56 (219)
259 2v9p_A Replication protein E1; 94.1 0.018 6.3E-07 56.4 2.4 30 266-295 120-149 (305)
260 1kag_A SKI, shikimate kinase I 94.1 0.017 5.8E-07 50.1 1.9 23 273-295 5-27 (173)
261 3c8u_A Fructokinase; YP_612366 94.1 0.017 5.8E-07 52.4 1.9 22 274-295 24-45 (208)
262 3lnc_A Guanylate kinase, GMP k 94.0 0.011 3.9E-07 54.3 0.4 28 269-296 24-52 (231)
263 1htw_A HI0065; nucleotide-bind 93.8 0.021 7.3E-07 50.3 1.9 27 270-296 31-57 (158)
264 3tif_A Uncharacterized ABC tra 93.7 0.016 5.4E-07 54.3 0.8 29 268-296 27-55 (235)
265 2pcj_A ABC transporter, lipopr 93.6 0.014 4.8E-07 54.2 0.4 30 267-296 25-54 (224)
266 2bdt_A BH3686; alpha-beta prot 93.6 0.025 8.5E-07 50.1 2.0 21 274-294 4-24 (189)
267 2j41_A Guanylate kinase; GMP, 93.6 0.024 8.4E-07 50.4 1.9 24 273-296 7-30 (207)
268 3vaa_A Shikimate kinase, SK; s 93.6 0.026 8.8E-07 50.7 2.1 31 265-295 18-48 (199)
269 4gp7_A Metallophosphoesterase; 93.6 0.015 5.2E-07 51.2 0.5 20 274-293 11-30 (171)
270 1g6h_A High-affinity branched- 93.5 0.017 5.9E-07 54.7 0.9 30 267-296 28-57 (257)
271 1mv5_A LMRA, multidrug resista 93.3 0.019 6.7E-07 53.9 0.9 29 268-296 24-52 (243)
272 1b0u_A Histidine permease; ABC 93.3 0.02 6.7E-07 54.6 0.9 30 267-296 27-56 (262)
273 2cbz_A Multidrug resistance-as 93.3 0.019 6.7E-07 53.8 0.8 29 268-296 27-55 (237)
274 2pze_A Cystic fibrosis transme 93.3 0.02 6.7E-07 53.4 0.8 30 267-296 29-58 (229)
275 4eun_A Thermoresistant glucoki 93.3 0.03 1E-06 50.3 2.0 22 274-295 31-52 (200)
276 4g1u_C Hemin import ATP-bindin 93.2 0.02 6.9E-07 54.7 0.8 30 267-296 32-61 (266)
277 2ff7_A Alpha-hemolysin translo 93.2 0.02 6.8E-07 54.1 0.8 30 267-296 30-59 (247)
278 2onk_A Molybdate/tungstate ABC 93.2 0.021 7.1E-07 53.8 0.8 30 266-296 19-48 (240)
279 1sgw_A Putative ABC transporte 93.2 0.019 6.7E-07 53.1 0.6 30 267-296 30-59 (214)
280 3gfo_A Cobalt import ATP-bindi 93.2 0.021 7.1E-07 55.0 0.8 30 267-296 29-58 (275)
281 2olj_A Amino acid ABC transpor 93.2 0.021 7.3E-07 54.5 0.9 29 268-296 46-74 (263)
282 2jeo_A Uridine-cytidine kinase 93.2 0.031 1.1E-06 52.0 2.0 31 265-295 18-48 (245)
283 1ji0_A ABC transporter; ATP bi 93.1 0.022 7.6E-07 53.4 0.8 29 268-296 28-56 (240)
284 3asz_A Uridine kinase; cytidin 93.1 0.03 1E-06 50.4 1.6 22 274-295 8-29 (211)
285 2d2e_A SUFC protein; ABC-ATPas 93.0 0.024 8.1E-07 53.6 0.9 28 268-295 25-52 (250)
286 3b85_A Phosphate starvation-in 93.0 0.033 1.1E-06 51.2 1.9 26 270-295 20-45 (208)
287 2zu0_C Probable ATP-dependent 93.0 0.025 8.5E-07 54.0 1.0 27 269-295 43-69 (267)
288 2rcn_A Probable GTPase ENGC; Y 93.0 0.095 3.2E-06 52.5 5.3 60 355-419 128-193 (358)
289 1np6_A Molybdopterin-guanine d 93.0 0.037 1.3E-06 49.6 2.1 24 272-295 6-29 (174)
290 2qi9_C Vitamin B12 import ATP- 92.9 0.024 8.2E-07 53.7 0.8 30 267-296 21-50 (249)
291 2ghi_A Transport protein; mult 92.9 0.024 8.2E-07 53.9 0.8 30 267-296 41-70 (260)
292 2ihy_A ABC transporter, ATP-bi 92.9 0.024 8.2E-07 54.6 0.8 29 268-296 43-71 (279)
293 1vpl_A ABC transporter, ATP-bi 92.9 0.025 8.5E-07 53.8 0.9 30 267-296 36-65 (256)
294 2bbw_A Adenylate kinase 4, AK4 92.8 0.041 1.4E-06 51.1 2.3 21 273-293 28-48 (246)
295 2pt7_A CAG-ALFA; ATPase, prote 92.8 0.044 1.5E-06 54.0 2.5 32 265-296 164-195 (330)
296 1knq_A Gluconate kinase; ALFA/ 92.8 0.039 1.3E-06 48.0 2.0 22 274-295 10-31 (175)
297 2ehv_A Hypothetical protein PH 92.8 0.041 1.4E-06 50.2 2.2 21 273-293 31-51 (251)
298 2ixe_A Antigen peptide transpo 92.8 0.026 8.9E-07 54.1 0.8 28 269-296 42-69 (271)
299 2gza_A Type IV secretion syste 92.8 0.045 1.5E-06 54.5 2.6 33 264-296 167-199 (361)
300 3cwq_A Para family chromosome 92.7 0.15 5E-06 46.4 5.8 78 327-418 68-149 (209)
301 1cke_A CK, MSSA, protein (cyti 92.7 0.042 1.4E-06 49.8 2.0 23 273-295 6-28 (227)
302 2nq2_C Hypothetical ABC transp 92.6 0.027 9.3E-07 53.4 0.8 29 268-296 27-55 (253)
303 3lw7_A Adenylate kinase relate 92.6 0.045 1.5E-06 46.6 2.1 19 274-292 3-21 (179)
304 4a74_A DNA repair and recombin 92.6 0.038 1.3E-06 49.8 1.6 21 274-294 27-47 (231)
305 2yz2_A Putative ABC transporte 92.5 0.03 1E-06 53.4 0.8 29 268-296 29-57 (266)
306 2eyu_A Twitching motility prot 92.5 0.045 1.5E-06 52.1 2.0 22 274-295 27-48 (261)
307 3kb2_A SPBC2 prophage-derived 92.5 0.05 1.7E-06 46.7 2.1 22 274-295 3-24 (173)
308 2i3b_A HCR-ntpase, human cance 92.4 0.048 1.6E-06 49.4 2.0 22 274-295 3-24 (189)
309 2if2_A Dephospho-COA kinase; a 92.4 0.046 1.6E-06 48.8 1.8 21 274-294 3-23 (204)
310 4ido_A Atlastin-1; GTPase, GTP 92.4 0.26 9E-06 50.8 7.7 22 272-293 67-88 (457)
311 3ec2_A DNA replication protein 92.4 0.05 1.7E-06 47.7 2.1 24 272-295 38-61 (180)
312 3uie_A Adenylyl-sulfate kinase 92.3 0.049 1.7E-06 48.9 2.0 22 274-295 27-48 (200)
313 2pjz_A Hypothetical protein ST 92.3 0.032 1.1E-06 53.3 0.8 29 267-296 26-54 (263)
314 1ly1_A Polynucleotide kinase; 92.2 0.058 2E-06 46.6 2.2 21 274-294 4-24 (181)
315 1jjv_A Dephospho-COA kinase; P 92.1 0.058 2E-06 48.3 2.2 21 274-294 4-24 (206)
316 3nh6_A ATP-binding cassette SU 92.0 0.025 8.4E-07 55.4 -0.4 28 269-296 77-104 (306)
317 3t61_A Gluconokinase; PSI-biol 91.9 0.059 2E-06 48.2 2.0 23 273-295 19-41 (202)
318 3aez_A Pantothenate kinase; tr 91.7 0.06 2.1E-06 52.6 2.0 23 272-294 90-112 (312)
319 1lw7_A Transcriptional regulat 91.6 0.05 1.7E-06 53.9 1.3 25 272-296 170-194 (365)
320 3tui_C Methionine import ATP-b 91.6 0.046 1.6E-06 54.9 1.0 29 268-296 50-78 (366)
321 2oap_1 GSPE-2, type II secreti 91.6 0.076 2.6E-06 55.5 2.7 32 265-296 253-284 (511)
322 3cm0_A Adenylate kinase; ATP-b 91.5 0.074 2.5E-06 46.5 2.2 22 273-294 5-26 (186)
323 2jaq_A Deoxyguanosine kinase; 91.5 0.076 2.6E-06 46.9 2.2 21 274-294 2-22 (205)
324 3h4m_A Proteasome-activating n 91.5 0.23 7.7E-06 46.6 5.6 24 272-295 51-74 (285)
325 1qhx_A CPT, protein (chloramph 91.4 0.077 2.6E-06 46.1 2.2 22 274-295 5-26 (178)
326 3nwj_A ATSK2; P loop, shikimat 91.4 0.083 2.8E-06 50.1 2.5 28 267-294 40-70 (250)
327 2npi_A Protein CLP1; CLP1-PCF1 91.3 0.065 2.2E-06 55.3 1.8 31 265-295 131-161 (460)
328 2kjq_A DNAA-related protein; s 91.3 0.067 2.3E-06 46.3 1.6 22 274-295 38-59 (149)
329 1via_A Shikimate kinase; struc 91.3 0.077 2.6E-06 46.3 2.0 23 273-295 5-27 (175)
330 2f1r_A Molybdopterin-guanine d 91.1 0.038 1.3E-06 49.4 -0.2 23 273-295 3-25 (171)
331 2bbs_A Cystic fibrosis transme 91.1 0.046 1.6E-06 53.0 0.5 29 268-296 60-88 (290)
332 1nks_A Adenylate kinase; therm 91.0 0.083 2.8E-06 46.1 2.0 22 274-295 3-24 (194)
333 1kht_A Adenylate kinase; phosp 91.0 0.09 3.1E-06 45.9 2.2 21 274-294 5-25 (192)
334 2qt1_A Nicotinamide riboside k 91.0 0.079 2.7E-06 47.5 1.8 23 273-295 22-44 (207)
335 1z47_A CYSA, putative ABC-tran 90.9 0.057 2E-06 54.0 0.9 30 267-296 36-65 (355)
336 2yyz_A Sugar ABC transporter, 90.8 0.059 2E-06 53.9 0.9 30 267-296 24-53 (359)
337 3ea0_A ATPase, para family; al 90.8 0.5 1.7E-05 42.9 7.2 69 327-407 119-187 (245)
338 2qz4_A Paraplegin; AAA+, SPG7, 90.8 0.39 1.3E-05 44.1 6.5 23 273-295 40-62 (262)
339 2it1_A 362AA long hypothetical 90.7 0.063 2.2E-06 53.8 1.0 30 267-296 24-53 (362)
340 2rhm_A Putative kinase; P-loop 90.7 0.087 3E-06 46.2 1.8 22 273-294 6-27 (193)
341 3rlf_A Maltose/maltodextrin im 90.7 0.064 2.2E-06 54.2 1.0 30 267-296 24-53 (381)
342 3fvq_A Fe(3+) IONS import ATP- 90.7 0.056 1.9E-06 54.1 0.6 29 268-296 26-54 (359)
343 3jvv_A Twitching mobility prot 90.7 0.087 3E-06 52.5 2.0 22 274-295 125-146 (356)
344 2x8a_A Nuclear valosin-contain 90.6 0.091 3.1E-06 50.1 2.0 22 274-295 46-67 (274)
345 3fb4_A Adenylate kinase; psych 90.6 0.11 3.6E-06 46.8 2.4 21 274-294 2-22 (216)
346 2v54_A DTMP kinase, thymidylat 90.5 0.095 3.3E-06 46.4 1.9 23 273-295 5-27 (204)
347 1v43_A Sugar-binding transport 90.5 0.067 2.3E-06 53.8 1.0 30 267-296 32-61 (372)
348 1g29_1 MALK, maltose transport 90.5 0.065 2.2E-06 53.8 0.9 30 267-296 24-53 (372)
349 1nij_A Hypothetical protein YJ 90.5 0.074 2.5E-06 51.8 1.2 25 272-296 4-28 (318)
350 1y63_A LMAJ004144AAA protein; 90.5 0.086 2.9E-06 46.7 1.6 23 273-295 11-33 (184)
351 1ixz_A ATP-dependent metallopr 90.5 0.099 3.4E-06 48.4 2.0 22 274-295 51-72 (254)
352 3dl0_A Adenylate kinase; phosp 90.4 0.11 3.8E-06 46.7 2.4 22 274-295 2-23 (216)
353 2bwj_A Adenylate kinase 5; pho 90.3 0.12 4.2E-06 45.5 2.4 27 269-295 9-35 (199)
354 1sxj_E Activator 1 40 kDa subu 90.3 0.49 1.7E-05 45.6 6.9 22 273-294 37-58 (354)
355 1sq5_A Pantothenate kinase; P- 90.2 0.12 3.9E-06 50.1 2.4 23 273-295 81-103 (308)
356 2plr_A DTMP kinase, probable t 90.1 0.12 4.1E-06 45.9 2.2 23 273-295 5-27 (213)
357 2ewv_A Twitching motility prot 90.1 0.1 3.5E-06 52.2 1.9 24 272-295 136-159 (372)
358 3n70_A Transport activator; si 90.1 0.45 1.5E-05 40.3 5.8 24 273-296 25-48 (145)
359 3trf_A Shikimate kinase, SK; a 90.0 0.13 4.4E-06 45.0 2.3 23 273-295 6-28 (185)
360 2c95_A Adenylate kinase 1; tra 90.0 0.13 4.3E-06 45.2 2.2 25 270-294 7-31 (196)
361 2pt5_A Shikimate kinase, SK; a 90.0 0.14 4.7E-06 44.0 2.4 22 274-295 2-23 (168)
362 1rz3_A Hypothetical protein rb 90.0 0.1 3.5E-06 46.9 1.7 22 273-294 23-44 (201)
363 2w0m_A SSO2452; RECA, SSPF, un 90.0 0.11 3.9E-06 46.4 2.0 21 274-294 25-45 (235)
364 2yvu_A Probable adenylyl-sulfa 90.0 0.12 4.1E-06 45.5 2.0 22 274-295 15-36 (186)
365 4e22_A Cytidylate kinase; P-lo 89.9 0.12 4.2E-06 48.4 2.2 21 273-293 28-48 (252)
366 2pez_A Bifunctional 3'-phospho 89.9 0.12 4.1E-06 45.2 2.0 22 274-295 7-28 (179)
367 4b4t_L 26S protease subunit RP 89.9 0.48 1.6E-05 48.6 6.8 23 273-295 216-238 (437)
368 1tev_A UMP-CMP kinase; ploop, 89.9 0.13 4.4E-06 44.9 2.2 21 274-294 5-25 (196)
369 3b9p_A CG5977-PA, isoform A; A 89.8 0.95 3.3E-05 42.5 8.4 23 273-295 55-77 (297)
370 1aky_A Adenylate kinase; ATP:A 89.7 0.14 4.7E-06 46.4 2.3 23 273-295 5-27 (220)
371 3gd7_A Fusion complex of cysti 89.6 0.077 2.6E-06 53.7 0.6 29 268-296 43-71 (390)
372 3d31_A Sulfate/molybdate ABC t 89.6 0.06 2E-06 53.6 -0.3 29 268-296 22-50 (348)
373 1in4_A RUVB, holliday junction 89.5 0.16 5.5E-06 49.5 2.8 23 273-295 52-74 (334)
374 2pbr_A DTMP kinase, thymidylat 89.5 0.13 4.5E-06 44.9 2.0 21 274-294 2-22 (195)
375 1yqt_A RNAse L inhibitor; ATP- 89.5 0.16 5.3E-06 53.4 2.8 23 274-296 49-71 (538)
376 1xjc_A MOBB protein homolog; s 89.4 0.15 5E-06 45.7 2.2 24 272-295 4-27 (169)
377 1iy2_A ATP-dependent metallopr 89.4 0.13 4.5E-06 48.5 2.0 23 274-296 75-97 (278)
378 3iij_A Coilin-interacting nucl 89.4 0.15 5E-06 44.6 2.2 22 273-294 12-33 (180)
379 1p9r_A General secretion pathw 89.4 0.13 4.3E-06 52.5 2.0 22 274-295 169-190 (418)
380 3b9q_A Chloroplast SRP recepto 89.2 0.14 4.7E-06 49.8 2.0 27 269-295 97-123 (302)
381 2z0h_A DTMP kinase, thymidylat 89.2 0.14 4.9E-06 44.9 2.0 22 274-295 2-23 (197)
382 3kta_A Chromosome segregation 89.2 0.14 4.6E-06 44.8 1.8 22 274-295 28-49 (182)
383 3k9g_A PF-32 protein; ssgcid, 89.1 1.1 3.7E-05 41.6 8.1 65 327-404 145-209 (267)
384 1oxx_K GLCV, glucose, ABC tran 89.1 0.053 1.8E-06 54.1 -1.0 30 267-296 26-55 (353)
385 1gtv_A TMK, thymidylate kinase 89.1 0.059 2E-06 48.2 -0.7 22 274-295 2-23 (214)
386 2wwf_A Thymidilate kinase, put 88.9 0.14 4.9E-06 45.6 1.8 22 273-294 11-32 (212)
387 4b4t_H 26S protease regulatory 88.9 0.83 2.9E-05 47.2 7.7 23 273-295 244-266 (467)
388 1e4v_A Adenylate kinase; trans 88.9 0.15 5.2E-06 46.0 2.0 21 274-294 2-22 (214)
389 3a4m_A L-seryl-tRNA(SEC) kinas 88.9 0.17 5.7E-06 47.6 2.3 23 273-295 5-27 (260)
390 2cdn_A Adenylate kinase; phosp 88.8 0.17 5.8E-06 45.1 2.2 22 274-295 22-43 (201)
391 2vp4_A Deoxynucleoside kinase; 88.8 0.13 4.3E-06 47.4 1.4 22 274-295 22-43 (230)
392 1nn5_A Similar to deoxythymidy 88.8 0.15 5E-06 45.5 1.8 22 273-294 10-31 (215)
393 3tqc_A Pantothenate kinase; bi 88.8 0.15 5.3E-06 50.1 2.0 22 274-295 94-115 (321)
394 1e6c_A Shikimate kinase; phosp 88.8 0.18 6.1E-06 43.4 2.2 22 274-295 4-25 (173)
395 1zd8_A GTP:AMP phosphotransfer 88.8 0.16 5.4E-06 46.3 2.0 23 273-295 8-30 (227)
396 3b5x_A Lipid A export ATP-bind 88.7 0.12 4E-06 54.7 1.2 30 267-296 364-393 (582)
397 1cr0_A DNA primase/helicase; R 88.7 0.14 4.7E-06 48.7 1.6 26 270-295 33-58 (296)
398 2iyv_A Shikimate kinase, SK; t 88.6 0.17 5.9E-06 44.2 2.1 22 273-294 3-24 (184)
399 1d2n_A N-ethylmaleimide-sensit 88.5 0.87 3E-05 42.4 7.0 23 273-295 65-87 (272)
400 2vli_A Antibiotic resistance p 88.5 0.15 5E-06 44.4 1.5 23 273-295 6-28 (183)
401 3ozx_A RNAse L inhibitor; ATP 88.3 0.17 5.9E-06 53.2 2.2 23 274-296 27-49 (538)
402 1uf9_A TT1252 protein; P-loop, 88.3 0.17 5.7E-06 44.7 1.8 23 273-295 9-31 (203)
403 1qf9_A UMP/CMP kinase, protein 88.3 0.17 5.8E-06 44.1 1.8 23 273-295 7-29 (194)
404 4b4t_K 26S protease regulatory 88.2 0.94 3.2E-05 46.3 7.5 22 274-295 208-229 (428)
405 1n0w_A DNA repair protein RAD5 88.2 0.18 6.3E-06 45.7 2.0 21 274-294 26-46 (243)
406 3qf4_B Uncharacterized ABC tra 88.2 0.11 3.9E-06 55.0 0.7 30 267-296 376-405 (598)
407 2obl_A ESCN; ATPase, hydrolase 88.2 0.13 4.6E-06 50.9 1.2 30 267-296 66-95 (347)
408 2yl4_A ATP-binding cassette SU 88.1 0.11 3.8E-06 54.9 0.6 29 268-296 366-394 (595)
409 1m7g_A Adenylylsulfate kinase; 88.1 0.22 7.5E-06 44.9 2.5 26 269-294 22-47 (211)
410 1vht_A Dephospho-COA kinase; s 88.0 0.19 6.4E-06 45.4 2.0 22 273-294 5-26 (218)
411 3b60_A Lipid A export ATP-bind 87.9 0.11 3.9E-06 54.7 0.5 30 267-296 364-393 (582)
412 2cvh_A DNA repair and recombin 87.8 0.2 6.9E-06 44.7 2.0 21 274-294 22-42 (220)
413 1svm_A Large T antigen; AAA+ f 87.7 0.21 7.1E-06 50.2 2.3 25 271-295 168-192 (377)
414 1xwi_A SKD1 protein; VPS4B, AA 87.7 1.4 4.8E-05 42.6 8.1 23 273-295 46-68 (322)
415 1ukz_A Uridylate kinase; trans 87.6 0.24 8.2E-06 44.0 2.4 23 273-295 16-38 (203)
416 3bk7_A ABC transporter ATP-bin 87.6 0.23 8E-06 52.9 2.7 23 274-296 119-141 (607)
417 1jbk_A CLPB protein; beta barr 87.6 0.22 7.4E-06 42.6 2.0 23 273-295 44-66 (195)
418 1zak_A Adenylate kinase; ATP:A 87.6 0.18 6.2E-06 45.7 1.6 23 273-295 6-28 (222)
419 1qhl_A Protein (cell division 87.6 0.1 3.6E-06 48.8 -0.1 22 275-296 30-51 (227)
420 1odf_A YGR205W, hypothetical 3 87.5 0.21 7.2E-06 48.2 2.0 22 273-294 32-53 (290)
421 3be4_A Adenylate kinase; malar 87.4 0.24 8.2E-06 44.9 2.3 23 273-295 6-28 (217)
422 3j16_B RLI1P; ribosome recycli 87.4 0.22 7.4E-06 53.2 2.3 23 274-296 105-127 (608)
423 2xb4_A Adenylate kinase; ATP-b 87.4 0.25 8.5E-06 45.2 2.4 22 274-295 2-23 (223)
424 4b4t_I 26S protease regulatory 87.3 1.2 4E-05 45.7 7.5 22 274-295 218-239 (437)
425 1zuh_A Shikimate kinase; alpha 87.2 0.25 8.6E-06 42.5 2.2 23 273-295 8-30 (168)
426 1gvn_B Zeta; postsegregational 87.1 0.23 7.9E-06 47.6 2.1 23 273-295 34-56 (287)
427 3bfv_A CAPA1, CAPB2, membrane 87.1 1 3.5E-05 42.6 6.7 66 327-406 192-258 (271)
428 2og2_A Putative signal recogni 87.1 0.22 7.6E-06 49.7 2.0 27 269-295 154-180 (359)
429 3euj_A Chromosome partition pr 87.0 0.22 7.6E-06 51.8 2.0 27 268-295 26-52 (483)
430 2ze6_A Isopentenyl transferase 86.9 0.24 8.2E-06 46.5 2.0 22 274-295 3-24 (253)
431 3tlx_A Adenylate kinase 2; str 86.8 0.31 1.1E-05 45.2 2.8 24 271-294 28-51 (243)
432 4b4t_J 26S protease regulatory 86.8 1.3 4.4E-05 45.0 7.5 23 273-295 183-205 (405)
433 2p5t_B PEZT; postsegregational 86.8 0.18 6.1E-06 47.1 1.1 23 273-295 33-55 (253)
434 1lv7_A FTSH; alpha/beta domain 86.7 0.25 8.5E-06 45.8 2.0 23 273-295 46-68 (257)
435 4b4t_M 26S protease regulatory 86.6 0.92 3.1E-05 46.5 6.4 23 273-295 216-238 (434)
436 1f2t_A RAD50 ABC-ATPase; DNA d 86.6 0.27 9.3E-06 42.4 2.0 19 275-293 26-44 (149)
437 2dpy_A FLII, flagellum-specifi 86.5 0.2 6.8E-06 51.3 1.3 30 267-296 152-181 (438)
438 4a82_A Cystic fibrosis transme 86.5 0.11 3.9E-06 54.7 -0.5 29 268-296 363-391 (578)
439 2ph1_A Nucleotide-binding prot 86.4 2 7E-05 39.8 8.3 65 327-404 129-194 (262)
440 1g3q_A MIND ATPase, cell divis 86.3 1.2 4.1E-05 40.2 6.4 67 327-407 112-178 (237)
441 3vfd_A Spastin; ATPase, microt 86.2 1.7 5.9E-05 42.9 8.0 23 273-295 149-171 (389)
442 1sxj_A Activator 1 95 kDa subu 86.1 0.46 1.6E-05 49.2 3.9 23 273-295 78-100 (516)
443 3qf4_A ABC transporter, ATP-bi 86.0 0.14 4.9E-06 54.2 -0.1 29 268-296 365-393 (587)
444 3qf7_A RAD50; ABC-ATPase, ATPa 86.0 0.29 1E-05 48.6 2.2 19 275-293 26-44 (365)
445 1yqt_A RNAse L inhibitor; ATP- 85.9 0.23 7.9E-06 52.1 1.5 26 271-296 311-336 (538)
446 3end_A Light-independent proto 85.9 0.82 2.8E-05 43.5 5.3 68 327-404 157-225 (307)
447 1ak2_A Adenylate kinase isoenz 85.8 0.34 1.2E-05 44.4 2.4 23 273-295 17-39 (233)
448 3sr0_A Adenylate kinase; phosp 85.7 0.34 1.2E-05 44.3 2.4 22 274-295 2-23 (206)
449 4eaq_A DTMP kinase, thymidylat 85.6 0.31 1E-05 45.1 2.0 24 272-295 26-49 (229)
450 3ozx_A RNAse L inhibitor; ATP 85.3 0.25 8.6E-06 51.9 1.4 27 270-296 292-318 (538)
451 1tue_A Replication protein E1; 85.2 0.35 1.2E-05 45.0 2.1 27 269-295 52-81 (212)
452 1ltq_A Polynucleotide kinase; 85.0 0.35 1.2E-05 45.7 2.2 21 274-294 4-24 (301)
453 3bos_A Putative DNA replicatio 84.8 0.36 1.2E-05 43.2 2.0 24 272-295 52-75 (242)
454 3bk7_A ABC transporter ATP-bin 84.8 0.28 9.6E-06 52.3 1.5 26 271-296 381-406 (607)
455 2grj_A Dephospho-COA kinase; T 84.7 0.39 1.3E-05 43.4 2.2 23 273-295 13-35 (192)
456 1uj2_A Uridine-cytidine kinase 84.5 0.39 1.3E-05 44.6 2.2 22 273-294 23-44 (252)
457 3ake_A Cytidylate kinase; CMP 84.5 0.37 1.3E-05 42.5 2.0 21 274-294 4-24 (208)
458 3co5_A Putative two-component 84.5 1.5 5.2E-05 36.9 5.8 24 272-295 27-50 (143)
459 4f4c_A Multidrug resistance pr 84.4 0.18 6E-06 58.6 -0.3 29 267-295 1100-1128(1321)
460 2w58_A DNAI, primosome compone 84.3 0.39 1.3E-05 42.6 2.0 23 273-295 55-77 (202)
461 3j16_B RLI1P; ribosome recycli 84.3 0.39 1.3E-05 51.3 2.3 23 274-296 380-402 (608)
462 2qp9_X Vacuolar protein sortin 84.2 0.8 2.7E-05 45.1 4.4 22 274-295 86-107 (355)
463 2p65_A Hypothetical protein PF 84.1 0.3 1E-05 41.7 1.1 24 272-295 43-66 (187)
464 1njg_A DNA polymerase III subu 83.8 0.49 1.7E-05 41.7 2.5 22 274-295 47-68 (250)
465 1nlf_A Regulatory protein REPA 83.7 0.36 1.2E-05 45.5 1.6 24 271-294 29-52 (279)
466 3q9l_A Septum site-determining 83.6 2.4 8.3E-05 38.6 7.2 68 327-404 114-185 (260)
467 3la6_A Tyrosine-protein kinase 83.3 3.1 0.00011 39.7 8.1 67 327-406 202-268 (286)
468 3cio_A ETK, tyrosine-protein k 83.3 2.6 9.1E-05 40.4 7.6 67 327-406 214-280 (299)
469 3pvs_A Replication-associated 83.2 1.8 6.1E-05 44.2 6.7 25 272-296 50-74 (447)
470 1q3t_A Cytidylate kinase; nucl 83.1 0.48 1.7E-05 43.4 2.2 22 273-294 17-38 (236)
471 3kjh_A CO dehydrogenase/acetyl 83.0 0.93 3.2E-05 40.9 4.0 63 327-403 132-194 (254)
472 2f6r_A COA synthase, bifunctio 82.9 0.43 1.5E-05 45.5 1.8 22 273-294 76-97 (281)
473 3r20_A Cytidylate kinase; stru 82.9 0.53 1.8E-05 44.1 2.4 22 273-294 10-31 (233)
474 1bif_A 6-phosphofructo-2-kinas 82.8 0.48 1.6E-05 48.5 2.2 23 273-295 40-62 (469)
475 2zan_A Vacuolar protein sortin 82.8 2 6.7E-05 43.6 6.8 23 273-295 168-190 (444)
476 3te6_A Regulatory protein SIR3 82.7 0.36 1.2E-05 47.4 1.1 24 272-295 45-68 (318)
477 1jr3_A DNA polymerase III subu 82.1 1.5 5.2E-05 42.2 5.4 21 275-295 41-61 (373)
478 2iw3_A Elongation factor 3A; a 82.0 0.25 8.6E-06 55.6 -0.3 32 265-296 692-723 (986)
479 3gmt_A Adenylate kinase; ssgci 82.0 0.61 2.1E-05 43.7 2.4 22 273-294 9-30 (230)
480 3zvl_A Bifunctional polynucleo 81.7 0.55 1.9E-05 47.4 2.1 22 274-295 260-281 (416)
481 2chg_A Replication factor C sm 81.7 0.57 1.9E-05 40.9 2.0 22 274-295 40-61 (226)
482 2r62_A Cell division protease 81.7 0.56 1.9E-05 43.4 2.1 22 274-295 46-67 (268)
483 3qks_A DNA double-strand break 81.6 0.61 2.1E-05 42.2 2.2 19 275-293 26-44 (203)
484 3umf_A Adenylate kinase; rossm 81.4 0.65 2.2E-05 43.0 2.3 26 270-295 27-52 (217)
485 2dr3_A UPF0273 protein PH0284; 81.4 0.55 1.9E-05 42.5 1.8 20 274-293 25-44 (247)
486 4aby_A DNA repair protein RECN 81.3 0.12 4.2E-06 51.4 -2.8 26 267-293 56-81 (415)
487 3cr8_A Sulfate adenylyltranfer 81.0 0.39 1.3E-05 50.7 0.7 25 271-295 368-392 (552)
488 3cf0_A Transitional endoplasmi 80.9 0.59 2E-05 44.7 1.9 23 273-295 50-72 (301)
489 2iw3_A Elongation factor 3A; a 80.8 0.39 1.3E-05 54.1 0.6 28 268-295 457-484 (986)
490 1wcv_1 SOJ, segregation protei 80.8 1.7 5.9E-05 40.1 5.1 70 327-406 112-183 (257)
491 3u61_B DNA polymerase accessor 80.7 2.7 9.2E-05 39.9 6.6 21 275-295 51-71 (324)
492 1sxj_D Activator 1 41 kDa subu 80.6 0.83 2.8E-05 43.7 2.9 23 273-295 59-81 (353)
493 3g5u_A MCG1178, multidrug resi 80.5 0.35 1.2E-05 55.9 0.2 32 263-294 407-438 (1284)
494 1hyq_A MIND, cell division inh 80.3 1.3 4.6E-05 40.7 4.1 66 327-406 111-176 (263)
495 4f4c_A Multidrug resistance pr 80.1 0.36 1.2E-05 56.0 0.2 29 267-295 439-467 (1321)
496 1fnn_A CDC6P, cell division co 80.1 0.71 2.4E-05 44.7 2.2 22 274-295 46-67 (389)
497 2qby_A CDC6 homolog 1, cell di 79.9 0.61 2.1E-05 44.9 1.7 23 273-295 46-68 (386)
498 3ux8_A Excinuclease ABC, A sub 79.8 0.3 1E-05 52.4 -0.7 27 267-293 343-369 (670)
499 1sxj_C Activator 1 40 kDa subu 79.7 0.73 2.5E-05 44.6 2.2 24 272-295 46-69 (340)
500 1pzn_A RAD51, DNA repair and r 79.4 0.63 2.1E-05 45.9 1.6 26 271-296 130-155 (349)
No 1
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=100.00 E-value=3.7e-70 Score=549.62 Aligned_cols=292 Identities=45% Similarity=0.727 Sum_probs=265.4
Q ss_pred CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhc
Q 014655 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (421)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~ 154 (421)
+|+|+++|+|+||+|||||+| |+|||| +++|||||| |||+||||||+||++++||++|
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~--------------~~r~~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~ 58 (342)
T 1lnz_A 1 MFVDQVKVYVKGGDGGNGMVA--------------FRREKY----VPKGGPAGG----DGGKGGDVVFEVDEGLRTLMDF 58 (342)
T ss_dssp CEEEEEEEEEECCCCCCCCCC--------------BCCCSS----SCCCCBCCC----CCCCCCCEEEEECTTCCCSCGG
T ss_pred CCcceEEEEEEecCCCCceee--------------eehhhc----ccCCCCCCC----CCCCCCeEEEEeCCCcChHHHh
Confidence 599999999999999999997 778887 688999998 9999999999999999999999
Q ss_pred cccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN 233 (421)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~ 233 (421)
+++++|+|++|+||+ +++++|++|+|++|+||+||+|++ +++++++||++++|++++|+||.||.||.+|...
T Consensus 59 ~~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~ 132 (342)
T 1lnz_A 59 RYKKHFKAIRGEHGM------SKNQHGRNADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATP 132 (342)
T ss_dssp GTCCEEECCCCCCCC------STTCCCCCCCCEEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBT
T ss_pred CccceEEcCCCCCCC------CCCCcCCCCCCEEEEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCccCccccccc
Confidence 999999999999986 378899999999999999999999 5789999999999999999999999999877553
Q ss_pred hhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee
Q 014655 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 313 (421)
Q Consensus 234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~ 313 (421)
. +++|++++.|++||++.+.+||+.+++|+|||+||||||||||+|+++++.+++|+|||++|+.+.
T Consensus 133 ~-------------~~~p~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~ 199 (342)
T 1lnz_A 133 A-------------NPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM 199 (342)
T ss_dssp T-------------BSSCCCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEE
T ss_pred c-------------ccccccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEE
Confidence 2 234567789999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCC---CCChhhHHHHHHHHHhcCCCC
Q 014655 314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA---ENPVNDYRTVKEELRMYNPDY 390 (421)
Q Consensus 314 v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~---~~~~~~~~~l~~eL~~~~~~l 390 (421)
+.... ..+++++||||+++.+++..++...|++|+++||++|||+|+++ .++.+++..+.++|..|.+.+
T Consensus 200 v~~~~-------~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l 272 (342)
T 1lnz_A 200 VETDD-------GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL 272 (342)
T ss_dssp EECSS-------SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST
T ss_pred EEeCC-------CceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh
Confidence 87652 14799999999999988889999999999999999999999998 678888899999999998777
Q ss_pred CCCCEEEEEeCCCCCCCCCchHHH
Q 014655 391 LERPFIVVLNKIDLPEMYDDSSSR 414 (421)
Q Consensus 391 ~~kP~IIVlNK~Dl~~~~e~~~~l 414 (421)
.++|+++|+||+|+....+..+.+
T Consensus 273 ~~~p~ilV~NK~Dl~~~~e~~~~l 296 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAAENLEAF 296 (342)
T ss_dssp TTSCBCBEEECTTSTTHHHHHHHH
T ss_pred cCCCEEEEEECccCCCCHHHHHHH
Confidence 889999999999998755444433
No 2
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=100.00 E-value=1.2e-63 Score=514.15 Aligned_cols=283 Identities=46% Similarity=0.714 Sum_probs=256.7
Q ss_pred CceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhhc
Q 014655 75 KYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLEF 154 (421)
Q Consensus 75 ~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~~ 154 (421)
+|+|+++|+|+||+|||||+| |+|||| +++|||||| |||+||||||+||++++||++|
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~--------------f~re~~----~~~ggp~gg----~gg~gg~v~~~~~~~~~~l~~~ 58 (416)
T 1udx_A 1 MFQDVLVITVAAGRGGDGAVS--------------FRREKF----VPKGGPDGG----DGGRGGSVYLRARGSVDSLSRL 58 (416)
T ss_dssp CCCSEEEEEEECCCCCCCCCC--------------BCCBTT----BSCCCBCCC----CCCCCCCEEEEECTTCCSSTTS
T ss_pred CCcceEEEEEEecCCCCceee--------------eecccc----ccCCCCCCC----CCCCCCeEEEEeCCCcCchhhh
Confidence 599999999999999999997 778887 688999998 9999999999999999999999
Q ss_pred cccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCceEEEecCCCCCCCCCCcchh
Q 014655 155 HNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDEVLVARGGRGGISLLEVPEN 233 (421)
Q Consensus 155 ~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~~~va~GG~GG~gn~~~~~~ 233 (421)
++++|+|++|+||+ +++++|++|+|++|+||+||+|++ +++++++||++++|++++|+||.||+||.+|...
T Consensus 59 -~~~~~~a~~g~~g~------~~~~~g~~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~ 131 (416)
T 1udx_A 59 -SKRTYKAEDGEHGR------GSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSP 131 (416)
T ss_dssp -CSSCEECCCCCCCB------TTTBCCCCCCCEEEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCS
T ss_pred -hhceEEcCCCCCCC------CCCCcCCCCCCEEEecCCccEEEecCCCcEEeeccCCCceEEEecCCCCCcccceeecc
Confidence 88999999999986 378899999999999999999999 6789999999999999999999999999877553
Q ss_pred hhhccccccccccccchhHHHhcCCCccchhhhHHhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecccee
Q 014655 234 RRKRMTTLTTNIMRDDTDKVLVLGQHGEEVSLELILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGR 313 (421)
Q Consensus 234 ~r~~~~~~~~~~~r~~~~~~~~~G~~Ge~~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~ 313 (421)
. +++|++++.|++||+..+.++++.+++|+|||++||||||||++|++..+.+++++|||+.|+.+.
T Consensus 132 ~-------------~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~ 198 (416)
T 1udx_A 132 T-------------RQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV 198 (416)
T ss_dssp S-------------CSSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE
T ss_pred c-------------ccCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeE
Confidence 2 245667889999999999999999999999999999999999999999998999999999999998
Q ss_pred ecCCCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCC
Q 014655 314 LDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER 393 (421)
Q Consensus 314 v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k 393 (421)
+.... ...++++||||+++.+++..++...|++++++|+.+++|+|++ ..+.+++..++.++..+...+..+
T Consensus 199 V~~~~-------~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~ 270 (416)
T 1udx_A 199 VEVSE-------EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRR 270 (416)
T ss_dssp EECSS-------SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHS
T ss_pred EEecC-------cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcC
Confidence 87642 1468999999999988888888889999999999999999998 667788888888888876555679
Q ss_pred CEEEEEeCCCCCCC
Q 014655 394 PFIVVLNKIDLPEM 407 (421)
Q Consensus 394 P~IIVlNK~Dl~~~ 407 (421)
|.++|+||+|+...
T Consensus 271 P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 271 PSLVALNKVDLLEE 284 (416)
T ss_dssp CEEEEEECCTTSCH
T ss_pred CEEEEEECCChhhH
Confidence 99999999999865
No 3
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.89 E-value=7.5e-24 Score=215.22 Aligned_cols=126 Identities=32% Similarity=0.536 Sum_probs=111.0
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
...++|+|||+||||||||+|+|+++++.+++|||||++|+.|++.+.+ .+++++||||++++++++++++.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--------~~i~l~D~pGl~~~a~~~~~~g~ 141 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--------AKIQMLDLPGIIDGAKDGRGRGK 141 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--------EEEEEEECGGGCCC-----CHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--------cEEEEEeCCCccCCchhhhHHHH
Confidence 3457999999999999999999999999999999999999999998753 57999999999999999999999
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
.|+.+++.||+|++|+|++ ++..+.+.+..+|+.++..+.++|.++|+||+|..
T Consensus 142 ~~l~~i~~ad~il~vvD~~--~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 142 QVIAVARTCNLLFIILDVN--KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHHCSEEEEEEETT--SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHhcCccccccccC--ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 9999999999999999998 46788889999999988877889999999999974
No 4
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=1.3e-24 Score=227.51 Aligned_cols=253 Identities=22% Similarity=0.244 Sum_probs=167.5
Q ss_pred CCceEeEEEEEEcCCCCCcccccCCccchhhcccccccccCCCccCCCCCCCCCCCcCCCCCCCceEEEEecCCccchhh
Q 014655 74 HKYFDRVLITVRSGDGGHGAVLRMPTQSAVAKSHGKLAKENPWKKSSFKRDFDGSLILPMGGHGGDVVIYADEGKDTLLE 153 (421)
Q Consensus 74 ~~f~D~~~i~v~~G~GG~G~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~GG~GG~v~~~~~~~~~~L~~ 153 (421)
.+|+|++.|.+..| +.| |.+|++. +-+||||.|+++ ..+++|++
T Consensus 86 ~~~iDe~~v~~~~~-----p~S--------------ft~Ed~v---------------e~~~hGg~~v~~--~~l~~l~~ 129 (482)
T 1xzp_A 86 GEDVDEVVVVFYKS-----PKS--------------YTGEDMV---------------EVMCHGGPLVVK--KLLDLFLK 129 (482)
T ss_dssp SCCCCEEEEEEECT-----TSS--------------SSSSCEE---------------EEEECSCHHHHH--HHHHHHHT
T ss_pred CeeeeEEEEEEEeC-----CCc--------------CCCCCEe---------------eecCcCcHHHHH--HHHHHHHH
Confidence 46999999999997 665 6677762 256999999976 55788887
Q ss_pred ccccceEEeecCCCCCCCCcCcccCcCCCCCCCEEEeecCcceEEe-ccCceeeccCCCCce---EEEecCCCCCCCCCC
Q 014655 154 FHNKRRYNAKRGGNVDSMGVLSSQLRGGLAAPTLRIPVPLGTVVKH-KRGKLFSDLAHPGDE---VLVARGGRGGISLLE 229 (421)
Q Consensus 154 ~~~~~~~~a~~G~~g~~~g~~~~~~~~G~~g~d~~i~VP~GT~v~~-~~~~~~~dl~~~~~~---~~va~GG~GG~gn~~ 229 (421)
+ ....|+.|+..+ |...+|+ .| .+.+.++||.+...+ .++++++.|+.++..
T Consensus 130 ~---g~r~A~~Geft~---------raf~nGk------------~Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~~~ 185 (482)
T 1xzp_A 130 S---GARMAEPGEFTK---------RAFLNGK------------MDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFV 185 (482)
T ss_dssp T---TCEECCTTHHHH---------HHHHTTS------------SCHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHHHH
T ss_pred c---CCEeCCCCCcCC---------cCCCcCC------------cCHHHHHHHHHHHhhccHHHHHHHHHhcchhHhHHH
Confidence 6 456677777643 2233333 13 235778888765543 477889999888631
Q ss_pred cchhhhhccccccccccccchhHHHhcCCCc-------cchhhhHHhhh-------------hceecccCCCCCChhHHH
Q 014655 230 VPENRRKRMTTLTTNIMRDDTDKVLVLGQHG-------EEVSLELILRV-------------VADVGLVGLPNAGKSTLL 289 (421)
Q Consensus 230 ~~~~~r~~~~~~~~~~~r~~~~~~~~~G~~G-------e~~~l~leLk~-------------i~~V~LVG~pNaGKSSLL 289 (421)
+..|+....+.... +....+.+. .++ +...+..+|+. .++|+|+|.||||||||+
T Consensus 186 --~~~r~~l~~~~~~i--e~~idf~ee-i~~~~~~i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLl 260 (482)
T 1xzp_A 186 --DSLRRELIEVLAEI--RVELDYPDE-IETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLL 260 (482)
T ss_dssp --HHHHHHHHHHHHHH--HHHHHSTTT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHH
T ss_pred --HHHHHHHHHHHHHh--hhcCCCCcc-ccchHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHH
Confidence 11121111111100 000111111 111 11223333433 379999999999999999
Q ss_pred HHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCccc-ccccccCchh-HHHHHhcccCCEEEEEee
Q 014655 290 AAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAHLGKGLG-RNFLRHLRRTRLLVHVID 366 (421)
Q Consensus 290 naLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGli-e~a~~~~gl~-~~fL~~i~radvIl~VvD 366 (421)
|+|++.+. .++++|+||.++....+..+ +..+.+|||||+. +....-+.++ ...+.+++.||++|+|+|
T Consensus 261 n~L~~~~~a~vs~~~gTT~d~~~~~i~~~--------g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD 332 (482)
T 1xzp_A 261 NRLLNEDRAIVTDIPGTTRDVISEEIVIR--------GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLD 332 (482)
T ss_dssp HHHHHHTBCCCCCSSCCSSCSCCEEEEET--------TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHCCCCCccCCCCCeeeeeEEEEEecC--------CeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEec
Confidence 99999874 46899999999988887754 2479999999998 6554333332 335688999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 367 AAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 367 ~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
++++...++.+ +++.+ .++|+++|+||+|+...
T Consensus 333 ~s~~~s~~~~~-il~~l-------~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 333 ASSPLDEEDRK-ILERI-------KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp TTSCCCHHHHH-HHHHH-------TTSSEEEEEEECSSCCC
T ss_pred CCCCCCHHHHH-HHHHh-------cCCCEEEEEECcccccc
Confidence 99877666544 33333 25899999999999754
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.74 E-value=7.5e-19 Score=179.61 Aligned_cols=113 Identities=40% Similarity=0.696 Sum_probs=63.5
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCC-----CCCC-----------ccccccceEEecCCcc
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-----PTLG-----------AEKYSSEATLADLPGL 337 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~-----~~~~-----------~~~~~~~i~iiDtPGl 337 (421)
+|+|||.||||||||+|+|++.+..++++||||.+++.+.+... ..+. ...-..++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 79999999999999999999998666899999999999864311 0000 0000136999999999
Q ss_pred cccccccCchhHHHHHhcccCCEEEEEeeCCCC-----------CChhhHHHHHHHHHhc
Q 014655 338 IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE-----------NPVNDYRTVKEELRMY 386 (421)
Q Consensus 338 ie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~-----------~~~~~~~~l~~eL~~~ 386 (421)
.++++..++++..|+.+++.||++++|+|+++. +|.++++.|..||..+
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~ 141 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYW 141 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHH
Confidence 998888888988999999999999999999876 6777776666666543
No 6
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=4.6e-18 Score=171.91 Aligned_cols=111 Identities=38% Similarity=0.654 Sum_probs=85.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC---------CccccccceEEecCCcccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLIEGAHL 343 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~---------~~~~~~~~i~iiDtPGlie~a~~ 343 (421)
.+|+|||.||||||||+|+|++....+++|||||++|+.+.+...... +.......+.++||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 579999999999999999999998778999999999999987754210 00001136999999999999888
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCCC----------CChhhHHHHHHHH
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEEL 383 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~~----------~~~~~~~~l~~eL 383 (421)
.++++..|+.+++.||++++|+|+++. ++.++++.+..||
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL 132 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL 132 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence 889999999999999999999999862 5667776666555
No 7
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.70 E-value=1.5e-17 Score=168.46 Aligned_cols=111 Identities=39% Similarity=0.699 Sum_probs=87.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCC--------CCcc-----ccccceEEecCCcccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPT--------LGAE-----KYSSEATLADLPGLIE 339 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~--------~~~~-----~~~~~i~iiDtPGlie 339 (421)
.+|+|||.||||||||+|+|++..+.+++|||||++|+.+.+..... .... .....+.++||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 47999999999999999999998877899999999999998754210 0000 0124699999999999
Q ss_pred cccccCchhHHHHHhcccCCEEEEEeeCCCC----------CChhhHHHHHHHH
Q 014655 340 GAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEEL 383 (421)
Q Consensus 340 ~a~~~~gl~~~fL~~i~radvIl~VvD~s~~----------~~~~~~~~l~~eL 383 (421)
+++..++++..|+.+++.||++++|+|+++. +|.++++.+..||
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL 135 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETEL 135 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHH
Confidence 9988889999999999999999999999862 5666665555444
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.70 E-value=1.9e-17 Score=163.15 Aligned_cols=121 Identities=31% Similarity=0.390 Sum_probs=94.5
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc---ccCchhH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH---LGKGLGR 349 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~---~~~gl~~ 349 (421)
.|+++|.||||||||+|+|++.+..+ ++.+.||.....+.+.... ..+++++||||+.+... .++.+..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~-------~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPN-------EAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-------TEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCC-------CCeEEEEECcCCCccccchhHHHHHHH
Confidence 59999999999999999999998765 8899999888777765431 24799999999976431 1223344
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.+...+..+|++++|+|+++.....+...+.+.+.. .+.|+++|+||+|+..
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSS
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCC
Confidence 456678899999999999987777776654666655 3689999999999983
No 9
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.70 E-value=4.7e-17 Score=141.22 Aligned_cols=134 Identities=30% Similarity=0.395 Sum_probs=88.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
+++|+++|.+|||||||+++|.+.... ..+++.+|.+.....+... +..+.++||||..+.......+...
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~ 72 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD--------RGRFLLVDTGGLWSGDKWEKKIQEK 72 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET--------TEEEEEEECGGGCSSSSCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC--------CceEEEEECCCCCCccchHHHHHHH
Confidence 368999999999999999999988754 4677777777666555433 2478999999987643222223444
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
+...++.+|++++|+|+++.....+ ..+.+++.. .+.|+++|+||+|+.+.++....+..+++
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~ 135 (161)
T 2dyk_A 73 VDRALEDAEVVLFAVDGRAELTQAD-YEVAEYLRR-----KGKPVILVATKVDDPKHELYLGPLYGLGF 135 (161)
T ss_dssp HHHHTTTCSEEEEEEESSSCCCHHH-HHHHHHHHH-----HTCCEEEEEECCCSGGGGGGCGGGGGGSS
T ss_pred HHHHHHhCCEEEEEEECCCcccHhH-HHHHHHHHh-----cCCCEEEEEECcccccchHhHHHHHhCCC
Confidence 5667899999999999987644333 334455554 35899999999999876544444444443
No 10
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.69 E-value=3.3e-17 Score=168.87 Aligned_cols=133 Identities=24% Similarity=0.299 Sum_probs=88.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc--ccCchhH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGR 349 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~--~~~gl~~ 349 (421)
++|+|||.||||||||+|+|++.+.+ +.++|++|.+...+.+... +..+.+|||||+..... ....+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~~~~~ 73 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--------GKTFKLVDTCGVFDNPQDIISQKMKE 73 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET--------TEEEEEEECTTTTSSGGGCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEEC--------CeEEEEEECCCccccccchHHHHHHH
Confidence 68999999999999999999998865 4899999999888877643 24789999999875321 1233455
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC-CCch-HHHHhCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM-YDDS-SSRQGIGF 419 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~-~e~~-~~l~~lGl 419 (421)
....+++.||++++|+|++.+.+..+ ..+.++|+. .++|+++|+||+|+... .... .++..+|+
T Consensus 74 ~~~~~~~~ad~il~V~D~~~~~~~~d-~~i~~~l~~-----~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~ 139 (439)
T 1mky_A 74 VTLNMIREADLVLFVVDGKRGITKED-ESLADFLRK-----STVDTILVANKAENLREFEREVKPELYSLGF 139 (439)
T ss_dssp HHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHH-----HTCCEEEEEESCCSHHHHHHHTHHHHGGGSS
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEeCCCCccccHHHHHHHHHhcCC
Confidence 56678899999999999987655544 335556665 36899999999998643 2222 44555555
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.69 E-value=6.8e-17 Score=159.09 Aligned_cols=125 Identities=27% Similarity=0.322 Sum_probs=92.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-cCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-~~gl~~~ 350 (421)
..|+|||.||||||||+|+|++.+..+ ++.|.||.+...+.+... ..++.++||||+.+..+. ++.+...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--------~~~l~l~DTpG~~~~~~~l~~~~~~~ 79 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--------RRQIVFVDTPGLHKPMDALGEFMDQE 79 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--------TEEEEEEECCCCCCCCSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--------CcEEEEecCccccchhhHHHHHHHHH
Confidence 369999999999999999999998765 778889987666655432 247999999998764221 1123344
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
+..+++.+|++++|+|+++.....+ ..+++.+..+. .+.|+++|+||+|+....+
T Consensus 80 ~~~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 80 VYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV---GKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp HHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT---TTSCEEEEEECGGGCSSHH
T ss_pred HHHHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc---CCCCEEEEEECcccCCchH
Confidence 5677899999999999987654443 33445565532 3689999999999986544
No 12
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.67 E-value=7.2e-17 Score=154.00 Aligned_cols=126 Identities=20% Similarity=0.130 Sum_probs=85.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCC--eeeeccceeecCCCCCCccccccceEEecCCccccccccc-CchhH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPF--TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-KGLGR 349 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pf--TTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-~gl~~ 349 (421)
.+|+|||.+|||||||+|+|++.+..+..+++ +|..+..+.+... +..+.||||||+.+..... ..+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--------~~~i~liDTPG~~~~~~~~~~~~~~ 93 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--------KCHVEVVDTPDIFSSQVSKTDPGCE 93 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--------TEEEEEEECCSCSSTTHHHHSTTSH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--------CcEEEEEECCCCCCCCCCcHHHHHH
Confidence 58999999999999999999999887755544 7777766666543 3479999999997643321 22223
Q ss_pred HHHHh----cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRH----LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~----i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+.+. ...+|++|+|+|++. ....+...+....+.+.....+.|+|+|.||+|+.+.
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 94 ERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 33333 389999999999975 4444444444444445544457899999999999753
No 13
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.66 E-value=7.8e-17 Score=168.33 Aligned_cols=130 Identities=24% Similarity=0.223 Sum_probs=75.6
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g 346 (421)
.++...+|+|+|.||||||||+|+|++.+.. +.++++||.+.....+... +..+.+|||||+.+....-+.
T Consensus 229 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~--------g~~l~liDT~G~~~~~~~ve~ 300 (476)
T 3gee_A 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD--------KTMFRLTDTAGLREAGEEIEH 300 (476)
T ss_dssp HHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET--------TEEEEEEC-------------
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--------CeEEEEEECCCCCcchhHHHH
Confidence 3556678999999999999999999998654 5889999998877776654 247999999999764322111
Q ss_pred h-hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 347 L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 347 l-~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
+ ....+.+++.||+++||+|++++...++...+.+.+.... ++|+++|+||+|+....+
T Consensus 301 ~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 301 EGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP----AAKFLTVANKLDRAANAD 360 (476)
T ss_dssp -------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT----TSEEEEEEECTTSCTTTH
T ss_pred HHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC----CCCEEEEEECcCCCCccc
Confidence 1 1234567889999999999998877665545555555542 689999999999986553
No 14
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.66 E-value=1.3e-16 Score=142.64 Aligned_cols=123 Identities=24% Similarity=0.285 Sum_probs=88.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch-hHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL-GRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl-~~~ 350 (421)
.+|+|+|.+|||||||+|+|++.... +.++++||.+...+.+..+ +..+.++||||+.+....-+.. ...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~~ 76 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID--------GMPLHIIDTAGLREASDEVERIGIER 76 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET--------TEEEEEEECCCCSCCSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC--------CeEEEEEECCCcccchhHHHHHHHHH
Confidence 48999999999999999999988754 5788888887766666543 2368999999986532111111 112
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.+.+++.+|++++|+|+++..+.+.. .++.++..... .+.|+++|+||+|+..
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~-~~~~~~~~~~~--~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLP--AKLPITVVRNKADITG 129 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHH-HHCHHHHHHSC--TTCCEEEEEECHHHHC
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHHhcc--cCCCEEEEEECccCCc
Confidence 34567899999999999987665543 45555554332 3689999999999854
No 15
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.66 E-value=9e-17 Score=165.43 Aligned_cols=133 Identities=21% Similarity=0.281 Sum_probs=80.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc-ccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-LGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~~ 350 (421)
++|+|||.||||||||+|+|++.+.+ +.++|++|.+...+.+... +..+.+|||||+..... ....+...
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~~~~~ 75 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL--------NYDFNLIDTGGIDIGDEPFLAQIRQQ 75 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC--------SSCCEEEC---------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC--------CceEEEEECCCCCCcchhHHHHHHHH
Confidence 68999999999999999999998765 4889999999888777654 24799999999864321 11223344
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
...+++.||++|+|+|++++....+. .+.+.|+. .++|+++|+||+|+....+...++..+|+
T Consensus 76 ~~~~~~~ad~il~vvD~~~~~~~~d~-~~~~~l~~-----~~~pvilv~NK~D~~~~~~~~~~~~~lg~ 138 (436)
T 2hjg_A 76 AEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRANIYDFYSLGF 138 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHTT-----CCSCEEEEEECCCC-----CCCSSGGGSS
T ss_pred HHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCccchhhHHHHHHcCC
Confidence 55678899999999999887665543 34455543 46899999999999765433333444554
No 16
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=141.90 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=90.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+...+|+|+|.+|||||||+++|++........+.++.+.....+.... ....+.++||||..+.. .
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~-------~ 80 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG------KTIKLQIWDTAGQERFR-------T 80 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETT------EEEEEEEEEECCSGGGC-------T
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC------EEEEEEEEECCCcHhhh-------h
Confidence 3457899999999999999999998776555555555555444444321 12468999999965431 1
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
....+++.+|++++|+|++++...+....++.++..+.. .+.|+++|+||+|+....
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTC
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccccc
Confidence 234557889999999999987666666777777766543 368999999999997654
No 17
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.65 E-value=2.9e-17 Score=157.99 Aligned_cols=119 Identities=25% Similarity=0.378 Sum_probs=89.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc------ccCc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH------LGKG 346 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~------~~~g 346 (421)
++|+|+|.||||||||+|+|++....+.++|++|.+...+.+... +..+.++||||+.+... ..+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--------~~~~~lvDtpG~~~~~~~~~~~~~~e~ 73 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG--------EHLIEITDLPGVYSLVANAEGISQDEQ 73 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET--------TEEEEEEECCCCSSCC------CHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC--------CeEEEEEeCCCcccccccccCCCHHHH
Confidence 589999999999999999999998778999999998888877654 24799999999976532 2222
Q ss_pred hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 347 LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 347 l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+.+.|+.. +.+|++++|+|+++ .+....+..++.. .+.|+++|+||+|+....
T Consensus 74 i~~~~~~~-~~~d~vi~VvDas~---~~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 74 IAAQSVID-LEYDCIINVIDACH---LERHLYLTSQLFE-----LGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp HHHHHHHH-SCCSEEEEEEEGGG---HHHHHHHHHHHTT-----SCSCEEEEEECHHHHHHT
T ss_pred HHHHHHhh-CCCCEEEEEeeCCC---chhHHHHHHHHHH-----cCCCEEEEEEChhcCCcC
Confidence 34444322 78999999999986 2333334445543 468999999999986543
No 18
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.64 E-value=4.5e-16 Score=145.14 Aligned_cols=127 Identities=21% Similarity=0.371 Sum_probs=83.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc-h-hH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG-L-GR 349 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g-l-~~ 349 (421)
..+|+|+|.+|||||||+|+|++....+.+++++|.+.....+... ...+.+|||||+.+....... + ..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--------LNKYQIIDTPGLLDRAFENRNTIEMT 100 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--------TEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--------CCeEEEEECCCCcCcccchhhhHHHH
Confidence 3689999999999999999999887666778888887766655432 247899999999764332221 1 11
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChh--hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVN--DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~--~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+......+|++++|+|+++....+ ....+...+... ..+.|+++|+||+|+....+
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~---~~~~piilv~nK~Dl~~~~~ 159 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV---FSNKSIVIGFNKIDKCNMDS 159 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC---C-CCCEEEEEECGGGCC--C
T ss_pred HHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh---hcCCcEEEEEeCcccCCchh
Confidence 2223357789999999999876543 222344444432 23689999999999986544
No 19
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.64 E-value=2.7e-16 Score=137.35 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=81.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.+......+.++.+.....+.... ....+.++||||..+.. .+ ..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~~----~~---~~ 70 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING------KKVKLQIWDTAGQERFR----TI---TT 70 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSS------CEEEEEEECCTTGGGTS----CC---CH
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEeCCCChhhh----hh---HH
Confidence 5899999999999999999998765443334333333333333221 12468999999975532 12 23
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.+|++++|+|++++...+....+..++..+.. .+.|+++|+||+|+...
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~ 123 (170)
T 1g16_A 71 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETR 123 (170)
T ss_dssp HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcC
Confidence 456789999999999986666666666666665532 36899999999999543
No 20
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.64 E-value=2.1e-16 Score=148.80 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=81.4
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCC--CeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~p--fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
...+|+|+|.+|||||||+|+|++.......++ ++|..+....+... +..+.||||||+.+.......+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~i~liDTpG~~~~~~~~~~~~ 99 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK--------ETELVVVDTPGIFDTEVPNAETS 99 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET--------TEEEEEEECCSCC-----CHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC--------CceEEEEECCCccCCCCCHHHHH
Confidence 346899999999999999999999887666655 66776666555433 24799999999987654433333
Q ss_pred HHHHH----hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 349 RNFLR----HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 349 ~~fL~----~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+.+ ..+.+|++|+|+|++.... .+...+...++.+... ..+|+++|+||+|+....
T Consensus 100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 100 KEIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC---
T ss_pred HHHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcc
Confidence 34433 3456799999999975433 4444444444333211 236999999999987654
No 21
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.63 E-value=1.8e-16 Score=145.96 Aligned_cols=125 Identities=23% Similarity=0.220 Sum_probs=90.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCC-C-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-----
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK-P-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG----- 344 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~-~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~----- 344 (421)
.++|+|+|.+|||||||+|+|++.+ . .+.+++++|.+.....+.... ...+.||||||+.+.....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA-------EPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT-------SCSEEEEECCCCCSSCCCSTHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC-------CCcEEEEcCCCCCcccCChhhHHH
Confidence 4689999999999999999999986 2 457888888877665554211 2479999999986542111
Q ss_pred -CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 345 -KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 345 -~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..+...+++....+|+++||+|+++.....+ ..+..++.. ..+|+++|+||+|+....+
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~ 161 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-----TGKPIHSLLTKCDKLTRQE 161 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-----GCCCEEEEEECGGGSCHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-----cCCCEEEEEeccccCChhh
Confidence 1233455666667899999999987654333 345555554 4689999999999987544
No 22
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=4.8e-16 Score=141.71 Aligned_cols=124 Identities=17% Similarity=0.117 Sum_probs=84.7
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
.....+|+|+|.+|||||||+++|++.+......+.++.+.....+.... ....+.+|||||..+... +
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~- 85 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING------KKVKLQLWDTAGQERFRT----I- 85 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETT------EEEEEEEECCTTGGGGTC----C-
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECC------EEEEEEEEeCCCcHHHHH----H-
Confidence 34457999999999999999999998765443444444333333333221 123689999999765321 1
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...++..+|++++|+|++++...+....+..++..+.. ...|+++|+||+|+...
T Consensus 86 --~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~ 140 (213)
T 3cph_A 86 --TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETR 140 (213)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSC
T ss_pred --HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccc
Confidence 23556889999999999986666666666666665532 36899999999999543
No 23
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.63 E-value=4.8e-16 Score=157.09 Aligned_cols=125 Identities=26% Similarity=0.355 Sum_probs=85.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh---
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG--- 348 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~--- 348 (421)
+..|+|+|++|||||||+|+|++....+.+++++|+++..+.+... +..+.++||||++... ...+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~--------g~~v~l~DT~G~i~~l--p~~lve~f 248 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN--------NRKIMLVDTVGFIRGI--PPQIVDAF 248 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEET--------TEEEEEEECCCBCSSC--CGGGHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC--------CEEEEEEeCCCchhcC--CHHHHHHH
Confidence 3449999999999999999999988767889999999988887754 2468999999987642 12222
Q ss_pred HHHHHhcccCCEEEEEeeCCCCC--ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~--~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+.++..+|++++|+|++++. ..+....+.+.|..+.. .++|+++|+||+|+....
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~--~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV--SGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC--CSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc--CCCCEEEEEECCCCCCch
Confidence 23466788999999999998764 34444555566665532 468999999999997643
No 24
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.63 E-value=3.6e-16 Score=137.94 Aligned_cols=122 Identities=16% Similarity=0.071 Sum_probs=86.0
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+++|.+|||||||+++|++........+.++.+.....+.... ....+.++||||..+... +
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~--- 74 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEING------EKVKLQIWDTAGQERFRT----I--- 74 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETT------EEEEEEEEEETTGGGCSS----C---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECC------EEEEEEEEcCCCchhhhh----h---
Confidence 446899999999999999999998776555556666555444444321 124689999999655321 1
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...++..+|++++|+|++++...+....+..++.... ...|+++|+||+|+.+..
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 129 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERK 129 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhc
Confidence 2345788999999999998666666555666665543 468999999999987643
No 25
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.63 E-value=1.3e-15 Score=136.22 Aligned_cols=122 Identities=17% Similarity=0.102 Sum_probs=79.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC-------------------------------
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL------------------------------- 320 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~------------------------------- 320 (421)
..+|+|+|.+|||||||+++|++........+.+..+.....+......
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 3689999999999999999999876432222211122222222221100
Q ss_pred CccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEe
Q 014655 321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN 400 (421)
Q Consensus 321 ~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlN 400 (421)
........+.+|||||..+.. .....+++.+|++++|+|++++.+.+....+..++..+. ..|+++|+|
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~N 155 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----NYIIILVAN 155 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEEE
T ss_pred cCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEEE
Confidence 000001478999999975532 123455788999999999998766666666666666543 389999999
Q ss_pred CCCC
Q 014655 401 KIDL 404 (421)
Q Consensus 401 K~Dl 404 (421)
|+|+
T Consensus 156 K~D~ 159 (208)
T 3clv_A 156 KIDK 159 (208)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 9994
No 26
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.63 E-value=1.2e-15 Score=134.70 Aligned_cols=124 Identities=19% Similarity=0.144 Sum_probs=82.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++........+.++.+.....+.... ....+.+|||||..+. ....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~-------~~~~ 73 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG------HFVTMQIWDTAGQERF-------RSLR 73 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETT------EEEEEEEEECCCCGGG-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECC------EEEEEEEEeCCCchhh-------hhhH
Confidence 36899999999999999999998764433333333332222332221 1237899999996543 2223
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...++.+|++++|+|++++...+....+..++..+.. ...+.|+++|+||+|+...+
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 132 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ 132 (177)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc
Confidence 4557889999999999987666666666666654321 12468999999999997443
No 27
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.62 E-value=3.3e-16 Score=162.08 Aligned_cols=134 Identities=21% Similarity=0.264 Sum_probs=81.8
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc-cCchhH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-GKGLGR 349 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-~~gl~~ 349 (421)
.++|+|||.||||||||+|+|++.+.. +.++|++|.+...+.+... +..+.+|||||+...... .+.+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~--------~~~~~liDT~G~~~~~~~~~~~~~~ 94 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL--------NYDFNLIDTGGIDIGDEPFLAQIRQ 94 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC--------SSCCEEECCCC------CCHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC--------CceEEEEECCCCCCcchHHHHHHHH
Confidence 468999999999999999999998765 4789999999888777644 347999999998743211 223344
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIGF 419 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lGl 419 (421)
....+++.||++|+|+|+.......+. .+.++|+. .++|+++|+||+|+.+..+...++..+|+
T Consensus 95 ~~~~~~~~ad~il~VvD~~~~~~~~d~-~l~~~l~~-----~~~pvilV~NK~D~~~~~~~~~e~~~lg~ 158 (456)
T 4dcu_A 95 QAEIAMDEADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRANIYDFYSLGF 158 (456)
T ss_dssp HHHHHHHHCSEEEEEEESSSCSCHHHH-HHHHHHTT-----CCSCEEEEEECC---------CCSGGGSS
T ss_pred HHHhhHhhCCEEEEEEeCCCCCChHHH-HHHHHHHH-----cCCCEEEEEECccchhhhhhHHHHHHcCC
Confidence 455677899999999998876554443 35555554 57999999999999765544444445554
No 28
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.62 E-value=1.1e-15 Score=135.90 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=84.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++... ...++.|+.+.....+..+. ....+.++||||..+.. .+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~----~~~~--- 70 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDG------ETCLLDILDTAGQEEYS----AMRD--- 70 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETT------EEEEEEEEECCCC---C----TTHH---
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECC------cEEEEEEEECCCcHHHH----HHHH---
Confidence 5899999999999999999997663 34555555444333333221 12357889999976532 2222
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCch
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDS 411 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~ 411 (421)
..+..+|++++|+|++++...+....+..++..+.. ..+.|+++|+||+|+.......
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~ 128 (189)
T 4dsu_A 71 QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRTVDT 128 (189)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCSSCH
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccccCH
Confidence 345679999999999987666666666666665432 2468999999999998654433
No 29
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.62 E-value=1.1e-15 Score=137.58 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=80.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+|+|.+|||||||+++|++......++.. |.......+... ...+.+|||||+.+.. ....
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~-------~~~~ 81 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKG--------RVAFTVFDMGGAKKFR-------GLWE 81 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEET--------TEEEEEEEECCSGGGG-------GGGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeC--------CEEEEEEECCCCHhHH-------HHHH
Confidence 58999999999999999999987754422222 222222233221 3479999999986542 1223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhc------CCCCCCCCEEEEEeCCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMY------NPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~------~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+++.+|++|+|+|++++.+++....++..+... .+.....|+++|+||+|+....+
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~ 144 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT 144 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC
T ss_pred HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC
Confidence 4578899999999999876666655444444331 11112689999999999987644
No 30
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.61 E-value=1.9e-15 Score=133.38 Aligned_cols=115 Identities=24% Similarity=0.273 Sum_probs=82.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++.+.....++.+|.+.....+... +..+.+|||||..+.... .
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~-------~ 72 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN--------DKKITFLDTPGHEAFTTM-------R 72 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET--------TEEEEESCCCSSSSSSCS-------C
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC--------CceEEEEECCCCHHHHHH-------H
Confidence 4689999999999999999999887665556666655444444332 246899999997654221 1
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++..+|++++|+|+++....+.++.+. .+.. .+.|+++|+||+|+...
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~l~-~~~~-----~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 73 ARGAQVTDIVILVVAADDGVMPQTVEAIN-HAKA-----ANVPIIVAINKMDKPEA 122 (178)
T ss_dssp CSSCCCCCEEEEEEETTCCCCHHHHHHHH-HHGG-----GSCCEEEEEETTTSSCS
T ss_pred HHHHhhCCEEEEEEECCCCCcHHHHHHHH-HHHh-----CCCCEEEEEECccCCcC
Confidence 24568899999999998766555554332 2322 36899999999999864
No 31
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.61 E-value=1.9e-16 Score=153.47 Aligned_cols=119 Identities=27% Similarity=0.428 Sum_probs=88.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~ 350 (421)
.+|+|+|.+|||||||+|+|++....++++|++|.+...+.+... +..+.++||||+.+.... ...+...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~--------~~~~~liDtpG~~~~~~~~~~~~~~e~ 75 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT--------DHQVTLVDLPGTYSLTTISSQTSLDEQ 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS--------SCEEEEEECCCCSCSCC----CCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC--------CCceEEEECcCCCccccccccCCHHHH
Confidence 589999999999999999999998777899999999888887754 247899999998775321 1122222
Q ss_pred HHH---hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLR---HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~---~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+.+ ..+.+|++++|+|+++ .+....+..++... +.|+++|+||+|+.+.
T Consensus 76 i~~~~~~~~~~d~ii~VvD~~~---~~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 76 IACHYILSGDADLLINVVDASN---LERNLYLTLQLLEL-----GIPCIVALNMLDIAEK 127 (274)
T ss_dssp HHHHHHHHTCCSEEEEEEEGGG---HHHHHHHHHHHHHH-----TCCEEEEEECHHHHHH
T ss_pred HHHHHHhhcCCCEEEEEecCCC---hHHHHHHHHHHHhc-----CCCEEEEEECccchhh
Confidence 222 2378999999999986 23333444555542 6899999999998654
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.61 E-value=2e-15 Score=131.81 Aligned_cols=119 Identities=19% Similarity=0.136 Sum_probs=83.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.+|+++|.+|||||||+++|.+..... .+...++.......+.. ....+.++||||+.+.. ..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dt~G~~~~~-------~~ 71 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN--------ELHKFLIWDTAGLERFR-------AL 71 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT--------EEEEEEEEEECCSGGGG-------GG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC--------eEEEEEEEcCCCchhhh-------cc
Confidence 589999999999999999999876422 33334343332222221 12478999999985431 12
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+++.+|++++|+|++++.+.+....+..++..+.. ...|+++|+||+|+.+..
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGC
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccccc
Confidence 33557889999999999987666666667777776532 468899999999997643
No 33
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.61 E-value=1.9e-15 Score=135.16 Aligned_cols=121 Identities=26% Similarity=0.348 Sum_probs=85.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc------c
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------G 344 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~------~ 344 (421)
.++|+++|.+|||||||+|+|++.... ..+.+++|........ ..++.++||||+...... -
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~i~Dt~G~~~~~~~~~~~~~~ 91 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV-----------NSKYYFVDLPGYGYAKVSKKERMLW 91 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE-----------TTTEEEEECCCBSSSCCCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE-----------CCcEEEEECCCCccccCChhhHHHH
Confidence 468999999999999999999998743 3666777765544333 236899999997543211 1
Q ss_pred CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..+...+++....+|++++|+|++........ .+..++.. .+.|+++|+||+|+.+..+
T Consensus 92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~ 150 (195)
T 3pqc_A 92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS-----LNIPFTIVLTKMDKVKMSE 150 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCGGG
T ss_pred HHHHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEEChhcCChHH
Confidence 12334455566677999999999876544443 45556665 3689999999999986544
No 34
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.6e-15 Score=134.10 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=81.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCC-CCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY-PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~-pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
..+|+++|.+|||||||+++|++.......+ +.++.+.....+.... ....+.+|||||..+. ...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~~~Dt~G~~~~-------~~~ 76 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDG------VKVKLQMWDTAGQERF-------RSV 76 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETT------EEEEEEEEECCCC-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECC------EEEEEEEEeCCCcHHH-------HHH
Confidence 3689999999999999999999877543232 3222332222222211 1236899999996543 122
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+++.+|++++|+|++++...+....+..++..+.. .+.|+++|+||+|+....
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHER 132 (180)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCC
T ss_pred HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCccc
Confidence 34557889999999999987666666666666666543 468999999999998643
No 35
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.4e-15 Score=136.21 Aligned_cols=121 Identities=19% Similarity=0.127 Sum_probs=81.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.+|||||..+.. .+ ..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~----~~---~~ 82 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG------NKAKLAIWDTAGQERFR----TL---TP 82 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT------EEEEEEEEEECSSGGGC----CS---HH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECC------eEEEEEEEeCCCchhhh----hh---hH
Confidence 5899999999999999999998764432222222222222222211 12478999999975532 12 34
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.+|++++|+|++++........+..++..+.. ....|+++|+||+|+...
T Consensus 83 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 83 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENR 136 (195)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSC
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccc
Confidence 557889999999999876655565555556554321 246899999999999653
No 36
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.61 E-value=9.9e-16 Score=136.45 Aligned_cols=122 Identities=16% Similarity=0.041 Sum_probs=87.6
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+++|.+|||||||+++|++........+.++.+.....+.... ....+.+|||||..+. ...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~ 75 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGG------KYVKLQIWDTAGQERF-------RSV 75 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETT------EEEEEEEEEECCSGGG-------HHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC------EEEEEEEEeCCCcHHH-------HHH
Confidence 346899999999999999999998775544445444444333333221 1237899999996543 233
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+..+++.+|++++|+|++++...+....+..++..+.. .+.|+++|+||+|+...
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccc
Confidence 45668899999999999987666666666666665533 46899999999999653
No 37
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.61 E-value=2.2e-15 Score=136.69 Aligned_cols=124 Identities=21% Similarity=0.151 Sum_probs=84.5
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.+|||||..+... + .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~---~ 74 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD------RLVTMQIWDTAGQERFQS----L---G 74 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSS------CEEEEEEEEECSSGGGSC----S---C
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC------EEEEEEEEeCCCcHHHHH----h---H
Confidence 46899999999999999999998775443334333444333333321 124789999999755422 1 1
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...++.+|++|+|+|++++...+....+..++..+.. ...+.|+++|+||+|+....
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 133 (207)
T 1vg8_A 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ 133 (207)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC
T ss_pred HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc
Confidence 2446789999999999987666666666665554321 11368999999999998543
No 38
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.61 E-value=2e-15 Score=133.67 Aligned_cols=121 Identities=17% Similarity=0.040 Sum_probs=81.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.+......+..+.+.....+.... ....+.+|||||..+.. ....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~-------~~~~ 79 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND------ATVKFEIWDTAGQERYH-------SLAP 79 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT------EEEEEEEEECCCSGGGG-------GGTH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC------EEEEEEEEeCCCChhhh-------hhhH
Confidence 5899999999999999999998764432222222111111221111 12478999999975431 1233
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|++++...+....+..++..+.. ...|+++|+||+|+.+..
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 80 MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccc
Confidence 557889999999999876666666666666665532 368999999999997654
No 39
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.61 E-value=1.7e-15 Score=132.00 Aligned_cols=120 Identities=17% Similarity=0.068 Sum_probs=81.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|.+........+..+.+.....+.... ....+.++||||..+. .....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~G~~~~-------~~~~~ 70 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINE------HTVKFEIWDTAGQERF-------ASLAP 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT------EEEEEEEEEECCSGGG-------GGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCChhh-------hhhhh
Confidence 4799999999999999999998764332223222222222222211 1247899999997543 12234
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.+|++++|+|++++...++...+..++..... .+.|+++|+||+|+...
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGS
T ss_pred hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc
Confidence 557889999999999987666666666666655432 46899999999999754
No 40
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.60 E-value=4.1e-15 Score=129.54 Aligned_cols=117 Identities=23% Similarity=0.274 Sum_probs=79.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|||||||+++|++.+.. ...| |.......+... ...+.+|||||..+. ......
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~-------~~~~~~ 63 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK--------NISFTVWDVGGQDKI-------RPLWRH 63 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECS--------SCEEEEEECCCCGGG-------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEEC--------CEEEEEEEcCCChhh-------HHHHHH
Confidence 7999999999999999999876532 1122 333333333332 247999999998543 223345
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
+++.+|++++|+|++++.+.+....++..+... ....+.|+++|+||+|+.....
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~ 118 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN 118 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhc-hhhcCCeEEEEEECcCCcCCCC
Confidence 678999999999999776555544444433321 1124689999999999977543
No 41
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.60 E-value=1.8e-15 Score=133.23 Aligned_cols=120 Identities=19% Similarity=0.108 Sum_probs=82.4
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
..+|+++|.+|||||||+++|++..... .++.|+ .+.....+.... ....+.++||||..+. ...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~ 80 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSG------QKIKLQIWDTAGQERF-------RAV 80 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETT------EEEEEEEEECTTGGGT-------CHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECC------eEEEEEEEECCCChHh-------hhh
Confidence 4689999999999999999999876432 222222 111111222110 1246899999996543 223
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+++.+|++++|+|+++....+....+..++..+.. .+.|+++|+||+|+.+.
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQ 135 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGG
T ss_pred HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccc
Confidence 44567889999999999987666666667776766542 46899999999999654
No 42
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.60 E-value=1.5e-15 Score=136.54 Aligned_cols=121 Identities=20% Similarity=0.270 Sum_probs=78.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCC--CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc------
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK--PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL------ 343 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~--~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~------ 343 (421)
..+|+++|.+|||||||+|+|++.+ ....+.+++|.......+ +.++.+|||||+.+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-----------~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-----------NDELHFVDVPGYGFAKVSKSEREA 91 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-----------TTTEEEEECCCBCCCSSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-----------CCcEEEEECCCCCccccCHHHHHH
Confidence 4689999999999999999999876 234666777765544333 236899999997543211
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
-..+...+++....+|++++|+|+++.....+.. +..++.. .+.|+++|+||+|+....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~i~v~nK~Dl~~~~~ 151 (195)
T 1svi_A 92 WGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-----YGIPVIVIATKADKIPKGK 151 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECGGGSCGGG
T ss_pred HHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCChHH
Confidence 0122334444445569999999999876655543 4455554 4689999999999987654
No 43
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.60 E-value=2.6e-15 Score=136.31 Aligned_cols=122 Identities=14% Similarity=0.107 Sum_probs=83.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.+|||||+.+. ....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRND------KRIKLQIWDTAGLERY-------RTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGG-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECC------eEEEEEEEECCCchhh-------cchH
Confidence 46899999999999999999998764332222111111111222110 1247899999997543 2334
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+++.+|++++|+|++++...+....+..++..+.. ...|+++|+||+|+....
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTSC
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCccc
Confidence 5667899999999999987666666666677766542 468999999999997643
No 44
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.60 E-value=6.5e-16 Score=150.08 Aligned_cols=116 Identities=24% Similarity=0.434 Sum_probs=87.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccc--ccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH--LGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~--~~~gl~~~ 350 (421)
.+|+|+|.||||||||+|+|++....+.++|++|.+...+.+.. ...+.+|||||+.+... ..+.+.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~---------~~~l~l~DtpG~~~~~~~~~~e~v~~~ 74 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK---------NKDLEIQDLPGIYSMSPYSPEAKVARD 74 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT---------CTTEEEEECCCCSCSSCSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec---------CCeEEEEECCCcCccCCCChHHHHHHH
Confidence 58999999999999999999998878899999999888877753 14799999999875421 12234444
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
++.. +.+|++++|+|+++. +....+..++.. .+.|+++|+||+|+..
T Consensus 75 ~~~~-~~~d~vi~V~D~t~~---e~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 75 YLLS-QRADSILNVVDATNL---ERNLYLTTQLIE-----TGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHHT-TCCSEEEEEEEGGGH---HHHHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred HHhc-CCCCEEEEEecCCch---HhHHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence 5433 579999999999862 333344445544 4689999999999864
No 45
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.60 E-value=2.1e-15 Score=133.36 Aligned_cols=117 Identities=26% Similarity=0.446 Sum_probs=80.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~ 350 (421)
.+|+++|.+|||||||+++|++....+..+|++|.+...+.+... +..+.++||||+.+.... .+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 75 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--------GEKFKVVDLPGVYSLTANSIDEIIARD 75 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--------TEEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--------CcEEEEEECCCcccCCCcchhHHHHHH
Confidence 579999999999999999999887666778888887777766543 247899999998764211 1123333
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
+++. ..+|++++|+|+++. +....+..++.. .+.|+++|+||+|+..
T Consensus 76 ~~~~-~~~~~~i~v~D~~~~---~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 76 YIIN-EKPDLVVNIVDATAL---ERNLYLTLQLME-----MGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHH-HCCSEEEEEEETTCH---HHHHHHHHHHHH-----TTCCEEEEEECHHHHH
T ss_pred HHhc-CCCCEEEEEecCCch---hHhHHHHHHHHh-----cCCCEEEEEEchHhcc
Confidence 3332 479999999999752 233334455544 3689999999999854
No 46
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=1.6e-15 Score=132.35 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=79.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++........+ |........+... .....+.++||||..+. .....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~------~~~~~~~~~Dt~G~~~~-------~~~~~ 69 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIP-TVEDTYRQVISCD------KSICTLQITDTTGSHQF-------PAMQR 69 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCC-CSCEEEEEEEEET------TEEEEEEEEECCSCSSC-------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-CccccEEEEEEEC------CEEEEEEEEECCCchhh-------HHHHH
Confidence 5899999999999999999998654321111 1111111111111 01236899999997543 12234
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+..+|++++|+|++++...+....++.++..+.....+.|+++|+||+|+.+..
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~ 125 (172)
T 2erx_A 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR 125 (172)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC
T ss_pred HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc
Confidence 45677999999999997666666666666666654333468999999999997543
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.60 E-value=9.6e-16 Score=134.94 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=83.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++........+.++.+.....+.... ....+.++||||..+.. ..+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dt~G~~~~~-------~~~~ 81 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED------RTVRLQLWDTAGQERFR-------SLIP 81 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGGG-------GGSH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECC------eEEEEEEEECCCcHHHH-------HHHH
Confidence 5899999999999999999998765444444444444333333221 12368999999975432 1233
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.++..+|++++|+|++++...+....+..++..... .+.|+++|+||+|+.+..
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGC
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccC
Confidence 456789999999999876655666556665554322 368999999999997543
No 48
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.60 E-value=9e-16 Score=138.99 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=82.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.+|||||..+. ....
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~l~Dt~G~~~~-------~~~~ 92 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG------KKIRLQIWDTAGQERF-------NSIT 92 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETT------EEEEEEEEEECCSGGG-------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECC------eEEEEEEEeCCCcHHH-------HHHH
Confidence 46899999999999999999998764433333333333333333221 1236899999996543 2234
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...++.+|++++|+|+++....++...+..++..+.. .+.|+++|+||+|+....
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~~~ 147 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDR 147 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGC
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccccc
Confidence 4567889999999999987666776667777766543 468999999999997543
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.60 E-value=1.7e-15 Score=132.22 Aligned_cols=120 Identities=22% Similarity=0.173 Sum_probs=72.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|+++|.+|||||||+++|++..... .+.+++|..... .+.. ....+.++||||..+.. .+ .
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~i~D~~g~~~~~----~~---~ 66 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDG--------EEASLMVYDIWEQDGGR----WL---P 66 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETT--------EEEEEEEEECC----------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECC--------EEEEEEEEECCCCccch----hh---h
Confidence 589999999999999999999876543 455556654322 2221 13478999999976531 11 2
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..+++.+|++++|+|++++.+.+....++.++..+. ...+.|+++|+||+|+.+..+
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~ 123 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSRE 123 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCC
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccc
Confidence 234678999999999998766666666666666542 124689999999999986543
No 50
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.60 E-value=4.5e-16 Score=158.92 Aligned_cols=118 Identities=33% Similarity=0.618 Sum_probs=71.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC---------CccccccceEEecCCccc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL---------GAEKYSSEATLADLPGLI 338 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~---------~~~~~~~~i~iiDtPGli 338 (421)
.++...+|+|||.||||||||+|+|++.+..++++||||++|+.+.+...... +.......+.++||||+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 34555789999999999999999999998877999999999999988754210 000012359999999999
Q ss_pred ccccccCchhHHHHHhcccCCEEEEEeeCCCC----------CChhhHHHHHHHHHh
Q 014655 339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAE----------NPVNDYRTVKEELRM 385 (421)
Q Consensus 339 e~a~~~~gl~~~fL~~i~radvIl~VvD~s~~----------~~~~~~~~l~~eL~~ 385 (421)
++++.+++++..|+.+++.||++++|+|+++. +|..+++.+..+|..
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l 154 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQL 154 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhh
Confidence 99988889999999999999999999999752 567777777777654
No 51
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.60 E-value=1.6e-15 Score=138.13 Aligned_cols=123 Identities=17% Similarity=0.129 Sum_probs=86.5
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+|+|.+|||||||+++|++........+..+.+.....+..+. ....+.+|||||..+... +
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~--- 73 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDG------KTVKLQIWDTAGQERFRT----I--- 73 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETT------EEEEEEEECCTTTTTTTC----C---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC------EEEEEEEEeCCChHHHHH----H---
Confidence 346899999999999999999998775443344444333333333221 123689999999755321 1
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+++.+|++++|+|++++...+....+..++..+.. ...|+++|+||+|+....
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTC
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc
Confidence 23457889999999999987666666666677766542 368999999999997643
No 52
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.60 E-value=1e-15 Score=133.39 Aligned_cols=119 Identities=17% Similarity=0.078 Sum_probs=80.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++........+..+.+.....+.... ....+.++||||..+.. .+ ..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~----~~---~~ 72 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND------EDVRLMLWDTAGQEEFD----AI---TK 72 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETT------EEEEEEEECCTTGGGTT----CC---CH
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECC------EEEEEEEEcCCCcHhHH----HH---HH
Confidence 5899999999999999999998754332222222222222222211 12478999999976532 12 23
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.+|++++|+|++++.+.+....+..++..+. .+.|+++|+||+|+.+.
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 73 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGG
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcc
Confidence 45678999999999998665666666666665543 36899999999999764
No 53
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.59 E-value=3e-15 Score=131.06 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=80.9
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+...+|+++|.+|||||||+++|.+..... + ..|.......+... ...+.++||||..+.. .
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~-~~t~~~~~~~~~~~--------~~~~~~~Dt~G~~~~~-------~ 66 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT--T-IPTIGFNVETVTYK--------NLKFQVWDLGGLTSIR-------P 66 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC--C-CCCSSEEEEEEEET--------TEEEEEEEECCCGGGG-------G
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC--c-CCcCccceEEEEEC--------CEEEEEEECCCChhhh-------H
Confidence 344689999999999999999998765321 1 11222222223322 2478999999975432 1
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+..+++.+|++++|+|++++...+....++..+... ....+.|+++|+||+|+....+
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~ 125 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMT 125 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhc-hhhCCCEEEEEEECCCCcCCCC
Confidence 2335578899999999999877666555444443321 1124689999999999987643
No 54
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=130.59 Aligned_cols=122 Identities=19% Similarity=0.110 Sum_probs=75.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|+++|.+|||||||+++|++..... .+.+.+|.......+.. ....+.++||||..... ...+ .
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~g~~~~~--~~~~---~ 71 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDG--------EDTTLVVVDTWEAEKLD--KSWS---Q 71 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETT--------EEEEEEEECCC---------CHH---H
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECC--------EEEEEEEEecCCCCccc--hhhh---H
Confidence 589999999999999999999876433 23333333222222221 12368999999975420 0111 1
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+..+|++++|+|++++.+.+....++.++..+.. ..+.|+++|+||+|+.+..
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~ 127 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCR 127 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTC
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhcccc
Confidence 2345779999999999987666666666666665421 2368999999999997654
No 55
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.59 E-value=3.6e-15 Score=134.32 Aligned_cols=122 Identities=24% Similarity=0.285 Sum_probs=81.4
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+...+|+|+|.+|||||||+++|++.+...... .|.......+... ...+.+|||||..+.. .
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~-------~ 82 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKG--------NVTIKLWDIGGQPRFR-------S 82 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEET--------TEEEEEEEECCSHHHH-------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeC--------CEEEEEEECCCCHhHH-------H
Confidence 344689999999999999999999876432111 2222222233222 2479999999976431 1
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+...++.+|++++|+|+++....+....++..+... ....+.|+++|+||+|+....+
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~ 141 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALD 141 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCC
T ss_pred HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCCC
Confidence 2345568899999999999866655554444444321 1124689999999999987543
No 56
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.59 E-value=2.3e-15 Score=134.52 Aligned_cols=120 Identities=22% Similarity=0.257 Sum_probs=81.3
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+++|.+|||||||+++|++.+ ...+.. |.......+... ...+.++||||..+.. ..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~-t~~~~~~~~~~~--------~~~~~~~Dt~G~~~~~-------~~ 78 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTISP-TLGFNIKTLEHR--------GFKLNIWDVGGQKSLR-------SY 78 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCCC-CSSEEEEEEEET--------TEEEEEEEECCSHHHH-------TT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCcccc-cCccceEEEEEC--------CEEEEEEECCCCHhHH-------HH
Confidence 34689999999999999999999876 322222 222222233322 2479999999985431 12
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...+++.+|++++|+|++++.+.+....++.++.... ...+.|+++|+||+|+....+
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~ 136 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPGALS 136 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hcCCCcEEEEEeCccCCCCCC
Confidence 2345788999999999998766665554544443321 124689999999999987544
No 57
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.59 E-value=1.9e-15 Score=131.19 Aligned_cols=120 Identities=19% Similarity=0.147 Sum_probs=80.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|.+... ...++.|+.......+.... ....+.++||||..+. .....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~-------~~~~~ 70 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG------EEVQIDILDTAGQEDY-------AAIRD 70 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETT------EEEEEEEEECCC---C-------HHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECC------EEEEEEEEECCCcchh-------HHHHH
Confidence 5899999999999999999998763 33444444433333222221 1236899999997543 22234
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+..+|++++|+|++++...+....+..++..+.. ..+.|+++|+||+|+.+.
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGG
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECcccccc
Confidence 456789999999999976655555555555554432 236899999999999754
No 58
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.59 E-value=1.6e-15 Score=156.14 Aligned_cols=125 Identities=20% Similarity=0.236 Sum_probs=86.8
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh-
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG- 348 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~- 348 (421)
...+|+++|.||||||||+|+|++.+.. +.++++||.+.....+..+ +..+.+|||||+.+.......+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~e~ 245 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN--------QQEFVIVDTAGMRKKGKVYETTEK 245 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEET--------TEEEEETTHHHHTCBTTBCCCCSH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEEC--------CeEEEEEECCCcCcCccccchHHH
Confidence 3469999999999999999999998765 5889999998877666543 24699999999976543222221
Q ss_pred ---HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 349 ---RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 349 ---~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...+.++++||++++|+|++++.+.++.. +...+.. .++|+++|+||+|+.+..+
T Consensus 246 ~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~-----~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 246 YSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE-----AGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSCCCT
T ss_pred HHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH-----cCCcEEEEEECccCCCcch
Confidence 12346788999999999999887777654 4444443 4689999999999987544
No 59
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=135.33 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=82.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++....+..+. +|.......+... +..+.+|||||..+.. ..+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~-------~~~ 84 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSS--------SLSFTVFDMSGQGRYR-------NLW 84 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECS--------SCEEEEEEECCSTTTG-------GGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEEC--------CEEEEEEECCCCHHHH-------HHH
Confidence 46899999999999999999998763333332 3333334444433 2479999999975431 223
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCC--CCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY--LERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l--~~kP~IIVlNK~Dl~~~~ 408 (421)
..+++.+|++++|+|++++...+....++.++.... .. .+.|+++|+||+|+....
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~ 142 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP-DIKHRRIPILFFANKMDLRDAV 142 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHST-TTTTSCCCEEEEEECTTSTTCC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhccCCCeEEEEEeCcCcccCC
Confidence 355788999999999987655555544444444321 11 468999999999997653
No 60
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.59 E-value=2.5e-15 Score=130.88 Aligned_cols=118 Identities=17% Similarity=0.093 Sum_probs=80.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.+|+++|.+|||||||+++|++..... .+...++.......+.. ....+.++||||..+. ...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~D~~G~~~~-------~~~ 71 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD--------TTVKFEIWDTAGQERY-------HSL 71 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT--------EEEEEEEEEECCSGGG-------GGG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC--------EEEEEEEEeCCCcHHh-------hhh
Confidence 589999999999999999999765432 12222222222222211 1247899999997543 222
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+++.+|++++|+|++++.+.+....+..++..+.. ...|+++|+||+|+...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANK 126 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccc
Confidence 34567889999999999976666666666666665432 36889999999999654
No 61
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=4e-15 Score=134.51 Aligned_cols=119 Identities=18% Similarity=0.124 Sum_probs=84.8
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCC--ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPD--IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~--ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
...+|+|+|.+|||||||+++|++.... ..+..++|.......+.. ....+.+|||||..+..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~Dt~G~~~~~------- 86 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN--------ELHKFLIWDTAGQERFH------- 86 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS--------SEEEEEEEEECCSGGGG-------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC--------EEEEEEEEcCCCchhhH-------
Confidence 3468999999999999999999987632 234444443332222221 12479999999975431
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
......++.+|++++|+|++++...+....+..++..+.. ...|+++|+||+|+.+
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSD 142 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 1233557889999999999987766777777777766542 4689999999999975
No 62
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.59 E-value=2.7e-15 Score=132.36 Aligned_cols=124 Identities=17% Similarity=0.119 Sum_probs=78.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++........+.++.+.....+.... .....+.++||||..+. ....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~-------~~~~ 75 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG-----DKVATMQVWDTAGQERF-------QSLG 75 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS-----SCCEEEEEECCC----------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcC-----CcEEEEEEEECCCChHh-------hhhh
Confidence 46899999999999999999998764332233333333333333321 01247899999996543 1223
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~--~l~~kP~IIVlNK~Dl~~~ 407 (421)
...++.+|++++|+|++++...+....+..++..+.. .....|+++|+||+|+...
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred HHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 3557889999999999987666666666665554321 1246899999999999644
No 63
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.58 E-value=6.2e-15 Score=131.24 Aligned_cols=128 Identities=16% Similarity=0.055 Sum_probs=83.5
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeecc-ceeecCCCCCC---ccccccceEEecCCcccccccccCch
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPN-LGRLDGDPTLG---AEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~-~g~v~~~~~~~---~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
..+|+|+|.+|||||||+++|++........+..+.+.. ...+....... .......+.++||||+.+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------- 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF------- 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-------
Confidence 468999999999999999999986643222222111111 11222211000 0000247999999997543
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+..+++.+|++++|+|++++...+....+..++..+.. ..+.|+++|+||+|+.+.
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGG
T ss_pred HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 33456678899999999999987666666666666665432 136899999999999764
No 64
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=138.43 Aligned_cols=122 Identities=20% Similarity=0.134 Sum_probs=80.0
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
.....+|+++|.+|||||||+++|++.. ....++.|+.+.....+..+. ....+.+|||||..+... +.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~~ 85 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDG------RPVRLQLCDTAGQDEFDK----LR 85 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETT------EEEEEEEEECCCSTTCSS----SG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECC------EEEEEEEEECCCCHHHHH----Hh
Confidence 3455799999999999999999999876 334555555443333332221 123678999999865422 22
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++..+|++++|+|++++.+.+... .|..++..+. .+.|+++|+||+|+...
T Consensus 86 ---~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 86 ---PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC---PKAPIILVGTQSDLRED 139 (201)
T ss_dssp ---GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGGC
T ss_pred ---HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhc
Confidence 23568899999999999876666654 4666666654 36899999999999753
No 65
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.58 E-value=4e-15 Score=129.48 Aligned_cols=121 Identities=18% Similarity=0.161 Sum_probs=81.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.... ....+.++||||..+.. .+. .
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~~----~~~---~ 69 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDC------QQCMLEILDTAGTEQFT----AMR---D 69 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSS------CEEEEEEEEECSSCSST----THH---H
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECC------EEEEEEEEECCChHHHH----HHH---H
Confidence 48999999999999999999986532 2333333322222222221 12468999999976532 222 3
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|++++.+.+....+.+++..+.. ..+.|+++|+||+|+.+..
T Consensus 70 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDER 124 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccc
Confidence 446679999999999986655666556655554321 2468999999999997643
No 66
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.58 E-value=2.5e-15 Score=135.50 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=82.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|+|.+|||||||+++|++.+......+..+.+.....+..+. ....+.++||||..+.. .+ .
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~----~~---~ 87 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG------KQIKLQIWDTAGQESFR----SI---T 87 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETT------EEEEEEEECCTTGGGTS----CC---C
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC------EEEEEEEEECCCchhhh----hh---H
Confidence 46899999999999999999998765443333333222222222221 12478999999976532 12 2
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...++.+|++++|+|+++....+....+..++..+.. .+.|+++|+||+|+...
T Consensus 88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESR 141 (191)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGG
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCc
Confidence 3456789999999999987666666667777766432 46899999999999753
No 67
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.58 E-value=4.2e-15 Score=133.60 Aligned_cols=124 Identities=19% Similarity=0.081 Sum_probs=82.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.+|||||..+.. .. ..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~---~~---~~ 87 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG------ERIKIQLWDTAGQERFR---KS---MV 87 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT------EEEEEEEEECCCSHHHH---TT---TH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECC------EEEEEEEEECCCchhhh---hh---hh
Confidence 46899999999999999999998764332223222222222222211 12478999999975431 01 23
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...++.+|++++|+|+++..+.+....+..++..+.. ..+.|+++|+||+|+....
T Consensus 88 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~ 143 (189)
T 1z06_A 88 QHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAI 143 (189)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGC
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccc
Confidence 3456789999999999986666666666666655431 2468999999999997543
No 68
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.58 E-value=3.1e-15 Score=133.77 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=79.5
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++.+... + ..|.......+... +..+.++||||..+... .+
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~~-------~~ 82 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVVH--T-SPTIGSNVEEIVIN--------NTRFLMWDIGGQESLRS-------SW 82 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCEE--E-ECCSSSSCEEEEET--------TEEEEEEEESSSGGGTC-------GG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCc--c-CCcCceeeEEEEEC--------CEEEEEEECCCCHhHHH-------HH
Confidence 3689999999999999999999876411 0 11111111222221 24799999999865321 22
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+++.+|++++|+|+++....+....++..+.... ...+.|+++|+||+|+....
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~ 138 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECM 138 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccCC
Confidence 355788999999999998777666555554444321 12468999999999997653
No 69
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.58 E-value=1.1e-15 Score=133.58 Aligned_cols=120 Identities=20% Similarity=0.065 Sum_probs=78.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++........+..+.+.....+..+. ....+.+|||||..+... ...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~~-------~~~ 73 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGG------KRVNLAIWDTAGQERFHA-------LGP 73 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSS------CEEEEEEEECCCC--------------C
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECC------EEEEEEEEECCCcHhhhh-------hHH
Confidence 5899999999999999999998764332333322222222333221 123689999999654321 122
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.+|++++|+|++++.+.+....+..++..+.. ...|+++|+||+|+.+.
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 74 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKE 126 (170)
T ss_dssp CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGG
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc
Confidence 346789999999999886655665556555554321 35899999999999764
No 70
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.58 E-value=8.5e-16 Score=147.80 Aligned_cols=117 Identities=26% Similarity=0.380 Sum_probs=88.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~ 350 (421)
.+|+|+|.||||||||+|+|++....+.++|++|.+...+.+... ...+.++||||+.+.... .+.+.+.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~e~v~~~ 77 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--------GYTINLIDLPGTYSLGYSSIDEKIARD 77 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--------TEEEEEEECCCCSSCCSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--------CeEEEEEECCCcCccCCCCHHHHHHHH
Confidence 589999999999999999999988778899999988887777643 247999999998754321 1223444
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
|+.. +.+|++++|+|+++.. . ...+..++.. .+.|+++|+||+|+..
T Consensus 78 ~~~~-~~~d~ii~V~D~t~~~--~-~~~~~~~l~~-----~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 78 YLLK-GDADLVILVADSVNPE--Q-SLYLLLEILE-----MEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHHH-SCCSEEEEEEETTSCH--H-HHHHHHHHHT-----TTCCEEEEEECHHHHH
T ss_pred HHhh-cCCCEEEEEeCCCchh--h-HHHHHHHHHh-----cCCCEEEEEECcCCCC
Confidence 5433 6899999999998632 2 2234445544 3689999999999864
No 71
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.58 E-value=4.1e-15 Score=130.19 Aligned_cols=123 Identities=23% Similarity=0.144 Sum_probs=76.1
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++........+.+|.+.....+..+. ....+.++||||..+... .+...
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~D~~g~~~~~~---~~~~~- 71 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDK------EEVTLIVYDIWEQGDAGG---WLQDH- 71 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETT------EEEEEEEECCCCC-----------CH-
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECC------eEEEEEEEECCCccccch---hhhhh-
Confidence 35899999999999999999987665443334444444333333221 124688999999865321 11222
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.++.+|++++|+|++++.+.+....++.++..... ..+.|+++|+||+|+.+.
T Consensus 72 --~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 124 (169)
T 3q85_A 72 --CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARS 124 (169)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGG
T ss_pred --hhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhc
Confidence 24568999999999987666666666666665432 136899999999999754
No 72
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=3.8e-15 Score=133.66 Aligned_cols=119 Identities=19% Similarity=0.203 Sum_probs=79.1
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+++|.+|||||||+++|++.+.. .+ ..|.......+... +..+.+|||||..+.. .+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~----~~--- 76 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HT-SPTIGSNVEEIVIN--------NTRFLMWDIGGQESLR----SS--- 76 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EE-ECCSCSSCEEEEET--------TEEEEEEECCC----C----GG---
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cC-cCCCccceEEEEEC--------CEEEEEEECCCCHhHH----HH---
Confidence 3468999999999999999999976532 11 11222222223222 2479999999986532 12
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+..+++.+|++++|+|++++.+.+....++.++.... ...+.|+++|+||+|+....
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~ 133 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECM 133 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCC
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCC
Confidence 2345688999999999998877776666555554421 12468999999999998653
No 73
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=3.8e-15 Score=134.04 Aligned_cols=122 Identities=15% Similarity=0.112 Sum_probs=79.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++........+ |........+..+ .....+.+|||||..+. .....
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~------~~~~~~~l~Dt~G~~~~-------~~~~~ 74 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP-TIEDTYRQVISCD------KSVCTLQITDTTGSHQF-------PAMQR 74 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCTTSC-CCCEEEEEEEEET------TEEEEEEEEECCGGGSC-------HHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCcccC-ccccceeEEEEEC------CEEEEEEEEeCCChHHh-------HHHHH
Confidence 5899999999999999999998654321111 1111111111111 11246899999997543 12233
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+..+|++++|+|++++...+....++..+..+.....+.|+++|+||+|+....
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~ 130 (199)
T 2gf0_A 75 LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE 130 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS
T ss_pred HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc
Confidence 45678999999999998666666565666665543323468999999999997643
No 74
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.58 E-value=2.5e-15 Score=135.06 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=83.1
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.+|||||..+... +
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~--- 87 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHD------KRIKLQIWDTAGQERYRT----I--- 87 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETT------EEEEEEEEECCSCCSSCC----S---
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECC------eEEEEEEEeCCCcHHHhh----h---
Confidence 457999999999999999999998764332222111111111221110 124789999999754321 2
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
....++.+|++++|+|++++...+....+..++..+. ..+.|+++|+||+|+....
T Consensus 88 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~ 143 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDER 143 (189)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGC
T ss_pred HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccccccc
Confidence 2345788999999999988766666666777776653 2468999999999997643
No 75
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.58 E-value=5e-15 Score=128.32 Aligned_cols=121 Identities=18% Similarity=0.151 Sum_probs=80.5
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++..... .+..|+.+.....+.... ....+.++||||..+. .....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~l~D~~G~~~~-------~~~~~ 69 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDS------SPSVLEILDTAGTEQF-------ASMRD 69 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTCC-------HHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECC------EEEEEEEEECCCchhh-------HHHHH
Confidence 589999999999999999999765332 333333222222222211 1235899999996543 22233
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|++++...+....+..++..+.. ..+.|+++|+||+|+....
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~ 124 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESER 124 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGC
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccc
Confidence 456789999999999976655555555555554321 2468999999999987543
No 76
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.58 E-value=5.2e-15 Score=131.42 Aligned_cols=121 Identities=16% Similarity=0.102 Sum_probs=81.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+|+|.+|||||||+++|++.. ....++.|+.......+..+. ....+.+|||||..+... +. .
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~~---~ 72 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNG------QEYHLQLVDTAGQDEYSI----FP---Q 72 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETT------EEEEEEEEECCCCCTTCC----CC---G
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECC------EEEEEEEEeCCCchhhhH----HH---H
Confidence 589999999999999999999665 234454554433333333221 124679999999765421 22 2
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|++++.+.+....+..++..+.. ..+.|+++|+||+|+....
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~ 127 (181)
T 3t5g_A 73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMER 127 (181)
T ss_dssp GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTC
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcc
Confidence 346789999999999987666666666666644321 2468999999999997544
No 77
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.58 E-value=4.3e-15 Score=142.43 Aligned_cols=128 Identities=15% Similarity=0.110 Sum_probs=87.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
..+|+++|.+|||||||+|+|++.+. .+.+++++|.......+... +..+.||||||+.+.........+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~l~liDTpG~~~~~~~~~~~~~~ 107 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG--------GFTINIIDTPGLVEAGYVNHQALEL 107 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET--------TEEEEEEECCCSEETTEECHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC--------CeeEEEEECCCCCCcccchHHHHHH
Confidence 36899999999999999999999876 45778888887766665543 2479999999998764433222222
Q ss_pred HHHhc--ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i--~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+.+ ..+|+++||+|+......+....+.+++.........+|+++|+||+|+...
T Consensus 108 i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 108 IKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 22222 2789999999887644333323455555543222223589999999999643
No 78
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.57 E-value=5.2e-15 Score=133.86 Aligned_cols=122 Identities=19% Similarity=0.144 Sum_probs=85.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|+|.+|||||||+++|++... ...++.|+.+.....+..+. ....+.+|||||..+. ....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~~ 79 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG------EEVQIDILDTAGQEDY-------AAIR 79 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTCC-------HHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECC------EEEEEEEEcCCChhhh-------HHHH
Confidence 36899999999999999999998763 34555555544333333221 1236899999997543 2223
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+..+|++++|+|+++....+....+..++..+.. ....|+++|+||+|+....
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~ 135 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKR 135 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccc
Confidence 3456789999999999986666666666666655432 2368999999999997643
No 79
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.57 E-value=3.2e-15 Score=132.45 Aligned_cols=120 Identities=19% Similarity=0.147 Sum_probs=83.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+|+|.+|||||||+++|++... ...++.|+.......+.... ....+.++||||..+. .....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~-------~~~~~ 84 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDG------EEVQIDILDTAGQEDY-------AAIRD 84 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTCC-------HHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECC------EEEEEEEEECCCCccc-------HHHHH
Confidence 5899999999999999999998763 34455555443333332221 1236899999997543 22334
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.+|++++|+|+++....+....+..++..+.. ..+.|+++|+||+|+.+.
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGG
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 556789999999999976655565555555555432 236899999999999764
No 80
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.57 E-value=1.8e-14 Score=128.82 Aligned_cols=126 Identities=24% Similarity=0.248 Sum_probs=81.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCC--------CCeeeeccceeecCCCCCCccccccceEEecCCcccccccc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY--------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL 343 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~--------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~ 343 (421)
..+|+|+|.+|||||||++.|.+........ ..+|........... ........+.+|||||..+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~~~~i~Dt~G~~~~--- 87 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG---EVKGFKTRFHLYTVPGQVFY--- 87 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCC---CSSSCEEEEEEEECCSCCSC---
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccc---cccCCceEEEEEeCCChHHH---
Confidence 3689999999999999999998765433111 112221111111110 00111347999999997543
Q ss_pred cCchhHHHHHhcccCCEEEEEeeCCCCCC---hhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 344 GKGLGRNFLRHLRRTRLLVHVIDAAAENP---VNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 344 ~~gl~~~fL~~i~radvIl~VvD~s~~~~---~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
......+++.+|++++|+|++++.. .+.++.+..++..+.....+.|+++|+||+|+...
T Consensus 88 ----~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 88 ----NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp ----SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred ----HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 2223356789999999999985422 23445566666666545567999999999999765
No 81
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.57 E-value=3e-15 Score=136.92 Aligned_cols=124 Identities=15% Similarity=0.073 Sum_probs=82.3
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
.....+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.+|||||..+. .
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~ 92 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQG------KRVKLQIWDTAGQERF-------R 92 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETT------EEEEEEEECCTTCGGG-------H
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECC------EEEEEEEEECCCcHhH-------H
Confidence 34557999999999999999999998764322212111222222222211 1247899999997543 2
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
......++.+|++++|+|++++...+....+..++..+.. .+.|+++|+||+|+...
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCccccc
Confidence 2344567889999999999987666666667777766542 46899999999999753
No 82
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.57 E-value=8.7e-16 Score=159.87 Aligned_cols=125 Identities=30% Similarity=0.384 Sum_probs=82.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG 346 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g 346 (421)
.++...+|+|+|.||||||||+|+|++.+.. +.++++||.+.....+..+ +..+.+|||||+.+....-+.
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--------g~~v~liDT~G~~~~~~~ve~ 291 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG--------GIPVQVLDTAGIRETSDQVEK 291 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET--------TEEEEECC-------------
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC--------CEEEEEEECCccccchhHHHH
Confidence 3556678999999999999999999987654 5788999988776665543 247899999999764322121
Q ss_pred h-hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 347 L-GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 347 l-~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+ ....+..++.+|++++|+|++++....+ ..++..+. .+|+++|+||+|+....
T Consensus 292 ~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-------~~piivV~NK~Dl~~~~ 346 (462)
T 3geh_A 292 IGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-------HRPLILVMNKIDLVEKQ 346 (462)
T ss_dssp -------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-------TSCEEEEEECTTSSCGG
T ss_pred HHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-------CCcEEEEEECCCCCcch
Confidence 1 1234567788999999999998665444 33444432 37999999999997643
No 83
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.57 E-value=6.1e-15 Score=127.42 Aligned_cols=121 Identities=17% Similarity=0.117 Sum_probs=80.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|.+.... ..+..|+.+.....+.... ....+.++||||..+.. . ...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~D~~G~~~~~----~---~~~ 69 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDG------ETCLLDILDTAGQEEYS----A---MRD 69 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETT------EEEEEEEEECCCCSSCC----H---HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECC------EEEEEEEEECCCchhhh----H---HHH
Confidence 47999999999999999999976532 2333333222222222111 12368999999975431 1 223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|+++....+....+..++..+.. ..+.|+++|+||+|+....
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~ 124 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAART 124 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcc
Confidence 456789999999999876555555666666655432 1368999999999998643
No 84
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=3e-15 Score=137.71 Aligned_cols=123 Identities=17% Similarity=0.108 Sum_probs=86.2
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
....+|+|+|.+|||||||+++|++........+..+.+.....+..+. ....+.+|||||..+. ..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~l~Dt~G~~~~-------~~ 90 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEING------EKVKLQIWDTAGQERF-------RS 90 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGG-------HH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCcHHH-------HH
Confidence 3457999999999999999999998765433333333333333333221 1236899999996442 22
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.....++.+|++++|+|++++.+.+....+..++..+.. ...|+++|+||+|+...
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAER 146 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccc
Confidence 344567889999999999987666666667777766542 46899999999999754
No 85
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.57 E-value=1.9e-15 Score=134.06 Aligned_cols=118 Identities=20% Similarity=0.140 Sum_probs=80.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+... .....+.+|||||..+.. .+ ..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~~----~~---~~ 71 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVD------GKPVNLGLWDTAGQEDYD----RL---RP 71 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEET------TEEEEEEEECCCCSGGGT----TT---GG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEEC------CEEEEEEEEECCCCHhHH----HH---HH
Confidence 5899999999999999999997653 2333333332222222211 112467899999986542 11 12
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.+|++++|+|++++.+.++.. .+..++..+. .+.|+++|+||+|+...
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD 124 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTC
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC---CCCCEEEEeEccccccc
Confidence 3568899999999998766565554 4666666654 26899999999999765
No 86
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.57 E-value=7.3e-16 Score=137.20 Aligned_cols=122 Identities=13% Similarity=0.079 Sum_probs=63.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++........+.++.+.....+..+. ....+.+|||||..+... ..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~-------~~ 74 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG------KRIKLQIWDTAGQERFRT-------IT 74 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETT------EEEEEEEEEC----------------C
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECC------EEEEEEEEcCCCChhhhh-------hH
Confidence 46899999999999999999997654332233333333322332221 124789999999754321 12
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...++.+|++++|+|++++.+.+....+..++..+.. .+.|+++|+||+|+.+..
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~ 129 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKR 129 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCC
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccC
Confidence 2446789999999999986666666666666665432 368999999999997643
No 87
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.57 E-value=1e-15 Score=150.48 Aligned_cols=118 Identities=27% Similarity=0.364 Sum_probs=84.5
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCccc-cccc-ccCchhHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLI-EGAH-LGKGLGRN 350 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGli-e~a~-~~~gl~~~ 350 (421)
.|+|||.||||||||+|+|++.+..+ ++.+.||.+...+.+... ..++.++||||+. +... .+..+...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--------~~~i~~iDTpG~~~~~~~~l~~~~~~~ 81 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--------AYQAIYVDTPGLHMEEKRAINRLMNKA 81 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--------TEEEEEESSSSCCHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--------CeeEEEEECcCCCccchhhHHHHHHHH
Confidence 69999999999999999999987654 677888887777766533 2479999999986 3211 00011112
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
....++.+|++++|+|+++ ....+ +.+.+.+.. .+.|+++|+||+|+..
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~-~~i~~~l~~-----~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDD-EMVLNKLRE-----GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHH-HHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHH-HHHHHHHHh-----cCCCEEEEEECcccCc
Confidence 2355688999999999976 33333 344555543 4689999999999986
No 88
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=134.52 Aligned_cols=121 Identities=20% Similarity=0.088 Sum_probs=81.7
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCC--CeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYP--FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~p--fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
....+|+|+|.+|||||||+++|++........+ ..+.......+.. ....+.+|||||+.+.. .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--------~~~~~~i~Dt~G~~~~~----~- 89 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT--------AAVKAQIWDTAGLERYR----A- 89 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT--------EEEEEEEEEESCCCTTC----T-
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC--------EEEEEEEEeCCCchhhh----h-
Confidence 4457999999999999999999998765432211 1111111111111 12478999999985431 1
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.....++.+|++++|+|++++...+....++.++..+. ....|+++|+||+|+...
T Consensus 90 --~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 90 --ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp --THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGG
T ss_pred --hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccc
Confidence 23455788999999999987665555555666665533 246899999999999764
No 89
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.57 E-value=6.6e-15 Score=131.96 Aligned_cols=120 Identities=19% Similarity=0.175 Sum_probs=78.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+.... ....+.+|||||..+.. ....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~-------~~~~ 87 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDG------ETCLLDILDTAGQEEYS-------AMRD 87 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETT------EEEEEEEEECCC----------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECC------EEEEEEEEECCChHHHH-------HHHH
Confidence 5899999999999999999997653 23444444333322232221 12358999999975431 1223
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.+|++++|+|+++....++...+..++..+.. ..+.|+++|+||+|+...
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~ 141 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTR 141 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCC
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcc
Confidence 457889999999999886666666666666665432 136899999999999764
No 90
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.56 E-value=1.1e-14 Score=130.83 Aligned_cols=115 Identities=23% Similarity=0.280 Sum_probs=77.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccce----eecCCCCCCccccccceEEecCCcccccccccCch
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLG----RLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g----~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
..+|+++|.+|||||||+++|++.... ...|..+ .+... ...+.++||||....
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~-------~~~~t~g~~~~~~~~~--------~~~l~i~Dt~G~~~~------- 73 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDIS-------HITPTQGFNIKSVQSQ--------GFKLNVWDIGGQRKI------- 73 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCE-------EEEEETTEEEEEEEET--------TEEEEEEECSSCGGG-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-------cccCcCCeEEEEEEEC--------CEEEEEEECCCCHHH-------
Confidence 368999999999999999999986432 1222222 22221 247899999997542
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...+..+++.+|++++|+|++++...+....++.++... ....+.|+++|+||+|+.....
T Consensus 74 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~ 134 (181)
T 1fzq_A 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE-EKLSCVPVLIFANKQDLLTAAP 134 (181)
T ss_dssp HHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTC-GGGTTCCEEEEEECTTSTTCCC
T ss_pred HHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECcCcccCCC
Confidence 233456678999999999998766555444333333211 1124689999999999987644
No 91
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.9e-15 Score=136.31 Aligned_cols=122 Identities=15% Similarity=0.077 Sum_probs=84.4
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCcc--CCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCch
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIA--DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGL 347 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia--~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl 347 (421)
....+|+|+|.+|||||||+++|++...... +...++.......+... ...+.+|||||..+.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~------- 85 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEK--------RVKLQIWDTAGQERY------- 85 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTT--------TEEEEEECHHHHHHC-------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCE--------EEEEEEEeCCChHHH-------
Confidence 4557999999999999999999998663221 11111111111111111 246999999996543
Q ss_pred hHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 348 GRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 348 ~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.......++.+|++++|+|++++...+....+..++..+.. .+.|+++|+||+|+....
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~ 144 (191)
T 3dz8_A 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEEER 144 (191)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGC
T ss_pred HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc
Confidence 22344567889999999999987777777777777776542 468999999999996543
No 92
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.56 E-value=7e-16 Score=136.23 Aligned_cols=123 Identities=16% Similarity=0.152 Sum_probs=80.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++........+.++.+.....+.... .....+.+|||||..+.. .+ ..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-----~~~~~~~~~Dt~G~~~~~----~~---~~ 74 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG-----NLNVTLQIWDIGGQTIGG----KM---LD 74 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETT-----TEEEEEEEEECTTCCTTC----TT---HH
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCC-----CCEEEEEEEECCCCcccc----ch---hh
Confidence 5899999999999999999998653221111111222222222211 012479999999975431 22 33
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~ 407 (421)
.+++.+|++++|+|++++.+.++...+..++..+.......| +++|+||+|+.+.
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 457889999999999987666666666666665422112456 7999999999753
No 93
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=6.5e-15 Score=132.67 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=82.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+.... ....+.+|||||..+.. .+ ..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~D~~G~~~~~----~~---~~ 84 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGG------KQYLLGLYDTAGQEDYD----RL---RP 84 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSS------CEEEEEEECCCCSSSST----TT---GG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECC------EEEEEEEEECCCCcchh----HH---HH
Confidence 5899999999999999999998742 23444454333322333221 12468999999976542 12 22
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.+|++++|+|++++.+.+... .+..++..+. .+.|+++|+||+|+...
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTC
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccc
Confidence 4578899999999998866555554 4666666653 36899999999999764
No 94
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.56 E-value=4.3e-15 Score=130.97 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=81.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++... ..+++.|+.......+..+. ....+.++||||..+. ..+..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~~~Dt~G~~~~----~~~~~--- 75 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDG------IPARLDILDTAGQEEF----GAMRE--- 75 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETT------EEEEEEEEECCCTTTT----SCCHH---
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECC------EEEEEEEEECCCchhh----HHHHH---
Confidence 5899999999999999999998742 34555555443333333221 1246899999997653 22333
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHH-HhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL-RMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL-~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+++.+|++++|+|+++....+....+..++ .... ..+.|+++|+||+|+....
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~ 130 (181)
T 2fn4_A 76 QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD--RDDFPVVLVGNKADLESQR 130 (181)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT--SSCCCEEEEEECGGGGGGC
T ss_pred HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccccccc
Confidence 3456799999999999766555555555554 3322 2468999999999997643
No 95
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.56 E-value=1.6e-15 Score=135.55 Aligned_cols=117 Identities=26% Similarity=0.459 Sum_probs=85.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~~ 350 (421)
.+|+|+|.+|||||||+++|++....+..+|++|.+...+.+... +..+.+|||||+.+.... .+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--------GEKFKVVDLPGVYSLTANSIDEIIARD 79 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--------TEEEEEEECCCCSCCSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--------CcEEEEEECCCcCccccccHHHHHHHH
Confidence 589999999999999999999877666788888888777776543 247899999998764211 1123333
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
++.. ..+|++++|+|+++ .+....+..++.. .+.|+++|+||+|+..
T Consensus 80 ~~~~-~~~~~~i~v~d~~~---~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 80 YIIN-EKPDLVVNIVDATA---LERNLYLTLQLME-----MGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHH-HCCSEEEEEEEGGG---HHHHHHHHHHHHT-----TTCCEEEEEECHHHHH
T ss_pred HHhc-cCCCEEEEEecchh---HHHHHHHHHHHHh-----cCCCEEEEEEhhhccc
Confidence 3322 45899999999874 3344445555544 4689999999999864
No 96
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.56 E-value=6.6e-15 Score=134.31 Aligned_cols=124 Identities=23% Similarity=0.162 Sum_probs=85.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|||.+|||||||+++|++........+.++.+.....+..+. ....+.+|||||..... ..+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~Dt~g~~~~~---~~~~~-- 91 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDK------EEVTLVVYDIWEQGDAG---GWLRD-- 91 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETT------EEEEEEEECCCCCSGGG---HHHHH--
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECC------EEEEEEEEecCCCccch---hhhHH--
Confidence 36899999999999999999987654444555555444333333221 12468899999975421 01222
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|++++.+.+.+..++.++..+.. ....|+++|+||+|+....
T Consensus 92 -~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~ 146 (195)
T 3cbq_A 92 -HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSR 146 (195)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTC
T ss_pred -HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccC
Confidence 335679999999999987666666667666665432 1368999999999997643
No 97
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.56 E-value=4.8e-15 Score=134.72 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=78.0
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+...+|+|+|.+|||||||+++|++........+....+.....+..+. ....+.+|||||..+. ..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~-------~~ 92 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDG------ERTVLQLWDTAGQERF-------RS 92 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETT------EEEEEEEEECTTCTTC-------HH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECC------EEEEEEEEECCCCcch-------hh
Confidence 3457999999999999999999998763221111111111111222111 1246899999996543 23
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
.....++.+|++++|+|++++...+....+.+++..+.. .+.|+++|+||+|+.
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccc
Confidence 345567889999999999987666666667777766532 368999999999986
No 98
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.56 E-value=7e-15 Score=152.17 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=88.4
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC----
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK---- 345 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~---- 345 (421)
...+|+++|.+|+|||||+|+|++.+. .+.++++||.+.....+... +..+.+|||||+.+......
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~--------~~~~~l~DT~G~~~~~~~~~~~e~ 265 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN--------QQEFVIVDTAGMRKKGKVYETTEK 265 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEET--------TEEEEETTGGGTTTBTTBCCCCSH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEEC--------CceEEEEECCCCCcCcccchHHHH
Confidence 457899999999999999999998764 35889999998877776643 24799999999876543211
Q ss_pred chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
......+.++++||++|+|+|+++.....+ ..+..++.. .++|+++|+||+|+.+..
T Consensus 266 ~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 266 YSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-----AGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-----TTCEEEEEEECGGGSCCC
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-----cCCCEEEEEEChhcCCCc
Confidence 122234567899999999999998665444 345555554 468999999999998654
No 99
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.55 E-value=1.3e-14 Score=131.52 Aligned_cols=116 Identities=27% Similarity=0.359 Sum_probs=81.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.+.. .+ .+|..+....+..+ +..+.++||||..+.. .+ +.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~----~~---~~ 85 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIG--------NIKFTTFDLGGHIQAR----RL---WK 85 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEET--------TEEEEEEECCCSGGGT----TS---GG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEEC--------CEEEEEEECCCCHHHH----HH---HH
Confidence 58999999999999999999987643 22 23444444444433 2478999999986542 12 22
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.+|++++|+|++++.+.+....+..++.... ...+.|+++|+||+|+...
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~ 139 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPNA 139 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTTC
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcCC
Confidence 44678999999999998766665555555443321 1246899999999999863
No 100
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.55 E-value=8.4e-16 Score=139.73 Aligned_cols=123 Identities=17% Similarity=0.138 Sum_probs=82.4
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
....+|+|+|.+|||||||+++|++........+.++.+.....+.... ....+.+|||||..+... +
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~-- 98 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG------KTIKLQIWDTAGQERFRT----I-- 98 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETT------EEEEEEEECCTTCTTCCC----C--
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECC------EEEEEEEEECCCcHhHHH----H--
Confidence 3457999999999999999999998765444344444444444443321 123689999999655422 1
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+++.+|++++|+|+++....+....++.++..+.. .+.|+++|+||+|+...
T Consensus 99 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 99 -TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp -SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCcc
Confidence 12346789999999999987766676667777765432 36899999999999754
No 101
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.55 E-value=5.3e-15 Score=134.61 Aligned_cols=124 Identities=17% Similarity=0.082 Sum_probs=82.3
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+...+|+|+|.+|||||||+++|++.... ..+..|+.......+.... ....+.+|||||..+... +
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~~----~-- 88 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGK------DEFHLHLVDTAGQDEYSI----L-- 88 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----------CEEEEEEEECCCCTTCC----C--
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECC------EEEEEEEEECCCccchHH----H--
Confidence 34579999999999999999999987644 3344444333333333221 124689999999765421 1
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
....++.+|++++|+|+++....+....+..++..+. ...+.|+++|+||+|+....
T Consensus 89 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~ 145 (201)
T 3oes_A 89 -PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH-GKTRVPVVLVGNKADLSPER 145 (201)
T ss_dssp -CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGC
T ss_pred -HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCcccc
Confidence 2245678999999999998666666666666665432 12368999999999997543
No 102
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.55 E-value=3.5e-15 Score=136.77 Aligned_cols=121 Identities=21% Similarity=0.166 Sum_probs=84.5
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++... ...+..|+.+.....+..+. ....+.++||||..+.. ...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~-------~~~ 95 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGLEDYD-------RLR 95 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-------CEEEEEEEEECCSGGGT-------TTG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECC------EEEEEEEEECCCchhhH-------HHH
Confidence 46899999999999999999997643 33445555444333333321 12357799999985532 112
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...++.+|++++|+|++++.+.++.. .+..++..+. .+.|+++|+||+|+....+
T Consensus 96 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHH
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchh
Confidence 34578899999999999876666654 5666776654 4689999999999976543
No 103
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.55 E-value=1.2e-14 Score=139.77 Aligned_cols=129 Identities=17% Similarity=0.101 Sum_probs=84.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
..+|+++|.+|+|||||+|+|++.... +.+++.+|..+....+... ...+.||||||+.+...........
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~l~iiDTpG~~~~~~~~~~~~~~ 110 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--------GFTLNIIDTPGLIEGGYINDMALNI 110 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--------TEEEEEEECCCSEETTEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--------CeEEEEEECCCCCCCccchHHHHHH
Confidence 468999999999999999999988753 4677777766555444332 2479999999997754332222222
Q ss_pred HHHh--cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRH--LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~--i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+.++ ...+|+++||+|++..........+..++.........+|+++|+||+|+.+.+
T Consensus 111 i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 111 IKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2222 247999999988865332222234555554431111226999999999997654
No 104
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.55 E-value=9.4e-15 Score=129.96 Aligned_cols=121 Identities=20% Similarity=0.156 Sum_probs=80.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+|+|.+|||||||+++|++... ...+..|+.......+..+. ....+.+|||||..+. ..+. .
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~----~~~~---~ 84 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYLKHTEIDN------QWAILDVLDTAGQEEF----SAMR---E 84 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETT------EEEEEEEEECCSCGGG----CSSH---H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeEEEEEeCC------cEEEEEEEECCCchhh----HHHH---H
Confidence 5899999999999999999997643 23343343332222222221 1235778999997553 2222 3
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+++.+|++++|+|++++.+.+....+..++..+. ...+.|+++|+||+|+.+..
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~ 139 (183)
T 3kkq_A 85 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK-DRESFPMILVANKVDLMHLR 139 (183)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TSSCCCEEEEEECTTCSTTC
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECCCchhcc
Confidence 44677999999999998766666666666554432 12468999999999997643
No 105
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.55 E-value=3.7e-15 Score=132.34 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=75.5
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++.+.. .+. .|.......+... ...+.++||||..+... .+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~-~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~~-------~~ 79 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEVV--TTK-PTIGFNVETLSYK--------NLKLNVWDLGGQTSIRP-------YW 79 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEE--EEC-SSTTCCEEEEEET--------TEEEEEEEEC----CCT-------TG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCcC--ccC-CcCccceEEEEEC--------CEEEEEEECCCCHhHHH-------HH
Confidence 468999999999999999999875531 111 1111111222221 24789999999865321 12
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..+++.+|++++|+|++++...+....++..+.... ...+.|+++|+||+|+.+...
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~ 136 (183)
T 1moz_A 80 RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPGALS 136 (183)
T ss_dssp GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTTCCC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCCCCC
Confidence 345688999999999998766665554444443221 135789999999999976543
No 106
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.55 E-value=1.8e-15 Score=138.01 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=79.6
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
....+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.++||||..+.. .+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~l~l~Dt~G~~~~~----~~-- 90 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG------KTVKLQIWDTAGQERFR----SV-- 90 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETT------EEEEEEEECCTTHHHHS----CC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECC------eeeEEEEEcCCCcHhHH----HH--
Confidence 4457999999999999999999998765443333333333223332221 12478999999975432 11
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+...++.+|++++|+|++++...+....++.++..+.. .+.|+++|+||+|+...
T Consensus 91 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 91 -TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPE 145 (200)
T ss_dssp -CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGG
T ss_pred -HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc
Confidence 23456789999999999987666666666666665432 46899999999999653
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.55 E-value=5.5e-15 Score=145.38 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=90.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|+|+|.+|||||||+++|++.. ..+.+++.+|.+...+.+.... ...+.+|||||..+.... -+....
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~~--~~~~~~ 74 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-------NMTLNLWDCGGQDVFMEN--YFTKQK 74 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-------TEEEEEEEECCSHHHHHH--HHTTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-------ceEEEEEECCCcHHHhhh--hhhhHH
Confidence 589999999999999999988874 3446788899888877765321 247999999997543100 001112
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
...++.+|++++|+|+++..+.+++..+.+++..+.....+.|+++|+||+|+..
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 3445789999999999988777777666555544321124689999999999987
No 108
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.54 E-value=5.3e-15 Score=133.77 Aligned_cols=124 Identities=23% Similarity=0.227 Sum_probs=60.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeee-eccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl-~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
..+|+|+|.+|||||||+++|++..... ..+..|+- +.....+..... .....+.+|||||+.+. ..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~-------~~ 88 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT----TVSVELFLLDTAGSDLY-------KE 88 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTS----SEEEEEEEEETTTTHHH-------HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCc----ccEEEEEEEECCCcHHH-------HH
Confidence 3689999999999999999999874333 34444442 344444443310 00246999999998543 22
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPFIVVLNKIDLPE 406 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kP~IIVlNK~Dl~~ 406 (421)
.+..+++.+|++++|+|++++.+.+....+..++..+... ....|+++|+||+|+..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 2345578899999999999876666666677777665421 23689999999999976
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.54 E-value=1.3e-14 Score=151.06 Aligned_cols=129 Identities=18% Similarity=0.237 Sum_probs=91.2
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+|||.||||||||+++|++.+. + ..++|.......+... ...+.++||||..+.. ..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~--~~~~T~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~-------~~ 382 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-V--TTIPTVGFNVETVTYK--------NVKFNVWDVGGQDKIR-------PL 382 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-C--CCCCCSSEEEEEEESS--------SCEEEEEEECCCGGGS-------GG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-C--CcCCccceeEEEEEeC--------CEEEEEEECCCcHHHH-------HH
Confidence 346899999999999999999998772 2 2344766666666654 2479999999976542 22
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHhCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQGIG 418 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~lG 418 (421)
+..+++.+|++|+|+|++++...+....++.++... ....++|+|+|+||+|+.+.....+....++
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~ 449 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMKPHEIQEKLG 449 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECCSSSSCCCHHHHHHHTT
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhh-hhcCCCcEEEEEECCCCCcCCCHHHHHHHhc
Confidence 446688999999999999876666655555544331 1224689999999999987544333333343
No 110
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.54 E-value=8.7e-15 Score=129.62 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=77.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.+... +..|+.+.....+..+. ....+.+|||||..+ .
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~------------~ 67 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDG------QTHLVLIREEAGAPD------------A 67 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETT------EEEEEEEEECSSSCC------------H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECC------EEEEEEEEECCCCch------------h
Confidence 589999999999999999999876432 22222211111222111 124689999999653 1
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLP 405 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kP~IIVlNK~Dl~ 405 (421)
.+++.+|++++|+|++++.+.+....+.+++..+.. ...+.|+++|+||+|+.
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 345679999999999987766666666556655422 12468999999999994
No 111
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.54 E-value=8.1e-15 Score=133.62 Aligned_cols=119 Identities=19% Similarity=0.196 Sum_probs=80.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++..... .+..|+.......+.... ....+.+|||||..+.. .+ ..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~---~~ 91 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDG------KQVELALWDTAGQEDYD----RL---RP 91 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETT------EEEEEEEECCCCSGGGT----TT---GG
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECC------EEEEEEEEECCCchhHH----HH---HH
Confidence 589999999999999999999876432 232232222212222111 12368999999975432 11 22
Q ss_pred HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|++++...+.. ..+..++..+. .+.|+++|+||+|+....
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDE 145 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCc
Confidence 357889999999999876655555 45666666643 368999999999998653
No 112
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.54 E-value=3.1e-15 Score=132.50 Aligned_cols=120 Identities=19% Similarity=0.150 Sum_probs=75.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++... ...+..|+.+.....+... .....+.+|||||..+.. .+ .
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~~~i~Dt~G~~~~~----~~---~ 73 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVN------GATVNLGLWDTAGQEDYN----RL---R 73 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------------CEEECCCC-CTTT----TT---G
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEEC------CEEEEEEEEECCCChhhh----hh---H
Confidence 36899999999999999999997653 2334444432222112111 112357899999975432 11 2
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+++.+|++++|+|++++.+.+... .+..++..+. .+.|+++|+||+|+.+..
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~ 128 (182)
T 3bwd_D 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDDK 128 (182)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCH
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcCc
Confidence 24567899999999998866666654 4666777654 368999999999987543
No 113
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=4.8e-15 Score=135.74 Aligned_cols=119 Identities=19% Similarity=0.196 Sum_probs=78.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++..... .+..|+.......+.... ....+.+|||||..+... + ..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~---~~ 91 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDG------KQVELALWDTAGQEDYDR----L---RP 91 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETT------EEEEEEEEECTTCTTCTT----T---GG
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECC------EEEEEEEEECCCcHHHHH----H---HH
Confidence 589999999999999999999876432 232333222212222111 124689999999765421 1 22
Q ss_pred HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..++.+|++++|+|++++.+.+.. ..+..++..+. .+.|+++|+||+|+....
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDE 145 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCH
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccc
Confidence 456889999999999876555555 45566666543 368999999999997653
No 114
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.54 E-value=2e-14 Score=140.04 Aligned_cols=84 Identities=18% Similarity=0.250 Sum_probs=54.0
Q ss_pred cceEEecCCccccccc------ccCchhHHHHHhcccCCEEEEEeeCCCCCC-hhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 014655 327 SEATLADLPGLIEGAH------LGKGLGRNFLRHLRRTRLLVHVIDAAAENP-VNDYRTVKEELRMYNPDYLERPFIVVL 399 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~------~~~gl~~~fL~~i~radvIl~VvD~s~~~~-~~~~~~l~~eL~~~~~~l~~kP~IIVl 399 (421)
.+++++||||+.+.+. ....+...+..+++.+|++++|+|++.... ..+...+..++.. .++|+++|+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~-----~~~~~i~v~ 205 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-----EGKRTIGVI 205 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-----SCSSEEEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC-----CCCcEEEEE
Confidence 4799999999976331 112244556678899999999999854332 2333334444432 468999999
Q ss_pred eCCCCCCCCC-chHHHH
Q 014655 400 NKIDLPEMYD-DSSSRQ 415 (421)
Q Consensus 400 NK~Dl~~~~e-~~~~l~ 415 (421)
||+|+....+ ..+.++
T Consensus 206 NK~Dl~~~~~~~~~~~~ 222 (315)
T 1jwy_B 206 TKLDLMDKGTDAMEVLT 222 (315)
T ss_dssp ECTTSSCSSCCCHHHHT
T ss_pred cCcccCCcchHHHHHHh
Confidence 9999987654 344443
No 115
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.54 E-value=9.5e-15 Score=132.60 Aligned_cols=119 Identities=19% Similarity=0.215 Sum_probs=75.2
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++.+.. .. ..|.......+... ...+.+|||||..+.. . .+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~----~---~~ 90 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYK--------NICFTVWDVGGQDKIR----P---LW 90 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEET--------TEEEEEEECC-----C----T---TH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEEC--------CEEEEEEECCCCHhHH----H---HH
Confidence 468999999999999999999876532 11 11222222223221 2479999999985431 1 23
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...++.+|++++|+|++++...+....++..+... ....+.|+++|+||+|+.....
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~ 147 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQE-DELRDAVLLVFANKQDMPNAMP 147 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcc-cccCCCeEEEEEECCCCCCCCC
Confidence 34568899999999999876555544444443321 1124689999999999976543
No 116
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.54 E-value=9.3e-15 Score=131.86 Aligned_cols=120 Identities=16% Similarity=0.078 Sum_probs=82.1
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+++|.+|||||||+++|++... ...+..|+.......+.... ....+.+|||||..+.. . .
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~----~---~ 87 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKN------EEFILHLWDTAGQEEYD----R---L 87 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETT------EEEEEEEEEECCSGGGT----T---T
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECC------EEEEEEEEECCCcHHHH----H---H
Confidence 346899999999999999999998764 23344443332222222211 12357999999965432 1 1
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
....++.+|++++|+|++++.+.++. ..+..++..+. .+.|+++|+||+|+...
T Consensus 88 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 88 RPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCT
T ss_pred hHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC
Confidence 23457789999999999987666554 45666666653 46899999999999753
No 117
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.53 E-value=1.1e-14 Score=132.98 Aligned_cols=116 Identities=26% Similarity=0.328 Sum_probs=75.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.+.. .+. +|..+..+.+..+ +..+.+|||||..+.. .+ +.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~-~t~~~~~~~~~~~--------~~~l~i~Dt~G~~~~~----~~---~~ 87 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QHV-PTLHPTSEELTIA--------GMTFTTFDLGGHIQAR----RV---WK 87 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEET--------TEEEEEEEECC----C----CG---GG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--ccC-CCCCceeEEEEEC--------CEEEEEEECCCcHhhH----HH---HH
Confidence 58999999999999999999876532 222 2444444444433 2478999999976532 12 22
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.+|++++|+|++++.+.+....+..++.... ...+.|+++|+||+|+...
T Consensus 88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~ 141 (198)
T 1f6b_A 88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEA 141 (198)
T ss_dssp GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTC
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCcccc
Confidence 45678999999999998766555555544443321 1246899999999999763
No 118
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=3e-14 Score=142.84 Aligned_cols=127 Identities=33% Similarity=0.512 Sum_probs=92.5
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC-chh-
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK-GLG- 348 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~-gl~- 348 (421)
....|+++|.+|||||||+|+|++....+.+++++|.+...+.+... ...+.++||||+.+...... .+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~ 237 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--------YFRYQIIDTPGLLDRPISERNEIEK 237 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--------TEEEEEEECTTTSSSCSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--------CceEEEEeCCCccccchhhhhHHHH
Confidence 44689999999999999999999988777889999988877765432 24689999999976432211 111
Q ss_pred HHHHHhcccCCEEEEEeeCCCCC--ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAEN--PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~--~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+......+|++++|+|+++.. ..+....+..++..... ++|+++|+||+|+....
T Consensus 238 ~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~ 296 (357)
T 2e87_A 238 QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEE 296 (357)
T ss_dssp HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHH
T ss_pred HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChH
Confidence 22333334699999999998765 45555556666655331 68999999999998654
No 119
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.53 E-value=8.1e-15 Score=150.98 Aligned_cols=125 Identities=29% Similarity=0.354 Sum_probs=88.0
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
...+|+|+|.+|+|||||+|+|++.... +.+++++|.++....+..... ..+.+|||||+.+..........
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-------~~l~liDTpG~~d~~~l~~~~~~ 105 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-------GPVTLVDTPGLDDVGELGRLRVE 105 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-------EEEEEEECSSTTCCCTTCCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-------CeEEEEECcCCCcccchhHHHHH
Confidence 3468999999999999999999998764 478899999888777765421 27999999999876544444445
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
..+..+..+|++|+|+|++ ..+....+..++..+ +.|+++|+||+|+......
T Consensus 106 ~~~~~l~~aD~vllVvD~~---~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~ 158 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDSA---PTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAE 158 (423)
T ss_dssp HHHHHHTSCSEEEEECSSS---CCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCT
T ss_pred HHHHHHhcCCEEEEEEeCC---ChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHH
Confidence 5677889999999999982 234445677777763 6899999999999876543
No 120
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.53 E-value=1.6e-14 Score=129.50 Aligned_cols=119 Identities=21% Similarity=0.220 Sum_probs=79.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|+..+.. ...| |.......+... ...+.++||||..+.... +
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~--------~~~~~~~Dt~G~~~~~~~-------~ 83 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYK--------NISFEVWDLGGQTGVRPY-------W 83 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEET--------TEEEEEEEECCSSSSCCC-------C
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEEC--------CEEEEEEECCCCHhHHHH-------H
Confidence 468999999999999999999865531 1111 222222222222 247899999998654221 1
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...++.+|++++|+|++++...+....++..+... ....+.|+++|+||+|+....+
T Consensus 84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~ 140 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE-DELRKSLLLIFANKQDLPDAAS 140 (189)
T ss_dssp SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTC-STTTTCEEEEEEECTTSTTCCC
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhh-hhcCCCeEEEEEECCCCcCCCC
Confidence 23467899999999999877666555444443321 1224689999999999987643
No 121
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1e-14 Score=132.08 Aligned_cols=120 Identities=19% Similarity=0.143 Sum_probs=82.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++.+... .+..|+.......+..+. ....+.+|||||..+ . ...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~-----~---~~~ 92 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDD------EVVSMEILDTAGQED-----T---IQR 92 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETT------EEEEEEEEECCCCCC-----C---HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECC------EEEEEEEEECCCCCc-----c---cch
Confidence 3689999999999999999999876432 233332222211122111 124689999999765 1 223
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+++.+|++++|+|++++.+.+....+..++..+.. ..+.|+++|+||+|+...
T Consensus 93 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 93 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGG
T ss_pred hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccc
Confidence 4556789999999999987666666666666665421 246899999999999764
No 122
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.4e-15 Score=137.76 Aligned_cols=122 Identities=18% Similarity=0.123 Sum_probs=80.3
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+|+|.+|||||||+++|++........+..+.+.....+.... ....+.+|||||..+... +
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~--- 78 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEG------KRIKAQIWDTAGQERYRA----I--- 78 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETT------EEEEEEEECCTTTTTTTC----C---
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECC------EEEEEEEEECCCccchhh----h---
Confidence 347899999999999999999998765443333333222222222221 123789999999755321 1
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
...+++.+|++|+|+|++++...+....+..++..+.. ...|+++|+||+|+...
T Consensus 79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGG
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccc
Confidence 23456789999999999987666666666677766532 46899999999999754
No 123
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.53 E-value=1.7e-14 Score=137.26 Aligned_cols=126 Identities=16% Similarity=0.102 Sum_probs=83.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCC-CC-eeeeccceeecCCCCCCccccccceEEecCCcccccccccCc---
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADY-PF-TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKG--- 346 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~-pf-TTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~g--- 346 (421)
..+|+|+|.+|||||||+|+|++....+..+ +. +|.....+.+... +..+.|+||||+.+.......
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------~~~i~iiDTpG~~~~~~~~~~~~~ 93 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--------NREIVIIDTPDMFSWKDHCEALYK 93 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--------TEEEEEEECCGGGGSSCCCHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--------CCEEEEEECcCCCCCCCCHHHHHH
Confidence 3689999999999999999999887555333 33 5655555544432 347999999999876443222
Q ss_pred -hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEe-CCCCCCC
Q 014655 347 -LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLN-KIDLPEM 407 (421)
Q Consensus 347 -l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlN-K~Dl~~~ 407 (421)
+...+...+..+|++|+|+|++. . ......++..+..+.......|.++|+| |+|+...
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~-~-~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 94 EVQRCYLLSAPGPHVLLLVTQLGR-Y-TSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTC-C-CHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCC-C-CHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 12333446788999999999985 2 2223334455554321112467788887 9999853
No 124
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.53 E-value=6.4e-15 Score=135.97 Aligned_cols=120 Identities=21% Similarity=0.173 Sum_probs=71.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+++|.+|||||||+++|++.... ..+..|+.+.....+.... ....+.+|||||..+.. .+ .
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~l~Dt~G~~~~~----~~---~ 99 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKG------KPVHLHIWDTAGQDDYD----RL---R 99 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETT------EEEEEEEEEC-----------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECC------EEEEEEEEECCCchhhh----HH---H
Confidence 368999999999999999999976532 2333344333222222211 12368999999975431 11 2
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
...+..+|++++|+|++++.+.+... .+..++..+. .+.|+++|+||+|+....
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCH
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccc
Confidence 23467899999999999766555553 4566666554 368999999999997654
No 125
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.7e-14 Score=129.56 Aligned_cols=125 Identities=18% Similarity=0.190 Sum_probs=75.1
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+++|.+|||||||+++|++..... ..++..+.... .+. ...+.+|||||+.+.. ..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~~~-~~~--------~~~~~l~Dt~G~~~~~---~~~~~~ 111 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA-DYD--------GSGVTLVDFPGHVKLR---YKLSDY 111 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCC--------CTTCSEEEETTCCBSS---CCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCceee-eec--------CCeEEEEECCCCchHH---HHHHHH
Confidence 44689999999999999999999876322 01111121111 111 2468999999986542 222333
Q ss_pred HHHhcccCCEEEEEeeCC-CCCChhhHHHHHHHHHhc-CC-CCCCCCEEEEEeCCCCCCCCCc
Q 014655 351 FLRHLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMY-NP-DYLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s-~~~~~~~~~~l~~eL~~~-~~-~l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
+...++.+|++++|+|++ +.........++..+... .. .....|+++|+||+|+....+.
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 344566799999999998 433333333332222211 00 1136899999999999876543
No 126
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.52 E-value=3.3e-14 Score=130.17 Aligned_cols=123 Identities=21% Similarity=0.122 Sum_probs=76.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH-H
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR-N 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~-~ 350 (421)
..+|+++|.+|||||||+++|++.. ....++.++.+ ...+..+.. ....+.+|||||..+. .. .
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~~~--~~~~~~~~~-----~~~~~~i~Dt~G~~~~-------~~~~ 71 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDS--SAIYKVNNN-----RGNSLTLIDLPGHESL-------RFQL 71 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCSCE--EEEEECSST-----TCCEEEEEECCCCHHH-------HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-cccccCCccee--eEEEEecCC-----CccEEEEEECCCChhH-------HHHH
Confidence 3689999999999999999999876 33445433322 222332210 0246999999998643 11 1
Q ss_pred HHHhcccCCEEEEEeeCCCCC-Chh-hHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAEN-PVN-DYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~-~~~-~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
...+++.+|++++|+|+++.. ... ..+.+..++..........|+++|+||+|+.....
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 132 (214)
T 2fh5_B 72 LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS 132 (214)
T ss_dssp HHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred HHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc
Confidence 223478899999999998621 111 12223333332211224689999999999987654
No 127
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.52 E-value=7.2e-15 Score=134.43 Aligned_cols=118 Identities=21% Similarity=0.174 Sum_probs=82.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+..+. ....+.+|||||..+... + ..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~---~~ 75 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDG------QIVNLGLWDTAGQEDYSR----L---RP 75 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSS------CEEEEEEECCCCCCCCCC---------C
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECC------EEEEEEEEECCCcHHHHH----H---HH
Confidence 5899999999999999999997653 23444444333322332221 124789999999865421 1 22
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+++.+|++++|+|++++.+.+... .|..++..+. .+.|+++|+||+|+...
T Consensus 76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTC
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeCHHhhhC
Confidence 3578899999999999866665554 5666776654 36899999999998754
No 128
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.52 E-value=2.7e-14 Score=147.00 Aligned_cols=124 Identities=26% Similarity=0.285 Sum_probs=85.0
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-C---
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-K--- 345 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-~--- 345 (421)
...+|+|||.||||||||+|+|++.... ++++++||.++..+.+..+ +..+.++||||+....... .
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~--------g~~~~l~Dt~G~~~~~~~~~~~~e 250 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID--------GRKYVFVDTAGLRRKSRVEPRTVE 250 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET--------TEEEEESSCSCC-----------C
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC--------CEEEEEEECCCCccccccchhhHH
Confidence 3468999999999999999999998764 5899999999988877654 2468999999985432211 0
Q ss_pred -chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 346 -GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 346 -gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
-.....+.+++.+|++++|+|++.....++. .+...+.. .++|+++|+||+|+.+.+
T Consensus 251 ~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-----~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 251 KYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-----RGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp CSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCEEEEEEECGGGSTTG
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECccCCCch
Confidence 0112235678899999999999876665543 34455554 468999999999997654
No 129
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.51 E-value=3.2e-14 Score=130.56 Aligned_cols=128 Identities=15% Similarity=0.110 Sum_probs=79.5
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCC----CccccccceEEecCCcccccccccC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTL----GAEKYSSEATLADLPGLIEGAHLGK 345 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~----~~~~~~~~i~iiDtPGlie~a~~~~ 345 (421)
....+|+|+|.+|||||||+++|++........+..+.+.....+...... ........+.||||||..+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----- 97 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF----- 97 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-----
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-----
Confidence 345799999999999999999999876432222211122222122211000 00001246999999996542
Q ss_pred chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCC--CCCCEEEEEeCCCCCCC
Q 014655 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY--LERPFIVVLNKIDLPEM 407 (421)
Q Consensus 346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l--~~kP~IIVlNK~Dl~~~ 407 (421)
...+..+++.+|++|+|+|+++.... ..+..++..+.... ...|+++|+||+|+...
T Consensus 98 --~~~~~~~~~~~d~iilV~D~~~~~s~---~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 98 --RSLTTAFFRDAMGFLLMFDLTSQQSF---LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp --HHHHHHHHTTCCEEEEEEETTCHHHH---HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred --HhHHHHHhcCCCEEEEEEECcCHHHH---HHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 23345667899999999999875443 34444555443222 46899999999999764
No 130
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.51 E-value=1.5e-14 Score=132.93 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=79.1
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
..+|+|+|.+|||||||+|+|++..... .....++....... ... .....+.+|||||..+.. .+..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~------~~~~~~~l~Dt~G~~~~~----~~~~ 79 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFL-DDQ------GNVIKFNVWDTAGQEKKA----VLKD 79 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEE-BTT------SCEEEEEEEEECSGGGTS----CCCH
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEE-eCC------CcEEEEEEEecCCchhhc----hHHH
Confidence 4689999999999999999999765332 12222222111111 111 011368999999976542 1222
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+..+|++++|+|+++..+.++...+..++..+.. .+.|+++|+||+|+....
T Consensus 80 ---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~ 133 (218)
T 4djt_A 80 ---VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQ 133 (218)
T ss_dssp ---HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC---
T ss_pred ---HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccc
Confidence 346789999999999987666666666666665432 358999999999998653
No 131
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.51 E-value=1.9e-14 Score=128.97 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=79.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.... ....+.+|||||..+... +. .
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~----~~---~ 73 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDT------QRIELSLWDTSGSPYYDN----VR---P 73 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSS------CEEEEEEEEECCSGGGTT----TG---G
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECC------EEEEEEEEECCCChhhhh----hH---H
Confidence 58999999999999999999986532 2233332222222222221 124689999999755321 21 2
Q ss_pred HhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++.+|++++|+|++++.+.+.. ..+..++..+. .+.|+++|+||+|+..
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGG
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhc
Confidence 346889999999999986655555 45666666654 3689999999999974
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.50 E-value=2.1e-14 Score=132.64 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=85.5
Q ss_pred ceecccCCCCCChhHHHHHHh-cCCCC-ccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAIT-HAKPD-IADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt-~~~~~-ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.+|+++|.+|||||||++++. +.... ..+.+++|.......+... ...+.+|||||..... .+..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------~~~~~i~Dt~G~~~~~----~~~~- 82 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--------PIKFNVWDTAGQEKFG----GLRD- 82 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTE--------EEEEEEEEECSGGGTS----CCCH-
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE--------EEEEEEEeCCChHHHh----HHHH-
Confidence 689999999999999999954 33222 3566666766555544322 2478999999975432 2222
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+..+|++++|+|+++....+....+..++..+. .+.|+++|+||+|+....
T Consensus 83 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 83 --GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp --HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCS
T ss_pred --HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccccc
Confidence 34678999999999998766667667777776654 368999999999997643
No 133
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.49 E-value=3.7e-14 Score=131.16 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=82.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|+|.+|||||||+++|++.... ..+..|+.......+.... ....+.+|||||..+.. .+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~~--- 92 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEE------QRVELSLWDTSGSPYYD----NVR--- 92 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--------CEEEEEEEEECCSGGGT----TTG---
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECC------EEEEEEEEECCCCHhHH----HHH---
Confidence 368999999999999999999987643 3333333322222222221 12478999999976542 122
Q ss_pred HHhcccCCEEEEEeeCCCCCChhh-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVND-YRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~-~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
...+..+|++|+|+|++++.+.+. ...|..++..+. .+.|+++|+||+|+..
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGG
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 234678999999999998776666 566777777764 3689999999999975
No 134
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.49 E-value=2.6e-14 Score=128.98 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=79.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+|+|.+|||||||+++|++... ...+..|+.+.....+... .....+.+|||||..+.. .+ .
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~----~~----~ 86 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVD------HQPVHLRVMDTADLDTPR----NC----E 86 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEET------TEEEEEEEEECCC---CC----CT----H
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEEC------CEEEEEEEEECCCCCcch----hH----H
Confidence 6899999999999999999998762 2344444433221122111 112468899999976542 12 2
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP-DYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~-~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+..+|++++|+|++++.+.+....+..++..+.. .....|+++|+||+|+...
T Consensus 87 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY 142 (187)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence 456789999999999976666666666666655310 0136899999999999654
No 135
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.24 E-value=2e-15 Score=137.62 Aligned_cols=122 Identities=20% Similarity=0.131 Sum_probs=81.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
+...+|+++|.+|||||||+++|++... ...+..|+.+.....+..+ .....+.+|||||..+.. .
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~------~~~~~l~i~Dt~G~~~~~-------~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVD------GKPVNLGLWDTAGQEDYD-------R 93 (204)
Confidence 3456899999999999999999986543 2333444433322222221 112357799999976532 1
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.....++.+|++++|+|++++.+.++.. .+..++..+. .+.|+++|+||+|+....
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDK 150 (204)
Confidence 2234467899999999999877666654 4555555432 268999999999997643
No 136
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.49 E-value=2.9e-14 Score=131.33 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=81.3
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
...+|+++|.+|||||||+++|++.... ..+..|+.......+..+. ....+.+|||||..+.. .+.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~~----~~~-- 93 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDT------QRIELSLWDTSGSPYYD----NVR-- 93 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSS------SEEEEEEEEECCSGGGT----TTG--
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECC------EEEEEEEEeCCCcHhhh----HHH--
Confidence 3468999999999999999999987543 2333333222222222221 12478999999976532 122
Q ss_pred HHHhcccCCEEEEEeeCCCCCChhhH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAENPVNDY-RTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~~~~~~-~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
...++.+|++++|+|++++.+.+.. ..|..++..+. .+.|+++|+||+|+..
T Consensus 94 -~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 94 -PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp -GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGG
T ss_pred -HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhcc
Confidence 2346889999999999986655555 45666676654 3689999999999974
No 137
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.49 E-value=4e-14 Score=128.51 Aligned_cols=123 Identities=18% Similarity=0.152 Sum_probs=77.4
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
..+|+++|.+|||||||++++++..... ....+++... ...+... ....+.+|||||..+... +..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~l~i~Dt~G~~~~~~----~~~ 87 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY-KDDISNS-------SFVNFQIWDFPGQMDFFD----PTF 87 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCE-EEEECCT-------TSCCEEEEECCSSCCTTC----TTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCcceeeecccccee-eeeccCC-------CeeEEEEEECCCCHHHHh----hhh
Confidence 4689999999999999999998853221 0111111110 0011111 124799999999755311 110
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
....+++.+|++|+|+|+++. ..+.+..+..++........+.|+++|+||+|+...
T Consensus 88 ~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 88 DYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp CHHHHHHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred hcccccccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 003456789999999999976 455556666666553111247899999999998764
No 138
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.48 E-value=3.9e-14 Score=136.66 Aligned_cols=134 Identities=19% Similarity=0.217 Sum_probs=79.4
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCC------ccCCCC----------------------eeeeccceee-------c
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPD------IADYPF----------------------TTLMPNLGRL-------D 315 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~------ia~~pf----------------------TTl~p~~g~v-------~ 315 (421)
..++|+++|.+|||||||+|+|++.+.. +...|. ||.+.....+ .
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 3479999999999999999999988743 233343 3322110000 0
Q ss_pred CC--CCCCcc-------ccccceEEecCCccccccc--ccC----chhHHHHHhcccCCEEE-EEeeCCCCCChhhHHHH
Q 014655 316 GD--PTLGAE-------KYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHLRRTRLLV-HVIDAAAENPVNDYRTV 379 (421)
Q Consensus 316 ~~--~~~~~~-------~~~~~i~iiDtPGlie~a~--~~~----gl~~~fL~~i~radvIl-~VvD~s~~~~~~~~~~l 379 (421)
.. ...... .....+++|||||+.+... +.. ........+++.++.++ +|+|++......+...+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 00 000000 0024799999999976431 012 23334456677777665 79999865433333234
Q ss_pred HHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 380 KEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 380 ~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+++.. .+.|+++|+||+|+.+..+
T Consensus 185 ~~~~~~-----~~~~~i~V~NK~Dl~~~~~ 209 (299)
T 2aka_B 185 AKEVDP-----QGQRTIGVITKLDLMDEGT 209 (299)
T ss_dssp HHHHCT-----TCSSEEEEEECGGGSCTTC
T ss_pred HHHhCC-----CCCeEEEEEEccccCCCCc
Confidence 444432 4689999999999986544
No 139
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.48 E-value=2.4e-14 Score=137.77 Aligned_cols=119 Identities=28% Similarity=0.424 Sum_probs=85.3
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccc--cCchhH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL--GKGLGR 349 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~--~~gl~~ 349 (421)
..+|+|+|.+|||||||+|+|++....+.+++++|.+...+.+... +..+.++||||+.+.... ...+.+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--------~~~~~l~DtpG~~~~~~~~~~~~~~~ 74 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--------EKEFLVVDLPGIYSLTAHSIDELIAR 74 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--------TEEEEEEECCCCSCCCSSCHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--------CceEEEEeCCCccccccCCHHHHHHH
Confidence 3589999999999999999999988777889999988877776643 246999999998764321 111233
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.|+. .+.+|++++|+|+++. ... ..+...+... ...|+++|+||+|+..
T Consensus 75 ~~~~-~~~~d~vi~v~D~~~~--~~~-~~~~~~~~~~----~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 75 NFIL-DGNADVIVDIVDSTCL--MRN-LFLTLELFEM----EVKNIILVLNKFDLLK 123 (271)
T ss_dssp HHHH-TTCCSEEEEEEEGGGH--HHH-HHHHHHHHHT----TCCSEEEEEECHHHHH
T ss_pred Hhhh-ccCCcEEEEEecCCcc--hhh-HHHHHHHHhc----CCCCEEEEEEChhcCc
Confidence 3322 3689999999999863 222 2333344332 1289999999999754
No 140
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.48 E-value=7.5e-14 Score=125.96 Aligned_cols=112 Identities=19% Similarity=0.102 Sum_probs=76.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
.+|+|+|.+|||||||+++|++........+ |.......+..+. ....+.+|||||..+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~------~~~~l~i~Dt~G~~~~------------ 80 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDG------QSYLLLIRDEGGPPEL------------ 80 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETT------EEEEEEEEECSSSCCH------------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECC------EEEEEEEEECCCChhh------------
Confidence 5899999999999999999988764321111 1211112222221 1246788999997542
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
++++.+|++++|+|++++.+.+....+..++..+. ...+.|+++|+||+|+.
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 81 QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAIS 132 (184)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCB
T ss_pred heecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccc
Confidence 15677999999999998766666666666666542 12468999999999995
No 141
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.48 E-value=5.7e-14 Score=135.46 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=72.7
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCC------CeeeeccceeecCCCCCCccccccceEEecCCccccccccc--
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-- 344 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~p------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-- 344 (421)
.+|++||.+|||||||+|+|++.+....+++ .+|............ ......++|+||||+.+.....
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE----GGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC------CCEEEEEEECCCCSCCSCCTTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec----CCeEEEEEEEECCCccccccchhh
Confidence 5899999999999999999998887665553 334333322222110 0112379999999985432211
Q ss_pred -Cchh-------HHHHHh----------cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 345 -KGLG-------RNFLRH----------LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 345 -~gl~-------~~fL~~----------i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..+. ..++.. -.++|+++|++|.+..........++.++.. .+|+|+|+||+|+..
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 158 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence 1111 222222 1237899999987753322222334444442 689999999999976
Q ss_pred CCC
Q 014655 407 MYD 409 (421)
Q Consensus 407 ~~e 409 (421)
..+
T Consensus 159 ~~e 161 (274)
T 3t5d_A 159 PEE 161 (274)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 142
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.46 E-value=6e-14 Score=139.41 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=81.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|+|.+|||||||+++|++.+. +..+ .|.......+... ...+.|+||||..+.. .+ .
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~--pT~~~~~~~~~~~--------~~~l~i~Dt~G~~~~~----~~---~ 226 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEI-VTTI--PTIGFNVETVEYK--------NISFTVWDVGGQDKIR----PL---W 226 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCC-EEEE--EETTEEEEEEEET--------TEEEEEEECC-----C----CS---H
T ss_pred cceEEEECCCCccHHHHHHHHhCCCC-CCcc--cccceEEEEEecC--------cEEEEEEECCCCHhHH----HH---H
Confidence 34899999999999999999987663 2222 2444344444332 2479999999965431 22 3
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCCchHHHHh
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYDDSSSRQG 416 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~~~~l~~ 416 (421)
...++.+|++|+|+|+++....+....++..+... ....+.|+++|+||+|+....+..+..+.
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilV~NK~Dl~~~~~~~~i~~~ 290 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMNAAEITDK 290 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhh-hccCCCeEEEEEECccCCcccCHHHHHHH
Confidence 34567899999999999887776655444443321 11246899999999999876544433333
No 143
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.45 E-value=6e-14 Score=136.51 Aligned_cols=122 Identities=21% Similarity=0.187 Sum_probs=85.3
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
++...+|+++|.+|+|||||++++++... ...+..|+.+.....+..+. ....+.+|||||..+.. .+
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~----~~- 219 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDG------KPVNLGLWDTAGLEDYD----RL- 219 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETT------EEEEEEEEEECCCGGGT----TT-
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECC------EEEEEEEEeCCCchhhh----HH-
Confidence 45567999999999999999999997653 34455555544433333221 12356799999976542 11
Q ss_pred HHHHHhcccCCEEEEEeeCCCCCChhhHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 349 RNFLRHLRRTRLLVHVIDAAAENPVNDYR-TVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 349 ~~fL~~i~radvIl~VvD~s~~~~~~~~~-~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
....+..+|++++|+|++++.+.++.. .+..++..+.. +.|+++|+||+|+...
T Consensus 220 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 220 --RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 274 (332)
T ss_dssp --GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC
T ss_pred --HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc
Confidence 224578899999999999866555554 45566666542 6899999999999654
No 144
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=3.7e-13 Score=123.50 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
.++|+|+|.+|+|||||+++|++..... ..+..++... . ....+.++||||+.+.. .+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~l~Dt~G~~~~~----~~~~ 73 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-Y-------------DGSGVTLVDFPGHVKLR----YKLS 73 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-G-------------GGSSCEEEECCCCGGGT----HHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-e-------------eCceEEEEECCCcHHHH----HHHH
Confidence 3689999999999999999999876322 1222221111 0 12468999999986541 2233
Q ss_pred HHHH-hcccCCEEEEEeeCC-CCCChhhHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCCCC
Q 014655 350 NFLR-HLRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNP--DYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 350 ~fL~-~i~radvIl~VvD~s-~~~~~~~~~~l~~eL~~~~~--~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+++ .+..+|++++|+|++ +.........+..++..... ...+.|+++|+||+|+....+
T Consensus 74 ~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 74 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 137 (218)
T ss_dssp HHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred HHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence 3332 234589999999998 65555544444433322100 114689999999999987654
No 145
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.45 E-value=9.5e-14 Score=141.71 Aligned_cols=101 Identities=33% Similarity=0.539 Sum_probs=83.1
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCC-C-------Cc-cccccceEEecCCccc
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPT-L-------GA-EKYSSEATLADLPGLI 338 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~-~-------~~-~~~~~~i~iiDtPGli 338 (421)
++....|+|||.||||||||+|+|++... .++++||||++|+.|.+..... . .. ......+.++||||+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 34456899999999999999999999887 6799999999999998765320 0 00 0001258999999999
Q ss_pred ccccccCchhHHHHHhcccCCEEEEEeeCCC
Q 014655 339 EGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA 369 (421)
Q Consensus 339 e~a~~~~gl~~~fL~~i~radvIl~VvD~s~ 369 (421)
.+++..++++..|+.+++.+|++++|+|+..
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9998889999999999999999999999875
No 146
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.44 E-value=3e-13 Score=142.54 Aligned_cols=121 Identities=23% Similarity=0.295 Sum_probs=83.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCC------CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK------PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~------~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~ 345 (421)
..+|+|||.||||||||+++|++.+ +.++...+++..++.+.+..... .....+.++||||..+. .
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~----~~~~~~~i~Dt~G~e~~----~ 112 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDE----LKECLFHFWDFGGQEIM----H 112 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCST----TTTCEEEEECCCSCCTT----T
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCC----CceEEEEEEECCcHHHH----H
Confidence 3689999999999999999999876 33334444445555545443311 11357999999995443 2
Q ss_pred chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
.+...| ++.+|++|+|+|+++. ++...+..++..+.+ +.|+|+|+||+|+....+
T Consensus 113 ~~~~~~---l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~ 167 (535)
T 3dpu_A 113 ASHQFF---MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYN 167 (535)
T ss_dssp TTCHHH---HHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCC
T ss_pred HHHHHH---ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccc
Confidence 234444 4569999999999753 566778888888763 589999999999986544
No 147
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.44 E-value=2.2e-13 Score=121.37 Aligned_cols=116 Identities=27% Similarity=0.260 Sum_probs=76.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-------C
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG-------K 345 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~-------~ 345 (421)
.+|+++|.+|||||||+++|++........|++|.......+ ..+.++||||+....... .
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~------------~~~~l~Dt~G~~~~~~~~~~~~~~~~ 69 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW------------KNHKIIDMPGFGFMMGLPKEVQERIK 69 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE------------TTEEEEECCCBSCCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec------------CCEEEEECCCccccccCCHHHHHHHH
Confidence 589999999999999999999987666667766655443322 158999999964321100 1
Q ss_pred chhHHHHHh-cccCCEEEEEeeCCCCCChhhH-HH------------HHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 346 GLGRNFLRH-LRRTRLLVHVIDAAAENPVNDY-RT------------VKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 346 gl~~~fL~~-i~radvIl~VvD~s~~~~~~~~-~~------------l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+...+++. ...++++++|+|.++ .... .. +...+.. .+.|+++|+||+|+....
T Consensus 70 ~~~~~~~~~~~~~~~~v~~v~d~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 70 DEIVHFIEDNAKNIDVAVLVVDGKA---APEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHHHHHHGGGCCEEEEEEETTH---HHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCSCH
T ss_pred HHHHHHHHhhhccCCEEEEEEcchh---hhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccCcH
Confidence 122334444 667888888888753 2111 11 2222222 368999999999998753
No 148
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.44 E-value=1.1e-13 Score=146.97 Aligned_cols=134 Identities=21% Similarity=0.319 Sum_probs=84.9
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCC---ccCCCCeeeeccceeecCCC-------CC------C---ccccc----
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPD---IADYPFTTLMPNLGRLDGDP-------TL------G---AEKYS---- 326 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~---ia~~pfTTl~p~~g~v~~~~-------~~------~---~~~~~---- 326 (421)
...+.|+|+|.+|||||||+|+|++.+.. +++.|.||... +++.... .. . ...++
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 34578999999999999999999998863 56777765421 1111100 00 0 00000
Q ss_pred -------------cceEEecCCccccccc--ccCc--hhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC
Q 014655 327 -------------SEATLADLPGLIEGAH--LGKG--LGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD 389 (421)
Q Consensus 327 -------------~~i~iiDtPGlie~a~--~~~g--l~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~ 389 (421)
..++|+||||+.+... ..+. +.......+.++|++|+|+|++.....+....+.+.+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---- 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---- 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence 3689999999976322 1222 223344567899999999999875444444444444433
Q ss_pred CCCCCEEEEEeCCCCCCCCCc
Q 014655 390 YLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 390 l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
...|+++|+||+|+...++.
T Consensus 217 -~~~pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVETQQL 236 (550)
T ss_dssp -CGGGEEEEEECGGGSCHHHH
T ss_pred -cCCCEEEEEECCCccCHHHH
Confidence 35789999999999876543
No 149
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.43 E-value=2.4e-13 Score=127.52 Aligned_cols=120 Identities=19% Similarity=0.142 Sum_probs=80.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|+|||.+|||||||+++++..... ..|..|. .+-....+.... ....+.||||+|..+.. .+.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~-~~~~~Tig~d~~~k~~~~~~------~~v~l~iwDtaGqe~~~----~l~--- 79 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLED------RTIRLQLWDTAGLERFR----SLI--- 79 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSS------CEEEEEEECCSCTTTCG----GGH---
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCC-CCcCCccceEEEEEEEEecc------eEEEEEEEECCCchhhh----hHH---
Confidence 48999999999999999999876522 2222111 111111122111 12468999999976542 232
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
..+++.++++++|+|+++..+++.+..++.++..+.. .+.|+++|.||+|+.+..
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r 134 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKR 134 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGC
T ss_pred HHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcC
Confidence 2446889999999999998888888888887766543 468999999999997643
No 150
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.42 E-value=3.3e-13 Score=137.48 Aligned_cols=126 Identities=24% Similarity=0.276 Sum_probs=82.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeecccee-----ecCCCCC---Cc---cccccceEEecCCccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGR-----LDGDPTL---GA---EKYSSEATLADLPGLIEG 340 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~-----v~~~~~~---~~---~~~~~~i~iiDtPGlie~ 340 (421)
.+|+++|.+|+|||||+++|++..... ..++.+|....... +...... .. ......+.++||||+.+
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~- 87 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV- 87 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG-
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH-
Confidence 589999999999999999999864322 23333332111000 0000000 00 00114799999999644
Q ss_pred ccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 341 AHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 341 a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
+.......+..+|++++|+|+++..+..+...+...+..+. .+|+++|+||+|+.+.++
T Consensus 88 ------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~----~~~iivviNK~Dl~~~~~ 146 (403)
T 3sjy_A 88 ------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG----VKNLIIVQNKVDVVSKEE 146 (403)
T ss_dssp ------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT----CCCEEEEEECGGGSCHHH
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC----CCCEEEEEECccccchHH
Confidence 34556777889999999999998765555555555666543 268999999999987543
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.42 E-value=4.4e-13 Score=138.37 Aligned_cols=116 Identities=22% Similarity=0.184 Sum_probs=78.5
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPT 319 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~ 319 (421)
...+|+++|.+|+|||||+++|+.....+. ..+++|.+.....+...
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~-- 93 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE-- 93 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC--
Confidence 446899999999999999999965432221 11355666555554433
Q ss_pred CCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCCh------hhHHHHHHHHHhcCCCCCCC
Q 014655 320 LGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLER 393 (421)
Q Consensus 320 ~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~k 393 (421)
...++||||||+.+. .......+..||++|+|||+++.... .+.......+.. .+.
T Consensus 94 ------~~~~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-----~~v 155 (439)
T 3j2k_7 94 ------KKHFTILDAPGHKSF-------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-----AGV 155 (439)
T ss_pred ------CeEEEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-----cCC
Confidence 247999999997543 34455667889999999999876431 122223333333 346
Q ss_pred C-EEEEEeCCCCCC
Q 014655 394 P-FIVVLNKIDLPE 406 (421)
Q Consensus 394 P-~IIVlNK~Dl~~ 406 (421)
| +|+|+||+|+..
T Consensus 156 ~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 156 KHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEeecCCCcc
Confidence 6 899999999965
No 152
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=2.9e-13 Score=126.27 Aligned_cols=121 Identities=21% Similarity=0.153 Sum_probs=77.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
..+|+|||.+|||||||++++++....+ ..++.++.+.....+..+. ....+.++||+|.... ..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~------~~~~l~~~Dt~g~~~~--------~~ 102 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG------ESATIILLDMWENKGE--------NE 102 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETT------EEEEEEEECCTTTTHH--------HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECC------eeeEEEEeecCCCcch--------hh
Confidence 4689999999999999999999765433 3344333222222222211 1235789999996431 12
Q ss_pred HHH--hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 351 FLR--HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 351 fL~--~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
++. +.+.+|++++|+|+++..+++....++.++..... ..+.|+++|+||+|+.+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~ 160 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRC 160 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGG
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcC
Confidence 222 24568999999999987666666666666654321 136899999999999753
No 153
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.40 E-value=6.8e-13 Score=132.89 Aligned_cols=136 Identities=21% Similarity=0.218 Sum_probs=80.9
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccc-------------eeecCCCC-----------------
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNL-------------GRLDGDPT----------------- 319 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~-------------g~v~~~~~----------------- 319 (421)
..++.|+|||.+|||||||+|+|++..........+|..|.. +.+...+.
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 456799999999999999999999976422111112211111 11100000
Q ss_pred ---------CCc--------cccccceEEecCCcccccccc--c----CchhHHHHHhcccCCEEEEEeeCCCCCChhhH
Q 014655 320 ---------LGA--------EKYSSEATLADLPGLIEGAHL--G----KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDY 376 (421)
Q Consensus 320 ---------~~~--------~~~~~~i~iiDtPGlie~a~~--~----~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~ 376 (421)
... ......+++|||||+.+.... . ..+...+..+++.+|++++|+|++..+...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 000 000235899999999875321 1 122344567789999999999986544322
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 377 RTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 377 ~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..+...+..+.+ .++|+++|+||+|+.+...
T Consensus 190 ~~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 190 SDAIKISREVDP--SGDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp CHHHHHHHHSCT--TCTTEEEEEECGGGCCTTC
T ss_pred HHHHHHHHHhcc--cCCCEEEEEeCCccCCCcc
Confidence 123334444433 4679999999999986543
No 154
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.40 E-value=3.5e-13 Score=146.66 Aligned_cols=129 Identities=19% Similarity=0.180 Sum_probs=85.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-cCCCCe--------------eeecccee-------------ecCCC---
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFT--------------TLMPNLGR-------------LDGDP--- 318 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfT--------------Tl~p~~g~-------------v~~~~--- 318 (421)
+...+|+|+|.+|||||||+|+|++.+..+ +..|.| |.+...+. +....
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 456789999999999999999999987654 555655 22110000 00000
Q ss_pred -------------------CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHH
Q 014655 319 -------------------TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTV 379 (421)
Q Consensus 319 -------------------~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l 379 (421)
..+.......+.|+||||+.+... .......+++.||++|||+|++++....+...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l 222 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPCTLGERRYL 222 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH
Confidence 000000003699999999986421 234455778899999999999887766666555
Q ss_pred HHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 380 KEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 380 ~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+.+.. ...|+++|+||+|+...
T Consensus 223 ~~~l~~-----~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 223 ENYIKG-----RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHTTT-----SCCCEEEEEECGGGGGG
T ss_pred HHHHHh-----hCCCEEEEEECcccccc
Confidence 544433 35789999999998654
No 155
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.39 E-value=4.1e-13 Score=122.08 Aligned_cols=122 Identities=20% Similarity=0.130 Sum_probs=77.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+|+|||.+|||||||+|+|++....+ ..++.++.+.....+..+. ....+.++||+|.... ...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~Dt~~~~~~---~~~~~~~- 76 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDG------ESATIILLDMWENKGE---NEWLHDH- 76 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETT------EEEEEEEECCCCC-------CTTGGG-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECC------eEEEEEEEEeccCcch---hhhHHHh-
Confidence 689999999999999999999754332 3344333322222222211 1235789999996431 1223222
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+++.+|++++|+|+++..+++....++..+..... ..+.|+++|.||+|+...
T Consensus 77 --~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~ 129 (192)
T 2cjw_A 77 --CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRX 129 (192)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGG
T ss_pred --hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhcc
Confidence 24568999999999987666666666666655421 136899999999999653
No 156
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.39 E-value=6.8e-13 Score=120.60 Aligned_cols=121 Identities=21% Similarity=0.143 Sum_probs=80.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
..+|+|+|.+|||||||+++|++........|..+.+...+.+..+. ....+.++||||..... .+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g------~~~~~~i~Dt~g~~~~~----~~~~~- 73 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG------KTIKAQIWDTAGQERYR----RITSA- 73 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETT------EEEEEEEEECSSGGGTT----CCCHH-
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC------EEEEEEEEECCCchhhh----hhhHH-
Confidence 36899999999999999999998765443334333444445544331 12357899999975431 22222
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..+.++++++|+|+++....+....+..++..... ...|+++|+||+|+.+.
T Consensus 74 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 74 --YYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp --HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGG
T ss_pred --HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc
Confidence 34678999999999876555555555555554321 35789999999999753
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.39 E-value=2.6e-13 Score=143.37 Aligned_cols=120 Identities=21% Similarity=0.224 Sum_probs=84.3
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCc----------------cC------CCCeeeeccceeecCCCCCCcccc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDI----------------AD------YPFTTLMPNLGRLDGDPTLGAEKY 325 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~------~pfTTl~p~~g~v~~~~~~~~~~~ 325 (421)
++....+|+|+|.+|||||||+++|+.....+ .+ ..++|.......+...
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-------- 80 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK-------- 80 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--------
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--------
Confidence 45567899999999999999999996322111 11 1233444443334332
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
...+.||||||+.+. .....+.++.+|++|+|+|+++....+... ++..+.. .+.|+++|+||+|+.
T Consensus 81 ~~~i~liDTPG~~df-------~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~-----~~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 81 DYLINLLDTPGHADF-------TEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL-----RHTPIMTFINKMDRD 147 (528)
T ss_dssp TEEEEEECCCCSTTC-------CHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT-----TTCCEEEEEECTTSC
T ss_pred CEEEEEEECCCchhH-------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEeCCCCc
Confidence 347999999998664 234678889999999999999876655544 4555554 368999999999997
Q ss_pred CCC
Q 014655 406 EMY 408 (421)
Q Consensus 406 ~~~ 408 (421)
...
T Consensus 148 ~~~ 150 (528)
T 3tr5_A 148 TRP 150 (528)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 158
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.38 E-value=5.8e-13 Score=139.12 Aligned_cols=114 Identities=23% Similarity=0.252 Sum_probs=76.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC-------CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP-------DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~-------~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~ 345 (421)
.+|+++|.+|+|||||+++|++.+. .....+++|.+.....+... ...++++||||+.+
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~i~iiDtPGh~~------ 85 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--------NYRITLVDAPGHAD------ 85 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--------TEEEEECCCSSHHH------
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--------CEEEEEEECCChHH------
Confidence 5899999999999999999998761 12334556666555444432 24799999999754
Q ss_pred chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 346 GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 346 gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+.......+..+|++|+|+|+++....+..+.+ ..+.. .+.|+++|+||+|+.+.
T Consensus 86 -~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 86 -LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH-----FNIPIIVVITKSDNAGT 140 (482)
T ss_dssp -HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCBCEEEECTTSSCH
T ss_pred -HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH-HHHHH-----cCCCEEEEEECCCcccc
Confidence 244556778899999999999876544444433 34444 35788999999999864
No 159
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.37 E-value=5e-13 Score=143.49 Aligned_cols=118 Identities=15% Similarity=0.141 Sum_probs=80.5
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccC-------------------------------CCCeeeeccceeecCCC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD-------------------------------YPFTTLMPNLGRLDGDP 318 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~-------------------------------~pfTTl~p~~g~v~~~~ 318 (421)
+...+|+++|.+|+|||||+++|+.....+.. .+++|.+.....+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 44579999999999999999999976544322 1455666555555443
Q ss_pred CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC------ChhhHHHHHHHHHhcCCCCCC
Q 014655 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLE 392 (421)
Q Consensus 319 ~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~ 392 (421)
...++||||||+.+ +.......+..||++|+|||++.+. ...+.......+... .-
T Consensus 244 -------~~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l----gi 305 (611)
T 3izq_1 244 -------RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GI 305 (611)
T ss_dssp -------SCEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT----TC
T ss_pred -------CceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc----CC
Confidence 24799999999854 3455567788999999999998631 111222233333331 12
Q ss_pred CCEEEEEeCCCCCC
Q 014655 393 RPFIVVLNKIDLPE 406 (421)
Q Consensus 393 kP~IIVlNK~Dl~~ 406 (421)
+|+|+|+||+|+.+
T Consensus 306 ~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 306 HNLIIAMNKMDNVD 319 (611)
T ss_dssp CEEEEEEECTTTTT
T ss_pred CeEEEEEecccccc
Confidence 45999999999986
No 160
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.37 E-value=7.6e-13 Score=137.99 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=77.7
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-------------------------------cCCCCeeeeccceeecCCC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP 318 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-------------------------------a~~pfTTl~p~~g~v~~~~ 318 (421)
+...+|+++|.+|+|||||+++|+.....+ ...+++|.+.....+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 455799999999999999999997652211 112344444444444332
Q ss_pred CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCCh------hhHHHHHHHHHhcCCCCCC
Q 014655 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLE 392 (421)
Q Consensus 319 ~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~ 392 (421)
...+.||||||+.+ +.......+..||++|+|+|++++... .+.......+... ..
T Consensus 110 -------~~~~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~----~~ 171 (483)
T 3p26_A 110 -------RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL----GI 171 (483)
T ss_dssp -------SCEEEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT----TC
T ss_pred -------CceEEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc----CC
Confidence 24799999999854 345567778999999999999875321 2223333333332 12
Q ss_pred CCEEEEEeCCCCCCC
Q 014655 393 RPFIVVLNKIDLPEM 407 (421)
Q Consensus 393 kP~IIVlNK~Dl~~~ 407 (421)
+|+|+|+||+|+.+.
T Consensus 172 ~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 172 HNLIIAMNKMDNVDW 186 (483)
T ss_dssp CCEEEEEECGGGGTT
T ss_pred CcEEEEEECcCcccc
Confidence 579999999999863
No 161
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.35 E-value=6.3e-13 Score=119.35 Aligned_cols=123 Identities=18% Similarity=0.177 Sum_probs=71.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCC-CCccCCCCee-eeccceeecCCCCCCccccccceEEecCCcccccccccCchhHH
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTT-LMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRN 350 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTT-l~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~ 350 (421)
.+|+|+|.+|||||||+++|++.. +....+..|+ .+.....+..... ......+.+|||||..+... +..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~---~~~~~~~~i~Dt~G~~~~~~----~~~- 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDK---RKRDLVLNVWDFAGREEFYS----THP- 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC------------CEEEEEEECSHHHHHT----TSH-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccC---CCCceEEEEEecCCCHHHHH----hhH-
Confidence 489999999999999999999863 2222222221 1111111111000 00124689999999765321 222
Q ss_pred HHHhcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 351 FLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 351 fL~~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.++..++++++|+|++++. ..+.+..+..++.... .+.|+++|+||+|+.+..
T Consensus 75 --~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~ 128 (184)
T 2zej_A 75 --HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDEK 128 (184)
T ss_dssp --HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCHH
T ss_pred --HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccch
Confidence 2345689999999998752 3444555555554432 368999999999997643
No 162
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.35 E-value=1.4e-13 Score=145.56 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=85.4
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.++|+++|.+|+|||||+++|++.+......+++|.+.....+.... +..++||||||+.+.... .
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-------g~~i~~iDTPGhe~f~~~-------~ 69 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-------GEKITFLDTPGHAAFSAM-------R 69 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-------SSCCBCEECSSSCCTTTS-------B
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-------CCEEEEEECCChHHHHHH-------H
Confidence 46899999999999999999998765556677888776665554321 246899999997553221 1
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+.+..+|++++|+|+++....+..+.+ ..+.. .+.|+++|+||+|+.+.
T Consensus 70 ~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~-----~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 70 ARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD-----AHVPIVLAINKCDKAEA 119 (537)
T ss_dssp BSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT-----TTCCEEECCBSGGGTTT
T ss_pred HHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH-----cCCcEEEEEeccccccc
Confidence 2446779999999999987666555433 34443 46899999999999754
No 163
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.34 E-value=1.8e-12 Score=129.67 Aligned_cols=133 Identities=21% Similarity=0.214 Sum_probs=73.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCC-----c-cCCCC----------------------eeeecc-------------
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPD-----I-ADYPF----------------------TTLMPN------------- 310 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~-----i-a~~pf----------------------TTl~p~------------- 310 (421)
.++|++||.||||||||+|+|++.+.. + ...|. ||.+..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 478999999999999999999987643 1 22333 222100
Q ss_pred --ceeecCCCCCC-ccccccceEEecCCcccccccc--cC----chhHHHHHhcc-cCCEEEEEeeCCCCCChhhHHHHH
Q 014655 311 --LGRLDGDPTLG-AEKYSSEATLADLPGLIEGAHL--GK----GLGRNFLRHLR-RTRLLVHVIDAAAENPVNDYRTVK 380 (421)
Q Consensus 311 --~g~v~~~~~~~-~~~~~~~i~iiDtPGlie~a~~--~~----gl~~~fL~~i~-radvIl~VvD~s~~~~~~~~~~l~ 380 (421)
.+.......+. .......++||||||+.+.+.. .. .+......++. .++++++|+|++......+..
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~--- 187 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL--- 187 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH---
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH---
Confidence 00000000000 0000246999999999764321 11 12222334443 456777778876532222222
Q ss_pred HHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 381 EELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 381 ~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..++.+.+ .+.|+++|+||+|+.+..+
T Consensus 188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~~~ 214 (353)
T 2x2e_A 188 KVAKEVDP--QGQRTIGVITKLDLMDEGT 214 (353)
T ss_dssp HHHHHHCT--TCTTEEEEEECGGGSCTTC
T ss_pred HHHHHhCc--CCCceEEEeccccccCcch
Confidence 23333332 4689999999999986544
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.33 E-value=2.2e-12 Score=131.37 Aligned_cols=115 Identities=23% Similarity=0.231 Sum_probs=77.2
Q ss_pred hceecccCCCCCChhHHHHHHhcC---CCC--c-cC-----------CCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA---KPD--I-AD-----------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~---~~~--i-a~-----------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt 334 (421)
..+|+++|.+|+|||||+++|++. ... . .. ..+.|.+.....+... ...+.++||
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--------~~~~~iiDt 82 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA--------KRHYSHVDC 82 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS--------SCEEEEEEC
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC--------CeEEEEEEC
Confidence 368999999999999999999873 100 0 00 1222333222222211 247999999
Q ss_pred CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCC
Q 014655 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEM 407 (421)
Q Consensus 335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~ 407 (421)
||+.+. .......+..+|++|+|+|+++....+. ..++..+.. .+.| +++|+||+|+...
T Consensus 83 pG~~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~-----~~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 83 PGHADY-------IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-----VGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp CCSGGG-------HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH-----TTCCCEEEEEECGGGCCC
T ss_pred CChHHH-------HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCEEEEEEECccccCc
Confidence 998653 3445667789999999999988665444 344455554 3577 8899999999853
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.33 E-value=3.1e-12 Score=130.09 Aligned_cols=114 Identities=20% Similarity=0.156 Sum_probs=77.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc----------------cCCCCeeeeccceeecCCCCCCccccccceEEecCCc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI----------------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPG 336 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i----------------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPG 336 (421)
.+|+++|.+|+|||||+++|++..... ....+.|.+.....+... ...+.++||||
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------~~~~~iiDtpG 75 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA--------ARHYAHTDCPG 75 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--------SCEEEEEECSS
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--------CeEEEEEECCC
Confidence 589999999999999999998741100 002234444332222221 24799999999
Q ss_pred ccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCC
Q 014655 337 LIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEM 407 (421)
Q Consensus 337 lie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~ 407 (421)
+.+. .......+..+|++|+|+|+++....+..+.+ ..+.. .+.| +++|+||+|+...
T Consensus 76 ~~~f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~vp~iivviNK~Dl~~~ 134 (397)
T 1d2e_A 76 HADY-------VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-----IGVEHVVVYVNKADAVQD 134 (397)
T ss_dssp HHHH-------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCSC
T ss_pred hHHH-------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCeEEEEEECcccCCC
Confidence 8653 23445667889999999999987655544433 44544 3577 6899999999853
No 166
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.32 E-value=2.2e-12 Score=116.98 Aligned_cols=123 Identities=21% Similarity=0.164 Sum_probs=82.7
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhH
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGR 349 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~ 349 (421)
....+|+|+|.+|||||||+++|++........+..+.+...+.+..+. ....+.++||||+.+. ..+..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g------~~~~~~i~Dt~g~~~~----~~~~~ 96 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG------KTIKAQIWDTAGLERY----RAITS 96 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETT------EEEEEEEEEECSCCSS----SCCCH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC------EEEEEEEEECCCCcch----hhhhH
Confidence 3457899999999999999999998775544444444455555554331 1224678999997543 22222
Q ss_pred HHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 350 NFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 350 ~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
..++.++++++|+|+++....+....+..++..... ...|+++|+||+|+.+.
T Consensus 97 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 97 ---AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp ---HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG
T ss_pred ---HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccc
Confidence 335678999999999875544554445555554322 35789999999999753
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.32 E-value=4.7e-12 Score=130.24 Aligned_cols=118 Identities=21% Similarity=0.198 Sum_probs=74.9
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-----------cCCCCeee----------------------eccceeecC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-----------ADYPFTTL----------------------MPNLGRLDG 316 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-----------a~~pfTTl----------------------~p~~g~v~~ 316 (421)
+...+|+++|.+|+|||||+++|+.....+ +.++.||. +.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 345689999999999999999998764322 11233321 111111111
Q ss_pred CCCCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655 317 DPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI 396 (421)
Q Consensus 317 ~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I 396 (421)
. ...+.+|||||+.+. .......+..+|++|+|+|+++....+..+ ++..+.... -+|++
T Consensus 102 ~--------~~~~~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~-~l~~~~~~~----~~~iI 161 (434)
T 1zun_B 102 A--------KRKFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARYGVQTQTRR-HSYIASLLG----IKHIV 161 (434)
T ss_dssp S--------SEEEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTTCSCHHHHH-HHHHHHHTT----CCEEE
T ss_pred C--------CceEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHHHcC----CCeEE
Confidence 1 246999999997543 344556788999999999999865444333 333444321 24689
Q ss_pred EEEeCCCCCCC
Q 014655 397 VVLNKIDLPEM 407 (421)
Q Consensus 397 IVlNK~Dl~~~ 407 (421)
+|+||+|+.+.
T Consensus 162 vviNK~Dl~~~ 172 (434)
T 1zun_B 162 VAINKMDLNGF 172 (434)
T ss_dssp EEEECTTTTTS
T ss_pred EEEEcCcCCcc
Confidence 99999999864
No 168
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.32 E-value=3.6e-12 Score=139.55 Aligned_cols=135 Identities=20% Similarity=0.215 Sum_probs=81.5
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCC--------------------------------
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDP-------------------------------- 318 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~-------------------------------- 318 (421)
.+++|++||.+|||||||+|+|++..........+|..|..-.+...+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 457999999999999999999999764322222334322111110000
Q ss_pred ----CCCc--------cccccceEEecCCccccccc--ccC----chhHHHHHhc-ccCCEEEEEeeCCCCCChhhHHHH
Q 014655 319 ----TLGA--------EKYSSEATLADLPGLIEGAH--LGK----GLGRNFLRHL-RRTRLLVHVIDAAAENPVNDYRTV 379 (421)
Q Consensus 319 ----~~~~--------~~~~~~i~iiDtPGlie~a~--~~~----gl~~~fL~~i-~radvIl~VvD~s~~~~~~~~~~l 379 (421)
.+.. .....+++|+||||+...+. +.. .+.....+++ +.+|++++|+|++......+...+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 0000 00013589999999987431 111 1222222333 578999999999876544554345
Q ss_pred HHHHHhcCCCCCCCCEEEEEeCCCCCCCCCc
Q 014655 380 KEELRMYNPDYLERPFIVVLNKIDLPEMYDD 410 (421)
Q Consensus 380 ~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e~ 410 (421)
..++.. .++|+|+|+||+|+......
T Consensus 210 l~~L~~-----~g~pvIlVlNKiDlv~~~~~ 235 (772)
T 3zvr_A 210 AKEVDP-----QGQRTIGVITKLDLMDEGTD 235 (772)
T ss_dssp HHHHCT-----TCSSEEEEEECTTSSCTTCC
T ss_pred HHHHHh-----cCCCEEEEEeCcccCCcchh
Confidence 555543 46899999999999876543
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.30 E-value=1.3e-12 Score=137.23 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=80.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNF 351 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~f 351 (421)
.+.|+++|.+++|||||+++|.+........+++|.+.....+... +..++||||||+.+.... .
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--------~~~i~~iDTPGhe~f~~~-------~ 68 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--------NGMITFLDTPGHAAFTSM-------R 68 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--------SSCCCEECCCTTTCCTTS-------B
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--------CEEEEEEECCCcHHHHHH-------H
Confidence 4689999999999999999998755433344555655443333322 247899999998654221 1
Q ss_pred HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 352 LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 352 L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.+.+..||++++|+|+++....+..+.+. .+.. .+.|+++|+||+|+...
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~-~~~~-----~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQ-HAKA-----AQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHH-HHHH-----TTCCEEEEEECSSSSTT
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHH-HHHh-----cCceEEEEEEecccccc
Confidence 24467899999999998865545544443 3333 46899999999999753
No 170
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.30 E-value=8.4e-12 Score=131.88 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=78.5
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCCCcc----------------C------CCCeeeeccceeecCCCCCCcccc
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKPDIA----------------D------YPFTTLMPNLGRLDGDPTLGAEKY 325 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia----------------~------~pfTTl~p~~g~v~~~~~~~~~~~ 325 (421)
+.+...+|+++|.+|||||||+++|+.....+. + ..+.|.......+.+.
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-------- 80 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH-------- 80 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET--------
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC--------
Confidence 345668999999999999999999986432220 0 1111211111122211
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
...+.++||||+.+. .....+.+..+|++|+|+|+++..... ...++..+.. .+.|+++|+||+|+.
T Consensus 81 ~~~i~liDTPG~~df-------~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~~-----~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDF-------SEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTRL-----RDTPILTFMNKLDRD 147 (529)
T ss_dssp TEEEEEECCCCSTTC-------CHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHTT-----TTCCEEEEEECTTSC
T ss_pred CeEEEEEECCCChhH-------HHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHHH-----cCCCEEEEEcCcCCc
Confidence 347999999998653 234567789999999999998765433 3344444433 468999999999998
Q ss_pred CCC
Q 014655 406 EMY 408 (421)
Q Consensus 406 ~~~ 408 (421)
...
T Consensus 148 ~~~ 150 (529)
T 2h5e_A 148 IRD 150 (529)
T ss_dssp CSC
T ss_pred ccc
Confidence 654
No 171
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.30 E-value=6.6e-12 Score=128.05 Aligned_cols=125 Identities=20% Similarity=0.171 Sum_probs=76.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecC-----------CCCCC--cccc--ccceEEec
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLAD 333 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~-----------~~~~~--~~~~--~~~i~iiD 333 (421)
..+|+++|.+++|||||+++|++..... ...++.|.+........ ....+ ...+ ...+.+||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 3689999999999999999999654321 11233444332111100 00000 0000 14799999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
|||+.+. ...+++.+..+|++|+|+|++++. ..+..+.+ ..++.+. .+|+++|+||+|+.+.+
T Consensus 88 tPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~l~----~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 88 SPGHETL-------MATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MALEILG----IDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp CSSHHHH-------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHHHHTT----CCCEEEEEECTTSSCTT
T ss_pred CCCHHHH-------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHHHHcC----CCeEEEEEEccCCCCHH
Confidence 9997542 344566677889999999999765 33333333 3444332 25899999999998754
No 172
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.29 E-value=4.2e-12 Score=138.18 Aligned_cols=117 Identities=21% Similarity=0.173 Sum_probs=79.0
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCC------------ccC------CCCeeeeccceeecCCCCCCccccccceEEe
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPD------------IAD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLA 332 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~------------ia~------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~ii 332 (421)
.+.+|+|+|.+|+|||||+++|+..... +.+ .+.+|+......+... +..+.+|
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--------~~~i~li 80 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--------GHRVNII 80 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--------TEEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--------CeeEEEE
Confidence 4568999999999999999999842111 111 1334444443333322 3479999
Q ss_pred cCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 333 DLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 333 DtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
||||+.+. .....+.++.+|++|+|+|+++.....+.. ++..+.. .+.|+++|+||+|+...+
T Consensus 81 DTPG~~df-------~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~-----~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 81 DTPGHVDF-------TVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT-----YGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp CCCCCSSC-------CHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH-----TTCCEEEEEECTTSTTCC
T ss_pred ECcCCcch-------HHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH-----cCCCEEEEEECCCccccc
Confidence 99998764 234567778899999999999876665554 4444554 368999999999998653
No 173
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.29 E-value=3.4e-12 Score=130.14 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=77.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCc---cCCCCeeeeccceeecC-----------CCCCC--cccc--ccceEEec
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDI---ADYPFTTLMPNLGRLDG-----------DPTLG--AEKY--SSEATLAD 333 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~i---a~~pfTTl~p~~g~v~~-----------~~~~~--~~~~--~~~i~iiD 333 (421)
..+|+++|.+++|||||+++|++..... ...++.|.+........ ....+ ...+ ...+.++|
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 4689999999999999999999654321 11234444332211110 00000 0000 14799999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
|||+.+. ...+++.+..+|++|+|+|+++.. ..+..+.+ ..+..+. .+|+++|+||+|+.+.+
T Consensus 90 tPGh~~f-------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~~----~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 90 APGHEAL-------MTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQIIG----QKNIIIAQNKIELVDKE 153 (410)
T ss_dssp CSSHHHH-------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHHT----CCCEEEEEECGGGSCHH
T ss_pred CCChHHH-------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHcC----CCcEEEEEECccCCCHH
Confidence 9997542 345567778899999999999765 33333333 3444432 26899999999998754
No 174
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.28 E-value=7.9e-12 Score=133.85 Aligned_cols=123 Identities=21% Similarity=0.203 Sum_probs=78.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCccC---------------CCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt 334 (421)
+.+.+|+++|++++|||||+++|+.....+.. ..+.|.......+.+... ......+.+|||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~---dg~~~~inliDT 80 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK---DGNTYKLHLIDT 80 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECT---TSCEEEEEEECC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcC---CCCeEEEEEEEC
Confidence 45679999999999999999999763211110 012222222222211100 001247899999
Q ss_pred CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
||+.+. .....+.+..||++|+|+|+++....+....+...+. .+.|+++|+||+|+..++
T Consensus 81 PGh~dF-------~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 81 PGHVDF-------SYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD 141 (600)
T ss_dssp CCSGGG-------HHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC
T ss_pred CCcHhH-------HHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC
Confidence 998764 2345566789999999999998776666665554443 368999999999998654
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.28 E-value=9.8e-12 Score=135.23 Aligned_cols=118 Identities=17% Similarity=0.146 Sum_probs=79.0
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCC------c------cC------CCCeeeeccceeecCCCCCCccccccceEE
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPD------I------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~------i------a~------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~i 331 (421)
....+|+|+|.+|+|||||+++|+..... + .+ ....|+......+... ...+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--------~~~i~l 81 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--------DHRINI 81 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--------TEEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--------CeEEEE
Confidence 45578999999999999999999842111 1 11 1233333333333221 347999
Q ss_pred ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
|||||+.+. .....+.+..+|++|+|+|+++....+....| ..+.. .+.|+++|+||+|+...+
T Consensus 82 iDTPG~~df-------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~-~~~~~-----~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 82 IDTPGHVDF-------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK-----YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp ECCCSSTTC-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCEEEEEECTTSTTCC
T ss_pred EECcCccch-------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHH-HHHHH-----cCCCEEEEEECCCcccCC
Confidence 999998653 33456778889999999999987766665544 44444 368999999999998654
No 176
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.27 E-value=2.1e-13 Score=137.82 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=86.1
Q ss_pred hceecccCCCCCChhHHHHHHhcC------CCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA------KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~------~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~ 345 (421)
..+|+++|.||+|||||+|+|++. ...++++|+||.+.....+. ..+.++||||+.+......
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~~ 230 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-----------SGATLYDTPGIINHHQMAH 230 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-----------TTCEEEECCSCCCCSSGGG
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-----------CCeEEEeCCCcCcHHHHHH
Confidence 457999999999999999999987 45568899999887665432 3589999999987654445
Q ss_pred chhHHHHHhc---ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 346 GLGRNFLRHL---RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 346 gl~~~fL~~i---~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+...++.++ .+.|.++|++|+........+.. .+.|. ..+.|+++|+||+|.....
T Consensus 231 ~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~-----~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 231 FVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK-----GGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp GSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE-----SSSEEEEEEECTTSCEEEE
T ss_pred HHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEcc-----CCCceEEEEecCCcccccc
Confidence 5666677777 78999999999853211111110 01111 1357899999999987544
No 177
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.27 E-value=4.4e-12 Score=130.52 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=72.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCcc-------------------------------CCCCeeeeccceeecCCCCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------------DYPFTTLMPNLGRLDGDPTL 320 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------------~~pfTTl~p~~g~v~~~~~~ 320 (421)
..+|+++|.+|+|||||+++|+.....+. ...++|.+.....+...
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~--- 82 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK--- 82 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS---
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC---
Confidence 46899999999999999999986411110 02345555444444332
Q ss_pred CccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC------ChhhHHHHHHHHHhcCCCCCCCC
Q 014655 321 GAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN------PVNDYRTVKEELRMYNPDYLERP 394 (421)
Q Consensus 321 ~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~------~~~~~~~l~~eL~~~~~~l~~kP 394 (421)
...+.+|||||+.+. .......+..+|++|+|+|+++.. ...+.+..+..+..+. -.|
T Consensus 83 -----~~~~~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~----~~~ 146 (435)
T 1jny_A 83 -----KYFFTIIDAPGHRDF-------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG----LDQ 146 (435)
T ss_dssp -----SCEEEECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT----CTT
T ss_pred -----CeEEEEEECCCcHHH-------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcC----CCe
Confidence 347999999998653 344567789999999999998731 1123333333334321 246
Q ss_pred EEEEEeCCCCCCC
Q 014655 395 FIVVLNKIDLPEM 407 (421)
Q Consensus 395 ~IIVlNK~Dl~~~ 407 (421)
+++|+||+|+.+.
T Consensus 147 iivviNK~Dl~~~ 159 (435)
T 1jny_A 147 LIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEEECGGGSSS
T ss_pred EEEEEEcccCCCc
Confidence 8999999999873
No 178
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.26 E-value=1e-11 Score=132.98 Aligned_cols=122 Identities=21% Similarity=0.248 Sum_probs=75.4
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCCCccC---------------CCCeeeeccceeecCCCCCCccccccceEEecCC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKPDIAD---------------YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLP 335 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~---------------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtP 335 (421)
.+.+|+++|.+++|||||+++|+.....+.. ..+.|.......+.+... ......+.+||||
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~---~g~~~~l~liDTP 79 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS---DGETYQLNFIDTP 79 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT---TSCEEEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC---CCCeEEEEEEECC
Confidence 4578999999999999999999864322211 112233222222221100 0012478999999
Q ss_pred cccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 336 GLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 336 Glie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
|+.+. .....+.+..||++|+|+|+++....+....|...+. .+.|+++|+||+|+..+.
T Consensus 80 Gh~dF-------~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 80 GHVDF-------SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp CCGGG-------HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCC
T ss_pred CchHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCccccc
Confidence 98664 3345567788999999999998877666666555543 368999999999998754
No 179
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.25 E-value=6.3e-12 Score=127.12 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=72.7
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLR 353 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~ 353 (421)
+|+++|.+|+|||||+++|+ ....|.+.....+... ...+.+|||||+.+. ......
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~--------~~~i~iiDtPGh~~f-------~~~~~~ 79 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKE--------GRNMVFVDAHSYPKT-------LKSLIT 79 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSS--------SSEEEEEECTTTTTC-------HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecC--------CeEEEEEECCChHHH-------HHHHHH
Confidence 89999999999999999998 2244555444444332 246999999998653 334556
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCE-EEEEe-CCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVLN-KIDL 404 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~-IIVlN-K~Dl 404 (421)
.+..+|++++|+| .... ..+.+.++..+.. .+.|. ++|+| |+|+
T Consensus 80 ~~~~aD~ailVvd-~~g~-~~qt~e~~~~~~~-----~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQGL-DAHTGECIIALDL-----LGFKHGIIALTRSDST 125 (370)
T ss_dssp HHHTCSEEEEEEC-TTCC-CHHHHHHHHHHHH-----TTCCEEEEEECCGGGS
T ss_pred HHHHCCEEEEEEc-CCCC-cHHHHHHHHHHHH-----cCCCeEEEEEEeccCC
Confidence 6789999999999 5443 3344445555554 35677 99999 9999
No 180
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.25 E-value=4.1e-12 Score=131.81 Aligned_cols=114 Identities=20% Similarity=0.192 Sum_probs=73.8
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCcc-------------------------C------CCCeeeeccceeecCCCCCC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIA-------------------------D------YPFTTLMPNLGRLDGDPTLG 321 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia-------------------------~------~pfTTl~p~~g~v~~~~~~~ 321 (421)
.+|+++|.+|+|||||+++|+.....+. + ..+.|.+.....+...
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~---- 83 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP---- 83 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS----
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC----
Confidence 5899999999999999999986411110 0 1234444443333322
Q ss_pred ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCCh------hhHHHHHHHHHhcCCCCCCCC-
Q 014655 322 AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPV------NDYRTVKEELRMYNPDYLERP- 394 (421)
Q Consensus 322 ~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~------~~~~~l~~eL~~~~~~l~~kP- 394 (421)
...++||||||+.+ +.......+..+|++|+|||+++.... .+....+..+.. .+.|
T Consensus 84 ----~~~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-----~~v~~ 147 (458)
T 1f60_A 84 ----KYQVTVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-----LGVRQ 147 (458)
T ss_dssp ----SEEEEEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-----TTCCE
T ss_pred ----CceEEEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-----cCCCe
Confidence 24799999999753 344456778899999999999864211 022222233333 3455
Q ss_pred EEEEEeCCCCCC
Q 014655 395 FIVVLNKIDLPE 406 (421)
Q Consensus 395 ~IIVlNK~Dl~~ 406 (421)
+|+|+||+|+.+
T Consensus 148 iivviNK~Dl~~ 159 (458)
T 1f60_A 148 LIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEECGGGGT
T ss_pred EEEEEEcccccc
Confidence 899999999984
No 181
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.24 E-value=1e-11 Score=129.03 Aligned_cols=117 Identities=23% Similarity=0.206 Sum_probs=66.2
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-------------------------cC------CCCeeeeccceeecCCC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------AD------YPFTTLMPNLGRLDGDP 318 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-------------------------a~------~pfTTl~p~~g~v~~~~ 318 (421)
+...+|+++|.+|+|||||+++|+.....+ .+ ..+.|++.....+...
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 455789999999999999999997422111 00 1233444333333322
Q ss_pred CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC------hhhHHHHHHHHHhcCCCCCC
Q 014655 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP------VNDYRTVKEELRMYNPDYLE 392 (421)
Q Consensus 319 ~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~------~~~~~~l~~eL~~~~~~l~~ 392 (421)
...+.||||||+.+. .......+..+|++|+|||+++... ..+....+..+.. .+
T Consensus 120 -------~~~~~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-----~~ 180 (467)
T 1r5b_A 120 -------HRRFSLLDAPGHKGY-------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-----QG 180 (467)
T ss_dssp -------SEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-----TT
T ss_pred -------CeEEEEEECCCcHHH-------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-----cC
Confidence 247999999998653 2234556788999999999987521 0122223333333 35
Q ss_pred CC-EEEEEeCCCCCC
Q 014655 393 RP-FIVVLNKIDLPE 406 (421)
Q Consensus 393 kP-~IIVlNK~Dl~~ 406 (421)
.| +|+|+||+|+..
T Consensus 181 vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 181 INHLVVVINKMDEPS 195 (467)
T ss_dssp CSSEEEEEECTTSTT
T ss_pred CCEEEEEEECccCCC
Confidence 66 999999999965
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.24 E-value=7.8e-12 Score=113.76 Aligned_cols=123 Identities=23% Similarity=0.188 Sum_probs=73.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCCC--CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAKP--DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGK 345 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~~--~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~ 345 (421)
.+.....|+|+|.+|||||||+|+|++... .+.+.+++|.... .+.. ...+.++||||+........
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~---------~~~~~l~Dt~G~~~~~~~~~ 90 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEV---------ADGKRLVDLPGYGYAEVPEE 90 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEE---------ETTEEEEECCCCC------C
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEe---------cCCEEEEECcCCcccccCHH
Confidence 344556899999999999999999998762 2245556655322 2211 12578999999864211000
Q ss_pred ------chhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 346 ------GLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 346 ------gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
.....++++...++.+++|+|++......+ ..+..++.. ...|+++|.||+|+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~-----~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 91 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD-----SNIAVLVLLTKADKLAS 152 (210)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH-----TTCCEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH-HHHHHHHHH-----cCCCeEEEEecccCCCc
Confidence 011223344467899999999987654433 234445544 45889999999998764
No 183
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.23 E-value=6.8e-12 Score=119.76 Aligned_cols=135 Identities=16% Similarity=0.087 Sum_probs=76.5
Q ss_pred hceecccCCC---------CCChhHHHHHHhcCC--CCccCCCCee--eeccceeecCCCC--------CCccccccceE
Q 014655 272 VADVGLVGLP---------NAGKSTLLAAITHAK--PDIADYPFTT--LMPNLGRLDGDPT--------LGAEKYSSEAT 330 (421)
Q Consensus 272 i~~V~LVG~p---------NaGKSSLLnaLt~~~--~~ia~~pfTT--l~p~~g~v~~~~~--------~~~~~~~~~i~ 330 (421)
..+|+|||.+ |||||||+++|++.. ..+.++..|| .+.....+..... ...+.....+.
T Consensus 19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 98 (255)
T 3c5h_A 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMH 98 (255)
T ss_dssp CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEE
T ss_pred eeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEE
Confidence 3689999999 999999999999852 2334455554 2222222211000 00001124678
Q ss_pred Eec------CCccccccc--------------------------ccCchhHHHHHhcc-----cCCEEEEEeeCCCC--C
Q 014655 331 LAD------LPGLIEGAH--------------------------LGKGLGRNFLRHLR-----RTRLLVHVIDAAAE--N 371 (421)
Q Consensus 331 iiD------tPGlie~a~--------------------------~~~gl~~~fL~~i~-----radvIl~VvD~s~~--~ 371 (421)
||| |||...... +..++...|.++.. .||++|+|+|++++ .
T Consensus 99 i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~ 178 (255)
T 3c5h_A 99 IVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNR 178 (255)
T ss_dssp EEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----
T ss_pred EEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchh
Confidence 887 555432211 01112222222222 69999999999987 7
Q ss_pred ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 372 PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 372 ~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
+.+.+..+..++..+.. ..+.|+++|+||+|+...
T Consensus 179 s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~ 213 (255)
T 3c5h_A 179 NFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVE 213 (255)
T ss_dssp CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCH
T ss_pred hHHHHHHHHHHHHHHhc-cCCCCEEEEEEccccccc
Confidence 77777766666654310 135899999999999653
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.22 E-value=6.8e-13 Score=141.96 Aligned_cols=116 Identities=23% Similarity=0.271 Sum_probs=59.7
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-------------------------------cCCCCeeeeccceeecCCC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-------------------------------ADYPFTTLMPNLGRLDGDP 318 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-------------------------------a~~pfTTl~p~~g~v~~~~ 318 (421)
+...+|+++|.+|+|||||+++|+.....+ ...+++|.+.....+...
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 455789999999999999999996431111 013355555554444332
Q ss_pred CCCccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC-------ChhhHHHHHHHHHhcCCCCC
Q 014655 319 TLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-------PVNDYRTVKEELRMYNPDYL 391 (421)
Q Consensus 319 ~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~-------~~~~~~~l~~eL~~~~~~l~ 391 (421)
...++||||||+.+... .....+..||++|+|||++.+. ..+. ......+.. .
T Consensus 254 -------~~~i~iiDTPGh~~f~~-------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt-~e~l~~~~~-----l 313 (592)
T 3mca_A 254 -------KKIYEIGDAPGHRDFIS-------GMIAGASSADFAVLVVDSSQNNFERGFLENGQT-REHAYLLRA-----L 313 (592)
T ss_dssp ------------CCEEESSSEEEE-------ECCC-------CCSEEEEEECCSSTTSCSCSSH-HHHHHHHHH-----S
T ss_pred -------CeEEEEEECCChHHHHH-------HHHHHHhhCCEEEEEEECCCCccccccccchHH-HHHHHHHHH-----c
Confidence 24789999999875421 1234457799999999998642 2222 233334444 3
Q ss_pred CCC-EEEEEeCCCCCC
Q 014655 392 ERP-FIVVLNKIDLPE 406 (421)
Q Consensus 392 ~kP-~IIVlNK~Dl~~ 406 (421)
+.| +|+|+||+|+..
T Consensus 314 gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 314 GISEIVVSVNKLDLMS 329 (592)
T ss_dssp SCCCEEEEEECGGGGT
T ss_pred CCCeEEEEEecccccc
Confidence 455 899999999976
No 185
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.20 E-value=2.9e-11 Score=120.67 Aligned_cols=118 Identities=22% Similarity=0.243 Sum_probs=75.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCCCc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchhHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPDI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLGRNFL 352 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL 352 (421)
+|.++|..+||||||++.+.+..... .....+|.......+. ...++.||||||..+... ..+ ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~---------~~v~LqIWDTAGQErf~~--~~l--~~~ 67 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS---------TLIDLAVMELPGQLNYFE--PSY--DSE 67 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC---------SSSCEEEEECCSCSSSCC--CSH--HHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc---------cEEEEEEEECCCchhccc--hhh--hhh
Confidence 58899999999999999887643211 1112233333333321 124799999999865410 001 112
Q ss_pred HhcccCCEEEEEeeCCCCCChhhHHHHHHHH---HhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 353 RHLRRTRLLVHVIDAAAENPVNDYRTVKEEL---RMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 353 ~~i~radvIl~VvD~s~~~~~~~~~~l~~eL---~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+.+.|+++++|+|+++. ..+....|.+++ .... .+.|+++|+||+|+...+
T Consensus 68 ~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~---~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 68 RLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVN---PSINIEVLIHKVDGLSED 122 (331)
T ss_dssp HHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHC---TTCEEEEECCCCCSSCSH
T ss_pred hhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcC---CCCcEEEEEECcccCchh
Confidence 446789999999999986 444444443333 3333 368999999999998654
No 186
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.18 E-value=1.2e-12 Score=132.39 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=80.1
Q ss_pred hceecccCCCCCChhHHHHHHhcC-------CCCccCCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA-------KPDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~-------~~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~ 344 (421)
..+|+++|.||+|||||+|+|++. ...++++|+||.+.....+. ..+.++||||+.+.....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-----------~~~~liDtPG~~~~~~~~ 228 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD-----------EESSLYDTPGIINHHQMA 228 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS-----------SSCEEEECCCBCCTTSGG
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec-----------CCeEEEeCCCcCcHHHHH
Confidence 358999999999999999999986 23358899999887665432 248999999998765444
Q ss_pred CchhHHHHHh---cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC
Q 014655 345 KGLGRNFLRH---LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD 409 (421)
Q Consensus 345 ~gl~~~fL~~---i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e 409 (421)
..+....+.+ ..+.+.++|++|+........+.. .+.|.. .+.|+++|+||+|.....+
T Consensus 229 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~-----~~~~~~~v~nk~d~~~~~~ 290 (368)
T 3h2y_A 229 HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG-----GRRAFTCHFSNRLTIHRTK 290 (368)
T ss_dssp GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES-----SSEEEEEEECTTSCEEEEE
T ss_pred HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-EEEecC-----CCceEEEEecCcccccccc
Confidence 4455566665 467899999999843211111110 011111 3579999999999876543
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.16 E-value=9.8e-11 Score=127.64 Aligned_cols=125 Identities=18% Similarity=0.084 Sum_probs=78.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCC------c------cC------CCCeeeeccceeecCCCCCCccccccceEE
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPD------I------AD------YPFTTLMPNLGRLDGDPTLGAEKYSSEATL 331 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~------i------a~------~pfTTl~p~~g~v~~~~~~~~~~~~~~i~i 331 (421)
..+.+|+|+|.+|+|||||+++|+..... + .+ ....|.......+...... ...-...+.|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~-~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA-KQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc-ccCCceeEEE
Confidence 34578999999999999999999653211 1 11 1122333222222221100 0011257999
Q ss_pred ecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 332 ADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 332 iDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
|||||+.+. .....+.+..||++|+|+|+++....+... ++..+.. .+.|+++|+||+|+...+
T Consensus 87 iDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~-~~~~~~~-----~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 87 IDTPGHVDF-------TIEVERSMRVLDGAVMVYCAVGGVQPQSET-VWRQANK-----YKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EeCCCccch-------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHH-HHHHHHH-----cCCCEEEEEeCCCccccc
Confidence 999998763 223456678899999999999875544433 4444443 368999999999997653
No 188
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.13 E-value=5.4e-11 Score=127.34 Aligned_cols=121 Identities=22% Similarity=0.186 Sum_probs=73.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecC-------CCCCCc---cccccceEEecCCccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDG-------DPTLGA---EKYSSEATLADLPGLIEGAH 342 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~-------~~~~~~---~~~~~~i~iiDtPGlie~a~ 342 (421)
+.|+++|++|+|||||+++|++...........|.+.....+.. ...... ......++||||||+.+...
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~ 85 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT 85 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHH
Confidence 68999999999999999999875321100001111110000000 000000 00012589999999866532
Q ss_pred ccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 343 LGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 343 ~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
+. .+.+..||++|+|+|+++....+.++.+ ..+.. .+.|+++|+||+|+..
T Consensus 86 ~~-------~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~~l~~-----~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 86 LR-------KRGGALADLAILIVDINEGFKPQTQEAL-NILRM-----YRTPFVVAANKIDRIH 136 (594)
T ss_dssp SB-------CSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHH-----TTCCEEEEEECGGGST
T ss_pred HH-------HHHHhhCCEEEEEEECCCCccHhHHHHH-HHHHH-----cCCeEEEEeccccccc
Confidence 21 1346779999999999987655555544 34544 4689999999999975
No 189
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.13 E-value=1.2e-10 Score=131.71 Aligned_cols=117 Identities=23% Similarity=0.183 Sum_probs=75.3
Q ss_pred hhceecccCCCCCChhHHHHHHhcCCC-----C-----c------cCCCCeeeeccceeecCCCCCCccccccceEEecC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAKP-----D-----I------ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADL 334 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~~-----~-----i------a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDt 334 (421)
...+|+++|.+|+|||||+++|++... . . ....+.|.+.....+... ...++||||
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~--------~~kI~IIDT 366 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP--------TRHYAHVDC 366 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS--------SCEEEEEEC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC--------CEEEEEEEC
Confidence 346899999999999999999987410 0 0 011223333222222211 247999999
Q ss_pred CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCCC
Q 014655 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKIDLPEMY 408 (421)
Q Consensus 335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~Dl~~~~ 408 (421)
||+.+. .......+..+|++|+|||+++....+..+ ++..+.. .+.| +|+|+||+|+...+
T Consensus 367 PGHedF-------~~~mi~gas~AD~aILVVDAtdGv~~QTrE-hL~ll~~-----lgIP~IIVVINKiDLv~d~ 428 (1289)
T 3avx_A 367 PGHADY-------VKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLGRQ-----VGVPYIIVFLNKCDMVDDE 428 (1289)
T ss_dssp CCHHHH-------HHHHHHTSCCCSEEEEEEETTTCSCTTHHH-HHHHHHH-----HTCSCEEEEEECCTTCCCH
T ss_pred CChHHH-------HHHHHHHHhhCCEEEEEEcCCccCcHHHHH-HHHHHHH-----cCCCeEEEEEeecccccch
Confidence 998653 334456678899999999999865444433 3344444 2577 78999999998643
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.13 E-value=2.3e-10 Score=121.41 Aligned_cols=123 Identities=22% Similarity=0.250 Sum_probs=84.4
Q ss_pred hhHHhhhhceecccCCCCCChhHHHHHHhcCCCC----------------ccCC------CCeeeeccceeecCCCCCCc
Q 014655 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAKPD----------------IADY------PFTTLMPNLGRLDGDPTLGA 322 (421)
Q Consensus 265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~~~----------------ia~~------pfTTl~p~~g~v~~~~~~~~ 322 (421)
++-+...+.+|+|||+..+|||||.-+|.-..-. +.++ -+.|+......+.+
T Consensus 24 ~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~------ 97 (548)
T 3vqt_A 24 LEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY------ 97 (548)
T ss_dssp HHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE------
T ss_pred hhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE------
Confidence 4456778889999999999999999998522111 1111 12222222222322
Q ss_pred cccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655 323 EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (421)
Q Consensus 323 ~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~ 402 (421)
-+..|.|+||||+.+.. ....+.++-+|..|+|||+......+. +.+++.+..+ +.|.++++||+
T Consensus 98 --~~~~iNlIDTPGHvDF~-------~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~-----~lp~i~fINK~ 162 (548)
T 3vqt_A 98 --RDRVVNLLDTPGHQDFS-------EDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMR-----ATPVMTFVNKM 162 (548)
T ss_dssp --TTEEEEEECCCCGGGCS-------HHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHT-----TCCEEEEEECT
T ss_pred --CCEEEEEEeCCCcHHHH-------HHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHh-----CCceEEEEecc
Confidence 23579999999998863 235577888999999999998765555 4455666663 68999999999
Q ss_pred CCCCCC
Q 014655 403 DLPEMY 408 (421)
Q Consensus 403 Dl~~~~ 408 (421)
|...++
T Consensus 163 Dr~~ad 168 (548)
T 3vqt_A 163 DREALH 168 (548)
T ss_dssp TSCCCC
T ss_pred cchhcc
Confidence 997764
No 191
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=6.4e-11 Score=119.22 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=61.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCCC-------CeeeeccceeecCCCCCCccccccceEEecCCcccccccc--
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADYP-------FTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHL-- 343 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~p-------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~-- 343 (421)
.+|+|||.+|+|||||+|+|.+.......+. ..|.......+... .......+++|||||+.+....
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~----~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIE----ERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC--------CEEEEEEEEC------------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEee----cCCcccceEEEEeccccccCccHH
Confidence 5799999999999999999987654332221 12221111111111 0011236899999999543210
Q ss_pred -cCchhH-------HHHHhcc----------cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 344 -GKGLGR-------NFLRHLR----------RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 344 -~~gl~~-------~fL~~i~----------radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
-..+.. .+++... ++|+++|+||.+.. ....... ..+.... ...|+|+|+||+|+.
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~-~l~~~d~--~~~~~l~---~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIH---NKVNIVPVIAKADTL 187 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHTC---S-SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCC-CcchhHH--HHHHHhc---cCCCEEEEEECCCCC
Confidence 122332 3333322 23578888886332 2222221 1222222 468999999999998
Q ss_pred CCCC
Q 014655 406 EMYD 409 (421)
Q Consensus 406 ~~~e 409 (421)
...+
T Consensus 188 ~~~e 191 (361)
T 2qag_A 188 TLKE 191 (361)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6543
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.11 E-value=2e-11 Score=122.37 Aligned_cols=115 Identities=23% Similarity=0.290 Sum_probs=61.9
Q ss_pred hceecccCCCCCChhHHHHHHhcC------CCCc-cCCC-------------------------CeeeeccceeecCCCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA------KPDI-ADYP-------------------------FTTLMPNLGRLDGDPT 319 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~------~~~i-a~~p-------------------------fTTl~p~~g~v~~~~~ 319 (421)
...|+|+|+||||||||+|+|++. +..+ +.-| +.|..|..+.+.+...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 568999999999999999999862 2222 1111 1111111111100000
Q ss_pred CC------ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCC
Q 014655 320 LG------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER 393 (421)
Q Consensus 320 ~~------~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k 393 (421)
.. ....+..+.++||||+... .....+.+|++++|+|++.++..+ .+.. ...+.
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~----------~~~l~~~~d~vl~V~d~~~~~~~~---~i~~-------~il~~ 213 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQS----------EFAVADMVDMFVLLLPPAGGDELQ---GIKR-------GIIEM 213 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--C----------HHHHHTTCSEEEEEECCC----------------------CCS
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchh----------hhhHHhhCCEEEEEEcCCcchhHH---HhHH-------HHHhc
Confidence 00 0001347899999997532 123357899999999998643211 1111 11356
Q ss_pred CEEEEEeCCCCCC
Q 014655 394 PFIVVLNKIDLPE 406 (421)
Q Consensus 394 P~IIVlNK~Dl~~ 406 (421)
|.++|+||+|+.+
T Consensus 214 ~~ivVlNK~Dl~~ 226 (349)
T 2www_A 214 ADLVAVTKSDGDL 226 (349)
T ss_dssp CSEEEECCCSGGG
T ss_pred CCEEEEeeecCCC
Confidence 8899999999864
No 193
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.08 E-value=6.5e-11 Score=131.40 Aligned_cols=124 Identities=22% Similarity=0.174 Sum_probs=78.9
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCCCCc-cC---------------CCCeeeeccceeecCCCC--------CCcccc
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAKPDI-AD---------------YPFTTLMPNLGRLDGDPT--------LGAEKY 325 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~~~i-a~---------------~pfTTl~p~~g~v~~~~~--------~~~~~~ 325 (421)
..+.+|+|+|.+|+|||||+++|+.....+ .. ....|+......+.+... .....-
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 345799999999999999999998642221 11 111222222211111100 000001
Q ss_pred ccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 326 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 326 ~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
...+.||||||+.+.. ....+.++.+|++|+|+|+++....++...|...+ . .+.|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~-----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G-----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H-----TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H-----cCCCeEEEEECCCcc
Confidence 3479999999987642 23556778999999999999887766655444433 3 358999999999986
Q ss_pred C
Q 014655 406 E 406 (421)
Q Consensus 406 ~ 406 (421)
.
T Consensus 164 ~ 164 (842)
T 1n0u_A 164 L 164 (842)
T ss_dssp H
T ss_pred h
Confidence 3
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.01 E-value=7.3e-10 Score=120.01 Aligned_cols=116 Identities=24% Similarity=0.213 Sum_probs=76.9
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCCCCc------------cCC------CCeeeeccceeecCCCCCCccccccceE
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAKPDI------------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEAT 330 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~~~i------------a~~------pfTTl~p~~g~v~~~~~~~~~~~~~~i~ 330 (421)
+....+|+|+|.+++|||||+++|+.....+ .++ ...|.......+... ...+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--------~~~~n 77 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--------GHRVF 77 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--------TEEEE
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--------CEEEE
Confidence 3445689999999999999999998533211 000 011222211112111 24689
Q ss_pred EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
++||||+.+. .....+.+..+|++++|+|+++...... ..++..+.. .+.|+++|+||+|+.
T Consensus 78 liDTpG~~~f-------~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~-----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 78 LLDAPGYGDF-------VGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER-----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEECCCSGGG-------HHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred EEeCCCccch-------HHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH-----ccCCEEEEecCCchh
Confidence 9999998653 2345677788999999999887654433 345555554 368999999999997
No 195
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.99 E-value=5.2e-10 Score=120.63 Aligned_cols=116 Identities=21% Similarity=0.270 Sum_probs=78.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCCC------Ccc------CCC------CeeeeccceeecCCCCCCccccccceEEec
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKP------DIA------DYP------FTTLMPNLGRLDGDPTLGAEKYSSEATLAD 333 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~------~ia------~~p------fTTl~p~~g~v~~~~~~~~~~~~~~i~iiD 333 (421)
+.+|+|+|+..+|||||..+|.-..- .+. ++. +.|+......+. +-+..|+|+|
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~--------~~~~~iNlID 73 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ--------WENTKVNIID 73 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB--------CSSCBCCCEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE--------ECCEEEEEEE
Confidence 46899999999999999999853211 111 100 111111111222 2245799999
Q ss_pred CCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 334 LPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 334 tPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
|||+.+. .....+.++-||..|+|||+......+. +.++..+..+ +.|.++++||+|....+
T Consensus 74 TPGH~DF-------~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~-----~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 74 TPGHMDF-------LAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM-----GIPTIFFINKIDQNGID 135 (638)
T ss_dssp CCCSSST-------HHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH-----TCSCEECCEECCSSSCC
T ss_pred CCCcHHH-------HHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc-----CCCeEEEEeccccccCC
Confidence 9999876 3345677888999999999998765555 4555556554 57889999999987654
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.98 E-value=2.3e-10 Score=114.66 Aligned_cols=61 Identities=20% Similarity=0.131 Sum_probs=42.4
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++|+||||+.+. ....++.+|++++|+|++..+..+.+ .....+.|.++|+||+|+..
T Consensus 172 ~~~iiiDTpGi~~~----------~~~~~~~aD~vl~V~d~~~~~~~~~l----------~~~~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 172 FDVILIETVGVGQS----------EVAVANMVDTFVLLTLARTGDQLQGI----------KKGVLELADIVVVNKADGEH 231 (355)
T ss_dssp CCEEEEEECSCSSH----------HHHHHTTCSEEEEEEESSTTCTTTTC----------CTTSGGGCSEEEEECCCGGG
T ss_pred CCEEEEeCCCCCcH----------HHHHHHhCCEEEEEECCCCCccHHHH----------HHhHhhcCCEEEEECCCCcC
Confidence 57999999997542 22335889999999998764432211 11224579999999999874
Q ss_pred C
Q 014655 407 M 407 (421)
Q Consensus 407 ~ 407 (421)
.
T Consensus 232 ~ 232 (355)
T 3p32_A 232 H 232 (355)
T ss_dssp H
T ss_pred h
Confidence 3
No 197
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.91 E-value=4.9e-10 Score=111.71 Aligned_cols=119 Identities=24% Similarity=0.289 Sum_probs=64.9
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcC------CCCc-cCCCCeeeec--cc--------------eeecCCC---CCCc
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHA------KPDI-ADYPFTTLMP--NL--------------GRLDGDP---TLGA 322 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~------~~~i-a~~pfTTl~p--~~--------------g~v~~~~---~~~~ 322 (421)
......|+++|+||||||||+++|+.. +..+ ...+++|... .. +.+...+ ....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 345568999999999999999999642 2222 2333333210 00 0000000 0000
Q ss_pred ------------cccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCC
Q 014655 323 ------------EKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDY 390 (421)
Q Consensus 323 ------------~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l 390 (421)
...+.++.|+||||+.+.. ...+..+|++++|+|++..+..+. +....
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~----------~~~~~~aD~vl~Vvd~~~~~~~~~---l~~~~------- 192 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSE----------TEVARMVDCFISLQIAGGGDDLQG---IKKGL------- 192 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHH----------HHHHTTCSEEEEEECC------CC---CCHHH-------
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchH----------HHHHHhCCEEEEEEeCCccHHHHH---HHHhh-------
Confidence 0113579999999986531 112478999999999975432111 11111
Q ss_pred CCCCEEEEEeCCCCCCC
Q 014655 391 LERPFIVVLNKIDLPEM 407 (421)
Q Consensus 391 ~~kP~IIVlNK~Dl~~~ 407 (421)
.+.|.++|+||+|+...
T Consensus 193 ~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 193 MEVADLIVINKDDGDNH 209 (341)
T ss_dssp HHHCSEEEECCCCTTCH
T ss_pred hcccCEEEEECCCCCCh
Confidence 13678999999999764
No 198
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.90 E-value=6.3e-09 Score=113.41 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=78.9
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCC------CCc------cCC------CCeeeeccceeecCCCCCCccccccceE
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAK------PDI------ADY------PFTTLMPNLGRLDGDPTLGAEKYSSEAT 330 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~------~~i------a~~------pfTTl~p~~g~v~~~~~~~~~~~~~~i~ 330 (421)
+..+.+|+|||+..+|||||..+|.-.. ..+ .++ -+.|+......+.+... ....-+..|.
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~-~~~~~~~~iN 88 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGS-RGQYDNYRVN 88 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCT-TSCSCCEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccC-cCCCCCEEEE
Confidence 4567799999999999999999985221 111 110 01122111112211100 0000134799
Q ss_pred EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
++||||+.+.. ....+.++-||..|+|||+......+....|+..++. +.|.++|+||+|....+
T Consensus 89 lIDTPGHvDF~-------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~------~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 89 VIDTPGHVDFT-------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY------GVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp EECCCSCTTCH-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH------TCCEEEEEECSSSTTCC
T ss_pred EEeCCCCcccH-------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEccccccCcc
Confidence 99999998863 3455778889999999999988766665545444442 58999999999987654
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.80 E-value=4.6e-09 Score=99.05 Aligned_cols=78 Identities=28% Similarity=0.320 Sum_probs=48.5
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHH-HHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKE-ELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~-eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
..++|+||||..+.... ..+...+.+++.. +++++|+|++......++..... .+.... ..+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL--RLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH--HHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc--ccCCCeEEEEeccccc
Confidence 37999999999765322 1234445566777 99999999875433333322211 111100 0358999999999987
Q ss_pred CCC
Q 014655 406 EMY 408 (421)
Q Consensus 406 ~~~ 408 (421)
...
T Consensus 185 ~~~ 187 (262)
T 1yrb_A 185 SEE 187 (262)
T ss_dssp CHH
T ss_pred ccc
Confidence 643
No 200
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.78 E-value=2.9e-09 Score=106.15 Aligned_cols=120 Identities=22% Similarity=0.260 Sum_probs=65.2
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhc------CCCCc-cCCCCeeee--------ccceeecCCCCC-----C-----
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITH------AKPDI-ADYPFTTLM--------PNLGRLDGDPTL-----G----- 321 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~------~~~~i-a~~pfTTl~--------p~~g~v~~~~~~-----~----- 321 (421)
+.+.....|+|+|+||||||||+|+|++ .+..+ +..+.++.. ..++.+...+.. +
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l 129 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTL 129 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccc
Confidence 3445566799999999999999999984 33322 111211110 000000000000 0
Q ss_pred -------------ccccccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC
Q 014655 322 -------------AEKYSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP 388 (421)
Q Consensus 322 -------------~~~~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~ 388 (421)
....+.+++|+||||+.+.. ....+.+|++++|+|++..+. .+.+...+
T Consensus 130 ~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~~~---~~~i~~~i----- 191 (337)
T 2qm8_A 130 GGVAAKTRETMLLCEAAGFDVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAGDE---LQGIKKGI----- 191 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC---------CCTTH-----
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCccc---HHHHHHHH-----
Confidence 00013579999999987531 123478999999999864321 11111111
Q ss_pred CCCCCCEEEEEeCCCCCC
Q 014655 389 DYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 389 ~l~~kP~IIVlNK~Dl~~ 406 (421)
.+.+.++|+||+|+..
T Consensus 192 --~~~~~ivvlNK~Dl~~ 207 (337)
T 2qm8_A 192 --FELADMIAVNKADDGD 207 (337)
T ss_dssp --HHHCSEEEEECCSTTC
T ss_pred --hccccEEEEEchhccC
Confidence 1245688889999764
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=3.2e-08 Score=101.62 Aligned_cols=124 Identities=18% Similarity=0.147 Sum_probs=61.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccCC-------CCeeeeccceeecCCCCCCccccccceEEecCCccccccccc-
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIADY-------PFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG- 344 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~-------pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~- 344 (421)
.+|+|||.+|||||||+|+|++.......+ +.|+.....+.+... ......++++||||+.......
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~-----~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-----GGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-----------CEEEEEEECC----------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec-----CCcccceeeeechhhhhhccchh
Confidence 467999999999999999999876422111 111111111111110 0112368999999986532100
Q ss_pred --Cch----hHHHHHh-----------c--ccCCEEEEEeeCC-CCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 345 --KGL----GRNFLRH-----------L--RRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 345 --~gl----~~~fL~~-----------i--~radvIl~VvD~s-~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..+ ...+-.. + .+++++||+++++ ......+. .+...|. ...|+|+|+||+|+
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~------~~v~iIlVinK~Dl 179 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLH------EKVNIIPLIAKADT 179 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHT------TTSEEEEEEESTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHh------ccCcEEEEEEcccC
Confidence 001 0011111 1 2355677777765 33322232 2344443 25889999999999
Q ss_pred CCCC
Q 014655 405 PEMY 408 (421)
Q Consensus 405 ~~~~ 408 (421)
....
T Consensus 180 l~~~ 183 (418)
T 2qag_C 180 LTPE 183 (418)
T ss_dssp SCHH
T ss_pred ccHH
Confidence 7643
No 202
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.63 E-value=3.4e-08 Score=90.56 Aligned_cols=118 Identities=12% Similarity=0.087 Sum_probs=65.6
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCC-----CC-ccCCCCeeeeccc--------eeecCCCCCCc----------cc
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAK-----PD-IADYPFTTLMPNL--------GRLDGDPTLGA----------EK 324 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~-----~~-ia~~pfTTl~p~~--------g~v~~~~~~~~----------~~ 324 (421)
.+..+.|+++|++|||||||+++|+... .. +...+++|.+... ..+........ ..
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 3456789999999999999999998652 11 1222333221110 00111000000 11
Q ss_pred cccceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 325 YSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 325 ~~~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
....+.++||+|...... ... ..++.+++|+|++.... . ++..+.. ...|.++|+||+|+
T Consensus 107 ~~~d~iiidt~G~~~~~~--------~~~--~~~~~~i~vvd~~~~~~--~---~~~~~~~-----~~~~~iiv~NK~Dl 166 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV--------DFD--LGENYRVVMVSVTEGDD--V---VEKHPEI-----FRVADLIVINKVAL 166 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG--------GCC--CSCSEEEEEEEGGGCTT--H---HHHCHHH-----HHTCSEEEEECGGG
T ss_pred CCCCEEEEeCCCCCCCCc--------hhc--cccCcEEEEEeCCCcch--h---hhhhhhh-----hhcCCEEEEecccC
Confidence 234789999999632210 000 14578999999976532 1 1111222 24788999999998
Q ss_pred CC
Q 014655 405 PE 406 (421)
Q Consensus 405 ~~ 406 (421)
.+
T Consensus 167 ~~ 168 (221)
T 2wsm_A 167 AE 168 (221)
T ss_dssp HH
T ss_pred Cc
Confidence 64
No 203
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.61 E-value=4.6e-08 Score=94.63 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=70.3
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCc-c-------CCCCeeeeccceeecCCCCCCccccccceEEecCCccccccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDI-A-------DYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLG 344 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~i-a-------~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~ 344 (421)
+.|+|||.+|||||||+|.|++..... . +.+.++....++.+.... .+...++++|+||+.......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~-----~~~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG-----GVKMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC---------CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC-----CCcCCceEEechhhhhhcccH
Confidence 479999999999999999999854221 1 122222222233332211 122468999999986432211
Q ss_pred C---ch----hHHHHHh--------------cccCCEEEEEeeCC-CCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 014655 345 K---GL----GRNFLRH--------------LRRTRLLVHVIDAA-AENPVNDYRTVKEELRMYNPDYLERPFIVVLNKI 402 (421)
Q Consensus 345 ~---gl----~~~fL~~--------------i~radvIl~VvD~s-~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~ 402 (421)
. .+ ...+... +.++++.++++|.. .+....+.+ +...|.. ..++|+|+||+
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~-~l~~L~~------~~~vI~Vi~K~ 150 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE-FMKHLSK------VVNIIPVIAKA 150 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH-HHHHHHT------TSEEEEEETTG
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH-HHHHHHh------cCcEEEEEecc
Confidence 0 11 1112111 24578899999965 344444433 4445543 27899999999
Q ss_pred CCCCCCC
Q 014655 403 DLPEMYD 409 (421)
Q Consensus 403 Dl~~~~e 409 (421)
|.....+
T Consensus 151 D~lt~~e 157 (270)
T 3sop_A 151 DTMTLEE 157 (270)
T ss_dssp GGSCHHH
T ss_pred ccCCHHH
Confidence 9887654
No 204
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.60 E-value=2.4e-08 Score=97.14 Aligned_cols=59 Identities=27% Similarity=0.425 Sum_probs=38.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCC-CCccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK-PDIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 341 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~-~~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a 341 (421)
..+|+++|.||+|||||+|+|++.+ ..+++.|+||.+.....+ +..+.++||||+....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-----------GKELELLDTPGILWPK 179 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-----------TTTEEEEECCCCCCSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-----------CCCEEEEECcCcCCCC
Confidence 4589999999999999999999987 456889999987754322 2468999999998653
No 205
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.56 E-value=6.4e-08 Score=103.41 Aligned_cols=100 Identities=21% Similarity=0.142 Sum_probs=60.8
Q ss_pred hceecccCCCCCChhHHHHHHhcCCCCccCCCCeeeeccceeecCC-CCCCccccccceEEecCCccccccc-ccCchhH
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAKPDIADYPFTTLMPNLGRLDGD-PTLGAEKYSSEATLADLPGLIEGAH-LGKGLGR 349 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~~~ia~~pfTTl~p~~g~v~~~-~~~~~~~~~~~i~iiDtPGlie~a~-~~~gl~~ 349 (421)
...|+|||.||+|||||+|+|++....+ ++++||...+.+.+... +. + ......+.++||||+.+... ....-..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~-~-~~~~~~i~LiDTpGi~~~~~~~~~~~~~ 114 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPH-P-KKPGHILVLLDTEGLGDVEKGDNQNDSW 114 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEEC-S-SSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeeccc-c-cCCCceEEEecCCCcCcccccchhHHHH
Confidence 4679999999999999999999987555 67777766665554210 00 0 00134799999999986533 1111112
Q ss_pred HH-HHhcccCCEEEEEeeCCCCCChhhHH
Q 014655 350 NF-LRHLRRTRLLVHVIDAAAENPVNDYR 377 (421)
Q Consensus 350 ~f-L~~i~radvIl~VvD~s~~~~~~~~~ 377 (421)
.| +..+- ++ ++|+|+.......++.
T Consensus 115 ~fala~ll-ss--~lv~n~~~~i~~~dl~ 140 (592)
T 1f5n_A 115 IFALAVLL-SS--TFVYNSIGTINQQAMD 140 (592)
T ss_dssp HHHHHHHH-CS--EEEEEEESCSSHHHHH
T ss_pred HHHHHHHh-cC--eEEEECCCCccHHHHH
Confidence 22 23333 33 4566766555454444
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.52 E-value=9.5e-08 Score=98.36 Aligned_cols=131 Identities=16% Similarity=0.089 Sum_probs=69.7
Q ss_pred HHhhhhce--ecccCCCCCChhHHHHHHhcCCCC---ccC-CCCeeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655 267 LILRVVAD--VGLVGLPNAGKSTLLAAITHAKPD---IAD-YPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (421)
Q Consensus 267 leLk~i~~--V~LVG~pNaGKSSLLnaLt~~~~~---ia~-~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~ 340 (421)
+.++.... |+|||.+|||||||+|.|++.... +.. .+.++.. .++.+.... .+...++++|+||+...
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~-----~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQES-----NVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC-------CEEEEEEEEEECCCC-
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecC-----ccccccchhhhhhhhhc
Confidence 34444444 999999999999999999987521 111 2233333 223322111 11236899999998643
Q ss_pred cccc---C----chhHHH---HHhc----------ccC--C-EEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEE
Q 014655 341 AHLG---K----GLGRNF---LRHL----------RRT--R-LLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIV 397 (421)
Q Consensus 341 a~~~---~----gl~~~f---L~~i----------~ra--d-vIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~II 397 (421)
.... . .+...| +... ..+ | +++||+|+..+....+.+ +...|. ...|+|+
T Consensus 109 ~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Die-ilk~L~------~~~~vI~ 181 (427)
T 2qag_B 109 INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLV-TMKKLD------SKVNIIP 181 (427)
T ss_dssp CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHH-HHHHTC------SCSEEEE
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHH-HHHHHh------hCCCEEE
Confidence 1100 0 011122 2221 122 2 466777877655555533 223332 3689999
Q ss_pred EEeCCCCCCCCCc
Q 014655 398 VLNKIDLPEMYDD 410 (421)
Q Consensus 398 VlNK~Dl~~~~e~ 410 (421)
|+||+|.....+.
T Consensus 182 Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 182 IIAKADAISKSEL 194 (427)
T ss_dssp EESCGGGSCHHHH
T ss_pred EEcchhccchHHH
Confidence 9999998876543
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.49 E-value=1e-07 Score=93.41 Aligned_cols=124 Identities=16% Similarity=0.095 Sum_probs=59.6
Q ss_pred ceecccCCCCCChhHHHHHHhcCCCCccC-CCC------eee-eccceeecCCCCCCccccccceEEecCCccccccc--
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKPDIAD-YPF------TTL-MPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAH-- 342 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~~ia~-~pf------TTl-~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~-- 342 (421)
.+|+|||.+|||||||+++|.+....... .++ .|. ....+.+... ......++++||||+.....
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~-----~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEE-----RGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC--------CCEEEEEEEEC---------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecC-----CCcccCcchhhhhhhhhhcCcH
Confidence 57899999999999999999875322211 110 111 1111111110 01124689999999842210
Q ss_pred -ccCchhH-------HHHHhc----------ccCCEEEEEeeCCCC-CChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 343 -LGKGLGR-------NFLRHL----------RRTRLLVHVIDAAAE-NPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 343 -~~~gl~~-------~fL~~i----------~radvIl~VvD~s~~-~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
.-..+.. .+++.+ .++++++|+++++.. -...+. +.+..+. ...++++|+||+|
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~---~~~~iilV~~K~D 166 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIH---NKVNIVPVIAKAD 166 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHT---TTSCEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHH---hcCCEEEEEEeCC
Confidence 0112222 222222 234567777776432 212222 3333332 2468999999999
Q ss_pred CCCCC
Q 014655 404 LPEMY 408 (421)
Q Consensus 404 l~~~~ 408 (421)
+....
T Consensus 167 l~~~~ 171 (301)
T 2qnr_A 167 TLTLK 171 (301)
T ss_dssp GSCHH
T ss_pred CCCHH
Confidence 97643
No 208
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.39 E-value=6.7e-07 Score=93.88 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=66.7
Q ss_pred hceecccCCCCCChhHHHHHHh------cCCCCc-cCCCCee-e---------eccceeecCCCCCC-----------cc
Q 014655 272 VADVGLVGLPNAGKSTLLAAIT------HAKPDI-ADYPFTT-L---------MPNLGRLDGDPTLG-----------AE 323 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt------~~~~~i-a~~pfTT-l---------~p~~g~v~~~~~~~-----------~~ 323 (421)
...|+|+|.+||||||++++|. +.++.+ +.-++.. . ...+-.+....... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999998 554433 1101100 0 00000000000000 00
Q ss_pred ccccceEEecCCcccccccccCchhHH---HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCE-EEEE
Q 014655 324 KYSSEATLADLPGLIEGAHLGKGLGRN---FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPF-IVVL 399 (421)
Q Consensus 324 ~~~~~i~iiDtPGlie~a~~~~gl~~~---fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~-IIVl 399 (421)
+....++|+||||..... ..+... +.+ +-.+|.+++|+|+.... +.+.. ...+.. ..|+ ++|+
T Consensus 181 ~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~-~i~pd~vllVvDa~~g~--~~~~~-a~~~~~------~~~i~gvVl 247 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQE---DSLFEEMLQVAN-AIQPDNIVYVMDASIGQ--ACEAQ-AKAFKD------KVDVASVIV 247 (504)
T ss_dssp HTTCCEEEEEECCCCTTC---HHHHHHHHHHHH-HHCCSEEEEEEETTCCT--THHHH-HHHHHH------HHCCCCEEE
T ss_pred HCCCcEEEEeCCCCcccc---hhHHHHHHHHHh-hhcCceEEEEEeccccc--cHHHH-HHHHHh------hcCceEEEE
Confidence 013479999999987431 112111 122 23789999999998643 22222 222222 1464 8999
Q ss_pred eCCCCCCCC
Q 014655 400 NKIDLPEMY 408 (421)
Q Consensus 400 NK~Dl~~~~ 408 (421)
||+|.....
T Consensus 248 NK~D~~~~~ 256 (504)
T 2j37_W 248 TKLDGHAKG 256 (504)
T ss_dssp ECTTSCCCC
T ss_pred eCCccccch
Confidence 999987543
No 209
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.32 E-value=2.7e-07 Score=88.84 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=39.2
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC-CccCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP-DIADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGA 341 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~-~ia~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a 341 (421)
.+|+++|.||+|||||+|+|++... .+++.+++|.......+ ...+.++||||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-----------~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-----------ENGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-----------TTSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-----------CCCEEEEECCCcccCc
Confidence 6899999999999999999998875 45788888876543222 2368999999998653
No 210
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.18 E-value=3.7e-06 Score=90.09 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=41.1
Q ss_pred cceEEecCCccccc--ccccCchhHHHHH----hccc-CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEE
Q 014655 327 SEATLADLPGLIEG--AHLGKGLGRNFLR----HLRR-TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVL 399 (421)
Q Consensus 327 ~~i~iiDtPGlie~--a~~~~gl~~~fL~----~i~r-advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVl 399 (421)
..++++|.||+... +.++......+.+ ++.. ..+++.|+++........ ....+...++ ...+.|+|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~---~l~la~~v~~--~g~rtI~Vl 221 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE---ALSMAQEVDP--EGDRTIGIL 221 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH---HHHHHHHHCS--SCCSEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH---HHHHHHHHhh--cCCceEEEe
Confidence 35899999998763 2233333333322 2333 356677776543222222 2233344333 457899999
Q ss_pred eCCCCCCCC
Q 014655 400 NKIDLPEMY 408 (421)
Q Consensus 400 NK~Dl~~~~ 408 (421)
||.|+.+..
T Consensus 222 TK~Dlv~~g 230 (608)
T 3szr_A 222 TKPDLVDKG 230 (608)
T ss_dssp ECGGGSSSS
T ss_pred cchhhcCcc
Confidence 999998643
No 211
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.12 E-value=5.8e-06 Score=85.17 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=41.1
Q ss_pred cceEEecCCcccccccccCchhHHH--HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCC-C-EEEEEeCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLER-P-FIVVLNKI 402 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~f--L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~k-P-~IIVlNK~ 402 (421)
..+.|+||||..... ..+.... +..+..+|.+++|+|+.... ... ..++.+.. .. | ..+|+||+
T Consensus 181 ~D~vIIDT~G~~~~~---~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~----~~~~~~~~---~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEE---KGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAG----IQAKAFKE---AVGEIGSIIVTKL 248 (432)
T ss_dssp CSEEEEECCCSCSSH---HHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHH----HHHHHHHT---TSCSCEEEEEECS
T ss_pred CCEEEEcCCCCcccc---HHHHHHHHHHHHHhcCcceeEEeeccccH--HHH----HHHHHHhh---cccCCeEEEEeCC
Confidence 479999999986421 1111111 12233689999999987532 221 22333332 23 5 89999999
Q ss_pred CCCCC
Q 014655 403 DLPEM 407 (421)
Q Consensus 403 Dl~~~ 407 (421)
|....
T Consensus 249 D~~~~ 253 (432)
T 2v3c_C 249 DGSAK 253 (432)
T ss_dssp SSCST
T ss_pred CCccc
Confidence 98643
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.09 E-value=6.6e-06 Score=84.32 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=64.6
Q ss_pred eecccCCCCCChhHHHHHHhcCCC----Cc-cCCCCeeeeccceeecCCCCCCccccccceEEecCCcccccccccCchh
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKP----DI-ADYPFTTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEGAHLGKGLG 348 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~----~i-a~~pfTTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~a~~~~gl~ 348 (421)
.|+|+|.+|||||||+|+|++... .+ .+-.-+|.. +.+...+ ....++++|+||+... ....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~q~~------~~~~ltv~D~~g~~~~----~~~~ 137 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHP------NIPNVVFWDLPGIGST----NFPP 137 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEEECS------SCTTEEEEECCCGGGS----SCCH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEecccc------ccCCeeehHhhcccch----HHHH
Confidence 799999999999999999998432 12 111111211 2221111 1136899999998642 1223
Q ss_pred HHHHHhc--ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 349 RNFLRHL--RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 349 ~~fL~~i--~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
..+++.+ ...+..++ ++... ...+...+...|.. .++|+++|+||.|+.
T Consensus 138 ~~~L~~~~L~~~~~~~~-lS~G~--~~kqrv~la~aL~~-----~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 138 DTYLEKMKFYEYDFFII-ISATR--FKKNDIDIAKAISM-----MKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHTTGGGCSEEEE-EESSC--CCHHHHHHHHHHHH-----TTCEEEEEECCHHHH
T ss_pred HHHHHHcCCCccCCeEE-eCCCC--ccHHHHHHHHHHHh-----cCCCeEEEEecCccc
Confidence 3444433 44455554 66543 22333345555655 358999999999874
No 213
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.90 E-value=5.3e-06 Score=76.01 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+...+|+|+|.+|||||||+++|+..
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999865
No 214
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.78 E-value=5.3e-05 Score=78.23 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=41.3
Q ss_pred cceEEecCCcccccccccCchhHHH--HHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNF--LRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~f--L~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..++|+||||..... ..+-... +..+..+|.+++|+|+... ..... ....+.. .-.+..+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~d---~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~a~~-~a~~f~~-----~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKED---KALIEEMKQISNVIHPHEVILVIDGTIG--QQAYN-QALAFKE-----ATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSCC---HHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHH-HHHHHHH-----SCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccch---HHHHHHHHHHHHhhcCceEEEEEeCCCc--hhHHH-HHHHHHh-----hCCCeEEEEECCCC
Confidence 579999999975421 1121111 2233468999999999753 22222 2222322 12456799999998
Q ss_pred CCC
Q 014655 405 PEM 407 (421)
Q Consensus 405 ~~~ 407 (421)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 654
No 215
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.54 E-value=8.4e-05 Score=76.85 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=43.1
Q ss_pred hceecccCCCCCChhHHHHHHhcC---------------CCCccCCCCeeeeccceeecCC-CCC--CccccccceEEec
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA---------------KPDIADYPFTTLMPNLGRLDGD-PTL--GAEKYSSEATLAD 333 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~---------------~~~ia~~pfTTl~p~~g~v~~~-~~~--~~~~~~~~i~iiD 333 (421)
+.-|+|+|.+++|||||||.|.+. ...+-....||...+.|++-.. +.. ........+.++|
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 356899999999999999999864 2223223335666666665322 100 0001124699999
Q ss_pred CCccccc
Q 014655 334 LPGLIEG 340 (421)
Q Consensus 334 tPGlie~ 340 (421)
|||+.+.
T Consensus 147 TeG~~~~ 153 (447)
T 3q5d_A 147 TQGTFDS 153 (447)
T ss_dssp EECCCSS
T ss_pred CCccccc
Confidence 9998654
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.53 E-value=5.5e-05 Score=77.91 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=39.8
Q ss_pred cceEEecCCcccccccccCchhHH---HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRN---FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~---fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
..+.|+||||..... .+..+... +++. -..+.+++|+|+.... +.. .+...+.. .-.+..||+||+|
T Consensus 180 ~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~-~~pd~vlLVlDa~~gq--~a~-~~a~~f~~-----~~~~~gVIlTKlD 249 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYG-EETKLLEEMKEMYDV-LKPDDVILVIDASIGQ--KAY-DLASRFHQ-----ASPIGSVIITKMD 249 (433)
T ss_dssp CSEEEEEECCCSSSC-CTTHHHHHHHHHHHH-HCCSEEEEEEEGGGGG--GGH-HHHHHHHH-----HCSSEEEEEECGG
T ss_pred CCEEEEECCCCcccc-CCHHHHHHHHHHHHh-hCCcceEEEEeCccch--HHH-HHHHHHhc-----ccCCcEEEEeccc
Confidence 579999999964310 11222222 2222 2468999999997532 222 22233332 1246789999999
Q ss_pred CCC
Q 014655 404 LPE 406 (421)
Q Consensus 404 l~~ 406 (421)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 764
No 217
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.51 E-value=0.00014 Score=68.33 Aligned_cols=92 Identities=11% Similarity=-0.029 Sum_probs=47.9
Q ss_pred ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC--CCCCCEEEEEeCC-CC
Q 014655 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNKI-DL 404 (421)
Q Consensus 328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kP~IIVlNK~-Dl 404 (421)
++.+..+||-.+. --+..+...|..+.+.+|+||||||+++....+..+.+.+......+. +.+.|++|.+||. |+
T Consensus 97 k~~~~~~~~~~~~-GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDl 175 (227)
T 3l82_B 97 KMFSRHNEGDDQQ-GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGD 175 (227)
T ss_dssp ---------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTT
T ss_pred hcccccCCCcccc-CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCc
Confidence 3556666652111 112334555666778999999999999865444333332111223332 3578999999995 78
Q ss_pred CCCCCchHHHHhCCCC
Q 014655 405 PEMYDDSSSRQGIGFN 420 (421)
Q Consensus 405 ~~~~e~~~~l~~lGl~ 420 (421)
+.+-...+..+.++|+
T Consensus 176 p~Ams~~EI~e~L~L~ 191 (227)
T 3l82_B 176 VKRMPCFYLAHELHLN 191 (227)
T ss_dssp SCBCCHHHHHHHTTGG
T ss_pred cCCCCHHHHHHHcCCc
Confidence 7776666666777664
No 218
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.47 E-value=4.2e-05 Score=76.69 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=48.5
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCC-------hhhHHHHHHHHHhcC--CCCCCCCEEE
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENP-------VNDYRTVKEELRMYN--PDYLERPFIV 397 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~-------~~~~~~l~~eL~~~~--~~l~~kP~II 397 (421)
..+.+|||+|.... ...+..+.+.++++|||+|+++.+. ...+..+..+++... ....+.|+|+
T Consensus 193 ~~l~iwDt~GQe~~-------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiL 265 (353)
T 1cip_A 193 LHFKMFDVGGQRSE-------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 265 (353)
T ss_dssp EEEEEEEECCSGGG-------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEE
T ss_pred eeEEEEeCCCchhh-------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEE
Confidence 46899999997543 3344556789999999999998543 233333333333221 1224689999
Q ss_pred EEeCCCCC
Q 014655 398 VLNKIDLP 405 (421)
Q Consensus 398 VlNK~Dl~ 405 (421)
|+||+|+.
T Consensus 266 v~NK~DL~ 273 (353)
T 1cip_A 266 FLNKKDLF 273 (353)
T ss_dssp EEECHHHH
T ss_pred EEECcCch
Confidence 99999985
No 219
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.33 E-value=0.00014 Score=74.23 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=49.3
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFI 396 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~~~~~l~~kP~I 396 (421)
..+.+|||+|.... ...+..+.+.++++|||+|+++ ....++...+++.+... ....+.|++
T Consensus 217 v~l~iwDtaGQe~~-------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~-~~~~~~pii 288 (402)
T 1azs_C 217 VNFHMFDVGGQRDE-------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN-RWLRTISVI 288 (402)
T ss_dssp EEEEEEEECCSGGG-------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC-TTCSSCCEE
T ss_pred ccceecccchhhhh-------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc-ccCCCCeEE
Confidence 36899999997543 2334456788999999999997 33344444444444432 123568999
Q ss_pred EEEeCCCCC
Q 014655 397 VVLNKIDLP 405 (421)
Q Consensus 397 IVlNK~Dl~ 405 (421)
+|+||+|+.
T Consensus 289 LvgNK~DL~ 297 (402)
T 1azs_C 289 LFLNKQDLL 297 (402)
T ss_dssp EEEECHHHH
T ss_pred EEEEChhhh
Confidence 999999984
No 220
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.31 E-value=0.00016 Score=72.17 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=48.3
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCC----------CCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAA----------ENPVNDYRTVKEELRMYNPDYLERPFI 396 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~----------~~~~~~~~~l~~eL~~~~~~l~~kP~I 396 (421)
..+.+|||+|... ....+..+.+.++++|||+|+++ .....+...+++.+... ....+.|++
T Consensus 161 v~l~iwDtaGQe~-------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~-~~~~~~pii 232 (340)
T 4fid_A 161 IPFHLIDVGGQRS-------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN-EFLKGAVKL 232 (340)
T ss_dssp CEEEEEECCSCHH-------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC-GGGTTSEEE
T ss_pred eeeccccCCCccc-------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh-hccCCCeEE
Confidence 4789999999743 24455667889999999999983 22233333333333321 223468999
Q ss_pred EEEeCCCCCC
Q 014655 397 VVLNKIDLPE 406 (421)
Q Consensus 397 IVlNK~Dl~~ 406 (421)
+|+||+|+..
T Consensus 233 Lv~NK~DL~~ 242 (340)
T 4fid_A 233 IFLNKMDLFE 242 (340)
T ss_dssp EEEECHHHHH
T ss_pred EEEECchhhh
Confidence 9999999854
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.24 E-value=0.00024 Score=68.84 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=42.4
Q ss_pred EecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCC
Q 014655 331 LADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEM 407 (421)
Q Consensus 331 iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~ 407 (421)
|-+.||++.. ..+.++++++++|+|++|+|+.++..... ..+.+.+ .++|.++|+||+|+.+.
T Consensus 3 i~w~PGhm~k------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l-------~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 3 IQWFPGHMAK------ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL-------KNKPRIMLLNKADKADA 65 (282)
T ss_dssp ------CTTH------HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC-------SSSCEEEEEECGGGSCH
T ss_pred CcCCchHHHH------HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH-------CCCCEEEEEECcccCCH
Confidence 4567898643 35678899999999999999988765443 1222222 36999999999999874
No 222
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.21 E-value=0.00039 Score=67.71 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=48.0
Q ss_pred ceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 328 EATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 328 ~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
.+.+||| +... ..+.+ .+++.+|++++|+|++++. ....+..+..+++. .+.|+++|+||+|+.+
T Consensus 64 ~~~iwD~--qer~----~~l~~---~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 64 SGVIENV--LHRK----NLLTK---PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD 129 (301)
T ss_dssp SEEEEEE--CCCS----CEETT---TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred eEEEEEE--cccc----ceeec---cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence 5899999 3222 12322 3578999999999999876 45555666666554 3689999999999976
Q ss_pred CC
Q 014655 407 MY 408 (421)
Q Consensus 407 ~~ 408 (421)
..
T Consensus 130 ~~ 131 (301)
T 1u0l_A 130 ED 131 (301)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 223
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.20 E-value=9e-05 Score=74.54 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=44.7
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCC----------ChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAEN----------PVNDYRTVKEELRMYNPDYLERPFI 396 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~----------~~~~~~~l~~eL~~~~~~l~~kP~I 396 (421)
..+.+|||+|.... ...+..+++.++++|||+|+++.+ ...+...+++.+... ....+.|+|
T Consensus 201 ~~l~i~Dt~Gq~~~-------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~-~~~~~~piI 272 (362)
T 1zcb_A 201 VPFKMVDVGGQRSE-------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-RVFSNVSII 272 (362)
T ss_dssp EEEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEE
T ss_pred eEEEEEeccchhhh-------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc-hhhCCCCEE
Confidence 46899999997543 223445568899999999999832 233333344444321 122468999
Q ss_pred EEEeCCCCC
Q 014655 397 VVLNKIDLP 405 (421)
Q Consensus 397 IVlNK~Dl~ 405 (421)
+|+||+|+.
T Consensus 273 Lv~NK~DL~ 281 (362)
T 1zcb_A 273 LFLNKTDLL 281 (362)
T ss_dssp EEEECHHHH
T ss_pred EEEEChhhh
Confidence 999999985
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.20 E-value=0.00094 Score=65.17 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=39.9
Q ss_pred cceEEecCCcccccccccCchhHH--HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKID 403 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~--fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~D 403 (421)
..++|+||||..... ....+... -+..+..+|.+++|+|+... .+.+..+ +.+.. ..+ ..+|+||+|
T Consensus 181 ~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~----~~~~~---~~~i~gvVlnk~D 250 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYG-EEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLA----SKFNQ---ASKIGTIIITKMD 250 (297)
T ss_dssp CSEEEEECCCSCCTT-CHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHH----HHHHH---TCTTEEEEEECGG
T ss_pred CCEEEEeCCCCcccc-cHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHH----HHHHh---hCCCCEEEEeCCC
Confidence 479999999976510 00111111 01234578999999998742 2222222 22221 234 788999999
Q ss_pred CCC
Q 014655 404 LPE 406 (421)
Q Consensus 404 l~~ 406 (421)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 754
No 225
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.10 E-value=0.00016 Score=72.60 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=46.8
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCC----------CCCChhhHHHHHHHHHhcCCCCCCCCEE
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA----------AENPVNDYRTVKEELRMYNPDYLERPFI 396 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s----------~~~~~~~~~~l~~eL~~~~~~l~~kP~I 396 (421)
..+.+|||+|.... ...+..+.+.++++|+|+|++ +....++...+++++... ....+.|++
T Consensus 183 v~l~iwDtaGQe~~-------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~-~~~~~~pii 254 (354)
T 2xtz_A 183 EVYRLFDVGGQRNE-------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSFM 254 (354)
T ss_dssp -EEEEEEECCSTTG-------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC-GGGSSCEEE
T ss_pred eeeEEEECCCchhh-------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc-cccCCCeEE
Confidence 46899999997543 223445578899999999998 233333333344444331 112468999
Q ss_pred EEEeCCCCC
Q 014655 397 VVLNKIDLP 405 (421)
Q Consensus 397 IVlNK~Dl~ 405 (421)
+|+||+|+.
T Consensus 255 LvgNK~DL~ 263 (354)
T 2xtz_A 255 LFLNKFDIF 263 (354)
T ss_dssp EEEECHHHH
T ss_pred EEEECcchh
Confidence 999999984
No 226
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.10 E-value=0.00021 Score=66.03 Aligned_cols=43 Identities=28% Similarity=0.492 Sum_probs=34.7
Q ss_pred eecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeeccceeecC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDG 316 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~v~~ 316 (421)
-|+|+|++|||||||+++|.+..+. + ...+.||..|..|.+++
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G 65 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDG 65 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeecc
Confidence 5889999999999999999987652 2 56778888888776543
No 227
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.03 E-value=0.00025 Score=70.39 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=47.9
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCC-------CCCChhhHHHHHHHHHhcC--CCCCCCCEEE
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAA-------AENPVNDYRTVKEELRMYN--PDYLERPFIV 397 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s-------~~~~~~~~~~l~~eL~~~~--~~l~~kP~II 397 (421)
..+.+|||.|.... ...+..+.+.++++|||+|++ +......+.....+++... +...+.|+++
T Consensus 167 v~l~iwDtgGQe~~-------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL 239 (327)
T 3ohm_A 167 VIFRMVDVGGQRSE-------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 239 (327)
T ss_dssp EEEEEEEECCSHHH-------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEE
T ss_pred eeeEEEEcCCchhH-------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEE
Confidence 36899999997543 233445678999999999886 3223333443433333321 2234689999
Q ss_pred EEeCCCCCC
Q 014655 398 VLNKIDLPE 406 (421)
Q Consensus 398 VlNK~Dl~~ 406 (421)
|+||+|+..
T Consensus 240 ~~NK~DL~~ 248 (327)
T 3ohm_A 240 FLNKKDLLE 248 (327)
T ss_dssp EEECHHHHH
T ss_pred EEECchhhh
Confidence 999999854
No 228
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.96 E-value=0.00069 Score=66.44 Aligned_cols=76 Identities=12% Similarity=0.018 Sum_probs=49.4
Q ss_pred CchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC--CCCCCEEEEEeC-CCCCCCCCchHHHHhCCCC
Q 014655 345 KGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD--YLERPFIVVLNK-IDLPEMYDDSSSRQGIGFN 420 (421)
Q Consensus 345 ~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~--l~~kP~IIVlNK-~Dl~~~~e~~~~l~~lGl~ 420 (421)
..+...|..+.+.+|+||||||+++.+-.+..+.+.+......+. +.+.|++|.+|| .|++.+....+..+.++|+
T Consensus 198 ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~ 276 (312)
T 3l2o_B 198 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLN 276 (312)
T ss_dssp CCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCc
Confidence 445556667789999999999999875443223222111111111 357899999997 5888777666776777764
No 229
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.93 E-value=0.0013 Score=58.82 Aligned_cols=68 Identities=4% Similarity=-0.116 Sum_probs=47.5
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
..++|+|+|+.... .....+..+|.+++|++.+... .....+.+.++.........++.+|+|++|..
T Consensus 76 yD~viiD~~~~~~~---------~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSLSV---------ITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSSSH---------HHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCCCH---------HHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 47999999986532 2345567799999999987654 55566667776543222345678999999954
No 230
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.78 E-value=0.0014 Score=63.77 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.0
Q ss_pred hceecccCCCCCChhHHHHHHhcCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
..-++|+|++|||||||+|+|. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3468999999999999999999 54
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.77 E-value=0.00031 Score=69.15 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=21.6
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
..-.++|+|.+|||||||+|+|.+..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 34578999999999999999998754
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.77 E-value=0.0032 Score=64.64 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=38.9
Q ss_pred cceEEecCCcccccccccCchhHH--HHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCC-EEEEEeCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRN--FLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERP-FIVVLNKID 403 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~--fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP-~IIVlNK~D 403 (421)
..++|+||||..... ..+... -...+..++.+++|+|+.... ..+..+ ..++. ..+ .-+|+||+|
T Consensus 184 ~D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~----~~f~~---~l~i~gvVlnK~D 251 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTA----KAFNE---ALPLTGVVLTKVD 251 (433)
T ss_dssp CSEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHH----HHHHH---HSCCCCEEEECTT
T ss_pred CCEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHH----HHHhc---cCCCeEEEEecCC
Confidence 479999999975421 112111 112344688999999987542 222222 22221 123 346899999
Q ss_pred CCCC
Q 014655 404 LPEM 407 (421)
Q Consensus 404 l~~~ 407 (421)
....
T Consensus 252 ~~~~ 255 (433)
T 2xxa_A 252 GDAR 255 (433)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 7543
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.74 E-value=0.0014 Score=65.02 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.8
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.--|+|+|++|||||||++.|.+.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999763
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.73 E-value=0.00088 Score=67.30 Aligned_cols=57 Identities=26% Similarity=0.223 Sum_probs=35.9
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC--CccCCCC-------eeeeccceeecCCCCCCccccccceEEecCCccccc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP--DIADYPF-------TTLMPNLGRLDGDPTLGAEKYSSEATLADLPGLIEG 340 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~--~ia~~pf-------TTl~p~~g~v~~~~~~~~~~~~~~i~iiDtPGlie~ 340 (421)
-.++|+|.+|||||||+|+|.+... ....... ||....++.+. ....++|+||+.+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~-----------q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFP-----------HGGDVIDSPGVREF 281 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECT-----------TSCEEEECHHHHTC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEEC-----------CCCEecCcccHHHh
Confidence 4689999999999999999998653 2222211 33333333332 23468999998764
No 235
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.60 E-value=0.0037 Score=60.84 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=39.1
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcc--cCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLR--RTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~--radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..+.|+||||..... ..+...+.+.+. ..+.+++|+|++.. ..+ +.+....+.. .. ..-+|+||+|.
T Consensus 183 ~dlvIiDT~G~~~~~---~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~---~~~~~~~~~~--l~-~~giVltk~D~ 251 (296)
T 2px0_A 183 YDHVFVDTAGRNFKD---PQYIDELKETIPFESSIQSFLVLSATAK--YED---MKHIVKRFSS--VP-VNQYIFTKIDE 251 (296)
T ss_dssp SSEEEEECCCCCTTS---HHHHHHHHHHSCCCTTEEEEEEEETTBC--HHH---HHHHTTTTSS--SC-CCEEEEECTTT
T ss_pred CCEEEEeCCCCChhh---HHHHHHHHHHHhhcCCCeEEEEEECCCC--HHH---HHHHHHHHhc--CC-CCEEEEeCCCc
Confidence 479999999986431 122222223333 36778999998742 222 3333333331 22 24567899997
Q ss_pred CCC
Q 014655 405 PEM 407 (421)
Q Consensus 405 ~~~ 407 (421)
...
T Consensus 252 ~~~ 254 (296)
T 2px0_A 252 TTS 254 (296)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.59 E-value=0.0046 Score=60.50 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.5
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
-|+|+|+.|||||||++.|.+
T Consensus 104 vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 689999999999999999975
No 237
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.49 E-value=0.0026 Score=61.96 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=38.4
Q ss_pred hcccCCEEEEEeeCCCCC-ChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAEN-PVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~-~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+..+|++++|+|++++. ....++.++.+++. .++|.++|+||+|+.+..
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHH
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCcc
Confidence 578999999999999775 45544555555554 468999999999997643
No 238
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.49 E-value=0.00063 Score=65.12 Aligned_cols=58 Identities=31% Similarity=0.450 Sum_probs=39.2
Q ss_pred CcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 335 PGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 335 PGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
||++.. ..+.++++++++|++++|+|+.++...... +++ + .++|.++|+||+|+.+..
T Consensus 5 PGhm~k------a~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l----l~k~~iivlNK~DL~~~~ 62 (262)
T 3cnl_A 5 PGHIEK------AKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F----SRKETIILLNKVDIADEK 62 (262)
T ss_dssp ----CC------TTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C----TTSEEEEEEECGGGSCHH
T ss_pred chHHHH------HHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h----cCCCcEEEEECccCCCHH
Confidence 676543 245788999999999999999876543321 111 1 168999999999998753
No 239
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.46 E-value=0.0013 Score=65.95 Aligned_cols=52 Identities=23% Similarity=0.329 Sum_probs=37.2
Q ss_pred HHHHHhc-ccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 349 RNFLRHL-RRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 349 ~~fL~~i-~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+++++++ ++++++++|+|++++.. .+..++..+. .++|+++|+||+|+.+.+
T Consensus 62 ~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l---~~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 62 LSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA---ADNPILLVGNKADLLPRS 114 (369)
T ss_dssp HHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC---TTSCEEEEEECGGGSCTT
T ss_pred HHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh---CCCCEEEEEEChhcCCCc
Confidence 3567776 78899999999987542 2233344432 368999999999998754
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.44 E-value=0.0025 Score=62.46 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.9
Q ss_pred hceecccCCCCCChhHHHHHHhc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..-|+++|.+|+||||++..|..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34588999999999999999865
No 241
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.36 E-value=0.0029 Score=61.48 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=21.9
Q ss_pred hceecccCCCCCChhHHHHHHhcCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.-.++|+|++|||||||||+|.+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3468999999999999999999865
No 242
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.34 E-value=0.0039 Score=65.19 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.1
Q ss_pred hceecccCCCCCChhHHHHHHhc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.--|+|||..|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 33589999999999999999876
No 243
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.23 E-value=0.0021 Score=64.47 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=36.6
Q ss_pred HHHHHhccc-CCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 349 RNFLRHLRR-TRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 349 ~~fL~~i~r-advIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
+++++++.+ ++++++|+|++++. ..+..+|..+. .++|+++|+||+|+.+.+
T Consensus 60 ~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~---~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 60 LRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV---GNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS---SSSCEEEEEECGGGSCTT
T ss_pred HHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh---CCCcEEEEEEChhcCCcc
Confidence 355666654 56999999998531 33444555543 368999999999997654
No 244
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.07 E-value=0.0076 Score=59.34 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=20.7
Q ss_pred hhhceecccCCCCCChhHHHHHHhc
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
+...-|+++|.+|+||||++..|..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444689999999999999998864
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.84 E-value=0.0035 Score=55.78 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=28.0
Q ss_pred eecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeeccceee
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRL 314 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~v 314 (421)
-|+|+|+++||||||++.|.+..+. . .....||..|..+.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~ 49 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEE 49 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcccc
Confidence 4899999999999999999876531 2 344556666555443
No 246
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.78 E-value=0.0047 Score=56.29 Aligned_cols=43 Identities=33% Similarity=0.479 Sum_probs=35.2
Q ss_pred ecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeeccceeecCC
Q 014655 275 VGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGRLDGD 317 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~v~~~ 317 (421)
|.|+|+++||||||+++|....+. + -..+.||..|..|.+++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~ 48 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGK 48 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCc
Confidence 789999999999999999877653 3 567889998888876654
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.52 E-value=0.0041 Score=56.40 Aligned_cols=23 Identities=43% Similarity=0.494 Sum_probs=20.8
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.|+|+|++|||||||++.|.+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998753
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.35 E-value=0.012 Score=60.32 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=19.2
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.-|+++|.+++||||++..|..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999864
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.19 E-value=0.012 Score=53.61 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=29.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeecccee
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGR 313 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~ 313 (421)
-|+|+|+++||||||++.|....+. . .....||..|..+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e 51 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE 51 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence 4899999999999999999987542 2 44556666665543
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.11 E-value=0.0062 Score=54.35 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=27.3
Q ss_pred ecccCCCCCChhHHHHHHhcCCCCc--cCCCCeeeeccceee
Q 014655 275 VGLVGLPNAGKSTLLAAITHAKPDI--ADYPFTTLMPNLGRL 314 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~~~i--a~~pfTTl~p~~g~v 314 (421)
|+|+|++|||||||++.|.+..+.. .....||..|..+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~ 45 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc
Confidence 7899999999999999998765311 223344554554443
No 251
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.96 E-value=0.028 Score=55.08 Aligned_cols=51 Identities=18% Similarity=0.103 Sum_probs=35.6
Q ss_pred hcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCC
Q 014655 354 HLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMY 408 (421)
Q Consensus 354 ~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~ 408 (421)
.+..+|.+++|+|+..+++... .+...|.... ..++|.+||+||+||.+..
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~--~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVE--ANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH--HHHHHHHHHH--TTTCEEEEEEECGGGCCCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHH--HCCCCEEEEEECCccCchh
Confidence 4788999999999987655433 3334442210 1468899999999998764
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.91 E-value=0.0098 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.7
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.++|+|+++||||||++.|++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 253
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.80 E-value=0.012 Score=53.07 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=27.8
Q ss_pred eecccCCCCCChhHHHHHHhcCCCC-c-cCCCCeeeecccee
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPD-I-ADYPFTTLMPNLGR 313 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~-i-a~~pfTTl~p~~g~ 313 (421)
-|+|+|+++||||||.+.|....+. . .....||..+..+.
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e 55 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKE 55 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCC
Confidence 5889999999999999999875432 2 22344565554433
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.61 E-value=0.011 Score=54.37 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=22.7
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.+...--++|+|+++||||||++.|.+..
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 444444579999999999999999998855
No 255
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.48 E-value=0.013 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKP 297 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~ 297 (421)
-|+|+|+++||||||++.|.+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 589999999999999999987643
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.47 E-value=0.013 Score=51.78 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.4
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|+++||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 257
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.36 E-value=0.014 Score=52.81 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.0
Q ss_pred ceecccCCCCCChhHHHHHHhcCCC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAKP 297 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~~ 297 (421)
--++|+|+.+||||||++.|.+..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999988654
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.31 E-value=0.013 Score=54.36 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=27.3
Q ss_pred eecccCCCCCChhHHHHHHhcCCCC--c-cCCCCeeeec
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAKPD--I-ADYPFTTLMP 309 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~~~--i-a~~pfTTl~p 309 (421)
-++|+|+.|||||||++.|.+..+. + .....||..+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 6899999999999999999986541 2 3455555544
No 259
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.15 E-value=0.018 Score=56.38 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.5
Q ss_pred hHHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 266 ELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 266 ~leLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.+.++..-.|+|+|++|||||||++.|.+-
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 344555568999999999999999999864
No 260
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.13 E-value=0.017 Score=50.11 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.7
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|.++||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999874
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.12 E-value=0.017 Score=52.36 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=20.2
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|+|+|.++||||||++.|.+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
No 262
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.95 E-value=0.011 Score=54.28 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=17.5
Q ss_pred hhhhceecccCCCCCChhHHHHHHh-cCC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAIT-HAK 296 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt-~~~ 296 (421)
++...-|+|+|+++||||||++.|. +..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3444468999999999999999999 654
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.83 E-value=0.021 Score=50.30 Aligned_cols=27 Identities=30% Similarity=0.206 Sum_probs=23.1
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+..--++|+|+.+||||||++.|.+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444468999999999999999998865
No 264
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.67 E-value=0.016 Score=54.31 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=23.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...--++|+|+.+||||||++.|++-.
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34444479999999999999999999864
No 265
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.63 E-value=0.014 Score=54.19 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=24.4
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...--++|+|+.+||||||++.|++-.
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444478999999999999999999864
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.61 E-value=0.025 Score=50.05 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=19.2
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
-++|+|+++||||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999976
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.60 E-value=0.024 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.4
Q ss_pred ceecccCCCCCChhHHHHHHhcCC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.-|+|+|.++||||||++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998764
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.59 E-value=0.026 Score=50.70 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=22.1
Q ss_pred hhHHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+.+.+.....|+|+|+++|||||+.+.|...
T Consensus 18 ~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 18 LYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred eeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555668999999999999999999753
No 269
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.56 E-value=0.015 Score=51.23 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=17.9
Q ss_pred eecccCCCCCChhHHHHHHh
Q 014655 274 DVGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt 293 (421)
-++|+|+++||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999654
No 270
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.55 E-value=0.017 Score=54.72 Aligned_cols=30 Identities=27% Similarity=0.258 Sum_probs=24.6
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...--++|+|+.+||||||++.|++-.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344445579999999999999999999864
No 271
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.34 E-value=0.019 Score=53.86 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=23.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|+.+||||||++.|++-.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444479999999999999999998864
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.33 E-value=0.02 Score=54.60 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=24.4
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++++..--++|+|+.+||||||++.|++-.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444478999999999999999999864
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.32 E-value=0.019 Score=53.75 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=23.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...-.++|+|+.+||||||++.|++-.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444479999999999999999998864
No 274
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.30 E-value=0.02 Score=53.39 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=24.5
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.+...-.++|+|+.+||||||++.|++..
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444479999999999999999999864
No 275
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.27 E-value=0.03 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.0
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|+++||||||++.|.+.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999764
No 276
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.24 E-value=0.02 Score=54.74 Aligned_cols=30 Identities=37% Similarity=0.368 Sum_probs=24.3
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...--++|+|+.+||||||++.|++-.
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334444479999999999999999999854
No 277
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.24 E-value=0.02 Score=54.07 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=24.6
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...-.++|+|+.+||||||++.|++-.
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444579999999999999999999864
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.20 E-value=0.021 Score=53.80 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=24.8
Q ss_pred hHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 266 ELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 266 ~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.++++. --++|+|+.|||||||++.|++-.
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555 578999999999999999999864
No 279
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.20 E-value=0.019 Score=53.14 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=24.4
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...--++|+|+.+||||||++.|++-.
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444468999999999999999999864
No 280
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.18 E-value=0.021 Score=55.00 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=24.4
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.++..--++|+|+.+||||||++.|++-.
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344444478999999999999999999854
No 281
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.17 E-value=0.021 Score=54.52 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=23.7
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...--++|+|+.+||||||++.|++-.
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 33444478999999999999999999864
No 282
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.15 E-value=0.031 Score=51.97 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=22.7
Q ss_pred hhHHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+.+.+....-|+|+|..+||||||++.|.+.
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3345555567999999999999999999773
No 283
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.06 E-value=0.022 Score=53.43 Aligned_cols=29 Identities=34% Similarity=0.306 Sum_probs=23.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...--++|+|+.+||||||++.|++-.
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444478999999999999999999864
No 284
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.06 E-value=0.03 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.3
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|+|+|.++||||||++.|.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 285
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.01 E-value=0.024 Score=53.57 Aligned_cols=28 Identities=29% Similarity=0.252 Sum_probs=23.6
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
++...--++|+|+.+||||||++.|++-
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444447899999999999999999985
No 286
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.99 E-value=0.033 Score=51.23 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=22.4
Q ss_pred hhhceecccCCCCCChhHHHHHHhcC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
...-.++|+|+.+||||||++.|++.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34446899999999999999999876
No 287
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.96 E-value=0.025 Score=54.02 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=22.9
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+...--++|+|+.+||||||++.|++-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 333447899999999999999999986
No 288
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.96 E-value=0.095 Score=52.46 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=34.8
Q ss_pred cccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCCCC------chHHHHhCCC
Q 014655 355 LRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPEMYD------DSSSRQGIGF 419 (421)
Q Consensus 355 i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~~~e------~~~~l~~lGl 419 (421)
+..+|.+++| |+..+.+. ...+...|.... ..++|.+||+||+||.+..+ ....++.+|+
T Consensus 128 ~anvD~v~iv-~a~~P~~~--~~~i~r~L~~a~--~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~ 193 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELS--LNIIDRYLVGCE--TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGY 193 (358)
T ss_dssp EECCCEEEEE-EESTTTCC--HHHHHHHHHHHH--HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCEEEEE-EeCCCCCC--HHHHHHHHHHHH--hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCC
Confidence 5789999966 55444432 223333332100 03578899999999987643 2334455654
No 289
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.95 E-value=0.037 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.2
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+.-++|+|++|+|||||+++|...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 457899999999999999999864
No 290
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.94 E-value=0.024 Score=53.71 Aligned_cols=30 Identities=40% Similarity=0.355 Sum_probs=24.4
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...--++|+|+.+||||||++.|++-.
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344444478999999999999999999864
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.93 E-value=0.024 Score=53.91 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=24.6
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.+...-.++|+|+.+||||||++.|++-.
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 344445579999999999999999999864
No 292
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.92 E-value=0.024 Score=54.61 Aligned_cols=29 Identities=31% Similarity=0.300 Sum_probs=23.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...-.++|+|+.+||||||++.|++-.
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33444478999999999999999999864
No 293
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.91 E-value=0.025 Score=53.83 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=24.5
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...--++|+|+.+||||||++.|++-.
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444478999999999999999999864
No 294
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.85 E-value=0.041 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.7
Q ss_pred ceecccCCCCCChhHHHHHHh
Q 014655 273 ADVGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt 293 (421)
..|+|+|.++||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999998
No 295
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.82 E-value=0.044 Score=53.98 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=26.7
Q ss_pred hhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.+.++..-.|+|+|.++||||||+++|.+.-
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44556666689999999999999999999864
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.80 E-value=0.039 Score=48.03 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.7
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|+|+|.++|||||+++.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999998753
No 297
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.79 E-value=0.041 Score=50.25 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.2
Q ss_pred ceecccCCCCCChhHHHHHHh
Q 014655 273 ADVGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt 293 (421)
--++|+|+++||||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 368999999999999999887
No 298
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.78 E-value=0.026 Score=54.06 Aligned_cols=28 Identities=32% Similarity=0.283 Sum_probs=23.2
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+...-.++|+|+.+||||||++.|++-.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3333479999999999999999999864
No 299
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.77 E-value=0.045 Score=54.49 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=27.5
Q ss_pred hhhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 264 SLELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 264 ~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+.+.++..-.|+|+|.++||||||+++|.+.-
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 345566677789999999999999999999854
No 300
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.73 E-value=0.15 Score=46.35 Aligned_cols=78 Identities=14% Similarity=0.073 Sum_probs=49.4
Q ss_pred cceEEecCCcc-cccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 014655 327 SEATLADLPGL-IEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLP 405 (421)
Q Consensus 327 ~~i~iiDtPGl-ie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~ 405 (421)
..++|+|+|+. ... .....+..||.++++++.+.. .......+.+.++... ..++.+|+|++|..
T Consensus 68 yD~viiD~p~~~~~~---------~~~~~l~~aD~viiv~~~~~~-~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE---------DLEALADGCDLLVIPSTPDAL-ALDALMLTIETLQKLG----NNRFRILLTIIPPY 133 (209)
T ss_dssp CSEEEEEEECCCSSS---------HHHHHHHTSSEEEEEECSSHH-HHHHHHHHHHHHHHTC----SSSEEEEECSBCCT
T ss_pred CCEEEEeCCCCcCcH---------HHHHHHHHCCEEEEEecCCch-hHHHHHHHHHHHHhcc----CCCEEEEEEecCCc
Confidence 47999999986 332 234556789999999987632 2334444555565532 45688999999975
Q ss_pred C-C--CCchHHHHhCC
Q 014655 406 E-M--YDDSSSRQGIG 418 (421)
Q Consensus 406 ~-~--~e~~~~l~~lG 418 (421)
. . ++..+.++++|
T Consensus 134 ~~~~~~~~~~~l~~~g 149 (209)
T 3cwq_A 134 PSKDGDEARQLLTTAG 149 (209)
T ss_dssp TSCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHcC
Confidence 4 2 22334455554
No 301
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.69 E-value=0.042 Score=49.79 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.6
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|.++|||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999763
No 302
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.64 E-value=0.027 Score=53.36 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=23.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...--++|+|+.+||||||++.|++-.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444478999999999999999999864
No 303
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.61 E-value=0.045 Score=46.63 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.9
Q ss_pred eecccCCCCCChhHHHHHH
Q 014655 274 DVGLVGLPNAGKSTLLAAI 292 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaL 292 (421)
-|+|+|+|+|||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999999
No 304
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.56 E-value=0.038 Score=49.81 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=19.7
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
-++|+|+++||||||++.|++
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 305
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.51 E-value=0.03 Score=53.41 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=23.7
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...--++|+|+.+||||||++.|++-.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33444478999999999999999999864
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.46 E-value=0.045 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.2
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|+++||||||++.|.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6899999999999999999874
No 307
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.46 E-value=0.05 Score=46.72 Aligned_cols=22 Identities=27% Similarity=0.141 Sum_probs=19.8
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|.++|||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999754
No 308
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.42 E-value=0.048 Score=49.42 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.0
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|+|+|.++||||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999864
No 309
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.37 E-value=0.046 Score=48.85 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.8
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.|+|+|.++|||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 310
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=92.36 E-value=0.26 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.1
Q ss_pred hceecccCCCCCChhHHHHHHh
Q 014655 272 VADVGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt 293 (421)
+.-|+++|.+++|||+|+|.|.
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 4568899999999999999765
No 311
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.35 E-value=0.05 Score=47.72 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
...++|+|++|+|||||++++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999764
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.32 E-value=0.049 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.9
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|+++||||||.+.|.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 313
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.28 E-value=0.032 Score=53.28 Aligned_cols=29 Identities=34% Similarity=0.385 Sum_probs=24.5
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++. .-.++|+|+.+||||||++.|++..
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455 5579999999999999999999864
No 314
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.16 E-value=0.058 Score=46.65 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.3
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
-|.|+|.|+|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999986
No 315
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.08 E-value=0.058 Score=48.29 Aligned_cols=21 Identities=38% Similarity=0.463 Sum_probs=19.7
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.|+|+|.++|||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 316
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.01 E-value=0.025 Score=55.43 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=23.2
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++..-.|+|||+.+||||||++.|.+-.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3344479999999999999999998853
No 317
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.88 E-value=0.059 Score=48.20 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.3
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|.++||||||.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 318
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.74 E-value=0.06 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.5
Q ss_pred hceecccCCCCCChhHHHHHHhc
Q 014655 272 VADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..-|+|+|.++||||||++.|.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHh
Confidence 34689999999999999999977
No 319
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.61 E-value=0.05 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.4
Q ss_pred hceecccCCCCCChhHHHHHHhcCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
..+++|+|.++||||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998753
No 320
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.57 E-value=0.046 Score=54.92 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=23.7
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...--++|+|+.+||||||++.|.+-.
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 33444468999999999999999999864
No 321
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.57 E-value=0.076 Score=55.54 Aligned_cols=32 Identities=31% Similarity=0.235 Sum_probs=25.8
Q ss_pred hhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.+.++..-.|+|+|.++||||||+++|++.-
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33445566679999999999999999998754
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.52 E-value=0.074 Score=46.54 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.9
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..|+|+|.|+|||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 323
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.46 E-value=0.076 Score=46.86 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.4
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 488999999999999999976
No 324
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.46 E-value=0.23 Score=46.56 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.9
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
...|.|.|+||+|||+|++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999764
No 325
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.45 E-value=0.077 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|.|+|+++|||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999864
No 326
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.41 E-value=0.083 Score=50.06 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.7
Q ss_pred HHhhh---hceecccCCCCCChhHHHHHHhc
Q 014655 267 LILRV---VADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 267 leLk~---i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
+.++. ...|+|+|+++|||||+.+.|..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44555 66899999999999999999976
No 327
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.31 E-value=0.065 Score=55.34 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=26.1
Q ss_pred hhHHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 265 LELILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+.+.++....|+|+|..|||||||++.|++-
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4455566678999999999999999999875
No 328
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.30 E-value=0.067 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.289 Sum_probs=20.2
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-++|+|.+++|||||++++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.27 E-value=0.077 Score=46.29 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.2
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|+|+|+|||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 330
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.15 E-value=0.038 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|.++||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 331
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.14 E-value=0.046 Score=52.98 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=23.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.+...-.++|+|..+||||||++.|++-.
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33444478999999999999999999864
No 332
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.01 E-value=0.083 Score=46.09 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.6
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|.|.|.|+|||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999763
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.99 E-value=0.09 Score=45.86 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.3
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.|+|.|.|+|||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.99 E-value=0.079 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|.++||||||.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999875
No 335
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.88 E-value=0.057 Score=53.96 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=24.4
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...--++|+|+.+|||||||+.|.+-.
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344444468999999999999999999864
No 336
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.84 E-value=0.059 Score=53.92 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=24.3
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++++..--++|+|+.+||||||++.|.+-.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344444468999999999999999999864
No 337
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.81 E-value=0.5 Score=42.92 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=45.7
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++|+|+|+.... .....+..||.+++|++.+. ........+.+.++.++. ....+.+|+|++|...
T Consensus 119 yD~viiD~p~~~~~---------~~~~~l~~ad~viiv~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 119 YDYIIVDFGASIDH---------VGVWVLEHLDELCIVTTPSL-QSLRRAGQLLKLCKEFEK--PISRIEIILNRADTNS 186 (245)
T ss_dssp CSEEEEEEESSCCT---------THHHHGGGCSEEEEEECSSH-HHHHHHHHHHHHHHTCSS--CCSCEEEEEESTTSCT
T ss_pred CCEEEEeCCCCCch---------HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhCC--CccceEEEEecCCCCC
Confidence 36899999986532 23455788999999998753 223444555566665432 2355889999998654
Q ss_pred C
Q 014655 407 M 407 (421)
Q Consensus 407 ~ 407 (421)
.
T Consensus 187 ~ 187 (245)
T 3ea0_A 187 R 187 (245)
T ss_dssp T
T ss_pred C
Confidence 3
No 338
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.77 E-value=0.39 Score=44.05 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.3
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|.|+||+|||+|.+++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999763
No 339
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.69 E-value=0.063 Score=53.77 Aligned_cols=30 Identities=33% Similarity=0.357 Sum_probs=24.4
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...--++|+|+.+||||||++.|.+-.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344444468999999999999999999864
No 340
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.68 E-value=0.087 Score=46.19 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.6
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.-|.|+|.|+|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999975
No 341
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.67 E-value=0.064 Score=54.17 Aligned_cols=30 Identities=37% Similarity=0.328 Sum_probs=24.3
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++++..--++|+|+.+||||||++.|.+-.
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 344444468999999999999999999864
No 342
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.66 E-value=0.056 Score=54.14 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=23.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++...--++|+|+.+||||||++.|.+-.
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34444468999999999999999999864
No 343
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.65 E-value=0.087 Score=52.53 Aligned_cols=22 Identities=41% Similarity=0.366 Sum_probs=20.1
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|+++||||||+++|.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999763
No 344
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.63 E-value=0.091 Score=50.12 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.2
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|+||+|||||+++|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3899999999999999999874
No 345
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.61 E-value=0.11 Score=46.82 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=19.2
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.|+|+|.|+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999965
No 346
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.53 E-value=0.095 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.8
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|.|.++|||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 347
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.50 E-value=0.067 Score=53.77 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=24.4
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++++..--++|+|+.+|||||||+.|.+-.
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344444468999999999999999999864
No 348
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.49 E-value=0.065 Score=53.83 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=24.3
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++...--++|+|+.+|||||||+.|.+-.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 334444468999999999999999999864
No 349
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.48 E-value=0.074 Score=51.82 Aligned_cols=25 Identities=40% Similarity=0.495 Sum_probs=21.7
Q ss_pred hceecccCCCCCChhHHHHHHhcCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.-++|+|+.|||||||++.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4568899999999999999999753
No 350
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.46 E-value=0.086 Score=46.67 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.8
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|.++|||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999765
No 351
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.46 E-value=0.099 Score=48.45 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.1
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|+||+|||||+++|.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 352
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.44 E-value=0.11 Score=46.75 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.7
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+|+|+|.|+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 353
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.32 E-value=0.12 Score=45.46 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.4
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
++....|+|+|.|+|||||+.+.|...
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 344457999999999999999999764
No 354
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.28 E-value=0.49 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.0
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
+.+.|+|++|+|||||+++|.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999987
No 355
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.25 E-value=0.12 Score=50.14 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.6
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|+|+|.++||||||++.|.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999873
No 356
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.13 E-value=0.12 Score=45.87 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.2
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|.|.|+|||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 35899999999999999999763
No 357
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.12 E-value=0.1 Score=52.18 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.9
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-.|+|+|+++||||||+++|.+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999863
No 358
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.10 E-value=0.45 Score=40.32 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.1
Q ss_pred ceecccCCCCCChhHHHHHHhcCC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
..|.|.|.||+|||++..+|....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999997643
No 359
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.01 E-value=0.13 Score=44.97 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.3
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|+|+++|||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.99 E-value=0.13 Score=45.25 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.3
Q ss_pred hhhceecccCCCCCChhHHHHHHhc
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
+...-|+|+|.|+|||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3445799999999999999999975
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.98 E-value=0.14 Score=44.00 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.8
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|+|.|.++|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 362
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.97 E-value=0.1 Score=46.90 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.8
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.-|+|+|.++||||||++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 363
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.96 E-value=0.11 Score=46.43 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.1
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
-++|+|.+++|||||++.|..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999874
No 364
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.96 E-value=0.12 Score=45.51 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.6
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|.|+|.++|||||+.+.|...
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999998653
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.94 E-value=0.12 Score=48.37 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.7
Q ss_pred ceecccCCCCCChhHHHHHHh
Q 014655 273 ADVGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt 293 (421)
..|+|+|+++||||||++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.94 E-value=0.12 Score=45.19 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.7
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|.++|||||+.+.|...
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999763
No 367
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.93 E-value=0.48 Score=48.59 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.4
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|.|+||+|||+|.+++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999863
No 368
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.86 E-value=0.13 Score=44.88 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=19.1
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
-|+|+|.|+|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 369
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.79 E-value=0.95 Score=42.53 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|.|+||+|||||++++.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.67 E-value=0.14 Score=46.45 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.3
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|.|+|||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 371
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.61 E-value=0.077 Score=53.68 Aligned_cols=29 Identities=38% Similarity=0.461 Sum_probs=23.6
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++..--++|+|+.+||||||++.|.+-.
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34444479999999999999999998753
No 372
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.58 E-value=0.06 Score=53.65 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=23.8
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++..--++|+|+.+||||||++.|.+-.
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34444468999999999999999999864
No 373
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.53 E-value=0.16 Score=49.51 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.7
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..++|+|+||+|||||+++|.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999874
No 374
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.48 E-value=0.13 Score=44.87 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=19.2
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
-|+|.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999976
No 375
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.46 E-value=0.16 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.3
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.++|+|..+||||||++.|++..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
No 376
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.45 E-value=0.15 Score=45.68 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.6
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+.-|+|+|++|+|||||+.+|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998753
No 377
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.43 E-value=0.13 Score=48.47 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.5
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
-|+|+|+|++|||||+++|.+.-
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48999999999999999998753
No 378
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.40 E-value=0.15 Score=44.60 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..|.|+|.++|||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4688999999999999999974
No 379
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.36 E-value=0.13 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=20.1
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|+++||||||+++|.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 380
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.24 E-value=0.14 Score=49.84 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=22.1
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
++..--|+|+|..|||||||++.|.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 334446899999999999999999763
No 381
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.23 E-value=0.14 Score=44.92 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.6
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|.|.++|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999764
No 382
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.23 E-value=0.14 Score=44.80 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.2
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-.+|+|..++|||||+.+|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999998653
No 383
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.11 E-value=1.1 Score=41.57 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=45.2
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl 404 (421)
..++|+|+|+.... .....+..||.+++|+..+. ........+.+.++.+.. +.++.+|+|+++.
T Consensus 145 yD~viiD~pp~~~~---------~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~~---~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 145 YDYIVIDTNPSLDV---------TLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLNL---FLPIFLIITRFKK 209 (267)
T ss_dssp CSEEEEEECSSCSH---------HHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTTC---CCCEEEEEEEECT
T ss_pred CCEEEEECcCCccH---------HHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHhc---cCCEEEEEecccC
Confidence 36899999985432 23455677999999999854 334555666667776542 4577899999953
No 384
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.11 E-value=0.053 Score=54.05 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=24.5
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++++..--++|+|+.+||||||++.|.+-.
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344444478999999999999999999864
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.06 E-value=0.059 Score=48.20 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.3
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|.++|||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999653
No 386
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.93 E-value=0.14 Score=45.57 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.9
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.-|+|.|.++|||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 387
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.90 E-value=0.83 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|.|+||+|||+|.+++.+.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc
Confidence 45899999999999999999863
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.89 E-value=0.15 Score=45.99 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.3
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
+|+|+|.|+|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 389
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.86 E-value=0.17 Score=47.60 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.3
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|+|.|+|||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 390
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.81 E-value=0.17 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.8
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|+|+|.|+|||||+.+.|...
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 391
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.81 E-value=0.13 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.5
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|..+||||||++.|.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999876
No 392
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.77 E-value=0.15 Score=45.49 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=20.0
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.-|+|.|.++|||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 393
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.77 E-value=0.15 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.5
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|.++||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.76 E-value=0.18 Score=43.39 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.7
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|+|.|.++|||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 395
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.75 E-value=0.16 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.4
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|.|+|||||+.+.|...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 396
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.73 E-value=0.12 Score=54.70 Aligned_cols=30 Identities=30% Similarity=0.321 Sum_probs=24.6
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++++..-.++++|+.|||||||++.|.+-.
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344445589999999999999999998853
No 397
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.70 E-value=0.14 Score=48.71 Aligned_cols=26 Identities=19% Similarity=0.089 Sum_probs=21.2
Q ss_pred hhhceecccCCCCCChhHHHHHHhcC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
...--++|+|.|++|||||++.|...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 33346899999999999999998753
No 398
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.63 E-value=0.17 Score=44.21 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=19.6
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
+.|+|+|.|+|||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 399
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.53 E-value=0.87 Score=42.45 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|.|.||+|||+|..++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999999864
No 400
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.47 E-value=0.15 Score=44.36 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=16.0
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|.|.|+|||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999753
No 401
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.31 E-value=0.17 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.1
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
-++|+|+.+||||||++.|++..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999864
No 402
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.30 E-value=0.17 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.8
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|.++|||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 36899999999999999999875
No 403
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.29 E-value=0.17 Score=44.05 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.0
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|+|+|.|+|||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 404
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.24 E-value=0.94 Score=46.28 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.9
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|.|.|+||+|||+|.+++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 405
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.22 E-value=0.18 Score=45.68 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=19.7
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
-++|+|.+++|||||+..|+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 588999999999999999987
No 406
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.21 E-value=0.11 Score=55.05 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=24.4
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++++..-.++++|+.|||||||++.|.+-.
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 344444589999999999999999998853
No 407
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.16 E-value=0.13 Score=50.94 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=24.7
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.+...-.++|+|..+||||||++.|++..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334455589999999999999999999864
No 408
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.12 E-value=0.11 Score=54.95 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=24.1
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++..-.++|+|+.|||||||++.|.+-.
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34444579999999999999999998853
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.09 E-value=0.22 Score=44.89 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=21.5
Q ss_pred hhhhceecccCCCCCChhHHHHHHhc
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
+....-|+|+|.++|||||+.+.|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34445689999999999999999865
No 410
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.04 E-value=0.19 Score=45.37 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=19.9
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.-|+|+|.++|||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 411
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=87.94 E-value=0.11 Score=54.73 Aligned_cols=30 Identities=37% Similarity=0.407 Sum_probs=24.5
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++++..-.++++|+.|||||||++.|.+-.
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344444589999999999999999998853
No 412
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.78 E-value=0.2 Score=44.67 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.5
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
-++|+|.+++|||||+..|..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 413
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.74 E-value=0.21 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=21.3
Q ss_pred hhceecccCCCCCChhHHHHHHhcC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
...-|+|+|++++|||||+++|.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3346899999999999999999863
No 414
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.68 E-value=1.4 Score=42.64 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.4
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|.|+||+|||+|.+++.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 35889999999999999999864
No 415
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.64 E-value=0.24 Score=43.99 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.2
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|.|.++|||||+.+.|...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 416
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.62 E-value=0.23 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.3
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
.++|+|..+||||||++.|++..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999864
No 417
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.61 E-value=0.22 Score=42.60 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.3
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|+|.||+|||+|++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 418
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.58 E-value=0.18 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.2
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|+|.|+|||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 419
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.58 E-value=0.1 Score=48.76 Aligned_cols=22 Identities=45% Similarity=0.422 Sum_probs=19.7
Q ss_pred ecccCCCCCChhHHHHHHhcCC
Q 014655 275 VGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
++|+|+.+||||||+++|++..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5899999999999999998753
No 420
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.45 E-value=0.21 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=19.6
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.-|+|+|.++||||||.+.|..
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 421
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.43 E-value=0.24 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.2
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|+|.|+|||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999653
No 422
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.40 E-value=0.22 Score=53.24 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.2
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
-++|+|+.|||||||++.|++..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 68999999999999999999864
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.38 E-value=0.25 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.5
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|+|+|.|+|||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999753
No 424
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.25 E-value=1.2 Score=45.71 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.1
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|.|.|+||+|||+|.+++.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 5899999999999999999864
No 425
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.24 E-value=0.25 Score=42.52 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.2
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-.|+|.|.++|||||+.+.|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 426
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.13 E-value=0.23 Score=47.62 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.1
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|+|+|+||||||.++|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999754
No 427
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.12 E-value=1 Score=42.63 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=42.6
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDLP 405 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl~ 405 (421)
..++|+|||+..... ........||.+|+|+.... ..........+.|+. .+.+++ +|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~--------d~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~-----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT--------DAQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA-----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS--------HHHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT-----TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH--------HHHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh-----CCCCEEEEEEeCCcCC
Confidence 369999999975421 11223356899999999864 345555666666664 234554 899999864
Q ss_pred C
Q 014655 406 E 406 (421)
Q Consensus 406 ~ 406 (421)
.
T Consensus 258 ~ 258 (271)
T 3bfv_A 258 K 258 (271)
T ss_dssp -
T ss_pred C
Confidence 3
No 428
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.09 E-value=0.22 Score=49.72 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=22.2
Q ss_pred hhhhceecccCCCCCChhHHHHHHhcC
Q 014655 269 LRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 269 Lk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
++..--|+|||..+||||||++.|.+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 334446899999999999999999763
No 429
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.04 E-value=0.22 Score=51.75 Aligned_cols=27 Identities=33% Similarity=0.247 Sum_probs=22.4
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.+.. --++|+|+.+||||||++.|.+-
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 3444 46899999999999999999874
No 430
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.91 E-value=0.24 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.3
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|+|+|+++||||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999999753
No 431
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.85 E-value=0.31 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.0
Q ss_pred hhceecccCCCCCChhHHHHHHhc
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
....|+|.|.|+|||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 432
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.82 E-value=1.3 Score=44.99 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.4
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|.|+||+|||+|.+++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 35889999999999999999864
No 433
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=86.75 E-value=0.18 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.4
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|+|.|+|||||+.+.|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 434
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.73 E-value=0.25 Score=45.76 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|+|+||+|||||+++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 435
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.64 E-value=0.92 Score=46.45 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|.|+||+|||+|.+++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 436
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.56 E-value=0.27 Score=42.41 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=17.4
Q ss_pred ecccCCCCCChhHHHHHHh
Q 014655 275 VGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt 293 (421)
.+|+|+.++|||||+.+|.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999985
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.55 E-value=0.2 Score=51.34 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=24.7
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.+...-.++|+|..+||||||++.|.+..
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344455589999999999999999999864
No 438
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=86.47 E-value=0.11 Score=54.74 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=23.9
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++..-.++++|+.|||||||++.|.+--
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34444479999999999999999998753
No 439
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.44 E-value=2 Score=39.79 Aligned_cols=65 Identities=14% Similarity=-0.012 Sum_probs=40.4
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl 404 (421)
+.++|+|+|+..... .... ..+..+|.+++|+..... .......+.+.++.. +.+++ +|+|+.|.
T Consensus 129 yD~ViID~pp~~~~~------~~~~-~~~~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 129 LDHLLIDLPPGTGDA------PLTV-MQDAKPTGVVVVSTPQEL-TAVIVEKAINMAEET-----NTSVLGLVENMSYF 194 (262)
T ss_dssp CSEEEEECCSSSSSH------HHHH-HHHHCCSEEEEEECSSSC-CHHHHHHHHHHHHTT-----TCCEEEEEETTCCE
T ss_pred CCEEEEECcCCCchH------HHHH-HhhccCCeEEEEecCccc-hHHHHHHHHHHHHhC-----CCCEEEEEECCCcc
Confidence 368999999865321 0111 122368999999987643 344555555556542 45666 89999884
No 440
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=86.30 E-value=1.2 Score=40.21 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=43.6
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++|+|+|+.... .....+..+|.+++|++... ........+.+.++... ....-+|+|+.|...
T Consensus 112 yD~viiD~~~~~~~---------~~~~~~~~ad~vi~v~~~~~-~~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 112 FDFILIDCPAGLQL---------DAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVLKKAG----LAILGFVLNRYGRSD 177 (237)
T ss_dssp CSEEEEECCSSSSH---------HHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHHHHTT----CEEEEEEEEEETSCT
T ss_pred CCEEEEECCCCcCH---------HHHHHHHHCCeEEEEecCCc-ccHHHHHHHHHHHHhCC----CceEEEEEecCCccc
Confidence 36899999985431 34456788999999998753 22334444555555531 244678999998654
Q ss_pred C
Q 014655 407 M 407 (421)
Q Consensus 407 ~ 407 (421)
.
T Consensus 178 ~ 178 (237)
T 1g3q_A 178 R 178 (237)
T ss_dssp T
T ss_pred c
Confidence 4
No 441
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.20 E-value=1.7 Score=42.92 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|.|.||+|||+|..+|...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999764
No 442
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.07 E-value=0.46 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|.|+||+|||||++++...
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999864
No 443
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.01 E-value=0.14 Score=54.16 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=23.7
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+++..-.++++|+.+||||||++.|.+--
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 33444479999999999999999998753
No 444
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.98 E-value=0.29 Score=48.61 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=17.7
Q ss_pred ecccCCCCCChhHHHHHHh
Q 014655 275 VGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt 293 (421)
.+|+|..+||||||+++|+
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999987
No 445
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.92 E-value=0.23 Score=52.10 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.7
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
..-.++|+|+.+||||||++.|++..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999999864
No 446
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=85.91 E-value=0.82 Score=43.48 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=42.2
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEE-EEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFI-VVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~I-IVlNK~Dl 404 (421)
..++|+|||+..... .+...+..||.+++|++.+. ........+.+.++.... ..+.+++ +|+|+++-
T Consensus 157 yD~ViiD~p~~~~~~--------~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~-~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 157 TDVVIFDVLGDVVCG--------GFAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSK-NYKVRLAGCVANRSRA 225 (307)
T ss_dssp CSEEEEEECCSSCCG--------GGGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTT-TCCCEEEEEEEESCSC
T ss_pred CCEEEEeCCCccchH--------HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhh-cCCCceEEEEEecCCc
Confidence 479999998865421 12244678999999998653 223444445556655421 1234444 89999984
No 447
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.82 E-value=0.34 Score=44.41 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|+|.|+|||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 448
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.66 E-value=0.34 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.5
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|.|+|+|+|||+|....|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 449
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.63 E-value=0.31 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.9
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..-|+|.|.++|||||+++.|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999999764
No 450
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.29 E-value=0.25 Score=51.91 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.8
Q ss_pred hhhceecccCCCCCChhHHHHHHhcCC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+..--++|+|+.+||||||++.|++..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334468999999999999999999864
No 451
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.22 E-value=0.35 Score=44.96 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=21.7
Q ss_pred hhhhc---eecccCCCCCChhHHHHHHhcC
Q 014655 269 LRVVA---DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 269 Lk~i~---~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
++.++ .+.+.|+||+||||+..+|.+.
T Consensus 52 ~~~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 52 LKGTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHTCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HhcCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 34455 6899999999999999888653
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.04 E-value=0.35 Score=45.73 Aligned_cols=21 Identities=29% Similarity=0.359 Sum_probs=19.2
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
-|.|+|.|+|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 453
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.76 E-value=0.36 Score=43.24 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.7
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
...|.|.|.||+|||||+.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998753
No 454
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.76 E-value=0.28 Score=52.31 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.5
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
..-.++|+|+.+||||||++.|++..
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999864
No 455
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.65 E-value=0.39 Score=43.43 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|+|+|.++|||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999764
No 456
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.53 E-value=0.39 Score=44.59 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..|+|.|.++|||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999876
No 457
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.52 E-value=0.37 Score=42.55 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.4
Q ss_pred eecccCCCCCChhHHHHHHhc
Q 014655 274 DVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.|+|.|.++|||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 458
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.45 E-value=1.5 Score=36.91 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=20.8
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
...|.|.|.||+|||++.+++...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 346899999999999999999764
No 459
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=84.37 E-value=0.18 Score=58.58 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=24.3
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+.++-.-+|||||.+|||||||++.|.+-
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 44455558999999999999999999874
No 460
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.30 E-value=0.39 Score=42.56 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.3
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.|.|.+|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999763
No 461
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.27 E-value=0.39 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.9
Q ss_pred eecccCCCCCChhHHHHHHhcCC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
-++|+|+.+||||||++.|++..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37999999999999999999864
No 462
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.20 E-value=0.8 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.9
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|.|.|+||+|||+|.+++...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999864
No 463
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.06 E-value=0.3 Score=41.74 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
...|.|+|.|++|||+|+.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999998764
No 464
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.81 E-value=0.49 Score=41.73 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.4
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-+.|.|.+++|||||+.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 465
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.73 E-value=0.36 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=20.3
Q ss_pred hhceecccCCCCCChhHHHHHHhc
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..--++|+|.+++|||||+..|..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 334688999999999999998875
No 466
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=83.61 E-value=2.4 Score=38.61 Aligned_cols=68 Identities=16% Similarity=0.058 Sum_probs=41.3
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCC----CCCCCCEEEEEeCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNP----DYLERPFIVVLNKI 402 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~----~l~~kP~IIVlNK~ 402 (421)
..++|+|+|+-.. ......+..||.+++|++.+. ........+.+.++.... ......+.+|+|+.
T Consensus 114 yD~viiD~p~~~~---------~~~~~~l~~ad~vi~v~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 114 FEFIVCDSPAGIE---------TGALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp CSEEEEECCSSSS---------HHHHHHHHTCSEEEEEECSSH-HHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCEEEEcCCCCCC---------HHHHHHHHhCCEEEEEecCCh-hHHHHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 4689999998442 234556778999999998753 223333334444433210 00124678999998
Q ss_pred CC
Q 014655 403 DL 404 (421)
Q Consensus 403 Dl 404 (421)
|.
T Consensus 184 ~~ 185 (260)
T 3q9l_A 184 NP 185 (260)
T ss_dssp CH
T ss_pred Cc
Confidence 84
No 467
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=83.31 E-value=3.1 Score=39.69 Aligned_cols=67 Identities=18% Similarity=0.083 Sum_probs=45.1
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++|+|||...... ........||.+|+|++... ..........+.|+... ...+-+|+|++|...
T Consensus 202 yD~VIIDtpp~~~~~--------da~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g----~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT--------DAAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG----IPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT--------HHHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT----CCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH--------HHHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC----CCEEEEEEcCccccc
Confidence 359999999975421 12334567999999999764 33555666666776633 234578999998654
No 468
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=83.29 E-value=2.6 Score=40.35 Aligned_cols=67 Identities=10% Similarity=0.015 Sum_probs=43.3
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++|+|||+..... ...-....||.+|+|+..... .........+.|+.... ...-+|+|++|...
T Consensus 214 yD~VIIDtpp~~~~~--------d~~~l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~~~~----~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS--------DAAVVGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQAGV----NIKGAILNGVIKRA 280 (299)
T ss_dssp CSEEEEECCCTTTCT--------HHHHHGGGCSEEEEEEETTTS-CTTHHHHHHHHHHHTTC----CCCCEEEEECCCCC
T ss_pred CCEEEEcCCCCchhH--------HHHHHHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHhCCC----CeEEEEEeCCccCC
Confidence 369999999975421 112234679999999997653 34555666666766321 22347899998653
No 469
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=83.21 E-value=1.8 Score=44.22 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.6
Q ss_pred hceecccCCCCCChhHHHHHHhcCC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+..|.|.|+||+|||||.++|.+.-
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Confidence 3568999999999999999998653
No 470
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.10 E-value=0.48 Score=43.43 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..|+|+|.+++||||+.+.|..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 471
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=83.02 E-value=0.93 Score=40.93 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=41.9
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKID 403 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~D 403 (421)
..++|+|+|+.... .....+..||.+++|++.+. ........+.+.+..+.. ..+.+|+|+.+
T Consensus 132 yD~viiD~pp~~~~---------~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~~~~~~----~~~~~v~N~~~ 194 (254)
T 3kjh_A 132 KEAVVMDMGAGIEH---------LTRGTAKAVDMMIAVIEPNL-NSIKTGLNIEKLAGDLGI----KKVRYVINKVR 194 (254)
T ss_dssp CSEEEEEECTTCTT---------CCHHHHTTCSEEEEEECSSH-HHHHHHHHHHHHHHHHTC----SCEEEEEEEEC
T ss_pred CCEEEEeCCCcccH---------HHHHHHHHCCEEEEecCCCH-HHHHHHHHHHHHHHHcCC----ccEEEEEeCCC
Confidence 36899999985432 12345688999999998753 223444445555555431 45789999998
No 472
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.94 E-value=0.43 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.8
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..|+|.|.++|||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999973
No 473
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.90 E-value=0.53 Score=44.10 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.9
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..|+|+|+++|||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 474
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=82.83 E-value=0.48 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..|.++|+|+|||||+.+.|...
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 475
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.80 E-value=2 Score=43.63 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|.|+||+|||+|..+|.+.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999864
No 476
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=82.71 E-value=0.36 Score=47.44 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=20.7
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
...+.|.|+||+|||++++++...
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999998754
No 477
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=82.13 E-value=1.5 Score=42.18 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=18.8
Q ss_pred ecccCCCCCChhHHHHHHhcC
Q 014655 275 VGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+.|.|.+|+|||||+.++...
T Consensus 41 ~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999753
No 478
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.05 E-value=0.25 Score=55.59 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.7
Q ss_pred hhHHhhhhceecccCCCCCChhHHHHHHhcCC
Q 014655 265 LELILRVVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 265 l~leLk~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
+.+.++..-.|+|+|..|||||||++.|++..
T Consensus 692 VSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33556666689999999999999999999864
No 479
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=81.98 E-value=0.61 Score=43.74 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.0
Q ss_pred ceecccCCCCCChhHHHHHHhc
Q 014655 273 ADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
.++||+|.|+|||||+...|..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
No 480
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=81.71 E-value=0.55 Score=47.40 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=19.5
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|.|+|+|+|||||+.+.|...
T Consensus 260 lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4788999999999999999764
No 481
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=81.68 E-value=0.57 Score=40.91 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.7
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|.|.|.+++|||+|+.++...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 482
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=81.68 E-value=0.56 Score=43.44 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=19.8
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
-|.|.|+||+|||+|+++|.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999764
No 483
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=81.56 E-value=0.61 Score=42.16 Aligned_cols=19 Identities=42% Similarity=0.548 Sum_probs=17.1
Q ss_pred ecccCCCCCChhHHHHHHh
Q 014655 275 VGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt 293 (421)
.+|+|..++|||||+.+|.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999999985
No 484
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=81.43 E-value=0.65 Score=42.98 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.4
Q ss_pred hhhceecccCCCCCChhHHHHHHhcC
Q 014655 270 RVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 270 k~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+...-|.|+|+|+|||+|....|+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33334678899999999999998753
No 485
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=81.40 E-value=0.55 Score=42.47 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=17.2
Q ss_pred eecccCCCCCChhHHHHHHh
Q 014655 274 DVGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt 293 (421)
-++|+|.|++|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999977664
No 486
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=81.32 E-value=0.12 Score=51.40 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=21.6
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHh
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt 293 (421)
+++... .++|+|..+|||||||++|.
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 445555 78999999999999999984
No 487
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=80.99 E-value=0.39 Score=50.68 Aligned_cols=25 Identities=40% Similarity=0.375 Sum_probs=21.6
Q ss_pred hhceecccCCCCCChhHHHHHHhcC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
....|+|+|+++||||||+++|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3456899999999999999999864
No 488
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.88 E-value=0.59 Score=44.69 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|.|+||+|||+|+++|.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999999864
No 489
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.79 E-value=0.39 Score=54.11 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=23.0
Q ss_pred HhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 268 ILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 268 eLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.+...-.++|+|..|||||||++.|.+.
T Consensus 457 ~I~~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 457 RLKRARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444447999999999999999999854
No 490
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=80.78 E-value=1.7 Score=40.12 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=41.3
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCC-CCCCCE-EEEEeCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPD-YLERPF-IVVLNKIDL 404 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~-l~~kP~-IIVlNK~Dl 404 (421)
..++|+|+|+.... .....+..||.+++|++.+.. .......+.+.++..... ..+.++ -+|+|+.|.
T Consensus 112 yD~iiiD~pp~~~~---------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 112 YDLVLLDAPPSLSP---------LTLNALAAAEGVVVPVQAEYY-ALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp CSEEEEECCSSCCH---------HHHHHHHHCSEEEEEEESSTH-HHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred CCEEEEeCCCCCCH---------HHHHHHHHCCeEEEEecCchH-HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 46999999986432 123445679999999997642 233333344444332100 023455 489999986
Q ss_pred CC
Q 014655 405 PE 406 (421)
Q Consensus 405 ~~ 406 (421)
..
T Consensus 182 ~~ 183 (257)
T 1wcv_1 182 RT 183 (257)
T ss_dssp TC
T ss_pred Cc
Confidence 43
No 491
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=80.72 E-value=2.7 Score=39.95 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=17.0
Q ss_pred ecccCCCCCChhHHHHHHhcC
Q 014655 275 VGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 275 V~LVG~pNaGKSSLLnaLt~~ 295 (421)
+.+.|+||+|||+++.++.+.
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 345566999999999999764
No 492
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.63 E-value=0.83 Score=43.73 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.5
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
..+.|.|+||+|||||++++.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999764
No 493
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=80.48 E-value=0.35 Score=55.90 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=0.0
Q ss_pred hhhhHHhhhhceecccCCCCCChhHHHHHHhc
Q 014655 263 VSLELILRVVADVGLVGLPNAGKSTLLAAITH 294 (421)
Q Consensus 263 ~~l~leLk~i~~V~LVG~pNaGKSSLLnaLt~ 294 (421)
..+.++++..-.++|||..|||||||++.|.+
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
No 494
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=80.33 E-value=1.3 Score=40.71 Aligned_cols=66 Identities=18% Similarity=0.204 Sum_probs=42.6
Q ss_pred cceEEecCCcccccccccCchhHHHHHhcccCCEEEEEeeCCCCCChhhHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 014655 327 SEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHVIDAAAENPVNDYRTVKEELRMYNPDYLERPFIVVLNKIDLPE 406 (421)
Q Consensus 327 ~~i~iiDtPGlie~a~~~~gl~~~fL~~i~radvIl~VvD~s~~~~~~~~~~l~~eL~~~~~~l~~kP~IIVlNK~Dl~~ 406 (421)
..++|+|+|+.... .....+..+|.+++|++.... ...+...+.+.++... ....-+|+|++|...
T Consensus 111 yD~viiD~~~~~~~---------~~~~~~~~ad~vi~v~~~~~~-~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~~~ 176 (263)
T 1hyq_A 111 TDILLLDAPAGLER---------SAVIAIAAAQELLLVVNPEIS-SITDGLKTKIVAERLG----TKVLGVVVNRITTLG 176 (263)
T ss_dssp CSEEEEECCSSSSH---------HHHHHHHHSSEEEEEECSSHH-HHHHHHHHHHHHHHHT----CEEEEEEEEEECTTT
T ss_pred CCEEEEeCCCCCCh---------HHHHHHHHCCEEEEEeCCChh-HHHHHHHHHHHHHhcC----CCeeEEEEccCCccc
Confidence 36899999975431 234556789999999986532 2334444555565532 244678999998644
No 495
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=80.12 E-value=0.36 Score=55.98 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=24.6
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHhcC
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
++++..-.|+|||..|+|||||++.|.+.
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 44555568999999999999999999875
No 496
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=80.07 E-value=0.71 Score=44.68 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=20.1
Q ss_pred eecccCCCCCChhHHHHHHhcC
Q 014655 274 DVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 274 ~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.|.|.|++++|||||++++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 497
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.87 E-value=0.61 Score=44.86 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.2
Q ss_pred ceecccCCCCCChhHHHHHHhcC
Q 014655 273 ADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 273 ~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
.-|.|.|.+++|||||++++.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999763
No 498
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=79.81 E-value=0.3 Score=52.40 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=21.6
Q ss_pred HHhhhhceecccCCCCCChhHHHHHHh
Q 014655 267 LILRVVADVGLVGLPNAGKSTLLAAIT 293 (421)
Q Consensus 267 leLk~i~~V~LVG~pNaGKSSLLnaLt 293 (421)
+.+...--++|+|+.+||||||++.+.
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 444555578999999999999998653
No 499
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.71 E-value=0.73 Score=44.61 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=20.9
Q ss_pred hceecccCCCCCChhHHHHHHhcC
Q 014655 272 VADVGLVGLPNAGKSTLLAAITHA 295 (421)
Q Consensus 272 i~~V~LVG~pNaGKSSLLnaLt~~ 295 (421)
++.+.|.|+||+||||+++++.+.
T Consensus 46 ~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 46 LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999864
No 500
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=79.43 E-value=0.63 Score=45.93 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=21.7
Q ss_pred hhceecccCCCCCChhHHHHHHhcCC
Q 014655 271 VVADVGLVGLPNAGKSTLLAAITHAK 296 (421)
Q Consensus 271 ~i~~V~LVG~pNaGKSSLLnaLt~~~ 296 (421)
..--++|+|.+++|||||+..|+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33468899999999999999998653
Done!