BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014658
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 163/392 (41%), Positives = 207/392 (52%), Gaps = 38/392 (9%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L L P +PR + H+ +I ++ Q+I AYV + GDV F V P YG LS Q L+
Sbjct: 103 LNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQ 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+AG RV V KRNP DF LWK +K GEPSW SPWG GRPGWHIECSAM+ L + FD
Sbjct: 163 LQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG DL+FPHHENEIAQS A V+YWMH+G V + EKMSKSLGNFFT+R + +
Sbjct: 223 IHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLK 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
Y +R+FL+S HYRS LNYS L A A+ +Y L+ + ++P AR
Sbjct: 283 YYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEAR- 341
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLSLI 302
F M DD NT + F A +N L ++
Sbjct: 342 --------------FIEAMDDDFNTPEAYSVLFDMA-----REVNRLKAEDMAAAN-AMA 381
Query: 303 ESLRKIENEVKEVLRILGLL--PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 360
LRK+ +LGLL P A+ + Q D + E LI++R AR
Sbjct: 382 SHLRKLSA-------VLGLLEQEPEAFLQSGAQADDSEVAEIE-------ALIQQRLDAR 427
Query: 361 KNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
K KD++ +D R L GI L D + T WR
Sbjct: 428 KAKDWAAADAARDRLNEMGIVLEDGPQGTTWR 459
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/390 (40%), Positives = 212/390 (54%), Gaps = 36/390 (9%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L+ L P +PR + ++ +I +I ++++N AY + GDVFF V + +YG+LS + L+
Sbjct: 106 LRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDE 165
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+AG RV V KR+P DF LWK AK GEP WDSPWG GRPGWHIECSA S+ L FD
Sbjct: 166 LQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAXSSSILGQPFD 225
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG+DL FPHHENEIAQS A + V W H G + N EK SKSLGN +IR+ +
Sbjct: 226 IHGGGLDLKFPHHENEIAQSEAGEEKPFVKLWXHAGLLEINKEKXSKSLGNIISIREALK 285
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
LR+FL+S HYR+PL+YS L++ A+ Y L+ P H KT+
Sbjct: 286 ESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGL-----PVVNHEKTSSY 340
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLSLI 302
D F+ DD NT F+ ++ IN + + I
Sbjct: 341 T-----------DRFYEAXDDDFNTPIAFALLFE-XVREINRFRDN-----------NQI 377
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKN 362
E + E+K + I GLL YS +Q A K A++ E + +LI++R AR
Sbjct: 378 EKAAVLAAELKCLGNIFGLL---QYSP--EQFLQGAKKEADVQE--IKKLIDQRNEARAK 430
Query: 363 KDFSKSDQIRADLTRKGIALMDMGKETIWR 392
KD+ +DQIR LT G+A+ D T WR
Sbjct: 431 KDWKTADQIRDQLTDLGVAIEDSSDGTSWR 460
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 181/400 (45%), Gaps = 50/400 (12%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL-EN 62
L + P S H+ + +++ + Y G+V+F +YG ++G L +
Sbjct: 133 LNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDK 192
Query: 63 NRAGERVAVDSRKRNPADFALW---KAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 119
+ RV VD KRN DF LW K E WDSPWG G P WH+EC+AM+ Y
Sbjct: 193 DMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKD 252
Query: 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179
DIH GG+D I HH NEIA + ++H + + KMSKS GNF T++
Sbjct: 253 ALDIHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKD 312
Query: 180 ITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK 238
+ ++ + PL R+ +++HYR+ L +S+ L ++ A ++ LS F E
Sbjct: 313 LEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIA-------RENLINKLSYFYESLD 365
Query: 239 TARINPAAEDCIN-------KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXX 291
+N +D N + D F ++S DLN + L L
Sbjct: 366 PVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLA----------------LLW 409
Query: 292 XXXXXXXLSLIESLRK--IENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDV 349
LS + LR I +E+ + E+L+ L++ + + +E++
Sbjct: 410 EIIKSDNLSFVSKLRLAFIFDEI---------MSLNLREEILKNLQNHDV----VIDENM 456
Query: 350 LQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKET 389
LIEER A+ K+F ++D+IR +KG L+D + T
Sbjct: 457 KALIEERRIAKCEKNFKRADEIRDFFAKKGFVLVDTKEGT 496
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 146/294 (49%), Gaps = 32/294 (10%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLS 56
MA L+ LPP +D + ++ +M+ +++ + AY+VE DV+F + + +G S
Sbjct: 117 MAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYES 176
Query: 57 GQRLEN--NRAGERVAVDSR--KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAM 112
G + ER R K + D LW+A + GEPSW SP+G GRPGWH+ECSA+
Sbjct: 177 GYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAI 236
Query: 113 SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS-YWMHNGHVTNNNEKMSKSL 171
+ + + DI GGG DLIFPHHE A + + + + +++H G + + KMSKS
Sbjct: 237 ALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSR 296
Query: 172 GNFFTIRQI-TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230
GN + Q+ + P A+R L S HYR +S LD A +A +++ A
Sbjct: 297 GNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEA-NARLARWRSATALPEA- 354
Query: 231 SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT---GAFQDALKF 281
P A D I ++R ++DDL+T L G DAL +
Sbjct: 355 -------------PDATDVIARVRQ----YLADDLDTPKALAALDGWCTDALSY 391
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
+G + N EKMSKS+GN ++ ERY LR+FL+
Sbjct: 312 HGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLM 349
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSL 171
++ YL S+ G I++ P +I +C +D+ ++Y +N +T + ++
Sbjct: 331 LTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPK---TYTI 387
Query: 172 GNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 214
N F + ++TE LRH + +A + L +++ + +D
Sbjct: 388 ANQFPLNKLTE-----LLRHDMAAAGFTEALTFALCSQEDIAD 425
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 104 GWHIECSAMSAHYLSSKFDIHGGGIDLIFPH-HENEIAQSCAACQDSNVSYWMHNGHVTN 162
GW E + A Y D+ G D++F E++ + + +H +
Sbjct: 468 GWPEETEDLKAFYPG---DVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDE 524
Query: 163 NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
+KMSKS GN ++ ERY ALR LI
Sbjct: 525 KGQKMSKSKGNVIDPLEMVERYGADALRFALI 556
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 166 KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSV--LQLDSASDAVFYI 219
KMSK GNF + + + ALR+ +S + L + + LQ + +S+ V+YI
Sbjct: 285 KMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYI 340
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 213 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 254
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 213 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 254
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 213 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 254
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 213 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 254
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 213 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 254
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
+G T + +K+SKSLGN F + E + AL++FL+
Sbjct: 314 HGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
+G T + +K+SKSLGN F + E + AL++FL+
Sbjct: 314 HGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 157 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
+G T + +K+SKSLGN F + E + AL++FL+
Sbjct: 314 HGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 7 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 50
L PT + R+ D Q+ + I + ++V GD FF +E +P
Sbjct: 273 LSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNP 316
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 7 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 50
L PT + R+ D Q+ + I + ++V GD FF +E +P
Sbjct: 273 LSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNP 316
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 7 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 50
L PT + R+ D Q+ + I + ++V GD FF +E +P
Sbjct: 273 LSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNP 316
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 7 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 50
L PT + R+ D Q+ + I + ++V GD FF +E +P
Sbjct: 273 LSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNP 316
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 7 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 50
L PT + R+ D Q+ + I + ++V GD FF +E +P
Sbjct: 250 LSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNP 293
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 7 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 50
L PT + R+ D Q+ + I + ++V GD FF +E +P
Sbjct: 250 LSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNP 293
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 7 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 50
L PT + R+ D Q+ + I + ++V GD FF +E +P
Sbjct: 250 LSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVNP 293
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 6/175 (3%)
Query: 117 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNN-NEKMSKSLGNFF 175
LS D++ G D + I S A S + + +G V + +KMSKSLGN
Sbjct: 545 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 604
Query: 176 TIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE 235
Q+ ++ R ++ S Y + + S L SD I TL+ ++ F
Sbjct: 605 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNP 664
Query: 236 HGKT---ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 287
+ + + +N+LR EF A ++ L +Q+ FIN L+
Sbjct: 665 DTDSIPESELLEVDRYLLNRLR-EFTASTINNYENFDYLN-IYQEVQNFINVELS 717
>pdb|2LSG|A Chain A, Solution Structure Of The Mouse Rev1 C-Terminal Domain
Length = 104
Score = 28.1 bits (61), Expect = 8.7, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 327 YSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMG 386
+S+V LK+ ++ EED+LQ++ + KD K D + + R LM
Sbjct: 18 FSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKR----LMQQS 73
Query: 387 KETIW 391
E++W
Sbjct: 74 VESVW 78
>pdb|2NQC|A Chain A, Crystal Structure Of Ig-Like Domain 23 From Human Filamin
C
Length = 138
Score = 28.1 bits (61), Expect = 8.9, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 53 GRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAM 112
GR SG + + G+++ SR + + ++AG+P S +GPG G + +
Sbjct: 14 GRGSGSHMASMTGGQQMGRGSR--------VGEQSQAGDPGLVSAYGPGLEG---GTTGV 62
Query: 113 SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV 151
S+ ++ + + G + + +++ C C + +V
Sbjct: 63 SSEFIVNTLNAGSGALSVTI-DGPSKVQLDCRECPEGHV 100
>pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box
Complex From Pyrococcus Woesei
Length = 200
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 248 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLXXXXXXXXXLSLIESLRK 307
D +NK DE IL A++ L S ++ SL+E ++
Sbjct: 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIA---SLLEGEKR 166
Query: 308 IENEVKEVLRILGLLPPGAYSEVLQQLKDK 337
+ EV EV R+ + Y E++++LK K
Sbjct: 167 TQREVAEVARVTEVTVRNRYKELVEKLKIK 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,496,730
Number of Sequences: 62578
Number of extensions: 453666
Number of successful extensions: 1262
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1227
Number of HSP's gapped (non-prelim): 33
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)