BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014658
(421 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
GN=cysS PE=3 SV=1
Length = 493
Score = 346 bits (887), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 189/398 (47%), Positives = 247/398 (62%), Gaps = 15/398 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L PT +P+ +DHM I +I +I AY +GDV++AVE P+Y RLSG+ L
Sbjct: 101 MARLGLAKPTVEPKATDHMGGIISVIETLIAKGHAYESDGDVYYAVESFPSYLRLSGRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ AG RV VD RKRNP DFALWK +K GEPSWDSPWG GRPGWHIECSAMS YL
Sbjct: 161 EDMLAGARVEVDDRKRNPMDFALWKGSKPGEPSWDSPWGAGRPGWHIECSAMSMEYLGKT 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS AA V YWMHNG V N+EKMSKSLGNFFTIR++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEAANGCQFVRYWMHNGFVNINSEKMSKSLGNFFTIREV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS----PFQEH 236
E+Y P LR F++SAHYRSP+++S L+ A + IY L + A+ P Q
Sbjct: 281 LEQYDPETLRFFILSAHYRSPIDFSDQNLNDAQAGLERIYSCLAAVDGAMEGQDVPNQPV 340
Query: 237 GKTARINPAAEDCINKLR---DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293
+ A + PA + KL+ F M DD NT+ L G +A++ N + +
Sbjct: 341 -EGAPLPPAGAELHEKLQSLISRFREAMDDDFNTAQAL-GVLFEAVRATNRFMAESGDQT 398
Query: 294 PKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLI 353
P L+L+ +R++ E +VL + P A+ E ++Q K + E++ +++ QLI
Sbjct: 399 PA--TLALLGQVRRLFAETGDVLGLF-TSQPAAWLESIKQAKSDQM---EISPQEIEQLI 452
Query: 354 EERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 391
ERAAAR N+DF + D+IR L +KGI L+D + T W
Sbjct: 453 AERAAARTNRDFKRGDEIRDLLLQKGIQLLDSPQGTTW 490
>sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 /
DSM 17278 / SZ) GN=cysS PE=3 SV=1
Length = 487
Score = 335 bits (858), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 184/396 (46%), Positives = 241/396 (60%), Gaps = 15/396 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M L L PT +P+ +DH+E I +I ++I+N AY V+GDV+FAVE P Y +LSG+ L
Sbjct: 101 MDRLGMLRPTIEPKATDHIEDIISIIQRLIDNGHAYAVDGDVYFAVETFPAYLKLSGRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
++ AG RV VD RKRNP DFALWK +K GEP W+SPWG GRPGWHIECSAMS +L
Sbjct: 161 DDMLAGARVDVDERKRNPMDFALWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPS 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS A V YW+HNG V N+EKMSKSLGNFFTIR++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEGANGCQFVKYWLHNGFVNINSEKMSKSLGNFFTIREV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E + P LR F++ AHYRSPL+YS L A + IY+ L + AL E TA
Sbjct: 281 LELFDPETLRFFILQAHYRSPLDYSDQNLREAQAGLSRIYEALAALDQAL----EKPATA 336
Query: 241 RINPAA----EDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ 296
PA+ + + L F M DD NT+ L G D+++ +N L +
Sbjct: 337 IHLPASAAEFAEKVAGLLPRFREAMDDDFNTAQAL-GTLFDSIRTLNRLLA--EGGGSSS 393
Query: 297 QQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEER 356
+ +E LR E+ VL + + P S+ L + + + E++ E++ LI ER
Sbjct: 394 ASRADLEQLRAAVTEIGAVLGLFRIKP----SDWLAAREAEKARHLEISPEEIEGLIVER 449
Query: 357 AAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
AAARKNKDF +SD+IR L + I L+D + T W+
Sbjct: 450 AAARKNKDFKRSDEIRDYLLSRDIQLVDTPQGTAWK 485
>sp|Q3J8Y9|SYC_NITOC Cysteine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848) GN=cysS PE=3 SV=1
Length = 485
Score = 330 bits (847), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/403 (44%), Positives = 238/403 (59%), Gaps = 32/403 (7%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRL 60
A LQ LPP +PR ++ ME I M+ Q+++ AY E GD+++ V YG LSG+ L
Sbjct: 101 ASLQILPPDREPRATESMEAILAMVRQLLDQGYAYQGENGDIYYDVSHFEGYGALSGRHL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ RAGERV V+ K +P DF LWKAAK+GEP+W+SPWGPGRPGWHIECSAMS L +
Sbjct: 161 EDLRAGERVQVNEAKTDPLDFVLWKAAKSGEPAWESPWGPGRPGWHIECSAMSIQELGTH 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL FPHHENEIAQS AA V+YWMHNG V N+EKMSKSLGNFFT+R++
Sbjct: 221 FDIHGGGQDLQFPHHENEIAQSEAATGGKFVNYWMHNGFVRLNDEKMSKSLGNFFTVREV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E YHP LR+F++S+HYRSPLNY+ QLD+A A+ +Y L+ G +
Sbjct: 281 LEHYHPEVLRYFILSSHYRSPLNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLSW 340
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
+ + + R+ M DD NT L L + +LN ++ ++ S
Sbjct: 341 EFTDGGDPFVLRFREA----MDDDFNTPEALA-----LLNEVRHALNRAREAGDTEKGQS 391
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDK-----------ALKRAELTEEDV 349
L LR + ILGLL E Q L+D A + A L+ + +
Sbjct: 392 LAVLLRSLGG-------ILGLLA----HEPEQFLRDSRQVAAIPDTAAAGEEAVLSHDGI 440
Query: 350 LQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
QL+ +R ARKNKD++++D+IR L +GI L D T+WR
Sbjct: 441 EQLVAQRTVARKNKDWAEADRIRGILKDQGITLEDTAAGTLWR 483
>sp|Q6AJ23|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=cysS PE=3 SV=1
Length = 489
Score = 329 bits (844), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/396 (43%), Positives = 246/396 (62%), Gaps = 18/396 (4%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M +L L P +P+ ++H++++ D+I ++++ D AY GDV++ V P YG+LSG+ +
Sbjct: 101 MDNLGTLRPDIEPKATEHIQEMIDIIQELVDKDMAYPSAGDVYYVVNSFPEYGKLSGRNI 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ +AG R++++ +KRNP DFALWKA+K GEPSW+SPWGPGRPGWHIECSAMS YL
Sbjct: 161 EDMQAGARISINEQKRNPMDFALWKASKPGEPSWESPWGPGRPGWHIECSAMSRKYLGEN 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DLIFPHHENEIAQS A + W+H+G VT +EKMSKSLGNF TI+ I
Sbjct: 221 FDIHGGGKDLIFPHHENEIAQSEGANGKPFANTWIHHGFVTIKDEKMSKSLGNFLTIKDI 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+ YHP LR F+ S YR+PL++S + + A A+ +Y+ L D Q+ K
Sbjct: 281 LDHYHPEILRAFIFSTQYRNPLDFSEIAMQDAETALVRLYECLHD-------IQQLAKGD 333
Query: 241 RINPA---AEDC--INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK 295
PA A+D +N + F M++D NT+ L G DA+K IN + L P
Sbjct: 334 PTLPALISAKDAAKLNSIETRFQEAMNNDFNTALAL-GVLYDAIKIINRAQRALTDT-PS 391
Query: 296 QQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE 355
+ +++ + ++++ I+GLL A + LQQ K+K L ++TE ++ I++
Sbjct: 392 ALDVKMLKGSMTL---IQKLAGIVGLLQEDA-NLFLQQRKEKMLSGIDITEAEIESYIQQ 447
Query: 356 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 391
R AR NKD+++SD+IR L KGI L D T W
Sbjct: 448 RLDARANKDWARSDEIRDILLEKGITLKDGADGTGW 483
>sp|Q31H54|SYC_THICR Cysteine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=cysS PE=3 SV=1
Length = 456
Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 177/390 (45%), Positives = 239/390 (61%), Gaps = 40/390 (10%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L L P +P+ +++M++I+ MI+ +I D AY E GDV+F V+ +YGRLSG+ +E
Sbjct: 104 LNVLRPDMEPKATEYMDEIETMISTLIEKDFAYPAENGDVYFHVKADDDYGRLSGKNIEE 163
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+G RV ++S K++P DF LWKA+K EP+W SPWG GRPGWHIECSAMS L + FD
Sbjct: 164 LDSGSRVEINSVKKDPLDFVLWKASKENEPAWQSPWGDGRPGWHIECSAMSTKCLGNHFD 223
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG+DL FPHHENEIAQS A + V+ WMH G V ++EKMSKSLGNFFTIR++ +
Sbjct: 224 IHGGGLDLSFPHHENEIAQSECATGEHYVNSWMHCGFVRIDDEKMSKSLGNFFTIREVLK 283
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
+YHP +R+FL+++HYRSP+NYS LD A +V +Y L+ L P +
Sbjct: 284 QYHPEVIRYFLLASHYRSPVNYSEENLDVAKASVGRLYSALE-----LVPADQ------- 331
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
AE +KL EF A M+DD NT + F+ L K+ KQ+ L
Sbjct: 332 ---AEPAESKLEAEFMAAMNDDFNTPQAMAVLFE------------LAKEVNKQKSPGLA 376
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKN 362
L+K+ N++ GLL A S Q D ++LT+E + LI ERA ARK
Sbjct: 377 ALLKKLANQI-------GLLEQTAESFFKSQPSD-----SDLTDEMIEALIVERAEARKA 424
Query: 363 KDFSKSDQIRADLTRKGIALMDMGKETIWR 392
KDFS+SD+IR +L +GI L+D + T WR
Sbjct: 425 KDFSRSDEIRDELLAQGIELLDSAEGTSWR 454
>sp|B9LZV4|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3
SV=1
Length = 494
Score = 323 bits (829), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 175/392 (44%), Positives = 239/392 (60%), Gaps = 18/392 (4%)
Query: 9 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGER 68
PT QP+ ++H+++I ++ +I+ D AY GDV F VEK +Y +LSG+ LE+ +AG R
Sbjct: 109 PTCQPKATEHIDEIISLVQTLIDKDFAYQAGGDVNFCVEKFDSYLKLSGRTLEDMQAGAR 168
Query: 69 VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 128
+ VD RKR+P DFALWK AK GEP W+SPWG GRPGWHIECSAMS YL + FDIHGGG
Sbjct: 169 IEVDERKRHPMDFALWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGTTFDIHGGGK 228
Query: 129 DLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLA 188
DLIFPHHENEIAQS AA V+YW+HNG V N+EKMSKSLGNFFTI+++ +RY
Sbjct: 229 DLIFPHHENEIAQSEAATGKPFVNYWLHNGFVNINSEKMSKSLGNFFTIKEVLDRYDNEV 288
Query: 189 LRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT------ARI 242
LR FL+SAHYRSP+++S L A + IY+ L E L+ +G T + +
Sbjct: 289 LRFFLLSAHYRSPIDFSDQNLTEAEAGLERIYKALAAVEETLAA--GNGCTGAPVDASSL 346
Query: 243 NPAAEDCINK---LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 299
N A + +K + F M DD NT+ + F D ++ +N L+ L
Sbjct: 347 NEAEGELFDKTTSISARFGEAMDDDFNTALAMAHVF-DLVRCVNRVLSETAGASDNICSL 405
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAA 359
+ I+ EV ++ +LG+ S L++LK + ++ +++ +LI ER AA
Sbjct: 406 CTL-----IKAEVAKIAGVLGIFSSKPAS-FLERLKSRKAGNLDIAVDEIERLIAERTAA 459
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIW 391
RK KDF +SD+IR L K I L+D + T W
Sbjct: 460 RKAKDFKRSDEIRDQLAAKNIVLLDSQQGTTW 491
>sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 /
ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1
Length = 485
Score = 323 bits (827), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 238/394 (60%), Gaps = 13/394 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L PT+QP+ ++H+ ++ D+I+++I AY +GDV+F VEK Y +LS + L
Sbjct: 101 MAALGLDLPTHQPKATEHIAEMIDVISRLIEKGFAYAADGDVYFCVEKFDPYLKLSKRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
+ +AG R+ V +KR+P DFALWK +K GEP W+SPWG GRPGWHIECSAMS YL
Sbjct: 161 DEMQAGARIEVGEKKRHPMDFALWKGSKPGEPFWESPWGQGRPGWHIECSAMSMKYLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS AA YW+HNG V N+EKMSKSLGNFFTI+++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEAANGKPFAHYWIHNGFVNINSEKMSKSLGNFFTIKEV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E+Y LR FL+SAHYRSP+++S L A + IY TL + L+ E
Sbjct: 281 LEKYDAEVLRFFLLSAHYRSPIDFSDQNLREAEAGLERIYGTLAGIDENLTKGAEGTAEE 340
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
AE + + F M DD NT+ L F + S+ +L + + +
Sbjct: 341 TDRELAEKAVT-FPERFREAMDDDFNTAQALGFVFD----LVRSANRVLGEGKGGGSNRA 395
Query: 301 LIESLRKIENEVKEVLRILGLLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
L+ R + +++V +LG+ P A++E +LK++ +T E++ +LI ER A
Sbjct: 396 LLAEAR---DRIRKVGAVLGIFTSEPRAFAE---RLKNRKAAELPITAEEIERLIAERIA 449
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
AR N+DF ++D+IR L KGI L+D + T W+
Sbjct: 450 ARANRDFKRADEIRDSLAAKGIMLLDSPQGTTWK 483
>sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4)
GN=cysS PE=3 SV=1
Length = 494
Score = 322 bits (826), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 174/398 (43%), Positives = 241/398 (60%), Gaps = 14/398 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L L PT QP+ ++H+ +I ++ +I+ AY + GDV F VEK Y +LS + L
Sbjct: 101 MAQLGLLLPTSQPKATEHIPEIITLVQTLIDKGFAYQMGGDVNFCVEKFDPYLKLSKRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ +AG R+ VD RKR+P DF LWK AK GEP W+SPWG GRPGWHIECSAMS YL
Sbjct: 161 EDMQAGARIEVDERKRHPMDFVLWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS AA V YW+HNG V N+EKMSKSLGNFFTI+++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG--- 237
++Y LR FL+SAHYRSPL++S L A + IY+ L + L+ G
Sbjct: 281 LDKYDSEVLRFFLLSAHYRSPLDFSDQNLTEAETGMERIYKALVAIDETLASNPATGGEE 340
Query: 238 -KTARINPAAEDCINK---LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293
+ + A + +K L F M DD NT+ + G D ++ +N L+ +
Sbjct: 341 IDASSLGEAERELFDKSGSLPLRFREAMDDDFNTA-LAMGHIFDLVRCVNRVLS-----E 394
Query: 294 PKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLI 353
K++ +L +++ + ++ +LG+ S +L +LKD+ +++ E++ +LI
Sbjct: 395 AKERSNTLSALCAQVKANIGKIADVLGIFTSEPAS-LLTRLKDRKASELDISVEEIERLI 453
Query: 354 EERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 391
ERAAARK KDF +SD+IR L K I L+D + T W
Sbjct: 454 TERAAARKAKDFKRSDEIRDFLLGKNIVLLDSAQGTSW 491
>sp|B8GNT5|SYC_THISH Cysteine--tRNA ligase OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=cysS PE=3 SV=1
Length = 460
Score = 321 bits (822), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 174/390 (44%), Positives = 223/390 (57%), Gaps = 35/390 (8%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L LPP+ +PR ++H++ + MI ++ AY + GDV++AV K YGRLSG+RLE+
Sbjct: 103 LGVLPPSAEPRATEHIDGMLAMIGTLVERGYAYAGDNGDVYYAVAKFEPYGRLSGKRLED 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
RAGERVA D KR+P DF LWKAAK GEP+WDSPWGPGRPGWHIECSAMS HYL + FD
Sbjct: 163 LRAGERVAPDEAKRDPLDFVLWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTHYLGNHFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG DL FPHHENEIAQS AA + V+YWMHNG V N EKMSKSLGNFFT+R++
Sbjct: 223 IHGGGQDLQFPHHENEIAQSEAATCEHFVNYWMHNGFVRVNEEKMSKSLGNFFTVREVLA 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
RY +R+F++S+HYRSPLNYS LD+A + +Y L+ + +
Sbjct: 283 RYPAEVVRYFILSSHYRSPLNYSDEPLDAARAGLTRLYTALRGVQA-------------V 329
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
+PA + R F A M DD NT + F I LN L+ + P
Sbjct: 330 DPAGQG--EGYRRRFQAAMDDDFNTPVAMAVLFD-----IARELNRLRDEDPAGAAPLAG 382
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKN 362
L G + +L E + LI +R AARK
Sbjct: 383 LLRELGGMLGLLAGDPEAFLKGG--------------EAGDLDEAAIEALIAQRLAARKA 428
Query: 363 KDFSKSDQIRADLTRKGIALMDMGKETIWR 392
KDF+++D+IR +L +G+ L D T WR
Sbjct: 429 KDFAEADRIRDELAGQGVVLEDGPGGTTWR 458
>sp|Q747A2|SYC_GEOSL Cysteine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=cysS PE=3 SV=1
Length = 481
Score = 319 bits (818), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 234/394 (59%), Gaps = 17/394 (4%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L PTYQP+ ++H+ ++ +I +++ AY +GDV+F+VE Y +LS + L
Sbjct: 101 MAALGLDLPTYQPKATEHIAEMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E +AG R+ V +KR+P DFALWK +K GEP WDSPWG GRPGWHIECSAMS YL
Sbjct: 161 EEMQAGARIEVGEKKRHPMDFALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS AA YW+HNG V N EKMSKSLGNFFTI+++
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E Y LR FL+SAHYRSP+++S L A+ + IY L + A++ +
Sbjct: 281 LESYDAEVLRFFLLSAHYRSPIDFSDQNLKEAAAGLERIYNALAGIDEAVAA--DGTGAG 338
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
RI+ + L F M DD NT+ L F D ++ +N L + +
Sbjct: 339 RIDEELAEKAAGLPTRFREAMDDDFNTAQALGYVF-DLVRAVNRVL------AEGEIDRA 391
Query: 301 LIESLRKIENEVKEVLRILGLLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
++ S R+ + V +LGL PGA+ E L+ K AL + ++ +LIEER A
Sbjct: 392 VLASARE---AIDRVGAVLGLFTSEPGAFVERLKSRKAAALP---IEAAEIERLIEERNA 445
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
ARK +DF ++D+IR L +GI L+D + T W+
Sbjct: 446 ARKARDFRRADEIRDTLAAQGILLLDSAQGTTWK 479
>sp|A4J0Y9|SYC_DESRM Cysteine--tRNA ligase OS=Desulfotomaculum reducens (strain MI-1)
GN=cysS PE=3 SV=1
Length = 486
Score = 318 bits (814), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 172/389 (44%), Positives = 233/389 (59%), Gaps = 7/389 (1%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENN 63
L + P+VS+H+E+I D+I ++ + AYVV+GDV+FAV YG+LSG+ LE+
Sbjct: 102 LNVMRADTHPKVSEHIEEIIDLIKRLEDQGHAYVVDGDVYFAVRSFAEYGKLSGRSLEDM 161
Query: 64 RAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDI 123
+AG RV VD RK++P DFALWKAAK GEPSWDSPWG GRPGWHIECSAM+ YL + FDI
Sbjct: 162 QAGARVEVDPRKKDPMDFALWKAAKPGEPSWDSPWGSGRPGWHIECSAMAEKYLGNGFDI 221
Query: 124 HGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER 183
HGGG DLIFPHHENEIAQS AAC+ YWMHNG +T N EKMSKSLGNFF +R+I +
Sbjct: 222 HGGGFDLIFPHHENEIAQSEAACKAPFARYWMHNGFITINQEKMSKSLGNFFLVREILAK 281
Query: 184 YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARIN 243
+ P +R +L+S HYRSPL++ +L + + I L+ A+ G+ +
Sbjct: 282 FPPDVVRWYLLSTHYRSPLDFDDEKLVMSGKGLERIKTALRLLYEAMDLPVYEGEDIQGA 341
Query: 244 PAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIE 303
E+ + ++R EF M DD NT+ + F D K +N + L K L + +
Sbjct: 342 ENFEETLQRIRLEFEKAMDDDFNTA-LAISYFFDLAKEVNIYVGKLNSK----VTLEMRK 396
Query: 304 SLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNK 363
L + +K+ R+LG+L + L L + A LTE V +I+ R AR K
Sbjct: 397 ILDQAHTLIKDFNRVLGILKEDKMTGKL--LIEMAGADDTLTEGLVQLIIKIRQEARSKK 454
Query: 364 DFSKSDQIRADLTRKGIALMDMGKETIWR 392
D+S +D IR L G+ L D + W+
Sbjct: 455 DWSTADAIRDGLKELGVVLEDTPQGVRWK 483
>sp|A0LIR9|SYC_SYNFM Cysteine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=cysS PE=3 SV=1
Length = 493
Score = 317 bits (811), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/399 (43%), Positives = 238/399 (59%), Gaps = 15/399 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M L L P +P ++++ + ++I +++ AY DVFF +EK P YG+LSG+++
Sbjct: 101 MDALGVLRPDLEPLATENVPGMIEIIRVLMDKGIAYQAGADVFFEIEKFPGYGKLSGRQI 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ AG RV VD+RKRNP DF LWK +K GEPSWDSPWGPGRPGWHIECSAM + +L
Sbjct: 161 EDMLAGARVEVDARKRNPLDFVLWKGSKPGEPSWDSPWGPGRPGWHIECSAMGSRFLGKT 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DLIFPHHENEIAQS AA V YW+HNG V NNEKMSKSLGNF TIR +
Sbjct: 221 FDIHGGGKDLIFPHHENEIAQSEAAFGMPFVRYWLHNGFVNINNEKMSKSLGNFLTIRDV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS-----PFQE 235
++ HP +R F++S HYRSP+++S + A + +Y TL + + FQE
Sbjct: 281 LQKVHPETVRFFVLSKHYRSPVDFSDETIGEAEKGLERLYGTLGAVKERAAAGVEEAFQE 340
Query: 236 HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK 295
+ +P D I L F M +D NT+ L F + + L+ +KQ K
Sbjct: 341 KALRGQ-DPELFDQIAALSGAFREAMDNDFNTAQALGNLFS-LQRHLQRFLDKFGRKQLK 398
Query: 296 QQQLSLIESLRKIENEVKEVLRILGLLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLI 353
+L R + +++ +LGLL P A+ + LK +K LTE +V + I
Sbjct: 399 GPASALA---RAGADAIRDHALVLGLLTREPEAFQAEQRSLK---IKSTGLTEAEVERCI 452
Query: 354 EERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
E R AR++K+F+++D++R ++ +KGI L D T WR
Sbjct: 453 ELRRQARQDKNFAEADRLREEIEKKGIQLEDSPAGTRWR 491
>sp|Q3A8C9|SYC_PELCD Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 /
Gra Bd 1) GN=cysS PE=3 SV=1
Length = 481
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 174/399 (43%), Positives = 237/399 (59%), Gaps = 27/399 (6%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M L PT QP+ + H++ I +++ ++I+ AY +GDV+F+VE P+Y +LS + +
Sbjct: 101 MNRLGLAEPTIQPKATCHIDHIVNLVQRLIDRGIAYESQGDVYFSVEDFPSYLKLSKRNM 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
+ R+G R+ +KRNP DFALWKAAK GEPSW+SPWGPGRPGWHIECSAMS YL
Sbjct: 161 DEMRSGARITPGEQKRNPMDFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSMEYLGES 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL+FPHHENEIAQS A V YW+HNG V N EKMSKSLGNFFTIR I
Sbjct: 221 FDIHGGGKDLVFPHHENEIAQSEGATGKPFVKYWLHNGFVNVNQEKMSKSLGNFFTIRDI 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+ Y P LR F+++AHYRSP+++S Q LQD + LS F E A
Sbjct: 281 LQTYDPEVLRFFILTAHYRSPIDFSD--------------QNLQDARLGLSRFYEGLHAA 326
Query: 241 RINPAA-------EDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293
AA + L + F M DD NT+ + G DA++ IN L K +
Sbjct: 327 SEVLAACPPGDVTSEAGATLENVFREAMDDDFNTAAAI-GHLFDAVRTIN-RLITEKGFR 384
Query: 294 PKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLI 353
+++++ + +L ++ VL + + P A+ L+Q+ L TE D+ I
Sbjct: 385 KNREKVAQVRALYDALLKLGGVLGLF-VSDPAAW---LKQMNLAMLATTGYTESDIEDFI 440
Query: 354 EERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
+R ARKNKDF+++D+IR +L KGI L+D + T W+
Sbjct: 441 RQRQEARKNKDFARADEIRDELAAKGIQLLDGPQGTAWK 479
>sp|Q0A7N3|SYC_ALHEH Cysteine--tRNA ligase OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=cysS PE=3 SV=2
Length = 462
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 172/393 (43%), Positives = 227/393 (57%), Gaps = 39/393 (9%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L LPP ++PR + H++ I MI +++ AYV + GDV+FAV P YG+LSG+R E+
Sbjct: 103 LGVLPPDHEPRATGHIDDIIAMIERLVERGHAYVADDGDVYFAVSSYPEYGKLSGERQED 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
RAG RV VD KR+P DFALWKAA+ GEP+W SPWG GRPGWHIECSAMS L FD
Sbjct: 163 LRAGARVEVDEGKRDPVDFALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVLGDHFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG+DL FPHHENEIAQS A V+YWMHNGHV N+EKM+KSLGNFFT+R++
Sbjct: 223 IHGGGLDLKFPHHENEIAQSECATGHPFVNYWMHNGHVRINDEKMAKSLGNFFTVREVLS 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
+ A+R FL+S+HYRSPLNYS+ L A A+ +Y L+ A
Sbjct: 283 EHRAEAVRLFLLSSHYRSPLNYSLDGLRQAQGALERLYLALRGLPEA------------- 329
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
P E R FHA M DD NT L F+ + +N L++ +
Sbjct: 330 -PVPEADPQGFRARFHAAMDDDFNTPEALAVLFE-----LAREVNRLRQGDDDAGAAAPG 383
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELT---EEDVLQLIEERAAA 359
LR + +LGL LQ ++ L+ + + ++ L+ R A
Sbjct: 384 ALLRVLGG-------VLGL---------LQDDPERFLRGGDAGGDEDAEIDALVARRTEA 427
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
RKN+DF+++D+IR +L +GI L D + T WR
Sbjct: 428 RKNRDFAEADRIRDELAERGIILEDGPQGTTWR 460
>sp|C6E7P0|SYC_GEOSM Cysteine--tRNA ligase OS=Geobacter sp. (strain M21) GN=cysS PE=3
SV=1
Length = 480
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 172/394 (43%), Positives = 233/394 (59%), Gaps = 18/394 (4%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L PT+QP+ ++H+ +I +++ ++I+ AY DVF+ V++ Y +LS + L
Sbjct: 101 MARLMLQLPTFQPKATEHIPEIINLVQKLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ +AG R+ VD RK +P DFALWK AK GEP W+SPWG GRPGWHIECSAMS +L
Sbjct: 161 EDMQAGARIDVDERKEHPMDFALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
DIHGGG DLIFPHHENEIAQS AA V YW+HNG V N+EKMSKSLGNFFTI++I
Sbjct: 221 LDIHGGGKDLIFPHHENEIAQSEAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEI 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E Y LR FL+SAHYRSP+++S L A + IY+ L + L+ H
Sbjct: 281 LESYDAEVLRFFLLSAHYRSPIDFSDQNLKEAELGLERIYKALAGIDERLAS-GAHTPAD 339
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
N + + F M DD NT+ L G D ++ IN L
Sbjct: 340 ADNTEFAEKVAGFAGRFGDAMDDDFNTALAL-GHLFDLVRVINREL--------PTASTG 390
Query: 301 LIESLRKIENEVKEVLRILGLLP--PGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
L+E K++ EV ++ +LG+ P A+ LQ++KD+ E++ E++ LI ERA
Sbjct: 391 LLE---KVKAEVAKMAAVLGICDSVPAAF---LQRMKDRKTSDMEMSAEEIETLIAERAE 444
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
ARK K+F + D+IR L K I L+D + T W+
Sbjct: 445 ARKAKNFKRGDEIRDLLLEKNIVLLDSAQGTTWK 478
>sp|A5D5M0|SYC_PELTS Cysteine--tRNA ligase OS=Pelotomaculum thermopropionicum (strain
DSM 13744 / JCM 10971 / SI) GN=cysS PE=3 SV=1
Length = 484
Score = 314 bits (804), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 174/381 (45%), Positives = 228/381 (59%), Gaps = 9/381 (2%)
Query: 12 QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAV 71
P VS+H+ I M+ +++ AYVV+G+V+F V K YG+LSG+ LE+ +AG RV V
Sbjct: 110 HPLVSEHIPDIIKMVDELVKKGAAYVVDGNVYFEVRKFAGYGKLSGRTLEDMQAGARVEV 169
Query: 72 DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 131
D RKR+P DFALWKAAK GEP WDSPWGPGRPGWHIECSAMS YL + FDIHGGG DLI
Sbjct: 170 DPRKRDPLDFALWKAAKPGEPCWDSPWGPGRPGWHIECSAMSLKYLGTNFDIHGGGYDLI 229
Query: 132 FPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRH 191
FPHHENEIAQS AA V YWMHNG +T N EKMSKSLGNFF +R I ++ P +R
Sbjct: 230 FPHHENEIAQSEAATGQPFVRYWMHNGFITVNEEKMSKSLGNFFLVRDILAKFPPELVRF 289
Query: 192 FLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCIN 251
FL+S HYRSPL++ ++ +A + I +L+ AL G A + D +
Sbjct: 290 FLLSTHYRSPLDFDGEKMAAAGRGLERIKTSLRLLYEALERPVSEGVQA---VCSRDPFD 346
Query: 252 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENE 311
++R F A M DD NT+ + GA D + N+++ Q + L +L + NE
Sbjct: 347 EIRASFEAAMDDDFNTA-LAIGAVFDLAREANTAVQRTGPAVSGQDRQILQYAL-DLFNE 404
Query: 312 VKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQI 371
EVL I + GA +L + A + L E + ++E R ARK KD+S +D+I
Sbjct: 405 FNEVLGIFKV--DGASGRLL--IDGAAGDDSGLVEGLINLILEVRQEARKRKDWSTADRI 460
Query: 372 RADLTRKGIALMDMGKETIWR 392
R L GI L D + W+
Sbjct: 461 RDGLKELGILLEDTPQGVRWK 481
>sp|B5YID4|SYC_THEYD Cysteine--tRNA ligase OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=cysS PE=3 SV=1
Length = 487
Score = 313 bits (801), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/385 (42%), Positives = 229/385 (59%), Gaps = 15/385 (3%)
Query: 12 QPRVSDHMEQIKDMITQIINNDCAYVVE----GDVFFAVEKSPNYGRLSGQRLENNRAGE 67
+P+ ++H+ ++ ++I +IN AY +E V+F+VEK P YG+LS ++++ +G
Sbjct: 110 EPKATEHINEMIEIIQTLINKGYAYEIEEGQAKSVYFSVEKFPQYGKLSKKKIDELISGA 169
Query: 68 RVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 127
RV VD RK++P DFALWKA+K GEP WDSPWG GRPGWHIECSAMS YL FDIHGGG
Sbjct: 170 RVEVDERKKSPLDFALWKASKPGEPWWDSPWGKGRPGWHIECSAMSIKYLGETFDIHGGG 229
Query: 128 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL 187
DLIFPHHENEIAQS A YW+HNG VT N EKMSKSLGN IR + + Y
Sbjct: 230 ADLIFPHHENEIAQSEAFTGKPFAKYWIHNGFVTINKEKMSKSLGNVLNIRDLLDIYDAE 289
Query: 188 ALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAE 247
ALR FL+S+HYRSP+ ++ + A V +Y T+ E + + K++ +
Sbjct: 290 ALRLFLLSSHYRSPIEFAHEYIKEAEATVDRVYSTIMRIE-DFEKIEINDKSSIEFDKVK 348
Query: 248 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRK 307
+ L+ EF M DD NT+ L F+ FI + KK + +++ + + ++
Sbjct: 349 AMLENLKPEFEKAMDDDFNTAKALGILFE----FIKEINRFMDKKPSQNKEIDFLVTAKR 404
Query: 308 IENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSK 367
E+ VL + P Y ++L+ +K+ + EE++ +LI+ER ARKNKD+ K
Sbjct: 405 AIKEIGSVLNLFQRQPVDWYRDLLK------VKKIAIKEEEINRLIKERTEARKNKDWKK 458
Query: 368 SDQIRADLTRKGIALMDMGKETIWR 392
+D IR L KGI L D TIW+
Sbjct: 459 ADSIREQLLSKGIILEDKPDRTIWK 483
>sp|Q2SK40|SYC_HAHCH Cysteine--tRNA ligase OS=Hahella chejuensis (strain KCTC 2396)
GN=cysS PE=3 SV=1
Length = 467
Score = 313 bits (801), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/390 (44%), Positives = 239/390 (61%), Gaps = 28/390 (7%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLEN 62
L L PT +PR + H+++I MI ++++ AY GDV+++VE+ +YG+LS Q+L+
Sbjct: 103 LGVLSPTSEPRATGHIDEIIAMIQRLMDKGYAYHASNGDVYYSVEQFADYGKLSKQKLDE 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
RAG R+ VD+ KR+PADF LWKAAK GE SWDSPWG GRPGWHIECSAMS L FD
Sbjct: 163 IRAGARIEVDAEKRSPADFVLWKAAKPGELSWDSPWGEGRPGWHIECSAMSTRCLGDTFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG DL FPHHENEIAQS AA V+YWMH G V N EKMSKSLGNFFTIR+I +
Sbjct: 223 IHGGGPDLKFPHHENEIAQSEAATGCKYVNYWMHAGAVRVNKEKMSKSLGNFFTIREILD 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
+Y +R+FL S+HYRS ++YS + L+ A + +Y ++++ + E G +
Sbjct: 283 KYPAEVVRYFLASSHYRSAIDYSDVALEEARSGLERLYNSIREL------YGELGAVSMD 336
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
P + + R+ FH M DD NTS + F D K +N + KK+ + + LSL
Sbjct: 337 EP----LVGEYRERFHQAMDDDFNTSSAVAVLF-DMAKAVN-----VAKKEDRTRALSLA 386
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKN 362
+ + ++ +LGLL A E L Q + + + L+ ++ I +R AAR N
Sbjct: 387 KGM-------VDLAEVLGLLQ--ADPESLMQGEGEEV--GGLSVAEIEDFIAQRNAARAN 435
Query: 363 KDFSKSDQIRADLTRKGIALMDMGKETIWR 392
KDF++SD+IR L KG+ L D + T W+
Sbjct: 436 KDFAESDRIRDLLKEKGVLLNDSREGTSWQ 465
>sp|Q82Y45|SYC_NITEU Cysteine--tRNA ligase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=cysS PE=3 SV=1
Length = 465
Score = 312 bits (799), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/397 (42%), Positives = 232/397 (58%), Gaps = 44/397 (11%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L + P+++PR +++++ + MI ++N + AYV GDVF+ V + P YG+LSG+ L++
Sbjct: 103 LGVISPSFEPRATEYVDSMIAMIESLLNRELAYVASNGDVFYDVRRFPGYGKLSGKSLDD 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
RAGERV +D+ KR+P DF LWKAAK EPSWDSPWG GRPGWHIECSAMS HYL +FD
Sbjct: 163 LRAGERVEIDTNKRDPLDFVLWKAAKPDEPSWDSPWGKGRPGWHIECSAMSEHYLGDQFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG DL FPHHENEIAQS S+V+YWMHNG V +NEKMSKSLGNFFT+R++
Sbjct: 223 IHGGGQDLQFPHHENEIAQSEGVHGHSHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVLT 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTL------QDCEVALSPFQEH 236
RY P +R F++ AHYRSPLNYS L+ A A+ +Y L QD EVA
Sbjct: 283 RYQPEVVRFFIVRAHYRSPLNYSDAHLNDARSALERLYTVLKNHAPSQDSEVA------- 335
Query: 237 GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ 296
TA I+ E+ + R F + M+DD NT + F A
Sbjct: 336 --TAVID--WENNVYARR--FMSAMNDDFNTPEAVAVLFDLA------------------ 371
Query: 297 QQLSLIESLRKIENEVKEVLRIL-GLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEE 355
E+ R ++ +L+ L G+L L+ + + E++ +I++
Sbjct: 372 -----SEANRTGDSHYASLLKALGGVLGLLQQPPQQYLQYPAHLQDGQYSVEEIENMIQQ 426
Query: 356 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
R ARK ++F+++D +R L GI L D + T WR
Sbjct: 427 RLQARKERNFAQADTLRQQLAEAGIILEDSPQGTTWR 463
>sp|Q2Y7U5|SYC_NITMU Cysteine--tRNA ligase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=cysS PE=3 SV=1
Length = 464
Score = 311 bits (798), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 174/397 (43%), Positives = 228/397 (57%), Gaps = 47/397 (11%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRL 60
A L PP+++PR + H+E + MI +++ AY GDV++AV + P YG+LSG+ L
Sbjct: 101 AALGVEPPSWEPRATRHVEDMIAMIQVLVDKKLAYPASNGDVYYAVHRFPGYGKLSGKSL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
+ RAGERV VD K +P DF LWKAAK GEP WDSPWGPGRPGWHIECSAM HYL
Sbjct: 161 DELRAGERVIVDPHKNDPLDFVLWKAAKPGEPQWDSPWGPGRPGWHIECSAMGEHYLGEH 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL FPHHENEIAQS A V+YWMHNG V N+EKMSKSLGNFFT+R+I
Sbjct: 221 FDIHGGGQDLQFPHHENEIAQSEGAHGHPFVNYWMHNGFVRVNDEKMSKSLGNFFTVREI 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+ P +R F++ AHYRSPLNY+ +QL+ A A+ +Y L+ EV
Sbjct: 281 LAHFQPEVVRFFILRAHYRSPLNYADMQLEDAGRALDRLYTALKGIEVH----------- 329
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
+ D + F M+DD NT L F + + +N K + P+ ++
Sbjct: 330 --DEVEIDWDDPYASRFREAMNDDFNTPEALAVLFD-----LATEVN--KTRLPR--DIA 378
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAE-----LTEEDVLQLIEE 355
L+++L +LGL LQQ K ++A+ E V QLI++
Sbjct: 379 LMKALGG----------VLGL---------LQQDPWKYFQQADSEDPAFAPEKVEQLIQQ 419
Query: 356 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
R AR NKD+ ++D+IR +L I L D T WR
Sbjct: 420 RLVARANKDYREADRIRKELMEANIILEDGPHGTTWR 456
>sp|Q60BG8|SYC_METCA Cysteine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=cysS PE=3 SV=1
Length = 465
Score = 311 bits (797), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 180/392 (45%), Positives = 227/392 (57%), Gaps = 34/392 (8%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYV-VEGDVFFAVEKSPNYGRLSGQRLEN 62
L LPP ++PR ++ ++ I MI +I AYV GDVF+AV PNYGRLSG+ L+
Sbjct: 103 LGVLPPDHEPRATESIDDILAMIGTLIERGHAYVGSNGDVFYAVASFPNYGRLSGKNLDE 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
RAGER+ VD KR+P DF LWK+AK GEP W SPWGPGRPGWHIECSAMS L + FD
Sbjct: 163 LRAGERIEVDEAKRDPLDFVLWKSAKPGEPFWASPWGPGRPGWHIECSAMSTRCLGAHFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG+DL FPHHENEIAQS A + V+YWMHNG V N EKMSKSLGNFFT+R+I
Sbjct: 223 IHGGGMDLQFPHHENEIAQSEGATGEHFVNYWMHNGFVRINEEKMSKSLGNFFTVREILA 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
RY P +R F++++HYRSPLNYS LD A+ A+ +Y L+ L P
Sbjct: 283 RYRPEVVRFFILNSHYRSPLNYSDENLDEAAAALSRLYTALRGLAPDL-PL--------- 332
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
P ED F M DD NT + F D + IN K + +L
Sbjct: 333 -PLGEDRDEGFSSRFADAMQDDFNTPEAIAVLF-DLAREINR-----HKAAEPAKAAALG 385
Query: 303 ESLRKIENEVKEVLRILGLL--PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 360
+L+ + N +LGLL P AY K A + L++ D+ I R AR
Sbjct: 386 ATLKSLGN-------VLGLLQTDPEAY------FKSDA-GGSGLSDADIETRIRARLEAR 431
Query: 361 KNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
K K++++SD+IR +L +GI L D T WR
Sbjct: 432 KAKNWAESDRIRDELKAQGIILEDSAAGTTWR 463
>sp|Q7NX82|SYC_CHRVO Cysteine--tRNA ligase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=cysS PE=3 SV=2
Length = 457
Score = 310 bits (795), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 175/394 (44%), Positives = 227/394 (57%), Gaps = 42/394 (10%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRL 60
A L LPPT++PR + H+ + MI Q+I N AY GDV++AV + YG+LSG+ L
Sbjct: 101 AALGLLPPTHEPRATHHVGGMVAMIEQLIANGKAYPAANGDVYYAVREFEGYGKLSGRTL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
+ RAGERV VD KR+P DF LWKAAK GEPSWDSPWG GRPGWHIECS MS H+L
Sbjct: 161 DKLRAGERVEVDPNKRDPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSVMSCHHLGEH 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL FPHHENEIAQS A V+YW+HNG + + EKMSKSLGNFFTIR +
Sbjct: 221 FDIHGGGEDLQFPHHENEIAQSEGAHGHQYVNYWLHNGFINVDGEKMSKSLGNFFTIRDV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE--HGK 238
+ + +R F++ +HYRSP+NY+ L+ A + +Y L+ E+ S + H
Sbjct: 281 LQHFDGEVIRFFIVRSHYRSPVNYTDSILNDAKHGLTRLYTALRGIELPTSDGIDWNHAY 340
Query: 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 298
AR F A M DD TS + F+ + +N K + P+ +
Sbjct: 341 AAR---------------FKAAMDDDFGTSEAVAVLFE-----LAGEVN--KSRDPQLAR 378
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
L +K++ +LGLL EV Q + EL+ E V LI+ R
Sbjct: 379 L------------LKDLGGVLGLLTRD--PEVFLQ---GGVGEGELSAEQVEALIQARKD 421
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
AR KD+++SD+IR +LT KGI L D TIWR
Sbjct: 422 ARAAKDWAESDRIRDELTAKGIVLEDGAGGTIWR 455
>sp|B5EEK6|SYC_GEOBB Cysteine--tRNA ligase OS=Geobacter bemidjiensis (strain Bem / ATCC
BAA-1014 / DSM 16622) GN=cysS PE=3 SV=1
Length = 480
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 173/400 (43%), Positives = 230/400 (57%), Gaps = 30/400 (7%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
MA L PT+QP+ ++H+ +I ++ +I+ AY DVF+ V++ Y +LS + L
Sbjct: 101 MARLMLQLPTFQPKATEHIPEIIALVQTLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ +AG R+ VD RK +P DFALWK AK GEP W+SPWG GRPGWHIECSAMS +L
Sbjct: 161 EDMQAGARIDVDERKEHPMDFALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
DIHGGG DLIFPHHENEIAQS AA V YW+HNG V N+EKMSKSLGNFFTI++I
Sbjct: 221 LDIHGGGKDLIFPHHENEIAQSEAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEI 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E Y LR FL+SAHYRSP+++S L A + IY+ AL+ E +
Sbjct: 281 LESYDAEVLRFFLLSAHYRSPIDFSDQNLKEAELGLERIYK-------ALAGIYERLASG 333
Query: 241 RINPAAEDC------INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 294
PA D + F M DD NT+ L G D ++ IN L
Sbjct: 334 ANTPAGADNAEFVEKVAGFAGRFGDAMDDDFNTALAL-GHLFDLVRVINREL-------- 384
Query: 295 KQQQLSLIESLRKIENEVKEVLRILGLLP--PGAYSEVLQQLKDKALKRAELTEEDVLQL 352
L+E + EV ++ +LG+ P A+ LQ++KD+ E++ E++ L
Sbjct: 385 PTASTGLLEQAKA---EVAKMAAVLGICDSVPAAF---LQRMKDRKTSDIEMSAEEIEAL 438
Query: 353 IEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
I ERA ARK K+F + D+IR L K I L+D + T W+
Sbjct: 439 IAERAEARKAKNFKRGDEIRDLLLEKNIVLLDSAQGTTWK 478
>sp|Q8R7T3|SYC_THETN Cysteine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=cysS PE=3
SV=1
Length = 467
Score = 305 bits (782), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 164/386 (42%), Positives = 225/386 (58%), Gaps = 32/386 (8%)
Query: 10 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERV 69
T PR ++H++ I + I +I+ AYVV+G+V+F K +YG+LS + ++ AG RV
Sbjct: 108 TVHPRATEHIDDIIEFIKILIDKGYAYVVDGNVYFETAKFKDYGKLSHKNIDELMAGARV 167
Query: 70 AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 129
+D +K+NP DFALWKA K GEP+WDSPWG GRPGWHIECS MS YL DIH GG D
Sbjct: 168 EIDEKKKNPLDFALWKAQKPGEPAWDSPWGKGRPGWHIECSVMSTKYLGKTLDIHAGGPD 227
Query: 130 LIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLAL 189
LIFPHHENEIAQS AA YWMH G++ NNEKMSKS GNFFT+R++TE+Y P L
Sbjct: 228 LIFPHHENEIAQSEAAYDQPFSKYWMHIGYLNVNNEKMSKSKGNFFTVRELTEKYDPEVL 287
Query: 190 RHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDC 249
R F++ AHYRSP+N+S+ LD A A Y+ L + V L K ++ +D
Sbjct: 288 RLFMLMAHYRSPINFSLDLLDQAKSA----YERLSNAVVNLKHLANITKDRELSDEEKDL 343
Query: 250 INKL---RDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLR 306
I K + +F M DD NT+ ++ F+ A K N++L+ K+ + L + L
Sbjct: 344 IVKFDEYKKQFEEAMDDDFNTADAISVLFEMA-KTANANLSGNSSKKLVEYILEMFLKLS 402
Query: 307 KIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFS 366
+LGL A +E+ +E++L+LIEER ARK K++
Sbjct: 403 D----------VLGLSYKNAETEI--------------EDEEILRLIEERQKARKEKNWK 438
Query: 367 KSDQIRADLTRKGIALMDMGKETIWR 392
+D+IR L +GI L D + W+
Sbjct: 439 LADEIRDKLKERGIILEDTPEGVRWK 464
>sp|Q1H417|SYC_METFK Cysteine--tRNA ligase OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=cysS PE=3 SV=1
Length = 455
Score = 304 bits (779), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 177/395 (44%), Positives = 231/395 (58%), Gaps = 46/395 (11%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRL 60
A L P +PR +D++ ++ MI +I AY + GDV++AV +YG+LSG+ L
Sbjct: 101 ARLGVWRPDLEPRATDYIHEMIAMIVALIEKHHAYAADNGDVYYAVSSFASYGKLSGKSL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ RAGERV VD+ KR+P DF LWKAAK GEPSWDSPWGPGRPGWHIECSAM A +L
Sbjct: 161 EDLRAGERVEVDAHKRDPMDFVLWKAAKPGEPSWDSPWGPGRPGWHIECSAMGARHLGPH 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL FPHHENEIAQS A + V+YWMHNG + ++EKMSKSLGNFFTIR++
Sbjct: 221 FDIHGGGQDLQFPHHENEIAQSEGAHGCTFVNYWMHNGFIRVDDEKMSKSLGNFFTIREV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
E+Y +R F++ AHYRSPLNYS LD A A+ +Y TL+ E+
Sbjct: 281 LEKYDAEVVRFFILRAHYRSPLNYSSHHLDDAKQALTRLYNTLRGRELPQLDIDWR---- 336
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
P AE F + DD NT F+ + S N + Q +
Sbjct: 337 --QPEAE--------RFKQALDDDFNTPEAFAVLFE-----LASEAN----RTGSAVQAA 377
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKR---AELTEEDVLQLIEERA 357
L+++L LGL LQ+ D+ LK A L+ +++ +LI ER
Sbjct: 378 LLKALAG----------QLGL---------LQRDPDEFLKGEAVAGLSPDEIERLIAERL 418
Query: 358 AARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
AARK K+F+++D+IR LT +GI L D + T WR
Sbjct: 419 AARKCKNFAEADRIRDALTAQGIILEDTPQGTSWR 453
>sp|B9MMM6|SYC_CALBD Cysteine--tRNA ligase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=cysS PE=3 SV=1
Length = 465
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/380 (42%), Positives = 227/380 (59%), Gaps = 28/380 (7%)
Query: 10 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERV 69
T PR ++ +E + +I ++I+ AYVV+GDV+F K YG+LS + +E AG RV
Sbjct: 108 TKNPRATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARV 167
Query: 70 AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 129
+ +K +P DFALWKA K GEP+W SPWG GRPGWHIECS M+ YL DIH GG D
Sbjct: 168 DPNEKKEDPLDFALWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQD 227
Query: 130 LIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLAL 189
LIFPHHENEIAQS AA +W+HNG+V NNEKMSKSLGNFFT+R+I E+YHP AL
Sbjct: 228 LIFPHHENEIAQSEAATGKPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIEKYHPEAL 287
Query: 190 RHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDC 249
R F++ AHYR PLN+S+ ++ A A+ IY ++ E + Q ++ + +
Sbjct: 288 RLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLI---QNAASSSENDDKLKAA 344
Query: 250 INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIE 309
I +L+ +F M DDLNT+ TG + ++ IN+ N K E+L +
Sbjct: 345 IEELKAKFIDAMEDDLNTAEA-TGYLFEMVREINTYANSCSK-----------ETLTFAK 392
Query: 310 NEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSD 369
+ +KE+ ILG+L + E E + +L+L+E+R ARK K+F+++D
Sbjct: 393 DTLKELCSILGILEQYSAKE-------------EAIPQQILELVEKRNQARKAKNFAEAD 439
Query: 370 QIRADLTRKGIALMDMGKET 389
+IR +L G ++D + T
Sbjct: 440 RIRDELKSLGYIVLDTPQGT 459
>sp|Q5QYP3|SYC_IDILO Cysteine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC BAA-735
/ DSM 15497 / L2-TR) GN=cysS PE=3 SV=1
Length = 459
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/390 (43%), Positives = 228/390 (58%), Gaps = 37/390 (9%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLEN 62
L + P +PRV+ HM++I MI ++I N AY GDV F V +YG+LS Q LE
Sbjct: 104 LNLVRPDIEPRVTSHMDEIILMIERLIENGNAYEAGNGDVLFDVSTFNDYGKLSRQDLEQ 163
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+AG RV VD+ K++P DF LWK+AK GEPSW SPWG GRPGWHIECSAM+ +L S FD
Sbjct: 164 LQAGSRVDVDAAKQDPLDFVLWKSAKPGEPSWSSPWGEGRPGWHIECSAMNKKHLGSTFD 223
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG DL FPHHENEIAQSC A Q V YWMH+G V +NEKMSKSLGNFFTIR + E
Sbjct: 224 IHGGGSDLSFPHHENEIAQSCCANQSEYVKYWMHSGMVQVDNEKMSKSLGNFFTIRSVLE 283
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
+Y +R+FL+S+HYRS LNY+ LD A A+ +Y L+D ++P
Sbjct: 284 QYDAETVRYFLLSSHYRSQLNYTQENLDQAHSALERLYTALRD----ITP---------- 329
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
A+E+ +K F M DDLN ++ F+ I +N ++ P
Sbjct: 330 QTASEELRSKYWQSFQQAMDDDLNAPEAMSVLFE-----IAREINRNRESAP-------- 376
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKN 362
++ ++ + + E+ ++GLL E LQ D K + LI +R AR++
Sbjct: 377 DTAAQLAHVLLELAEVMGLLQQSP-EEFLQGDDDDVAK--------IEALIAKRNQARED 427
Query: 363 KDFSKSDQIRADLTRKGIALMDMGKETIWR 392
KD++ +D+ R +LT GI L D + T WR
Sbjct: 428 KDWAAADEARDELTNMGIVLEDGAEGTRWR 457
>sp|Q0AJJ4|SYC_NITEC Cysteine--tRNA ligase OS=Nitrosomonas eutropha (strain C91) GN=cysS
PE=3 SV=1
Length = 467
Score = 302 bits (774), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 170/394 (43%), Positives = 233/394 (59%), Gaps = 32/394 (8%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRL 60
A L + P+++PR ++ +E + MI +++ AYV GDVF+ V + P YG+LSG+ L
Sbjct: 101 AALGIISPSFEPRATECIESMVTMIESLLSKGLAYVANNGDVFYDVRRFPGYGKLSGKSL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
++ RAGERV +D+ KR+P DF LWKAAK EPSWDSPWG GRPGWHIECSAMS HYL +
Sbjct: 161 DDLRAGERVEIDTNKRDPLDFVLWKAAKPDEPSWDSPWGKGRPGWHIECSAMSGHYLGER 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DL FPHHENEIAQS +V+YWMHNG V +NEKMSKSLGNFFT+R++
Sbjct: 221 FDIHGGGQDLQFPHHENEIAQSEGVHGHPHVNYWMHNGFVRVDNEKMSKSLGNFFTVREV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
RY P +R F++ AHYRSPLNYS L+ A +A+ +Y L++ + + + A
Sbjct: 281 LARYQPEVVRFFIVRAHYRSPLNYSDAHLNDARNALERLYTALKNHAPSQA------QAA 334
Query: 241 RINPAAEDCINK-LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 299
A D +N F A M+DD NT + F A + +
Sbjct: 335 EEATATIDWVNDGYAQRFMAAMNDDFNTPEAVAVLFDLASE---------ANRTGNSHYA 385
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAE-LTEEDVLQLIEERAA 358
SL+++L ILGLL Q L+ A + + + E++ ++I++R
Sbjct: 386 SLLKALGG----------ILGLLQ----QSPRQYLQHPAHPQNDHHSIEEIERMIQQRLQ 431
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
ARK K+F+++D +R L GI L D + T WR
Sbjct: 432 ARKEKNFAQADALRQQLAEAGIILEDGPQGTTWR 465
>sp|A1WT89|SYC_HALHL Cysteine--tRNA ligase OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=cysS PE=3 SV=1
Length = 459
Score = 302 bits (773), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 166/392 (42%), Positives = 224/392 (57%), Gaps = 41/392 (10%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L PP ++PR ++ +E + +I ++I AYV + GDV+F+V P YG+LSG+R+E
Sbjct: 103 LGVEPPDHEPRATERLESMIALIEELIAGGHAYVGDNGDVYFSVASFPEYGKLSGRRVEE 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
R+G R+ D K +P DF LWKAAK+GEP+W SPWG GRPGWHIECSAMS L S FD
Sbjct: 163 LRSGSRIEPDEAKHDPVDFVLWKAAKSGEPAWPSPWGDGRPGWHIECSAMSRDLLGSHFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG+DL FPHHENEIAQS A V+YWMHNGHV ++EKM+KSLGNFFT+R +
Sbjct: 223 IHGGGVDLQFPHHENEIAQSECASGHRFVNYWMHNGHVRIDDEKMAKSLGNFFTVRDVLA 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
+ +R FL+S+HYRSPLNY+ LD A + +Y L+
Sbjct: 283 EHPAEVVRLFLLSSHYRSPLNYTGDALDEARGGLERLYNALRGL---------------- 326
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
PAA ++ R+ F M DD NT L F A +N L++ S
Sbjct: 327 -PAAAPARSQARERFREAMDDDFNTREALAVLFDGA-----REINRLREAGDASGAASAA 380
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKR--AELTEEDVLQLIEERAAAR 360
LR++ GA +LQQ + L+ A+ E++ L+ +R AAR
Sbjct: 381 AELREL----------------GAVLGLLQQDPEAYLRGDVADAEAEEIESLVAQRTAAR 424
Query: 361 KNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
K KDF+++D+IR +L +GI L D + T WR
Sbjct: 425 KAKDFAEADRIRDELQARGIELEDTPEGTKWR 456
>sp|A4XHE2|SYC_CALS8 Cysteine--tRNA ligase OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=cysS PE=3 SV=1
Length = 465
Score = 301 bits (772), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 160/380 (42%), Positives = 228/380 (60%), Gaps = 28/380 (7%)
Query: 10 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERV 69
T PR ++ +E + +I ++I+ AYVV+GDV+F K YG+LS + +E+ AG RV
Sbjct: 108 TKSPRATEEIEDMIALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEDLMAGARV 167
Query: 70 AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 129
+K +P DFALWKA K GEP+W+SPWG GRPGWHIECS M+ YL DIH GG D
Sbjct: 168 DPSEKKEDPLDFALWKAKKEGEPAWNSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQD 227
Query: 130 LIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLAL 189
LIFPHHENEIAQS AA +W+HNG+V NNEKMSKSLGNFFT+R+I E+YHP AL
Sbjct: 228 LIFPHHENEIAQSEAATGKPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIEKYHPEAL 287
Query: 190 RHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDC 249
R F++ AHYR PLN+S+ ++ A A+ IY ++ E + Q ++ + +
Sbjct: 288 RLFMLQAHYRKPLNFSIDLIEQAEVALKRIYTCYENLEFLI---QNAASSSENDDKLKAA 344
Query: 250 INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIE 309
I +L+ +F M DDLNT+ TG + ++ IN+ N K E+L +
Sbjct: 345 IEELKAKFIDAMEDDLNTAEA-TGYLFEMVREINTHANSCSK-----------ETLTFAK 392
Query: 310 NEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSD 369
+ +KE+ ILG+L + E E +++L+L+E+R ARK K+F ++D
Sbjct: 393 DILKELCSILGILEQYSAKE-------------EAIPQEILELVEKRNQARKAKNFLEAD 439
Query: 370 QIRADLTRKGIALMDMGKET 389
+IR +L G ++D + T
Sbjct: 440 RIRDELKSLGYIVLDTPQGT 459
>sp|Q6FC71|SYC_ACIAD Cysteine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=cysS
PE=3 SV=1
Length = 473
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/395 (41%), Positives = 238/395 (60%), Gaps = 31/395 (7%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRL 60
A L C P P+ ++++ ++++MI+ +++ AY GDV+F V K YGRLSG++L
Sbjct: 103 AKLGCAEPDEAPKATEYIGEMQNMISTLVDKGSAYPASNGDVYFEVSKFEKYGRLSGRKL 162
Query: 61 ENNRAG--ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLS 118
E+ +AG ERV ++ K++P DF LWK AK EPSW SPWG GRPGWHIECSAMS L
Sbjct: 163 EDMQAGASERVDIEVEKKHPFDFVLWKGAKPNEPSWVSPWGNGRPGWHIECSAMSTCCLG 222
Query: 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 178
+ FDIHGGG DL FPHHENEIAQS A+ + V+YWMH G + + EKMSKSLGNFFTIR
Sbjct: 223 NHFDIHGGGSDLTFPHHENEIAQSEASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIR 282
Query: 179 QITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK 238
+ E++HP +R+F++S+HYRSP+N+S + L A A+ Y + E Q +G+
Sbjct: 283 DVMEKFHPEVIRYFIVSSHYRSPVNFSDVALKEAKTALTRFYHAFKAYE------QVYGQ 336
Query: 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 298
+ +D + + F+ M DD NT + F+ +N LN K+Q +Q
Sbjct: 337 N---DSTQKD--EQFIERFNIAMRDDFNTPEAIAVLFE-----LNRELNRAVKEQQAEQA 386
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLK-DKALKRAELTEEDVLQLIEERA 357
+LR + +ILGL+ +V + LK D + L+++++ +I++RA
Sbjct: 387 AIYYVTLRHL-------TQILGLVQ----HDVDEFLKSDIGQEVLSLSDDEIQAMIQQRA 435
Query: 358 AARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
A+K KDFS +D IR L +G+ L D + T+WR
Sbjct: 436 DAKKAKDFSGADAIRQALLDQGVVLEDTRQGTLWR 470
>sp|C5A739|SYC_THEGJ Cysteine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=cysS PE=3 SV=1
Length = 476
Score = 299 bits (765), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 166/392 (42%), Positives = 225/392 (57%), Gaps = 20/392 (5%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M L+ P PRV++HM+ I I ++ AY V+F V K +YG+LS +L
Sbjct: 101 MKALKVKPADIYPRVTEHMQDIISFIKKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKIKL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ G RV KRNP DFALWK AK GEP W+SPWG GRPGWHIECS MS+ YL
Sbjct: 161 EDLVKGARVEPGEGKRNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSTMSSKYLGES 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DLIFPHHENEIAQS A V YWMH G + N EKMSKSLGNF T+R++
Sbjct: 221 FDIHGGGNDLIFPHHENEIAQSEACFGHEWVHYWMHTGFLMVNGEKMSKSLGNFVTVREL 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+RY+P +R F++ HYRSPL+YS ++ A + + +Y TL++ VA+S + +
Sbjct: 281 LKRYNPEVIRLFVLQRHYRSPLDYSEEGIEHAKNNLERLYNTLENIRVAMSKAEISFRWD 340
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
A + I R +F+ M DD NT+ L F+ + IN L ++K PK+
Sbjct: 341 EPEFRAYEAIRDARKKFYEAMDDDFNTAEALKAVFEVS-NAINRYLTEVEK--PKES--- 394
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 360
LRK K+V + GL + + ++ ++AE EE + L+E RA R
Sbjct: 395 ---ILRKAWEFFKDVGEVFGL-----FEDYFKE------QKAENDEELINLLVEVRAQLR 440
Query: 361 KNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
K K F +D+IR +L + GI L D + T+W+
Sbjct: 441 KEKKFDLADKIREELRKLGIQLEDTPQGTVWK 472
>sp|Q9UYV2|SYC_PYRAB Cysteine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=cysS PE=3 SV=1
Length = 477
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 160/395 (40%), Positives = 229/395 (57%), Gaps = 26/395 (6%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M L+ P PRV++H++ I + I ++ AY V+F V+K +YG+LSG ++
Sbjct: 101 MNALKVKPADIYPRVTEHIDDIIEFIKKLKEKGYAYEGSDGVYFEVQKFKDYGKLSGVKI 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E R G RV K+NP DFALWK AK GEP WDSPWG GRPGWHIECS MS+ YL
Sbjct: 161 EELRKGARVEPGEGKKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGES 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DLIFPHHENEIAQS A V YW+H G V EKMSKSLGNF T+R++
Sbjct: 221 FDIHGGGNDLIFPHHENEIAQSEACFGHEWVRYWLHTGFVMVKGEKMSKSLGNFVTVREL 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+RY P +R F++ HYRSPL+Y+ L A + + +Y TL++ +A+ + K +
Sbjct: 281 LQRYSPEVIRLFVLQKHYRSPLDYTEEGLQHAKNNLERLYNTLENIRIAMRNAELSYKWS 340
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN--MLKKKQPKQQQ 298
+ A + I + R +F+ M DD NT+ L F+ +++++N +L+ +PK+
Sbjct: 341 EKDFEAYEAIREARKKFYDAMDDDFNTAEALKAVFE-----VSNAINKYILEVDKPKESI 395
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQ-LIEERA 357
L + E +++ SEV +D + + EE +++ L+E R
Sbjct: 396 L----------RKALEFFKVV--------SEVFGIFEDYFKEEKKGEEEKLIELLVEVRK 437
Query: 358 AARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
RK K F +D+IR +L + GI L D G+ET+W+
Sbjct: 438 QLRKEKRFDLADKIREELRKLGIQLEDKGQETVWK 472
>sp|Q0HTK4|SYC_SHESR Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=cysS PE=3
SV=1
Length = 461
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 167/393 (42%), Positives = 221/393 (56%), Gaps = 42/393 (10%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLEN 62
L + P ++PR + H+ +I DM+ +++ AYV +GDV F+V P YGRLSGQ LE
Sbjct: 105 LNMIRPDFEPRATLHIAEIIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQ 164
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+AG RV VD K+NP DF LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FD
Sbjct: 165 LQAGARVEVDDNKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFD 224
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG DL FPHHENEIAQSC A V+YWMH G V + EKMSKSLGNFFTIR +
Sbjct: 225 IHGGGSDLQFPHHENEIAQSCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG 284
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
Y P +R+FL+S HYRS +NYS L A A+ +Y ++D ++ ++P
Sbjct: 285 HYDPETVRYFLLSGHYRSQINYSEENLKQARAALERLYTAIKDVDLTVAP---------- 334
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
AE+ + K F A M DD NT + F + +N LK Q +
Sbjct: 335 -APAEEFVAK----FKAAMDDDFNTPEAYSVLFD-----MVREINRLKTTDMAQASAMAV 384
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQ---LIEERAAA 359
+K++ +LGL L Q D A + E ++++V + LI ER A
Sbjct: 385 --------AMKQLADVLGL---------LHQAPD-AFFKGEGSDDEVAEIEALIVERNRA 426
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
R KD+ +D R L G+ L D T WR
Sbjct: 427 RAEKDWPAADVARNRLNELGVVLEDGPSGTTWR 459
>sp|Q8U227|SYC_PYRFU Cysteine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=cysS PE=3 SV=2
Length = 477
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 162/395 (41%), Positives = 217/395 (54%), Gaps = 18/395 (4%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M L+ P PRV+DH++ I + I ++ AY ++F V+K P YG+LSG ++
Sbjct: 100 MEALKVKPADIYPRVTDHIDDIIEFIGKLKEKGYAYEGSDGIYFEVKKFPEYGKLSGVKI 159
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E+ + G RV K+NP DFALWK AK GEP WDSPWG GRPGWHIECS MS+ YL
Sbjct: 160 EDLQKGARVEPGEGKKNPEDFALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGES 219
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DLIFPHHENEIAQS A V YW+H G V EKMSKSLGNF TIR++
Sbjct: 220 FDIHGGGNDLIFPHHENEIAQSEACFGHEWVKYWLHTGFVMVKGEKMSKSLGNFVTIREL 279
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+RY P +R F++ HYRSPL Y+ L A + + +Y TL++ VAL +
Sbjct: 280 LKRYEPEVIRFFVLQKHYRSPLEYTEEGLQHAKNNLQRLYNTLENIRVALRNAEISYTWG 339
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
+ + I + + +F+ M DD NT+ L F+ A IN L K PK+ L
Sbjct: 340 ELEFKTYEIIREGKRKFYEAMDDDFNTAEALKAVFEVA-NAINKYLTEANK--PKESILR 396
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR 360
KI +EV G + + ++ + + +L E L+E R R
Sbjct: 397 KALEFFKIVSEV-----------FGVFEDYFREETKEREESEKLIE----LLVEVRKQLR 441
Query: 361 KNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCV 395
K K + +D IR +L + GI L D G ET W+ +
Sbjct: 442 KEKRYELADMIREELKKLGIQLEDRGSETTWKRII 476
>sp|Q0HH98|SYC_SHESM Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=cysS PE=3
SV=1
Length = 461
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/393 (42%), Positives = 221/393 (56%), Gaps = 42/393 (10%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLEN 62
L + P ++PR + H+ +I DM+ +++ AYV +GDV F+V P YGRLSGQ LE
Sbjct: 105 LNMIRPDFEPRATLHITEIIDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQ 164
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+AG RV VD K+NP DF LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FD
Sbjct: 165 LQAGARVEVDDNKQNPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFD 224
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG DL FPHHENEIAQSC A V+YWMH G V + EKMSKSLGNFFTIR +
Sbjct: 225 IHGGGSDLQFPHHENEIAQSCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLG 284
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
Y P +R+FL+S HYRS +NYS L A A+ +Y ++D ++ ++P
Sbjct: 285 HYDPETVRYFLLSGHYRSQINYSEENLKQARAALERLYTAIKDVDLTVAP---------- 334
Query: 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 302
AE+ + K F A M DD NT + F + +N LK Q +
Sbjct: 335 -APAEEFVAK----FKAAMDDDFNTPEAYSVLFD-----MVREINRLKTTDMAQASAMAV 384
Query: 303 ESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQ---LIEERAAA 359
+K++ +LGL L Q D A + E ++++V + LI ER A
Sbjct: 385 --------AMKQLADVLGL---------LHQAPD-AFFKGEGSDDEVAEIEALIVERNRA 426
Query: 360 RKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
R KD+ +D R L G+ L D T WR
Sbjct: 427 RVEKDWPAADVARNRLNELGVVLEDGPSGTTWR 459
>sp|A3M419|SYC_ACIBT Cysteine--tRNA ligase OS=Acinetobacter baumannii (strain ATCC 17978
/ NCDC KC 755) GN=cysS PE=3 SV=2
Length = 473
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 236/394 (59%), Gaps = 29/394 (7%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRL 60
A+L CL P P+ +++++Q+++MI ++N AY GDV+F V K YGRLSG++L
Sbjct: 103 ANLGCLAPDEAPKATEYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKL 162
Query: 61 ENNRAG--ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLS 118
E+ +AG ERV V+ K++P DF LWK AK EPSW SPWG GRPGWHIECSAMS L
Sbjct: 163 EDMQAGASERVDVEVEKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLG 222
Query: 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 178
+ FDIHGGG DL+FPHHENEIAQS A+ + V+YWMH G + + EKMSKSLGNFFTIR
Sbjct: 223 NHFDIHGGGSDLMFPHHENEIAQSEASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIR 282
Query: 179 QITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK 238
+ E++HP +R+F++S+HYRSP+N+S + L A ++ Y + + + Q +G+
Sbjct: 283 DVMEKFHPEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQ------QVYGQ 336
Query: 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 298
T E + F+ M DD NT+ + F+ +N LN K++ Q
Sbjct: 337 T-----TTEALDQSFIERFNNAMCDDFNTAEAMAVLFE-----LNKELNRAVKEEQADQA 386
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
L +LR + N ILGL+ + + AL L++ ++ I++R
Sbjct: 387 TVLYSTLRHLTN-------ILGLVQHNVDDFLKSDIGQDALA---LSDAEIEDFIQQRVD 436
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
A+K KDF+K+D IR L +G+ L D + T+WR
Sbjct: 437 AKKAKDFAKADSIRQSLLEQGVVLEDTRQGTVWR 470
>sp|B2HX34|SYC_ACIBC Cysteine--tRNA ligase OS=Acinetobacter baumannii (strain ACICU)
GN=cysS PE=3 SV=1
Length = 473
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 236/394 (59%), Gaps = 29/394 (7%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRL 60
A+L CL P P+ +++++Q+++MI ++N AY GDV+F V K YGRLSG++L
Sbjct: 103 ANLGCLAPDEAPKATEYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKL 162
Query: 61 ENNRAG--ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLS 118
E+ +AG ERV V+ K++P DF LWK AK EPSW SPWG GRPGWHIECSAMS L
Sbjct: 163 EDMQAGASERVDVEVEKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLG 222
Query: 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 178
+ FDIHGGG DL+FPHHENEIAQS A+ + V+YWMH G + + EKMSKSLGNFFTIR
Sbjct: 223 NHFDIHGGGSDLMFPHHENEIAQSEASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIR 282
Query: 179 QITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK 238
+ E++HP +R+F++S+HYRSP+N+S + L A ++ Y + + + Q +G+
Sbjct: 283 DVMEKFHPEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQ------QVYGQ 336
Query: 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 298
T E + F+ M DD NT+ + F+ +N LN K++ Q
Sbjct: 337 T-----TTEALDQSFIERFNNAMCDDFNTAEAMAVLFE-----LNKELNRAVKEEQADQA 386
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
L +LR + N ILGL+ + + AL L++ ++ I++R
Sbjct: 387 TVLYSTLRHLTN-------ILGLVQHNVDDFLKSDIGQDALA---LSDAEIEDFIQQRVD 436
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
A+K KDF+K+D IR L +G+ L D + T+WR
Sbjct: 437 AKKAKDFAKADSIRQSLLEQGVVLEDTRQGTVWR 470
>sp|O67163|SYC_AQUAE Cysteine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=cysS PE=3
SV=1
Length = 495
Score = 295 bits (756), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 160/398 (40%), Positives = 236/398 (59%), Gaps = 14/398 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M +++ P +PRV++H+ +I ++I +++ AYVVEGDV+F+V+K +YG+LS + +
Sbjct: 101 MENIRVRPADVEPRVTEHIPEIIEVIQKLVEKGYAYVVEGDVYFSVKKFKDYGKLSKRDI 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E AG RV +KR+P DFALWKA+KAGEP+WDSPWG GRPGWH EC AM +L
Sbjct: 161 EELIAGARVEPSEKKRDPLDFALWKASKAGEPAWDSPWGKGRPGWHTECVAMVFKHLGET 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
DIHGGG+DL+FPHHENEIAQ+ A YWMHNG VT +KMSKSLGN+ T+R++
Sbjct: 221 IDIHGGGLDLVFPHHENEIAQAEAITGKPFARYWMHNGLVTVGGQKMSKSLGNYVTLREV 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+YHP LR ++ HYRSPL++S +++ A + ++D E+ K
Sbjct: 281 YTKYHPDVLRLLVLFTHYRSPLDFSWEKMEETLKAYERLKNAIEDLELLKKLQVVESKEG 340
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
+P E + + + F+A +SDD NT L+ ++ + LN +K K + +++
Sbjct: 341 GTHPLYEQ-VKEFEENFYASLSDDFNTPEALSHVYK-----LVGELNKVKNKAYSEGKIT 394
Query: 301 LIESLRKIENEVKEVL----RILGLLPPGAYSEV-LQQLKDKALKRAELTEEDVLQ-LIE 354
E L E K +L +I GLL Y E ++++ ++ L+ ++ +E ++Q LIE
Sbjct: 395 DRE-LSAYEFASKSLLNTMKKIFGLL-EDLYPECKVERVVERELEAGQVFDEKLIQILIE 452
Query: 355 ERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
R ARK K F +D IR L GI L D T W+
Sbjct: 453 ARNIARKEKVFKVADYIRDKLKELGIVLEDTPAGTKWK 490
>sp|Q18CD5|SYC_CLOD6 Cysteine--tRNA ligase OS=Clostridium difficile (strain 630) GN=cysS
PE=3 SV=2
Length = 465
Score = 295 bits (756), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/383 (41%), Positives = 226/383 (59%), Gaps = 27/383 (7%)
Query: 10 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERV 69
T P+V+D+++QI + I ++ + AY V GDV+F K YG+LSGQ+ E+ AG R+
Sbjct: 108 TVHPQVTDNIQQIIEFIKELEDKGYAYAVNGDVYFDTNKFEGYGKLSGQKQEDLEAGARI 167
Query: 70 AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 129
V+ +KR+P DF LWKA K GEP WDSPWG GRPGWHIECS MS YL DIH GG D
Sbjct: 168 EVNDQKRHPMDFVLWKAKKEGEPGWDSPWGEGRPGWHIECSVMSKRYLGETIDIHAGGQD 227
Query: 130 LIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLAL 189
L FPHHENEIAQS A + YWMHNG++ N+EKMSKS GNFFT+R I++ Y +
Sbjct: 228 LTFPHHENEIAQSEARSGKTFSKYWMHNGYININDEKMSKSKGNFFTVRDISKLYDLEIV 287
Query: 190 RHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDC 249
R F++SAHYR+P+N+S L+ A + +Y T + E LS E T + ++
Sbjct: 288 RFFMLSAHYRNPVNFSDEMLNQAKAGLERLYNTKEKLEFTLSNLVESPLTEKEVELVKE- 346
Query: 250 INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIE 309
++ R +F M DD+NT+ ++ F+ A K INS+++ + S +E +K
Sbjct: 347 LDDFRQKFIDAMDDDVNTADAVSVIFELA-KLINSNVD----------ENSSLEFAKKCL 395
Query: 310 NEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSD 369
+E E+ +L ++ + KD L ++D+ +LI++R A+KNK+F +D
Sbjct: 396 DEFNELTGVLN---------IVNKKKDTVL------DKDIEELIQKRTDAKKNKEFQLAD 440
Query: 370 QIRADLTRKGIALMDMGKETIWR 392
IR L GI L D + W+
Sbjct: 441 DIRQQLLDMGIVLEDTRQGVKWK 463
>sp|Q5WX29|SYC_LEGPL Cysteine--tRNA ligase OS=Legionella pneumophila (strain Lens)
GN=cysS PE=3 SV=1
Length = 456
Score = 295 bits (755), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 166/395 (42%), Positives = 226/395 (57%), Gaps = 51/395 (12%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L LPP ++PR + H+E I +I +++ AYV E GDV + V+ P YG+LS + +E
Sbjct: 103 LNILPPDHEPRATGHIETIIRLIQRLLEKGNAYVSENGDVCYEVDTFPEYGKLSHKDIEG 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+G RV + KR+P DF LWK AK GEPSW SPWG GRPGWHIECSAM+ H L +FD
Sbjct: 163 LVSGSRVEIVKEKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG+DL FPHHENEIAQS AA +YW+H G + N EKM+KS+GNF+TI + +
Sbjct: 223 IHGGGLDLQFPHHENEIAQSEAATGKPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVLK 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDC--EVALSPFQEHGKTA 240
+HP +R+FL+S+HYRSPLNYS L +A A+ +YQ ++D + A S E+
Sbjct: 283 EHHPEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTADSKLDEY---- 338
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
+++F+ M+DD NT L+ FQ L + K +
Sbjct: 339 ------------WQEQFNQAMNDDFNTPVALSVLFQ------------LAHEVNKSNSPA 374
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVL---QLIEERA 357
L +L+ + ILG L Q ++ ++ L EE+ L QLI ER
Sbjct: 375 LAHTLKNLAG-------ILGFL----------QKDPESFLQSGLAEEEKLVIEQLIAERL 417
Query: 358 AARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
AR ++++K+DQIRADL KGI L D T WR
Sbjct: 418 KARAERNWTKADQIRADLLSKGIELEDGATGTTWR 452
>sp|Q1QC19|SYC_PSYCK Cysteine--tRNA ligase OS=Psychrobacter cryohalolentis (strain K5)
GN=cysS PE=3 SV=1
Length = 488
Score = 295 bits (755), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 165/395 (41%), Positives = 234/395 (59%), Gaps = 29/395 (7%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L CL P +PR +DH+++++ MI +++ND AY + GDV++AV+ +YG+LS + L++
Sbjct: 115 LGCLSPDAEPRATDHIDEMQQMIETLVSNDYAYAGDNGDVYYAVDSFADYGKLSKRNLDD 174
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+AG RV V++ KRNP DF LWKAAK EP W S WG GRPGWHIECSAMS L + FD
Sbjct: 175 MQAGSRVEVENDKRNPFDFVLWKAAKPDEPQWASAWGQGRPGWHIECSAMSTKCLGNTFD 234
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG DL FPHHENEIAQS AA WMH G + + EKMSKSLGNFFTIR +
Sbjct: 235 IHGGGHDLQFPHHENEIAQSEAATGCEYARNWMHVGFINVDGEKMSKSLGNFFTIRDVMA 294
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT--- 239
+Y P +R FL+S+HYRS +N+S LD + +++ +YQ L+ E Q+ GK
Sbjct: 295 KYLPETVRFFLLSSHYRSQVNFSDSALDESHNSLSRLYQALKVAE------QQKGKVLII 348
Query: 240 --ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ 297
A IN A + + +F M+DD N+S ++ F + +N K Q
Sbjct: 349 DEALINNAYASAVGQ---DFIKAMNDDFNSSTAISVLFG-----LARDINKASKAQD--- 397
Query: 298 QLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERA 357
+E+ ++ +K + + L +L + LQ + + + + LT+E + LI ERA
Sbjct: 398 ----VETAWQLAQHLKALAQTLNILQQ-PVQQFLQAVIGEVAEDS-LTDEAIDGLIIERA 451
Query: 358 AARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
A+ NK+F+++D+IR L GI L D T WR
Sbjct: 452 DAKTNKNFARADEIRVQLKEAGIELEDSRAGTTWR 486
>sp|B1KLU0|SYC_SHEWM Cysteine--tRNA ligase OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=cysS PE=3 SV=1
Length = 459
Score = 295 bits (755), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 165/385 (42%), Positives = 219/385 (56%), Gaps = 36/385 (9%)
Query: 9 PTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGE 67
P ++PR + HM +I +M+ ++I + AYV GDV F+V P YGRLSGQ LE +AG
Sbjct: 108 PDFEPRATLHMAEIIEMVEKLIEKEHAYVSSNGDVLFSVSSFPEYGRLSGQNLEQLQAGA 167
Query: 68 RVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 127
RV V+ KR+P DF LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG
Sbjct: 168 RVEVEDSKRDPMDFVLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGQHFDIHGGG 227
Query: 128 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL 187
DL FPHHENEIAQSC A V+YWMH G V + EKMSKSL NFFTIR + Y
Sbjct: 228 SDLQFPHHENEIAQSCCAHNTPYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLAHYDAA 287
Query: 188 ALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAE 247
+R+FL+S HYRS LNYS L A A+ +Y L+D ++ + P AAE
Sbjct: 288 TIRYFLLSGHYRSQLNYSEDNLKQAKSALARLYTALKDLDLTVEP-----------AAAE 336
Query: 248 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRK 307
+ ++K F M DD NT + F D ++ +N + +++ +
Sbjct: 337 NFVSK----FKQAMDDDFNTPEAYSVLF-DMVREVN------------RLKVTDLAQASA 379
Query: 308 IENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSK 367
+ +KE+ +LG+L S + D AE+ E V LI ER AR KD+
Sbjct: 380 LAVRLKELAGVLGILEQDVDSFFKGESND-----AEVAE--VEALIAERNRARAEKDWPA 432
Query: 368 SDQIRADLTRKGIALMDMGKETIWR 392
+D R L G+ L D + T WR
Sbjct: 433 ADIARDGLNALGVILEDGPEGTTWR 457
>sp|O58370|SYC_PYRHO Cysteine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=cysS
PE=3 SV=1
Length = 476
Score = 295 bits (754), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 162/394 (41%), Positives = 224/394 (56%), Gaps = 24/394 (6%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
M L+ P PRV++H+E I I ++ AY V+F V+K YG+LSG +L
Sbjct: 101 MKALKVKPADIYPRVTEHIEDIIQFIERLKEKGYAYEGSDGVYFEVQKFKEYGKLSGVKL 160
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
E R G RV K+NP DFALWK AK GEP W+SPWG GRPGWHIECS MS+ YL
Sbjct: 161 EELRKGARVEPGEGKKNPEDFALWKKAKPGEPKWESPWGEGRPGWHIECSVMSSKYLGES 220
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180
FDIHGGG DLIFPHHENEIAQS A V YW+H G V EKMSKSLGNF T+R++
Sbjct: 221 FDIHGGGNDLIFPHHENEIAQSEACFGHEWVHYWLHTGFVMVKGEKMSKSLGNFVTVREL 280
Query: 181 TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240
+RY P +R F++ HYRSPL+YS L A + + +Y TL++ +A+ +
Sbjct: 281 LQRYSPEVIRFFVLQKHYRSPLDYSEEGLQHAKNNLERLYNTLENIRIAMENAELAYTWD 340
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN--MLKKKQPKQQQ 298
+ A + I + R +F+ M DD NT+ L F+ +++++N + + ++PK+
Sbjct: 341 ENDFKAYNSIKEARRKFYEAMDDDFNTAEALKAVFE-----VSNAINKYITEAEKPKES- 394
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
LRK + V I G+ + ++A+ E+ + LI+ RA
Sbjct: 395 -----VLRKAWEFFRTVGEIFGIF-----------EEYFKEEKAKEEEKLIELLIQVRAE 438
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
RK + F +D+IR +L + GI L D GKETIW+
Sbjct: 439 LRKERKFELADKIREELRKLGIQLEDKGKETIWK 472
>sp|B0VS71|SYC_ACIBS Cysteine--tRNA ligase OS=Acinetobacter baumannii (strain SDF)
GN=cysS PE=3 SV=1
Length = 473
Score = 294 bits (753), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 163/394 (41%), Positives = 237/394 (60%), Gaps = 29/394 (7%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRL 60
A+L CL P P+ +++++Q+++MI ++N AY GDV+F V K YGRLSG++L
Sbjct: 103 ANLGCLAPDEAPKATEYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKL 162
Query: 61 ENNRAG--ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLS 118
++ +AG ERV V+ K++P DF LWK AK EPSW SPWG GRPGWHIECSAMS L
Sbjct: 163 DDMQAGASERVDVEVEKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLG 222
Query: 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 178
+ FDIHGGG DL+FPHHENEIAQS A+ + V+YW+H G + + EKMSKSLGNFFTIR
Sbjct: 223 NHFDIHGGGSDLMFPHHENEIAQSEASTGEQYVNYWIHVGFINVDGEKMSKSLGNFFTIR 282
Query: 179 QITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK 238
+ E++HP +R+F++S+HYRSP+N+S + L A ++ Y + + + Q +G+
Sbjct: 283 DVMEKFHPEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQ------QVYGQ 336
Query: 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 298
T E + F+ M DD NT+ + F+ +N LN K++ Q
Sbjct: 337 T-----TTETLDQSFVERFNNAMCDDFNTAEAMAVLFE-----LNKELNRAVKEEQADQA 386
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
L +LR + N ILGL+ + + +AL L++ ++ I++R
Sbjct: 387 TVLYSTLRHLTN-------ILGLVQHNVDDFLKSDIGQEALA---LSDAEIEDFIQQRVD 436
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
A+K KDF+K+D IR L +G+ L D + T+WR
Sbjct: 437 AKKAKDFAKADSIRQSLLEQGVVLEDTRQGTVWR 470
>sp|Q5ZVY1|SYC_LEGPH Cysteine--tRNA ligase OS=Legionella pneumophila subsp. pneumophila
(strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=cysS
PE=3 SV=1
Length = 456
Score = 294 bits (753), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 168/397 (42%), Positives = 227/397 (57%), Gaps = 55/397 (13%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L LPP ++PR + H+E I +I +++ AYV E GDV + V+ P YG+LS + +E
Sbjct: 103 LNILPPDHEPRATGHIETIIRLIQRLLEKGNAYVSENGDVCYEVDTFPEYGKLSHKDIEG 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+G RV + KR+P DF LWK AK GEPSW SPWG GRPGWHIECSAM+ H L +FD
Sbjct: 163 LVSGSRVEIVKEKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG+DL FPHHENEIAQS AA +YW+H G + N EKM+KS+GNF+TI + +
Sbjct: 223 IHGGGLDLQFPHHENEIAQSEAATGKPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVLK 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARI 242
+HP +R+FL+S+HYRSPLNYS L +A A+ +YQ ++D +
Sbjct: 283 EHHPEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKD----------------V 326
Query: 243 NPAAEDCINKLRD----EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 298
P ED +KL + +F+ M+DD NT L+ FQ L + K
Sbjct: 327 PPQTED--SKLDEYWQVQFNQAMNDDFNTPVALSVLFQ------------LAHEVNKSNS 372
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVL---QLIEE 355
+L +L+ + ILG L Q ++ ++ L EE+ L QLI E
Sbjct: 373 PALAHTLKNLAG-------ILGFL----------QKDPESFLQSGLAEEEKLVIEQLIAE 415
Query: 356 RAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
R AR ++++K+DQIRADL KGI L D T WR
Sbjct: 416 RLQARAERNWAKADQIRADLLSKGIELEDGATGTTWR 452
>sp|B0VAU1|SYC_ACIBY Cysteine--tRNA ligase OS=Acinetobacter baumannii (strain AYE)
GN=cysS PE=3 SV=1
Length = 473
Score = 294 bits (753), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 163/394 (41%), Positives = 236/394 (59%), Gaps = 29/394 (7%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRL 60
A+L CL P P+ +++++Q+++MI ++N AY GDV+F V K YGRLSG++L
Sbjct: 103 ANLGCLAPDEAPKATEYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKL 162
Query: 61 ENNRAG--ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLS 118
++ +AG ER+ V+ K++P DF LWK AK EPSW SPWG GRPGWHIECSAMS L
Sbjct: 163 DDMQAGASERIDVEVEKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLG 222
Query: 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 178
+ FDIHGGG DL+FPHHENEIAQS A+ + V+YWMH G + + EKMSKSLGNFFTIR
Sbjct: 223 NHFDIHGGGSDLMFPHHENEIAQSEASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIR 282
Query: 179 QITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK 238
+ E++HP +R+F++S+HYRSP+N+S + L A ++ Y + + + Q +G+
Sbjct: 283 DVMEKFHPEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQ------QVYGQ 336
Query: 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 298
T E + F+ M DD NT+ + F+ +N LN K++ Q
Sbjct: 337 T-----TTEALDQSFIERFNNAMCDDFNTAEAMAVLFE-----LNKELNRAVKEEQADQA 386
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
L +LR + N ILGL+ + + AL L++ ++ I++R
Sbjct: 387 TVLYSTLRHLTN-------ILGLVQHNVDDFLKSDIGQDALA---LSDAEIEDFIQQRVD 436
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
A+K KDF+K+D IR L +G+ L D + T+WR
Sbjct: 437 AKKAKDFAKADSIRQSLLEQGVVLEDTRQGTVWR 470
>sp|B7IBU3|SYC_ACIB5 Cysteine--tRNA ligase OS=Acinetobacter baumannii (strain AB0057)
GN=cysS PE=3 SV=1
Length = 473
Score = 294 bits (753), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 163/394 (41%), Positives = 236/394 (59%), Gaps = 29/394 (7%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRL 60
A+L CL P P+ +++++Q+++MI ++N AY GDV+F V K YGRLSG++L
Sbjct: 103 ANLGCLAPDEAPKATEYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKL 162
Query: 61 ENNRAG--ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLS 118
++ +AG ER+ V+ K++P DF LWK AK EPSW SPWG GRPGWHIECSAMS L
Sbjct: 163 DDMQAGASERIDVEVEKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLG 222
Query: 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 178
+ FDIHGGG DL+FPHHENEIAQS A+ + V+YWMH G + + EKMSKSLGNFFTIR
Sbjct: 223 NHFDIHGGGSDLMFPHHENEIAQSEASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIR 282
Query: 179 QITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK 238
+ E++HP +R+F++S+HYRSP+N+S + L A ++ Y + + + Q +G+
Sbjct: 283 DVMEKFHPEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQ------QVYGQ 336
Query: 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 298
T E + F+ M DD NT+ + F+ +N LN K++ Q
Sbjct: 337 T-----TTEALDQSFIERFNNAMCDDFNTAEAMAVLFE-----LNKELNRAVKEEQADQA 386
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
L +LR + N ILGL+ + + AL L++ ++ I++R
Sbjct: 387 TVLYSTLRHLTN-------ILGLVQHNVDDFLKSDIGQDALA---LSDAEIEDFIQQRVD 436
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
A+K KDF+K+D IR L +G+ L D + T+WR
Sbjct: 437 AKKAKDFAKADSIRQSLLEQGVVLEDTRQGTVWR 470
>sp|B7GWA1|SYC_ACIB3 Cysteine--tRNA ligase OS=Acinetobacter baumannii (strain
AB307-0294) GN=cysS PE=3 SV=1
Length = 473
Score = 294 bits (753), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 163/394 (41%), Positives = 236/394 (59%), Gaps = 29/394 (7%)
Query: 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRL 60
A+L CL P P+ +++++Q+++MI ++N AY GDV+F V K YGRLSG++L
Sbjct: 103 ANLGCLAPDEAPKATEYIDQMQNMIGNLVNKGAAYPASNGDVYFEVTKFEKYGRLSGRKL 162
Query: 61 ENNRAG--ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLS 118
++ +AG ER+ V+ K++P DF LWK AK EPSW SPWG GRPGWHIECSAMS L
Sbjct: 163 DDMQAGASERIDVEVEKKHPFDFVLWKHAKENEPSWASPWGNGRPGWHIECSAMSTCCLG 222
Query: 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 178
+ FDIHGGG DL+FPHHENEIAQS A+ + V+YWMH G + + EKMSKSLGNFFTIR
Sbjct: 223 NHFDIHGGGSDLMFPHHENEIAQSEASTGEQYVNYWMHVGFINVDGEKMSKSLGNFFTIR 282
Query: 179 QITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK 238
+ E++HP +R+F++S+HYRSP+N+S + L A ++ Y + + + Q +G+
Sbjct: 283 DVMEKFHPEVIRYFIVSSHYRSPVNFSDVALKEAKTSLTRFYHSFKAYQ------QVYGQ 336
Query: 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 298
T E + F+ M DD NT+ + F+ +N LN K++ Q
Sbjct: 337 T-----TTEALDQSFIERFNNAMCDDFNTAEAMAVLFE-----LNKELNRAVKEEQADQA 386
Query: 299 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAA 358
L +LR + N ILGL+ + + AL L++ ++ I++R
Sbjct: 387 TVLYSTLRHLTN-------ILGLVQHNVDDFLKSDIGQDALA---LSDAEIEDFIQQRVD 436
Query: 359 ARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
A+K KDF+K+D IR L +G+ L D + T+WR
Sbjct: 437 AKKAKDFAKADSIRQSLLEQGVVLEDTRQGTVWR 470
>sp|A5IBG0|SYC_LEGPC Cysteine--tRNA ligase OS=Legionella pneumophila (strain Corby)
GN=cysS PE=3 SV=1
Length = 456
Score = 294 bits (752), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 165/395 (41%), Positives = 225/395 (56%), Gaps = 51/395 (12%)
Query: 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLEN 62
L LPP ++PR + H+E I +I +++ AYV E GDV + V+ P YG+LS + +E
Sbjct: 103 LNILPPDHEPRATGHIETIIRLIQRLLEKGSAYVSENGDVCYEVDTFPEYGKLSHKDIEG 162
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122
+G RV + KR+P DF LWK AK GEPSW SPWG GRPGWHIECSAM+ H L +FD
Sbjct: 163 LVSGSRVEIVKEKRSPLDFVLWKKAKPGEPSWPSPWGEGRPGWHIECSAMAMHELGEQFD 222
Query: 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
IHGGG+DL FPHHENEIAQS AA +YW+H G + N EKM+KS+GNF+TI + +
Sbjct: 223 IHGGGLDLQFPHHENEIAQSEAATGKPFANYWLHVGMLQVNGEKMAKSIGNFYTIADVLK 282
Query: 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDC--EVALSPFQEHGKTA 240
+HP +R+FL+S+HYRSPLNYS L +A A+ +YQ ++D + A S E+
Sbjct: 283 EHHPEVIRYFLLSSHYRSPLNYSEENLLNAKKALIRLYQAVKDVPPQTADSKLDEY---- 338
Query: 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 300
+++F+ M+DD NT L+ FQ L + K +
Sbjct: 339 ------------WQEQFNQAMNDDFNTPVALSVLFQ------------LAHEVNKSNSPA 374
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVL---QLIEERA 357
L +L+ + ILG L Q ++ ++ L EE+ L QLI ER
Sbjct: 375 LAHTLKNLAG-------ILGFL----------QKDPESFLQSGLAEEEKLVIEQLIAERL 417
Query: 358 AARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392
AR ++++K+DQIR DL KGI L D T WR
Sbjct: 418 QARAERNWAKADQIRTDLLSKGIELEDGATGTTWR 452
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,570,252
Number of Sequences: 539616
Number of extensions: 6499910
Number of successful extensions: 26196
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 23014
Number of HSP's gapped (non-prelim): 1282
length of query: 421
length of database: 191,569,459
effective HSP length: 120
effective length of query: 301
effective length of database: 126,815,539
effective search space: 38171477239
effective search space used: 38171477239
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)