Query 014658
Match_columns 421
No_of_seqs 299 out of 2378
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0215 CysS Cysteinyl-tRNA sy 100.0 4E-111 8E-116 837.7 32.7 356 1-393 100-463 (464)
2 PLN02946 cysteine-tRNA ligase 100.0 6E-105 1E-109 820.7 35.8 391 1-397 158-548 (557)
3 PRK14535 cysS cysteinyl-tRNA s 100.0 7E-100 1E-104 786.6 35.2 356 1-393 326-698 (699)
4 KOG2007 Cysteinyl-tRNA synthet 100.0 1.6E-98 3E-103 736.6 23.9 378 1-398 139-526 (586)
5 PRK14536 cysS cysteinyl-tRNA s 100.0 9.2E-97 2E-101 753.2 36.6 367 1-393 111-489 (490)
6 PRK00260 cysS cysteinyl-tRNA s 100.0 9.6E-96 2E-100 752.1 38.4 362 1-393 101-462 (463)
7 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.8E-96 4E-101 778.3 33.5 383 1-397 140-551 (651)
8 PRK14534 cysS cysteinyl-tRNA s 100.0 1.7E-95 4E-100 740.3 36.1 366 1-393 109-480 (481)
9 TIGR00435 cysS cysteinyl-tRNA 100.0 8.1E-93 1.8E-97 729.0 35.9 365 1-393 99-465 (465)
10 PF01406 tRNA-synt_1e: tRNA sy 100.0 1.5E-85 3.1E-90 625.8 12.0 214 1-214 86-300 (300)
11 PRK12418 cysteinyl-tRNA synthe 100.0 4.4E-84 9.4E-89 642.8 22.6 270 1-290 87-366 (384)
12 TIGR03447 mycothiol_MshC cyste 100.0 2.6E-83 5.5E-88 639.9 21.5 264 1-284 114-387 (411)
13 PRK11893 methionyl-tRNA synthe 100.0 1.9E-44 4.1E-49 377.9 25.0 311 1-320 80-460 (511)
14 KOG0436 Methionyl-tRNA synthet 100.0 8.2E-44 1.8E-48 343.5 19.0 316 3-324 120-511 (578)
15 PLN02224 methionine-tRNA ligas 100.0 1.2E-38 2.5E-43 335.8 28.8 285 1-293 148-499 (616)
16 COG0143 MetG Methionyl-tRNA sy 100.0 2.6E-38 5.5E-43 326.8 29.7 325 2-334 85-510 (558)
17 PRK12267 methionyl-tRNA synthe 100.0 6.5E-38 1.4E-42 336.3 26.4 284 1-293 83-432 (648)
18 PRK00133 metG methionyl-tRNA s 100.0 1.7E-37 3.7E-42 333.7 27.4 327 1-334 81-501 (673)
19 PLN02610 probable methionyl-tR 100.0 5.7E-37 1.2E-41 331.7 27.2 330 1-335 97-531 (801)
20 cd00668 Ile_Leu_Val_MetRS_core 100.0 1.9E-38 4.2E-43 312.5 11.4 193 1-204 92-312 (312)
21 TIGR00398 metG methionyl-tRNA 100.0 2.3E-36 5E-41 317.9 26.2 288 1-293 78-460 (530)
22 cd00672 CysRS_core catalytic c 100.0 8.1E-37 1.7E-41 283.4 10.3 101 105-205 113-213 (213)
23 PRK12268 methionyl-tRNA synthe 100.0 1.8E-34 3.9E-39 305.2 25.2 316 1-320 83-494 (556)
24 TIGR00395 leuS_arch leucyl-tRN 100.0 5.3E-30 1.1E-34 283.8 22.9 201 119-334 572-776 (938)
25 TIGR00422 valS valyl-tRNA synt 100.0 3.2E-30 6.9E-35 284.7 18.8 236 93-335 452-699 (861)
26 cd00814 MetRS_core catalytic c 100.0 4.2E-31 9.2E-36 260.9 9.3 200 1-204 79-319 (319)
27 COG0525 ValS Valyl-tRNA synthe 100.0 1.6E-29 3.6E-34 268.7 21.2 245 82-334 441-697 (877)
28 PRK12300 leuS leucyl-tRNA synt 100.0 4E-29 8.6E-34 275.7 18.9 198 119-334 529-730 (897)
29 PLN02843 isoleucyl-tRNA synthe 100.0 7.8E-29 1.7E-33 274.6 20.8 215 117-335 561-796 (974)
30 PRK05729 valS valyl-tRNA synth 100.0 1.2E-28 2.6E-33 272.2 20.8 210 119-335 472-692 (874)
31 PRK05743 ileS isoleucyl-tRNA s 100.0 1.2E-28 2.6E-33 272.3 18.7 212 118-334 543-768 (912)
32 PRK13208 valS valyl-tRNA synth 100.0 1.5E-28 3.2E-33 269.5 18.6 213 119-335 485-705 (800)
33 PRK13804 ileS isoleucyl-tRNA s 100.0 3.4E-28 7.4E-33 269.4 21.6 215 117-335 580-807 (961)
34 PRK14900 valS valyl-tRNA synth 100.0 2.1E-28 4.5E-33 273.0 19.1 234 95-335 468-714 (1052)
35 PLN02882 aminoacyl-tRNA ligase 100.0 3E-28 6.5E-33 272.9 20.5 213 119-335 566-800 (1159)
36 PLN02943 aminoacyl-tRNA ligase 100.0 1.2E-27 2.6E-32 265.0 21.2 235 95-335 512-770 (958)
37 PRK06039 ileS isoleucyl-tRNA s 100.0 8.3E-28 1.8E-32 267.5 18.0 212 119-335 544-771 (975)
38 PRK01611 argS arginyl-tRNA syn 100.0 1.3E-27 2.8E-32 249.7 17.4 278 1-324 190-504 (507)
39 TIGR00392 ileS isoleucyl-tRNA 99.9 1E-26 2.2E-31 257.1 20.6 212 119-335 563-790 (861)
40 PTZ00419 valyl-tRNA synthetase 99.9 6.5E-27 1.4E-31 261.3 16.9 213 119-335 537-804 (995)
41 PF09334 tRNA-synt_1g: tRNA sy 99.9 3.6E-27 7.7E-32 238.1 11.6 218 2-223 79-390 (391)
42 PTZ00427 isoleucine-tRNA ligas 99.9 4.2E-26 9E-31 255.1 20.9 212 119-335 672-905 (1205)
43 PLN02381 valyl-tRNA synthetase 99.9 7.4E-26 1.6E-30 252.3 19.1 212 119-334 607-870 (1066)
44 cd00812 LeuRS_core catalytic c 99.9 4.6E-27 9.9E-32 231.6 6.8 194 1-206 79-314 (314)
45 COG0060 IleS Isoleucyl-tRNA sy 99.9 1.6E-25 3.5E-30 241.0 16.7 210 121-334 556-778 (933)
46 cd00818 IleRS_core catalytic c 99.9 1.4E-25 3E-30 223.1 6.1 196 1-204 97-338 (338)
47 cd00817 ValRS_core catalytic c 99.9 1.5E-24 3.4E-29 219.0 10.9 199 1-204 96-382 (382)
48 PRK00390 leuS leucyl-tRNA synt 99.9 1.1E-23 2.4E-28 230.3 17.4 183 92-286 491-687 (805)
49 PLN02959 aminoacyl-tRNA ligase 99.9 4E-23 8.7E-28 231.1 22.2 202 119-334 670-877 (1084)
50 TIGR00396 leuS_bact leucyl-tRN 99.9 5.2E-23 1.1E-27 225.6 15.7 188 93-285 490-725 (842)
51 TIGR00456 argS arginyl-tRNA sy 99.9 3.2E-21 7E-26 203.9 23.2 277 2-324 246-563 (566)
52 COG0495 LeuS Leucyl-tRNA synth 99.9 5E-22 1.1E-26 212.4 17.0 164 119-290 525-699 (814)
53 KOG0432 Valyl-tRNA synthetase 99.9 1E-21 2.2E-26 205.2 17.8 223 93-323 520-796 (995)
54 PLN02563 aminoacyl-tRNA ligase 99.9 3.2E-21 7E-26 212.4 14.5 162 119-283 615-841 (963)
55 cd07963 Anticodon_Ia_Cys Antic 99.8 2.3E-19 5.1E-24 159.2 17.8 155 207-393 2-156 (156)
56 KOG0433 Isoleucyl-tRNA synthet 99.8 2.6E-19 5.7E-24 184.0 17.6 168 120-290 566-749 (937)
57 PRK12451 arginyl-tRNA syntheta 99.8 1E-18 2.2E-23 184.4 21.4 276 2-324 245-559 (562)
58 KOG1247 Methionyl-tRNA synthet 99.8 1E-19 2.3E-24 176.6 11.1 265 6-293 187-476 (567)
59 COG0018 ArgS Arginyl-tRNA synt 99.8 4.7E-17 1E-21 170.3 22.7 280 2-323 250-573 (577)
60 KOG0434 Isoleucyl-tRNA synthet 99.7 6.6E-17 1.4E-21 165.2 15.1 200 119-321 553-770 (1070)
61 PF00133 tRNA-synt_1: tRNA syn 99.7 6.8E-18 1.5E-22 180.0 7.8 86 119-205 513-601 (601)
62 PLN02286 arginine-tRNA ligase 99.7 9.9E-16 2.2E-20 162.0 23.0 274 2-324 250-573 (576)
63 PRK04156 gltX glutamyl-tRNA sy 99.7 5.7E-17 1.2E-21 168.5 8.5 198 1-214 162-403 (567)
64 KOG0437 Leucyl-tRNA synthetase 99.6 5.7E-16 1.2E-20 159.5 7.7 163 119-285 662-829 (1080)
65 PRK00750 lysK lysyl-tRNA synth 99.6 4.8E-15 1E-19 154.6 12.4 118 99-223 216-336 (510)
66 KOG0435 Leucyl-tRNA synthetase 99.6 1.6E-14 3.6E-19 147.9 14.2 195 93-292 497-749 (876)
67 cd00674 LysRS_core_class_I cat 99.6 2.5E-14 5.5E-19 141.8 12.2 126 90-221 199-330 (353)
68 TIGR00467 lysS_arch lysyl-tRNA 99.5 3.9E-14 8.4E-19 147.0 12.3 129 89-224 196-331 (515)
69 cd00671 ArgRS_core catalytic c 99.2 2.9E-11 6.2E-16 112.7 10.0 127 1-172 78-212 (212)
70 PF01921 tRNA-synt_1f: tRNA sy 99.2 2.1E-11 4.5E-16 120.1 5.9 126 89-219 205-336 (360)
71 COG1384 LysS Lysyl-tRNA synthe 99.0 2.2E-10 4.9E-15 116.0 5.6 118 99-221 211-333 (521)
72 PF00750 tRNA-synt_1d: tRNA sy 98.8 3.2E-09 7E-14 106.5 6.0 147 18-206 173-354 (354)
73 cd09287 GluRS_non_core catalyt 98.8 2.2E-08 4.8E-13 94.2 10.7 152 1-213 62-230 (240)
74 cd00802 class_I_aaRS_core cata 98.8 4.9E-09 1.1E-13 91.5 4.7 65 105-171 78-143 (143)
75 cd07962 Anticodon_Ia_Val Antic 98.7 2.3E-07 4.9E-12 80.1 13.1 88 204-293 1-94 (135)
76 cd07956 Anticodon_Ia_Arg Antic 98.6 7.8E-07 1.7E-11 78.8 12.6 140 183-324 2-153 (156)
77 cd07957 Anticodon_Ia_Met Antic 98.5 3.9E-06 8.4E-11 71.2 13.2 105 214-320 7-115 (129)
78 cd07960 Anticodon_Ia_Ile_BEm A 98.5 3.5E-06 7.6E-11 76.3 13.4 128 204-334 1-139 (180)
79 cd07958 Anticodon_Ia_Leu_BEm A 98.4 3.7E-06 7.9E-11 70.0 12.2 103 204-320 1-103 (117)
80 TIGR00464 gltX_bact glutamyl-t 98.4 4.8E-06 1E-10 86.5 14.0 186 2-212 61-311 (470)
81 cd07375 Anticodon_Ia_like Anti 98.4 7.4E-06 1.6E-10 67.8 12.1 85 207-293 2-89 (117)
82 cd07959 Anticodon_Ia_Leu_AEc A 98.4 1.1E-05 2.4E-10 67.3 13.1 103 204-321 1-104 (117)
83 PLN03233 putative glutamate-tR 98.3 4.6E-06 1E-10 86.6 11.0 201 2-215 71-312 (523)
84 PRK05347 glutaminyl-tRNA synth 98.2 1.2E-05 2.7E-10 83.8 13.1 203 2-215 89-336 (554)
85 TIGR00463 gltX_arch glutamyl-t 98.2 3.5E-06 7.7E-11 88.4 9.2 198 1-214 152-394 (560)
86 PF09190 DALR_2: DALR domain; 98.2 5E-06 1.1E-10 62.0 7.5 57 256-324 1-57 (63)
87 PRK14703 glutaminyl-tRNA synth 98.2 1.6E-05 3.5E-10 86.3 13.2 202 2-214 91-338 (771)
88 PRK01406 gltX glutamyl-tRNA sy 98.2 3.5E-05 7.6E-10 80.2 14.2 86 100-195 190-280 (476)
89 PTZ00402 glutamyl-tRNA synthet 98.1 2.7E-05 5.8E-10 82.0 12.7 201 2-215 112-354 (601)
90 cd07961 Anticodon_Ia_Ile_ABEc 98.1 7.4E-05 1.6E-09 67.8 13.4 127 204-334 1-140 (183)
91 PRK12410 glutamylglutaminyl-tR 98.1 4.8E-05 1E-09 77.8 12.9 182 2-211 59-281 (433)
92 cd00808 GluRS_core catalytic c 98.0 6.4E-05 1.4E-09 71.1 12.0 90 100-196 101-192 (239)
93 PLN02907 glutamate-tRNA ligase 98.0 7.3E-05 1.6E-09 81.3 13.3 201 2-214 273-513 (722)
94 cd00807 GlnRS_core catalytic c 98.0 5.3E-05 1.1E-09 71.3 10.2 148 2-213 61-228 (238)
95 cd00418 GlxRS_core catalytic c 97.9 7.9E-05 1.7E-09 70.0 10.9 87 101-197 93-184 (230)
96 smart00840 DALR_2 This DALR do 97.9 2.7E-05 5.8E-10 56.4 5.9 54 257-321 2-55 (56)
97 PRK14895 gltX glutamyl-tRNA sy 97.9 0.00025 5.4E-09 73.8 14.4 102 100-211 179-287 (513)
98 PRK12558 glutamyl-tRNA synthet 97.8 8.1E-05 1.8E-09 76.4 9.8 183 1-212 61-288 (445)
99 TIGR00440 glnS glutaminyl-tRNA 97.7 0.0004 8.6E-09 72.5 12.7 199 2-214 60-306 (522)
100 PLN02627 glutamyl-tRNA synthet 97.6 0.00041 8.8E-09 72.5 11.5 101 101-211 233-341 (535)
101 PTZ00437 glutaminyl-tRNA synth 97.6 0.00029 6.3E-09 73.8 9.6 193 2-215 111-352 (574)
102 PRK05710 glutamyl-Q tRNA(Asp) 97.6 0.00041 8.9E-09 67.7 9.6 163 2-195 65-261 (299)
103 PF08264 Anticodon_1: Anticodo 97.5 0.00029 6.3E-09 61.6 7.4 88 243-334 1-92 (153)
104 COG0008 GlnS Glutamyl- and glu 97.4 0.0006 1.3E-08 70.6 9.5 189 2-211 69-299 (472)
105 PLN02859 glutamine-tRNA ligase 97.4 0.001 2.2E-08 72.2 10.8 198 2-212 324-563 (788)
106 PF05746 DALR_1: DALR anticodo 97.2 0.0014 2.9E-08 55.0 8.0 80 243-324 35-116 (119)
107 TIGR03838 queuosine_YadB gluta 97.2 0.0013 2.9E-08 63.4 8.5 142 2-173 60-236 (272)
108 KOG4426 Arginyl-tRNA synthetas 97.2 0.075 1.6E-06 53.6 20.3 179 139-324 418-653 (656)
109 KOG1195 Arginyl-tRNA synthetas 97.0 0.011 2.4E-07 60.5 13.3 159 164-324 365-564 (567)
110 cd07955 Anticodon_Ia_Cys_like 97.0 0.0036 7.9E-08 49.1 7.5 58 207-284 2-60 (81)
111 cd00805 TyrRS_core catalytic c 96.9 0.0014 3.1E-08 63.3 5.6 69 121-195 152-221 (269)
112 PF00749 tRNA-synt_1c: tRNA sy 96.6 0.01 2.2E-07 58.8 9.0 168 3-195 62-274 (314)
113 cd00395 Tyr_Trp_RS_core cataly 96.6 0.0032 6.9E-08 61.0 5.1 56 120-177 153-209 (273)
114 smart00836 DALR_1 DALR anticod 96.5 0.016 3.5E-07 48.7 8.8 80 243-324 38-119 (122)
115 TIGR00233 trpS tryptophanyl-tR 96.5 0.007 1.5E-07 60.2 7.1 79 110-195 129-217 (328)
116 PRK13354 tyrosyl-tRNA syntheta 96.5 0.0032 7E-08 64.4 4.7 73 119-196 185-258 (410)
117 PRK05912 tyrosyl-tRNA syntheta 96.4 0.0032 6.9E-08 64.5 4.0 73 119-196 187-260 (408)
118 KOG2007 Cysteinyl-tRNA synthet 96.3 0.0083 1.8E-07 61.3 6.3 51 347-397 526-576 (586)
119 PRK12556 tryptophanyl-tRNA syn 96.0 0.0044 9.6E-08 61.6 2.9 68 110-178 139-214 (332)
120 PF00579 tRNA-synt_1b: tRNA sy 95.6 0.0088 1.9E-07 58.5 2.9 70 108-179 137-212 (292)
121 PTZ00126 tyrosyl-tRNA syntheta 95.4 0.013 2.9E-07 59.3 3.8 78 111-195 201-282 (383)
122 PRK12282 tryptophanyl-tRNA syn 95.3 0.18 3.9E-06 50.3 11.4 79 111-195 133-220 (333)
123 PRK12284 tryptophanyl-tRNA syn 95.3 0.012 2.7E-07 60.0 3.0 80 110-195 138-226 (431)
124 PRK08560 tyrosyl-tRNA syntheta 94.8 0.021 4.6E-07 56.8 2.9 77 111-195 159-239 (329)
125 PRK12283 tryptophanyl-tRNA syn 94.6 0.024 5.2E-07 57.4 2.8 34 158-196 255-289 (398)
126 PRK12285 tryptophanyl-tRNA syn 94.6 0.02 4.4E-07 57.7 2.3 69 119-195 202-276 (368)
127 cd00806 TrpRS_core catalytic c 94.4 0.035 7.6E-07 54.0 3.5 79 110-195 127-216 (280)
128 PRK00927 tryptophanyl-tRNA syn 94.3 0.027 5.8E-07 56.2 2.4 80 110-195 128-220 (333)
129 COG0180 TrpS Tryptophanyl-tRNA 93.9 0.047 1E-06 53.6 3.2 68 110-179 135-212 (314)
130 COG0162 TyrS Tyrosyl-tRNA synt 93.3 0.085 1.8E-06 53.6 3.9 51 120-173 180-231 (401)
131 PTZ00348 tyrosyl-tRNA syntheta 92.1 0.12 2.6E-06 56.0 3.4 67 111-179 166-236 (682)
132 KOG1149 Glutamyl-tRNA syntheta 92.1 0.95 2.1E-05 46.0 9.3 102 100-212 220-330 (524)
133 TIGR00234 tyrS tyrosyl-tRNA sy 91.9 0.12 2.6E-06 52.4 2.9 65 112-179 169-234 (377)
134 PLN02486 aminoacyl-tRNA ligase 90.5 0.31 6.7E-06 49.5 4.2 64 124-195 223-290 (383)
135 PLN02886 aminoacyl-tRNA ligase 81.6 1.3 2.8E-05 45.1 3.2 34 110-144 174-207 (389)
136 KOG1147 Glutamyl-tRNA syntheta 81.0 1 2.2E-05 46.9 2.2 37 2-39 260-296 (712)
137 PRK00390 leuS leucyl-tRNA synt 58.9 8.5 0.00018 43.1 3.4 48 1-49 111-162 (805)
138 PF02151 UVR: UvrB/uvrC motif; 57.6 23 0.0005 22.9 3.9 30 349-378 4-33 (36)
139 KOG2144 Tyrosyl-tRNA synthetas 57.1 5.2 0.00011 38.7 1.1 50 120-174 177-230 (360)
140 TIGR00396 leuS_bact leucyl-tRN 47.7 18 0.00039 40.8 3.7 49 1-49 108-159 (842)
141 PRK01233 glyS glycyl-tRNA synt 46.3 1E+02 0.0023 33.9 9.0 48 242-291 602-649 (682)
142 KOG1148 Glutaminyl-tRNA synthe 44.4 20 0.00044 38.1 3.1 33 4-37 310-342 (764)
143 TIGR00211 glyS glycyl-tRNA syn 41.8 1.4E+02 0.003 33.0 9.2 48 242-291 612-659 (691)
144 PRK13208 valS valyl-tRNA synth 39.7 19 0.00041 40.4 2.3 49 1-50 130-182 (800)
145 PF09121 Tower: Tower; InterP 35.1 17 0.00036 24.4 0.6 31 382-412 1-31 (42)
146 KOG2623 Tyrosyl-tRNA synthetas 33.5 55 0.0012 33.3 4.1 57 118-178 225-285 (467)
147 COG3110 Uncharacterized protei 30.3 25 0.00055 32.2 1.1 18 158-175 30-47 (216)
148 PLN02563 aminoacyl-tRNA ligase 30.0 38 0.00082 38.8 2.7 48 2-49 191-241 (963)
149 smart00874 B5 tRNA synthetase 27.4 95 0.0021 22.9 3.7 32 368-399 21-52 (71)
150 KOG2713 Mitochondrial tryptoph 27.2 56 0.0012 31.8 2.9 105 99-208 134-253 (347)
151 PF08784 RPA_C: Replication pr 26.8 76 0.0016 25.4 3.3 20 19-38 79-98 (102)
152 COG4892 Predicted heme/steroid 26.8 58 0.0013 24.6 2.3 22 31-53 15-37 (81)
153 PF03295 Pox_TAA1: Poxvirus tr 24.7 1.1E+02 0.0025 22.4 3.4 35 10-47 16-51 (63)
154 PRK05743 ileS isoleucyl-tRNA s 22.1 72 0.0016 36.4 3.1 48 2-49 142-192 (912)
155 PF07393 Sec10: Exocyst comple 21.7 4.4E+02 0.0095 29.1 9.0 95 251-363 612-706 (710)
156 PF09275 Pertus-S4-tox: Pertus 21.6 1E+02 0.0022 24.0 2.8 42 124-165 50-92 (110)
157 PHA00663 hypothetical protein 21.1 91 0.002 22.7 2.3 31 382-414 20-52 (68)
No 1
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-111 Score=837.71 Aligned_cols=356 Identities=48% Similarity=0.827 Sum_probs=313.2
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee-CCcEEEeccCCCCccccccc-cchhhhCCCCccccccccCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQ-RLENNRAGERVAVDSRKRNP 78 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~-~~~vyf~v~~~~~Yg~ls~~-~~~~~~~g~~v~~~~~K~~p 78 (421)
|++|||+||+.+||||+||++||+||++|++|||||++ +|+|||||++|++||+||++ +++++..|+|++.+.+||||
T Consensus 100 ~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp 179 (464)
T COG0215 100 MDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNP 179 (464)
T ss_pred HHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCc
Confidence 68999999999999999999999999999999999999 79999999999999999966 88999999999999999999
Q ss_pred CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEee
Q 014658 79 ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHN 157 (421)
Q Consensus 79 ~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~ 157 (421)
.||+|||+++||||+|+||||+||||||||||||+.++||.++|||+||.||+||||+||+||++|+++ ++|+++|||+
T Consensus 180 ~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~ 259 (464)
T COG0215 180 LDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHN 259 (464)
T ss_pred hhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred eeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Q 014658 158 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG 237 (421)
Q Consensus 158 g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 237 (421)
|||+++|+|||||+||||++.|++++|++.++|||||++||+++++||++.|.++.+.+.+|++++..+........
T Consensus 260 G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~--- 336 (464)
T COG0215 260 GFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGDAE--- 336 (464)
T ss_pred ceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHhhccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999998876543211110
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHh
Q 014658 238 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLR 317 (421)
Q Consensus 238 ~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ 317 (421)
.. ...++..+|.++|+|||||+.|++. |+++++.+|..++.... ....++..+..++.
T Consensus 337 ----~~-----~~~~~~~~f~~al~DDfnt~~al~~-l~~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 394 (464)
T COG0215 337 ----LA-----DLKEFEARFREALDDDFNTPKALAV-LFELAKEINRLLEEGKS------------DAKAVLSALKALLA 394 (464)
T ss_pred ----cc-----hhHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHhhhhhcccc------------chHHHHHHHHHHHH
Confidence 00 3456677899999999999999999 99999999876654331 11122334444444
Q ss_pred Hhc-----cCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEE
Q 014658 318 ILG-----LLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWR 392 (421)
Q Consensus 318 ilG-----i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~ 392 (421)
+|| +.++. .. ......++.|++||++|.+||++|+|++||+||++|.++||.|+|+|+||+|+
T Consensus 395 ~lg~~~l~~~~~~-~~-----------~~~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi~leD~~~gt~w~ 462 (464)
T COG0215 395 ILGLKVLGLFPQS-GA-----------QEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDGTTWR 462 (464)
T ss_pred HhCchhhcccccc-cc-----------ccccchHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCCcEEEECCCCeEEE
Confidence 444 44431 00 01112467899999999999999999999999999999999999999999999
Q ss_pred e
Q 014658 393 P 393 (421)
Q Consensus 393 ~ 393 (421)
+
T Consensus 463 ~ 463 (464)
T COG0215 463 R 463 (464)
T ss_pred e
Confidence 7
No 2
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=6.3e-105 Score=820.68 Aligned_cols=391 Identities=64% Similarity=1.089 Sum_probs=330.1
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
|++|||.+|+++||||+||++|+++|++|++||+||+++|+|||||++|++||+||+++++++..|+||+.++.|+||.|
T Consensus 158 ~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~D 237 (557)
T PLN02946 158 MAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVDSRKKNPAD 237 (557)
T ss_pred HHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcccccCCccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred ccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeee
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV 160 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l 160 (421)
|||||++++|||+|+||||+||||||||||||+.+|||.++|||+||+||+||||+||+||++|+.+.+|+++|||+|||
T Consensus 238 FaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v 317 (557)
T PLN02946 238 FALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFV 317 (557)
T ss_pred cceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCCCCCceeeEeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Q 014658 161 TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240 (421)
Q Consensus 161 ~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 240 (421)
+++|+|||||+||+|++.|++++||+|++|||||+++|+++++||++.|.++.+.+.++++++.++...+..........
T Consensus 318 ~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~~~~~ 397 (557)
T PLN02946 318 TVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKD 397 (557)
T ss_pred EeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999998888888888777654432210000000
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 241 ~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
..+..+...+..+.+.|.++|+|||||+.|+.. |+++++.+|.+++.... ... ......+..+...+..++.+||
T Consensus 398 ~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~-l~~~vk~~N~~~~~~~~---~~~-~~~~~~l~~~~~~~~~~~~vLG 472 (557)
T PLN02946 398 SVPPDTLNCINKFHDEFVTSMSDDLHTPVALAA-LSEPLKTINDLLHTRKG---KKQ-EKRLESLAALEKKIRDVLSVLG 472 (557)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHHHHhhhccc---ccc-cchHHHHHHHHHHHHHHHHHcC
Confidence 112223345667788999999999999999999 99999999999865320 000 0012234455667888889999
Q ss_pred cCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEeCccc
Q 014658 321 LLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLV 397 (421)
Q Consensus 321 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~~~~~ 397 (421)
|... +....+++..........+.+++++.||++|++||++|||++||+||++|.++||.|+|||+||+|++..|.
T Consensus 473 l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~li~~R~~aR~~Kdf~~AD~IR~~L~~~Gi~l~Dt~~Gt~w~~~~~~ 548 (557)
T PLN02946 473 LMPT-SYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAIPL 548 (557)
T ss_pred CCch-hhhhhhhhhhhhhhhcccCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEECCCCceEEEcCCC
Confidence 9542 111111111111111122334579999999999999999999999999999999999999999999998665
No 3
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.6e-100 Score=786.63 Aligned_cols=356 Identities=46% Similarity=0.780 Sum_probs=310.3
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee-CCcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~-~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||.+|+++||||+||++|+++|++|++||+||++ +|+|||||++|++||+||+++++++..|+||+.+++|+||.
T Consensus 326 ~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~YG~LS~~~~~~l~~g~rve~d~~Krnp~ 405 (699)
T PRK14535 326 ADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPL 405 (699)
T ss_pred HHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccccccccCCChHHhcCCCccccccccCCcc
Confidence 57899999999999999999999999999999999987 68999999999999999999999999999999988999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-----------
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD----------- 148 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~----------- 148 (421)
||||||++++|||.|+||||+||||||||||||+.+|||.++|||+||.||+||||+||+||++|+.++
T Consensus 406 DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~ 485 (699)
T PRK14535 406 DFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHH 485 (699)
T ss_pred ccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred -----CCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Q 014658 149 -----SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTL 223 (421)
Q Consensus 149 -----~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l 223 (421)
+|+++|||+|||+++|+|||||+||+|+|.+++++||+|++|||+|+++|+++++||++.|.++.+.+.++++.+
T Consensus 486 ~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l 565 (699)
T PRK14535 486 GQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTL 565 (699)
T ss_pred cccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHH
Q 014658 224 QDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIE 303 (421)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~ 303 (421)
..+... . ......+..+.+.|.++|+||||++.|+.. |+++++.+|++.. .
T Consensus 566 ~~~~~~-~------------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~-L~~lvk~iN~~~~--~------------- 616 (699)
T PRK14535 566 KNTPAA-E------------FMLSENVNDYTRRFYAAMNDDFGTVEAVAV-LFELAGEVNKTND--A------------- 616 (699)
T ss_pred Hhhhhc-c------------chhhhhHHHHHHHHHHHHhhccChHHHHHH-HHHHHHHHHHHHH--H-------------
Confidence 654210 0 001123456778999999999999999999 9999999998631 0
Q ss_pred HHHHHHHHHHHHHhHhccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEE
Q 014658 304 SLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALM 383 (421)
Q Consensus 304 ~l~~~~~~l~~~l~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~ 383 (421)
.+...+..+..+|||... ...+.... . .....+.+++|+.||++|++||++|||++||+||++|.++||.|+
T Consensus 617 ---~~~~~l~~~~~vLGl~~~-~~~~~~~~---~-~~~~~~~~~~i~~Li~~R~~AR~~Kdfa~AD~IRd~L~~~GI~ve 688 (699)
T PRK14535 617 ---QLAGCLKALGGIIGLLQR-DPTEFLQG---G-AASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILE 688 (699)
T ss_pred ---HHHHHHHHHHhhcCCCcc-chhhhhhc---c-cccccCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEE
Confidence 012335567788998532 11111100 0 001122345799999999999999999999999999999999999
Q ss_pred ecCCCeEEEe
Q 014658 384 DMGKETIWRP 393 (421)
Q Consensus 384 D~~~Gt~W~~ 393 (421)
|||+||+|++
T Consensus 689 Dt~~Gt~W~~ 698 (699)
T PRK14535 689 DNAGGTTWRR 698 (699)
T ss_pred EcCCCceEee
Confidence 9999999986
No 4
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-98 Score=736.57 Aligned_cols=378 Identities=42% Similarity=0.653 Sum_probs=316.3
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCC-CccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-NYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~-~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||+|||+.||||+|||+||.||++||+||+||.++|+|||||.+|+ +||+|+++. +.+..|+.+..++.||+|.
T Consensus 139 M~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~-~~~~~gEg~l~ds~KR~p~ 217 (586)
T KOG2007|consen 139 MAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQR-KNLQEGEGVLSDSRKRSPA 217 (586)
T ss_pred HHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecccccchhhhhcCch-hhcccCcCccccccCCChh
Confidence 78999999999999999999999999999999999999999999999999 699999876 7788888888889999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeee
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNG 158 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g 158 (421)
||||||++|+|||+|+||||+||||||||||||+..+||..+|||+||.||.||||+||+||++|.+.. +|+|||+|+|
T Consensus 218 DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtG 297 (586)
T KOG2007|consen 218 DFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLHTG 297 (586)
T ss_pred hhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhcCCccceeEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999875 6999999999
Q ss_pred eeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Q 014658 159 HVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK 238 (421)
Q Consensus 159 ~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 238 (421)
||+++|+||||||+||||+++++++|+|+++|++||+++|+++++||.+.+..+......+.+++..+..+.........
T Consensus 298 hL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~~~~~ 377 (586)
T KOG2007|consen 298 HLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKPFEK 377 (586)
T ss_pred eeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 99999999999999999999999999999999999999999999999999988876544444444333332222111111
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhH
Q 014658 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRI 318 (421)
Q Consensus 239 ~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~i 318 (421)
....+.++...+......|+.+++|+|+++.++.. +.+++..+|.||....- +....+|.++..+|..++.+
T Consensus 378 ~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~-~~~lvs~~N~~i~~~~~-------~~~~~~L~~I~~yIt~~l~i 449 (586)
T KOG2007|consen 378 LSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA-IRELVSQGNAYIRESGE-------RPNSALLKAIASYITKLLKI 449 (586)
T ss_pred cChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH-HHHHHhhhhHHHHHhcc-------ccchHHHHHHHHHHHHHHHH
Confidence 23445678888999999999999999999999999 99999999999987651 11236677888999999999
Q ss_pred hccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHh----cCC---ChHHHHHHHHH-hHhcCcEEEecCCCeE
Q 014658 319 LGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAAR----KNK---DFSKSDQIRAD-LTRKGIALMDMGKETI 390 (421)
Q Consensus 319 lGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR----~~K---~f~~aD~IRd~-L~~~GI~l~D~~~Gt~ 390 (421)
||+........+ . ... ...-++.|++.|...| ..+ -.++||.||+. |.++|+.++|.+ |++
T Consensus 450 fG~~e~~g~q~~--------~-e~~-~m~~v~~L~~fr~~vRe~a~~~~~~~iL~l~d~lR~~~l~~~g~~led~~-g~~ 518 (586)
T KOG2007|consen 450 FGLSEGKGQQYV--------L-EAT-VMPYVQSLSEFREKVREVAREKKVPEILELCDTLRDSDLLELGVRLEDRK-GST 518 (586)
T ss_pred hCCCcccccccc--------c-ccc-hhHHHHHHHHHHHHHHHHHHhcchHHHHHHhHHHHHhhHHHhhhHHHhCC-chH
Confidence 999752111100 0 000 0122445555544444 332 35899999985 999999999999 999
Q ss_pred EEeCccch
Q 014658 391 WRPCVLVE 398 (421)
Q Consensus 391 W~~~~~~~ 398 (421)
|.+.+-++
T Consensus 519 lvk~v~~e 526 (586)
T KOG2007|consen 519 LVKAVDRE 526 (586)
T ss_pred HHHHhhhH
Confidence 98887664
No 5
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.2e-97 Score=753.20 Aligned_cols=367 Identities=36% Similarity=0.592 Sum_probs=312.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
|++|||.+|+++||||+||++|+++|++|++||+||+++|+|||||++|++||+||+++++++..|++|+.++.|+||.|
T Consensus 111 ~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~~~~~~l~~g~~v~~~~~K~np~D 190 (490)
T PRK14536 111 TARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIEHDTNKRNPHD 190 (490)
T ss_pred HHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcccchhhhcCCCHHHhhcCCcCCCCCCCCCchh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred cccccccc--CC-CCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEee
Q 014658 81 FALWKAAK--AG-EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHN 157 (421)
Q Consensus 81 F~LWk~~~--~~-~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~ 157 (421)
|||||+++ ++ +|+|+||||+||||||||||||+.+|||.++|||+||+||+||||+||+||++|+++.+|+++|||+
T Consensus 191 FaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~ 270 (490)
T PRK14536 191 FVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHH 270 (490)
T ss_pred chhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHhcCCCcceEEEEc
Confidence 99999865 44 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Q 014658 158 GHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH 236 (421)
Q Consensus 158 g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~ 236 (421)
|+|+++|+|||||+||+|++.|++++ |+++++|||||+++|+++++||++.|.++.+.+.+|++++..+..........
T Consensus 271 g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~ 350 (490)
T PRK14536 271 EFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGS 350 (490)
T ss_pred CEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999998 99999999999999999999999999999999999999887664322111000
Q ss_pred --C----C-CCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHH
Q 014658 237 --G----K-TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIE 309 (421)
Q Consensus 237 --~----~-~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~ 309 (421)
. . .......+...+..+...|.++|+|||||+.|++. |+++++.+|.- + ..+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~-l~~~~~~~n~~-----~--------------~~~~ 410 (490)
T PRK14536 351 VRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSE-LQKLVKDTSVP-----P--------------SLCL 410 (490)
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHhhhh-----H--------------HHHH
Confidence 0 0 00000111233556788999999999999999999 99999998851 0 0123
Q ss_pred HHHHHHHhHhccC-CCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCC
Q 014658 310 NEVKEVLRILGLL-PPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKE 388 (421)
Q Consensus 310 ~~l~~~l~ilGi~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~G 388 (421)
..+..+..+|||. .... .....+ .......+++++.||++|++||++|||++||+||++|.++||.|+|||+|
T Consensus 411 ~~~~~~~~vLGl~~~~~~-~~~~~~-----~~~~~~~~~~i~~li~~R~~aR~~kdf~~AD~iR~~L~~~Gi~l~Dt~~G 484 (490)
T PRK14536 411 SVLQAMDTVLGLGLIQEA-TASLSA-----QVPAGPSEEEIGQLIEARAHARQTKDFPLADEIRDKLKAEGIELEDTHLG 484 (490)
T ss_pred HHHHHHHhhcCcccccch-hhhhhh-----cccccCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEEcCCC
Confidence 4566677899984 2101 111000 00111224569999999999999999999999999999999999999999
Q ss_pred eEEEe
Q 014658 389 TIWRP 393 (421)
Q Consensus 389 t~W~~ 393 (421)
|+|++
T Consensus 485 t~w~~ 489 (490)
T PRK14536 485 TIWKR 489 (490)
T ss_pred ceEEe
Confidence 99986
No 6
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=9.6e-96 Score=752.13 Aligned_cols=362 Identities=48% Similarity=0.828 Sum_probs=325.5
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
|++|||.+|+.+||+|+|++.|+++|++|+++|+||+++|+|||||++|++||+||+++++++..|.||+.+++|+||+|
T Consensus 101 ~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~~~~~~~~~~~~~~K~~~~D 180 (463)
T PRK00260 101 MDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLD 180 (463)
T ss_pred HHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCHHHHhccCcCCcccCCCCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred ccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeee
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV 160 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l 160 (421)
|||||++++|+|+|+||||+||||||||||||+.++||.++|||+||+||+||||+|++||++|++++||+++|||+|||
T Consensus 181 F~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~g~p~~~~w~H~g~v 260 (463)
T PRK00260 181 FALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATGKPFANYWMHNGFV 260 (463)
T ss_pred cceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHHhcCCCcceEEEEccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred eeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Q 014658 161 TNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA 240 (421)
Q Consensus 161 ~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 240 (421)
+++|+|||||+||+|+|.|++++||+|++|||+++++|+++++|+++.+.++.+.+.++++.+.++.. .
T Consensus 261 ~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~~~~~~~~~-----------~ 329 (463)
T PRK00260 261 TVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYNALAETAL-----------G 329 (463)
T ss_pred ccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHHHHHHhhh-----------c
Confidence 99999999999999999999999999999999999999999999999999999999999998876531 1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 241 RINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 241 ~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
..+.++...+..+.+.|.++|+||||++.|++. |+++++.+|.|++... ...+..+...+..++.+||
T Consensus 330 ~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~-l~~lv~~~n~~~~~~~-----------~~~~~~~~~~~~~~~~ilG 397 (463)
T PRK00260 330 EDDEALLAELEEFKERFIEAMDDDFNTPEALAV-LFELAREINRALETKD-----------KEAAAALAALLRALADVLG 397 (463)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhhccc-----------HHHHHHHHHHHHHHHHhcC
Confidence 234677778889999999999889999999999 9999999999987631 1223445677888899999
Q ss_pred cCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 321 LLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 321 i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
|... ... . .. .......++.++.|+++|++||++|||++||+||++|.++||.|+|+|+||+|++
T Consensus 398 ~~~~-~~~-~---~~---~~~~~~~~~~~~~li~~R~~aR~~Kdf~~AD~IRd~L~~~Gi~v~D~~~G~~w~~ 462 (463)
T PRK00260 398 LEQD-EEA-L---FE---AAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTPDGTTWRR 462 (463)
T ss_pred CCch-hhh-h---hh---cccccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEcCCCceEEe
Confidence 9432 100 0 00 0011123567999999999999999999999999999999999999999999986
No 7
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=1.8e-96 Score=778.35 Aligned_cols=383 Identities=34% Similarity=0.564 Sum_probs=324.2
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCC----Ccccccc---ccchhhhCCCC-c-cc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP----NYGRLSG---QRLENNRAGER-V-AV 71 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~----~Yg~ls~---~~~~~~~~g~~-v-~~ 71 (421)
|++|||++|+++||||+||++|++||++|++|||||+++|+|||||++|+ .||+|++ ++++.+..|++ + +.
T Consensus 140 ~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg~L~p~~~~~~~~~~~g~~~l~~~ 219 (651)
T PTZ00399 140 MKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEGALGKV 219 (651)
T ss_pred HHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHHhhChhhcCCHHHHhcccCCcccc
Confidence 67999999999999999999999999999999999999999999999997 8999994 55667777876 5 34
Q ss_pred cccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CC
Q 014658 72 DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SN 150 (421)
Q Consensus 72 ~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~ 150 (421)
++.||||.||||||.++||||.|+||||.||||||||||+|+.++||.++|||+||.||+||||+||+||++|++++ +|
T Consensus 220 ~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~ 299 (651)
T PTZ00399 220 SGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQW 299 (651)
T ss_pred CcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014658 151 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230 (421)
Q Consensus 151 ~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~ 230 (421)
+++|+|+|||+++|+|||||+||||+|.|++++||+|++|||||+++|++|++||++.+.++.+...++++.+.++...+
T Consensus 300 v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l 379 (651)
T PTZ00399 300 VNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKL 379 (651)
T ss_pred CcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887777777666554433
Q ss_pred CCccc--CCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHH
Q 014658 231 SPFQE--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKI 308 (421)
Q Consensus 231 ~~~~~--~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~ 308 (421)
..... .......+.+++..+..+...|.++|+|+|+++.|++. |+++++.+|.|++... ..+...+.++
T Consensus 380 ~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~-L~eLv~~~N~yi~~~~--------~~~~~ll~~v 450 (651)
T PTZ00399 380 RESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQA-LQKLISATNTYLNSGE--------QPSAPLLRSV 450 (651)
T ss_pred hhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHhccc--------cchHHHHHHH
Confidence 22110 00112345678888999999999999889999999999 9999999999997311 1134456677
Q ss_pred HHHHHHHHhHhccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhc----C-----------CChHHHHHHHH
Q 014658 309 ENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARK----N-----------KDFSKSDQIRA 373 (421)
Q Consensus 309 ~~~l~~~l~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~----~-----------K~f~~aD~IRd 373 (421)
..++..++.||||.... ..+..-+... ........++.|++.|+++|+ + |+|++||+|||
T Consensus 451 ~~~l~~~l~ILGl~~~~---~m~~~~~~~~--~~~~~~~~i~~l~~~R~~~R~~a~~~~~~~~~~~~~~~~~~~~D~iRd 525 (651)
T PTZ00399 451 AQYVTKILSIFGLVEGS---DGLGSQGQNS--TSENFKPLLEALLRFRDEVRDAAKAEMKLISLDKKKKQLLQLCDKLRD 525 (651)
T ss_pred HHHHHHHHhcccCCcch---hhcccccccc--chhhhHHHHHHHHHHHHHHHHHHHhccccccchhhhhhHHHHHHHHHH
Confidence 88899999999995431 0000000000 000112458899999999994 4 88999999999
Q ss_pred -HhHhcCcEEEecCCC-eEEEeCccc
Q 014658 374 -DLTRKGIALMDMGKE-TIWRPCVLV 397 (421)
Q Consensus 374 -~L~~~GI~l~D~~~G-t~W~~~~~~ 397 (421)
.|.++||.|+|+++| |+|++.++.
T Consensus 526 ~~L~~~Gi~l~D~~~g~~~~~~~~~~ 551 (651)
T PTZ00399 526 EWLPNLGIRIEDKPDGPSVWKLDDKE 551 (651)
T ss_pred HHHHHCCCEEEEcCCCceEEEECCHH
Confidence 599999999999999 799998866
No 8
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-95 Score=740.28 Aligned_cols=366 Identities=31% Similarity=0.507 Sum_probs=308.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhh--CCCCccccccccCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNR--AGERVAVDSRKRNP 78 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~--~g~~v~~~~~K~~p 78 (421)
|++|||.+|+++||||+||++|+++|++|++||+||+++|+|||||++|++||+||+++++++. .|.+|+++..|+||
T Consensus 109 ~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~~~YG~ls~~~l~~l~~~~~~~v~~~~~K~np 188 (481)
T PRK14534 109 CKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSRVEIDKSKRNK 188 (481)
T ss_pred HHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccccchhhhcCCCHHHHhhhccCcCCcccCCCCc
Confidence 5789999999999999999999999999999999999999999999999999999999999987 89999998899999
Q ss_pred Ccccccccc---cCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEE
Q 014658 79 ADFALWKAA---KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 155 (421)
Q Consensus 79 ~DF~LWk~~---~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~ 155 (421)
.||||||.+ ++++|+|+||||.||||||||||||+.++||.++|||+||+||+||||+||+||++|+.+.+|+++||
T Consensus 189 ~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~ 268 (481)
T PRK14534 189 SDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFV 268 (481)
T ss_pred ccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHhhhcCCCcceEEE
Confidence 999999975 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 014658 156 HNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ 234 (421)
Q Consensus 156 h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~ 234 (421)
|+|||+++|+|||||+||+|++.|++++ |+++++|||+|++||+++++||++.|.++.+.+.++++++..+...+....
T Consensus 269 H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~ 348 (481)
T PRK14534 269 HGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFD 348 (481)
T ss_pred EecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999996 999999999999999999999999999999999999988876543332100
Q ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHH
Q 014658 235 EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKE 314 (421)
Q Consensus 235 ~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~ 314 (421)
..................+.+.|.++|+||||++.|++. |+++++.+|... .. ... +...+..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~-l~~~~k~~n~~~--~~----------~~~----~~~~~~~ 411 (481)
T PRK14534 349 LNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLAL-LWDIIKDDNLSF--LS----------KLR----LAFKFDE 411 (481)
T ss_pred ccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHHHhh--hh----------HHH----HHHHHHH
Confidence 000000000000012245667899999999999999999 999999999741 00 011 1223445
Q ss_pred HHhHhccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 315 VLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 315 ~l~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
++. ||+... . +.... ......++.|+.||++|++||++|||++||+||++|.++||.|+|||+||+|++
T Consensus 412 ~~~-lg~~~~--~---~~~~~----~~~~~~~~~i~~li~~R~~aR~~Kd~~~AD~iR~~L~~~Gi~l~Dt~~Gt~w~~ 480 (481)
T PRK14534 412 VLS-LGLREE--I---LREIE----NHRIVIDDNMKSLIEERRLAKCEKDFKRADEIREYFASKGFVLIDTEEGTKVKR 480 (481)
T ss_pred HHh-CCCCcc--c---chhhc----cccccCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHCCCEEEEcCCCCEEEe
Confidence 555 777322 0 00000 001112456999999999999999999999999999999999999999999986
No 9
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=8.1e-93 Score=728.98 Aligned_cols=365 Identities=46% Similarity=0.759 Sum_probs=313.6
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeC-CcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~-~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||.+|+.+||+|+|++.|+++|++|+++|+||+++ |+|||||++|++||+||+++++++..|.+|+.+++|+||.
T Consensus 99 l~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~~~~~~~~~~~~~~K~~p~ 178 (465)
T TIGR00435 99 MKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKL 178 (465)
T ss_pred HHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHHHHhcccccCcccccCCCC
Confidence 578999999999999999999999999999999999998 9999999999999999999999999999999989999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeee
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGH 159 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~ 159 (421)
||||||++++|+|+|+||||+||||||||||||+.++||.++|||+||+||+||||+|++||++|+++++|+++|||+||
T Consensus 179 DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~ 258 (465)
T TIGR00435 179 DFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGF 258 (465)
T ss_pred CceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcCCCCCcEEEEeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 014658 160 VTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT 239 (421)
Q Consensus 160 l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 239 (421)
|+++|+|||||+||+|+|.|++++||+|++|||+|+++|+++++||++.|.++.+.+.+|++.+..+.........
T Consensus 259 v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl~~~~~~~~~~~~~~~~---- 334 (465)
T TIGR00435 259 LMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYKALRVLDTTLAYSGN---- 334 (465)
T ss_pred EEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhccccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999998876433221000
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-HHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhH
Q 014658 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN-SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRI 318 (421)
Q Consensus 240 ~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N-~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~i 318 (421)
.+.........+.+.|.++|+|||||+.|++. |+++++.+| ..++. ..+..+...+..+..+
T Consensus 335 --~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~--------------~~~~~~~~~~~~l~~~ 397 (465)
T TIGR00435 335 --QSLNKFPDEKEFEARFVEAMDDDLNTANALAV-LFELAKSINLTFVSK--------------ADAALLIEHLIFLESR 397 (465)
T ss_pred --cccccchhHHHHHHHHHHHHhhccCHHHHHHH-HHHHHHHhhhhhcch--------------HHHHHHHHHHHHHHHh
Confidence 00001112345678899999999999999999 999999999 44321 0122345667777888
Q ss_pred hccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 319 LGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 319 lGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
||+...... ...+. . .. ......++.||++|++||++|||++||+||++|.++||.|+|+|+||+|++
T Consensus 398 lg~~~~~~~-~~~~~---~-~~--~~~~~~i~~l~~~R~~ar~~k~~~~aD~iR~~L~~~Gi~~~D~~~gt~w~~ 465 (465)
T TIGR00435 398 LGLLLGLPS-KPVQA---G-SN--DDELGEIEALIEERSIARKEKDFAKADEIRDELLKKGIVLEDTPQGTTWRR 465 (465)
T ss_pred cccCccccc-hhccc---c-cc--cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHCCCEEEECCCCceeeC
Confidence 998521000 00000 0 00 001135899999999999999999999999999999999999999999974
No 10
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=1.5e-85 Score=625.77 Aligned_cols=214 Identities=62% Similarity=1.085 Sum_probs=183.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeC-CcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~-~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||++|+++|||||||++||++|++|++||+||+++ |+|||||+++++||+||+++++++..|.+++.+.+|+||+
T Consensus 86 m~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~K~~p~ 165 (300)
T PF01406_consen 86 MKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYEKRNPR 165 (300)
T ss_dssp HHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TTSSSTT
T ss_pred HHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccccCCCc
Confidence 679999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeee
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGH 159 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~ 159 (421)
||||||.+++|||+|+||||+||||||||||||+.++||.++|||+||.||+||||+||+||++|+++++|+++|||+||
T Consensus 166 DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~ 245 (300)
T PF01406_consen 166 DFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYWMHNGH 245 (300)
T ss_dssp -EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--
T ss_pred ceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHH
Q 014658 160 VTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 160 l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~ 214 (421)
|+++|+|||||+||+|+++|++++|+++++|||||++||+++++||++.|.++.|
T Consensus 246 l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 246 LNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999998864
No 11
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.4e-84 Score=642.82 Aligned_cols=270 Identities=34% Similarity=0.577 Sum_probs=247.1
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCC----cEEEeccCCCCccccccccchhhhC--CCC-cccc-
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSGQRLENNRA--GER-VAVD- 72 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~----~vyf~v~~~~~Yg~ls~~~~~~~~~--g~~-v~~~- 72 (421)
|++|||++|+.+||||+||+.|+++|++|+++|+||++++ +|||||++|++||+||+++++++.. |.+ ++.+
T Consensus 87 ~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~~~~~~ 166 (384)
T PRK12418 87 MEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDR 166 (384)
T ss_pred HHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccccCccc
Confidence 5789999999999999999999999999999999999987 8999999999999999999999876 666 4554
Q ss_pred ccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCC
Q 014658 73 SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNV 151 (421)
Q Consensus 73 ~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~ 151 (421)
.+|+||+||||||++++|+|+|+||||+||||||||||||+.++||.++|||+||.||+||||+||+||++|++++ ||+
T Consensus 167 ~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~ 246 (384)
T PRK12418 167 PGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFA 246 (384)
T ss_pred ccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCCCCcc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999986 999
Q ss_pred cEEEeeeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014658 152 SYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230 (421)
Q Consensus 152 ~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~ 230 (421)
++|||+|+|.++|+|||||+||+|+|.++++. |+++++|||||+++|+++++||++.|.++.+.+.++++.+....
T Consensus 247 ~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~~--- 323 (384)
T PRK12418 247 RHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAALPA--- 323 (384)
T ss_pred eEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhccc---
Confidence 99999999999999999999999999998764 67779999999899999999999999999999888887764310
Q ss_pred CCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhc
Q 014658 231 SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 290 (421)
Q Consensus 231 ~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~ 290 (421)
. . .+.++.+.|.++|+||||+++|+.. |+++++.+|.|+...+
T Consensus 324 ---------~---~----~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 324 ---------G---P----DAADVVARVRAALADDLDTPGALAA-VDGWATDALEGGGDDA 366 (384)
T ss_pred ---------c---c----hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHhccCCCc
Confidence 0 0 2344578899999999999999999 9999999999987655
No 12
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=2.6e-83 Score=639.88 Aligned_cols=264 Identities=37% Similarity=0.634 Sum_probs=243.6
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCC----cEEEeccCCCCccccccccchhhhC--CCC-ccccc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSGQRLENNRA--GER-VAVDS 73 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~----~vyf~v~~~~~Yg~ls~~~~~~~~~--g~~-v~~~~ 73 (421)
|++|||.+|+.+||||+||++|+++|++|++||+||+++| +|||||++|++||+||+++++++.. +.+ ++.+.
T Consensus 114 ~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~ 193 (411)
T TIGR03447 114 MEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDR 193 (411)
T ss_pred HHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchhccccccCCCHHHHHhhhcccccCccc
Confidence 5789999999999999999999999999999999999876 8999999999999999999999876 566 76644
Q ss_pred -cccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCC
Q 014658 74 -RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNV 151 (421)
Q Consensus 74 -~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~ 151 (421)
+|+||+||||||++++|||+|+||||+||||||||||||+.++||.++|||+||+||+||||+|++||++|++++ ||+
T Consensus 194 ~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~ 273 (411)
T TIGR03447 194 PGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMA 273 (411)
T ss_pred ccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCCCCcc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999987 999
Q ss_pred cEEEeeeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014658 152 SYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230 (421)
Q Consensus 152 ~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~ 230 (421)
++|||+|+|+++|+|||||+||+|+|.++++. |++|++|||+++++|+++++||++.|.++.+.+.++++.+....
T Consensus 274 ~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~~--- 350 (411)
T TIGR03447 274 RHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLAEAEARLARWRAALAATD--- 350 (411)
T ss_pred eEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCccCHHHHHHHHHHHHHHHHHHhhcc---
Confidence 99999999999999999999999999999886 99999999999999999999999999999988888877765321
Q ss_pred CCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Q 014658 231 SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 284 (421)
Q Consensus 231 ~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~ 284 (421)
. . .+..+...|.++|+||||++.|++. |+++++.+|.
T Consensus 351 ---------~---~----~~~~~~~~~~~al~dDln~p~a~~~-l~~~~~~~n~ 387 (411)
T TIGR03447 351 ---------A---P----DATDLIARLRQHLANDLDTPAALAA-VDNWAAAALS 387 (411)
T ss_pred ---------c---c----hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHh
Confidence 0 0 1234567888999999999999999 9999998886
No 13
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.9e-44 Score=377.91 Aligned_cols=311 Identities=20% Similarity=0.210 Sum_probs=228.8
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--C------C-------------------C
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--S------P-------------------N 51 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--~------~-------------------~ 51 (421)
|++|||. ++.+++.|+ |++.|++++++|.++|++|++.++||||+++ + . +
T Consensus 80 l~~l~I~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~ 158 (511)
T PRK11893 80 WEALNIS-YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEES 158 (511)
T ss_pred HHHhCCC-cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCe
Confidence 4679997 788889988 9999999999999999999999999999987 3 1 1
Q ss_pred -cccccc--ccchhhhCC--CCccccc--------cccCCCcccccc-ccc-----CCCC-----cc-cCCCC----CCC
Q 014658 52 -YGRLSG--QRLENNRAG--ERVAVDS--------RKRNPADFALWK-AAK-----AGEP-----SW-DSPWG----PGR 102 (421)
Q Consensus 52 -Yg~ls~--~~~~~~~~g--~~v~~~~--------~K~~p~DF~LWk-~~~-----~~~~-----~w-~spwg----~gr 102 (421)
|++|+. ..+.+...+ .++..+. -|++..||++|+ ... |+++ .| ++.+| .|+
T Consensus 159 ~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~ 238 (511)
T PRK11893 159 YFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGY 238 (511)
T ss_pred EEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcc
Confidence 667665 223333222 1221121 256789999999 433 4442 24 44443 256
Q ss_pred CCCchhhHHH---HHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHH
Q 014658 103 PGWHIECSAM---SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179 (421)
Q Consensus 103 PgWhiecsam---~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~d 179 (421)
|+ +|++| ..+++ |.|+|++|+|++||||++|+||++|++.+.| +.|+|||||+++|+|||||+||+|+|.|
T Consensus 239 p~---~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~~G~KMSKS~GN~i~~~d 312 (511)
T PRK11893 239 PD---DEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTLDGEKMSKSLGNVIDPFD 312 (511)
T ss_pred cc---ccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEECCeeecccCCcEEcHHH
Confidence 66 89887 33455 7899999999999999999999999854444 7778889999999999999999999999
Q ss_pred HHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHH-----HHHHHHHHHHHH-HhcCCcccC-CCCCCCChHHHHHHH
Q 014658 180 ITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----VFYIYQTLQDCE-VALSPFQEH-GKTARINPAAEDCIN 251 (421)
Q Consensus 180 ll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~-----l~~l~~~l~~~~-~~~~~~~~~-~~~~~~d~~l~~~l~ 251 (421)
++++||+|++||||++. ++++|++|+++.+..+.+. ++|+++++..+. .......+. ......|++++..+.
T Consensus 313 ll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~ 392 (511)
T PRK11893 313 LVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLEAAA 392 (511)
T ss_pred HHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHHHHHH
Confidence 99999999999999996 8899999999999776542 444444433222 121111111 112345678889999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 252 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 252 ~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
.+.+.+.++| ++|+++.|++. |+++++.+|.|++..+||.... ........+..+...++.++.++.
T Consensus 393 ~~~~~v~~~~-~~~~~~~a~~~-l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~ 460 (511)
T PRK11893 393 ALLERVRAAM-DNLAFDKALEA-ILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQ 460 (511)
T ss_pred HHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999 9999999999999999995221 111222334444444444444444
No 14
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-44 Score=343.49 Aligned_cols=316 Identities=22% Similarity=0.201 Sum_probs=239.9
Q ss_pred CCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccc--c-cc----chhhhCCCCccccc
Q 014658 3 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLS--G-QR----LENNRAGERVAVDS 73 (421)
Q Consensus 3 ~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls--~-~~----~~~~~~g~~v~~~~ 73 (421)
.+||. -|.++|.|+ |+..+.+|+..+..+|++|..+...||+|+....|-+-. . -+ .-.+..|++|-.
T Consensus 120 ~~gi~-yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~-- 196 (578)
T KOG0436|consen 120 DAGIA-YTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVW-- 196 (578)
T ss_pred HhCcc-hhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeE--
Confidence 45675 589999998 999999999999999999999999999999988776521 1 11 112455665432
Q ss_pred cccCCCcccccccccCC---------------------------C----Cccc---CCCCCCCCC--------CchhhHH
Q 014658 74 RKRNPADFALWKAAKAG---------------------------E----PSWD---SPWGPGRPG--------WHIECSA 111 (421)
Q Consensus 74 ~K~~p~DF~LWk~~~~~---------------------------~----~~w~---spwg~grPg--------Whiecsa 111 (421)
.|+...-|.|=|..++- - ++.+ -.||...|| |......
T Consensus 197 ~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~n 276 (578)
T KOG0436|consen 197 RKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLN 276 (578)
T ss_pred ecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhh
Confidence 34444455554433221 0 1222 359999998 7643333
Q ss_pred HHHh--------------hcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCH
Q 014658 112 MSAH--------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTI 177 (421)
Q Consensus 112 m~~~--------------~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~ 177 (421)
+++- -+|+|..+|++||||++||++||||+++|++.++|.++++| |||+.+|.|||||+||||+|
T Consensus 277 YiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~vH-ghwt~ngmKMsKSLGNvvdP 355 (578)
T KOG0436|consen 277 YISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFVH-GHWTKNGMKMSKSLGNVVDP 355 (578)
T ss_pred HHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEEe-eeeeecceecchhhccccCH
Confidence 3321 13788999999999999999999999999999888888776 99999999999999999999
Q ss_pred HHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHH-----HHHHHHHHHHHHHHHhcCCcccC---CC--CCCCChHH
Q 014658 178 RQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSAS-----DAVFYIYQTLQDCEVALSPFQEH---GK--TARINPAA 246 (421)
Q Consensus 178 ~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~-----~~l~~l~~~l~~~~~~~~~~~~~---~~--~~~~d~~l 246 (421)
.+++++||+|++|||||+. .++.|.||+++.+.... +.+++|.||+..-.-.+.....+ .. .......+
T Consensus 356 ~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~l 435 (578)
T KOG0436|consen 356 FELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPL 435 (578)
T ss_pred HHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchH
Confidence 9999999999999999995 89999999999997765 35788888764311011111110 00 11233567
Q ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 247 EDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 247 ~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
.+.+..+.+.+.+.+ |+|.+++|+++ ++.+++..|.|++..+||+...+.+.....+..++..+.++++|+|++.+
T Consensus 436 v~~v~kl~ev~a~~~-d~f~~~~ale~-V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illq 511 (578)
T KOG0436|consen 436 VDTVEKLPEVAATNY-DNFSLYSALEA-VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQ 511 (578)
T ss_pred HHHHHHhHHHHHhhc-ccccHHHHHHH-HHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788899999999999 99999999999 99999999999999999974333344456677788889999999998665
No 15
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.2e-38 Score=335.78 Aligned_cols=285 Identities=16% Similarity=0.165 Sum_probs=210.7
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccch----hhhCCCCccccc-
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE----NNRAGERVAVDS- 73 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~----~~~~g~~v~~~~- 73 (421)
|++||| .+|.++|+|+ |...+.+++.+|.++|++|.....+|||+++-..|-. .++. ....|.+++..+
T Consensus 148 ~~~l~I-~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~---~~l~~~~~~~~~~~~~~~~~e 223 (616)
T PLN02224 148 WKDLDI-AYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDE---KELLENNCCPVHQMPCVARKE 223 (616)
T ss_pred HHHcCC-CCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCH---HHHcCCCCCCCCCCcceEEec
Confidence 357899 4799999998 9999999999999999999999999999987665432 1111 112344433211
Q ss_pred -----------------cccCCCcccc----------ccccc--CCCCccc-CCCCCCCCC--------CchhhHHHHHh
Q 014658 74 -----------------RKRNPADFAL----------WKAAK--AGEPSWD-SPWGPGRPG--------WHIECSAMSAH 115 (421)
Q Consensus 74 -----------------~K~~p~DF~L----------Wk~~~--~~~~~w~-spwg~grPg--------Whiecsam~~~ 115 (421)
...+| +|.. |-... +--++.+ ++||...|+ |.-....+...
T Consensus 224 ~~~ff~Ls~~~~~L~~~~~~~~-~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~ 302 (616)
T PLN02224 224 DNYFFALSKYQKPLEDILAQNP-RFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISA 302 (616)
T ss_pred ceEEEEhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHH
Confidence 12233 2221 11111 1113454 479988887 44322222220
Q ss_pred --------------hcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHH
Q 014658 116 --------------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQIT 181 (421)
Q Consensus 116 --------------~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll 181 (421)
.+++|.|||++||||++||+++|||++++++.+.|.++ ++||||+++|+|||||+||+|+|.+++
T Consensus 303 ~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i-~~~g~l~~eG~KMSKS~GN~i~p~e~l 381 (616)
T PLN02224 303 LTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMV-FGHGFLTKDGMKMGKSLGNTLEPFELV 381 (616)
T ss_pred hcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCcEE-EecccEecCCccccccCCccCCHHHHH
Confidence 12468899999999999999999999998865566666 555999999999999999999999999
Q ss_pred HhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH-----HHHHHHHHHH-HHHHhcCCcccCC-CCCCCChHHHHHHHHH
Q 014658 182 ERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQ-DCEVALSPFQEHG-KTARINPAAEDCINKL 253 (421)
Q Consensus 182 ~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~-----~l~~l~~~l~-~~~~~~~~~~~~~-~~~~~d~~l~~~l~~~ 253 (421)
++||+|++||||++. ++.+|.+|+++.+....+ .++|+++++. .+...+.+..... .....+.++++.++++
T Consensus 382 ~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~l 461 (616)
T PLN02224 382 QKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKL 461 (616)
T ss_pred HHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHH
Confidence 999999999999995 889999999999876643 4667766643 3333332211110 1123467899999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 254 RDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 254 ~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
...+.++| +++++++|+.. ++++++.+|+|++..+||.
T Consensus 462 i~~v~~~m-e~~~~~~Al~~-i~el~~~~N~Yi~~~~PW~ 499 (616)
T PLN02224 462 VEKAQTNY-ENLSLSSACEA-VLEIGNAGNTYMDQRAPWF 499 (616)
T ss_pred HHHHHHHH-HhccHHHHHHH-HHHHHHHHHHHHHhCCchh
Confidence 99999999 99999999999 9999999999999999995
No 16
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-38 Score=326.80 Aligned_cols=325 Identities=19% Similarity=0.171 Sum_probs=231.2
Q ss_pred CCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCc----cc---------------------
Q 014658 2 ADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY----GR--------------------- 54 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Y----g~--------------------- 54 (421)
++|||. -|.|.|.|+ |..-+.++.++|.++|++|.....++||+++-..| -.
T Consensus 85 ~~l~Is-fD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~ 163 (558)
T COG0143 85 KALNIS-FDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGR 163 (558)
T ss_pred HHhCCc-ccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccC
Confidence 578997 799999977 99999999999999999999999999999875432 11
Q ss_pred -cccccch---hhhCCCCccccc------------------cccCCCcccccccc--------cCCC----Ccc-cCCCC
Q 014658 55 -LSGQRLE---NNRAGERVAVDS------------------RKRNPADFALWKAA--------KAGE----PSW-DSPWG 99 (421)
Q Consensus 55 -ls~~~~~---~~~~g~~v~~~~------------------~K~~p~DF~LWk~~--------~~~~----~~w-~spwg 99 (421)
+++..+. ....|++.++.. .+.|| ||..-... +.|- ++. +..||
T Consensus 164 ~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WG 242 (558)
T COG0143 164 TLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIWPANRRNEVLNFLKEGLKDLSITRTDLDWG 242 (558)
T ss_pred cCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCc-cccCChHHHHHHHHHHHccCcccceecCCCCCC
Confidence 2222211 123343322111 24455 55442211 1222 344 56799
Q ss_pred CCCCC--------CchhhHHHHHh--hc---C--------CCce----EEeecccCcCcchHHHHHHHHhccCCCCCcEE
Q 014658 100 PGRPG--------WHIECSAMSAH--YL---S--------SKFD----IHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 154 (421)
Q Consensus 100 ~grPg--------Whiecsam~~~--~l---g--------~~~D----ih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~ 154 (421)
...|| |--.-..++.- ++ | ++-| +|++||||++||+++||||+++++.+.|.+++
T Consensus 243 ipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~ 322 (558)
T COG0143 243 IPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIF 322 (558)
T ss_pred ccCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCCEEE
Confidence 87776 65332222221 11 1 1344 99999999999999999999999988888886
Q ss_pred EeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH-----HHHHHHHHHH-HHH
Q 014658 155 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQ-DCE 227 (421)
Q Consensus 155 ~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~-----~l~~l~~~l~-~~~ 227 (421)
.| |||+++|+|||||+||+|+|.++++.||+|++||||++. +..+|.+||++.+.+..| .++|+.||.. ++.
T Consensus 323 ah-g~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~ 401 (558)
T COG0143 323 AH-GFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFIN 401 (558)
T ss_pred ee-eeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 999999999999999999999999999999999999995 999999999999999875 4677777743 344
Q ss_pred HhcCCcccCCC--CCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHH
Q 014658 228 VALSPFQEHGK--TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESL 305 (421)
Q Consensus 228 ~~~~~~~~~~~--~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l 305 (421)
+++.+..+... ..+.|++++..+..+...+.++| +.+.+++|+.. ++++++.+|+|++.++||...+. ...+.+
T Consensus 402 k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~-i~~l~~~~N~Yi~~~~PW~l~k~--~~~~~~ 477 (558)
T COG0143 402 KYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEE-IMALASRANKYIDEQAPWKLAKE--DKRERL 477 (558)
T ss_pred hccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHhhcCCCchhhcc--CcHHHH
Confidence 44443322111 11456788899999999999999 99999999999 99999999999999999972221 112333
Q ss_pred HHHHHHHHHHHhHhcc-----CCCCChHHHHHHH
Q 014658 306 RKIENEVKEVLRILGL-----LPPGAYSEVLQQL 334 (421)
Q Consensus 306 ~~~~~~l~~~l~ilGi-----~~~~~~~~~~~~~ 334 (421)
.+++..+.++++++++ +|. +...++.++
T Consensus 478 ~~vl~~~~~~~r~la~ll~P~mP~-~a~ki~~~L 510 (558)
T COG0143 478 ATVLYLALELVRVLAILLYPFMPE-TAEKIWDQL 510 (558)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCcc-hHHHHHHHh
Confidence 4444445555555553 454 444444444
No 17
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.5e-38 Score=336.28 Aligned_cols=284 Identities=18% Similarity=0.172 Sum_probs=211.2
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccc--cc--cccchhhhCCCCcccc--
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LS--GQRLENNRAGERVAVD-- 72 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~--ls--~~~~~~~~~g~~v~~~-- 72 (421)
|++|||. +|.++|.|+ |+..+.+++++|.++|++|.....++||+.+-..|.. |. +.+ ...|++++..
T Consensus 83 l~~lgI~-~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c---~~cg~~~e~~~~ 158 (648)
T PRK12267 83 WKKLDIS-YDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKC---PDCGREVELVKE 158 (648)
T ss_pred HHHcCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcC---CCCCCcCeEEec
Confidence 4689995 799999998 9999999999999999999999999999887654333 11 111 1234443211
Q ss_pred ----------------ccccCCCccc-----------cccccc--CCCCcccC-CCCCCCCC--------CchhhHHHHH
Q 014658 73 ----------------SRKRNPADFA-----------LWKAAK--AGEPSWDS-PWGPGRPG--------WHIECSAMSA 114 (421)
Q Consensus 73 ----------------~~K~~p~DF~-----------LWk~~~--~~~~~w~s-pwg~grPg--------Whiecsam~~ 114 (421)
-.+++| +|. -|-... +-.++.+. +||...|+ |.-....+..
T Consensus 159 ~~~f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s 237 (648)
T PRK12267 159 ESYFFRMSKYQDRLLEYYEENP-DFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYIT 237 (648)
T ss_pred ceEEEEcHHHHHHHHHHHhhCC-cccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHH
Confidence 123343 221 133211 11133443 79988886 5432222221
Q ss_pred hhcC------------CCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHH
Q 014658 115 HYLS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182 (421)
Q Consensus 115 ~~lg------------~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~ 182 (421)
. +| +|.|+|+.|+||++||..+||+++++++.++|.++++| |||+++|+|||||+||+|+|.++++
T Consensus 238 ~-~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~h-g~l~~eg~KMSKS~GN~i~p~d~l~ 315 (648)
T PRK12267 238 A-LGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAH-GWWLMKDGKMSKSKGNVVDPEELVD 315 (648)
T ss_pred H-cCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEec-ceEEECCceecccCCcccCHHHHHH
Confidence 1 11 26799999999999999999999999887788888665 9999999999999999999999999
Q ss_pred hcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH-----HHHHHHHHHHH-HHHhcCCccc-CCCCCCCChHHHHHHHHHH
Q 014658 183 RYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQD-CEVALSPFQE-HGKTARINPAAEDCINKLR 254 (421)
Q Consensus 183 ~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~-----~l~~l~~~l~~-~~~~~~~~~~-~~~~~~~d~~l~~~l~~~~ 254 (421)
+||+|++||||++. ++.+|.+||++.+....| .++|+++++.. +........+ .......|+++++.++++.
T Consensus 316 ~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~ 395 (648)
T PRK12267 316 RYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETL 395 (648)
T ss_pred HcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHH
Confidence 99999999999985 899999999999987654 35666555432 2222222111 1112346789999999999
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 255 DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 255 ~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
+.+.++| ++|++++|++. ++++++.+|.|++..+||.
T Consensus 396 ~~v~~~~-e~~~~~~al~~-i~~~~~~~N~Yi~~~kpW~ 432 (648)
T PRK12267 396 KNYEELM-EELQFSRALEE-VWKLISRANKYIDETAPWV 432 (648)
T ss_pred HHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHhCCChh
Confidence 9999999 89999999999 9999999999999999996
No 18
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-37 Score=333.68 Aligned_cols=327 Identities=18% Similarity=0.152 Sum_probs=219.8
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCC------------------cccc-----
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN------------------YGRL----- 55 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~------------------Yg~l----- 55 (421)
|++|||. ++.++|+|+ |++.|++++++|.++|++|...+.||||+.+-.. ||..
T Consensus 81 ~~~l~i~-~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg 159 (673)
T PRK00133 81 FAGFGIS-FDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCG 159 (673)
T ss_pred HHHhCCC-CCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcc
Confidence 4679997 688999984 9999999999999999999999999999876532 2321
Q ss_pred ---ccccchh---hhCCCCccccccccCCCcccc----------------cccc---------cCCC----CcccCCC-C
Q 014658 56 ---SGQRLEN---NRAGERVAVDSRKRNPADFAL----------------WKAA---------KAGE----PSWDSPW-G 99 (421)
Q Consensus 56 ---s~~~~~~---~~~g~~v~~~~~K~~p~DF~L----------------Wk~~---------~~~~----~~w~spw-g 99 (421)
.+.++.+ ...|++++...++.- =|-| |... +.|. ++.+..| |
T Consensus 160 ~~~~~~~l~~~~~~~~g~~~e~~~~~~~--f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~G 237 (673)
T PRK00133 160 ATYSPTELINPKSAISGATPVLKESEHF--FFKLPRFEEFLKEWITRSGELQPNVANKMKEWLEEGLQDWDISRDAPYFG 237 (673)
T ss_pred ccCChHhhcCCccccCCCcceEEecceE--EEEHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCcccceeeeCCccc
Confidence 1111111 113444432211110 0111 2110 0111 2335668 8
Q ss_pred CCCCC--------CchhhHHHHH---------------hhcC---CCceEEeecccCcCcchHHHHHHHHhccCCCCCcE
Q 014658 100 PGRPG--------WHIECSAMSA---------------HYLS---SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 153 (421)
Q Consensus 100 ~grPg--------Whiecsam~~---------------~~lg---~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~ 153 (421)
...|| |--....++. +++. .+-.+|++|+||++||.++|||++++++.++|.++
T Consensus 238 ipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP~~v 317 (673)
T PRK00133 238 FEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNV 317 (673)
T ss_pred eECCCCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCCCEE
Confidence 77775 4322211111 1221 12249999999999999999999999877777778
Q ss_pred EEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCC-CCcccCHHHHHHHHHH--HHHHHHHHHHHHHh
Q 014658 154 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASDA--VFYIYQTLQDCEVA 229 (421)
Q Consensus 154 ~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~-~d~~fs~e~l~~~~~~--l~~l~~~l~~~~~~ 229 (421)
++| |||+.+|+|||||+||+|+|.|++++||+|++||||++. +.. +|.+|+++.+....+. +.+++|.+.++..+
T Consensus 318 ~~h-g~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~ 396 (673)
T PRK00133 318 FAH-GFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGF 396 (673)
T ss_pred eee-ccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 999999999999999999999999999999999999986 777 8999999998765432 33444444333322
Q ss_pred cCCcccCC-CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-hhhhhHHHHHH
Q 014658 230 LSPFQEHG-KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLIESLRK 307 (421)
Q Consensus 230 ~~~~~~~~-~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~-~~~~~~~~l~~ 307 (421)
+.....+. .....+.+++..++++...+.++| ++|+++.|++. ++++++.+|+|++..+||.... ........++.
T Consensus 397 ~~k~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~ 474 (673)
T PRK00133 397 INKRFDGKLPDALADPELLEEFEAAAEKIAEAY-EAREFRKALRE-IMALADFANKYVDDNEPWKLAKQDGERLQAVCSV 474 (673)
T ss_pred HHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHH
Confidence 21111111 123468899999999999999999 89999999999 9999999999999999995221 11122334445
Q ss_pred HHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 308 IENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 308 ~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
++..++.++.+|. |+|. .++++++++
T Consensus 475 ~~~~l~~l~~lL~Pf~P~-~ae~i~~~L 501 (673)
T PRK00133 475 GLNLFRALAIYLKPVLPE-LAERAEAFL 501 (673)
T ss_pred HHHHHHHHHHHhhChhch-HHHHHHHHh
Confidence 5555555555555 3443 344444433
No 19
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=5.7e-37 Score=331.73 Aligned_cols=330 Identities=12% Similarity=0.061 Sum_probs=222.0
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccc--ccccc-----------------
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LSGQR----------------- 59 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~--ls~~~----------------- 59 (421)
+++|||. .|.+.|.|+ |...+..++++|.++|++|.....++||+.+-..|-. +.+.+
T Consensus 97 ~~~l~i~-~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~ 175 (801)
T PLN02610 97 YDWFDIS-FDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEK 175 (801)
T ss_pred HHHcCCc-cccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchhhh
Confidence 3578887 688988875 9999999999999999999999999999876432111 11110
Q ss_pred ------chhh------hCCCCcccccc------------------ccCC------Ccc---c-cccccc--CCCCcccCC
Q 014658 60 ------LENN------RAGERVAVDSR------------------KRNP------ADF---A-LWKAAK--AGEPSWDSP 97 (421)
Q Consensus 60 ------~~~~------~~g~~v~~~~~------------------K~~p------~DF---~-LWk~~~--~~~~~w~sp 97 (421)
..++ ..|.+++...+ +.++ ... + =|-... +-.++.+.+
T Consensus 176 Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~ 255 (801)
T PLN02610 176 CGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRDLK 255 (801)
T ss_pred ccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeeecC
Confidence 0111 12444332111 1111 000 0 022211 111345688
Q ss_pred CCCCCCC----------CchhhHHHHH----------hhcCCCce---EEeecccCcCcchHHHHHHHHhccCC--CCCc
Q 014658 98 WGPGRPG----------WHIECSAMSA----------HYLSSKFD---IHGGGIDLIFPHHENEIAQSCAACQD--SNVS 152 (421)
Q Consensus 98 wg~grPg----------Whiecsam~~----------~~lg~~~D---ih~gG~Dli~pH~~~~~a~~~a~~~~--~~~~ 152 (421)
||.-.|. |.-....++. +++..+-| +|++||||++||+++|||+++|++.+ +|.+
T Consensus 256 WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~ 335 (801)
T PLN02610 256 WGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMMKT 335 (801)
T ss_pred CcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCCCCE
Confidence 9987772 5432222221 23432335 89999999999999999999999865 5566
Q ss_pred EEEeeeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhc-CCCCCcccCHHHHHHHHHH-----HHHHHHHHHH
Q 014658 153 YWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----VFYIYQTLQD 225 (421)
Q Consensus 153 ~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~-----l~~l~~~l~~ 225 (421)
+++ ||||+++|+|||||+||+|+|.++++. ||+|++||||++. +..+|.+||++.+.+..|. ++||.+|+..
T Consensus 336 i~~-~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~ 414 (801)
T PLN02610 336 ISV-TEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLS 414 (801)
T ss_pred EEe-ccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 755 599999999999999999999999996 9999999999995 8999999999999988653 5666666433
Q ss_pred HHH-----hcCCcccCC---CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-
Q 014658 226 CEV-----ALSPFQEHG---KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ- 296 (421)
Q Consensus 226 ~~~-----~~~~~~~~~---~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~- 296 (421)
+.. ++.+..+.. .....|.++++.+.++.+.+.++| ++|+++.|++. ++++++.+|+||+..+||....
T Consensus 415 ~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~Al~~-I~~l~~~~NkYIe~~kPW~L~k~ 492 (801)
T PLN02610 415 FIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQGLKT-AMSISSEGNAYLQESQFWKLYKE 492 (801)
T ss_pred HHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhhhCC
Confidence 222 122211110 112346889999999999999999 99999999999 9999999999999999996221
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 297 QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 297 ~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
..+....+++.+++.++.++.+|- |+|. .+.+++++++
T Consensus 493 d~~~l~~vl~~~le~lr~la~LL~PfmP~-~aeeI~~~Lg 531 (801)
T PLN02610 493 DKPSCAIVVKTSVGLVYLLACLLEPFMPS-FSKEVLKQLN 531 (801)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCcccH-HHHHHHHHhC
Confidence 111222334444444444444444 3454 4555555543
No 20
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=1.9e-38 Score=312.46 Aligned_cols=193 Identities=20% Similarity=0.240 Sum_probs=163.8
Q ss_pred CCCCCCCCC---CccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccc--
Q 014658 1 MADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRK-- 75 (421)
Q Consensus 1 m~~Lnv~~p---~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K-- 75 (421)
|++|||..+ ...+...+|++.|++++++|.++|++|+..+.||++.+.|.+|++|+.+.++.+..+. +..+..|
T Consensus 92 l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~-~~p~~~~~~ 170 (312)
T cd00668 92 FRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGK-IVPEHVKNR 170 (312)
T ss_pred HHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCC-cCChHHHHH
Confidence 467899865 2344556799999999999999999999999999999999999999987777666554 3223344
Q ss_pred -----cCCCcccccccccCCCCcccCCCCCCCCCCchhh----HH---HHHhhcCC--------CceEEeecccCcCcch
Q 014658 76 -----RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIEC----SA---MSAHYLSS--------KFDIHGGGIDLIFPHH 135 (421)
Q Consensus 76 -----~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiec----sa---m~~~~lg~--------~~Dih~gG~Dli~pH~ 135 (421)
+++.||+|++ ++|||.++|||||+| +. ++..+++. |.|||++|+|++||||
T Consensus 171 ~~~~l~~~~d~~isR---------~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~ 241 (312)
T cd00668 171 MEAWLESLLDWAISR---------QRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWA 241 (312)
T ss_pred HHHHHhCCCCeEEec---------cCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEEEEecchhhhHH
Confidence 3777999865 579999999999999 53 44444443 7999999999999999
Q ss_pred HHHHHHHHhccCC-CCCcEEEeeeeeeeCC-cccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCccc
Q 014658 136 ENEIAQSCAACQD-SNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 204 (421)
Q Consensus 136 ~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G-~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~f 204 (421)
++++|+++++++. ++.++|+| |+++.+| +|||||+||+|+|.|++++||+|++||||++. ++++|.+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~~~ 312 (312)
T cd00668 242 NFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312 (312)
T ss_pred HHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCCCC
Confidence 9999999999886 89999988 9999877 99999999999999999999999999999986 69999886
No 21
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=2.3e-36 Score=317.94 Aligned_cols=288 Identities=17% Similarity=0.116 Sum_probs=204.4
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccc--ccccc-----------------
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LSGQR----------------- 59 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~--ls~~~----------------- 59 (421)
|++|||. ++.++|+++ |++.|++++++|.++|++|+.++.||||+.+-..+.. +.+.+
T Consensus 78 l~~LgI~-~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg 156 (530)
T TIGR00398 78 WKWLNIS-FDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCG 156 (530)
T ss_pred HHHhCCC-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhcc
Confidence 4689997 789999888 9999999999999999999999999999875432111 11100
Q ss_pred --c--hhh------hCCCCccccc------------------cccCCCcccccccc---------cCCC----CcccCC-
Q 014658 60 --L--ENN------RAGERVAVDS------------------RKRNPADFALWKAA---------KAGE----PSWDSP- 97 (421)
Q Consensus 60 --~--~~~------~~g~~v~~~~------------------~K~~p~DF~LWk~~---------~~~~----~~w~sp- 97 (421)
+ .++ ..|.+++... .+.+| ++..|... ..+. ++....
T Consensus 157 ~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~ 235 (530)
T TIGR00398 157 RHLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGSPASNVKNKAQNWLKGGLKDLAITRDLVY 235 (530)
T ss_pred ccCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHhCCCCCccccCcCCC
Confidence 0 011 1244443211 12222 12222110 0111 233455
Q ss_pred CCCCCCCCc--------hhhHHHHHh--h-cC--------CCce-----EEeecccCcCcchHHHHHHHHhccCCCCCcE
Q 014658 98 WGPGRPGWH--------IECSAMSAH--Y-LS--------SKFD-----IHGGGIDLIFPHHENEIAQSCAACQDSNVSY 153 (421)
Q Consensus 98 wg~grPgWh--------iecsam~~~--~-lg--------~~~D-----ih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~ 153 (421)
||.-.|+|. -.......- + .| +|.| +|++|+||++||+.+|||+++|++.++|.++
T Consensus 236 WGipvP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~ 315 (530)
T TIGR00398 236 WGIPVPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQV 315 (530)
T ss_pred CCeeCCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhCCCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEE
Confidence 998888762 100111110 0 01 2455 9999999999999999999999976677777
Q ss_pred EEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHh-
Q 014658 154 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVA- 229 (421)
Q Consensus 154 ~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~--~l~~l~~~l~~~~~~- 229 (421)
++||||+.+|+|||||+||+|+|.|++++||+|++|||+++. ++.+|++|+++.+....| .+..++|.+.++...
T Consensus 316 -~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~ 394 (530)
T TIGR00398 316 -FSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFI 394 (530)
T ss_pred -EeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555999999999999999999999999999999999999985 789999999999988753 234444444333222
Q ss_pred ---cCCccc-CCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 230 ---LSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 230 ---~~~~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
.....+ .......|.+++..+.++...+.++| ++|+++.|++. +++|++.+|.|++..+||.
T Consensus 395 ~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~ 460 (530)
T TIGR00398 395 KKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALRE-IMKLADRGNKYIDENKPWE 460 (530)
T ss_pred HHhcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHhcCCChh
Confidence 111111 11123467899999999999999999 99999999999 9999999999999999996
No 22
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=8.1e-37 Score=283.45 Aligned_cols=101 Identities=63% Similarity=1.113 Sum_probs=99.3
Q ss_pred CchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhc
Q 014658 105 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERY 184 (421)
Q Consensus 105 Whiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~y 184 (421)
||||||||+.++||.++|||+||+||+||||+|++||+.|++++||+++|+|.|+|.++|+|||||+||+|+|.|++++|
T Consensus 113 Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~ 192 (213)
T cd00672 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKY 192 (213)
T ss_pred hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHc
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CchHHHHHHhhcCCCCCcccC
Q 014658 185 HPLALRHFLISAHYRSPLNYS 205 (421)
Q Consensus 185 g~D~lR~~ll~~~~~~d~~fs 205 (421)
|+|++|||+++.+|+++++|+
T Consensus 193 ~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 193 DPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred CHHHHHHHHHhCCcCCCCCCC
Confidence 999999999999999999996
No 23
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.8e-34 Score=305.22 Aligned_cols=316 Identities=15% Similarity=0.106 Sum_probs=209.5
Q ss_pred CCCCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCC----C--------------ccccc----
Q 014658 1 MADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP----N--------------YGRLS---- 56 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t--~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~----~--------------Yg~ls---- 56 (421)
|++|||. ++.++|+| +|++.+++++++|.++|++|..++.||||+.+-. . ||...
T Consensus 83 ~~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg 161 (556)
T PRK12268 83 FKKLGIS-YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCG 161 (556)
T ss_pred HHHcCCc-CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhcc
Confidence 4689995 79999999 8999999999999999999999999999986542 1 23210
Q ss_pred ----cccchh---hhCCCCcccccc------------------cc---CCCc----cccccccc--CCCCcccCCCCCCC
Q 014658 57 ----GQRLEN---NRAGERVAVDSR------------------KR---NPAD----FALWKAAK--AGEPSWDSPWGPGR 102 (421)
Q Consensus 57 ----~~~~~~---~~~g~~v~~~~~------------------K~---~p~D----F~LWk~~~--~~~~~w~spwg~gr 102 (421)
..++.+ ...|+.++.... ++ -|.. +-=|-... +--++....||...
T Consensus 162 ~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipi 241 (556)
T PRK12268 162 ALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPV 241 (556)
T ss_pred ccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeC
Confidence 000000 012232221110 00 0000 00011100 00122345588777
Q ss_pred C--C--------CchhhHH-------HH---------Hhhc--CCCceEEeecccCcCcchHHHHHHHHhcc--CCCCCc
Q 014658 103 P--G--------WHIECSA-------MS---------AHYL--SSKFDIHGGGIDLIFPHHENEIAQSCAAC--QDSNVS 152 (421)
Q Consensus 103 P--g--------Whiecsa-------m~---------~~~l--g~~~Dih~gG~Dli~pH~~~~~a~~~a~~--~~~~~~ 152 (421)
| + |--.... .. ..++ ..+.++|+.|+|+++||..++|+++++.+ .+.|.+
T Consensus 242 P~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~ 321 (556)
T PRK12268 242 PWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDE 321 (556)
T ss_pred CCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCCCE
Confidence 7 2 2110101 11 1122 22567999999999999999999999987 444556
Q ss_pred EEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH-----HHHHHHHHHHH-
Q 014658 153 YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQD- 225 (421)
Q Consensus 153 ~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~-----~l~~l~~~l~~- 225 (421)
+ ++||||+++|+|||||+||+|+|.|++++||+|++|||+++. +..+|++|+++.+....+ .+.|+.+++..
T Consensus 322 v-~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~ 400 (556)
T PRK12268 322 I-VSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSF 400 (556)
T ss_pred e-eccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHH
Confidence 6 566999999999999999999999999999999999999986 788999999999876432 23444443322
Q ss_pred HHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-hhhhhHHH
Q 014658 226 CEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLIES 304 (421)
Q Consensus 226 ~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~-~~~~~~~~ 304 (421)
+................|+++++.++.+...+.++| ++|+++.|++. +++|++.+|+|++..+||.... ........
T Consensus 401 ~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~ 478 (556)
T PRK12268 401 IEKYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEE-IMELAREANKYLDEKAPWKLAKTDRERAATV 478 (556)
T ss_pred HHHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHcCCChhhhcCCHHHHHHH
Confidence 222111111111224568999999999999999999 99999999999 9999999999999999995211 11112233
Q ss_pred HHHHHHHHHHHHhHhc
Q 014658 305 LRKIENEVKEVLRILG 320 (421)
Q Consensus 305 l~~~~~~l~~~l~ilG 320 (421)
++.++.+++.++.+|.
T Consensus 479 l~~~~~~l~~~~~lL~ 494 (556)
T PRK12268 479 LYTALNLVRLLAVLLY 494 (556)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444455555555555
No 24
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=99.97 E-value=5.3e-30 Score=283.76 Aligned_cols=201 Identities=17% Similarity=0.137 Sum_probs=162.0
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 196 (421)
+|.|+|++|+||+|||+.||++++.|+++ .+|++.|+|||||+.+|+|||||+||||+|.+++++||+|++||||+++
T Consensus 572 yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~ 651 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAA 651 (938)
T ss_pred CCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 59999999999999999999999988876 4677788999999999999999999999999999999999999999996
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHH-HHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL-TGAF 275 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al-~~~l 275 (421)
++++|++|+++.+.++.+.+.+++|.+.++....... ........|++++..++.+...+.++| ++|+++.|+ .. +
T Consensus 652 ~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~-~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~-l 728 (938)
T TIGR00395 652 ETVQDADWKESEVEGTILRLERLYEFAEEITKESNLE-TGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYA-L 728 (938)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHH-H
Confidence 9999999999999999999999999887654432210 011123467899999999999999999 899999999 77 9
Q ss_pred HHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 276 QDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 276 ~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
+++++.+|.|+...++ . .. ..+..++..++.+|. |+|- ..+++++.+
T Consensus 729 ~~~~~~~n~Yl~~~~~----~----~~---~~l~~~l~~~~~LLaP~~P~-~aEeiw~~L 776 (938)
T TIGR00395 729 FDLQADVDWYRRRGGV----N----HK---DVLARYLETWIKLLAPFAPH-FAEEMWEEV 776 (938)
T ss_pred HHHHHHHHHHHHhCcc----h----HH---HHHHHHHHHHHHHhcCcccH-HHHHHHHHc
Confidence 9999999999875321 0 11 124456666666666 3444 455555555
No 25
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=99.97 E-value=3.2e-30 Score=284.66 Aligned_cols=236 Identities=21% Similarity=0.259 Sum_probs=179.2
Q ss_pred cc-cCCC-CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccc
Q 014658 93 SW-DSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMS 168 (421)
Q Consensus 93 ~w-~spw-g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMS 168 (421)
.| +|.+ .....||.-+. .....++ |.|+|++|+||+|||+.++++++.+++++ ||.++++| |||+. +|+|||
T Consensus 452 tWFdS~l~~~s~~g~p~~~-~~~~~~~--P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~h-G~v~d~~G~KMS 527 (861)
T TIGR00422 452 TWFSSSLWPFSTLGWPDET-KDLKKFY--PTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIH-GLVRDEQGRKMS 527 (861)
T ss_pred ceeccchHHHHHhCCCCCh-HHHhhcC--CcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEe-eEEECCCCCCCC
Confidence 35 3433 34445675433 1222333 89999999999999999999999999875 77999887 99996 999999
Q ss_pred cccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--c--CCCCCCCC
Q 014658 169 KSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ--E--HGKTARIN 243 (421)
Q Consensus 169 KSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~--~--~~~~~~~d 243 (421)
||+||+|+|.+++++||+|++||||++. +.++|++|+++.+....+.+.+|+|..+++...+.... . .......|
T Consensus 528 KS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~D 607 (861)
T TIGR00422 528 KSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLAD 607 (861)
T ss_pred cCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCHHH
Confidence 9999999999999999999999999986 56999999999999888888899997665543332211 0 01123467
Q ss_pred hHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-
Q 014658 244 PAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG- 320 (421)
Q Consensus 244 ~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG- 320 (421)
+|++..++.+...+.++| ++|+++.|++. +++|+ ..+|.|++..+||............+.++..++..++.+|.
T Consensus 608 ~wil~~l~~~~~~v~~~~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~lL~P 685 (861)
T TIGR00422 608 RWILSKLNRTIKEVRKAL-DKYRFAEAAKA-LYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARDTLYYVLDKALRLLHP 685 (861)
T ss_pred HHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999 99999999999 99997 78999999999984211111223344555666667777777
Q ss_pred cCCCCChHHHHHHHH
Q 014658 321 LLPPGAYSEVLQQLK 335 (421)
Q Consensus 321 i~~~~~~~~~~~~~~ 335 (421)
|+|- .++++++.+.
T Consensus 686 f~P~-itEelw~~L~ 699 (861)
T TIGR00422 686 FMPF-ITEEIWQHFK 699 (861)
T ss_pred hhhH-HHHHHHHhCc
Confidence 3444 4555655553
No 26
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.97 E-value=4.2e-31 Score=260.88 Aligned_cols=200 Identities=22% Similarity=0.169 Sum_probs=147.6
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccc----------cccc--cchhhhCC
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR----------LSGQ--RLENNRAG 66 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~----------ls~~--~~~~~~~g 66 (421)
|++|||. ++.+++.|+ |++.+.+++++|.++|++|+....++||+.+-..+.. |+.- .+.+....
T Consensus 79 l~~LgI~-~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~ 157 (319)
T cd00814 79 FKWLNIS-FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEK 157 (319)
T ss_pred HHHcCCc-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHh
Confidence 4689996 799999988 9999999999999999999987555555544322211 1110 00000000
Q ss_pred CC---c------c----cccccc---CCCcccccccccCCCC-----cc-cCCCC----CCCCCCchhhHHHHHhhcCCC
Q 014658 67 ER---V------A----VDSRKR---NPADFALWKAAKAGEP-----SW-DSPWG----PGRPGWHIECSAMSAHYLSSK 120 (421)
Q Consensus 67 ~~---v------~----~~~~K~---~p~DF~LWk~~~~~~~-----~w-~spwg----~grPgWhiecsam~~~~lg~~ 120 (421)
.. . . ++...+ -.+|++.|.-.-|+.+ .| +++|| .|+|+|+.+|+.+ -..+.+
T Consensus 158 ~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~--~~~~~~ 235 (319)
T cd00814 158 NPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWW--WKDGWP 235 (319)
T ss_pred CCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhh--hhcCCC
Confidence 00 0 0 111122 3456767876555554 25 79888 7899999888622 234668
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCC
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR 199 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~ 199 (421)
.+||++|+|+++||+++|||++++++.+++. .+++|||++++|+|||||+||+|+|.|+++.||+|++|||+++. +..
T Consensus 236 ~~v~~~G~D~~~fh~~~~pa~l~~~~~~~~~-~~~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~ 314 (319)
T cd00814 236 ELVHFIGKDIIRFHAIYWPAMLLGAGLPLPT-RIVAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEG 314 (319)
T ss_pred ceEEEEeechhhhhHHHHHHHHHhCCCCCCc-EeeeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCC
Confidence 9999999999999999999999998754454 55777999999999999999999999999999999999999995 888
Q ss_pred CCccc
Q 014658 200 SPLNY 204 (421)
Q Consensus 200 ~d~~f 204 (421)
+|.+|
T Consensus 315 ~d~~f 319 (319)
T cd00814 315 KDSDF 319 (319)
T ss_pred CCCCC
Confidence 99887
No 27
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.6e-29 Score=268.73 Aligned_cols=245 Identities=18% Similarity=0.217 Sum_probs=195.6
Q ss_pred cccccccCCCCcccCC--CCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeee
Q 014658 82 ALWKAAKAGEPSWDSP--WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNG 158 (421)
Q Consensus 82 ~LWk~~~~~~~~w~sp--wg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g 158 (421)
..|....+.-..|-|+ |...--||+-+ +....+|+ |.|+.+.|-||||||..+.+.++..+.++ ||..+++| |
T Consensus 441 ~~~~qd~DVLDTWFSS~LwPfstlgWp~~-t~~l~~fy--Pt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ih-G 516 (877)
T COG0525 441 EELEQDEDVLDTWFSSSLWPFSTLGWPEE-TPDLKKFY--PTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIH-G 516 (877)
T ss_pred hcccCCcchhhhhhhcccccccccCCCCc-chHHHhcC--CCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEe-e
Confidence 3455554444578755 88999999977 44445554 89999999999999999999999999885 99999887 9
Q ss_pred eee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Q 014658 159 HVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH 236 (421)
Q Consensus 159 ~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~ 236 (421)
+|. -+|+|||||+||||+|.|++++||+|++||++.+. +.++|++|+++.++...|.+.++||..+++...+......
T Consensus 517 LVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~ 596 (877)
T COG0525 517 LVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPD 596 (877)
T ss_pred eEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcc
Confidence 998 58999999999999999999999999999999996 9999999999999999999999999988776544332211
Q ss_pred ----CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH--HHHHHHhhhcccCchhhhhhhHHHHHHHHH
Q 014658 237 ----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQPKQQQLSLIESLRKIEN 310 (421)
Q Consensus 237 ----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~--~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~ 310 (421)
......|+|++.+++++...++++| ++|+|..|.+. |++|+. .|+.|+.-.+|-.-.. .........++..
T Consensus 597 ~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~-ly~F~W~~fcD~YlEl~K~~l~~~-~~~~~~a~~tL~~ 673 (877)
T COG0525 597 DLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARA-LYEFIWNDFCDWYLELAKPRLYGG-EEEKRAARATLYY 673 (877)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHhHHHHHHHHHHHhhhhhcCc-HHHHHHHHHHHHH
Confidence 1113678999999999999999999 99999999999 999995 7899999988732111 1222345566677
Q ss_pred HHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 311 EVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 311 ~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
++..++++|- |+|- -++++.+.+
T Consensus 674 vl~~~lrLLhPfmPf-iTEei~q~l 697 (877)
T COG0525 674 VLDTLLRLLHPFMPF-ITEEIWQKL 697 (877)
T ss_pred HHHHHHHHhCCCCcc-chHHHHHhc
Confidence 8888888888 4553 344555544
No 28
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=4e-29 Score=275.69 Aligned_cols=198 Identities=19% Similarity=0.201 Sum_probs=158.5
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 196 (421)
+|+|+|++|+||++||+.+++.++.++++. ||++-+++||||+.+|+|||||+||+|+|.+++++||+|++||||+++
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~ 608 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSA 608 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCC
Confidence 599999999999999999999999998874 675555778999999999999999999999999999999999999985
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 276 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~ 276 (421)
++++|++|+++.+..+.+.+.++++.+.++..... .......|+|+++.++.+.+.+.++| ++|+++.|+.. ++
T Consensus 609 ~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~----~~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~-i~ 682 (897)
T PRK12300 609 ELLQDADWREKEVESVRRQLERFYELAKELIEIGG----EEELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQE-AF 682 (897)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC----ccccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HH
Confidence 99999999999999998888888887765432211 11123468899999999999999999 89999999988 64
Q ss_pred -HHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 277 -DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 277 -~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
.+.+.+|.|++..+| .....+...+..++.+|. |+|- ..+++++.+
T Consensus 683 ~~l~~~~n~Yi~~~k~-----------~~~~~l~~~l~~~~~lLaPf~P~-~aEeiw~~L 730 (897)
T PRK12300 683 YELLNDLRWYLRRVGE-----------ANNKVLREVLEIWIRLLAPFTPH-LAEELWHKL 730 (897)
T ss_pred HHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHc
Confidence 777899999987664 112234455555566666 3343 345555544
No 29
>PLN02843 isoleucyl-tRNA synthetase
Probab=99.96 E-value=7.8e-29 Score=274.57 Aligned_cols=215 Identities=22% Similarity=0.211 Sum_probs=168.6
Q ss_pred cCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHH---------hcC
Q 014658 117 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE---------RYH 185 (421)
Q Consensus 117 lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~---------~yg 185 (421)
+.+|.|+|+.|+||+|+|+...+.++.++.+. ||+++|+| ||++. +|+|||||+||||+|.++++ +||
T Consensus 561 ~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yG 639 (974)
T PLN02843 561 LSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYG 639 (974)
T ss_pred cCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccC
Confidence 35799999999999998888888888888876 88999998 88875 89999999999999999999 799
Q ss_pred chHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC-----CCCCCCChHHHHHHHHHHHHHHHH
Q 014658 186 PLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHAR 260 (421)
Q Consensus 186 ~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~a 260 (421)
+|++|||+++.+|++|++|+.+.+.++.+.+.+|+|+++++.+.+..+... ......|+|++++++.+.+++.++
T Consensus 640 aD~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~a 719 (974)
T PLN02843 640 ADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEES 719 (974)
T ss_pred hHHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888899999988877665543211 111246899999999999999999
Q ss_pred HHhccChHHHHHHHHHHH--HHHHHHHHhhhcccC--chhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 261 MSDDLNTSHILTGAFQDA--LKFINSSLNMLKKKQ--PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 261 ~~dd~~~~~Al~~~l~~~--~~~~N~yi~~~~pw~--~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
| ++|+|++|++. |++| ...+|.|++..+||. .......+...-..+...+..++.+|. |+|- .++++++.+.
T Consensus 720 y-e~y~f~~A~~~-i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf-~aEEiw~~L~ 796 (974)
T PLN02843 720 Y-DNYQFFKIFQI-LQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPH-LAEDAWQNLP 796 (974)
T ss_pred H-HccCHHHHHHH-HHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhcc
Confidence 9 99999999999 9988 569999999999974 111111111111122333444455555 4454 4566666553
No 30
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.2e-28 Score=272.16 Aligned_cols=210 Identities=16% Similarity=0.191 Sum_probs=170.3
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|++|+||+|||....++++.++.++ ||.++++| |+|+ .+|+|||||+||||+|.|++++||+|++|||+++.
T Consensus 472 ~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~h-G~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~ 550 (874)
T PRK05729 472 YPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAAL 550 (874)
T ss_pred CCcccccccccccchHHHHHHHHHHHhcCCCchhheEEe-eeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhC
Confidence 489999999999999999999999888776 77999888 9998 69999999999999999999999999999999986
Q ss_pred -CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC-----CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHH
Q 014658 197 -HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 270 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~A 270 (421)
++++|++|+++.+....+.+++|||..+++...+...... ......|+|++.+++.+...+.++| ++|+++.|
T Consensus 551 ~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a 629 (874)
T PRK05729 551 ASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEA 629 (874)
T ss_pred CCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHH
Confidence 8999999999999988888889999776654332222111 1123457899999999999999999 89999999
Q ss_pred HHHHHHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 271 LTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 271 l~~~l~~~~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
++. |++|+ ..+|.|++..+||.. .. .+...+..+..++..++.+|. |+|- .++++++.+.
T Consensus 630 ~~~-l~~f~~~~~~~~Yle~~k~~l~--~~-~~~~~~~~l~~~l~~~~~lL~Pf~Pf-itEelw~~l~ 692 (874)
T PRK05729 630 ARA-LYEFIWNEFCDWYLELAKPVLQ--EA-AKRATRATLAYVLEQILRLLHPFMPF-ITEELWQKLA 692 (874)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhh--hh-HHHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHhcc
Confidence 999 99998 589999999999842 11 123344556677777777777 4554 4666666654
No 31
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.2e-28 Score=272.30 Aligned_cols=212 Identities=18% Similarity=0.207 Sum_probs=160.4
Q ss_pred CCCceEEeecccCcCc--chHHHHHHHHhccCCCCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHh
Q 014658 118 SSKFDIHGGGIDLIFP--HHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194 (421)
Q Consensus 118 g~~~Dih~gG~Dli~p--H~~~~~a~~~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll 194 (421)
.+|.|+|++|+||+|+ |+.+++++.+ .+..||+++++| |||+. +|+|||||+||||+|.+++++||+|++|||++
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~ll 620 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTH-GFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWVA 620 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-cCCCccceeEEe-eeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHHH
Confidence 4699999999999985 5666666654 333588888666 99996 99999999999999999999999999999999
Q ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccChH
Q 014658 195 SAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTS 268 (421)
Q Consensus 195 ~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~ 268 (421)
++++++|++||++.+.+..+.+.+|+|+++++.+.+..+... ......|++++.+++++.+.+.++| ++|+|+
T Consensus 621 ~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~-e~~~f~ 699 (912)
T PRK05743 621 STDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAY-ENYDFH 699 (912)
T ss_pred hcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 989999999999999988777888899888776655432210 0123468999999999999999999 999999
Q ss_pred HHHHHHHHHHH--HHHHHHHhhhccc--CchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 269 HILTGAFQDAL--KFINSSLNMLKKK--QPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 269 ~Al~~~l~~~~--~~~N~yi~~~~pw--~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
+|++. |++|+ ..+|.|++..+|| ........+......+...+..++.+|. |+|- ..+++++.+
T Consensus 700 ~a~~~-l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~-~aEelw~~l 768 (912)
T PRK05743 700 KVYQK-LHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSF-TAEEIWQYL 768 (912)
T ss_pred HHHHH-HHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHhc
Confidence 99999 99999 4679999999985 2111111111121223344444556666 3444 455666655
No 32
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.5e-28 Score=269.54 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=168.5
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|++|+|++++|..++++++.++.+. ||.++++| |+|+ .+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 485 ~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~ 563 (800)
T PRK13208 485 FPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMIS-GMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASA 563 (800)
T ss_pred CCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEe-eEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcC
Confidence 489999999999999999999999998875 78999765 9998 59999999999999999999999999999999977
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPF--QEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 274 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~--~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~ 274 (421)
++++|++||++.+..+.+.+.+++|.++.+....... .........|++++..++.+.+++.++| ++|+++.|++.
T Consensus 564 ~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~- 641 (800)
T PRK13208 564 RLGSDTPFDEKQVKIGRRLLTKLWNASRFVLHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEE- 641 (800)
T ss_pred CCCCCceecHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-
Confidence 9999999999999988888888998876654221100 0001123457899999999999999999 89999999999
Q ss_pred HHHHHH--HHHHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 275 FQDALK--FINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 275 l~~~~~--~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
+++|+. .+|.|++..+||.-.. ....+...+..+...++.++.+|. |+|- ..+++++++.
T Consensus 642 i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~-iaEelw~~L~ 705 (800)
T PRK13208 642 IESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPF-ITEEVWSWLY 705 (800)
T ss_pred HHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchh-hHHHHHHhCC
Confidence 999996 5999999999873111 111123344455666777777777 4554 4666666664
No 33
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.96 E-value=3.4e-28 Score=269.41 Aligned_cols=215 Identities=17% Similarity=0.152 Sum_probs=165.8
Q ss_pred cCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHh
Q 014658 117 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194 (421)
Q Consensus 117 lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll 194 (421)
+.+|.|+|+.|+||+|+|.-....++.++.+. ||+++++| |||+. +|+|||||+||||+|.+++++||+|++|||++
T Consensus 580 ~~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~H-G~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~ll 658 (961)
T PRK13804 580 LKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVA 658 (961)
T ss_pred cCCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEe-ccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHH
Confidence 45799999999999985555566777777665 78899887 99986 99999999999999999999999999999999
Q ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccChH
Q 014658 195 SAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTS 268 (421)
Q Consensus 195 ~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~ 268 (421)
++++++|++||++.|.++.+.+.+|+|+++++.+.+..+... ......|++++..++++.+.+.++| ++|+++
T Consensus 659 s~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~ 737 (961)
T PRK13804 659 SVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFK 737 (961)
T ss_pred hCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 989999999999999888778888999887766655443221 0113457899999999999999999 999999
Q ss_pred HHHHHHHHHHH-H-HHHHHHhhhcccC--chhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 269 HILTGAFQDAL-K-FINSSLNMLKKKQ--PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 269 ~Al~~~l~~~~-~-~~N~yi~~~~pw~--~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
+|++. +++|+ . .+|.|++..+||. .......+......+...+..++.+|. |+|- ..+++++++.
T Consensus 738 ~a~~~-l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~-~aEeiw~~L~ 807 (961)
T PRK13804 738 RIYKA-LVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPF-TAEEAWLYRY 807 (961)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHhcc
Confidence 99999 99999 3 5799999999863 111111122222233344555566666 4554 5666666665
No 34
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=99.96 E-value=2.1e-28 Score=273.00 Aligned_cols=234 Identities=15% Similarity=0.182 Sum_probs=170.6
Q ss_pred cCC-CCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCccccccc
Q 014658 95 DSP-WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSL 171 (421)
Q Consensus 95 ~sp-wg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSl 171 (421)
+|. |....-||.-+ .....+++ |.|+|++|+||++||....++++..+.+. ||.++++| |||+. +|+|||||+
T Consensus 468 dS~l~y~s~~g~p~~-~~~~~~~~--P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~h-G~v~d~~G~KMSKSk 543 (1052)
T PRK14900 468 SSGLWPFSTMGWPEQ-TDTLRTFY--PTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLH-PMVRDEKGQKMSKTK 543 (1052)
T ss_pred cCChHHHHHHcCCCc-hHHHHhhC--CchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEec-ccEECCCCCCccCCC
Confidence 455 54555566422 22223344 89999999999998877777777666665 77889776 99997 999999999
Q ss_pred CCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-C-----CCCCCCCh
Q 014658 172 GNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-H-----GKTARINP 244 (421)
Q Consensus 172 GN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~-~-----~~~~~~d~ 244 (421)
||+|+|.+++++||+|++||||++. ++++|++||++.+....+.+.+++|..+.+...+..+.. . ......|+
T Consensus 544 GNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~ 623 (1052)
T PRK14900 544 GNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADR 623 (1052)
T ss_pred CCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHH
Confidence 9999999999999999999999985 899999999999987777777888865544322222211 0 11234678
Q ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-c
Q 014658 245 AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-L 321 (421)
Q Consensus 245 ~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i 321 (421)
|+++.++.++.++.++| ++|+|+.|++. +++|+ ..+|.||+..+|+...............+...|..++.+|. |
T Consensus 624 wils~l~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~~~~~L~~~L~~l~~LLaPf 701 (1052)
T PRK14900 624 WILARLQRAVNETVEAL-EAFRFNDAANA-VYAFVWHELCDWYIELAKEALASEDPEARRSVQAVLVHCLQTSYRLLHPF 701 (1052)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHhhhHHHHHhccHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999 99999999999 99998 49999999988863111111112233344455555566665 3
Q ss_pred CCCCChHHHHHHHH
Q 014658 322 LPPGAYSEVLQQLK 335 (421)
Q Consensus 322 ~~~~~~~~~~~~~~ 335 (421)
+|- ..+++++.+.
T Consensus 702 mP~-~aEeiw~~L~ 714 (1052)
T PRK14900 702 MPF-ITEELWHVLR 714 (1052)
T ss_pred hHH-HHHHHHHHhc
Confidence 454 4566666653
No 35
>PLN02882 aminoacyl-tRNA ligase
Probab=99.96 E-value=3e-28 Score=272.85 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=167.2
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|+.|+|++|+|.....+++.++++. ||.++ ++||||+. +|+|||||+||+|+|.+++++||+|++||||+++
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~V-ivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s 644 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNL-ICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINS 644 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCccee-EEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhC
Confidence 589999999999999988888888888885 66666 55599997 8999999999999999999999999999999987
Q ss_pred CC--CCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCC--------cccCC------CCCCCChHHHHHHHHHHHHHHH
Q 014658 197 HY--RSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSP--------FQEHG------KTARINPAAEDCINKLRDEFHA 259 (421)
Q Consensus 197 ~~--~~d~~fs~e~l~~~~-~~l~~l~~~l~~~~~~~~~--------~~~~~------~~~~~d~~l~~~l~~~~~~v~~ 259 (421)
++ .+|++|+++.+.+.. +.+.++||+++++..++.. +.+.. .....|+|+++.++++.+.+.+
T Consensus 645 ~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~ 724 (1159)
T PLN02882 645 PVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVRE 724 (1159)
T ss_pred CcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 65 688999999998765 4677889987766544322 11110 1134689999999999999999
Q ss_pred HHHhccChHHHHHHHHHHHHH-HHHHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 260 RMSDDLNTSHILTGAFQDALK-FINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 260 a~~dd~~~~~Al~~~l~~~~~-~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
+| ++|++++|+.. |++|+. .+|.|++..+||.-.. ..+.+...+.++.++|..++.+|. |+|- .++++++++.
T Consensus 725 ~m-e~y~f~~A~~~-I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf-~aEeI~q~L~ 800 (1159)
T PLN02882 725 EM-GAYRLYTVVPY-LVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPF-FTEVLYQNLR 800 (1159)
T ss_pred HH-HccCHHHHHHH-HHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhH-HHHHHHHHhc
Confidence 99 99999999999 999997 6899999999984211 122234455566666777777776 3454 4666666664
No 36
>PLN02943 aminoacyl-tRNA ligase
Probab=99.95 E-value=1.2e-27 Score=264.98 Aligned_cols=235 Identities=17% Similarity=0.184 Sum_probs=175.6
Q ss_pred cCC-CCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCccccccc
Q 014658 95 DSP-WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSL 171 (421)
Q Consensus 95 ~sp-wg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSl 171 (421)
+|. |....-||.-+.......+ +|.|+|+.|+||+|||..+..+++..+.++ ||.++|+| |+++ .+|+|||||+
T Consensus 512 dS~l~p~s~lgwp~~~~~~~~~~--yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~h-g~v~~~~G~KMSKS~ 588 (958)
T PLN02943 512 SSALWPFSTLGWPDVSAEDFKKF--YPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLH-GLIRDSQGRKMSKTL 588 (958)
T ss_pred cCccchHHhcCCCccChHHHhcc--CCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEe-ccEECCCCCcccCcC
Confidence 444 5555556743222222233 499999999999998777766666666665 88999998 7776 7999999999
Q ss_pred CCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------cccC-
Q 014658 172 GNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP--------------FQEH- 236 (421)
Q Consensus 172 GN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~--------------~~~~- 236 (421)
||+|+|.+++++||+|++|||+++.++++|++|+++.+....+.+.+|+|..+++...+.. +...
T Consensus 589 GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~ 668 (958)
T PLN02943 589 GNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEE 668 (958)
T ss_pred CCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccc
Confidence 9999999999999999999999998889999999999999888888999987766543321 1100
Q ss_pred --CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccCchh-hhhhhHHHHHHHHHH
Q 014658 237 --GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQ-QQLSLIESLRKIENE 311 (421)
Q Consensus 237 --~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~ 311 (421)
......|+|+++.++.++.++.++| ++|+|+.|++. +++|+ ..+|.|++..+||.... ...........+...
T Consensus 669 ~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~vL~~v 746 (958)
T PLN02943 669 SLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGRE-IYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQAVLLYV 746 (958)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHH-HHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHHHHHHH
Confidence 0113457899999999999999999 99999999999 99995 79999999999974111 111122334445566
Q ss_pred HHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 312 VKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 312 l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
+..++.+|. |+|- .++++++++.
T Consensus 747 l~~ll~LL~PfmPf-itEELwq~L~ 770 (958)
T PLN02943 747 FENILKLLHPFMPF-VTEELWQALP 770 (958)
T ss_pred HHHHHHHHhCcchh-HHHHHHHHcC
Confidence 666777777 4554 4666666663
No 37
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=8.3e-28 Score=267.49 Aligned_cols=212 Identities=19% Similarity=0.226 Sum_probs=161.2
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|+.|+|++|+|.....+++.++++ .||+++++| |+|+. +|+|||||+||+|+|.+++++||+|++||||++.
T Consensus 544 ~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~h-G~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~ 622 (975)
T PRK06039 544 FPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVH-GHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSS 622 (975)
T ss_pred CCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEe-eeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhC
Confidence 49999999999999988888888888877 488999777 99985 9999999999999999999999999999999997
Q ss_pred -CCCCCcccCHHH-HHHHHHHHHHHHHHHHHHHHh--cCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccC
Q 014658 197 -HYRSPLNYSVLQ-LDSASDAVFYIYQTLQDCEVA--LSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLN 266 (421)
Q Consensus 197 -~~~~d~~fs~e~-l~~~~~~l~~l~~~l~~~~~~--~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~ 266 (421)
+.++|++||++. +..+.+.+.+++|.++++..+ +..+... ......|+|++..++.+...+.++| ++|+
T Consensus 623 ~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~-e~y~ 701 (975)
T PRK06039 623 SAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEAL-DNYD 701 (975)
T ss_pred CCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccC
Confidence 569999999999 555566778888887765422 2221100 1113457899999999999999999 8999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHhhh--cccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 267 TSHILTGAFQDALKFI-NSSLNML--KKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 267 ~~~Al~~~l~~~~~~~-N~yi~~~--~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
++.|++. |++|+..+ |.|++.. .||.... ...+.....++..++..++.+|. |+|- .++++++.+.
T Consensus 702 ~~~A~~~-l~~f~~~lsn~Yi~~~k~r~w~~~~-~~~~~~a~~~L~~~L~~l~~lLaPf~Pf-~aEei~~~L~ 771 (975)
T PRK06039 702 ITKAARA-IRDFVDDLSNWYIRRSRRRFWKEED-DPDKLAAYATLYTVLETLSRLAAPFTPF-IAEEIYQNLT 771 (975)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhhhccCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHhcc
Confidence 9999999 99999765 7799876 4585321 11123334445566666666666 3443 4555555553
No 38
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=1.3e-27 Score=249.67 Aligned_cols=278 Identities=16% Similarity=0.151 Sum_probs=203.9
Q ss_pred CCCCCCCCCCcccccccc--HHHHHHHHHHHHHcCCee-eeCCcEEEeccCCCCccccccccchhhhCCCCccccccccC
Q 014658 1 MADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRN 77 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~--i~~i~~~i~~L~~~g~aY-~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~ 77 (421)
|++|||. ++.+++.|++ .+.+.++++.|.++|++| +.+|.+||++++|.++
T Consensus 190 l~~LgI~-~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~------------------------- 243 (507)
T PRK01611 190 LDRLGVH-FDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDD------------------------- 243 (507)
T ss_pred HHHcCCe-eeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCC-------------------------
Confidence 4679998 4888888864 678999999999999999 8899999998754210
Q ss_pred CCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHH---HHHHhccCCCC-CcE
Q 014658 78 PADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI---AQSCAACQDSN-VSY 153 (421)
Q Consensus 78 p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~---a~~~a~~~~~~-~~~ 153 (421)
.|++|||. +|.+.|.++ -++||++|... ++. .|.+.|.| |+.+.. +.+.+++..+. .++
T Consensus 244 -~~~vl~ks--dG~~~Y~t~----Dia~~~~k~~~----~d~--~i~V~g~~----q~~hf~~~~~~~~~lg~~~~~~~~ 306 (507)
T PRK01611 244 -KDRVLIKS--DGTYTYFTR----DIAYHLYKFER----FDR--VIYVVGAD----HHGHFKRLKAALKALGYDPDALEV 306 (507)
T ss_pred -CCeEEEEC--CCCccchHH----HHHHHHHHHhh----cCE--EEEEECCC----hHHHHHHHHHHHHHcCCCcccceE
Confidence 28999998 787877766 67888888643 443 34455566 444333 44455554433 366
Q ss_pred EEe--eeeeee-CCcccccccCCccCHHHHHHh-cCc----------------hHHHHHHhhcCCCCCcccCHHHHHHHH
Q 014658 154 WMH--NGHVTN-NNEKMSKSLGNFFTIRQITER-YHP----------------LALRHFLISAHYRSPLNYSVLQLDSAS 213 (421)
Q Consensus 154 ~~h--~g~l~~-~G~KMSKSlGN~i~~~dll~~-yg~----------------D~lR~~ll~~~~~~d~~fs~e~l~~~~ 213 (421)
++| .|++.. +|+|||||+||+|+|.|++++ +|. |++||++|+.+..+|++|+++.+.+..
T Consensus 307 ~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~ 386 (507)
T PRK01611 307 LLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFE 386 (507)
T ss_pred EEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHHhhc
Confidence 777 345543 678999999999999999999 999 999999999999999999999987654
Q ss_pred H--H------HHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Q 014658 214 D--A------VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 285 (421)
Q Consensus 214 ~--~------l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~y 285 (421)
+ . ..|+.+.++................+.+.+++..+..+.+.+.+++ ++++++.++.. +++|++.+|+|
T Consensus 387 ~~~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~p~~l~~y-l~~la~~f~~f 464 (507)
T PRK01611 387 GNNPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELEPHRIANY-LYELAGAFHSF 464 (507)
T ss_pred CCCcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHH-HHHHHHHHHHH
Confidence 2 1 1233333332211000000001113456889999999999999999 99999999999 99999999999
Q ss_pred HhhhcccCch-h-hhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 286 LNMLKKKQPK-Q-QQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 286 i~~~~pw~~~-~-~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
++.+. .... . ....++.++.++..+|...|.+|||.+.
T Consensus 465 Y~~~~-l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~ 504 (507)
T PRK01611 465 YNRVL-LKDEEEELRNARLALVKATAQVLKNGLDLLGISAP 504 (507)
T ss_pred HHHCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 97553 3211 1 2346788899999999999999999753
No 39
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=99.95 E-value=1e-26 Score=257.05 Aligned_cols=212 Identities=19% Similarity=0.200 Sum_probs=157.4
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|++|+||+++|.-.....+.++.+ .||.++++| |||+. +|+|||||+||+|+|.|++++||+|++|||+++.
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~h-G~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~ 641 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITH-GFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASS 641 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEec-ceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC
Confidence 48999999999999555555545555545 588889776 99985 9999999999999999999999999999999999
Q ss_pred CCCCCcccCHHHHHHHHHHHH-HHHHHHHHHH--HhcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccCh
Q 014658 197 HYRSPLNYSVLQLDSASDAVF-YIYQTLQDCE--VALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNT 267 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~-~l~~~l~~~~--~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~ 267 (421)
++.+|++|+++.+....+.+. .++|.++++. ..+..+... ......|++++..++.+.+.+.++| ++|++
T Consensus 642 ~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~~ 720 (861)
T TIGR00392 642 DPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYNF 720 (861)
T ss_pred CCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhccH
Confidence 999999999999988766444 4566666654 444332210 1123457889999999999999999 89999
Q ss_pred HHHHHHHHHHHHHH--HHHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 268 SHILTGAFQDALKF--INSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 268 ~~Al~~~l~~~~~~--~N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
+.|++. +++|+.. +|.|++..+| |........+ .....+...+..++.+|. |+|- .++++++.+.
T Consensus 721 ~~a~~~-l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL~P~~P~-~aeeiw~~L~ 790 (861)
T TIGR00392 721 HKVLRA-LQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPH-TAEEIYQNLP 790 (861)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhcc
Confidence 999999 9999875 8999998876 8522211111 223334455555566666 4554 4566666553
No 40
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=99.94 E-value=6.5e-27 Score=261.30 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=168.3
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHH--------------
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-------------- 182 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~-------------- 182 (421)
+|.|+|++|+||+|+|....++++.++.++ ||.++++| |+|.. +|+|||||+||||+|.++++
T Consensus 537 ~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~H-G~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~~ 615 (995)
T PTZ00419 537 FPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLH-AMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYEG 615 (995)
T ss_pred CCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhcc-ceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhcc
Confidence 489999999999999988888888888875 77889666 99996 99999999999999999999
Q ss_pred -----------------------hcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC--
Q 014658 183 -----------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-- 236 (421)
Q Consensus 183 -----------------------~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~-- 236 (421)
+||+|++|||+++. +.++|++|+.+.+....+.+.++||.++++..++......
T Consensus 616 ~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~~ 695 (995)
T PTZ00419 616 NLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPN 695 (995)
T ss_pred ccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 89999999999985 7899999999999987778889999988776554332110
Q ss_pred ---------CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccCc-hhhhhhhHHH
Q 014658 237 ---------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQP-KQQQLSLIES 304 (421)
Q Consensus 237 ---------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~~-~~~~~~~~~~ 304 (421)
......|+|++..++.+.+.+.++| ++|+|+.|++. +++|+ ..+|.|++..+||.. ......+...
T Consensus 696 ~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~-e~y~f~~A~~~-i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~~ 773 (995)
T PTZ00419 696 STLFKPNNVESLPWEDKWILHRLNVAIKEVTEGF-KEYDFSEATQA-TYNFWLYELCDVYLELIKPRLSKQSDGERKQHA 773 (995)
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHHH
Confidence 0112357899999999999999999 89999999999 99974 689999999999851 1111112233
Q ss_pred HHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 305 LRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 305 l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
..++..++..++.+|. |+|- .++++++.+.
T Consensus 774 ~~~L~~vL~~~l~LL~PfmPf-itEElw~~L~ 804 (995)
T PTZ00419 774 QDVLHTVLDIGLRLLHPMMPF-ITEELYQRLP 804 (995)
T ss_pred HHHHHHHHHHHHHHHhhhhhh-hHHHHHHhhh
Confidence 4455566677777777 4554 4666666663
No 41
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.94 E-value=3.6e-27 Score=238.14 Aligned_cols=218 Identities=22% Similarity=0.215 Sum_probs=144.7
Q ss_pred CCCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccc--cccccch----------hhhCCC
Q 014658 2 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LSGQRLE----------NNRAGE 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t--~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~--ls~~~~~----------~~~~g~ 67 (421)
++|||. +|.+.|.| +|...+.+++++|.++|++|..+..++||+++...+.. +.+.+.. -...|.
T Consensus 79 ~~~~I~-~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~ 157 (391)
T PF09334_consen 79 EALNIS-YDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGR 157 (391)
T ss_dssp HHTT----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSS
T ss_pred HHcCCC-CcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCC
Confidence 578997 69999987 49999999999999999999999999999887543211 2222110 011222
Q ss_pred Cc-----------------cccccccCCCcccc---------cccccC-----------------CC----CcccCCCCC
Q 014658 68 RV-----------------AVDSRKRNPADFAL---------WKAAKA-----------------GE----PSWDSPWGP 100 (421)
Q Consensus 68 ~v-----------------~~~~~K~~p~DF~L---------Wk~~~~-----------------~~----~~w~spwg~ 100 (421)
.+ ++..+ ...=|-| |-.+.+ +- ++-+.+||.
T Consensus 158 ~~~~~~l~~p~~~~~g~~~~~r~e--~~~ff~L~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI 235 (391)
T PF09334_consen 158 PLEPEELINPVCKICGSPPEVREE--ENYFFKLSKFRDQLREWLESNPDFPPPRVREIVRNWLKEGLPDLSISRPLDWGI 235 (391)
T ss_dssp BEECCCSECEEETTTS-B-EEEEE--EEEEE-GGGGHHHHHHHHHHSTTSSHHHHHHHHHHHHHT----EE-ECTTSSSE
T ss_pred CcccccccCCccccccccCccccc--eEEEEehHHhHHHHHHHHhcCCCCCChhHHHHHHHHhhcccCceeeecCCCCcc
Confidence 21 11111 1111222 111111 01 245678998
Q ss_pred CCCC--------CchhhHHHHH----------------hhc---CCCceEEeecccCcCcchHHHHHHHHhccCCCCCcE
Q 014658 101 GRPG--------WHIECSAMSA----------------HYL---SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 153 (421)
Q Consensus 101 grPg--------Whiecsam~~----------------~~l---g~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~ 153 (421)
--|| |.-....+.. +++ +.+-.+|++|||+++||.++|||+++|++.++|.++
T Consensus 236 ~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i 315 (391)
T PF09334_consen 236 PVPGDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRI 315 (391)
T ss_dssp EETTEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB---SEE
T ss_pred eeeccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCCCCCEE
Confidence 7775 6432222222 111 112349999999999999999999999777777777
Q ss_pred EEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHH-----HHHHHHHH
Q 014658 154 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----VFYIYQTL 223 (421)
Q Consensus 154 ~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~-----l~~l~~~l 223 (421)
++| ||++++|+|||||+||+|+|.|+++.||+|++||||++. +..+|.+|+++.+.+..|. ++||.+|+
T Consensus 316 ~~~-~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 316 VVH-GFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp EEE---EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred Eee-eeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 555 999999999999999999999999999999999999995 8899999999999988763 78887764
No 42
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=99.94 E-value=4.2e-26 Score=255.09 Aligned_cols=212 Identities=15% Similarity=0.188 Sum_probs=167.2
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+.+.|.|++|+|....+.++.+++++ ||+++++| |||+. +|+|||||+||||+|.+++++||+|++|||+++.
T Consensus 672 fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvH-G~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~ 750 (1205)
T PTZ00427 672 FPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICN-GLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINS 750 (1205)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEc-cEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhc
Confidence 499999999999999999999999999986 78999776 99996 9999999999999999999999999999999985
Q ss_pred -CC-CCCcccCHHHHHHHH-HHHHHHHHHHHHHHHhcCCccc-------------CCCCCCCChHHHHHHHHHHHHHHHH
Q 014658 197 -HY-RSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSPFQE-------------HGKTARINPAAEDCINKLRDEFHAR 260 (421)
Q Consensus 197 -~~-~~d~~fs~e~l~~~~-~~l~~l~~~l~~~~~~~~~~~~-------------~~~~~~~d~~l~~~l~~~~~~v~~a 260 (421)
.. .+|++|+++.+.+.. +.+.++||..+++...+..+.. .......|+|+++.++++.+.+.++
T Consensus 751 ~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~ 830 (1205)
T PTZ00427 751 VAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTE 830 (1205)
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 54 799999999997654 4578899988776654332110 0112346899999999999999999
Q ss_pred HHhccChHHHHHHHHHHHHH-HHHHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 261 MSDDLNTSHILTGAFQDALK-FINSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 261 ~~dd~~~~~Al~~~l~~~~~-~~N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
| ++|++++|+.. |++|+. .+|.|++..++ |..... +.....+.++..+|..++.+|. |+|- .++++++.+.
T Consensus 831 m-e~Y~f~~A~~~-i~~Fi~~lsnwYIe~~K~rl~~~~~~-~~~~~a~~tL~~vL~~~~~LLaPf~Pf-iaEeiyq~L~ 905 (1205)
T PTZ00427 831 M-KAYKLYNVLPK-LLQFIENLTNWYIRLNRDRMRGSLGE-ENCLQSLCTTYRTLHLFTVLMAPFTPF-ITEYIYQQLR 905 (1205)
T ss_pred H-HccCHHHHHHH-HHHHHHHhccHHHHHcchhhccCCCc-HHHHHHHHHHHHHHHHHHHHccccchH-HHHHHHHHhh
Confidence 9 99999999999 999998 77999997664 421111 1123445556666777777777 3454 4566666663
No 43
>PLN02381 valyl-tRNA synthetase
Probab=99.94 E-value=7.4e-26 Score=252.28 Aligned_cols=212 Identities=16% Similarity=0.151 Sum_probs=167.0
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHH--------------
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-------------- 182 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-------------- 182 (421)
+|.|+.+.|.|++|||....+.++.++++. ||.++++| |+|. .+|+|||||+||||+|.++++
T Consensus 607 ~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~h-G~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~ 685 (1066)
T PLN02381 607 YPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLH-PMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEG 685 (1066)
T ss_pred CCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheec-ceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhcc
Confidence 499999999999999999999999988875 89999777 9998 599999999999999999999
Q ss_pred -----------------------hcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccC-
Q 014658 183 -----------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP-FQEH- 236 (421)
Q Consensus 183 -----------------------~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~-~~~~- 236 (421)
+||+|++|||+++. ..++|++|+.+.+....+.+.+|||.++++...+.. +...
T Consensus 686 ~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~ 765 (1066)
T PLN02381 686 NLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPA 765 (1066)
T ss_pred ccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCccc
Confidence 79999999999985 678899999999998888899999998876544432 1110
Q ss_pred ----CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH--HHHHHHHHhhhcccCchhh---hhhhHHHHHH
Q 014658 237 ----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA--LKFINSSLNMLKKKQPKQQ---QLSLIESLRK 307 (421)
Q Consensus 237 ----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~--~~~~N~yi~~~~pw~~~~~---~~~~~~~l~~ 307 (421)
......|+|+++.++.++..+.++| ++|+|+.|++. +++| ...+|.|++..+||..... ...+.....+
T Consensus 766 ~~~~~~~~~~DrWILskL~~~i~~v~~~~-e~y~F~~A~~~-l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~ 843 (1066)
T PLN02381 766 TLSVETMPFSCKWILSVLNKAISKTVSSL-DAYEFSDAAST-VYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDT 843 (1066)
T ss_pred ccCccccCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHH
Confidence 1123468999999999999999999 89999999999 9999 4688999999999741110 0111222334
Q ss_pred HHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 308 IENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 308 ~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
+..++..++++|. |+|- .++++++.+
T Consensus 844 L~~vL~~llrLL~PfmPf-itEELw~~L 870 (1066)
T PLN02381 844 LWICLDTGLRLLHPFMPF-VTEELWQRL 870 (1066)
T ss_pred HHHHHHHHHHHHHhHhHH-HHHHHHHHh
Confidence 4455666677777 3443 355555555
No 44
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.93 E-value=4.6e-27 Score=231.56 Aligned_cols=194 Identities=19% Similarity=0.155 Sum_probs=138.2
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHH----HHHHcCCeeeeCCcEEEeccCCCCccccc-----cccchhhhCCCCccc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMIT----QIINNDCAYVVEGDVFFAVEKSPNYGRLS-----GQRLENNRAGERVAV 71 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~----~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls-----~~~~~~~~~g~~v~~ 71 (421)
|++|||. ++..++++.|.++++++++ +|.++|++|...+.||||+....-|=.|+ ..-.+-+... .+ .
T Consensus 79 ~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~-~~-~ 155 (314)
T cd00812 79 LKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKL-DG-W 155 (314)
T ss_pred HHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhc-Cc-C
Confidence 4689995 6777777777777777776 99999999999999999977644444442 1111112111 11 1
Q ss_pred cccccCCCcccccccccCCCCcccCCCCCCCC-CCchhhHHHHH----hhc----------------------CCCceEE
Q 014658 72 DSRKRNPADFALWKAAKAGEPSWDSPWGPGRP-GWHIECSAMSA----HYL----------------------SSKFDIH 124 (421)
Q Consensus 72 ~~~K~~p~DF~LWk~~~~~~~~w~spwg~grP-gWhiecsam~~----~~l----------------------g~~~Dih 124 (421)
....+ ..+..|.. .+.+.+||.-.| +|+|+|...+. .|+ -+|.|||
T Consensus 156 p~~~~--~~~~~~l~-----isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~ 228 (314)
T cd00812 156 PEEVR--AMQENWIG-----CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIY 228 (314)
T ss_pred CHHHH--HHHHHHhe-----eeeecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHhCCCeee
Confidence 11111 13445654 556778998888 58888854222 111 1278999
Q ss_pred eecccCcCcchH---HHHHHHHhccC---CCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCC
Q 014658 125 GGGIDLIFPHHE---NEIAQSCAACQ---DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHY 198 (421)
Q Consensus 125 ~gG~Dli~pH~~---~~~a~~~a~~~---~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~ 198 (421)
++|+|+++||+. ++++++.+++. .++.++ ++||||+++|+|||||+||+|+|.|++++||+|++|||+++.+.
T Consensus 229 v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~-~~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~ 307 (314)
T cd00812 229 IGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGL-IVQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP 307 (314)
T ss_pred ecchhHHHHHHHHHHHHHHHHcCcccccccCcHHh-eecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC
Confidence 999999999985 55555555542 456666 46799999999999999999999999999999999999999755
Q ss_pred CCCcccCH
Q 014658 199 RSPLNYSV 206 (421)
Q Consensus 199 ~~d~~fs~ 206 (421)
.|.+|++
T Consensus 308 -~~~~f~~ 314 (314)
T cd00812 308 -PDADFDW 314 (314)
T ss_pred -cCCCCCC
Confidence 8888874
No 45
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.6e-25 Score=240.97 Aligned_cols=210 Identities=20% Similarity=0.229 Sum_probs=169.1
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCC
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHY 198 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~ 198 (421)
.|+.+-|.|..+-|...-...+.|+++. |++++++| ||++ -+|+|||||+||+|+|.+++++||+|+||+|+++++|
T Consensus 556 aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltH-GfvlDe~GrKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd~ 634 (933)
T COG0060 556 ADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTH-GFVLDEKGRKMSKSLGNVVDPQDVIDKYGADILRLWVASSDY 634 (933)
T ss_pred CcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhc-ccEECCCCCCccccCCCcCCHHHHHHhhCchheeeeeeecCc
Confidence 3999999999999999999999999986 78888666 9998 4899999999999999999999999999999999999
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC------CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHH
Q 014658 199 RSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 272 (421)
Q Consensus 199 ~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~------~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~ 272 (421)
..|+.||++.++.....+.+|+|+++++..++..+.+.. ....+|+|++.+++.+...+.++| ++|+|+++++
T Consensus 635 ~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~eay-e~y~f~~v~~ 713 (933)
T COG0060 635 WEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREAY-ENYDFHKVVR 713 (933)
T ss_pred hhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999999989999999999999988888776432 123578999999999999999999 9999999999
Q ss_pred HHHHHHH-HHH-HHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhcc-CCCCChHHHHHHH
Q 014658 273 GAFQDAL-KFI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILGL-LPPGAYSEVLQQL 334 (421)
Q Consensus 273 ~~l~~~~-~~~-N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilGi-~~~~~~~~~~~~~ 334 (421)
. |++|+ ..+ |.|++..+. |.+......+.+.-.++...+..+..++.. +|= +.+++.+.+
T Consensus 714 ~-l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lAPilPf-taEeiw~~l 778 (933)
T COG0060 714 A-LMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLAPILPF-TAEEIWQNL 778 (933)
T ss_pred H-HHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcccchh-hHHHHHHhC
Confidence 9 99999 444 678887664 643222233333333344445556666663 332 345555444
No 46
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.92 E-value=1.4e-25 Score=223.08 Aligned_cols=196 Identities=23% Similarity=0.298 Sum_probs=130.9
Q ss_pred CCCCCCCCC---CccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC--C----CccccccccchhhhCCCCccc
Q 014658 1 MADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--P----NYGRLSGQRLENNRAGERVAV 71 (421)
Q Consensus 1 m~~Lnv~~p---~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~--~----~Yg~ls~~~~~~~~~g~~v~~ 71 (421)
|++|||..+ ...|..++|++.|++++.+|.++|++|...+.|||.+..- + ++.++..+-++-+ .. ++.
T Consensus 97 ~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~~~l~~~~-~~--~~~ 173 (338)
T cd00818 97 FQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIKDRLLEAN-DK--VNW 173 (338)
T ss_pred HHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHHHHHHHHH-hc--CcE
Confidence 467999877 5677777999999999999999999999999999953221 1 2222222111111 11 111
Q ss_pred cc--cccCCCcccccccc-cCCCCcccCCCCCCCCCCchh-hH--------------------HHHH-hh------c--C
Q 014658 72 DS--RKRNPADFALWKAA-KAGEPSWDSPWGPGRPGWHIE-CS--------------------AMSA-HY------L--S 118 (421)
Q Consensus 72 ~~--~K~~p~DF~LWk~~-~~~~~~w~spwg~grPgWhie-cs--------------------am~~-~~------l--g 118 (421)
-+ .|. -+.=|-.. ++--.+.+..||.-.|.|.++ |+ .++. .+ + -
T Consensus 174 ~P~~~~~---~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~~~~~~~~~~~~~ 250 (338)
T cd00818 174 IPEWVKN---RFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFEEL 250 (338)
T ss_pred ECHHHHH---HHHHHHhcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHcCCCCcchhhhcc
Confidence 01 111 11112221 011123345677777766553 30 1111 11 1 1
Q ss_pred CCceEEeecccCcC--cchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhh
Q 014658 119 SKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 119 ~~~Dih~gG~Dli~--pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
+|.|+|+.|+||++ ||...++++. +.+..||.++++| |+++ .+|+|||||+||+|+|.|++++||+|++||||++
T Consensus 251 ~p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~h-g~~~~~~g~KmSKS~gn~i~~~~~~~~~~~D~~R~~l~~ 328 (338)
T cd00818 251 FPADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVH-GFVLDEDGRKMSKSLGNYVDPQEVVDKYGADALRLWVAS 328 (338)
T ss_pred CCCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEE-eeEECCCCCCCCCCCCCcCCHHHHHHHcCcHHHHHHHHh
Confidence 47899999999998 7788877764 3334578999887 8876 5899999999999999999999999999999998
Q ss_pred c-CCCCCccc
Q 014658 196 A-HYRSPLNY 204 (421)
Q Consensus 196 ~-~~~~d~~f 204 (421)
. ++.+|++|
T Consensus 329 ~~~~~~d~~~ 338 (338)
T cd00818 329 SDVYAEDLRF 338 (338)
T ss_pred CCCccCCCCC
Confidence 6 68999876
No 47
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.91 E-value=1.5e-24 Score=218.95 Aligned_cols=199 Identities=19% Similarity=0.212 Sum_probs=136.8
Q ss_pred CCCCCCCCC-Ccccc--ccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCcccc-----
Q 014658 1 MADLQCLPP-TYQPR--VSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVD----- 72 (421)
Q Consensus 1 m~~Lnv~~p-~~~~r--~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~----- 72 (421)
|++|||.-. +.+.+ ..+|+..+..++.+|.++|++|.....||||+.+-..+.. ..+- ...|.+++..
T Consensus 96 ~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~---~evc-~~cg~~~~~~~~~qw 171 (382)
T cd00817 96 LKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISD---IEVC-SRSGDVIEPLLKPQW 171 (382)
T ss_pred HHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCc---chhc-ccCCCeEEEEecCee
Confidence 356787631 13333 3449999999999999999999999999999987655332 2221 1233333211
Q ss_pred -------------ccccCCCcc---------cccccc-cCCCCcccCCCCCCCCCCchh---------------------
Q 014658 73 -------------SRKRNPADF---------ALWKAA-KAGEPSWDSPWGPGRPGWHIE--------------------- 108 (421)
Q Consensus 73 -------------~~K~~p~DF---------~LWk~~-~~~~~~w~spwg~grPgWhie--------------------- 108 (421)
..+.+|-.| .-|-.. .+=-++.+..||...|-|.-+
T Consensus 172 f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (382)
T cd00817 172 FVKVKDLAKKALEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKAAPE 251 (382)
T ss_pred EEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHhccc
Confidence 112222110 001111 011123456788877776531
Q ss_pred -----------------------hHHHHH--hh------c--CCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEE
Q 014658 109 -----------------------CSAMSA--HY------L--SSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYW 154 (421)
Q Consensus 109 -----------------------csam~~--~~------l--g~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~ 154 (421)
+.+... .+ + -+|.|+|++|+||++|||.++++++.++.+. |+.+++
T Consensus 252 ~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~ 331 (382)
T cd00817 252 ACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVY 331 (382)
T ss_pred cccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeE
Confidence 111111 11 1 1378999999999999999999999998775 668898
Q ss_pred Eeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCccc
Q 014658 155 MHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 204 (421)
Q Consensus 155 ~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~f 204 (421)
+| |+|+ .+|+|||||+||+|+|.|++++||+|++|||+++. ++.+|.+|
T Consensus 332 ~h-g~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 332 LH-GLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred ee-eeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 87 9988 79999999999999999999999999999999986 78999876
No 48
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.91 E-value=1.1e-23 Score=230.35 Aligned_cols=183 Identities=15% Similarity=0.137 Sum_probs=140.7
Q ss_pred Ccc-cCCCCCCCCCCchh-----hHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhc------cC-CCCCcEEEeee
Q 014658 92 PSW-DSPWGPGRPGWHIE-----CSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA------CQ-DSNVSYWMHNG 158 (421)
Q Consensus 92 ~~w-~spwg~grPgWhie-----csam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~------~~-~~~~~~~~h~g 158 (421)
+.| +|+|..-|-+|.-. -.....++ +|+|+.++|.|++..|..|......++ .+ .||+++ +|||
T Consensus 491 DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~--~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v-~~~G 567 (805)
T PRK00390 491 DTFVGSSWYYLRYTDPHNDEAPFDKEAANYW--LPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKL-LTQG 567 (805)
T ss_pred ccccccccHHHHhcCcccccCcCChHHhhCc--CCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhh-eecC
Confidence 445 68776544444210 01122233 399999999998866655544333222 23 588887 7789
Q ss_pred eeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Q 014658 159 HVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG 237 (421)
Q Consensus 159 ~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~ 237 (421)
|| |||||+||+|+|.+++++||+|++|||+++ ++|++|++|+++.+.++.+.+.++++.+........... .
T Consensus 568 ~v-----KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~--~ 640 (805)
T PRK00390 568 MV-----KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALD--V 640 (805)
T ss_pred cE-----EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccC--c
Confidence 99 999999999999999999999999999998 599999999999999999999999998876332221111 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Q 014658 238 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 286 (421)
Q Consensus 238 ~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi 286 (421)
.....|++++.+++.++.+++++| ++|+++.|++. |++|++.+++|+
T Consensus 641 ~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~-l~~f~n~lsk~~ 687 (805)
T PRK00390 641 AALSEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAA-LMELVNALYKAE 687 (805)
T ss_pred ccChhhHHHHHHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHH
Confidence 123467999999999999999999 89999999999 999999999987
No 49
>PLN02959 aminoacyl-tRNA ligase
Probab=99.91 E-value=4e-23 Score=231.07 Aligned_cols=202 Identities=22% Similarity=0.173 Sum_probs=144.5
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 196 (421)
+|+|++++|+||+|+|..+.+.++.|++++ ||++-+++||||+.+|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~ 749 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAG 749 (1084)
T ss_pred CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcC
Confidence 599999999999999999999999999875 887755677999999999999999999999999999999999999986
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP---FQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 273 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~---~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~ 273 (421)
++.+|.+|+++.+..+...+.++ +..+...+.. ..........|+|+++.++.++.++.++| ++|+++.|++.
T Consensus 750 ~~~~D~nF~~k~~n~~~~~l~n~---~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~ 825 (1084)
T PLN02959 750 DGVDDANFVFETANAAILRLTKE---IAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKS 825 (1084)
T ss_pred CccCCCCccHHHHHHHHHHHHHH---HHHHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH
Confidence 78899999999887655444333 2222222111 11111123568999999999999999999 99999999998
Q ss_pred HHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 274 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 274 ~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
.++++......|..... .. ......+..++..++++|. |+|= ..+++++.+
T Consensus 826 ~~Yel~~~k~~yr~~~~----~~-----~~~~~~L~~vl~~~l~LLaP~~Pf-iaEEiW~~l 877 (1084)
T PLN02959 826 GFYDLQAARDEYRLSCG----SG-----GMNRDLVWRFMDVQTRLITPICPH-YAEHVWREI 877 (1084)
T ss_pred HHHHHHHhHHHHhhccc----cc-----hHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhc
Confidence 33334444343332111 00 0112234455666677776 3332 344555544
No 50
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.89 E-value=5.2e-23 Score=225.59 Aligned_cols=188 Identities=15% Similarity=0.100 Sum_probs=143.5
Q ss_pred cccCCCCCCCCCCchh-----hHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHh------ccC-CCCCcEEEeeeee
Q 014658 93 SWDSPWGPGRPGWHIE-----CSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA------ACQ-DSNVSYWMHNGHV 160 (421)
Q Consensus 93 ~w~spwg~grPgWhie-----csam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a------~~~-~~~~~~~~h~g~l 160 (421)
+.+|+|..-|-.|.-. ......+++ |+|+.+||+|++..|..|......+ +.+ .||+++++| |||
T Consensus 490 w~dSswy~~r~~~p~~~~~~~~~~~~~~~~--PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~-G~V 566 (842)
T TIGR00396 490 FAGSSWYYLRYLDPKNTDQPFDKEKAEYWL--PVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQ-GMV 566 (842)
T ss_pred cccCCHHHHHhhCCCCcCCCcChHHHhccC--CCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhcc-ceE
Confidence 3468887655443211 112223333 9999999999987776664443322 223 588999665 999
Q ss_pred ee-----CCc---------------------------ccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHH
Q 014658 161 TN-----NNE---------------------------KMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVL 207 (421)
Q Consensus 161 ~~-----~G~---------------------------KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e 207 (421)
+. +|+ |||||+||+|+|.+++++||+|++|||+++ +++++|++|+++
T Consensus 567 l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~ 646 (842)
T TIGR00396 567 LGFYYPPNGKSPPDELTERDEKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDS 646 (842)
T ss_pred EeeeecCCCCccChhhhccccccccccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHH
Confidence 86 788 999999999999999999999999999997 599999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc--cCCCCCCCChHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHH
Q 014658 208 QLDSASDAVFYIYQTLQDCEVALSPFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLN-TSHILTGAFQDALKFINS 284 (421)
Q Consensus 208 ~l~~~~~~l~~l~~~l~~~~~~~~~~~--~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~-~~~Al~~~l~~~~~~~N~ 284 (421)
.+..+.+.+.+++|.+..+...+.... ........|+|++.+++.++.+++++| ++|+ ++.|++. +++|++.+.+
T Consensus 647 ~l~~~~~~l~kl~~~~~~~~~~~~~~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~-e~y~~fn~ai~~-l~~f~n~L~~ 724 (842)
T TIGR00396 647 GLEGARRFLDRVWNLFYNILGELDGKTYLTPTILEEAQKELRRDVHKFLKKVTEDL-EKLESFNTAISA-MMILLNALYK 724 (842)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHH-HHHHHHHHHh
Confidence 999999999999999877654433211 111123467899999999999999999 7888 9999999 9999987665
Q ss_pred H
Q 014658 285 S 285 (421)
Q Consensus 285 y 285 (421)
+
T Consensus 725 ~ 725 (842)
T TIGR00396 725 A 725 (842)
T ss_pred h
Confidence 4
No 51
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.88 E-value=3.2e-21 Score=203.90 Aligned_cols=277 Identities=12% Similarity=0.068 Sum_probs=197.2
Q ss_pred CCCCCCCCCccc--cccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 2 ADLQCLPPTYQP--RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 2 ~~Lnv~~p~~~~--r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
++|||.- |.+. .-+-+-..+.+.++.|.++|++|+. |.++++++ .||. + +.
T Consensus 246 ~~l~V~f-D~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~---~~~d-------------------~---~~ 298 (566)
T TIGR00456 246 ARLNIHF-DSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLT---LFGD-------------------K---DK 298 (566)
T ss_pred HHcCCce-eeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEcc---cccC-------------------C---CC
Confidence 4677763 5555 3333555677888999999999987 99998764 3331 0 12
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhc-CCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEE
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYL-SSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWM 155 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~l-g~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~ 155 (421)
|.+|=|. +|.+.+.++ ..++...++- |..--|.+.|.| ||.+...+. ++++.+++.++ .
T Consensus 299 ~~vl~ks--DGt~~Y~t~----------DiA~~~~k~~~~~d~iI~V~g~~----q~~h~~~v~~~l~~lG~~~~~~l-~ 361 (566)
T TIGR00456 299 DRVLQKS--DGTYLYLTR----------DIAYHLDKLERGFDKMIYVWGSD----HHLHIAQFFAILEKLGFYKKKEL-I 361 (566)
T ss_pred CeEEEEC--CCCceechh----------hHHHHHHHHhcCCCEEEEEecCc----HHHHHHHHHHHHHHcCCCCCCce-E
Confidence 6777775 565555443 2333333332 445678999999 777765544 44544444555 8
Q ss_pred eeeeeeeCCcccccccCCccCHH-----------------------HHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHH
Q 014658 156 HNGHVTNNNEKMSKSLGNFFTIR-----------------------QITERYHPLALRHFLISAHYRSPLNYSVLQLDSA 212 (421)
Q Consensus 156 h~g~l~~~G~KMSKSlGN~i~~~-----------------------dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~ 212 (421)
|++|++++|.|||||+||+|+|. ++++.+|.|++|||+|+....+|++|+++.+.+.
T Consensus 362 h~~~~~V~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~ 441 (566)
T TIGR00456 362 HLNFGMVPLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSF 441 (566)
T ss_pred EEEEEEEECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhcc
Confidence 88999999999999999999998 7777899999999999988899999999987664
Q ss_pred H----HHHHHHHHHHHHHHHhcCC--ccc-C---CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 014658 213 S----DAVFYIYQTLQDCEVALSP--FQE-H---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI 282 (421)
Q Consensus 213 ~----~~l~~l~~~l~~~~~~~~~--~~~-~---~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~ 282 (421)
. ..+++.+.|+..+...... ... . ....+.+..++..+..+.+.+.+++ ++++++.++.. ++++++.+
T Consensus 442 ~~n~~~yiqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~-l~~La~~~ 519 (566)
T TIGR00456 442 EGNTAPYIQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNY-LYELASLF 519 (566)
T ss_pred CCCCchhHHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHH-HHHHHHHH
Confidence 3 2355555554433221110 000 0 0112234567788899999999999 99999999999 99999999
Q ss_pred HHHHhhhcccCch--hhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 283 NSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 283 N~yi~~~~pw~~~--~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
|+|++.+....+. .....++.++.++..+|...|.+|||.+.
T Consensus 520 N~yy~~~~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~ 563 (566)
T TIGR00456 520 SSFYKACPVLDAENENLAAARLALLKATRQTLKNGLQLLGIEPP 563 (566)
T ss_pred HHHHhcCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999988554422 12356888999999999999999999753
No 52
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5e-22 Score=212.37 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=136.4
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccC-------CCCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHH
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-------DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALR 190 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-------~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR 190 (421)
+|+|+++||+||+..|..|.+..+.|++. +||+++ +.+|||+. +|+|||||+||+|+|.+++++||+|++|
T Consensus 525 ~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L-~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~R 603 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKL-ITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVR 603 (814)
T ss_pred cChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhh-hccceEEecCCCccccccCCCCCHHHHHHHhCchHHH
Confidence 39999999999999999999999999873 477778 67899998 8999999999999999999999999999
Q ss_pred HHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCC-hHHHHHHHHHHHHHHHHHHhc-cCh
Q 014658 191 HFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARIN-PAAEDCINKLRDEFHARMSDD-LNT 267 (421)
Q Consensus 191 ~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~l~~~l~~~~~~v~~a~~dd-~~~ 267 (421)
+|++.. ++.+|++|+++.+..+.+.|.++|+.+....+..... ..... ..+...++++...+.+.+ +. +.+
T Consensus 604 l~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~~~v~~~~-e~~~~~ 677 (814)
T COG0495 604 LYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-----LTKEQGKEDRWLLHRTIKKVTEDF-EARQTF 677 (814)
T ss_pred HHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-----ccchhhHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 999995 8999999999999999999999998876543221000 00011 334455777788888888 55 888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 014658 268 SHILTGAFQDALKFINSSLNMLK 290 (421)
Q Consensus 268 ~~Al~~~l~~~~~~~N~yi~~~~ 290 (421)
+.|++. +|+|++.+.+|.....
T Consensus 678 nt~i~~-~m~l~N~l~~~~~~~~ 699 (814)
T COG0495 678 NTAIAA-LMELLNALRKYLRRTE 699 (814)
T ss_pred HHHHHH-HHHHHHHHHHHHhccc
Confidence 999999 9999999999887644
No 53
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1e-21 Score=205.22 Aligned_cols=223 Identities=18% Similarity=0.241 Sum_probs=177.2
Q ss_pred cccCC--CCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccc
Q 014658 93 SWDSP--WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMS 168 (421)
Q Consensus 93 ~w~sp--wg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMS 168 (421)
.|.|+ |...--||.-+..++..-| |.++-=.|.||+|||---...+.+-++|+ ||.++++| |+|. -.|+|||
T Consensus 520 TWFSS~L~PfS~lGWP~~t~d~~~fy---P~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH-~mVRDa~GRKMS 595 (995)
T KOG0432|consen 520 TWFSSGLWPFSTLGWPEETKDFKNFY---PLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLH-GLVRDAHGRKMS 595 (995)
T ss_pred hhhhcccccchhcCCccccccHHhcC---CchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeec-hhhccccccccc
Confidence 67765 7788889998766665433 78888899999999988888887778886 99999887 9998 5899999
Q ss_pred cccCCccCHHHHHH------------------------------hc-------CchHHHHHHhhc-CCCCCcccCHHHHH
Q 014658 169 KSLGNFFTIRQITE------------------------------RY-------HPLALRHFLISA-HYRSPLNYSVLQLD 210 (421)
Q Consensus 169 KSlGN~i~~~dll~------------------------------~y-------g~D~lR~~ll~~-~~~~d~~fs~e~l~ 210 (421)
||+||||+|.|+|+ .| |.|++||.|++. .-..|++++...+.
T Consensus 596 KSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~ 675 (995)
T KOG0432|consen 596 KSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVE 675 (995)
T ss_pred hhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHh
Confidence 99999999999998 34 999999999985 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-cccC----CC-CCC-CChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HH
Q 014658 211 SASDAVFYIYQTLQDCEVALSP-FQEH----GK-TAR-INPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KF 281 (421)
Q Consensus 211 ~~~~~l~~l~~~l~~~~~~~~~-~~~~----~~-~~~-~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~--~~ 281 (421)
....++++|||..+++..++.. +.+. .. ... .|.|++..+...++.+.+.| +.++|+.|... +..|. ..
T Consensus 676 g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~-~~~~f~~at~a-~~~Fwl~~l 753 (995)
T KOG0432|consen 676 GYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESL-EARNFHLATSA-LYAFWLYDL 753 (995)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHH-HHHHHHHHH
Confidence 9888999999999887766543 2111 11 112 78999999999999999999 99999999999 99987 57
Q ss_pred HHHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCC
Q 014658 282 INSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLP 323 (421)
Q Consensus 282 ~N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~ 323 (421)
|..|+...+| |... ..........+..++...|++|. ++|
T Consensus 754 CDVYlE~~Kp~l~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMP 796 (995)
T KOG0432|consen 754 CDVYLEATKPLLWGDS--EALAYEARRVLYRCLDNGLRLLHPFMP 796 (995)
T ss_pred HHHHHHHhhHHhcCCc--HHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 8899999999 4311 11122233445566667778777 344
No 54
>PLN02563 aminoacyl-tRNA ligase
Probab=99.85 E-value=3.2e-21 Score=212.40 Aligned_cols=162 Identities=12% Similarity=0.138 Sum_probs=125.5
Q ss_pred CCceEEeecccCcCcchHHHHHH-------HHhccCCCCCcEEEeeeeee----------eCCc----------------
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQ-------SCAACQDSNVSYWMHNGHVT----------NNNE---------------- 165 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~-------~~a~~~~~~~~~~~h~g~l~----------~~G~---------------- 165 (421)
.|+|+.+||.|+.--|..|-... ....+..||++++.| |||+ .+|+
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~q-GmVl~~~~~~~~~d~~G~~~~~~~~~~~~~~~~~ 693 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQ-GMILGEVEYTAFKDSDGEYVSADTADRLGELQQE 693 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhcc-ceeecCccccceecCCCcCccccccccccccccc
Confidence 49999999999964444433333 332224699999555 9997 3455
Q ss_pred -----------------------------ccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHH
Q 014658 166 -----------------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA 215 (421)
Q Consensus 166 -----------------------------KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~ 215 (421)
|||||+||+|+|.+++++||+|++|||+|+. +..+++.|+.+.+..+.+.
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rf 773 (963)
T PLN02563 694 KIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRF 773 (963)
T ss_pred ccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHH
Confidence 9999999999999999999999999999985 7889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccCC--CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 014658 216 VFYIYQTLQDCEVALSPFQEHG--KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 283 (421)
Q Consensus 216 l~~l~~~l~~~~~~~~~~~~~~--~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N 283 (421)
+.++||.+.........+.... .....+.+++..++.++.+++++| ++|+|+.|++. +|+|++.++
T Consensus 774 L~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~-e~y~FntAi~~-lmef~n~l~ 841 (963)
T PLN02563 774 LGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEI-ESTRFNTAISA-MMEFTNAAY 841 (963)
T ss_pred HHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHh
Confidence 9999988654311000111111 112357889999999999999999 89999999999 999998765
No 55
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=99.83 E-value=2.3e-19 Score=159.22 Aligned_cols=155 Identities=28% Similarity=0.372 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Q 014658 207 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 286 (421)
Q Consensus 207 e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi 286 (421)
+.|.++.+.+.++++++..+. ... .. ...+..+...|.++|+||||||.|+.. |+++++.+|.++
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~-~~~--------~~-----~~~~~~~~~~f~~Al~DDlNt~~Ala~-l~~l~k~~n~~~ 66 (156)
T cd07963 2 DNLEDARAALERLYTALRGVP-PTT--------VD-----IDWGEPFAERFIAAMDDDFNTPEALAV-LFELAREINRLK 66 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-hcc--------cc-----hhhHHHHHHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHh
Confidence 568888889988888877652 110 00 112345668899999999999999999 999999999988
Q ss_pred hhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChH
Q 014658 287 NMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFS 366 (421)
Q Consensus 287 ~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~ 366 (421)
+.. + . .+..+...+..++.+|||... ....... . .........+.|+.|+++|++||++|||+
T Consensus 67 ~~~-~---~--------~~~~~~~~l~~~~~vLGl~~~-~~~~~~~---~-~~~~~~~~~~~v~~Ll~~R~~aR~~Kdf~ 129 (156)
T cd07963 67 KED-I---E--------KAAALAALLKALGGVLGLLQQ-DPEAFLQ---G-GTGEGGLSVAEIEALIAQRNQARKAKDWA 129 (156)
T ss_pred ccc-h---H--------HHHHHHHHHHHHHhccCCCCC-CHHHHHh---c-cccccccCHHHHHHHHHHHHHHHHhcCHH
Confidence 542 1 0 123345667778889998432 1111110 0 00001122346999999999999999999
Q ss_pred HHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 367 KSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 367 ~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
.||+||++|.++||.|+|+|+||+|++
T Consensus 130 ~AD~IRd~L~~~Gi~i~Dt~~Gt~w~~ 156 (156)
T cd07963 130 EADRIRDELAAQGIILEDSPEGTTWRR 156 (156)
T ss_pred HHHHHHHHHHHCCcEEEECCCCceeeC
Confidence 999999999999999999999999974
No 56
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.6e-19 Score=184.04 Aligned_cols=168 Identities=18% Similarity=0.219 Sum_probs=148.1
Q ss_pred CceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHh------cCchHHHH
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER------YHPLALRH 191 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~------yg~D~lR~ 191 (421)
..|+...|.|..+.|...-.-++.|..++ |+..+++| ||.. .+|.|||||+||||+|..++++ ||+|++||
T Consensus 566 ~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivH-GFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~ 644 (937)
T KOG0433|consen 566 VADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVH-GFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRF 644 (937)
T ss_pred ceeeEEecchhcchHHHHHHHHHHHHhccCCchheeee-eeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceee
Confidence 58999999999999999999999998875 88889777 8887 5899999999999999999998 99999999
Q ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC------CCCCCChHHHHHHHHHHHHHHHHHHhcc
Q 014658 192 FLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDL 265 (421)
Q Consensus 192 ~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~------~~~~~d~~l~~~l~~~~~~v~~a~~dd~ 265 (421)
|...+.+..++...+..|.++...+.++.++++++.+.+.++.... ...-+|+.++.++.++..++.+.+ ++|
T Consensus 645 WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y-~~Y 723 (937)
T KOG0433|consen 645 WVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY-NDY 723 (937)
T ss_pred eeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHH-Hhc
Confidence 9998899999999999999999999999999999998887765421 123468899999999999999999 999
Q ss_pred ChHHHHHHHHHHHHH--HHHHHHhhhc
Q 014658 266 NTSHILTGAFQDALK--FINSSLNMLK 290 (421)
Q Consensus 266 ~~~~Al~~~l~~~~~--~~N~yi~~~~ 290 (421)
+|.+++.. |..|+. ..|.|++-.+
T Consensus 724 ~f~kVv~~-lq~F~~~~lSa~YfdivK 749 (937)
T KOG0433|consen 724 KFRKVVND-LQQFLQRNLSAFYFDIVK 749 (937)
T ss_pred cHHHHHHH-HHHHHHHHhhHHHHHHHh
Confidence 99999999 999885 3466777654
No 57
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.81 E-value=1e-18 Score=184.38 Aligned_cols=276 Identities=14% Similarity=0.078 Sum_probs=197.2
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCcc
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 81 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF 81 (421)
++|||.- |.+--=|.|-+.+-+.++.|.++|++|+.+|.++++++. +| . .|.
T Consensus 245 ~~l~V~f-D~~~~es~~~~~~~~v~~~L~~~g~~~e~dGa~~~~~~~---~g--------------------~----~~~ 296 (562)
T PRK12451 245 ELLGVEF-TNFQGEAFYNDLMEDFIGILEEHDLLEESEGALVVNLEE---EG--------------------M----PPC 296 (562)
T ss_pred HHcCCCc-eeecchHhhhhhHHHHHHHHHHCCCEEecCCeEEEEecc---cC--------------------C----Cce
Confidence 5688864 555555567777889999999999999999999987532 22 0 156
Q ss_pred cccccccCCCCcccCCCCCCCCCCchhhHHHHHhh--cCCCceEEeecccCcCcchHHHHHHHHh---ccCCCCCcE-EE
Q 014658 82 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY--LSSKFDIHGGGIDLIFPHHENEIAQSCA---ACQDSNVSY-WM 155 (421)
Q Consensus 82 ~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~--lg~~~Dih~gG~Dli~pH~~~~~a~~~a---~~~~~~~~~-~~ 155 (421)
+|=|. +|.+.+.++ ..+...+++ +|..--|.+.|.| ||.+..-+..+ ++..+..++ .+
T Consensus 297 vl~ks--DGt~~Y~t~----------DiA~~~~k~~~~~~d~~IyV~g~d----q~~h~~~l~~~~~~lg~~~~~~l~h~ 360 (562)
T PRK12451 297 LIRKS--DGATIYATR----------DLTAALYRQNTFGFDKALYVVGPE----QSLHFNQFFTVLKKLGYTWVDGMEHV 360 (562)
T ss_pred EEEeC--CCccccchh----------HHHHHHHHhhccCCCEEEEEeCCc----HHHHHHHHHHHHHHcCCCcccCeEEE
Confidence 66665 555544443 333333444 4555679999999 77777655544 332222222 13
Q ss_pred eeeeeeeCCcccccccCCccCHHHHHHh-------------------------cCchHHHHHHhhcCCCCCcccCHHHHH
Q 014658 156 HNGHVTNNNEKMSKSLGNFFTIRQITER-------------------------YHPLALRHFLISAHYRSPLNYSVLQLD 210 (421)
Q Consensus 156 h~g~l~~~G~KMSKSlGN~i~~~dll~~-------------------------yg~D~lR~~ll~~~~~~d~~fs~e~l~ 210 (421)
..|+|+.+|.||||+.||+|++.||++. .|.+++||++|+.+..++++|+++.+.
T Consensus 361 ~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l 440 (562)
T PRK12451 361 PFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENML 440 (562)
T ss_pred eeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHh
Confidence 3467878999999999999999999996 679999999999999999999999965
Q ss_pred HHH-H-------HHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Q 014658 211 SAS-D-------AVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI 282 (421)
Q Consensus 211 ~~~-~-------~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~ 282 (421)
... + ...|+.+.++.....+.. .......+.+..++..+..+.+.+.+++ ++++++.++.. ++++++.+
T Consensus 441 ~~~g~t~pYiQYa~AR~~SIlrka~~~~~~-~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~y-l~~LA~~f 517 (562)
T PRK12451 441 KFEGETGPYVQYTHARACSILRKESVEFET-CTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKY-VLDVAQSF 517 (562)
T ss_pred CcCCCccHHHHHHHHHHHHHHHhcCCCccc-cccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHH
Confidence 443 2 124555555443100000 0001112334677888999999999999 99999999999 99999999
Q ss_pred HHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 283 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 283 N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
|+|++.++..........++.++.++..+|...|.+|||.+.
T Consensus 518 N~fy~~~~Vl~~~~~~~~RL~L~~a~~~vL~~gL~LLGI~~~ 559 (562)
T PRK12451 518 NKYYGNVRILEESAEKDSRLALVYAVTVVLKEGLRLLGVEAP 559 (562)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999988776532223456888999999999999999999753
No 58
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1e-19 Score=176.57 Aligned_cols=265 Identities=14% Similarity=0.087 Sum_probs=192.5
Q ss_pred CCCCCccccccccH----HHHHHHHHHHHHcCCeeeeCCc----EEEeccCCCCccccccccc-hhhhCCCCcccccccc
Q 014658 6 CLPPTYQPRVSDHM----EQIKDMITQIINNDCAYVVEGD----VFFAVEKSPNYGRLSGQRL-ENNRAGERVAVDSRKR 76 (421)
Q Consensus 6 v~~p~~~~r~t~~i----~~i~~~i~~L~~~g~aY~~~~~----vyf~v~~~~~Yg~ls~~~~-~~~~~g~~v~~~~~K~ 76 (421)
|-..+..+|.|+|+ +....-++..+.+-.+ .|+ --+=+.++-.-| |.++++ .|+++|.+|+++..|.
T Consensus 187 ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~---~~~WS~Na~~it~sWlk~g-l~pRCiTRDLkWGtpVPle~fk~ 262 (567)
T KOG1247|consen 187 ICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLV---EGDWSQNAQNITRSWLKDG-LKPRCITRDLKWGTPVPLEKFKD 262 (567)
T ss_pred eeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccc---cCCCccchHHHHHHHHHcc-ccccccccccccCCCcChhhhcc
Confidence 34456777888886 6666666666665321 122 111123333444 777887 4899999999998776
Q ss_pred CCCcccccccccCCCCcc----cCCCCCCCCCCchhhHHHHHhhcCCCc---eEEeecccCcCcchHHHHHHHHhccCC-
Q 014658 77 NPADFALWKAAKAGEPSW----DSPWGPGRPGWHIECSAMSAHYLSSKF---DIHGGGIDLIFPHHENEIAQSCAACQD- 148 (421)
Q Consensus 77 ~p~DF~LWk~~~~~~~~w----~spwg~grPgWhiecsam~~~~lg~~~---Dih~gG~Dli~pH~~~~~a~~~a~~~~- 148 (421)
- -|..|..+..|..+- -..|+ +++..|- -+++.|||.+.||....|+...+...+
T Consensus 263 K--VfYVWFDA~IGYlsit~~yt~ew~---------------kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~ 325 (567)
T KOG1247|consen 263 K--VFYVWFDAPIGYLSITKNYTDEWE---------------KWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENY 325 (567)
T ss_pred c--EEEEEEcCcceEEEeehhhhHHHH---------------HHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCc
Confidence 4 499999988876421 12221 1222222 347899999999999999988777553
Q ss_pred CCCcEEEeeeeeeeCCcccccccCCccCHHHHHH-hcCchHHHHHHhhc-CCCCCcccCHHHHHHHHH-----HHHHHHH
Q 014658 149 SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQ 221 (421)
Q Consensus 149 ~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~-----~l~~l~~ 221 (421)
+..+.+....+|+.+..|+|||+|-.|.-.++.+ ..+++..|||||+. +-.+|..|||+.+....| +++|+.|
T Consensus 326 t~v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvN 405 (567)
T KOG1247|consen 326 TVVHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVN 405 (567)
T ss_pred hhheeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHH
Confidence 5566667778889999999999999999888876 48999999999996 889999999999988754 4677777
Q ss_pred HHHH-HHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 222 TLQD-CEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 222 ~l~~-~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
|+.. +....++..+.-....-+..+++.++.+..++.++| +.-.+..|++. +|++.+..|.|++.++-|+
T Consensus 406 R~l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~-~m~is~~GNqylQ~~~~~k 476 (567)
T KOG1247|consen 406 RVLKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKT-AMEISRRGNQYLQENTDNK 476 (567)
T ss_pred HHHHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhhHHHhcccccc
Confidence 7443 333233322211223347789999999999999999 99999999999 9999999999999987665
No 59
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4.7e-17 Score=170.34 Aligned_cols=280 Identities=13% Similarity=0.075 Sum_probs=201.3
Q ss_pred CCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 2 ADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
++|||. -|.+---++ +-..|-+.|+.|.++|++|+.+|..+.|..+|..||. +.
T Consensus 250 ~~l~V~-fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd-----------------------~~ 305 (577)
T COG0018 250 DRLGVK-FDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALVVDLLKFKKFGD-----------------------DK 305 (577)
T ss_pred HHhCcc-cceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEEEehhhhhhcCC-----------------------CC
Confidence 457775 455543333 3345778999999999999999999999888775553 12
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhh-cCCCceEEeecccCcCcchHHHHHHHHh---ccCCCCCcEEE
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY-LSSKFDIHGGGIDLIFPHHENEIAQSCA---ACQDSNVSYWM 155 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~-lg~~~Dih~gG~Dli~pH~~~~~a~~~a---~~~~~~~~~~~ 155 (421)
|.+|=|. +|-..+-++ .-+...+++ .|...-|.+.|.| ||.+..-+..+ ++..+...+.+
T Consensus 306 ~~vl~KS--DGt~lY~t~----------DIAy~~~K~~~~~d~~IyV~gad----q~~~~~ql~~~l~~~g~~~~~~~~~ 369 (577)
T COG0018 306 DRVLQKS--DGTYLYFTR----------DIAYHLYKFERGFDKLIYVLGAD----QHGHFKQLKAVLELLGYGPDKEVLL 369 (577)
T ss_pred CeEEEEc--CCCeeeehh----------HHHHHHHHHhcCCCEEEEEeCCc----chhHHHHHHHHHHHhcCCCccceEE
Confidence 5666554 444333333 223344445 5667789999999 77776555442 22333335667
Q ss_pred eeeeeee---CCcccccccCCccCHHHHHHhcC----------------------chHHHHHHhhcCCCCCcccCHHHHH
Q 014658 156 HNGHVTN---NNEKMSKSLGNFFTIRQITERYH----------------------PLALRHFLISAHYRSPLNYSVLQLD 210 (421)
Q Consensus 156 h~g~l~~---~G~KMSKSlGN~i~~~dll~~yg----------------------~D~lR~~ll~~~~~~d~~fs~e~l~ 210 (421)
|.++-++ +|.||||..||+|+++|+++.-+ .+++||++++.+..+++.|+++.+.
T Consensus 370 h~~~~l~~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~l 449 (577)
T COG0018 370 HQGVGLVRGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKAL 449 (577)
T ss_pred EEEEeeeECCCCccccccCCceEEHHHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHH
Confidence 8766554 57899999999999999999888 9999999999999999999999987
Q ss_pred HHHH-H-------HHHHHHHHHHHHHhcCCcccC---CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 014658 211 SASD-A-------VFYIYQTLQDCEVALSPFQEH---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 279 (421)
Q Consensus 211 ~~~~-~-------l~~l~~~l~~~~~~~~~~~~~---~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~ 279 (421)
+-.. . ..|+.+.++.....-...... ......+.+|+..+.++...+.++. +++.++..... |++++
T Consensus 450 sfegNt~pYvQYA~ARi~SIlrka~e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~~~~Ph~la~Y-L~~LA 527 (577)
T COG0018 450 SFEGNTAPYVQYAHARICSILRKAGEDELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-EELEPHRLANY-LYDLA 527 (577)
T ss_pred hccCCCchhHHHHHHHHHHHHHhccccccccccccchhccChHHHHHHHHHHHhHHHHHHHH-HhcCchHHHHH-HHHHH
Confidence 6542 1 345555555433210000000 1112234678889999999999999 99999999999 99999
Q ss_pred HHHHHHHhhhcccCchh--hhhhhHHHHHHHHHHHHHHHhHhccCC
Q 014658 280 KFINSSLNMLKKKQPKQ--QQLSLIESLRKIENEVKEVLRILGLLP 323 (421)
Q Consensus 280 ~~~N~yi~~~~pw~~~~--~~~~~~~~l~~~~~~l~~~l~ilGi~~ 323 (421)
..+|+|++.+....... ...+++.++.++..+|...|.+|||.+
T Consensus 528 ~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~ 573 (577)
T COG0018 528 GSFNSFYNACPVLGAENEELRAARLALVKATRQVLKNGLDLLGIEA 573 (577)
T ss_pred HHHHHHHhhCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999988764322 344678899999999999999999964
No 60
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=6.6e-17 Score=165.18 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=157.4
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
-|.|.-..|.|..+.|..--.-.+.+++++ ||+|+ +++|.|+ .+|+|||||+.|.-+|..++++||+|++|+||+.+
T Consensus 553 fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInS 631 (1070)
T KOG0434|consen 553 FPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINS 631 (1070)
T ss_pred CchHhhhhccccccchhhHHHHHHHHHcCCCcchhe-eEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecC
Confidence 388888999999999998888888999986 67888 6679998 59999999999999999999999999999999998
Q ss_pred CC--CCCcccCHHHHHHHHHH-HHHHHHHHHHHHHhcCCccc--C---------CCCCCCChHHHHHHHHHHHHHHHHHH
Q 014658 197 HY--RSPLNYSVLQLDSASDA-VFYIYQTLQDCEVALSPFQE--H---------GKTARINPAAEDCINKLRDEFHARMS 262 (421)
Q Consensus 197 ~~--~~d~~fs~e~l~~~~~~-l~~l~~~l~~~~~~~~~~~~--~---------~~~~~~d~~l~~~l~~~~~~v~~a~~ 262 (421)
+. ...+.|.++.+.+.... +-.+||.++++.+....... + ....-.|+|++...++++.-+.+.|
T Consensus 632 PVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM- 710 (1070)
T KOG0434|consen 632 PVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM- 710 (1070)
T ss_pred ccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-
Confidence 65 67899999999998765 45778887766543221110 0 1122368999999999999999999
Q ss_pred hccChHHHHHHHHHHHHHHH-HHHHhhhcccCch-hhhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 263 DDLNTSHILTGAFQDALKFI-NSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 263 dd~~~~~Al~~~l~~~~~~~-N~yi~~~~pw~~~-~~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
+.|.+..++.. +..|+..+ |.|+.-+.--..+ .....+...|.++.++|..+.+++|-
T Consensus 711 ~~YrLytVvp~-llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaP 770 (1070)
T KOG0434|consen 711 DQYRLYTVVPR-LLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAP 770 (1070)
T ss_pred HheehhhhHHH-HHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999 99999855 8898765532111 11122455667777788888888884
No 61
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=99.72 E-value=6.8e-18 Score=179.95 Aligned_cols=86 Identities=31% Similarity=0.332 Sum_probs=71.1
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhh-
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS- 195 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~- 195 (421)
+|+|+.++|+|++++|..+.+..+.+++++ ||+++++| |+++. +|+|||||+||||+|.+++++||+|++|+|+++
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~h-G~vld~~G~KMSKS~GNvi~p~~ii~~yGaD~lRl~~~~~ 591 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITH-GFVLDEDGRKMSKSKGNVIDPEDIIEKYGADALRLWLASS 591 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE---EEETTSSB-BTTTTB--BHHHHHHHT-HHHHHHHHHHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchheeeec-ccccccceeecccCCCcccCHHHHHHHhCcHHHHHHHHhc
Confidence 489999999999999999999999999875 88888655 99985 899999999999999999999999999999995
Q ss_pred cCCCCCcccC
Q 014658 196 AHYRSPLNYS 205 (421)
Q Consensus 196 ~~~~~d~~fs 205 (421)
+.+.+|++||
T Consensus 592 ~~~~~D~~~s 601 (601)
T PF00133_consen 592 ADPGQDINFS 601 (601)
T ss_dssp S-TTS-EEE-
T ss_pred CCcccCcccC
Confidence 6999999997
No 62
>PLN02286 arginine-tRNA ligase
Probab=99.71 E-value=9.9e-16 Score=162.00 Aligned_cols=274 Identities=11% Similarity=0.051 Sum_probs=185.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCcc
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 81 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF 81 (421)
+.|||.- +.. --|-|-+.+-+.++.|.++|++|+.+|.++++.+. +| .|.
T Consensus 250 ~~l~V~f-d~~-ges~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~---~~-------------------------~~~ 299 (576)
T PLN02286 250 QRLRVEL-EEK-GESFYNPYIPGVIEELESKGLVVESDGARVIFVEG---FD-------------------------IPL 299 (576)
T ss_pred HHhCCee-eec-CchhhhhhHHHHHHHHHHCCCEEeeCCceEeeccC---CC-------------------------Cce
Confidence 3566652 321 22335566788899999999999999999985421 11 145
Q ss_pred cccccccCCCCcccCCCCCCCCCCchhhHHHHHhh--cCCCceEEeecccCcCcchHHHHHHH---HhccCCCC---CcE
Q 014658 82 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY--LSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSN---VSY 153 (421)
Q Consensus 82 ~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~--lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~---~~~ 153 (421)
+|=|. +|.+.+-++ ..++..+++ +|..--|.+.|.| |+.+...+. .+++..+. .++
T Consensus 300 vl~ks--DGt~tY~t~----------DIA~~~~k~~~~~~d~~IyVvg~~----q~~hf~~v~~~l~~lG~~~~~~~~~l 363 (576)
T PLN02286 300 IVVKS--DGGFNYAST----------DLAALWYRLNEEKAEWIIYVTDVG----QQQHFDMVFKAAKRAGWLPEDTYPRL 363 (576)
T ss_pred EEEEC--CCchhhHHH----------HHHHHHHHHhccCCCEEEEEEeCc----HHHHHHHHHHHHHHcCCCccccCCce
Confidence 55554 444433332 233333333 3445568899999 777764443 44442212 122
Q ss_pred -EEeeeeee-eCCcccccccCCccCHHHHHHh-----------------------------cCchHHHHHHhhcCCCCCc
Q 014658 154 -WMHNGHVT-NNNEKMSKSLGNFFTIRQITER-----------------------------YHPLALRHFLISAHYRSPL 202 (421)
Q Consensus 154 -~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~-----------------------------yg~D~lR~~ll~~~~~~d~ 202 (421)
.+..|+|+ .+|.||||+.||+|+++|++++ .|.+++||++|+.+..+++
T Consensus 364 ~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~ 443 (576)
T PLN02286 364 EHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNY 443 (576)
T ss_pred EEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCC
Confidence 23458886 5888999999999999999993 5789999999999999999
Q ss_pred ccCHHHHHHHHH--------HHHHHHHHHHHHHHhcCCccc---CCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHH
Q 014658 203 NYSVLQLDSASD--------AVFYIYQTLQDCEVALSPFQE---HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL 271 (421)
Q Consensus 203 ~fs~e~l~~~~~--------~l~~l~~~l~~~~~~~~~~~~---~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al 271 (421)
+|+++.+..... ...|+.+.++.+......... .....+.+..|+..+..+.+.+..+. +++.++..+
T Consensus 444 ~Fd~d~~l~~~g~t~pYlQYahAR~~SIlrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~-~~~~P~~l~ 522 (576)
T PLN02286 444 TFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEAC-TDLLPNRLC 522 (576)
T ss_pred ccCHHHHHhhcCCChHHHHHHHHHHHHHHHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhcCchHHH
Confidence 999999755431 124555555433210000000 01112334677888999999999998 999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 272 TGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 272 ~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
.. ++++++.+|+|++.+........ ..++.++.++..+|...|.+|||.+.
T Consensus 523 ~Y-l~~LA~~F~~fY~~~~Vl~~~~~-~aRL~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 523 EY-LYNLSEKFTKFYSNCKVNGSEEE-TSRLLLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred HH-HHHHHHHHHHHHhcCccCCCCch-hHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 99 99999999999987754432222 56888999999999999999999753
No 63
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.68 E-value=5.7e-17 Score=168.53 Aligned_cols=198 Identities=22% Similarity=0.241 Sum_probs=150.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee--CCcEEEeccCCCCccccc-cccc---------hhhhCCC-
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV--EGDVFFAVEKSPNYGRLS-GQRL---------ENNRAGE- 67 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~--~~~vyf~v~~~~~Yg~ls-~~~~---------~~~~~g~- 67 (421)
|+.||+. ++..+++|+|++.+.+++++|+++|+||.- ++.. | .+...+|..+ .+++ ++|..|.
T Consensus 162 L~wLGl~-wD~~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee-~--~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~ 237 (567)
T PRK04156 162 LKWLGVK-WDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEE-F--KELRDAGKPCPHRDKSPEENLELWEKMLDGEY 237 (567)
T ss_pred HHHcCCC-CCCccCcccCHHHHHHHHHHHHHcCCCccCCCCHHH-H--HHHHhcCCCCCCcCCCHHHHHHHHHHhhcCcc
Confidence 3568995 699999999999999999999999999963 2222 1 2223345444 2221 2333444
Q ss_pred -------CccccccccCC--CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcC---cch
Q 014658 68 -------RVAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF---PHH 135 (421)
Q Consensus 68 -------~v~~~~~K~~p--~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~---pH~ 135 (421)
|+..+....|| +||++|+......|. ||.++++|++ ..|..++|-|..|+++++ .|+
T Consensus 238 ~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~~----~Gd~~~i~Pt-------Y~fA~~VDD~l~GITHViRg~d~~ 306 (567)
T PRK04156 238 KEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPR----VGDKYRVWPT-------YNFAVAVDDHLLGVTHVLRGKDHI 306 (567)
T ss_pred ccCCeEEEEECcccCCCCCccccEEEEEcCCCccc----cCCCeEEEEE-------eccCceeeecCCCCCeEEcccccc
Confidence 44445556777 899999985544443 8999999986 267778999999999999 999
Q ss_pred HHHHHHHHhcc--CCCCCcEEEeeeeeeeCCccccccc-------C--------CccCHHHHHHh-cCchHHHHHHhhcC
Q 014658 136 ENEIAQSCAAC--QDSNVSYWMHNGHVTNNNEKMSKSL-------G--------NFFTIRQITER-YHPLALRHFLISAH 197 (421)
Q Consensus 136 ~~~~a~~~a~~--~~~~~~~~~h~g~l~~~G~KMSKSl-------G--------N~i~~~dll~~-yg~D~lR~~ll~~~ 197 (421)
.+.+.|...+. +-+++ .|+|.+.|+.+|.|||||. | +..++..+... |.|+++|.|++..+
T Consensus 307 ~~t~~Q~~l~~~Lg~~~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG 385 (567)
T PRK04156 307 DNTEKQRYIYDYFGWEYP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVG 385 (567)
T ss_pred cChHHHHHHHHHcCCCCc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 99999986543 33434 5599999999999999998 5 45677887775 99999999999877
Q ss_pred CC-CCcccCHHHHHHHHH
Q 014658 198 YR-SPLNYSVLQLDSASD 214 (421)
Q Consensus 198 ~~-~d~~fs~e~l~~~~~ 214 (421)
++ ++..|+++.|....+
T Consensus 386 ~s~~~~~~~~~~L~~~nr 403 (567)
T PRK04156 386 VKETDATISWENLYAINR 403 (567)
T ss_pred CCCCCcccCHHHHHHHHH
Confidence 75 899999999987654
No 64
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=5.7e-16 Score=159.50 Aligned_cols=163 Identities=23% Similarity=0.182 Sum_probs=129.3
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~- 196 (421)
+|+|+.++|||||..|..+.+..+.|++. +.|++-+-.+||+++|++|||||.|||.|+.+.+++||+|+.|+.|..+
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAG 741 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeeccc
Confidence 69999999999999999999999999987 4788877899999999999999999999999999999999999999885
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---cCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ---EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 273 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~---~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~ 273 (421)
.-..|.||....... .+-||++-+..+.+++.... .+....-.|+-+.+.++.++..-.+++ ++.++..|+..
T Consensus 742 D~veDANF~ea~AnA---aILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~ 817 (1080)
T KOG0437|consen 742 DGVEDANFVEANANA---AILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAY-EDTLFKDALKY 817 (1080)
T ss_pred CCcccchhHHhcccH---HHHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh
Confidence 778899998766443 45567776666655543211 111112346677888899999999999 89999999987
Q ss_pred HHHHHHHHHHHH
Q 014658 274 AFQDALKFINSS 285 (421)
Q Consensus 274 ~l~~~~~~~N~y 285 (421)
-++++...=..|
T Consensus 818 Gfyd~qaArD~Y 829 (1080)
T KOG0437|consen 818 GFYDLQAARDMY 829 (1080)
T ss_pred hhHHHHHHHHHH
Confidence 455654433333
No 65
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.60 E-value=4.8e-15 Score=154.61 Aligned_cols=118 Identities=21% Similarity=0.252 Sum_probs=96.4
Q ss_pred CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHH-hccCCCCCcEEEeeeeeeeC-CcccccccCCccC
Q 014658 99 GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC-AACQDSNVSYWMHNGHVTNN-NEKMSKSLGNFFT 176 (421)
Q Consensus 99 g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~-a~~~~~~~~~~~h~g~l~~~-G~KMSKSlGN~i~ 176 (421)
|.|--.|.++. +|-..+|| +|+-.+|+|+..+++.....++. +++.++|.. +|+||++.+ |+|||||+||+|+
T Consensus 216 g~~KL~Wr~dW-~~rW~~l~--Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~ 290 (510)
T PRK00750 216 GHGKLQWKVDW-PMRWAALG--VDFEPFGKDHASASYDTSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVIT 290 (510)
T ss_pred CCcccCCCCCc-HHHHHHcC--CCEEeeCcccCcchHHHHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccC
Confidence 66778899997 78888996 89999999988865555556665 666665533 567999987 9999999999999
Q ss_pred HHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHHHHHHHHHH
Q 014658 177 IRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDAVFYIYQTL 223 (421)
Q Consensus 177 ~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~l~~l~~~l 223 (421)
|.|+++.|++|++|||++. .++.++++|+. +..+.+.+.++.+.+
T Consensus 291 ~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~--l~~~~dey~rl~~~~ 336 (510)
T PRK00750 291 IEDWLEYAPPESLRLFMFARPKPAKRLDFDV--IPKLVDEYDRFERKY 336 (510)
T ss_pred HHHHHHHCCHHHHHHHHHhCCCCCCCCcccH--HHHHHHHHHHHHHHH
Confidence 9999999999999988875 58999999999 777777766665554
No 66
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.6e-14 Score=147.89 Aligned_cols=195 Identities=15% Similarity=0.107 Sum_probs=143.4
Q ss_pred cccCCCCCCCC------CCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc-------CCCCCcEEEeeee
Q 014658 93 SWDSPWGPGRP------GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC-------QDSNVSYWMHNGH 159 (421)
Q Consensus 93 ~w~spwg~grP------gWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~-------~~~~~~~~~h~g~ 159 (421)
+-+|.|..-|. -=.+. .+.+++.. |+||++||+++.--|..|-..++.-+. .+||.++ +..|+
T Consensus 497 FvDSsWYYlRylDpkN~e~~~d-~a~a~k~M--PVDvYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~L-i~QGm 572 (876)
T KOG0435|consen 497 FVDSSWYYLRYLDPKNPEEPFD-KAKAKKNM--PVDVYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKL-ITQGM 572 (876)
T ss_pred hhccceeeEeecCCCCcccccc-hhhhhccC--ceeEEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHH-Hhhhc
Confidence 34788875443 11111 24444454 999999999999999999988876553 2577776 44466
Q ss_pred eee-------CC-------------------------------cccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCC
Q 014658 160 VTN-------NN-------------------------------EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRS 200 (421)
Q Consensus 160 l~~-------~G-------------------------------~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~ 200 (421)
|.- .| +|||||++|+|+|.+++.+||+|++|+|+|.. ++++
T Consensus 573 V~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~ 652 (876)
T KOG0435|consen 573 VRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRD 652 (876)
T ss_pred ccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCccc
Confidence 520 11 59999999999999999999999999999985 9999
Q ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccCCCC----CCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 014658 201 PLNYSVLQLDSASDAVFYIYQTLQDCEVA--LSPFQEHGKT----ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 274 (421)
Q Consensus 201 d~~fs~e~l~~~~~~l~~l~~~l~~~~~~--~~~~~~~~~~----~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~ 274 (421)
+++|+...+....+.+.++|+....+.+. .......... ...++.+.+..+.++..+++++...+.++.||+.
T Consensus 653 ~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~- 731 (876)
T KOG0435|consen 653 PINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISD- 731 (876)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-
Confidence 99999999999999999999987765443 1111111111 1223567788899999999999888999999999
Q ss_pred HHHHHHHHHHHHhhhccc
Q 014658 275 FQDALKFINSSLNMLKKK 292 (421)
Q Consensus 275 l~~~~~~~N~yi~~~~pw 292 (421)
+|.|.+.+.+-......|
T Consensus 732 ~m~ltN~l~~a~k~~~~h 749 (876)
T KOG0435|consen 732 MMGLTNALKKALKIVLVH 749 (876)
T ss_pred HHHHHHHHHHhhhhhhhc
Confidence 999888766654443333
No 67
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.55 E-value=2.5e-14 Score=141.82 Aligned_cols=126 Identities=18% Similarity=0.144 Sum_probs=91.3
Q ss_pred CCCcccCCC-CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCc--chHHHHHHHH-hccCCCCCcEEEeeeeeeeCCc
Q 014658 90 GEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP--HHENEIAQSC-AACQDSNVSYWMHNGHVTNNNE 165 (421)
Q Consensus 90 ~~~~w~spw-g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~p--H~~~~~a~~~-a~~~~~~~~~~~h~g~l~~~G~ 165 (421)
|.-.+-+.. |.|--.|.++. +|-..++| +|+-+.|+|+.-+ ...-..+++. +++.++|. . +.+||++++|.
T Consensus 199 G~~g~~~~~~g~~KL~Wr~dW-~~rW~~l~--Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~-~-~~ye~V~l~gg 273 (353)
T cd00674 199 GHEETVDIRTGRGKLTWRVDW-PMRWAILG--VDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPV-P-VMYEFIGLKGG 273 (353)
T ss_pred CCEEEEeecCCCcccCCCCCc-hhhhhhcC--CCEEeeCccccccccHHHHHHHHHHHHhCCCCCe-E-EEeeeEEeCCC
Confidence 433333343 67888899987 67788886 8999999996654 1222333444 66655553 3 34599998775
Q ss_pred -ccccccCCccCHHHHHHhcCchHHHHHHhhcC-CCCCcccCHHHHHHHHHHHHHHHH
Q 014658 166 -KMSKSLGNFFTIRQITERYHPLALRHFLISAH-YRSPLNYSVLQLDSASDAVFYIYQ 221 (421)
Q Consensus 166 -KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~-~~~d~~fs~e~l~~~~~~l~~l~~ 221 (421)
|||||+||+|+|.|+++.+|+|++|||+++.+ ..++++|+.+.. .....+.++.+
T Consensus 274 ~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd~~~~-~~~dey~r~~~ 330 (353)
T cd00674 274 GKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFDLDIL-RLYDEYDRLER 330 (353)
T ss_pred CccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcChhHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999986 889999998644 33444444433
No 68
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.54 E-value=3.9e-14 Score=147.01 Aligned_cols=129 Identities=13% Similarity=0.159 Sum_probs=97.6
Q ss_pred CCCCcccCCC-CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcc----hHHHHHHHHhccCCCCCcEEEeeeeee--
Q 014658 89 AGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPH----HENEIAQSCAACQDSNVSYWMHNGHVT-- 161 (421)
Q Consensus 89 ~~~~~w~spw-g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH----~~~~~a~~~a~~~~~~~~~~~h~g~l~-- 161 (421)
.|.-.+-+.. |.|--.|.++. +|-..+|| +|+-..|+||.-+- ....+|+ +++++.||..+ .. +|+.
T Consensus 196 cG~~g~~~~~~g~~KL~WkvdW-~~RW~~lg--V~~Ep~GkDH~~~ggsy~~~~~ia~-~~l~~~~P~~~-~y-e~v~L~ 269 (515)
T TIGR00467 196 CGNQESVDIYTGAIKLPWRVDW-PARWKIEK--VTFEPAGKDHAAAGGSYDTGVNIAK-EIFQYSPPVTV-QY-EWISLK 269 (515)
T ss_pred CCCEEEEeecCCCcccCCCCCc-HhhHhhhC--cccccCCCCccCccCCchhHHHHHH-HHhCCCCCcCc-EE-EEEEEc
Confidence 4544444444 67888899987 78888896 89999999965432 2333444 56766665443 32 5554
Q ss_pred eCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Q 014658 162 NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQ 224 (421)
Q Consensus 162 ~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~ 224 (421)
.+|+|||||+||+|++.|+++.+++|++|||+++.+++++++|+.+.+ ++.+.+.++.+.+.
T Consensus 270 ~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~~~~~ldFd~~~l-~~~dey~r~~~~~~ 331 (515)
T TIGR00467 270 GKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEFHISFDLDVI-KLYEDYDKFERFYY 331 (515)
T ss_pred CCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccCCCCCCcCCHHHH-HHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999988 77777766665543
No 69
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.25 E-value=2.9e-11 Score=112.73 Aligned_cols=127 Identities=16% Similarity=0.108 Sum_probs=88.6
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
|++|||. ++.++|.|++++.|+++|+.|+++|+||+.+|.+||+++++. .. .|
T Consensus 78 ~~~L~i~-~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~-------------------------~~-~d 130 (212)
T cd00671 78 YGRLDVR-FDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFG-------------------------DD-KD 130 (212)
T ss_pred HHHhCCc-CceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhC-------------------------CC-CC
Confidence 4689998 799999999999999999999999999999999999987551 11 27
Q ss_pred ccccccccCCCCcccCCCCCCCCCCch-hhHHHHHhh-cCCCceEEeecccCcCcchHHHHHH---HHhccCCCCCcEEE
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHI-ECSAMSAHY-LSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWM 155 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhi-ecsam~~~~-lg~~~Dih~gG~Dli~pH~~~~~a~---~~a~~~~~~~~~~~ 155 (421)
++|.|+ +|.+ ..+. .+++...++ ++...-|.+.|.| |+.+.+.+ +.+++..+..++ .
T Consensus 131 ~vl~rs--dG~~-----------~Y~~~DlA~~~~~~~~~~~~~i~v~g~~----~~~~~~~~~~~~~~lg~~~~~~~-~ 192 (212)
T cd00671 131 RVLVRS--DGTY-----------TYFTRDIAYHLDKFERGADKIIYVVGAD----HHGHFKRLFAALELLGYDEAKKL-E 192 (212)
T ss_pred eEEEEC--CCCc-----------cchHHHHHHHHHHHhcCCCEEEEEECCC----HHHHHHHHHHHHHHcCCCCCCCe-E
Confidence 888886 4444 3332 222223333 2444557899999 55554444 444543322333 4
Q ss_pred ee--eeeeeC-CcccccccC
Q 014658 156 HN--GHVTNN-NEKMSKSLG 172 (421)
Q Consensus 156 h~--g~l~~~-G~KMSKSlG 172 (421)
|. |+|+.. |.||||+.|
T Consensus 193 h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 193 HLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred EEEEEeEEcCCCCCCCCCCC
Confidence 44 888865 999999987
No 70
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.19 E-value=2.1e-11 Score=120.11 Aligned_cols=126 Identities=20% Similarity=0.202 Sum_probs=71.9
Q ss_pred CCCCcccCCC-CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHh--ccC-CCCCcEEEeeeeeeeCC
Q 014658 89 AGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA--ACQ-DSNVSYWMHNGHVTNNN 164 (421)
Q Consensus 89 ~~~~~w~spw-g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a--~~~-~~~~~~~~h~g~l~~~G 164 (421)
.|+-.+-+.. |.|-..|.++. +|-..++| +|+-..||||.-+-..+-.+.-.| +++ +||..+ .-+|++++|
T Consensus 205 cG~~g~~~i~~g~gKL~WkvDW-~mRW~~lg--VdfEp~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~--~YE~~~~~g 279 (360)
T PF01921_consen 205 CGHEGEVDITGGNGKLQWKVDW-PMRWAALG--VDFEPFGKDHASPGGSYDTSKRIAREILGYEPPVPF--PYEFFLDKG 279 (360)
T ss_dssp TS---EEETTTT-EEE-HHHHH-HHHHHHTT---SEEEEEHHHHCTTSHHHHHHHHHHHCC-----EEE--EE--EEES-
T ss_pred CCCEEEEecCCCcccccCCCcC-hhhhhhcC--ceeccCCCccCCCCCChhhHHHHHHHHhCCCCCCCC--CeeEEEeCC
Confidence 3443333333 46788899997 78888996 899999999777666666665544 344 555433 459999987
Q ss_pred c-ccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHH-HHHHHHHHHHHH
Q 014658 165 E-KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL-QLDSASDAVFYI 219 (421)
Q Consensus 165 ~-KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e-~l~~~~~~l~~l 219 (421)
. |||||+||+++|.|+++-+.|+.|||++++..+.+..+|+.+ .+-...+.+.++
T Consensus 280 ~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P~~~~~~~~~~~i~~~~Deyd~~ 336 (360)
T PF01921_consen 280 GGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKPNKAKDFSFDLVIPRLYDEYDRL 336 (360)
T ss_dssp -------------HHHHHTTS-HHHHHHHHHCS-TTS-EEE--STTHHHHHHHHHHH
T ss_pred CcccccCCCCccCHHHHHHhcCHHHHHHHHcccCCCcceEeccCcchHHHHHHHHHH
Confidence 6 999999999999999999999999999999888888888888 666666554443
No 71
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.2e-10 Score=116.00 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=92.6
Q ss_pred CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHh--ccC-CCCCcEEEeeeeeeeCC-cccccccCCc
Q 014658 99 GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA--ACQ-DSNVSYWMHNGHVTNNN-EKMSKSLGNF 174 (421)
Q Consensus 99 g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a--~~~-~~~~~~~~h~g~l~~~G-~KMSKSlGN~ 174 (421)
|.|--.|.++. +|-..+|| +|+-.-||||.-+-..|.-+...+ +++ +||..+ +- .|++++| +|||||+||+
T Consensus 211 g~~KL~WRvdW-p~RW~~lg--Vd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~-~Y-E~i~lkg~~~mSsSkG~~ 285 (521)
T COG1384 211 GEGKLPWRVDW-PMRWAALG--VDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPF-VY-EWILLKGGGKMSSSKGNV 285 (521)
T ss_pred cCcccccCcCc-cchhhccC--cccccCCcccccccCchHHHHHHHHHhcCCCCCCCC-ce-EEEEecCCcccccCCCcE
Confidence 34556688886 67778886 899999999777776676655444 345 676666 43 8999877 9999999999
Q ss_pred cCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHH-HHHHHHHHHHHHH
Q 014658 175 FTIRQITERYHPLALRHFLISAHYRSPLNYSVLQ-LDSASDAVFYIYQ 221 (421)
Q Consensus 175 i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~-l~~~~~~l~~l~~ 221 (421)
|++.|.++-+.++.+||+++++.+.+.++|+.+. |-+..+.+.++-+
T Consensus 286 i~~~dwlev~~pE~lry~~~r~kP~r~~~~d~~~~il~lvDEydr~e~ 333 (521)
T COG1384 286 ISLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDLGILKLVDEYDRLER 333 (521)
T ss_pred EcHHHHHHhcCHhHeeeeeeecCCCcceecCCCCChhHHHHHHHHHHH
Confidence 9999999999999999999999888888888887 7666665544433
No 72
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.85 E-value=3.2e-09 Score=106.47 Aligned_cols=147 Identities=19% Similarity=0.217 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCcccccccccCCCCcccCC
Q 014658 18 HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSP 97 (421)
Q Consensus 18 ~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~sp 97 (421)
+-+.+.+.++.|.++|++|+.+|.++++++.+ |. .| |++|=|. +|-+.+-+.
T Consensus 173 ~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~---g~-------------------~k----~~Vl~ks--DGt~~Y~tr 224 (354)
T PF00750_consen 173 YSGKVDEVLERLKEKGLLYESDGALWIDLTKF---GD-------------------DK----DRVLRKS--DGTSTYLTR 224 (354)
T ss_dssp HTTHHHHHHHHHHCTTTEEEETTEEEEEGCCT---ST-------------------SS-----EEEEET--TSEB-HHHH
T ss_pred hhhHHHHHHHHHHhCCcEEecCCcEEEechhc---CC-------------------CC----cceEEcC--CCceEEEcc
Confidence 45667888999999999999999999998865 31 11 4556554 344333222
Q ss_pred CCCCCCCCchhhHHHHHhh--cCCCceEEeecccCcCcchHHH---HHHHHhccCCC-CCcEE-Eeeeeeee-CCc-ccc
Q 014658 98 WGPGRPGWHIECSAMSAHY--LSSKFDIHGGGIDLIFPHHENE---IAQSCAACQDS-NVSYW-MHNGHVTN-NNE-KMS 168 (421)
Q Consensus 98 wg~grPgWhiecsam~~~~--lg~~~Dih~gG~Dli~pH~~~~---~a~~~a~~~~~-~~~~~-~h~g~l~~-~G~-KMS 168 (421)
..++...++ ++..--|++.|.| |+.+. .+.+.+++..+ -.++. +..|+++. +|+ |||
T Consensus 225 ----------DiA~~~~r~~~~~~d~~iyV~~~~----q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~ms 290 (354)
T PF00750_consen 225 ----------DIAYHLYRFEEYGFDKIIYVVGAD----QKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKVKMS 290 (354)
T ss_dssp ----------HHHHHHHHHCCSS-SEEEEEEEGG----GHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-
T ss_pred ----------hHHHHHHHHhhhccccEEEEecCc----hhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCcccc
Confidence 233333444 4555678999999 55544 34444454322 23342 33355543 776 899
Q ss_pred cccCCccCHHHHHH--------------------------hcCchHHHHHHhhcCCCCCcccCH
Q 014658 169 KSLGNFFTIRQITE--------------------------RYHPLALRHFLISAHYRSPLNYSV 206 (421)
Q Consensus 169 KSlGN~i~~~dll~--------------------------~yg~D~lR~~ll~~~~~~d~~fs~ 206 (421)
++.||+|++.|+++ ..|..++||++|+....+++.|+|
T Consensus 291 tR~G~~i~l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 291 TRKGNVITLDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp TTTTSSTBHHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred CCCCCceEHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 99999999999999 567788888888887778887764
No 73
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.83 E-value=2.2e-08 Score=94.21 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=103.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCc
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 80 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~D 80 (421)
|+.||+ +|+..++.|+|++.+.+++++|+++|+||. .++ . -.|
T Consensus 62 L~wLGl-~~d~~~~qS~r~~~y~~~~~~Li~~G~aY~------------------~~~------~------------~~~ 104 (240)
T cd09287 62 LEWLGV-KWDEVVIASDRIELYYEYARKLIEMGGAYV------------------HPR------T------------GSK 104 (240)
T ss_pred HHHcCC-CCCCccchhccHHHHHHHHHHHHHcCCccc------------------Ccc------c------------CCc
Confidence 467999 588999999999999999999999999997 000 0 125
Q ss_pred ccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeee
Q 014658 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV 160 (421)
Q Consensus 81 F~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l 160 (421)
|.+| |..|..| +.-....| ++.-+=|.|++- ....-+.+..+++.++ +.+ .|...+
T Consensus 105 ~~i~------------------ptY~la~-vVDD~~~g--IThViRg~d~~~-~t~~q~~l~~~Lg~~~-P~~-~H~pll 160 (240)
T cd09287 105 YRVW------------------PTLNFAV-AVDDHLLG--VTHVLRGKDHID-NTEKQRYIYEYFGWEY-PET-IHWGRL 160 (240)
T ss_pred EEEE------------------Eccccce-eeeccccC--CCeEEechhhhh-CCHHHHHHHHHcCCCC-CcE-Eeeeee
Confidence 6653 7778754 33233344 444445788443 2223333445665444 445 699999
Q ss_pred eeCCcccccccCC------c---------cCHHHHHH-hcCchHHHHHHhhc-CCCCCcccCHHHHHHHH
Q 014658 161 TNNNEKMSKSLGN------F---------FTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSAS 213 (421)
Q Consensus 161 ~~~G~KMSKSlGN------~---------i~~~dll~-~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~ 213 (421)
+.+|.||||+.+- . .++..+.+ .|.|++++-|+..- --.++..++++.|....
T Consensus 161 ~~~~~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~ 230 (240)
T cd09287 161 KIEGGKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAIN 230 (240)
T ss_pred cCCCCeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHH
Confidence 9999999999842 1 34445444 58999999888774 33577789998887643
No 74
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.80 E-value=4.9e-09 Score=91.53 Aligned_cols=65 Identities=26% Similarity=0.216 Sum_probs=57.6
Q ss_pred CchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeee-CCccccccc
Q 014658 105 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSL 171 (421)
Q Consensus 105 Whiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~-~G~KMSKSl 171 (421)
||++|++++..+.+...++|++|+|+.+ |+.+..+++++++... +..++|.|+|+. +|+|||||+
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~-~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPA-RPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCC-CceEEEeCCeECCCCCcCCCCC
Confidence 9999999999998888999999999999 9999999999997542 346789999997 569999995
No 75
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=98.73 E-value=2.3e-07 Score=80.11 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=69.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-C---CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Q 014658 204 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-H---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 279 (421)
Q Consensus 204 fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~-~---~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~ 279 (421)
||++.+..+.+.+.++||....+......... . ......+.+++..+..+...+..+| +.+++++|++. +++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATA-LYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHH
Confidence 68889998889999999998865432121111 0 1112345788899999999999999 99999999999 99999
Q ss_pred H--HHHHHHhhhcccC
Q 014658 280 K--FINSSLNMLKKKQ 293 (421)
Q Consensus 280 ~--~~N~yi~~~~pw~ 293 (421)
. .+|+|++..+||.
T Consensus 79 ~~~~~N~Yi~~~~pW~ 94 (135)
T cd07962 79 WNDFCDWYLELVKPRL 94 (135)
T ss_pred HHHHhHHHHHHhhHHH
Confidence 7 7999999999995
No 76
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=98.59 E-value=7.8e-07 Score=78.83 Aligned_cols=140 Identities=11% Similarity=0.014 Sum_probs=98.2
Q ss_pred hcCchHHHHHHhhcCCCCCcccCHHHHHHHHH--------HHHHHHHHHHHHHHhcC---CcccCCCCCCCChHHHHHHH
Q 014658 183 RYHPLALRHFLISAHYRSPLNYSVLQLDSASD--------AVFYIYQTLQDCEVALS---PFQEHGKTARINPAAEDCIN 251 (421)
Q Consensus 183 ~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~--------~l~~l~~~l~~~~~~~~---~~~~~~~~~~~d~~l~~~l~ 251 (421)
..|.|++||++|+....++++|+++.+..... .+.|+.|.++....... .........+.+..++..+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 46789999999999999999999998665431 12344444332210000 00000011223455677788
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCch-hhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 252 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 252 ~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~-~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
.+.+.+..++ .+.+++.++.. +.++...+|.|++....-.+. .....++..+.++..++..++.+|||.+.
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~ 153 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATY-LFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAP 153 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHH-HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8888888888 89999999999 999999999999977554322 23345788899999999999999999764
No 77
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=98.47 E-value=3.9e-06 Score=71.15 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHH-HhcCCccc-CCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcc
Q 014658 214 DAVFYIYQTLQDCE-VALSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 291 (421)
Q Consensus 214 ~~l~~l~~~l~~~~-~~~~~~~~-~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~p 291 (421)
+.++|+.+++..+. .......+ .......+.+++..++++..++.++| ++|++++|++. ++++++.+|+|++..+|
T Consensus 7 ~~~gnll~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-~~~~~~~~n~y~~~~kp 84 (129)
T cd07957 7 NNLGNLVNRTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAM-EELEFRKALEE-IMELARAANKYIDETAP 84 (129)
T ss_pred hhHhhHHHHHHHHHHHHcCCcCCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-HHHHHHHHHhhhccCCC
Confidence 45566666654332 22222111 11123567899999999999999999 89999999999 99999999999999999
Q ss_pred cCchhh--hhhhHHHHHHHHHHHHHHHhHhc
Q 014658 292 KQPKQQ--QLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 292 w~~~~~--~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
|..... .......+..+...++.++.+|.
T Consensus 85 w~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~ 115 (129)
T cd07957 85 WKLAKEEDPERLATVLYVLLELLRILAILLS 115 (129)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 962211 11122334444455555555555
No 78
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=98.46 E-value=3.5e-06 Score=76.34 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=89.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Q 014658 204 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 277 (421)
Q Consensus 204 fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~ 277 (421)
|+.+.+.+..+.+.++||.++++...+..+... ......|++++..++.+..++.++| ++|+++.|++. +++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~-i~~ 78 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQA-LNN 78 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHH
Confidence 567888888888899999988776554432211 1123467899999999999999999 89999999999 999
Q ss_pred HHH--HHHHHHhhhcccCch--hhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 278 ALK--FINSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 278 ~~~--~~N~yi~~~~pw~~~--~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
|+. .+|.|++..+||.-. ...+.+......+...+..++.+|. |+|- ..+++++.+
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~-~aeel~~~l 139 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPF-TAEEVWEHL 139 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhh-hHHHHHHhc
Confidence 996 679999999998521 1111122233344556666777777 3454 455555544
No 79
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.44 E-value=3.7e-06 Score=70.04 Aligned_cols=103 Identities=7% Similarity=0.110 Sum_probs=73.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 014658 204 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 283 (421)
Q Consensus 204 fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N 283 (421)
|+++.+....|.+.|+++.+...................|+++++.+.++.+++.++| ++|++++|++. ++++++.+|
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n 78 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAA-LMELVNALY 78 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccccccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHH-HHHHHHHHH
Confidence 5777888888888888887654221111000001223467899999999999999999 89999999999 999999999
Q ss_pred HHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 284 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 284 ~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
+|++..+|+ ...+...++.++.+|.
T Consensus 79 ~~~~~~~p~------------~~~~~~~l~~~~~lL~ 103 (117)
T cd07958 79 KYKKKDAQH------------AAVLREALETLVLLLA 103 (117)
T ss_pred Hhhccccch------------HHHHHHHHHHHHHHHc
Confidence 999876652 2234455555555555
No 80
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.39 E-value=4.8e-06 Score=86.49 Aligned_cols=186 Identities=18% Similarity=0.231 Sum_probs=105.4
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEecc--------------CCCCc-cccccccchhh---
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE--------------KSPNY-GRLSGQRLENN--- 63 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~--------------~~~~Y-g~ls~~~~~~~--- 63 (421)
+-||+..-.-..+-|++++...+++++|+++|+||. .||+. ..+.| |.-.+...++.
T Consensus 61 ~wlGl~~de~~~~QS~r~~~y~~~~~~L~~~g~aY~-----C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~ 135 (470)
T TIGR00464 61 KWLGISWDEGPYYQSQRLDIYKKYAKELLEEGLAYR-----CYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENK 135 (470)
T ss_pred HHCCCCCCCCeeehhCCHHHHHHHHHHHHHcCCEEe-----cCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhH
Confidence 357776322455779999999999999999999994 22211 11223 22111111211
Q ss_pred -hCCCC----cccccc----------------ccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCce
Q 014658 64 -RAGER----VAVDSR----------------KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122 (421)
Q Consensus 64 -~~g~~----v~~~~~----------------K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~D 122 (421)
..|.+ ...+.. -..-.||+|.|. .|.|..|+.| ++-....| ++
T Consensus 136 ~~~g~~~~iR~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~Rs-------------dG~ptY~~A~-~vdD~~~~--it 199 (470)
T TIGR00464 136 LAKGIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELDDFVILRS-------------DGSPTYNFAV-VVDDYLMK--IT 199 (470)
T ss_pred HhcCCCceEEEEcCCCCceeEEecccceEEecCccCCCeEEEec-------------CCCcccccHH-HHHHHhCC--CC
Confidence 11221 000000 011134555444 3678888754 33233344 55
Q ss_pred EEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHh-cCc--------------
Q 014658 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHP-------------- 186 (421)
Q Consensus 123 ih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~-yg~-------------- 186 (421)
.-+-|.|++. |...-.+...+++.. .+ .+.|..++. .+|.||||+.| .+++.++.+. |-+
T Consensus 200 hvIrG~d~~~-~t~~~~~l~~aLg~~-~p-~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~ 275 (470)
T TIGR00464 200 HVIRGEDHIS-NTPKQILIYQALGWK-IP-VFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSP 275 (470)
T ss_pred EEEECchhhc-CHHHHHHHHHHcCCC-CC-eEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCC
Confidence 5558999444 333344445666533 33 447878754 68999999999 8899999886 344
Q ss_pred ----------hHHHHHHhhcCCCCCcccCHHHHHHH
Q 014658 187 ----------LALRHFLISAHYRSPLNYSVLQLDSA 212 (421)
Q Consensus 187 ----------D~lR~~ll~~~~~~d~~fs~e~l~~~ 212 (421)
+++|+|.++..-.+++.|+++.|.-.
T Consensus 276 ~~~~e~~~~~~~i~~f~l~~~~~~~~~fd~~kL~~~ 311 (470)
T TIGR00464 276 PDDQEFFSLEELIEIFSLNRVSKSPAKFDWKKLQWL 311 (470)
T ss_pred CCccccCCHHHHHHhcCcccCCCCCCeecHHHHHHH
Confidence 44555555554456677777765443
No 81
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.36 E-value=7.4e-06 Score=67.77 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 014658 207 LQLDSASDAVFYIYQTLQDCEVALSPFQEH---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 283 (421)
Q Consensus 207 e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~---~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N 283 (421)
+.+.+..+.+.++++.+..+.....+..+. ......|.+++..++.+.+++.++| ++|+++.|++. +++|++.+|
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~-i~~~~~~~n 79 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNAL-EALDPTTAVQE-LFKFTNELN 79 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHhcc
Confidence 345555555556666665544433221111 0113457899999999999999999 89999999999 999999999
Q ss_pred HHHhhhcccC
Q 014658 284 SSLNMLKKKQ 293 (421)
Q Consensus 284 ~yi~~~~pw~ 293 (421)
.|++..+||.
T Consensus 80 ~y~~~~~pw~ 89 (117)
T cd07375 80 WYLDELKPAL 89 (117)
T ss_pred HHHHHhhHHH
Confidence 9999999995
No 82
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=98.35 E-value=1.1e-05 Score=67.31 Aligned_cols=103 Identities=11% Similarity=-0.011 Sum_probs=72.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHH
Q 014658 204 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF-QDALKFI 282 (421)
Q Consensus 204 fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l-~~~~~~~ 282 (421)
|+.+.+....+.+.|+++.+....+ ...+.......|++++..++.+..++.++| ++|+++.|++. + +++.+.+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~-~~~~~~~~~ 75 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE---TEGELEELTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKE-GLYELQNDL 75 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---ccCCccccchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHH-HHHHHHHHH
Confidence 5677777666776666665543211 111111223567899999999999999999 89999999999 8 9999999
Q ss_pred HHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 283 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 283 N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
|.|++..+||. ....+...++.++.+|..
T Consensus 76 ~~Y~~~~~~~~----------~~~~~~~~l~~~~~lL~P 104 (117)
T cd07959 76 DWYRERGGAGM----------NKDLLRRFIEVWTRLLAP 104 (117)
T ss_pred HHHHHHhCccc----------hHHHHHHHHHHHHHHHcC
Confidence 99999888871 112345566666666663
No 83
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.28 E-value=4.6e-06 Score=86.64 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=125.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC------C----Ccccccccc----chhhhCCC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------P----NYGRLSGQR----LENNRAGE 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~------~----~Yg~ls~~~----~~~~~~g~ 67 (421)
+-||+. ++...+.|++.+.+.++.++|+++|.||.- |+.... . .|-.++... .+++..|.
T Consensus 71 ~WLGl~-wD~~~~qSdr~~~y~~~a~~Li~~G~AY~C-----~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~ 144 (523)
T PLN03233 71 GKIEIK-PDSVSFTSDYFEPIRCYAIILIEEGLAYMD-----DTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGK 144 (523)
T ss_pred HHhCCC-CCCCccccccHHHHHHHHHHHHHcCCeEec-----CCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhccc
Confidence 457887 688889999999999999999999999963 221110 0 111121100 11222221
Q ss_pred --------C--ccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHH
Q 014658 68 --------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 137 (421)
Q Consensus 68 --------~--v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~ 137 (421)
| ++....-.+-.||++.+....-.+..-..| .+.|-.|..| +......| ++.-+=|.|++- +..-
T Consensus 145 ~~~~~~~lR~K~d~~~~n~~~~D~Vi~R~d~~~h~~~Gd~~-~~~PtY~fA~-~VDD~l~g--ITHviRg~E~~~-~t~~ 219 (523)
T PLN03233 145 EEGGAWCLRAKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAY-KAYPTYDLAC-PIVDSIEG--VTHALRTTEYDD-RDAQ 219 (523)
T ss_pred ccCCCeEEEEeCcccCCCCCCcCCEEEEEcCCcccccCCcc-cceeccCCce-eeeccccC--CCeEEechhhhc-CCHH
Confidence 1 111112223369999997543344444556 7889999765 44444444 343344788544 2222
Q ss_pred HHHHHHhccCCCCCcEEEeeeeeeeCCccccccc------CCcc---------CHHHHHH-hcCchHHHHHHhhc-CCCC
Q 014658 138 EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSL------GNFF---------TIRQITE-RYHPLALRHFLISA-HYRS 200 (421)
Q Consensus 138 ~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSl------GN~i---------~~~dll~-~yg~D~lR~~ll~~-~~~~ 200 (421)
-..+..+++.++ +.+ .|-+++.+.|.||||+. .+.| |+..+-. .|.|+++|=|++.. .-..
T Consensus 220 q~~l~~aLg~~~-P~~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~ 297 (523)
T PLN03233 220 FFWIQKALGLRR-PRI-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRR 297 (523)
T ss_pred HHHHHHHhCCCC-Cee-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 333345565443 444 56788889999999997 3455 4777665 49999999999985 5577
Q ss_pred CcccCHHHHHHHHHH
Q 014658 201 PLNYSVLQLDSASDA 215 (421)
Q Consensus 201 d~~fs~e~l~~~~~~ 215 (421)
+..++++.|....+.
T Consensus 298 ~~~i~~~~l~~~nR~ 312 (523)
T PLN03233 298 VVNLDWAKFWAENKK 312 (523)
T ss_pred CceecHHHHHHHHHH
Confidence 889999999886543
No 84
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.24 E-value=1.2e-05 Score=83.84 Aligned_cols=203 Identities=18% Similarity=0.088 Sum_probs=122.6
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--------------CCCcccccccc-c---hhh
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQR-L---ENN 63 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--------------~~~Yg~ls~~~-~---~~~ 63 (421)
+-||+.+-+-....|+|++.+.+++++|+++|.||.- |+... ...|-.+|... + +++
T Consensus 89 ~wLGi~~d~~~~~qS~r~~~~y~~a~~Li~~G~AY~c-----~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m 163 (554)
T PRK05347 89 RWLGFDWSGELRYASDYFDQLYEYAVELIKKGKAYVD-----DLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERM 163 (554)
T ss_pred HHcCCCCCCCceeeecCHHHHHHHHHHHHHcCCEeeC-----CCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHH
Confidence 4588875466778899999999999999999999962 22110 01122222111 1 224
Q ss_pred hCCCC--------ccccccccCC--CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCc
Q 014658 64 RAGER--------VAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP 133 (421)
Q Consensus 64 ~~g~~--------v~~~~~K~~p--~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~p 133 (421)
..|.. ...+-.-.|+ +|+++.+....-+|.=-+.| .+.|-.|..| +...+..| ++.-+-|.|++-
T Consensus 164 ~~G~~~~g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~-~iyPtYdfA~-~vdD~l~g--ITHvlRg~E~~~- 238 (554)
T PRK05347 164 RAGEFPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKW-CIYPMYDFAH-CISDAIEG--ITHSLCTLEFED- 238 (554)
T ss_pred HCCCCCCCcEEEEEEeeccCCCCCCCCCEEEEecCCCCCccCCce-eeecCcCccc-eeeccccC--CceEEecccccc-
Confidence 45531 1112122344 69999886422122101222 3578888765 34444554 333333677332
Q ss_pred chHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCC-------c--------cCHHHHHH-hcCchHHHHHHhhc-
Q 014658 134 HHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN-------F--------FTIRQITE-RYHPLALRHFLISA- 196 (421)
Q Consensus 134 H~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN-------~--------i~~~dll~-~yg~D~lR~~ll~~- 196 (421)
|..--..+..+++....+.+ .+-||+.++|.||||+.+. + .|+..+.. .|.|+++|=|++..
T Consensus 239 ~t~~~~~i~~alg~~~~P~~-~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG 317 (554)
T PRK05347 239 HRPLYDWVLDNLPIPPHPRQ-YEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIG 317 (554)
T ss_pred ChHHHHHHHHHcCCCCCCce-EEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhC
Confidence 23333344566754433545 4668999999999999965 2 26777765 59999999999885
Q ss_pred CCCCCcccCHHHHHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDA 215 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~ 215 (421)
--..+..++++.|....+.
T Consensus 318 ~s~~~~~i~~~~L~~~nRk 336 (554)
T PRK05347 318 VTKQDSVIDMSMLESCIRE 336 (554)
T ss_pred CCCCCCeecHHHHHHHHHH
Confidence 3466789999999876543
No 85
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.24 E-value=3.5e-06 Score=88.36 Aligned_cols=198 Identities=21% Similarity=0.229 Sum_probs=117.4
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC---------CC-Cccccccc-cc---hhhhCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SP-NYGRLSGQ-RL---ENNRAG 66 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~---------~~-~Yg~ls~~-~~---~~~~~g 66 (421)
|+.|||. |+.++++|+|++.+.+++++|+++|+||.- |+... .+ .+-.++.. ++ ++|..|
T Consensus 152 L~wLGi~-~d~~~~qSd~~~~y~~~a~~Li~~G~AY~C-----~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g 225 (560)
T TIGR00463 152 LDWLGVK-GDEVVYQSDRIEEYYDYCRKLIEMGKAYVC-----DCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNG 225 (560)
T ss_pred HHHcCCC-CCccccccccHHHHHHHHHHHHHcCCceee-----cCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcc
Confidence 3568998 799999999999999999999999999962 11100 00 01112211 11 123333
Q ss_pred C--------Cccccc--cccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchH
Q 014658 67 E--------RVAVDS--RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHE 136 (421)
Q Consensus 67 ~--------~v~~~~--~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~ 136 (421)
. |+..+. .-..-+||++++....-++.--..| .+.|..|..| +.-....| ++.-+=|.|++-
T Consensus 226 ~~~~~~~~lR~K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~-~~~PtYdfA~-~VDD~l~g--ITHviRg~E~~~---- 297 (560)
T TIGR00463 226 TEEGGKVVVRAKTDYKHKNPAIRDWVIFRINKTPHPRTGDKY-KVYPTMDFSV-PIDDHLLG--VTHVLRGKDHID---- 297 (560)
T ss_pred cccCCCeEEEEECCCcCCCccccCcEEEEecCCCccccCCEE-EEEeccccce-EeecccCC--CCeEEechhhhc----
Confidence 2 111111 1112269999986432222111222 3678888766 44444555 333344788554
Q ss_pred HHHHHH---HhccCCCCCcEEEeeeeeeeC-CcccccccC-------Cc--------cCHHHHHH-hcCchHHHHHHhhc
Q 014658 137 NEIAQS---CAACQDSNVSYWMHNGHVTNN-NEKMSKSLG-------NF--------FTIRQITE-RYHPLALRHFLISA 196 (421)
Q Consensus 137 ~~~a~~---~a~~~~~~~~~~~h~g~l~~~-G~KMSKSlG-------N~--------i~~~dll~-~yg~D~lR~~ll~~ 196 (421)
+.+.|. .+++.. .+.+ .|.+++..+ |.|+|||.+ -+ .|+..+-. .|.|+++|=|++..
T Consensus 298 nT~rq~yl~~~lg~~-~P~~-~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~ 375 (560)
T TIGR00463 298 NERKQQYIYMYFGWE-LPEF-IHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSI 375 (560)
T ss_pred CCHHHHHHHHHcCCC-CCeE-EEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 333332 233333 3445 789999875 569998762 11 23444443 58999999999985
Q ss_pred -CCCCCcccCHHHHHHHHH
Q 014658 197 -HYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~~~ 214 (421)
.-..+..++++.|....+
T Consensus 376 G~s~~~~~i~~~~l~~~nr 394 (560)
T TIGR00463 376 GVKRNDVNLSWKNIYAFNK 394 (560)
T ss_pred CCCCCCceeeHHHHHHHHH
Confidence 446788999999987654
No 86
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=98.24 E-value=5e-06 Score=62.04 Aligned_cols=57 Identities=33% Similarity=0.514 Sum_probs=42.0
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 256 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 256 ~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
+|.++|+|||||+.|++. |+++++.+|+...... ...+..+...+..+..||||...
T Consensus 1 ~F~~AmdDDfNT~~Ala~-lf~l~~~~N~~~~~~~-----------~~~~~~~~~~l~~~~~vLGl~~~ 57 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAA-LFELVKEINRALESND-----------KEDLEALAAALRKLLDVLGLLQE 57 (63)
T ss_dssp HHHHHHCBTS-HHHHHHH-HHHHHHHHHHHHHCC------------HHHHHHHHHHHHHHHHCCT-S-S
T ss_pred ChHHHHhHhcCcHHHHHH-HHHHHHHHHHhcccCC-----------HHHHHHHHHHHHHHHhcCcCCCC
Confidence 478999999999999999 9999999999332221 23345567888889999999654
No 87
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.20 E-value=1.6e-05 Score=86.35 Aligned_cols=202 Identities=18% Similarity=0.050 Sum_probs=122.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEecc--------------CCCCcccccccc-c---hhh
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE--------------KSPNYGRLSGQR-L---ENN 63 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~--------------~~~~Yg~ls~~~-~---~~~ 63 (421)
+-||+..+......|+|.+.+.++.++|+++|.||.- |+.. .-..|-.+|... + +.+
T Consensus 91 ~wLG~~wd~~~~~qS~~~~~y~~~a~~Li~~G~aY~c-----~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m 165 (771)
T PRK14703 91 RWLGFDWGEHLYYASDYFERMYAYAEQLIKMGLAYVD-----SVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRM 165 (771)
T ss_pred HHcCCCCCCCceEeecCHHHHHHHHHHHHHcCCcccC-----cCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4588886555678999999999999999999999962 2110 011232233211 1 124
Q ss_pred hCCCC--------ccccccccC--CCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCc
Q 014658 64 RAGER--------VAVDSRKRN--PADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP 133 (421)
Q Consensus 64 ~~g~~--------v~~~~~K~~--p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~p 133 (421)
..|.- ...+-...| -+|+++++....-.|..-..| .+.|-.|..| ++..+..| ++.-+-|.|+.-
T Consensus 166 ~~G~~~~g~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~~~Gd~~-~i~PtYdfa~-~vdD~l~g--ITHvlRg~E~~~- 240 (771)
T PRK14703 166 RAGEFPDGAHVLRAKIDMSSPNMKLRDPLLYRIRHAHHYRTGDEW-CIYPMYDFAH-PLEDAIEG--VTHSICTLEFEN- 240 (771)
T ss_pred hCCCCcCCCeEEEEEeeccCCcccCCCCEEEEEcCCCCCCcCCCC-CcCCCccccc-eeeccccC--CcEEEecHhhhh-
Confidence 44431 111222233 369999996432233211222 2578888755 44444554 343344788432
Q ss_pred chHHHHHHHHhccCCCC-CcEEEeeeeeeeCCccccccc-------CCc--------cCHHHHHH-hcCchHHHHHHhhc
Q 014658 134 HHENEIAQSCAACQDSN-VSYWMHNGHVTNNNEKMSKSL-------GNF--------FTIRQITE-RYHPLALRHFLISA 196 (421)
Q Consensus 134 H~~~~~a~~~a~~~~~~-~~~~~h~g~l~~~G~KMSKSl-------GN~--------i~~~dll~-~yg~D~lR~~ll~~ 196 (421)
+..--..+..++++.++ +.+ .+.|++.+.|.||||++ |-+ -|+..+.. .|.|+++|=|++..
T Consensus 241 ~~~~~~~l~~~l~~~~~~P~~-~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~l 319 (771)
T PRK14703 241 NRAIYDWVLDHLGPWPPRPRQ-YEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQI 319 (771)
T ss_pred ccHHHHHHHHHhCCCCCCcce-eEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHh
Confidence 12222233456655433 556 46799999999999998 332 14666655 59999999999885
Q ss_pred -CCCCCcccCHHHHHHHHH
Q 014658 197 -HYRSPLNYSVLQLDSASD 214 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~~~ 214 (421)
--..+..++++.|....+
T Consensus 320 G~s~~~~~i~~~~L~~~~R 338 (771)
T PRK14703 320 GVAKTNSTVDIGVLEFAIR 338 (771)
T ss_pred CCCccCceecHHHHHHHHH
Confidence 446788999999987654
No 88
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.15 E-value=3.5e-05 Score=80.19 Aligned_cols=86 Identities=23% Similarity=0.297 Sum_probs=56.6
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHH---HHhccCCCCCcEEEeeeeee-eCCcccccccCCcc
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFF 175 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~---~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i 175 (421)
.|-|..|.-+ +...+..| ++.-+-|.| |+.+.+-| ..+++.++ ++ +.|..++. .+|.||||+.| .+
T Consensus 190 DG~ptY~~a~-vVdD~~~~--ithvIrG~d----~~~~t~~q~~l~~alG~~~-p~-~~H~pli~~~~g~klSKR~g-~~ 259 (476)
T PRK01406 190 DGTPTYNFAV-VVDDHLMG--ITHVIRGED----HLSNTPKQILLYEALGWEV-PV-FAHLPLILGPDGKKLSKRHG-AT 259 (476)
T ss_pred CCCccccchH-HHHHHHcC--CCEEEECch----hhcCHHHHHHHHHHhCCCC-Ce-EEEeeeeeCCCCCcccCcCC-cc
Confidence 4677788643 44555665 344457899 55555544 45565433 44 48888864 68999999999 78
Q ss_pred CHHHHHHh-cCchHHHHHHhh
Q 014658 176 TIRQITER-YHPLALRHFLIS 195 (421)
Q Consensus 176 ~~~dll~~-yg~D~lR~~ll~ 195 (421)
++.++.+. |-+.+++-|+..
T Consensus 260 ~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 260 SVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred CHHHHHHCCCCHHHHHHHHHH
Confidence 99999875 456555555543
No 89
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.13 E-value=2.7e-05 Score=81.99 Aligned_cols=201 Identities=12% Similarity=0.063 Sum_probs=118.2
Q ss_pred CCCCCCCCCc-cccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----------CCCccccccc-cc---hhhhCC
Q 014658 2 ADLQCLPPTY-QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQ-RL---ENNRAG 66 (421)
Q Consensus 2 ~~Lnv~~p~~-~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----------~~~Yg~ls~~-~~---~~~~~g 66 (421)
+-||+. ++- ....|++.+.+.+++++|+++|.||. +|+... -..|-.++.. ++ +.+..|
T Consensus 112 ~WLGl~-wDe~~~~QSdr~d~y~e~a~~Li~~G~AY~-----c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g 185 (601)
T PTZ00402 112 ATLGVS-WDVGPTYSSDYMDLMYEKAEELIKKGLAYC-----DKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKG 185 (601)
T ss_pred HHCCCC-CCCceeeccccHHHHHHHHHHHHHcCCEEE-----ecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhcccc
Confidence 458886 453 56889999999999999999999993 343311 0123222211 01 112222
Q ss_pred CC--------cccc--ccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchH
Q 014658 67 ER--------VAVD--SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHE 136 (421)
Q Consensus 67 ~~--------v~~~--~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~ 136 (421)
.. ...+ +.-.+-+||++.+....-.+.--..| .|.|-.|..| +......| ++.-+=|.|++- |..
T Consensus 186 ~~~~~~~~lR~kid~~~~n~~~rD~Vl~R~~~~~h~rtGdk~-dgyPtYdfA~-vVDD~l~g--ITHvlRg~E~l~-~tp 260 (601)
T PTZ00402 186 SAEGQETCLRAKISVDNENKAMRDPVIYRVNLTPHARQGTKY-KAYPTYDFCC-PIIDSVEG--VTHALRTNEYHD-RND 260 (601)
T ss_pred ccCCCceEEEEecccCCCCCCccCCEEEEEcCCcccccCCCC-ceeeccCcce-eeEccccC--CceEeechhhhh-CcH
Confidence 21 0011 11123369999885422112111222 6888888765 33344444 343344788443 333
Q ss_pred HHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCc---------------cCHHHHH-HhcCchHHHHHHhhc-CCC
Q 014658 137 NEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQIT-ERYHPLALRHFLISA-HYR 199 (421)
Q Consensus 137 ~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~~~dll-~~yg~D~lR~~ll~~-~~~ 199 (421)
--..+..+++..+ +.+ .|.+.++.+|.||||+.+.- .|+.-|. ..|.++++|=||... --.
T Consensus 261 ~q~~L~~aLg~~~-P~~-~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk 338 (601)
T PTZ00402 261 QYYWFCDALGIRK-PIV-EDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSK 338 (601)
T ss_pred HHHHHHHHhCCCC-ceE-EEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 3333445565443 434 78898889999999998852 1222222 369999999999885 447
Q ss_pred CCcccCHHHHHHHHHH
Q 014658 200 SPLNYSVLQLDSASDA 215 (421)
Q Consensus 200 ~d~~fs~e~l~~~~~~ 215 (421)
++..|+++.|....+.
T Consensus 339 ~~~~~d~~~L~~~nr~ 354 (601)
T PTZ00402 339 TVNFMEWSKLWYFNTQ 354 (601)
T ss_pred CCcccCHHHHHHHHHH
Confidence 8889999999876543
No 90
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=98.09 E-value=7.4e-05 Score=67.85 Aligned_cols=127 Identities=11% Similarity=0.125 Sum_probs=83.9
Q ss_pred cCHHHHHHHHH-HHHHHHHHHHHHHH--hcCCcccC------CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 014658 204 YSVLQLDSASD-AVFYIYQTLQDCEV--ALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 274 (421)
Q Consensus 204 fs~e~l~~~~~-~l~~l~~~l~~~~~--~~~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~ 274 (421)
||++.++.+.+ .+.+|||+++++.+ ......+. ......|+|++.+++.+..++.++| ++|+++.|++.
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~~~- 78 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAVRA- 78 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-
Confidence 68889998887 78899999887643 22221111 1124578999999999999999999 89999999999
Q ss_pred HHHHHHHH-HHHHhhhcc--cCchhhhhhhHHHHHHHHHHHHHHHhHhcc-CCCCChHHHHHHH
Q 014658 275 FQDALKFI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILGL-LPPGAYSEVLQQL 334 (421)
Q Consensus 275 l~~~~~~~-N~yi~~~~p--w~~~~~~~~~~~~l~~~~~~l~~~l~ilGi-~~~~~~~~~~~~~ 334 (421)
+++|+... +.|++..++ |.... ...+......+...+..++.+|.. +|- ..+++++.+
T Consensus 79 l~~f~~~~~~~Y~e~~K~~~~~~~~-~~~~~~~~~~l~~~l~~ll~ll~P~~P~-~aEElw~~l 140 (183)
T cd07961 79 LLEFIDELTNWYIRRNRKRFWGEEG-DDDKLAAYATLYEVLLTLSRLMAPFTPF-ITEEIYQNL 140 (183)
T ss_pred HHHHHHHhhhhHhhhchHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHh
Confidence 99999865 778887553 43111 111122333455666666676663 332 334444433
No 91
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.06 E-value=4.8e-05 Score=77.76 Aligned_cols=182 Identities=15% Similarity=0.208 Sum_probs=105.7
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--------------CCCc-cccccccchh-hhC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNY-GRLSGQRLEN-NRA 65 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--------------~~~Y-g~ls~~~~~~-~~~ 65 (421)
+-||+. +|-..+-|++++...+++++|+++|.||. .||+.. -+.| |.-.+...++ +..
T Consensus 59 ~WlGl~-wDe~y~QSeR~~~Y~~~a~~Li~~G~AY~-----C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~~~ 132 (433)
T PRK12410 59 NLFGIS-WDKLVYQSENLKFHRQMAEKLLSEKKAFA-----CFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVLNC 132 (433)
T ss_pred HHcCCC-CCCCeehhccHHHHHHHHHHHHHcCCeee-----ecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHHhc
Confidence 457886 46667889999999999999999999994 121110 1122 1111111111 111
Q ss_pred CCC----ccccc---------------cccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEee
Q 014658 66 GER----VAVDS---------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 126 (421)
Q Consensus 66 g~~----v~~~~---------------~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~g 126 (421)
|.+ ..++. .=..-.||+++|. .|.|-.|..| +.=.+..| ++.-+=
T Consensus 133 g~~~~iR~k~p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~PtY~fA~-vVDD~~mg--IThViR 196 (433)
T PRK12410 133 NKPFVVRLKKPNHTMSFTDAIKGEVSFEPDEIDSFVILRA-------------DKTPTYNFAC-AVDDMLYD--ISLIIR 196 (433)
T ss_pred CCCeEEEEEcCCCceeeeeccceeEEeccccCCCeEEEcC-------------CCCccccccc-hhchhhcC--CCEEEe
Confidence 111 00000 0011125555554 4667888754 33334444 343344
Q ss_pred cccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHH-hcCchHHHHHHhhcCC-CC
Q 014658 127 GIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY-RS 200 (421)
Q Consensus 127 G~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~~~-~~ 200 (421)
|.| |..+.+.|. .|++-++|+ .|.|..+++ .+|.||||+.|. +++.++.+ .|.|++++=|++.-.+ ..
T Consensus 197 G~d----~l~~tp~Qi~Ly~aLg~~~pp-~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~ 270 (433)
T PRK12410 197 GED----HVSNTPKQILIREALGYNKEI-TYAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTP 270 (433)
T ss_pred chh----hhhCcHHHHHHHHHcCCCCCC-eEEEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCc
Confidence 799 666666664 555544434 458999775 799999999986 56777765 5999999998877322 11
Q ss_pred CcccCHHHHHH
Q 014658 201 PLNYSVLQLDS 211 (421)
Q Consensus 201 d~~fs~e~l~~ 211 (421)
+--|+.+.+.+
T Consensus 271 ~e~~~~~eli~ 281 (433)
T PRK12410 271 KEIFTLEEAIE 281 (433)
T ss_pred ccccCHHHHHH
Confidence 33355555443
No 92
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.02 E-value=6.4e-05 Score=71.09 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=60.3
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeee-eeCCcccccccCCccCHH
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIR 178 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~ 178 (421)
.|.|..|..+++ -....| ++.-+=|.|++- |..--.+...+++.++ +.+ .|...+ ..+|.|||||.|+ .++.
T Consensus 101 dg~ptY~~a~~v-DD~~~~--ithViRG~D~~~-~t~~q~~l~~aLg~~~-p~~-~h~pll~~~~g~KLSKR~~~-~~l~ 173 (239)
T cd00808 101 DGFPTYHLANVV-DDHLMG--ITHVIRGEEHLS-STPKQILLYEALGWEP-PKF-AHLPLILNPDGKKLSKRKGD-TSIS 173 (239)
T ss_pred CCCcccccHHHH-hHHhcC--CCEEEEChhhhh-ChHHHHHHHHHcCCCC-Cce-EeeccccCCCCCcccCCCCC-ccHH
Confidence 588889986543 223344 455566899332 2333344445665443 444 677876 5799999999999 6777
Q ss_pred HHHH-hcCchHHHHHHhhc
Q 014658 179 QITE-RYHPLALRHFLISA 196 (421)
Q Consensus 179 dll~-~yg~D~lR~~ll~~ 196 (421)
.+.+ .+.+.+++.|++.-
T Consensus 174 ~lr~~G~~p~ai~~~l~~l 192 (239)
T cd00808 174 DYREEGYLPEALLNYLALL 192 (239)
T ss_pred HHHHCCCCHHHHHHHHHHc
Confidence 7765 58999999999874
No 93
>PLN02907 glutamate-tRNA ligase
Probab=97.99 E-value=7.3e-05 Score=81.30 Aligned_cols=201 Identities=16% Similarity=0.134 Sum_probs=123.5
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--CCCc-cccccccch-------hhhCCC----
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--SPNY-GRLSGQRLE-------NNRAGE---- 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--~~~Y-g~ls~~~~~-------~~~~g~---- 67 (421)
+-||+. ++...+.|++++.+.+++++|+++|.||.-.-+. =.+.. ...| |.-.++..+ +|..|.
T Consensus 273 ~wLG~~-~d~~~~qS~r~~~y~~~a~~Li~~G~aY~~~~~~-~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~ 350 (722)
T PLN02907 273 ETLGIK-YDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPR-EQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGL 350 (722)
T ss_pred HHcCCC-CCCcccccccHHHHHHHHHHHHHcCCeeecCCCH-HHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCC
Confidence 458887 5788899999999999999999999999632100 00000 0112 111111222 233333
Q ss_pred ----CccccccccCC--CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHH
Q 014658 68 ----RVAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 141 (421)
Q Consensus 68 ----~v~~~~~K~~p--~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~ 141 (421)
|...+-.-.|+ +||++-+....-++.+-..| .+.|-.|..| +...+..| ++.-+=|.| |..+.+-|
T Consensus 351 ~~~lR~k~d~~~~n~~~~D~v~~R~~~~~h~~~gd~~-~~~PtY~fa~-~vdD~~~g--IThvlRg~e----~~~~t~~q 422 (722)
T PLN02907 351 QCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKY-KVYPTYDFAC-PFVDALEG--VTHALRSSE----YHDRNAQY 422 (722)
T ss_pred CeEEEEEcccCCCCCCcccCEEEEecCCcccccCCcc-ceeeccCCce-EEEcccCC--CceEeecHh----hhhChHHH
Confidence 12222112222 69999887543345555666 7889999866 34344444 333344688 44443333
Q ss_pred ---HHhccCCCCCcEEEeeeeeeeCCccccccc-------CCc--------cCHHHHHH-hcCchHHHHHHhhc-CCCCC
Q 014658 142 ---SCAACQDSNVSYWMHNGHVTNNNEKMSKSL-------GNF--------FTIRQITE-RYHPLALRHFLISA-HYRSP 201 (421)
Q Consensus 142 ---~~a~~~~~~~~~~~h~g~l~~~G~KMSKSl-------GN~--------i~~~dll~-~yg~D~lR~~ll~~-~~~~d 201 (421)
..+++.++ +.+ .|.|++.++|.||||++ |-+ -|+..+.. .|.++++|=|++.. .-.++
T Consensus 423 ~~l~~~lg~~~-p~~-~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~ 500 (722)
T PLN02907 423 YRILEDMGLRK-VHI-WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNL 500 (722)
T ss_pred HHHHHHcCCCC-Cee-EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCC
Confidence 35555443 345 56689999999999998 322 24556544 49999999999885 45778
Q ss_pred cccCHHHHHHHHH
Q 014658 202 LNYSVLQLDSASD 214 (421)
Q Consensus 202 ~~fs~e~l~~~~~ 214 (421)
..|+++.|....+
T Consensus 501 ~~~~~~~l~~~nr 513 (722)
T PLN02907 501 NLMEWDKLWTINK 513 (722)
T ss_pred ccccHHHHHHHHH
Confidence 8999999987654
No 94
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.97 E-value=5.3e-05 Score=71.31 Aligned_cols=148 Identities=16% Similarity=0.163 Sum_probs=98.2
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCcc
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 81 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF 81 (421)
+.||+. +|-..+-|++++...+++++|+++|.||.. .+ .| .+|
T Consensus 61 ~wlGl~-wD~~~~QS~r~~~Y~~~~~~L~~~g~aY~~------------------~~------~~------------~~~ 103 (238)
T cd00807 61 KWLGIK-PYKVTYASDYFDQLYEYAEQLIKKGKAYVH------------------HR------TG------------DKW 103 (238)
T ss_pred HHcCCC-CCCceecccCHHHHHHHHHHHHHcCCeecC------------------CC------CC------------CCE
Confidence 457886 566667899999999999999999999980 00 00 133
Q ss_pred cccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeee
Q 014658 82 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNG 158 (421)
Q Consensus 82 ~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g 158 (421)
.+ +|..|..| +.-....| ++.-+=|.|+ ..+.+.|. .+++.++ +.+ +|.+
T Consensus 104 ~i------------------~ptY~lA~-vVDD~~~g--IThVvRG~D~----l~~t~~Q~~l~~aLg~~~-P~~-~~~~ 156 (238)
T cd00807 104 CI------------------YPTYDFAH-PIVDSIEG--ITHSLCTLEF----EDRRPSYYWLCDALRLYR-PHQ-WEFS 156 (238)
T ss_pred EE------------------Eeccccce-EeeccccC--CCeEEechhh----hcCCHHHHHHHHHcCCCC-Cce-eEEE
Confidence 33 37778754 33333444 4444457994 44444443 5555444 444 3558
Q ss_pred eeeeCCcccccccCC------cc---------CHHHHHH-hcCchHHHHHHhhc-CCCCCcccCHHHHHHHH
Q 014658 159 HVTNNNEKMSKSLGN------FF---------TIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSAS 213 (421)
Q Consensus 159 ~l~~~G~KMSKSlGN------~i---------~~~dll~-~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~ 213 (421)
|+..+|.||||+.+- .+ ++..+.. .|.|++++=|++.- --.++..|+++.|....
T Consensus 157 hln~~g~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~n 228 (238)
T cd00807 157 RLNLTYTVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACV 228 (238)
T ss_pred EECCCCCCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Confidence 889999999999852 12 2344433 58999999999874 44788999999887543
No 95
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.94 E-value=7.9e-05 Score=69.96 Aligned_cols=87 Identities=24% Similarity=0.264 Sum_probs=59.5
Q ss_pred CCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeeee-CCcccccccCCccC
Q 014658 101 GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFT 176 (421)
Q Consensus 101 grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~ 176 (421)
|.|..|..| +.-....| ++.-+=|.| |..+.+.|. .+++. +.+.+ .|...++. +|.|||||.|+ ++
T Consensus 93 g~p~Y~la~-vvDD~~~g--IThViRG~D----~l~st~~q~~l~~~Lg~-~~P~~-~H~pll~~~~g~KLSKr~~~-~~ 162 (230)
T cd00418 93 GYPLYNFVH-PVDDALMG--ITHVLRGED----HLDNTPIQDWLYEALGW-EPPRF-YHFPRLLLEDGTKLSKRKLN-TT 162 (230)
T ss_pred CCccccccc-cccccccC--CCEEEECHh----hhhchHHHHHHHHHcCC-CCCeE-EEeeeeeCCCCCCccCcCCC-cC
Confidence 778888754 33344444 454455799 444444443 45544 33445 89898874 77999999998 67
Q ss_pred HHHHHH-hcCchHHHHHHhhcC
Q 014658 177 IRQITE-RYHPLALRHFLISAH 197 (421)
Q Consensus 177 ~~dll~-~yg~D~lR~~ll~~~ 197 (421)
+.++.+ .|.+++++-|+..-.
T Consensus 163 i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 163 LRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred HHHHHHCCCcHHHHHHHHHHcC
Confidence 877765 499999999987643
No 96
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=97.92 E-value=2.7e-05 Score=56.41 Aligned_cols=54 Identities=28% Similarity=0.350 Sum_probs=41.4
Q ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 257 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 257 v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
|.++|+||||++.|+.. ++++++.+|.+++... . ...+..+...+..++.+||+
T Consensus 2 f~~al~DD~NT~~Al~~-l~~l~~~~N~~l~~~~--~--------~~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 2 FEEAMDDDFNTPEALAV-LFELAREINRLLLKAV--D--------AEELAALAALLRALGGVLGL 55 (56)
T ss_pred hHHHhhcccCcHHHHHH-HHHHHHHHHHHhhccc--C--------HHHHHHHHHHHHHHHhccCC
Confidence 67899999999999999 9999999999885321 0 11234455667778888886
No 97
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.88 E-value=0.00025 Score=73.84 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=67.8
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCcc
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFF 175 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i 175 (421)
.|-|..|..+. .-....| ++--+-|.| |+.+.+-|. .|++. +.+ .+.|..+|+ .+|.||||+.|..
T Consensus 179 DG~ptY~~a~v-VDD~~m~--ithVIRG~d----~~~~t~~q~~l~~aLG~-~~p-~~~H~plv~~~~g~KLSKR~g~~- 248 (513)
T PRK14895 179 DGTATYMLAVV-VDDHDMG--ITHIIRGDD----HLTNAARQLAIYQAFGY-AVP-SMTHIPLIHGADGAKLSKRHGAL- 248 (513)
T ss_pred CCCcchhhHHH-HHHHhcC--CCEEEECch----HhhhHHHHHHHHHHcCC-CCC-eEEEEEeEEcCCCCccccccCch-
Confidence 46688887543 2233344 454447899 666666655 44543 334 458999998 8999999999984
Q ss_pred CHHHHHH-hcCchHHHHHHhh-c-CCCCCcccCHHHHHH
Q 014658 176 TIRQITE-RYHPLALRHFLIS-A-HYRSPLNYSVLQLDS 211 (421)
Q Consensus 176 ~~~dll~-~yg~D~lR~~ll~-~-~~~~d~~fs~e~l~~ 211 (421)
.+.++.+ .|-|++++=|++. + ++...--||.+.+.+
T Consensus 249 ~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 249 GIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred hHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 6667665 5999999988875 3 344334577776654
No 98
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.84 E-value=8.1e-05 Score=76.42 Aligned_cols=183 Identities=19% Similarity=0.226 Sum_probs=110.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--------------CCCccc----cccccch-
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGR----LSGQRLE- 61 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--------------~~~Yg~----ls~~~~~- 61 (421)
|+.|||. +|...+-|+.++.+.+++++|+++|+||.- ||+.. .+.|.. |+.....
T Consensus 61 L~wLGI~-~De~y~QSer~~~y~~~~e~L~e~G~AY~C-----~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~ 134 (445)
T PRK12558 61 LKWLGIN-WDRTFRQSDRFDRYDEAAEKLKAAGRLYPC-----YETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAA 134 (445)
T ss_pred HHHcCCC-CCccccHHHHHHHHHHHHHHHHHCCCEEEe-----cCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHh
Confidence 4578997 688889999999999999999999999941 21111 112221 1111000
Q ss_pred hhhCCCCc----cccc---------------cccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCce
Q 014658 62 NNRAGERV----AVDS---------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122 (421)
Q Consensus 62 ~~~~g~~v----~~~~---------------~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~D 122 (421)
....|.+. .+.. .-..-.||++.|. .|.|..|..|+ .-.+..| ++
T Consensus 135 ~~~~g~~~~iR~k~~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~-------------dg~PtY~fA~v-VDD~~m~--IT 198 (445)
T PRK12558 135 LEAEGRKPHWRFKLDDEPISWDDLIRGEQSIDAASLSDPVLIRA-------------DGSYLYTLPSV-VDDIDMG--IT 198 (445)
T ss_pred HHhcCCCceEEEecCCCceEEEEEeeeEeecccccCCCeEEEec-------------CCCccccccce-eccccCC--CC
Confidence 01112110 0000 0001235555553 36688998653 2233333 44
Q ss_pred EEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHH-hcCchHHHHHHhh-c
Q 014658 123 IHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLIS-A 196 (421)
Q Consensus 123 ih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~-~ 196 (421)
.-+=|.| |..+.+-|. .|++-++ + .|.|..+++ .+|.|+||+.|. +++.++.+ .|-|++++=|++. +
T Consensus 199 HViRG~d----~l~~t~~q~~l~~alg~~~-P-~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG 271 (445)
T PRK12558 199 HIIRGED----HVTNTAVQIQIFEALGAKP-P-VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLG 271 (445)
T ss_pred EEEechh----hhhCCHHHHHHHHHhCCCC-C-eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHc
Confidence 3444799 666666654 4554444 3 458999988 489999999986 67877776 5999999988876 3
Q ss_pred -CCCCCcccCHHHHHHH
Q 014658 197 -HYRSPLNYSVLQLDSA 212 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~ 212 (421)
++..+--||.+.+.+.
T Consensus 272 ~s~~~~e~~~~~eli~~ 288 (445)
T PRK12558 272 TSDPVEPYTSMEELAES 288 (445)
T ss_pred CCCCCcccCCHHHHHHh
Confidence 4444444687776553
No 99
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.71 E-value=0.0004 Score=72.51 Aligned_cols=199 Identities=17% Similarity=0.122 Sum_probs=110.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----------CC----Ccccccccc-c---hhh
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SP----NYGRLSGQR-L---ENN 63 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----------~~----~Yg~ls~~~-~---~~~ 63 (421)
+-||+.+-+.....|+|.+.+-+++++|+++|.||.- |+... .+ .|-.+|... + ++|
T Consensus 60 ~wLG~~~d~~~~~qS~~~~~~~~~a~~Li~~G~AY~c-----~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m 134 (522)
T TIGR00440 60 EWLGFKWEGKIRYSSDYFDELYRYAEELIKKGLAYVD-----ELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKM 134 (522)
T ss_pred HHcCCCCCCCceEccccHHHHHHHHHHHHHcCCEEee-----cCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHH
Confidence 4588875456678999999999999999999999963 22110 01 122222111 1 234
Q ss_pred hCCCC--------ccccccccCC--CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCc
Q 014658 64 RAGER--------VAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP 133 (421)
Q Consensus 64 ~~g~~--------v~~~~~K~~p--~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~p 133 (421)
..|.. ...+..-.|+ +|+++.+-.....+-=-..| .+.|-.|..| +...+..| ++.-+-|.|
T Consensus 135 ~~G~~~~g~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~~~gdk~-~iyPtYdfa~-~vdD~l~g--ITHviRg~E---- 206 (522)
T TIGR00440 135 RDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIKFAPHHQTGTKW-CIYPMYDFTH-CISDAMEN--ITHSLCTLE---- 206 (522)
T ss_pred hcCcccCCCeEEEEeCcCCCCCceEeeeeEEEEecCCCCCCCCCe-eEEeCcCCce-eehhccCC--CceEeecHh----
Confidence 44431 1111111122 46666554322111000112 2377777654 44444554 333334677
Q ss_pred chHHHH---HHHHhccCCCCCcEEEeeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchHHHHHHh
Q 014658 134 HHENEI---AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFLI 194 (421)
Q Consensus 134 H~~~~~---a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~~~dll~-~yg~D~lR~~ll 194 (421)
|..+-+ ++...+.....+++ .+.+++.++|.||||+.+.. .|+..+.+ .|.|+++|=|++
T Consensus 207 ~~~nt~~Y~~~~~~l~~~~~P~~-~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~ 285 (522)
T TIGR00440 207 FQDNRRLYDWVLDNIHIFPRPAQ-YEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCN 285 (522)
T ss_pred hhhcHHHHHHHHHhcCccCCCce-EEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHH
Confidence 433331 22222222212445 36688999999999999875 47788776 599999999998
Q ss_pred hcCCC-CCcccCHHHHHHHHH
Q 014658 195 SAHYR-SPLNYSVLQLDSASD 214 (421)
Q Consensus 195 ~~~~~-~d~~fs~e~l~~~~~ 214 (421)
...+. .+...++..+.+..+
T Consensus 286 ~lG~s~~~~~~e~~~l~~~~r 306 (522)
T TIGR00440 286 RIGVTKQDNNIEVVRLESCIR 306 (522)
T ss_pred HhCCCCCCCceehhhHHHHHH
Confidence 85443 334456666766543
No 100
>PLN02627 glutamyl-tRNA synthetase
Probab=97.64 E-value=0.00041 Score=72.47 Aligned_cols=101 Identities=18% Similarity=0.226 Sum_probs=66.6
Q ss_pred CCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccC
Q 014658 101 GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFT 176 (421)
Q Consensus 101 grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~ 176 (421)
|.|..|..|+ .-.+..| ++.-+=|.| |..+.+-|. .|++-++| .|.|..+++ .+|.||||+.|. ++
T Consensus 233 G~PtY~fA~v-VDD~~mg--ITHViRG~D----~l~nTpkQi~ly~aLg~~~P--~f~Hlpli~~~~g~KLSKR~~~-~~ 302 (535)
T PLN02627 233 GQPVYNFCVA-VDDATMG--ITHVIRAEE----HLPNTLRQALIYKALGFPMP--RFAHVSLILAPDRSKLSKRHGA-TS 302 (535)
T ss_pred CCccccccce-ecccccC--CcEEEechh----hhcChHHHHHHHHHcCCCCC--eEEEccceeCCCCCccccccCC-cc
Confidence 5778887653 3233444 443344799 666666665 45544444 458999987 588999999876 57
Q ss_pred HHHHHH-hcCchHHHHHHhhcCC--C-CCcccCHHHHHH
Q 014658 177 IRQITE-RYHPLALRHFLISAHY--R-SPLNYSVLQLDS 211 (421)
Q Consensus 177 ~~dll~-~yg~D~lR~~ll~~~~--~-~d~~fs~e~l~~ 211 (421)
+.++.+ .|-|++++=|++.-.+ . .+--|+.+.+.+
T Consensus 303 v~~~r~~G~~PeAi~nyla~LGws~~~~~e~~~~~eli~ 341 (535)
T PLN02627 303 VGQFREMGYLPDAMVNYLALLGWNDGTENEIFTLEELVE 341 (535)
T ss_pred HHHHHHCCCCHHHHHHHHHHhCCCCCCCCCcCCHHHHHH
Confidence 777776 5999999988876433 2 233477666554
No 101
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.59 E-value=0.00029 Score=73.77 Aligned_cols=193 Identities=19% Similarity=0.200 Sum_probs=115.3
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----------CCCccccccc-cc---hhhhCCC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQ-RL---ENNRAGE 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----------~~~Yg~ls~~-~~---~~~~~g~ 67 (421)
+-||+. ++..+..|+|++.+-+++.+|+++|.||.- |+... ...|-.++.. +| ++|..|.
T Consensus 111 ~wLGi~-~D~~~~qS~y~~~~ye~A~~Li~~G~AY~C-----~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g~ 184 (574)
T PTZ00437 111 KWMGWK-PDWVTFSSDYFDQLHEFAVQLIKDGKAYVD-----HSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQGR 184 (574)
T ss_pred HHcCCC-CCCCCcCchhHHHHHHHHHHHHHcCCEEEc-----CCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhcc
Confidence 458887 577889999999999999999999999962 22111 0112222211 11 2334442
Q ss_pred C--------ccccccccCC--CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcC-----
Q 014658 68 R--------VAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF----- 132 (421)
Q Consensus 68 ~--------v~~~~~K~~p--~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~----- 132 (421)
. +..+-.-.|| +|+++..-....+|.=-.+| .+.|-.|..| ++|=|..|+-++.
T Consensus 185 ~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~-~iyPtYdFa~----------~vdD~l~gITHvlct~Ef 253 (574)
T PTZ00437 185 YAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW-CIYPSYDFTH----------CLIDSLEDIDYSLCTLEF 253 (574)
T ss_pred cccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce-EEEccCcccc----------eeechhcCCCEEeeechh
Confidence 1 1112222233 47776653222222211444 6778888766 2333444554332
Q ss_pred -cc--hHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchHHHHHH
Q 014658 133 -PH--HENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFL 193 (421)
Q Consensus 133 -pH--~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~~~dll~-~yg~D~lR~~l 193 (421)
.+ -.+|+. ..+.... +.. .+.+-++++|.|||||+... .|+..+.. .|.|+++|=|+
T Consensus 254 ~~r~~~y~wl~--~~l~l~~-p~~-~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~ 329 (574)
T PTZ00437 254 ETRRESYFWLL--EELNLWR-PHV-WEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFC 329 (574)
T ss_pred hcccHHHHHHH--HHhCCcc-cce-EeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHH
Confidence 11 122443 4443322 224 46688999999999999884 46666665 49999999999
Q ss_pred hhcC-CCCCcccCHHHHHHHHHH
Q 014658 194 ISAH-YRSPLNYSVLQLDSASDA 215 (421)
Q Consensus 194 l~~~-~~~d~~fs~e~l~~~~~~ 215 (421)
+... -.++..++++.|....+.
T Consensus 330 ~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 330 ELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred HHhCCCccceEeeHHHHHHHHHH
Confidence 9854 467889999999876543
No 102
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.56 E-value=0.00041 Score=67.73 Aligned_cols=163 Identities=16% Similarity=0.106 Sum_probs=92.3
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC------------CCCc-cccccccchhhhC-CC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNY-GRLSGQRLENNRA-GE 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~------------~~~Y-g~ls~~~~~~~~~-g~ 67 (421)
+.||+..-.-..+-|++++...+++++|+++|.||.- |++.. .+.| |.-.+...++... --
T Consensus 65 ~wlGl~wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C-----~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~i 139 (299)
T PRK05710 65 EWLGLHWDGPVLYQSQRHDAYRAALDRLRAQGLVYPC-----FCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAW 139 (299)
T ss_pred HHCCCCCCCCceEeeccHHHHHHHHHHHHHCCCceec-----CCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceE
Confidence 4578874323556799999999999999999999951 11100 0111 1100010100000 00
Q ss_pred Ccccc---------------cc-ccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCc
Q 014658 68 RVAVD---------------SR-KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 131 (421)
Q Consensus 68 ~v~~~---------------~~-K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli 131 (421)
|..++ .. ...-.||+|++. .|.|..|+.| +.-....| ++--+=|.|
T Consensus 140 Rlk~~~~~~~~~D~~~G~~~~~~~~~~~D~Vi~R~-------------dg~ptY~lA~-vVDD~~~g--IThVvRG~D-- 201 (299)
T PRK05710 140 RLRVPDAVIAFDDRLQGRQHQDLALAVGDFVLRRA-------------DGLFAYQLAV-VVDDALQG--VTHVVRGAD-- 201 (299)
T ss_pred EEEcCCCceEEEEecceeEeeCCCCCCCCEEEEec-------------CCCccccchh-HHhcccCC--CCEEEeChh--
Confidence 10000 01 113368888876 3668888755 33344555 443444799
Q ss_pred CcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhh
Q 014658 132 FPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 132 ~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
|..+.+.|. .+++.++ + .+.|+..++ .+|+||||+.|.. .+.+ ..|.+. +..|+..
T Consensus 202 --~l~~t~~Q~~l~~aLg~~~-P-~y~H~pll~~~~g~kLSKr~~~~-~i~~--~g~~p~-l~~~l~~ 261 (299)
T PRK05710 202 --LLDSTPRQIYLQQLLGLPT-P-RYLHLPLVLNADGQKLSKQNGAP-ALDA--AGPLPV-LAAALRF 261 (299)
T ss_pred --hhhcCHHHHHHHHHcCCCC-C-eEEEeecccCCCCCcccccCCcc-chhh--cCcCHH-HHHHHHH
Confidence 555555554 4554443 4 448999885 7999999998764 4444 678887 6666554
No 103
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=97.53 E-value=0.00029 Score=61.64 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH-HHHH-HHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHh
Q 014658 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA-LKFI-NSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRIL 319 (421)
Q Consensus 243 d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~-~~~~-N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~il 319 (421)
|+|++++++.+.+++.++| ++|+++.|+.. +++| .+.+ |.|++..+||.-.. ....+. ....+..++..++.+|
T Consensus 1 D~~il~~~~~~~~~~~~~~-e~~~f~~a~~~-i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAY-ENYEFNKALKE-IMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHH-HHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCHHHHHHH-HHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhcc
Confidence 4789999999999999999 89999999999 9997 4555 99999999984211 111123 4566667777777777
Q ss_pred c-cCCCCChHHHHHHH
Q 014658 320 G-LLPPGAYSEVLQQL 334 (421)
Q Consensus 320 G-i~~~~~~~~~~~~~ 334 (421)
. |+|- .++++++.+
T Consensus 78 ~P~~P~-~aEeiw~~l 92 (153)
T PF08264_consen 78 SPFMPF-IAEEIWQRL 92 (153)
T ss_dssp TTTSHH-HHHHHHHHC
T ss_pred CCCCcH-HHHHHHHHh
Confidence 7 4454 455666433
No 104
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.0006 Score=70.56 Aligned_cols=189 Identities=21% Similarity=0.234 Sum_probs=102.9
Q ss_pred CCCCCCCCCc-cccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----C----------C-Cccccccccch---h
Q 014658 2 ADLQCLPPTY-QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----S----------P-NYGRLSGQRLE---N 62 (421)
Q Consensus 2 ~~Lnv~~p~~-~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----~----------~-~Yg~ls~~~~~---~ 62 (421)
+-||+. ++- .-+.|++.+...+++++|+++|.||. .|++.. + + .|-.- ..++. .
T Consensus 69 ~WLGl~-wde~~~~QS~r~~~Y~~~~~~Li~~G~AY~-----c~ct~eele~~R~~~~~~g~~p~~y~r~-~~~L~~~~~ 141 (472)
T COG0008 69 EWLGLD-WDEGPYYQSERFDIYYEYAEKLIEKGKAYV-----CYCTPEELEEMRELRGALGEPPPSYDRD-ERNLTLFEK 141 (472)
T ss_pred HhcCCC-CCCceeehhhhHHHHHHHHHHHHHCCCeEE-----ecCCHHHHHHHHHHHhhcCCCCCCCCch-hhccchHHH
Confidence 458887 455 68889999999999999999999994 343331 0 1 22210 11121 1
Q ss_pred hhC-CC------CccccccccCCCcccccccccCCCCcccC-CCC------CCCCCCchhhHHHHHhhcCCCceEEeecc
Q 014658 63 NRA-GE------RVAVDSRKRNPADFALWKAAKAGEPSWDS-PWG------PGRPGWHIECSAMSAHYLSSKFDIHGGGI 128 (421)
Q Consensus 63 ~~~-g~------~v~~~~~K~~p~DF~LWk~~~~~~~~w~s-pwg------~grPgWhiecsam~~~~lg~~~Dih~gG~ 128 (421)
+.. |. |+..+-.-.++ -|-=|.. |++.+.+ -++ .|.|-.|..| +.-.+..| ++--+=|.
T Consensus 142 ~~~~~~~~~~viR~k~~~~~~~~-~~~D~v~---g~i~~~~~~~~dv~~r~dg~ptY~fav-vvDD~~mg--ITHviRG~ 214 (472)
T COG0008 142 MADLGEGGPAVVRLKIPMAHPGP-VFRDLVR---GRIVFAPKHPDFVILRYDGYPTYNFAV-VVDDHLMG--ITHVLRGE 214 (472)
T ss_pred HhhcccCCCeEEEEeCCCCCCCC-cccccee---eeEecCccCCcceeecCCCCcccceee-eechhhcC--CceEEech
Confidence 111 11 11111001111 1111211 2222221 222 4566677643 44445555 34334489
Q ss_pred cCcCcchHHHHHHH---HhccCCCCCcEEEeeeeeee-CCcccccccCCccCHHHH-HHhcCchHHHHHHhh-c-CC--C
Q 014658 129 DLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQI-TERYHPLALRHFLIS-A-HY--R 199 (421)
Q Consensus 129 Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dl-l~~yg~D~lR~~ll~-~-~~--~ 199 (421)
| |..|.+-|. .+++-++ +.+ .|.+.++. +|+|||||.| .++..++ ...|.+.+++-|+.. . .+ .
T Consensus 215 d----~~~nt~~q~~l~~~lg~~~-P~~-~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~ 287 (472)
T COG0008 215 D----HLDNTPRQIWLYEALGWPP-PVY-AHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPE 287 (472)
T ss_pred h----hccCCHHHHHHHHHcCCCC-CcE-EEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcCCCChh
Confidence 9 555665554 4454444 445 79999986 5679999999 6766653 356888888877754 2 33 3
Q ss_pred CCcccCHHHHHH
Q 014658 200 SPLNYSVLQLDS 211 (421)
Q Consensus 200 ~d~~fs~e~l~~ 211 (421)
..-.|+.+.+..
T Consensus 288 ~~e~f~~~~~~~ 299 (472)
T COG0008 288 AIEIFSLEEGIK 299 (472)
T ss_pred hHHHHHHHHHHh
Confidence 344555555443
No 105
>PLN02859 glutamine-tRNA ligase
Probab=97.39 E-value=0.001 Score=72.16 Aligned_cols=198 Identities=15% Similarity=0.103 Sum_probs=110.4
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----C------CCcccccc---ccc-hhhhCCC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----S------PNYGRLSG---QRL-ENNRAGE 67 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----~------~~Yg~ls~---~~~-~~~~~g~ 67 (421)
+-||+. |+...+.|+|.+.+-++..+|+++|+||.- |++.. . ..|-..+. ..+ ++|..|.
T Consensus 324 ~WLG~~-~d~~~~qSd~f~~~Y~~A~~Li~~G~AY~C-----~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~ 397 (788)
T PLN02859 324 EWMGWE-PFKITYTSDYFQELYELAVELIRRGHAYVD-----HQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGL 397 (788)
T ss_pred HHcCCC-CCCcccccHhHHHHHHHHHHHHHcCCeEec-----cCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhch
Confidence 357876 577789999999999999999999999962 22110 0 00111111 111 2333332
Q ss_pred C--------cccc--ccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHH
Q 014658 68 R--------VAVD--SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 137 (421)
Q Consensus 68 ~--------v~~~--~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~ 137 (421)
- ...+ +.--+=+|+++.+-.....+.=-+.| ...|-.|..| +...+..| ++.-+-|.|.+- |..-
T Consensus 398 ~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~-~iyPtYdFA~-~vdD~leg--ITHvLRg~E~~~-~~~~ 472 (788)
T PLN02859 398 IEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKW-CIYPSYDYAH-CIVDSLEN--ITHSLCTLEFET-RRAS 472 (788)
T ss_pred hccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCe-EEEecccccc-cccccccC--CceEeechhhhc-CCHH
Confidence 1 1111 11111145555543211111000222 2367777654 44444444 333334677332 2222
Q ss_pred HHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchHHHHHHhhcCC-CC
Q 014658 138 EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFLISAHY-RS 200 (421)
Q Consensus 138 ~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~---------------i~~~dll~-~yg~D~lR~~ll~~~~-~~ 200 (421)
-..+..|++..+ +.+ .|.+.+.++|.||||+++.. .|+..+.. .|.|+++|=|++...+ ..
T Consensus 473 y~wl~~aLg~~~-P~~-~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s~~ 550 (788)
T PLN02859 473 YYWLLDSLGLYQ-PYV-WEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGITRS 550 (788)
T ss_pred HHHHHHHcCCCC-CcE-EeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCC
Confidence 223445665544 334 68898889999999999874 46666665 5999999999988543 33
Q ss_pred Cc-ccCHHHHHHH
Q 014658 201 PL-NYSVLQLDSA 212 (421)
Q Consensus 201 d~-~fs~e~l~~~ 212 (421)
+. .|+++.|...
T Consensus 551 ~~e~i~~~~Le~~ 563 (788)
T PLN02859 551 DNSLIRMDRLEHH 563 (788)
T ss_pred CCceecHHHHHhh
Confidence 44 6999998443
No 106
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=97.25 E-value=0.0014 Score=54.97 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-hh-hhhHHHHHHHHHHHHHHHhHhc
Q 014658 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQ-LSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 243 d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~-~~-~~~~~~l~~~~~~l~~~l~ilG 320 (421)
+..++..+..+...+..++ .+++++.++.. +.+++..+|+|++....+.+.. .. ..++..+.++..++..++++||
T Consensus 35 e~~L~~~l~~~~~~l~~a~-~~~~p~~l~~y-L~~La~~f~~fy~~~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llg 112 (119)
T PF05746_consen 35 ERELLKQLARFPDVLEKAA-KDLEPHKLCDY-LYELAQAFNSFYDNVRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLG 112 (119)
T ss_dssp HHHHHHHHCTHHHHHHHHH-HHT-CHHHHHH-HHHHHHHHHHHHHHS-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH-HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4567777888888898999 89999999999 9999999999999887765322 22 5578889999999999999999
Q ss_pred cCCC
Q 014658 321 LLPP 324 (421)
Q Consensus 321 i~~~ 324 (421)
|.+.
T Consensus 113 i~~~ 116 (119)
T PF05746_consen 113 IEPL 116 (119)
T ss_dssp ----
T ss_pred CCcc
Confidence 9764
No 107
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.21 E-value=0.0013 Score=63.40 Aligned_cols=142 Identities=15% Similarity=0.132 Sum_probs=80.9
Q ss_pred CCCCCCCCCccc-cccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC---------CCCcccc-cc-------c-----
Q 014658 2 ADLQCLPPTYQP-RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SPNYGRL-SG-------Q----- 58 (421)
Q Consensus 2 ~~Lnv~~p~~~~-r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~---------~~~Yg~l-s~-------~----- 58 (421)
+-||+. ++--| +.|++++.-.+++++|+++|.||.- |++.. -+.|..- .+ .
T Consensus 60 ~wLGl~-wDe~~~~QS~r~~~Y~~~~~~L~~~G~aY~C-----~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~R 133 (272)
T TIGR03838 60 EAYGLH-WDGEVVYQSQRHALYQAALDRLLAAGLAYPC-----QCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWR 133 (272)
T ss_pred HHcCCC-CCCCeeeeeCCHHHHHHHHHHHHHcCCEEec-----CCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEE
Confidence 457886 45444 8899999999999999999999941 11110 0112100 00 0
Q ss_pred --------cchhhhCCCCccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccC
Q 014658 59 --------RLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 130 (421)
Q Consensus 59 --------~~~~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dl 130 (421)
...+...|. +..+. -..-.||+++|. .|.|..|..| +.-....| ++.-+=|.|
T Consensus 134 lk~~~~~~~~~D~~~g~-~~~~~-~~~~~D~vi~R~-------------Dg~ptY~fA~-vVDD~~~g--IThViRG~D- 194 (272)
T TIGR03838 134 LRVPDGVIAFDDRLQGP-QQQDL-AAAVGDFVLRRA-------------DGLFAYQLAV-VVDDAAQG--ITHVVRGAD- 194 (272)
T ss_pred EecCCCCceEEEeeeeE-EEecC-cccCCCEEEEec-------------CCCccccChh-hhhcccCC--CCEEEeCHh-
Confidence 000000010 00000 111246666664 3678888755 44445555 444445799
Q ss_pred cCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCC
Q 014658 131 IFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN 173 (421)
Q Consensus 131 i~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN 173 (421)
|..+.+.|. .+++-++| .|.|++.++ .+|.|+||+.|-
T Consensus 195 ---~l~~t~~q~~l~~aLg~~~P--~y~H~pll~~~~g~kLSKR~~~ 236 (272)
T TIGR03838 195 ---LLDSTPRQIYLQRLLGLPPP--RYLHLPLVVNADGEKLSKQNGA 236 (272)
T ss_pred ---hhhccHHHHHHHHHhCCCCC--eEEechhhhCCCCCeeeccCCc
Confidence 556665554 55554444 458999874 799999999876
No 108
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.075 Score=53.58 Aligned_cols=179 Identities=10% Similarity=0.066 Sum_probs=113.1
Q ss_pred HHHHHhccCCCCCcEEEeeeeeee---CCcccccccCCccCHHHHHH-------------------------------hc
Q 014658 139 IAQSCAACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFTIRQITE-------------------------------RY 184 (421)
Q Consensus 139 ~a~~~a~~~~~~~~~~~h~g~l~~---~G~KMSKSlGN~i~~~dll~-------------------------------~y 184 (421)
-|+-.+...+..+++ -|.||=.+ +|.|+-...|.+|-+.|+++ .|
T Consensus 418 Aar~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavay 496 (656)
T KOG4426|consen 418 AARKAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAY 496 (656)
T ss_pred HHHHcCccCCCccce-eeeeeeeEEccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHh
Confidence 333344445667777 67776543 78899889999999999987 13
Q ss_pred CchHHHHHHhhcCCCCCcccCHHHHHHHH-HH-------HHHHHHHHHHH-------HHhcCCcccCCC-CCCC-ChHHH
Q 014658 185 HPLALRHFLISAHYRSPLNYSVLQLDSAS-DA-------VFYIYQTLQDC-------EVALSPFQEHGK-TARI-NPAAE 247 (421)
Q Consensus 185 g~D~lR~~ll~~~~~~d~~fs~e~l~~~~-~~-------l~~l~~~l~~~-------~~~~~~~~~~~~-~~~~-d~~l~ 247 (421)
| .+.|.=|+++--+|.-||.+.+-+-. |+ +.|+.+.++.. ...+..- +.. .+.. +..+-
T Consensus 497 G--ciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~~lkkT--~ki~LDH~~E~kLg 572 (656)
T KOG4426|consen 497 G--CIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIARKSGKDNVDLIKELKKT--GKIALDHEKEWKLG 572 (656)
T ss_pred c--chhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHHHHHHHcCCchhhHHHHHHhc--CccccCCHHHHHHH
Confidence 3 25555566555667778877664422 22 23333333210 0111100 000 1111 12344
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh------hhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 248 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ------QQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 248 ~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~------~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
..+-.+.+.+..+. +++=++..+.. ++++...+..|++++-...+.+ -.-.++.+|.++..+++..+.||||
T Consensus 573 ~~lLkf~e~v~~~~-~~L~lh~lC~y-~y~l~t~Ft~FY~~Cyv~e~~~eg~i~~vn~sRllLCeata~VmrkcF~iLGi 650 (656)
T KOG4426|consen 573 KHLLKFAEIVEKAL-DSLFLHVLCDY-LYELATLFTEFYDSCYVIEKNKEGEIPFVNMSRLLLCEATAAVMRKCFHILGI 650 (656)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHhhccEEeccccccccccchhHHHHHHHHHHHHHHHhhHhhCC
Confidence 55677778888888 89999999999 9999999999998776532111 1134677889999999999999999
Q ss_pred CCC
Q 014658 322 LPP 324 (421)
Q Consensus 322 ~~~ 324 (421)
.|.
T Consensus 651 ~pV 653 (656)
T KOG4426|consen 651 KPV 653 (656)
T ss_pred ccc
Confidence 764
No 109
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.011 Score=60.47 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=101.7
Q ss_pred CcccccccCCccCHHHHHH----------------------------hcCchHHHHHHhhcCCCCCcccCHHHHHHHHH-
Q 014658 164 NEKMSKSLGNFFTIRQITE----------------------------RYHPLALRHFLISAHYRSPLNYSVLQLDSASD- 214 (421)
Q Consensus 164 G~KMSKSlGN~i~~~dll~----------------------------~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~- 214 (421)
++=||..+|+++.+.|+++ ..|.-++..-.+...-.++..|+|+.+-....
T Consensus 365 v~GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gd 444 (567)
T KOG1195|consen 365 VQGMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGD 444 (567)
T ss_pred cccccccCCceeeHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCC
Confidence 4568888888888887776 35555666555555445566777776644321
Q ss_pred -H--HHHHHHHHHHHHHhcCCcccC--------CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Q 014658 215 -A--VFYIYQTLQDCEVALSPFQEH--------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 283 (421)
Q Consensus 215 -~--l~~l~~~l~~~~~~~~~~~~~--------~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N 283 (421)
. +.--..||..+...++..... ...++.-..++..+..+.+.+..+| ++++....+.. |+.++.+++
T Consensus 445 tg~yLQY~HsRL~Slerk~~~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~-e~lE~~~lV~Y-L~~La~a~s 522 (567)
T KOG1195|consen 445 TGPYLQYTHSRLRSLERKFSDVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM-EQLEPCTLVTY-LFKLAHAVS 522 (567)
T ss_pred chHHHHHHHHHHHHHHHhccccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH-HhhcchhHHHH-HHHHHHHHH
Confidence 1 111112333333222211110 0011222345677888889999999 99999999999 999999999
Q ss_pred HHHhhhcccCc-hhhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 284 SSLNMLKKKQP-KQQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 284 ~yi~~~~pw~~-~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
+.+........ ....-.++.+..++..+|.+.+++|||.|.
T Consensus 523 ~~yk~l~V~d~~~eia~aRL~Lf~AvRqVL~ngm~lLGitPv 564 (567)
T KOG1195|consen 523 SAYKILWVKDSPMEIALARLLLFSAVRQVLNNGMRLLGITPV 564 (567)
T ss_pred hHHhheeecCCcHHHHHHHHHHHHHHHHHHHhHHHHhCCCcc
Confidence 98876554321 112234677888999999999999999874
No 110
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=96.99 E-value=0.0036 Score=49.07 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-HH
Q 014658 207 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NS 284 (421)
Q Consensus 207 e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~-N~ 284 (421)
+.|.++.+.+.+|++.+..+. . . .+..+.++|.++|+||||+|.|+.. |+++++.+ |.
T Consensus 2 e~L~~A~~~l~rl~~~l~~~~--------~----~-------~~~~~~~~F~~AL~DDLNTp~Ala~-L~~l~k~i~~~ 60 (81)
T cd07955 2 EVLADAEARLARWRSAVALPD--------G----P-------DAEALVARLREALADDLDTPKALAA-LDAWAREALSR 60 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhcc--------c----c-------cHHHHHHHHHHHHHhhCChHHHHHH-HHHHHHHHHhc
Confidence 578888888888887776431 0 0 1234668999999999999999999 99999877 54
No 111
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.91 E-value=0.0014 Score=63.29 Aligned_cols=69 Identities=19% Similarity=0.070 Sum_probs=42.9
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhh
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
.|+..||.|.. +|++.-.=...-+...++ +-+|+.+|. .+|.|||||.+|.+. ..+ .-+|+.++=++..
T Consensus 152 ~~l~~~G~DQ~-~~i~~~rd~a~r~~~~~~--~~l~~~ll~~l~G~KMSKS~~~~~~-i~l--~dsp~~i~~Ki~~ 221 (269)
T cd00805 152 VDLQLGGSDQR-GNITLGRDLIRKLGYKKV--VGLTTPLLTGLDGGKMSKSEGNAIW-DPV--LDSPYDVYQKIRN 221 (269)
T ss_pred CCeeEecHHHH-HHHHHHHHHHHHhCCCCc--EEEeeccccCCCCCcccCCCCCccc-ccC--CCCHHHHHHHHHc
Confidence 59999999987 566554444333333322 335667775 799999999999883 111 2345555545444
No 112
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=96.59 E-value=0.01 Score=58.76 Aligned_cols=168 Identities=20% Similarity=0.234 Sum_probs=87.4
Q ss_pred CCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----------------CCCccccccccch--hh-
Q 014658 3 DLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------------SPNYGRLSGQRLE--NN- 63 (421)
Q Consensus 3 ~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----------------~~~Yg~ls~~~~~--~~- 63 (421)
-||+....-..+-|++.+...+++++|+++|.||. .||+.. -+.|..-. +++. ++
T Consensus 62 wlGl~~D~~~~~QS~r~~~Y~~~~~~L~~~g~aY~-----C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c-~~~~~~~~~ 135 (314)
T PF00749_consen 62 WLGLEWDYGPYYQSDRLEIYQEAAEKLIDKGKAYP-----CFCSREELKAAREAQEGAGCPHRPRYPGTC-RELTEEEMR 135 (314)
T ss_dssp HHT---STCEEEGGGGHHHHHHHHHHHHHTTSEEE-----EESEHHHHHHHHHHHHHTTSTTTTSBHHHH-HCHHHHHHH
T ss_pred EEEEecCCeEEeHHHHHHHHHHHHHHHhhcCCCcc-----ccCCHHHHHHHHHHhhccCCCccccchhhh-hhhhHHHHH
Confidence 46776433566679999999999999999999994 343321 12232211 1111 11
Q ss_pred ---hCCCC----ccccc----------------cccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCC
Q 014658 64 ---RAGER----VAVDS----------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120 (421)
Q Consensus 64 ---~~g~~----v~~~~----------------~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~ 120 (421)
..|.. +.++. ......||+++|+ .|.|..|..| +.-....|
T Consensus 136 ~~~~~~~~~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~D~vi~r~-------------dg~ptY~fA~-vVDD~~~g-- 199 (314)
T PF00749_consen 136 AGLAKGGPAVIRLKVPMESPIAFRDLVRGRIIFDPSDLGDFVIRRS-------------DGYPTYHFAV-VVDDHLMG-- 199 (314)
T ss_dssp HHHHTTTSEEEEE-SSSTCCEEEEETTTEEEEEEGGGSBTEEEEST-------------TSEB-HHHHH-HHHHHHTT--
T ss_pred hhhccCCceeeeeecccccccccccCcceeeeeccccCCchhcccc-------------ccCcccccce-eecccccc--
Confidence 11211 11110 0112245555554 3556678643 44344455
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCcc-CHHHHHH-hcCchHHHHHHhh
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFF-TIRQITE-RYHPLALRHFLIS 195 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i-~~~dll~-~yg~D~lR~~ll~ 195 (421)
++.-+=|.|++. ....-+.+..+++.++ +.+ .|+..++ .+|.|+||+.+-.. ....+.+ .+.+.++-=||..
T Consensus 200 ITHViRG~D~l~-~t~~Q~~L~~~Lg~~~-P~~-~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~ 274 (314)
T PF00749_consen 200 ITHVIRGEDLLS-STPRQILLYEALGWPP-PPY-AHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLAR 274 (314)
T ss_dssp -SEEEEEGGGTT-CHHHHHHHHHHCTSSS--EE-EEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHH
T ss_pred cCeEEEcccccc-ccHHHHHHHHHhCCCC-cce-EeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHH
Confidence 444444799655 2333334446665544 334 6766554 68999999998754 3444443 3566555555544
No 113
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.56 E-value=0.0032 Score=60.99 Aligned_cols=56 Identities=18% Similarity=-0.053 Sum_probs=34.7
Q ss_pred CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCH
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTI 177 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~ 177 (421)
..++..||.|... |++.-+=...-+...+.+.. +++-.|+ .+|.|||||.||.+..
T Consensus 153 ~~~~vp~G~DQ~~-~i~l~rdla~r~n~~~~p~~-l~~p~l~~l~G~KMSKS~~~~i~l 209 (273)
T cd00395 153 GCDIQPGGSDQWG-NITLGRELARRFNGFTIAEG-LTIPLVTKLDGPKFGKSESGPKWL 209 (273)
T ss_pred CCcEEEecHHHHH-HHHHHHHHHHHhCCCCCCeE-EeeccccCCCCCcCCCCCCCCccc
Confidence 3599999999765 55433333333332222333 3435555 6999999999998743
No 114
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=96.55 E-value=0.016 Score=48.72 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCch--hhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 243 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 243 d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~--~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
+..++..+..+.+.+..++ .+.+++.++.. +.++...+|.|++........ .....++..+.++...+..++++||
T Consensus 38 E~~L~~~i~~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~fy~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llg 115 (122)
T smart00836 38 ELALLRLLARFPEVLEAAA-ETLEPHRLANY-LYDLASAFHSFYNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLG 115 (122)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHCCcHHHHHH-HHHHHHHHHHHHccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566777778888888888 79999999999 999999999999987765432 1234578889999999999999999
Q ss_pred cCCC
Q 014658 321 LLPP 324 (421)
Q Consensus 321 i~~~ 324 (421)
|.|.
T Consensus 116 i~~~ 119 (122)
T smart00836 116 ISAP 119 (122)
T ss_pred CCcc
Confidence 9764
No 115
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=96.48 E-value=0.007 Score=60.17 Aligned_cols=79 Identities=19% Similarity=0.113 Sum_probs=49.0
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEEeeeeee----eCCcccccccCC-ccCHHH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWMHNGHVT----NNNEKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~h~g~l~----~~G~KMSKSlGN-~i~~~d 179 (421)
.-|+.+.|=...|+..+|.|.. +|++.-.-...-++ +. +-+.. +|+.++. .+|.|||||.+| .|.+.|
T Consensus 129 ~lqaaDil~~~~d~vpvG~DQ~-~h~elaRdia~r~n~~~~~~f~~P~~-l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D 206 (328)
T TIGR00233 129 VLQAADILLYQADLVPVGIDQD-QHLELTRDLAERFNKKFKNFFPKPES-LISKFFPRLMGLSGKKMSKSDPNSAIFLTD 206 (328)
T ss_pred HHHHhhhhhcCCCeeecccccH-HHHHHHHHHHHHhhhhcCcccCCChh-hhccccCCCCCCCCCcCCCCCCCCeEeecC
Confidence 4566666656789999999984 57766555554443 11 12223 3434432 356899999997 777655
Q ss_pred HHHhcCchHHHHHHhh
Q 014658 180 ITERYHPLALRHFLIS 195 (421)
Q Consensus 180 ll~~yg~D~lR~~ll~ 195 (421)
+++.++=-+.+
T Consensus 207 -----~~e~I~~KI~~ 217 (328)
T TIGR00233 207 -----TPKQIKKKIRK 217 (328)
T ss_pred -----CHHHHHHHHHh
Confidence 55556555544
No 116
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=96.46 E-value=0.0032 Score=64.38 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=47.6
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
...||..||.|..+ |+..-+=...-++..++ +-++.-.++ .+|.|||||.||.|.+.| ++.+|..++=++++.
T Consensus 185 ~~~~iq~gG~DQ~~-ni~~grdl~~r~~~~~~--~~lt~PlL~g~dG~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (410)
T PRK13354 185 EDVDLQIGGTDQWG-NILMGRDLQRKLEGEEQ--FGLTMPLLEGADGTKMGKSAGGAIWLDP--EKTSPYEFYQFWMNI 258 (410)
T ss_pred CCCCEEEecHHHHH-HHHHHHHHHHHhCCCCc--eEeccCCccCCCCCccCCCCCCceeccC--CCCCHHHHHHHHHcC
Confidence 47899999999765 44433333333433322 223434443 689999999999998877 456677777666643
No 117
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=96.36 E-value=0.0032 Score=64.45 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
...||.+||.|... |++.-.=...-++.++. +-++.-.|+ .+|+|||||.||.|.+.| ++.+|..++=++++.
T Consensus 187 ~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~--~~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 260 (408)
T PRK05912 187 YGCDLQLGGSDQWG-NILSGRDLQRRYGGKPQ--FGLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMNI 260 (408)
T ss_pred CCCCEEeccHHHHH-HHHHHHHHHHHhCCCCe--EEEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhcC
Confidence 37899999999885 66543333333333321 213334443 689999999999999887 566777887777653
No 118
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.0083 Score=61.30 Aligned_cols=51 Identities=49% Similarity=0.681 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEeCccc
Q 014658 347 EDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLV 397 (421)
Q Consensus 347 ~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~~~~~ 397 (421)
+++.+..++|..++++|+++++|++|++++..||.++|.|.++.|+...++
T Consensus 526 e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~a~~~i~p~~~f~~~~ys 576 (586)
T KOG2007|consen 526 EELLQEREEKTSAEKNKDKEKSDRIREELAAKGIALMKIPPEEMFRPDKYS 576 (586)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHhhcCChhhhccccccc
Confidence 446777888889999999999999999999999999999999999985444
No 119
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=96.02 E-value=0.0044 Score=61.63 Aligned_cols=68 Identities=25% Similarity=0.162 Sum_probs=42.1
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEE--eeeeee-eCCcccccccCCccCHH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWM--HNGHVT-NNNEKMSKSLGNFFTIR 178 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~--h~g~l~-~~G~KMSKSlGN~i~~~ 178 (421)
.-|+.+.|=+..|+-.+|.|... |++...-...-++ +. +.+...+ |+-.+. .+|.|||||.+|.|.+.
T Consensus 139 vLqAADIl~~~~d~VpvG~DQ~q-hleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~ 214 (332)
T PRK12556 139 ILMAADILLFQATHVPVGKDQIQ-HIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLF 214 (332)
T ss_pred HHHhhhhhhccCCEEEeccccHH-HHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCccccc
Confidence 34666666556799999999764 7766544433322 21 2223322 444443 68999999999988543
No 120
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=95.57 E-value=0.0088 Score=58.48 Aligned_cols=70 Identities=23% Similarity=0.065 Sum_probs=42.7
Q ss_pred hhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC---CCCcEEEeeeeee-eCCc-ccccccCC-ccCHHH
Q 014658 108 ECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD---SNVSYWMHNGHVT-NNNE-KMSKSLGN-FFTIRQ 179 (421)
Q Consensus 108 ecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~---~~~~~~~h~g~l~-~~G~-KMSKSlGN-~i~~~d 179 (421)
...-|+.+++-...|+..||.|... |+..-.-...-++.+ +.+ ..+++-++. .+|. |||||.+| .|.+.|
T Consensus 137 Yp~lQaaD~~~l~~~~~~~G~DQ~~-~~~l~rd~a~k~~~~~~~~~p-~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d 212 (292)
T PF00579_consen 137 YPLLQAADILLLKADLVPGGIDQRG-HIELARDLARKFNYKEIFPKP-AGLTSPLLPGLDGQKKMSKSDPNSAIFLDD 212 (292)
T ss_dssp HHHHHHHHHHHTTHSEEEEEGGGHH-HHHHHHHHHHHHTHHSTSSS--EEEEETCBBSTTSSSBTTTTTTGGS-BTTT
T ss_pred cccccccceeeeccccccccchHHH-HHHHHHHHHhhhcccccccCc-hheeeccccccCCccccCccCCccEEEEec
Confidence 3345666665556789999999754 444333333333322 223 335556775 6888 99999999 776654
No 121
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=95.42 E-value=0.013 Score=59.27 Aligned_cols=78 Identities=17% Similarity=0.010 Sum_probs=48.3
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-e-CC-cccccccCC-ccCHHHHHHhcCc
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSLGN-FFTIRQITERYHP 186 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSlGN-~i~~~dll~~yg~ 186 (421)
-|+.+.+-...|+..+|.|... |++.-.-....++.. +..+.+|+.+|. + +| .|||||.+| .|.+.| ++
T Consensus 201 LQaaDil~l~adivpvG~DQ~~-~~~LaRdia~~~~~~-~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I~L~D-----sp 273 (383)
T PTZ00126 201 MQCADIFYLKADICQLGMDQRK-VNMLAREYCDKKKIK-KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMED-----SE 273 (383)
T ss_pred HHhhhhhccCCCEEEeCccHHH-HHHHHHHHHHHhCCC-CCceeecccccccCCCCCCCCCcCCCCCeecCCC-----CH
Confidence 3555555567899999999864 444333222333322 233446667775 5 45 799999988 577765 56
Q ss_pred hHHHHHHhh
Q 014658 187 LALRHFLIS 195 (421)
Q Consensus 187 D~lR~~ll~ 195 (421)
+.+|=-+.+
T Consensus 274 e~I~kKI~k 282 (383)
T PTZ00126 274 EDVNRKIKK 282 (383)
T ss_pred HHHHHHHHh
Confidence 666655555
No 122
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=95.34 E-value=0.18 Score=50.29 Aligned_cols=79 Identities=19% Similarity=0.134 Sum_probs=44.6
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CCCC---CcEEE-eeeeee-eCC-cccccccCCccCHHHHH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QDSN---VSYWM-HNGHVT-NNN-EKMSKSLGNFFTIRQIT 181 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~~~---~~~~~-h~g~l~-~~G-~KMSKSlGN~i~~~dll 181 (421)
-|+.+.+=...|+..+|.|... |++.-.-+..-++ +.|. +...+ |+..|. ++| .|||||.+|.|.+.|
T Consensus 133 lqaaDIl~~~~d~vpvG~DQ~~-h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D-- 209 (333)
T PRK12282 133 SQAADITAFKATLVPVGDDQLP-MIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD-- 209 (333)
T ss_pred HHHHHHHhhCCCEEEeccccHH-HHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC--
Confidence 4555533335799999999765 5554444333332 2221 22212 223333 466 899999999887665
Q ss_pred HhcCchHHHHHHhh
Q 014658 182 ERYHPLALRHFLIS 195 (421)
Q Consensus 182 ~~yg~D~lR~~ll~ 195 (421)
+++.++=-+.+
T Consensus 210 ---~pe~I~kKI~~ 220 (333)
T PRK12282 210 ---DADTIKKKVMS 220 (333)
T ss_pred ---CHHHHHHHHHh
Confidence 55555544443
No 123
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=95.30 E-value=0.012 Score=59.98 Aligned_cols=80 Identities=20% Similarity=0.071 Sum_probs=46.7
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhc---cC-C--CCCcEEE--eeeeee-eCCcccccccCCccCHHHH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA---CQ-D--SNVSYWM--HNGHVT-NNNEKMSKSLGNFFTIRQI 180 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~---~~-~--~~~~~~~--h~g~l~-~~G~KMSKSlGN~i~~~dl 180 (421)
.-|+.++|=+..|+-.+|.|... |++.-.=+..-+ ++ + +.+...+ |+..|. ++|.|||||.+|.|.+.|
T Consensus 138 vLqAADILly~ad~VPVG~DQ~q-HlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~n~I~L~D- 215 (431)
T PRK12284 138 VLMAADILMFNAHKVPVGRDQIQ-HIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYDNTIPLFA- 215 (431)
T ss_pred HHHHhhhhhcCCCEEEEcchhHH-HHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCCCEeeecC-
Confidence 45666666666799999999865 766543333222 11 1 1122223 222333 589999999999996553
Q ss_pred HHhcCchHHHHHHhh
Q 014658 181 TERYHPLALRHFLIS 195 (421)
Q Consensus 181 l~~yg~D~lR~~ll~ 195 (421)
+++.+|=-+.+
T Consensus 216 ----s~~~I~kKI~~ 226 (431)
T PRK12284 216 ----PREELKKAIFS 226 (431)
T ss_pred ----CHHHHHHHHhc
Confidence 44455544443
No 124
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=94.75 E-value=0.021 Score=56.85 Aligned_cols=77 Identities=22% Similarity=0.169 Sum_probs=47.9
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCc--cccccc-CCccCHHHHHHhcCc
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE--KMSKSL-GNFFTIRQITERYHP 186 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~--KMSKSl-GN~i~~~dll~~yg~ 186 (421)
-|+.+.+-...|+..+|.|... |++.-.-...-++...+ -. +++.+|. ++|. |||||. ||.|.+.| ++
T Consensus 159 lqaaDil~~~ad~vpvG~DQ~~-h~~l~Rdia~~~n~~~p-~~-l~~~~l~~L~g~~~KMSKS~p~~~I~L~D-----~~ 230 (329)
T PRK08560 159 MQVADIFYLDVDIAVGGMDQRK-IHMLAREVLPKLGYKKP-VC-IHTPLLTGLDGGGIKMSKSKPGSAIFVHD-----SP 230 (329)
T ss_pred HHHHHHHHhCCCEEEechhHHH-HHHHHHHhhHhcCCCCc-eE-EEcCccCCCCCCCCCCcCCCCCCeecccC-----CH
Confidence 4555655567899999999764 55544444333333332 23 4446665 6776 999999 99998765 34
Q ss_pred hHHHHHHhh
Q 014658 187 LALRHFLIS 195 (421)
Q Consensus 187 D~lR~~ll~ 195 (421)
+.+|==+.+
T Consensus 231 ~~I~~KI~k 239 (329)
T PRK08560 231 EEIRRKIKK 239 (329)
T ss_pred HHHHHHHHh
Confidence 444444433
No 125
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.57 E-value=0.024 Score=57.37 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=24.6
Q ss_pred eeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 158 GHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 158 g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
..|. ++|.|||||.+|.|.+.| +++.+|=-+.+.
T Consensus 255 ~~I~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~a 289 (398)
T PRK12283 255 SKMPGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRTM 289 (398)
T ss_pred CcccCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHhC
Confidence 4444 588999999999988765 566666555553
No 126
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.55 E-value=0.02 Score=57.70 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=44.3
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhc----cCCCCCcEEEeeeeee-eCCccccccc-CCccCHHHHHHhcCchHHHHH
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAA----CQDSNVSYWMHNGHVT-NNNEKMSKSL-GNFFTIRQITERYHPLALRHF 192 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~----~~~~~~~~~~h~g~l~-~~G~KMSKSl-GN~i~~~dll~~yg~D~lR~~ 192 (421)
+..++..+|.|.. ||++.-.-...-+ +-..|. . +|+-++. ++|.|||||. +|.|.+.| +++.++=-
T Consensus 202 ~~~~lvPvG~DQ~-~h~~ltRdiA~r~n~~~gf~~P~-~-l~~~~lpgL~G~KMSkS~~~s~I~L~D-----~p~~I~kK 273 (368)
T PRK12285 202 PKPTLVPVGIDQD-PHIRLTRDIAERLHGGYGFIKPS-S-TYHKFMPGLTGGKMSSSKPESAIYLTD-----DPETVKKK 273 (368)
T ss_pred CCceEEEeccchH-HHHHHHHHHHHHHhhhcCCCCch-h-HhhhcccCCCCCcCCCCCCCCeeeccC-----CHHHHHHH
Confidence 4567899999974 5776655444444 222333 3 3446664 7899999998 67888765 55555555
Q ss_pred Hhh
Q 014658 193 LIS 195 (421)
Q Consensus 193 ll~ 195 (421)
+.+
T Consensus 274 I~k 276 (368)
T PRK12285 274 IMK 276 (368)
T ss_pred HHh
Confidence 444
No 127
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=94.43 E-value=0.035 Score=54.01 Aligned_cols=79 Identities=20% Similarity=0.162 Sum_probs=48.6
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccC---C--CCCcEEEee--eeee-eCC--cccccccC-CccCHH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ---D--SNVSYWMHN--GHVT-NNN--EKMSKSLG-NFFTIR 178 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~---~--~~~~~~~h~--g~l~-~~G--~KMSKSlG-N~i~~~ 178 (421)
.-|+.+.+=...|+..+|.|.. +|++.-.-...-++. . +.+.. +|+ ..|. .+| .|||||.| |.|.+.
T Consensus 127 ~lqaaDil~~~~~~vpvG~DQ~-~h~~l~Rdia~r~n~~~~~~~~~P~~-l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~ 204 (280)
T cd00806 127 VLQAADILLYKACLVPVGIDQD-PHLELTRDIARRFNKLYGEIFPKPAA-LLSKGAFLPGLQGPSKKMSKSDPNNAIFLT 204 (280)
T ss_pred HHHHhhhhhccCCEEeeccccH-HHHHHHHHHHHHhccccccccCCCee-eccCCCccccCCCCCCcccCCCCCCeEEee
Confidence 3456665555678889999975 476655555444441 1 22333 455 4443 455 59999998 998876
Q ss_pred HHHHhcCchHHHHHHhh
Q 014658 179 QITERYHPLALRHFLIS 195 (421)
Q Consensus 179 dll~~yg~D~lR~~ll~ 195 (421)
| +++.+|=-+.+
T Consensus 205 d-----~~~~i~~KI~~ 216 (280)
T cd00806 205 D-----SPKEIKKKIMK 216 (280)
T ss_pred C-----CHHHHHHHHHh
Confidence 5 55555554444
No 128
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=94.29 E-value=0.027 Score=56.22 Aligned_cols=80 Identities=21% Similarity=0.089 Sum_probs=47.4
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEEe-e-eeee-eCCc--ccccccC---CccC
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWMH-N-GHVT-NNNE--KMSKSLG---NFFT 176 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~h-~-g~l~-~~G~--KMSKSlG---N~i~ 176 (421)
.-|+.+.+-...|+..+|.|..+ |++.-.-...-++ +. +-+...++ + ..|. ++|. |||||.+ |.|.
T Consensus 128 ~lQaaDil~~~~divpvG~DQ~~-h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~ 206 (333)
T PRK00927 128 VLMAADILLYKADLVPVGEDQKQ-HLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTIN 206 (333)
T ss_pred HHHHHHHHhcCCCEEeeccchHH-HHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEE
Confidence 45666666567899999999854 6655544433332 11 12223222 1 2233 5775 9999999 8888
Q ss_pred HHHHHHhcCchHHHHHHhh
Q 014658 177 IRQITERYHPLALRHFLIS 195 (421)
Q Consensus 177 ~~dll~~yg~D~lR~~ll~ 195 (421)
+.| +++.++=-+.+
T Consensus 207 l~D-----~~~~I~~KI~~ 220 (333)
T PRK00927 207 LLD-----DPKTIAKKIKK 220 (333)
T ss_pred eeC-----CHHHHHHHHHh
Confidence 765 55555554444
No 129
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.92 E-value=0.047 Score=53.56 Aligned_cols=68 Identities=18% Similarity=0.006 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEEeee--eee-eCC-cccccccCC-ccCHHH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWMHNG--HVT-NNN-EKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~h~g--~l~-~~G-~KMSKSlGN-~i~~~d 179 (421)
+-|+.++|=+..++-..|.|.. ||.+-..-+..-++ +. +.+...+| . .+. ++| .|||||.+| +|.+.|
T Consensus 135 vlqAADILl~~a~~VPVG~DQ~-qHleLtRDiA~rfn~~y~~~f~~P~~~~~-~~~~i~gL~g~~KMSkS~~ns~I~L~D 212 (314)
T COG0180 135 VLQAADILLYQATLVPVGEDQD-QHLELTRDIARRFNHLYGEVFPLPEALIS-KVARLPGLDGPGKMSKSDPNSAIFLLD 212 (314)
T ss_pred HHHHHHhhhccCCeeccCCCch-HHHHHHHHHHHHHHhhcCCccCCcccccc-CCCcccCCCCCCcccccCCCCeeeccC
Confidence 4577777766778889999975 58776655444432 11 23334233 5 554 678 899999999 776543
No 130
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.25 E-value=0.085 Score=53.63 Aligned_cols=51 Identities=22% Similarity=0.068 Sum_probs=34.6
Q ss_pred CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCC
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN 173 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN 173 (421)
..||.+||.|.-+.|..=--- ..-++. .+.+-+|+-.|+ .+|.|||||.||
T Consensus 180 ~~dlq~GG~DQ~~ni~~grdl-~rr~g~--~~~~~lt~PLL~~ldG~KmgKs~~~ 231 (401)
T COG0162 180 NKDLQLGGSDQWGNILAGRDL-IRRLGQ--KKVVGLTTPLLTGLDGKKMGKSEGG 231 (401)
T ss_pred ccchhcCChHHHHHHHHHHHH-HHHhCC--CCeEEEEeccccCCCCCcccccCCC
Confidence 468999999988876532211 222333 233557767766 699999999999
No 131
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=92.13 E-value=0.12 Score=56.02 Aligned_cols=67 Identities=16% Similarity=0.006 Sum_probs=40.8
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eC-C-ccccccc-CCccCHHH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-N-EKMSKSL-GNFFTIRQ 179 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~-G-~KMSKSl-GN~i~~~d 179 (421)
-|+.+.+-...|+..+|.|.. +|++.-.-...-+ +..+.-+.+|+.++. ++ | .|||||. +|.|.+.|
T Consensus 166 LQAADIl~l~adivpvG~DQ~-qh~eLaRdia~~~-g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~D 236 (682)
T PTZ00348 166 MQCADIFFLKADICQLGLDQR-KVNMLAREYCDLI-GRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMED 236 (682)
T ss_pred HHhhcccccCCCEEEeCccHH-HHHHHHHHHHHHh-CCCCCceecccccCcCCCCCCCcCCCCCCCCeecccC
Confidence 455566666788999999976 4655433333323 322233446655553 44 4 6999999 68887554
No 132
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=92.05 E-value=0.95 Score=45.96 Aligned_cols=102 Identities=19% Similarity=0.260 Sum_probs=59.2
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEee-cccCcCcchHHHHHH---HHhccCCCCCcEEEeeeeee-eCCcccccccCCc
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGG-GIDLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNF 174 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~g-G~Dli~pH~~~~~a~---~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~ 174 (421)
.|+|.+|..|. .-.+..| +. |++ |.+ |..+.+-+ -.|+ +-+++++ .|--.++ .+|.|.||..|.
T Consensus 220 DgfPTYHfAnV-VDDh~M~--Is-HViRGeE----WlpST~KH~lLYkAf-gW~pPkF-aHlpLl~n~d~sKLSKRqgD- 288 (524)
T KOG1149|consen 220 DGFPTYHFANV-VDDHLMG--IS-HVIRGEE----WLPSTLKHILLYKAF-GWQPPKF-AHLPLLLNPDGSKLSKRQGD- 288 (524)
T ss_pred CCCcceeeeee-ecchhcc--hh-heeecch----hccccHHHHHHHHHh-CCCCCce-eeeeeeecCCcchhhhhcCc-
Confidence 68999998663 2122222 11 222 444 33333222 2344 4344545 6766655 699999999998
Q ss_pred cCHHHHHH-hcCchHHHHHHhh-c-CC-CCCcccCHHHHHHH
Q 014658 175 FTIRQITE-RYHPLALRHFLIS-A-HY-RSPLNYSVLQLDSA 212 (421)
Q Consensus 175 i~~~dll~-~yg~D~lR~~ll~-~-~~-~~d~~fs~e~l~~~ 212 (421)
+.+..+.+ .|=|+++==|+.. + ++ ..+--||.+.|.+.
T Consensus 289 ~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~f~sl~eLieq 330 (524)
T KOG1149|consen 289 ASVSHYREQGYLPEALLNYIALLGWGFRTENEFFSLEELIEQ 330 (524)
T ss_pred chHHHHHHcCCChHHHHHHHHHcCCCcccccccccHHHHHHH
Confidence 44555554 5778888767665 3 44 44456777777664
No 133
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=91.86 E-value=0.12 Score=52.43 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=35.1
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHH
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQ 179 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~d 179 (421)
++.+++-...|+..||.|..+ |..--.-...-....+. +-+..-.++ .+|.|||||.||.|...+
T Consensus 169 Qa~D~~~l~~di~~gG~DQ~~-ni~~g~dLar~~~~~~~--~~~t~pLl~~~dg~KmgKS~~~~i~l~~ 234 (377)
T TIGR00234 169 QAYDFVYLNVDLQIGGSDQWG-NIRKGRDLIRRNLPSLG--FGLTVPLLTPADGEKMGKSGGGAVSLDE 234 (377)
T ss_pred HHHHHHHHcCCeeEecchhHH-HHHHHHHHHHHhcCCCc--eeeceeeecCCCCCCccCCCCCcccCCc
Confidence 333433334689999999744 33322222222222221 112223333 579999999999877543
No 134
>PLN02486 aminoacyl-tRNA ligase
Probab=90.47 E-value=0.31 Score=49.48 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=39.2
Q ss_pred EeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHHHHHHhcCchHHHHHHhh
Q 014658 124 HGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 124 h~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~dll~~yg~D~lR~~ll~ 195 (421)
-..|.|. .||+....-...-++...| ..+|+.++. +.| .|||||.+| .|.+.| +++.++=.+..
T Consensus 223 VPvG~DQ-d~~~~ltRdia~r~~~~kp--~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 223 IPCAIDQ-DPYFRMTRDVAPRLGYYKP--ALIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred eecccch-HHHHHHHHHHHHHhCCCCc--ceeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 3346775 4566655544444444333 335656664 566 799999988 688776 66666655554
No 135
>PLN02886 aminoacyl-tRNA ligase
Probab=81.65 E-value=1.3 Score=45.05 Aligned_cols=34 Identities=21% Similarity=0.038 Sum_probs=23.4
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHh
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA 144 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a 144 (421)
.-|+.++|=+..|+-.+|.|... |++.-.-...-
T Consensus 174 vLqAADILl~~a~~VPVG~DQ~q-H~eLtRdiA~r 207 (389)
T PLN02886 174 VLMASDILLYQADLVPVGEDQKQ-HLELTRDIAER 207 (389)
T ss_pred HHHHhhhhhcCCCeEEEccchHH-HHHHHHHHHHH
Confidence 45666666667899999999764 77766555433
No 136
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.02 E-value=1 Score=46.92 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=34.0
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeC
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 39 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~ 39 (421)
.-|||. |+.++..|+|.+.|.++..+|+..|-||+.|
T Consensus 260 ~~LgIk-pd~~TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 260 SLLGIK-PDRVTYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred HHhCcC-cceeeechhhHHHHHHHHHHHHhcCcccccC
Confidence 458997 7999999999999999999999999999864
No 137
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=58.87 E-value=8.5 Score=43.15 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=38.4
Q ss_pred CCCCCCCCCC----ccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 1 MADLQCLPPT----YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 1 m~~Lnv~~p~----~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
|++||+. .| ..+-..+|...+..+..+|.++|++|....-|+||..+-
T Consensus 111 ~~~lGi~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~ 162 (805)
T PRK00390 111 LKSLGFS-YDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDG 162 (805)
T ss_pred HHHhCCc-ccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcC
Confidence 3567776 34 333345699999999999999999999999999997653
No 138
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=57.59 E-value=23 Score=22.93 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHhHhc
Q 014658 349 VLQLIEERAAARKNKDFSKSDQIRADLTRK 378 (421)
Q Consensus 349 i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~ 378 (421)
+..|-..-..|-.+-+|+.|=.|||++..+
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l 33 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAARLRDQIKAL 33 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 445555566666899999999999987653
No 139
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=57.08 E-value=5.2 Score=38.74 Aligned_cols=50 Identities=24% Similarity=0.096 Sum_probs=29.3
Q ss_pred CceEEeecccCcCcchHHHHHHHH--hccCCCCCcEEEeeeeee-e-CCcccccccCCc
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSC--AACQDSNVSYWMHNGHVT-N-NNEKMSKSLGNF 174 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~--a~~~~~~~~~~~h~g~l~-~-~G~KMSKSlGN~ 174 (421)
.+|+++||.|...- |..|--. .++-+ +++.+-|-+|- + .|+|||+|--|.
T Consensus 177 ~vD~qfgGvDQRKI---f~~A~eylp~l~yk--KrihLmnpMvPGL~q~~KMSsSd~~S 230 (360)
T KOG2144|consen 177 EVDAQFGGVDQRKI---FVLAEEYLPDLGYK--KRIHLMNPMVPGLAQGEKMSSSDPLS 230 (360)
T ss_pred hhhHHhcCccHHHH---HHHHHHhhhhhCcc--cceeecCCCCccccccCccccCCccc
Confidence 48999999997542 2222211 12222 44434446663 3 499999997663
No 140
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=47.74 E-value=18 Score=40.82 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=37.2
Q ss_pred CCCCCCCC---CCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 1 MADLQCLP---PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 1 m~~Lnv~~---p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
|++||+.. ....+-..+|...+..+..+|.++|++|....-|+||..+-
T Consensus 108 ~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~ 159 (842)
T TIGR00396 108 LQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDG 159 (842)
T ss_pred HHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCC
Confidence 35677762 12333445588888888899999999999999999997654
No 141
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=46.26 E-value=1e+02 Score=33.89 Aligned_cols=48 Identities=6% Similarity=0.069 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcc
Q 014658 242 INPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 291 (421)
Q Consensus 242 ~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~p 291 (421)
.++.+.+.+..+...+..++ ..-++..|+.. +..+...++.|++..-.
T Consensus 602 ~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD~VmV 649 (682)
T PRK01233 602 AEKALYAALEELKPKVEPAL-AAGDYQAALEA-LAALRPPVDAFFDNVMV 649 (682)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHhhhhHHHHHhCCCee
Confidence 34566677777777777777 67799999999 99999999999997655
No 142
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.35 E-value=20 Score=38.08 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=30.0
Q ss_pred CCCCCCCccccccccHHHHHHHHHHHHHcCCeee
Q 014658 4 LQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYV 37 (421)
Q Consensus 4 Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~ 37 (421)
||-. |..++-.|||.+++-++...||.+|.||+
T Consensus 310 LG~~-P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 310 LGFE-PYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred hCCC-ceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 5554 78899999999999999999999999997
No 143
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=41.85 E-value=1.4e+02 Score=32.97 Aligned_cols=48 Identities=4% Similarity=0.043 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcc
Q 014658 242 INPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKK 291 (421)
Q Consensus 242 ~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~p 291 (421)
.+..+...+..+...+...+ ..-++..++.. +..+...++.|++..-.
T Consensus 612 ~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD~VmV 659 (691)
T TIGR00211 612 KEKALFEAVLAIKMNAQESF-ESGDYETALEA-LAELRAPVDEFFDSVMV 659 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHHhhhHHHHHhCCCEe
Confidence 34556666666666667777 56699999999 99999999999998665
No 144
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=39.72 E-value=19 Score=40.37 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=38.5
Q ss_pred CCCCCCCCCC----ccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCC
Q 014658 1 MADLQCLPPT----YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP 50 (421)
Q Consensus 1 m~~Lnv~~p~----~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~ 50 (421)
|++||+. .| ..+--.+|...+..+..+|.++|++|....-|+||+.+-.
T Consensus 130 ~~~lg~s-~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t 182 (800)
T PRK13208 130 WRRLGLS-VDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCET 182 (800)
T ss_pred HHHhCee-eccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCC
Confidence 3567765 23 3444456999999999999999999999999999987653
No 145
>PF09121 Tower: Tower; InterPro: IPR015205 This domain adopts a secondary structure consisting of a pair of long, antiparallel alpha-helices (the stem) that support a three-helix bundle (3HB) at their end. The 3HB contains a helix-turn-helix motif and is similar to the DNA binding domains of the bacterial site-specific recombinases, and of eukaryotic Myb and homeodomain transcription factors. The Tower domain has an important role in the tumour suppressor function of BRCA2, and is essential for appropriate binding of BRCA2 to DNA []. ; PDB: 1IYJ_D 1MIU_A.
Probab=35.11 E-value=17 Score=24.44 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=22.5
Q ss_pred EEecCCCeEEEeCccchhhhcCCcchhhcCC
Q 014658 382 LMDMGKETIWRPCVLVEQEQEAPPAEKEKKP 412 (421)
Q Consensus 382 l~D~~~Gt~W~~~~~~~~~~~~~~~~~~~~~ 412 (421)
++-+++|+...|..++|+.++++-++-.+|+
T Consensus 1 mEK~~~G~~vFRn~RaEekEA~k~a~~qqkk 31 (42)
T PF09121_consen 1 MEKTPSGSYVFRNERAEEKEAAKHAEAQQKK 31 (42)
T ss_dssp EEE-SSSSEEEE-CCHHHHHHHHHHHHTTSH
T ss_pred CCccCCCceEeecchHHHHHHHHHHHHHHHH
Confidence 3567899999998888888877777766654
No 146
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.52 E-value=55 Score=33.25 Aligned_cols=57 Identities=18% Similarity=0.011 Sum_probs=31.5
Q ss_pred CCCceEEeecccCcCc---chHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHH
Q 014658 118 SSKFDIHGGGIDLIFP---HHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIR 178 (421)
Q Consensus 118 g~~~Dih~gG~Dli~p---H~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~ 178 (421)
.+.+.+++||.|..-. -+++-.-+ ...+..+-- +..-.++ ..|.|.-||-||.|.++
T Consensus 225 ~~g~~~QlGGsDQwGNitaG~dlI~ki---~~~~~~vfG-lT~PLlTsstG~KlGKSaGnAvWLd 285 (467)
T KOG2623|consen 225 NYGCRFQLGGSDQWGNITAGTDLIRKI---MPIQAFVFG-LTFPLLTSSTGAKLGKSAGNAVWLD 285 (467)
T ss_pred hcCeeEEecccccccccchHHHHHHHh---cccccceee-eeeeeEecCcchhhccCCCceEEec
Confidence 3468899999996432 11111111 111111111 2223444 48999999999998764
No 147
>COG3110 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.32 E-value=25 Score=32.20 Aligned_cols=18 Identities=22% Similarity=0.032 Sum_probs=14.5
Q ss_pred eeeeeCCcccccccCCcc
Q 014658 158 GHVTNNNEKMSKSLGNFF 175 (421)
Q Consensus 158 g~l~~~G~KMSKSlGN~i 175 (421)
.+|.+||.|||+|+.-.-
T Consensus 30 DlLvvdG~K~SgsLlk~k 47 (216)
T COG3110 30 DLLVVDGKKVSGSLLKGK 47 (216)
T ss_pred cEEEecCcccccccccCc
Confidence 577789999999986543
No 148
>PLN02563 aminoacyl-tRNA ligase
Probab=30.02 E-value=38 Score=38.85 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=36.5
Q ss_pred CCCCCCCC---CccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 2 ADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 2 ~~Lnv~~p---~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
++||+.-- ...+--.+|...+..+..+|.++|++|....-|+||..+-
T Consensus 191 ~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~ 241 (963)
T PLN02563 191 KSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALG 241 (963)
T ss_pred HHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcC
Confidence 45565421 2333345599999999999999999999999999997653
No 149
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=27.42 E-value=95 Score=22.87 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=23.8
Q ss_pred HHHHHHHhHhcCcEEEecCCCeEEEeCccchh
Q 014658 368 SDQIRADLTRKGIALMDMGKETIWRPCVLVEQ 399 (421)
Q Consensus 368 aD~IRd~L~~~GI~l~D~~~Gt~W~~~~~~~~ 399 (421)
.+++.+.|..+|+.++-.+++..|....|..|
T Consensus 21 ~~ei~~~L~~lg~~~~~~~~~~~~~v~~P~~R 52 (71)
T smart00874 21 AEEIEEILKRLGFEVEVSGDDDTLEVTVPSYR 52 (71)
T ss_pred HHHHHHHHHHCCCeEEecCCCCeEEEECCCCc
Confidence 46688889999999976544556877777644
No 150
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.20 E-value=56 Score=31.80 Aligned_cols=105 Identities=21% Similarity=0.121 Sum_probs=48.9
Q ss_pred CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhc-cCC-------CCCcEEEeeeeee----eC-Cc
Q 014658 99 GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA-CQD-------SNVSYWMHNGHVT----NN-NE 165 (421)
Q Consensus 99 g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~-~~~-------~~~~~~~h~g~l~----~~-G~ 165 (421)
|+++-|-...-.-++.+++=+.-+.-..|.|..- |.+ .+++.|- +++ |-+..++-.++=. -+ -.
T Consensus 134 ~~~~vGLftYPvLqAADILLYksThVPVGeDQsQ-Hle--L~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpek 210 (347)
T KOG2713|consen 134 GDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQ-HLE--LARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEK 210 (347)
T ss_pred CccceeeecchhHhhhhHhhhccccccCCccHHH-HHH--HHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhh
Confidence 4555565444344555555445555667888664 443 4444442 122 2222222222211 13 37
Q ss_pred ccccccCCccCHHHHHHhcCchHHHHHHhh--cCCCCCcccCHHH
Q 014658 166 KMSKSLGNFFTIRQITERYHPLALRHFLIS--AHYRSPLNYSVLQ 208 (421)
Q Consensus 166 KMSKSlGN~i~~~dll~~yg~D~lR~~ll~--~~~~~d~~fs~e~ 208 (421)
|||||-+|--.-..+.+ ++|.++==+-. ....+.+.|++..
T Consensus 211 KMSKSd~n~~s~I~l~D--S~~~I~~Ki~ka~TD~~~~vtYd~~~ 253 (347)
T KOG2713|consen 211 KMSKSDPNPKSRINLTD--SPDLIVKKIKKAQTDNTSGVTYDPAN 253 (347)
T ss_pred hcccCCCCCcceEEecC--CHHHHHHHHHHHhcccccceeeCCcc
Confidence 99999988332111111 23333322222 3455666676543
No 151
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=26.84 E-value=76 Score=25.42 Aligned_cols=20 Identities=10% Similarity=0.283 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHcCCeeee
Q 014658 19 MEQIKDMITQIINNDCAYVV 38 (421)
Q Consensus 19 i~~i~~~i~~L~~~g~aY~~ 38 (421)
..++...++.|++.|++|.+
T Consensus 79 ~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 79 ENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHHHHhCCeEecc
Confidence 46788889999999999987
No 152
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=26.79 E-value=58 Score=24.65 Aligned_cols=22 Identities=41% Similarity=0.813 Sum_probs=15.9
Q ss_pred HcCCeeee-CCcEEEeccCCCCcc
Q 014658 31 NNDCAYVV-EGDVFFAVEKSPNYG 53 (421)
Q Consensus 31 ~~g~aY~~-~~~vyf~v~~~~~Yg 53 (421)
++|-||.+ +|.|| ||+-.+.+|
T Consensus 15 ~nGpaYiA~~G~VY-DvS~s~~W~ 37 (81)
T COG4892 15 ENGPAYIAVNGTVY-DVSLSPSWG 37 (81)
T ss_pred CCCCeEEEECCEEE-eeccCcccC
Confidence 58999998 78776 787655443
No 153
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=24.72 E-value=1.1e+02 Score=22.36 Aligned_cols=35 Identities=20% Similarity=0.517 Sum_probs=26.0
Q ss_pred Cccccc-cccHHHHHHHHHHHHHcCCeeeeCCcEEEecc
Q 014658 10 TYQPRV-SDHMEQIKDMITQIINNDCAYVVEGDVFFAVE 47 (421)
Q Consensus 10 ~~~~r~-t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~ 47 (421)
+..|.+ =+|=+++++.|+.|.++.=.| |++||.-+
T Consensus 16 sLLPLv~Y~~Pe~Vi~iIN~lR~keGvY---G~c~~~e~ 51 (63)
T PF03295_consen 16 SLLPLVFYEDPEEVINIINELRNKEGVY---GSCYYKEN 51 (63)
T ss_pred eEEeeeeccCHHHHHHHHHHhhhccCce---eEEEEecC
Confidence 334444 468899999999999997666 77888544
No 154
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=22.14 E-value=72 Score=36.42 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=37.7
Q ss_pred CCCCCCC---CCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 2 ADLQCLP---PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 2 ~~Lnv~~---p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
++||+.- ....+--.+|...+.....+|.++|++|....-||+|..+-
T Consensus 142 ~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~ 192 (912)
T PRK05743 142 KRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCG 192 (912)
T ss_pred HHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcC
Confidence 4567621 23455556799999999999999999999999999987654
No 155
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=21.65 E-value=4.4e+02 Score=29.12 Aligned_cols=95 Identities=17% Similarity=0.250 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhccCCCCChHHH
Q 014658 251 NKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEV 330 (421)
Q Consensus 251 ~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi~~~~~~~~~ 330 (421)
..+...+.+++ ..|.++. .-. +.+++.+|.|.+-...|. ...+......|..+..+|-+.|. .
T Consensus 612 ~~l~~~l~~h~-kk~~vs~-~Gg--~~l~~Dl~~Y~~~~~~~~--------~~~v~~~F~~L~~l~nl~~v~~~-----~ 674 (710)
T PF07393_consen 612 ERLHRLLLKHL-KKFTVSS-TGG--LQLIKDLNEYQDFIRSWG--------IPSVDEKFEALKELGNLFIVDPE-----N 674 (710)
T ss_pred HHHHHHHHHHH-HhCccCc-hhH--HHHHHHHHHHHHHHHHcC--------CchHHHHHHHHHHHHhheeecHH-----H
Confidence 34455566666 5555544 222 236788899888877774 12234456777788888877543 2
Q ss_pred HHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCC
Q 014658 331 LQQLKDKALKRAELTEEDVLQLIEERAAARKNK 363 (421)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K 363 (421)
+.++... ........+++...|..|+..+..|
T Consensus 675 l~~~~~~-~~~~~~~~~~i~~fi~~R~D~~~~~ 706 (710)
T PF07393_consen 675 LKELCRE-GQLGRFSPEEIYEFIQRRSDWKSIK 706 (710)
T ss_pred HHHHHhh-ccccCCCHHHHHHHHHHhhhhhhcc
Confidence 2222211 1124456788999999998776543
No 156
>PF09275 Pertus-S4-tox: Pertussis toxin S4 subunit; InterPro: IPR015355 Members of this family of Bordetella pertussis toxins adopt a structure consisting of an OB fold, with a closed or partly opened beta-barrel in a Greek-key topology []. ; PDB: 1PTO_D 1PRT_K 1BCP_D.
Probab=21.62 E-value=1e+02 Score=23.96 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=29.3
Q ss_pred EeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeeeeCCc
Q 014658 124 HGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNE 165 (421)
Q Consensus 124 h~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~~~G~ 165 (421)
.|.|+|+.+|...-.-.++.|.+- ..+-+.++.-..++.+|.
T Consensus 50 fcfgkdlkrpgsspmevmlravfmqqrplrmflgpkqltfegk 92 (110)
T PF09275_consen 50 FCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGK 92 (110)
T ss_dssp EEEEEETTS-S--HHHHHHHHHHHHT-EEEEEEEEEEEEETTE
T ss_pred ceeccccCCCCCCcHHHHHHHHHHhhcchhhhcCcceeeecCc
Confidence 467999999998888888888764 345667777777888874
No 157
>PHA00663 hypothetical protein
Probab=21.07 E-value=91 Score=22.71 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=24.1
Q ss_pred EEecCCCe--EEEeCccchhhhcCCcchhhcCCcC
Q 014658 382 LMDMGKET--IWRPCVLVEQEQEAPPAEKEKKPAA 414 (421)
Q Consensus 382 l~D~~~Gt--~W~~~~~~~~~~~~~~~~~~~~~~~ 414 (421)
+.|.++|- +|. +|+++.|-++.|-++-|..+
T Consensus 20 vFdvpdg~kaSWf--vpA~~A~~~Pra~~apk~~~ 52 (68)
T PHA00663 20 KFDVPDGAKASWF--APASAAQHAPRAGKAPKQPA 52 (68)
T ss_pred eeecCCCCeeeeE--eehhhcccccccccCCCCCC
Confidence 55667765 565 89999999999999877544
Done!