Query 014658
Match_columns 421
No_of_seqs 299 out of 2378
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 3E-97 1E-101 756.1 25.8 358 1-393 103-461 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 5.2E-95 1.8E-99 742.6 23.5 363 1-394 130-501 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 100.0 2.9E-86 1E-90 680.9 26.2 360 1-393 100-460 (461)
4 3c8z_A Cysteinyl-tRNA syntheta 100.0 8.3E-66 2.8E-70 523.4 21.6 264 1-284 117-390 (414)
5 2csx_A Methionyl-tRNA syntheta 100.0 1.3E-47 4.5E-52 399.0 13.4 310 1-320 84-452 (497)
6 2d5b_A Methionyl-tRNA syntheta 100.0 4E-46 1.4E-50 388.1 13.0 280 1-293 82-425 (500)
7 2x1l_A Methionyl-tRNA syntheta 100.0 1.8E-45 6.1E-50 385.3 15.7 284 1-293 91-443 (524)
8 1rqg_A Methionyl-tRNA syntheta 100.0 3.4E-43 1.2E-47 379.1 18.3 330 1-334 82-519 (722)
9 3u1f_A Methionyl-tRNA syntheta 100.0 5.1E-43 1.7E-47 368.1 15.1 312 1-320 88-483 (542)
10 4dlp_A Aminoacyl-tRNA syntheta 100.0 2E-39 6.9E-44 340.1 20.6 310 1-320 104-482 (536)
11 3kfl_A Methionyl-tRNA syntheta 100.0 1E-39 3.6E-44 343.8 17.6 285 1-293 105-471 (564)
12 3h99_A Methionyl-tRNA syntheta 100.0 3.4E-38 1.2E-42 332.4 17.9 314 1-321 97-506 (560)
13 1iq0_A Arginyl-tRNA synthetase 100.0 1.7E-37 5.8E-42 328.2 5.8 299 1-324 227-589 (592)
14 1irx_A Lysyl-tRNA synthetase; 100.0 2.1E-34 7.3E-39 300.8 4.3 196 1-223 115-337 (523)
15 2zue_A Arginyl-tRNA synthetase 100.0 5.6E-33 1.9E-37 294.7 8.3 296 1-324 257-626 (629)
16 1wkb_A Leucyl-tRNA synthetase; 100.0 1E-30 3.4E-35 286.3 18.9 192 119-320 602-795 (810)
17 1wz2_A Leucyl-tRNA synthetase; 100.0 3.3E-31 1.1E-35 294.1 14.7 205 119-334 602-809 (967)
18 1gax_A Valrs, valyl-tRNA synth 100.0 2.8E-30 9.7E-35 282.2 18.2 227 98-335 462-695 (862)
19 1ile_A Ilers, isoleucyl-tRNA s 100.0 5.9E-30 2E-34 280.2 17.6 212 119-335 543-770 (821)
20 1ffy_A Isoleucyl-tRNA syntheta 100.0 7E-29 2.4E-33 273.2 16.2 212 119-334 547-771 (917)
21 3aii_A Glutamyl-tRNA synthetas 99.9 3.1E-28 1.1E-32 250.7 4.7 197 1-215 155-395 (553)
22 1f7u_A Arginyl-tRNA synthetase 99.9 2.3E-27 7.9E-32 250.1 10.4 273 1-324 281-604 (607)
23 4arc_A Leucine--tRNA ligase; l 99.9 4.5E-26 1.5E-30 248.5 16.2 213 93-321 513-783 (880)
24 1qtq_A GLNRS, protein (glutami 99.9 3.7E-27 1.2E-31 242.7 7.0 197 1-214 85-332 (553)
25 3fnr_A Arginyl-tRNA synthetase 99.9 2.2E-24 7.4E-29 220.7 19.4 278 2-324 156-451 (464)
26 2hz7_A Glutaminyl-tRNA synthet 99.9 6.1E-26 2.1E-30 242.9 7.7 196 1-213 125-371 (851)
27 2v0c_A Aminoacyl-tRNA syntheta 99.9 8.8E-25 3E-29 239.7 15.8 230 119-365 530-833 (878)
28 2cfo_A Glutamyl-tRNA synthetas 99.9 3.5E-22 1.2E-26 205.3 10.6 185 1-211 60-296 (492)
29 1nzj_A Hypothetical protein YA 99.8 1E-20 3.5E-25 183.0 6.5 151 1-174 64-236 (298)
30 2o5r_A Glutamyl-tRNA synthetas 99.3 3.4E-11 1.2E-15 123.6 14.7 156 13-196 92-292 (481)
31 1j09_A Glutamyl-tRNA synthetas 99.2 5.4E-11 1.8E-15 121.6 13.1 186 2-211 61-291 (468)
32 3afh_A Glutamyl-tRNA synthetas 99.2 6.8E-11 2.3E-15 121.3 13.4 174 2-209 85-300 (488)
33 3al0_C Glutamyl-tRNA(Gln) amid 99.2 4.9E-11 1.7E-15 125.1 12.4 163 2-198 189-391 (592)
34 4g6z_A Glutamate-tRNA ligase; 98.7 1.4E-07 4.8E-12 96.4 13.7 183 1-211 84-311 (490)
35 2ja2_A Glutamyl-tRNA synthetas 98.4 2.8E-06 9.6E-11 87.2 14.1 157 12-196 84-287 (498)
36 2cyb_A Tyrosyl-tRNA synthetase 97.9 7.8E-06 2.7E-10 79.7 4.9 78 111-196 161-239 (323)
37 4gri_A Glutamate--tRNA ligase; 97.7 0.00067 2.3E-08 70.0 15.1 103 100-212 212-322 (512)
38 2yxn_A Tyrosyl-tRNA synthetase 97.2 0.00014 4.8E-09 70.7 3.4 80 112-196 179-263 (322)
39 1h3f_A Tyrosyl-tRNA synthetase 97.2 0.00028 9.4E-09 71.2 4.7 77 112-196 179-257 (432)
40 2pid_A Tyrosyl-tRNA synthetase 97.1 0.00022 7.7E-09 70.2 3.3 80 112-196 198-282 (356)
41 1jil_A Tyrrs, tyrosyl-tRNA syn 97.1 0.00034 1.2E-08 70.3 4.6 79 112-195 174-258 (420)
42 2ts1_A Tyrosyl-tRNA synthetase 97.1 0.0003 1E-08 70.7 4.0 79 112-195 173-257 (419)
43 2g36_A Tryptophanyl-tRNA synth 97.0 0.00039 1.3E-08 68.0 4.1 80 111-196 144-230 (340)
44 2jan_A Tyrosyl-tRNA synthetase 97.0 0.00042 1.4E-08 69.8 4.2 80 112-196 175-260 (432)
45 1y42_X Tyrosyl-tRNA synthetase 96.8 0.00058 2E-08 68.1 3.5 74 120-196 232-321 (392)
46 1n3l_A Tyrosyl-tRNA synthetase 96.8 0.0006 2.1E-08 67.6 3.2 76 112-195 170-247 (372)
47 2dlc_X Tyrosyl-tRNA synthetase 96.7 0.00073 2.5E-08 67.5 3.0 77 111-195 173-252 (394)
48 3tzl_A Tryptophanyl-tRNA synth 96.4 0.00066 2.3E-08 65.9 0.9 79 111-195 130-216 (322)
49 2cya_A Tyrosyl-tRNA synthetase 96.2 0.0024 8E-08 63.1 3.4 77 111-195 168-263 (364)
50 2zp1_A Tyrosyl-tRNA synthetase 96.1 0.0036 1.2E-07 60.5 4.0 73 111-195 154-228 (314)
51 3vgj_A Tyrosyl-tRNA synthetase 96.0 0.0033 1.1E-07 62.2 3.6 78 111-195 191-272 (373)
52 1yi8_B Tryptophanyl-tRNA synth 96.0 0.0018 6.2E-08 63.6 1.4 78 112-195 154-239 (351)
53 2el7_A Tryptophanyl-tRNA synth 95.9 0.0031 1.1E-07 61.6 2.7 78 112-196 133-220 (337)
54 3i05_A Tryptophanyl-tRNA synth 95.9 0.0034 1.2E-07 62.4 2.8 56 121-179 225-283 (395)
55 3hzr_A Tryptophanyl-tRNA synth 95.6 0.0097 3.3E-07 59.0 4.9 72 116-195 219-294 (386)
56 1i6k_A TRPRS, tryptophanyl-tRN 95.6 0.0048 1.6E-07 60.0 2.5 68 111-179 128-208 (328)
57 2cyc_A Tyrosyl-tRNA synthetase 95.5 0.0053 1.8E-07 60.8 2.6 79 111-195 171-276 (375)
58 3tze_A Tryptophanyl-tRNA synth 95.5 0.0098 3.3E-07 59.3 4.5 61 116-179 239-303 (406)
59 2j5b_A Tyrosyl-tRNA synthetase 95.4 0.0082 2.8E-07 58.8 3.4 66 111-179 174-246 (348)
60 2yy5_A Tryptophanyl-tRNA synth 95.3 0.008 2.7E-07 58.9 3.2 67 111-179 138-218 (348)
61 3jxe_A Tryptophanyl-tRNA synth 95.2 0.012 4.2E-07 58.4 4.2 64 112-178 198-266 (392)
62 2ip1_A Tryptophanyl-tRNA synth 95.0 0.014 4.8E-07 58.8 3.9 58 119-179 248-309 (432)
63 3p0j_A Tyrosyl-tRNA synthetase 94.6 0.016 5.5E-07 61.7 3.4 66 110-177 173-242 (690)
64 3hv0_A Tryptophanyl-tRNA synth 94.5 0.016 5.4E-07 57.6 2.8 55 122-179 222-280 (393)
65 1r6u_A Tryptophanyl-tRNA synth 93.8 0.042 1.4E-06 55.3 4.2 57 120-179 256-316 (437)
66 3prh_A Tryptophanyl-tRNA synth 93.5 0.022 7.4E-07 56.5 1.5 69 110-179 161-242 (388)
67 1r6t_A Tryptophanyl-tRNA synth 93.3 0.054 1.8E-06 55.2 4.1 56 121-179 304-363 (477)
68 3foc_A Tryptophanyl-tRNA synth 92.5 0.048 1.6E-06 55.0 2.4 52 123-177 290-345 (451)
69 2v0c_A Aminoacyl-tRNA syntheta 92.5 0.057 1.9E-06 59.3 3.1 49 1-49 112-163 (878)
70 3sz3_A Tryptophanyl-tRNA synth 92.5 0.038 1.3E-06 53.8 1.6 68 111-179 134-217 (341)
71 3n9i_A Tryptophanyl-tRNA synth 91.8 0.046 1.6E-06 53.3 1.3 68 111-179 143-223 (346)
72 3a04_A Tryptophanyl-tRNA synth 88.1 0.43 1.5E-05 46.9 4.7 59 118-178 206-269 (372)
73 4arc_A Leucine--tRNA ligase; l 84.3 0.32 1.1E-05 53.2 1.7 49 1-49 132-183 (880)
74 1wkb_A Leucyl-tRNA synthetase; 54.0 6.7 0.00023 42.4 3.1 47 2-49 138-190 (810)
75 1ile_A Ilers, isoleucyl-tRNA s 40.8 13 0.00043 40.3 2.7 34 16-49 152-185 (821)
76 1gax_A Valrs, valyl-tRNA synth 40.6 16 0.00054 39.8 3.4 48 2-49 130-180 (862)
77 1wj5_A Hypothetical protein (r 37.1 25 0.00084 28.1 3.1 37 14-50 71-111 (120)
78 1ffy_A Isoleucyl-tRNA syntheta 37.1 18 0.00063 39.6 3.3 48 2-49 140-190 (917)
79 1bcp_D Pertussis toxin; ADP-ri 21.4 63 0.0022 24.0 2.7 42 124-165 50-92 (110)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=3e-97 Score=756.05 Aligned_cols=358 Identities=42% Similarity=0.708 Sum_probs=258.7
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee-CCcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~-~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||.+|+.+||+|+||+.|+++|++|++||+||++ +|+|||||++|+.||+||+++++++..|+|++.+.+|+||.
T Consensus 103 ~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~~~~~~g~r~~~~~~K~~p~ 182 (462)
T 3tqo_A 103 EKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPL 182 (462)
T ss_dssp HHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSCC------------CCSSTT
T ss_pred HHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccccccccCCChHHhhccCccccccccCCcc
Confidence 56899999999999999999999999999999999999 79999999999999999999999999999999889999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeee
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGH 159 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~ 159 (421)
||+|||++++|||+|+||||.||||||||||||+.++||.++|||+||.||+||||+|++||++|+++.||+++|+|+|+
T Consensus 183 DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~p~~~~w~H~g~ 262 (462)
T 3tqo_A 183 DFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEKPFVKLWMHAGL 262 (462)
T ss_dssp CEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSSCCEEEEEEECC
T ss_pred ccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCCCcceEEEEccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 014658 160 VTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT 239 (421)
Q Consensus 160 l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 239 (421)
|+++|+|||||+||||+|.|++++||+|++|||+|+++|+++++||++.+.++.+.+.+|++++.++. ... .
T Consensus 263 v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl~~~~~~~~----~~~----~ 334 (462)
T 3tqo_A 263 LEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFYLALRGLP----VVN----H 334 (462)
T ss_dssp EEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHTTCC----C-------
T ss_pred EecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHHHHHHHHhh----hcc----c
Confidence 99999999999999999999999999999999999999999999999999999999999988876431 100 0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHh
Q 014658 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 319 (421)
Q Consensus 240 ~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~il 319 (421)
..+..+.+.|.++|+||||++.|++. |+++++.+|.+++... ...+..+...+..+..+|
T Consensus 335 --------~~~~~~~~~~~~a~~dD~nt~~a~~~-l~~~~~~~n~~~~~~~-----------~~~~~~~~~~~~~~~~vl 394 (462)
T 3tqo_A 335 --------EKTSSYTDRFYEAMDDDFNTPIAFAL-LFEMVREINRFRDNNQ-----------IEKAAVLAAELKCLGNIF 394 (462)
T ss_dssp -----------CHHHHHHHHHHTBTCCHHHHHHH-HHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHGGG
T ss_pred --------hhHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHhhhhcccc-----------HHHHHHHHHHHHHHHHhc
Confidence 01345678899999999999999999 9999999999876432 112234456788889999
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 320 GLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 320 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
||... .....++. . ...+.+++|+.||++|++||++|||++||+||++|.++||.|+|||+||+|++
T Consensus 395 g~~~~-~~~~~~~~---~---~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi~l~D~~~g~~w~~ 461 (462)
T 3tqo_A 395 GLLQY-SPEQFLQG---A---KKEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDGTSWRQ 461 (462)
T ss_dssp TCSCS-CHHHHC--------------------------------------------------------------
T ss_pred CCCcc-chhhhhhc---c---ccccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEEcCCCcEEEe
Confidence 99764 22211110 0 01223467999999999999999999999999999999999999999999986
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=5.2e-95 Score=742.61 Aligned_cols=363 Identities=29% Similarity=0.454 Sum_probs=271.5
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccc-hhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL-ENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~-~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||.+|+.+|++|+||++|+++|++|++||+||+++|+|||||++|+.||+||++++ +++..|+|+++++.|+||.
T Consensus 130 ~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~ 209 (501)
T 3sp1_A 130 CRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKT 209 (501)
T ss_dssp HHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGGCTTTTTTTC-----------------CCSSTT
T ss_pred HHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCccCCccccCCCChhhhhccCCccCcccccCCch
Confidence 568999999999999999999999999999999999999999999999999999999999 9999999998888999999
Q ss_pred ccccccc--c-cCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEe
Q 014658 80 DFALWKA--A-KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 156 (421)
Q Consensus 80 DF~LWk~--~-~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h 156 (421)
||+|||+ . ++++|+|+||||.||||||||||+|+.+|||.++|||+||+||+||||+|||||++|++++||+++|+|
T Consensus 210 Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLifpHheneiAqs~a~~g~~~~~~w~H 289 (501)
T 3sp1_A 210 DFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVH 289 (501)
T ss_dssp CEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEE
T ss_pred hhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeeccccccchHHHHHHHHHHccCCCCCeEEEE
Confidence 9999998 3 468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHH----HHHHHHHHHHHHHhcC
Q 014658 157 NGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDA----VFYIYQTLQDCEVALS 231 (421)
Q Consensus 157 ~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~----l~~l~~~l~~~~~~~~ 231 (421)
+|||+++|+|||||+||||+|.|++++ ||+|++||||++.+|++|++||++.|.++.+. +.+|++.+..+.....
T Consensus 290 ~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~ 369 (501)
T 3sp1_A 290 GEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDL 369 (501)
T ss_dssp ECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred eeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCCccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999 99999999999999999999999999999999 7777776654321110
Q ss_pred CcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHH
Q 014658 232 PFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENE 311 (421)
Q Consensus 232 ~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~ 311 (421)
........ ..+ ...+..+.+.|.++|+||||++.|++. |+++++.+| + . . .. +...
T Consensus 370 ~~~~~~~~-~~~---~~~~~~~~~~f~~am~dDlnt~~al~~-l~~~~~~~~--~---~----~-------~~---~~~~ 425 (501)
T 3sp1_A 370 NTLNKDLK-NFG---FSVEKEYYDSFVEKISFDLNVAQGLAL-LWEIIKSDN--L---S----F-------VS---KLRL 425 (501)
T ss_dssp HHHHSCTT-SCS---SHHHHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHCSS--S---C----H-------HH---HHHH
T ss_pred cccccccc-chh---hhhHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHhc--c---C----H-------HH---HHHH
Confidence 00000000 011 123556788999999999999999999 999999875 1 1 0 01 1245
Q ss_pred HHHHHhHhccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEE
Q 014658 312 VKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIW 391 (421)
Q Consensus 312 l~~~l~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W 391 (421)
+..++.+|||.+. ... +... .......++.|+.||++|++||++|||++||+||++|.++||.|+|+|+||+|
T Consensus 426 ~~~~~~vlGl~~~---~~~---~~~~-~~~~~~~~~~i~~li~~R~~ar~~kd~~~aD~iRd~L~~~Gi~l~D~~~g~~w 498 (501)
T 3sp1_A 426 AFIFDEIMSLNLR---EEI---LKNL-QNHDVVIDENMKALIEERRIAKCEKNFKRADEIRDFFAKKGFVLVDTKEGTKV 498 (501)
T ss_dssp HHHHHHHHCCCHH---HHH---HHHH-TTSCCCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHcCCCcc---cch---hhcc-cccchhhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCcEEEEcCCCcEE
Confidence 6677899999642 111 1000 00112345789999999999999999999999999999999999999999999
Q ss_pred EeC
Q 014658 392 RPC 394 (421)
Q Consensus 392 ~~~ 394 (421)
++.
T Consensus 499 ~~~ 501 (501)
T 3sp1_A 499 KRG 501 (501)
T ss_dssp ---
T ss_pred EeC
Confidence 863
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=2.9e-86 Score=680.90 Aligned_cols=360 Identities=43% Similarity=0.715 Sum_probs=255.1
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee-CCcEEEeccCCCCccccccccchhhhCCCCccccccccCCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 79 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~-~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~ 79 (421)
|++|||.+|+.+||+|+|++.|+++|++|+++|+||+. +|+|||||++|+.||+||++.++++..|++++.+..|+||.
T Consensus 100 ~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~~l~~g~rv~~~~~k~~p~ 179 (461)
T 1li5_A 100 FDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPM 179 (461)
T ss_dssp HHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC----------------CCSTT
T ss_pred HHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccccccccccCCCHHHhhcCCcccchhcccCcc
Confidence 46899999999999999999999999999999999999 99999999999999999999999999999998888999999
Q ss_pred cccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeee
Q 014658 80 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGH 159 (421)
Q Consensus 80 DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~ 159 (421)
||+|||.+++|+|.|+||||.||||||||||+|+.+++|.++|||+||+||+||||+|||||++|+++.||+++|+|+||
T Consensus 180 Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~~~~~~~~h~g~ 259 (461)
T 1li5_A 180 DFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGM 259 (461)
T ss_dssp CEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSCCEEEECCBCC
T ss_pred ceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHHHHHhcCCCCCcEEEEeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999977899999999999
Q ss_pred eeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Q 014658 160 VTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT 239 (421)
Q Consensus 160 l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~ 239 (421)
|+++|+|||||+||||+|.|++++||+|++|||+|+++|++|++||++.+.++.+.+.+++|.+.++ .. ..+
T Consensus 260 v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n~~~~~----~~----~~~ 331 (461)
T 1li5_A 260 VMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGT----DK----TVA 331 (461)
T ss_dssp EEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHHHHTTC----CT----TSC
T ss_pred EEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh----hc----CCC
Confidence 9999999999999999999999999999999999999999999999999999998888888877543 11 001
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHh
Q 014658 240 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 319 (421)
Q Consensus 240 ~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~il 319 (421)
+ + .+..+.+.|.++|+|+|+++.|++. |+++++.+|+|++. + . ..+..+...+..++.+|
T Consensus 332 -~-d-----~l~~~~~~~~~am~dd~n~~~Al~~-l~~l~~~~N~~~~~--~---~-------~~~~~~~~~~~~~~~~l 391 (461)
T 1li5_A 332 -P-A-----GGEAFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAE--D---M-------AAANAMASHLRKLSAVL 391 (461)
T ss_dssp -C-C-----SCHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHH--C---H-------HHHHHHHHHHHHHHTTT
T ss_pred -H-H-----HHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHhc--c---H-------HHHHHHHHHHHHHHHHc
Confidence 1 2 3566788899999999999999999 99999999999965 2 1 13444567788899999
Q ss_pred ccCCCCChHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhcCCChHHHHHHHHHhHhcCcEEEecCCCeEEEe
Q 014658 320 GLLPPGAYSEVLQQLKDKALKRAELTEEDVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRP 393 (421)
Q Consensus 320 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~f~~aD~IRd~L~~~GI~l~D~~~Gt~W~~ 393 (421)
||... .....++ .... ...+..++++.||++|++||++|||++||+||++|.++||.|+|+|+||+|++
T Consensus 392 G~~~~-~~~~~~~---~~~~-~~~~~~~~~~~l~~~r~~ar~~k~~~~aD~iR~~l~~~gi~~~d~~~g~~w~~ 460 (461)
T 1li5_A 392 GLLEQ-EPEAFLQ---SGAQ-ADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRR 460 (461)
T ss_dssp TCSCS-CHHHHC--------------------------------------------------------------
T ss_pred CCCcc-Chhhhhh---cccc-cccccHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHCCCEEEEcCCCcEEEe
Confidence 99542 1111110 0000 00001145889999999999999999999999999999999999999999985
No 4
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=8.3e-66 Score=523.41 Aligned_cols=264 Identities=32% Similarity=0.533 Sum_probs=227.5
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeC----CcEEEeccCCCCccccccccchhhhCC--CC-ccc-c
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE----GDVFFAVEKSPNYGRLSGQRLENNRAG--ER-VAV-D 72 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~----~~vyf~v~~~~~Yg~ls~~~~~~~~~g--~~-v~~-~ 72 (421)
|++|||.+|+.++|+|+|++.|+++|++|+++|+||+.+ |+|||++++|++||+|++++.+++..+ .+ ++. +
T Consensus 117 ~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 196 (414)
T 3c8z_A 117 MAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDR 196 (414)
T ss_dssp HHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTC
T ss_pred HHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhHhhcCCCHHHHHHHHhhccccccc
Confidence 468999989999999999999999999999999999998 999999999999999999888776543 22 333 4
Q ss_pred ccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCC
Q 014658 73 SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNV 151 (421)
Q Consensus 73 ~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~ 151 (421)
..|++|.||+|||...||+|.|+||||.|||||||||++|+.++||.++|||+||+||+||||+||+||++|+++. ||+
T Consensus 197 ~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~ 276 (414)
T 3c8z_A 197 PGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFA 276 (414)
T ss_dssp TTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSE
T ss_pred cccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCCCCcC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999765 899
Q ss_pred cEEEeeeeeeeCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014658 152 SYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVAL 230 (421)
Q Consensus 152 ~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~ 230 (421)
++|+|+|||+++|+|||||+||+|+|.+++++ ||+|++||||++.+|++|++||++.+.++.+.+.+++|.+.++
T Consensus 277 ~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~~l~~~~~~l~~l~n~~~~~---- 352 (414)
T 3c8z_A 277 RHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALP---- 352 (414)
T ss_dssp EEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHHHHHHHHHHHHHHHHHHTSS----
T ss_pred eEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc----
Confidence 99999999999999999999999999999999 9999999999999999999999999999999888888876432
Q ss_pred CCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Q 014658 231 SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 284 (421)
Q Consensus 231 ~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~ 284 (421)
. . + .+..+.++|.++|+|+|++++|++. |+++++.+|+
T Consensus 353 ~----~----~-------~~~~~~~~v~~a~~d~~~~~~Al~~-i~~~~~~~n~ 390 (414)
T 3c8z_A 353 E----A----P-------DATDVIARVRQYLADDLDTPKALAA-LDGWCTDALS 390 (414)
T ss_dssp C----B----S-------CCHHHHHHHHHHHHBTCCHHHHHHH-HHHHHHHHHH
T ss_pred c----c----h-------hHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHh
Confidence 1 0 0 1246678899999889999999999 9999999998
No 5
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=1.3e-47 Score=398.98 Aligned_cols=310 Identities=15% Similarity=0.177 Sum_probs=214.3
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEe--ccCCCCcccc--------ccccchhhhCCC-
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFA--VEKSPNYGRL--------SGQRLENNRAGE- 67 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~--v~~~~~Yg~l--------s~~~~~~~~~g~- 67 (421)
|++|||. ++.++|+|+ |++.+++++++|.++|+||.....|+|| ...+..++++ ++..++....++
T Consensus 84 ~~~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~w 162 (497)
T 2csx_A 84 WEFLKIE-YTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSY 162 (497)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCEEE
T ss_pred HHHhCCc-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCce
Confidence 4679994 789999999 9999999999999999999986555554 5556666666 333332221110
Q ss_pred Ccccc--------ccccCCCcccc----------cccccCCC-----CcccCCCCCCCC---CCchh---------hHHH
Q 014658 68 RVAVD--------SRKRNPADFAL----------WKAAKAGE-----PSWDSPWGPGRP---GWHIE---------CSAM 112 (421)
Q Consensus 68 ~v~~~--------~~K~~p~DF~L----------Wk~~~~~~-----~~w~spwg~grP---gWhie---------csam 112 (421)
.+.++ ..+++| +|.. |-.....+ |.|++|||.++| |||++ ||+|
T Consensus 163 f~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~ 241 (497)
T 2csx_A 163 FFRLSKYQDKLLELYEKNP-EFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISAL 241 (497)
T ss_dssp EECTTSSHHHHHHHHHHCT-TSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTT
T ss_pred EEEcHHHHHHHHHHHHhCC-CeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcccC
Confidence 00000 011122 1111 21111122 568999999999 89998 9998
Q ss_pred HH---hhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHH
Q 014658 113 SA---HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLAL 189 (421)
Q Consensus 113 ~~---~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~l 189 (421)
.. +++ |+|||++|+||+||||++|+|++++++.++|.++ +|||||+++|+|||||+||+|+|.|++++||+|++
T Consensus 242 ~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~-~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~Dal 318 (497)
T 2csx_A 242 EDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSLGYELPKKV-FAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLDEV 318 (497)
T ss_dssp TTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCE-EEECCEESSSSBCCTTTTCCCCHHHHHHHHCHHHH
T ss_pred CCcchhhC--CceEEEeecchhHhHHHHHHHHHHHcCCCCCcEE-EECcEEEeCCceeCCcCCCCCCHHHHHHHCCcHHH
Confidence 66 566 8999999999999999999999999865555555 77899999999999999999999999999999999
Q ss_pred HHHHhh-cCCCCCcccCHHHHHHHHHH-----HHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q 014658 190 RHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSD 263 (421)
Q Consensus 190 R~~ll~-~~~~~d~~fs~e~l~~~~~~-----l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~d 263 (421)
|||+++ +++++|++||++.+.++.+. ++|+++++..+...... +..+...|.+++..+..+.+.+.++| +
T Consensus 319 R~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~---~~~~~~~d~~l~~~l~~~~~~v~~~~-~ 394 (497)
T 2csx_A 319 RYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLG---GEVSGARDEEYAKIAQESIKNYENYM-E 394 (497)
T ss_dssp HHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHST---TCBCCCCCTTHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHHHHHHHHHHH-H
Confidence 999999 69999999999999887643 34555544332211111 11113467899999999999999999 9
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHhhhcccCchh--hhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 264 DLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ--QQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 264 d~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~--~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
+|+++.|++. |++|++.+|+|++..+||.... ........+..+..+++.++.+|.
T Consensus 395 ~~~~~~a~~~-l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~ 452 (497)
T 2csx_A 395 KVNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLY 452 (497)
T ss_dssp TTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 9999999999999999994111 111122334444555555555555
No 6
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=4e-46 Score=388.14 Aligned_cols=280 Identities=19% Similarity=0.165 Sum_probs=211.5
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEe--ccCCCCcccc-------ccccchhhhCCC--
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFA--VEKSPNYGRL-------SGQRLENNRAGE-- 67 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~--v~~~~~Yg~l-------s~~~~~~~~~g~-- 67 (421)
|++|||. +|.++|+|+ |++.+++++++|.++|++|...+.++|| +..+..+++| ++..++....++
T Consensus 82 ~~~lgi~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf 160 (500)
T 2d5b_A 82 WDLLGIA-YDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYF 160 (500)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEE
T ss_pred HHHhCCc-CCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceE
Confidence 4679994 799999999 9999999999999999999986556555 4445556655 232222111110
Q ss_pred -Ccc------ccccccCCCccccccccc--------CC--C-----CcccCCCCCCCC---------------------C
Q 014658 68 -RVA------VDSRKRNPADFALWKAAK--------AG--E-----PSWDSPWGPGRP---------------------G 104 (421)
Q Consensus 68 -~v~------~~~~K~~p~DF~LWk~~~--------~~--~-----~~w~spwg~grP---------------------g 104 (421)
++. ++..+++| ||..|+..+ ++ + |.|+++||.++| |
T Consensus 161 ~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g 239 (500)
T 2d5b_A 161 FRMEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALD 239 (500)
T ss_dssp ECGGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTT
T ss_pred EEcHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHHcC
Confidence 000 01123444 666654321 22 2 446889999999 8
Q ss_pred CchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeee-CCcccccccCCccCHHHHHHh
Q 014658 105 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER 183 (421)
Q Consensus 105 Whiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~ 183 (421)
||++|+ ..+++ |.|||++|+||+||||++|+|++++++.++| +.|+|||||+. +|+|||||+||+|+|.|++++
T Consensus 240 ~~~~~~--~~~~~--p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~-~~v~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~ 314 (500)
T 2d5b_A 240 YPEGEA--YRTFW--PHAWHLIGKDILKPHAVFWPTMLKAAGIPMY-RHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEK 314 (500)
T ss_dssp TTTCHH--HHHHG--GGEEEEEEGGGHHHHHTHHHHHHHHHTCCCC-SEEEEECCEECTTSSCCCTTTTCCCCHHHHHHH
T ss_pred CCCCch--HHHcC--CCeEEEEeechhhhHHHHHHHHHHHcCCCCC-cEEEECceEEeCCCCcccccCCCCCCHHHHHHh
Confidence 999997 55666 6799999999999999999999999855454 55578899999 999999999999999999999
Q ss_pred cCchHHHHHHhh-cCCCCCcccCHHHHHHHHHH-----HHHHHHHHHHH-HHhcCCcccCCCCCCCChHHHHHHHHHHHH
Q 014658 184 YHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTLQDC-EVALSPFQEHGKTARINPAAEDCINKLRDE 256 (421)
Q Consensus 184 yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~-----l~~l~~~l~~~-~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~ 256 (421)
||+|++|||+++ +++++|++||++.+.++.+. ++|+.+++..+ ....... .+...+++++..+.++.+.
T Consensus 315 ~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~~ 390 (500)
T 2d5b_A 315 YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGR----IPEPVAGEELAEGTGLAGR 390 (500)
T ss_dssp HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTB----CCCCCCCGGGGGGGGHHHH
T ss_pred cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCchhHHHHHHHHHHHHHH
Confidence 999999999998 69999999999999887642 34544443221 1111111 1111246788888999999
Q ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 257 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 257 v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
+.++| ++|+++.|++. |++|++.+|.|++..+||.
T Consensus 391 v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~ 425 (500)
T 2d5b_A 391 LRPLV-RELKFHVALEE-AMAYVKALNRYINEKKPWE 425 (500)
T ss_dssp HHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchh
Confidence 99999 99999999999 9999999999999999995
No 7
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=1.8e-45 Score=385.29 Aligned_cols=284 Identities=19% Similarity=0.196 Sum_probs=219.4
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--CCCcccc------------ccccchh--
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--SPNYGRL------------SGQRLEN-- 62 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--~~~Yg~l------------s~~~~~~-- 62 (421)
|++|||. ++.++|+|+ |++.+++++++|.++|++|..++.||||+.+ |..|+++ ++..++.
T Consensus 91 ~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~ 169 (524)
T 2x1l_A 91 QEKLNIS-FDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTE 169 (524)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEE
T ss_pred HHHcCCc-CCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEe
Confidence 4679995 799999999 9999999999999999999999999999987 5556553 3322210
Q ss_pred ------------------hhCC-CCcccccc--------ccCCCcccc------cccccCCCCc-----c-cCCC----C
Q 014658 63 ------------------NRAG-ERVAVDSR--------KRNPADFAL------WKAAKAGEPS-----W-DSPW----G 99 (421)
Q Consensus 63 ------------------~~~g-~~v~~~~~--------K~~p~DF~L------Wk~~~~~~~~-----w-~spw----g 99 (421)
+..+ ..+..+.. +++..|+++ |...-|+++. | +|+| |
T Consensus 170 ~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~ 249 (524)
T 2x1l_A 170 EQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTG 249 (524)
T ss_dssp EEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHT
T ss_pred cCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHH
Confidence 0001 00101111 234556666 5443343322 4 7777 5
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHH
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~d 179 (421)
.|+|+ +|+++..+++ |+|||++|+||+||||++|+|++++++.++|.++|+| |||+.+|+|||||+||+|+|.|
T Consensus 250 ~g~p~---~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~h-G~v~~~G~KMSKS~GN~v~p~d 323 (524)
T 2x1l_A 250 VGFPD---TESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAH-GWLLNRGEKMSKSIGNVVDPVN 323 (524)
T ss_dssp TTTTC---TTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEE-CCEEECSCSEETTTEESSCHHH
T ss_pred cCCCC---CchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEEC-cEEEeCCcccCCcCCCCCCHHH
Confidence 66666 7888888887 7999999999999999999999999877778889777 9999999999999999999999
Q ss_pred HHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHH-----HHHHHHHHHHH-HHhcCCccc-CCCCCCCChHHHHHHH
Q 014658 180 ITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTLQDC-EVALSPFQE-HGKTARINPAAEDCIN 251 (421)
Q Consensus 180 ll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~-----l~~l~~~l~~~-~~~~~~~~~-~~~~~~~d~~l~~~l~ 251 (421)
++++||+|++|||+++ +++++|++||++.+.++.+. ++|+.+++..+ ...+..... .......|++++..+.
T Consensus 324 ~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~~~l~ 403 (524)
T 2x1l_A 324 LVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAAD 403 (524)
T ss_dssp HHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHHHHHH
Confidence 9999999999999999 69999999999999987654 55665554322 222221111 0111234678889999
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 252 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 252 ~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
.+.+.+.++| ++|+++.|++. |++|++.+|.|++..+||.
T Consensus 404 ~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~ 443 (524)
T 2x1l_A 404 ALLERVREHF-DVPAMHLALEA-IWSVLGAANRYFSAQEPWV 443 (524)
T ss_dssp THHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhcCChh
Confidence 9999999999 99999999999 9999999999999999984
No 8
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=3.4e-43 Score=379.13 Aligned_cols=330 Identities=15% Similarity=0.097 Sum_probs=237.4
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC------------------CCccccc---c
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------------PNYGRLS---G 57 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~------------------~~Yg~ls---~ 57 (421)
|++|||. +|.++|+|+ |+..++.++++|.++|++|...+.||||+.+. ..||.+. +
T Consensus 82 ~~~lgis-~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G 160 (722)
T 1rqg_A 82 FQRAKIS-FDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCG 160 (722)
T ss_dssp HHHHTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSC
T ss_pred HHHhCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhcc
Confidence 3578995 899999987 99999999999999999999999999999875 2466542 1
Q ss_pred ccc--hhh------hCCCCcccccccc----------CCCccc---ccccc---------cCCCCcc----cCCCCCCCC
Q 014658 58 QRL--ENN------RAGERVAVDSRKR----------NPADFA---LWKAA---------KAGEPSW----DSPWGPGRP 103 (421)
Q Consensus 58 ~~~--~~~------~~g~~v~~~~~K~----------~p~DF~---LWk~~---------~~~~~~w----~spwg~grP 103 (421)
..+ .++ ..|++++....+. ...|+. .|... +.|.+-| +.+||.++|
T Consensus 161 ~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP 240 (722)
T 1rqg_A 161 RPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVP 240 (722)
T ss_dssp CCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCS
T ss_pred cccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccC
Confidence 211 112 2455544322111 111111 26554 4566667 899999999
Q ss_pred ----CCc-----------hhhHHHHH-------------hhcC--C--CceEEeecccCcCcchHHHHHHHHhcc-----
Q 014658 104 ----GWH-----------IECSAMSA-------------HYLS--S--KFDIHGGGIDLIFPHHENEIAQSCAAC----- 146 (421)
Q Consensus 104 ----gWh-----------iecsam~~-------------~~lg--~--~~Dih~gG~Dli~pH~~~~~a~~~a~~----- 146 (421)
||| |+|.+++. +|++ . ..++|++|+||+|||+.+|||++++++
T Consensus 241 ~~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~ 320 (722)
T 1rqg_A 241 LDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDE 320 (722)
T ss_dssp CCCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSS
T ss_pred ccccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCccc
Confidence 688 77766553 3554 2 245999999999999999999999986
Q ss_pred ----CCCCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHH-----H
Q 014658 147 ----QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----V 216 (421)
Q Consensus 147 ----~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~-----l 216 (421)
+.++++.|+|||||+++|+|||||+||||+|.+++++||+|++||||++. ++++|++||++.+.++.|. +
T Consensus 321 d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l 400 (722)
T 1rqg_A 321 EVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNL 400 (722)
T ss_dssp SCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTH
T ss_pred ccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 32333556888999999999999999999999999999999999999996 9999999999999887652 5
Q ss_pred HHHHHHHH-HHHHhcCCcccC-CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCc
Q 014658 217 FYIYQTLQ-DCEVALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 294 (421)
Q Consensus 217 ~~l~~~l~-~~~~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~ 294 (421)
+|+.+++. ++...+....+. ......|++++..+..+...+.++| ++|+++.|++. |++|++.+|+|++..+||..
T Consensus 401 ~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~~A~~~-i~~~~~~~n~Yi~~~kpw~~ 478 (722)
T 1rqg_A 401 GNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKR-VMSLASFGNRYFDHKQPWKT 478 (722)
T ss_dssp HHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhh
Confidence 66665543 233333221110 1112346789999999999999999 99999999999 99999999999999999952
Q ss_pred hhhh-hhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 295 KQQQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 295 ~~~~-~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
.+.. .....+++.+++.++.++.+|. |+|. ..+++++++
T Consensus 479 ~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~-~aeei~~~L 519 (722)
T 1rqg_A 479 AKEDKVRTGTTVNISLQIVKALGILLEPFLPD-ASEKIWHLL 519 (722)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHc
Confidence 1111 1122344444555555555555 3443 344555544
No 9
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=5.1e-43 Score=368.15 Aligned_cols=312 Identities=17% Similarity=0.160 Sum_probs=217.8
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCC------------CccccccccchhhhCC
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP------------NYGRLSGQRLENNRAG 66 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~------------~Yg~ls~~~~~~~~~g 66 (421)
|++|||. +|.+.|+++ |+..+++++.+|.++|++|...+.||||+++-. .+|...+. ....|
T Consensus 88 ~~~lgi~-~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~---~~~sg 163 (542)
T 3u1f_A 88 FEQMDYS-IDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKV---SLESG 163 (542)
T ss_dssp HHHHTCC-CSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEE---ETTTC
T ss_pred HHHhCCc-cCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccc---cCCCC
Confidence 4678996 688888874 999999999999999999999999999997643 23332111 12345
Q ss_pred CCcccccc------------------ccCCCcccccccccC--------CC--------CcccCCCCCCCCC--------
Q 014658 67 ERVAVDSR------------------KRNPADFALWKAAKA--------GE--------PSWDSPWGPGRPG-------- 104 (421)
Q Consensus 67 ~~v~~~~~------------------K~~p~DF~LWk~~~~--------~~--------~~w~spwg~grPg-------- 104 (421)
.+++.... +.++ ++..|...+. +. .+|..+||...||
T Consensus 164 ~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~v 242 (542)
T 3u1f_A 164 HVVTWVSEENYMFRLSAFRERLLEWYHANP-GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYV 242 (542)
T ss_dssp CBEEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECH
T ss_pred CcceeeccccceecchhHHHHHHHHHhhcc-cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeee
Confidence 55442211 1122 3333322110 11 1245568877776
Q ss_pred CchhhHH--HHH------------------hhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCC
Q 014658 105 WHIECSA--MSA------------------HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNN 164 (421)
Q Consensus 105 Whiecsa--m~~------------------~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G 164 (421)
|.-.... .+. ....+|.|+|++|+|++|||+++|+|++++.+.++ ++.++|||||+.+|
T Consensus 243 w~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~~-~~~v~~hg~l~~~G 321 (542)
T 3u1f_A 243 WLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPL-PKKIVAHGWWTKDR 321 (542)
T ss_dssp HHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCC-CSCEEEECCCEETT
T ss_pred eeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhcccc-cceeccccceecCC
Confidence 4321111 111 11235889999999999999999999999986544 45557789999999
Q ss_pred cccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHH--HHHHHHHHHHHHHhcCCccc----CC
Q 014658 165 EKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQE----HG 237 (421)
Q Consensus 165 ~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~--l~~l~~~l~~~~~~~~~~~~----~~ 237 (421)
+|||||+||||+|.|++++||+|++||||++ +++++|++||++.+.++.+. +++|+|.+.++......... ..
T Consensus 322 ~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~ 401 (542)
T 3u1f_A 322 KKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPA 401 (542)
T ss_dssp BCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCC
T ss_pred ceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccc
Confidence 9999999999999999999999999999998 58999999999999887653 23455554444332221111 11
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHH
Q 014658 238 KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVL 316 (421)
Q Consensus 238 ~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l 316 (421)
.....|+++++.++.+.+.+.++| ++|++++|++. |++|++.+|.|++..+||...+.. +....+++.++++++.++
T Consensus 402 ~~~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~ 479 (542)
T 3u1f_A 402 AYTEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIA-VFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTT 479 (542)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 123357899999999999999999 99999999999 999999999999999999522211 122233444444444444
Q ss_pred hHhc
Q 014658 317 RILG 320 (421)
Q Consensus 317 ~ilG 320 (421)
.+|.
T Consensus 480 ~ll~ 483 (542)
T 3u1f_A 480 LLLS 483 (542)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4444
No 10
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=2e-39 Score=340.11 Aligned_cols=310 Identities=19% Similarity=0.176 Sum_probs=209.1
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchh-------hhCCCCccc
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN-------NRAGERVAV 71 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~-------~~~g~~v~~ 71 (421)
|++|||. ++.++|+|+ |++.|++++++|.++|++|+.++.||||+++...|+. ..+.+ ...|.+++.
T Consensus 104 l~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~---~~~~~~~~g~~c~~~g~~~e~ 179 (536)
T 4dlp_A 104 AEVLNSS-NDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGE---EETEVRADGVRYGPQGTPVEW 179 (536)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECG---GGCEECTTSCEECTTSSBCEE
T ss_pred HHHcCCC-CCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCH---HHhhcCCCCCcccCCCCcceE
Confidence 4679998 578889987 9999999999999999999999999999988765543 11110 012333322
Q ss_pred cc------------------cccCCCcccc----------cccccCCCCcc-----cCCCCCCCCC--------CchhhH
Q 014658 72 DS------------------RKRNPADFAL----------WKAAKAGEPSW-----DSPWGPGRPG--------WHIECS 110 (421)
Q Consensus 72 ~~------------------~K~~p~DF~L----------Wk~~~~~~~~w-----~spwg~grPg--------Whiecs 110 (421)
.. .+.+| +|.. |-. .+..-| +-+||...|| |.-...
T Consensus 180 ~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l~--~~l~D~~ISR~~~~WGipiP~~~~~v~yvWfda~~ 256 (536)
T 4dlp_A 180 VEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFVK--SGLKDLSISRTTFDWGIPVPGDEKHVMYVWVDALT 256 (536)
T ss_dssp EEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHH--TCCCCEECEEC--CCSCBCTTCTTSEECHHHHHHH
T ss_pred EeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHHh--cCCCccCCccCCCcCCeeCCCCCCCceEEeeCCcH
Confidence 11 11122 2211 211 122223 2459988886 443222
Q ss_pred HHHHh--h--------cCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCcccccccCCccCHHHH
Q 014658 111 AMSAH--Y--------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI 180 (421)
Q Consensus 111 am~~~--~--------lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dl 180 (421)
++... + -++|.|+|+.|+||++||+.+|++++++++.++|.++++| |||+.+|+|||||+||+|+|.|+
T Consensus 257 ~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~h-g~v~~~G~KMSKS~GNvi~p~d~ 335 (536)
T 4dlp_A 257 NYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAH-GFLFNRGEKMSKSVGNVIDPFEL 335 (536)
T ss_dssp HHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEE-CCEEC------------CCHHHH
T ss_pred HHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEee-eeEeeCCceecccCCCCCCHHHH
Confidence 22110 0 1247899999999999999999999999877788888665 99999999999999999999999
Q ss_pred HHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHH-----HHHHHHHH-HHHHHhcCCcccC-CCCCCCChHHHHHHHH
Q 014658 181 TERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA-----VFYIYQTL-QDCEVALSPFQEH-GKTARINPAAEDCINK 252 (421)
Q Consensus 181 l~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~-----l~~l~~~l-~~~~~~~~~~~~~-~~~~~~d~~l~~~l~~ 252 (421)
+++||+|++|||+++ .++++|++||++.+.+..+. ++|+.+++ ..+...+.+..+. ......|++++..+.+
T Consensus 336 i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ll~~l~~ 415 (536)
T 4dlp_A 336 VERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADA 415 (536)
T ss_dssp HHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHHHHHHHHH
Confidence 999999999999999 59999999999999886542 45555443 2333333322111 1123457899999999
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchhhh-hhhHHHHHHHHHHHHHHHhHhc
Q 014658 253 LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 253 ~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~~~-~~~~~~l~~~~~~l~~~l~ilG 320 (421)
+.+.+.++| ++|++++|++. +++|+..+|+|++..+||...... ..+..++..+.++++.++.+|.
T Consensus 416 ~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~ 482 (536)
T 4dlp_A 416 ALETARKAM-DDQALHLALGA-IFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQ 482 (536)
T ss_dssp HHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 89999999999 999999999999999999522211 1223345555566666666666
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=1e-39 Score=343.76 Aligned_cols=285 Identities=17% Similarity=0.166 Sum_probs=209.1
Q ss_pred CCCCCCCCCCccccccc--cHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchh------------hhCC
Q 014658 1 MADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN------------NRAG 66 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~--~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~------------~~~g 66 (421)
|++|||. ++.++|+|+ |++.|++++++|.++|++|...+.+|||+++...|.. +.+.+ ...|
T Consensus 105 ~~~lgi~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~---~~~~~~~~~~g~~c~~~~~~g 180 (564)
T 3kfl_A 105 FQEMNYD-MNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTA---QNVADGVDRDGKPCKVSLESG 180 (564)
T ss_dssp HHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECG---GGEEEEECTTSCEEEEETTTS
T ss_pred HHHcCCC-CCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCH---HHhccCcCCCCCEeccccCCC
Confidence 3579997 678999984 9999999999999999999999999999988654332 11100 0135
Q ss_pred CCccccc------------------cccCCCcccccccc--------cCCC----Ccc----cCCCCCCCCC--------
Q 014658 67 ERVAVDS------------------RKRNPADFALWKAA--------KAGE----PSW----DSPWGPGRPG-------- 104 (421)
Q Consensus 67 ~~v~~~~------------------~K~~p~DF~LWk~~--------~~~~----~~w----~spwg~grPg-------- 104 (421)
.+++... .+.+| +|...... +.|. ++. +-.||...||
T Consensus 181 ~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yV 259 (564)
T 3kfl_A 181 HVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYV 259 (564)
T ss_dssp CBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECH
T ss_pred CccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEE
Confidence 5443211 11222 22211100 0122 233 4568888886
Q ss_pred CchhhHHHHH--hh-----------------cCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeeeeCCc
Q 014658 105 WHIECSAMSA--HY-----------------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNE 165 (421)
Q Consensus 105 Whiecsam~~--~~-----------------lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~~~G~ 165 (421)
|.-....+.. .| -.+|.|+|+.|+||++||+.+|||++++++.++|.++++| |||+.+|+
T Consensus 260 WfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~~h-g~v~~~G~ 338 (564)
T 3kfl_A 260 WLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPERLVSH-GWWTKDHK 338 (564)
T ss_dssp HHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEE-CCEEETTE
T ss_pred eccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCCCCCCcEEEEc-ccEeeCCc
Confidence 4332221111 11 1347899999999999999999999999987788888655 99999999
Q ss_pred ccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHhcCCc---ccC-CC
Q 014658 166 KMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVALSPF---QEH-GK 238 (421)
Q Consensus 166 KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~--~l~~l~~~l~~~~~~~~~~---~~~-~~ 238 (421)
|||||+||||+|.+++++||+|++||||++ .++++|++||++.+.+..| .+.+++|.+.++...+... .+. ..
T Consensus 339 KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~~p~~~~ 418 (564)
T 3kfl_A 339 KISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGMWPEPAE 418 (564)
T ss_dssp ECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCC
T ss_pred cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCCC
Confidence 999999999999999999999999999999 6999999999999988765 2334455444443333211 111 11
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 239 TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 239 ~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
....|++++..+..+.+.+.++| ++|++++|++. |++|++.+|+|++..+||.
T Consensus 419 ~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-i~~l~~~~n~Y~~~~kpW~ 471 (564)
T 3kfl_A 419 YSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIA-IFDVLRSLNAYVTENAPWK 471 (564)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHHHHHHHHHhcCChh
Confidence 12356889999999999999999 89999999999 9999999999999999995
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=3.4e-38 Score=332.41 Aligned_cols=314 Identities=14% Similarity=0.100 Sum_probs=214.5
Q ss_pred CCCCCCCCCCcccccc--ccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCC------------------ccccc----
Q 014658 1 MADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN------------------YGRLS---- 56 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t--~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~------------------Yg~ls---- 56 (421)
|++|||. ++.+.+.+ +|...+++++++|.++|++|..++.||||+.+... ||...
T Consensus 97 ~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg 175 (560)
T 3h99_A 97 FAGFNIS-YDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCG 175 (560)
T ss_dssp HHHTTCC-CSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTC
T ss_pred HHHcCCC-CCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccchhhhcc
Confidence 4679997 57777777 69999999999999999999999999999875432 22211
Q ss_pred ----cccchh---hhCCCCccccccccCC---Cccc---------------------cccccc--CCCCcccC-CCCCCC
Q 014658 57 ----GQRLEN---NRAGERVAVDSRKRNP---ADFA---------------------LWKAAK--AGEPSWDS-PWGPGR 102 (421)
Q Consensus 57 ----~~~~~~---~~~g~~v~~~~~K~~p---~DF~---------------------LWk~~~--~~~~~w~s-pwg~gr 102 (421)
+.++.+ ...|++++....+.-- .+|+ -|-... +-.++.+. .||...
T Consensus 176 ~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~i 255 (560)
T 3h99_A 176 ATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEI 255 (560)
T ss_dssp CBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBC
T ss_pred ccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeC
Confidence 011100 1223333211100000 0010 011111 11123344 579888
Q ss_pred CC--------CchhhHHHHHh---hc---C--------CCce-----EEeecccCcCcchHHHHHHHHhccCCCCCcEEE
Q 014658 103 PG--------WHIECSAMSAH---YL---S--------SKFD-----IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 155 (421)
Q Consensus 103 Pg--------Whiecsam~~~---~l---g--------~~~D-----ih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~ 155 (421)
|+ |.-....+... +. | +|.| +|++|+||++||+.+|+|++++++.++|.++++
T Consensus 256 P~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~ 335 (560)
T 3h99_A 256 PNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFV 335 (560)
T ss_dssp TTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEE
T ss_pred CCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhCcCCCCceeEEEeccccchhHHHHHHHHHHhCCCCCCcEEEE
Confidence 85 54333322111 10 1 2456 999999999999999999999988776677766
Q ss_pred eeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhhc-CCC-CCcccCHHHHHHHHHH-----HHHHHHHHH-HHH
Q 014658 156 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASDA-----VFYIYQTLQ-DCE 227 (421)
Q Consensus 156 h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~-~~~-~d~~fs~e~l~~~~~~-----l~~l~~~l~-~~~ 227 (421)
| |||+.+|+|||||+||||+|.|++++||+|++||||++. +.. +|++|+++.+.+..+. ++|+.+++. .+.
T Consensus 336 h-g~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~ 414 (560)
T 3h99_A 336 H-GYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFIN 414 (560)
T ss_dssp E-CCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHH
T ss_pred E-eEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 999999999999999999999999999999999999996 556 8999999998875432 234443322 222
Q ss_pred HhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh---hhhhhHHH
Q 014658 228 VALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ---QQLSLIES 304 (421)
Q Consensus 228 ~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~---~~~~~~~~ 304 (421)
..+.... .....|++++..++.+.+.+.++| ++|+++.|++. +++|++.+|+|++..+||...+ ....+..+
T Consensus 415 ~~~~~~~---~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~~~~~ 489 (560)
T 3h99_A 415 KRFDGVL---ASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVRE-IMALADLANRYVDEQAPWVVAKQEGRDADLQAI 489 (560)
T ss_dssp HHSTTBC---CSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTSTTCHHHHHHH
T ss_pred HhcCCCC---CCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCcCcHHHHHHH
Confidence 2222111 113468899999999999999999 89999999999 9999999999999999994111 11223344
Q ss_pred HHHHHHHHHHHHhHhcc
Q 014658 305 LRKIENEVKEVLRILGL 321 (421)
Q Consensus 305 l~~~~~~l~~~l~ilGi 321 (421)
+..+..+++.++.+|..
T Consensus 490 ~~~~~~~l~~~~~lL~P 506 (560)
T 3h99_A 490 CSMGINLFRVLMTYLKP 506 (560)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 55566777777777773
No 13
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=1.7e-37 Score=328.19 Aligned_cols=299 Identities=11% Similarity=0.026 Sum_probs=216.5
Q ss_pred CCCCCCCCCCcccccccc--HHHHHHHHHHHHHcCCee-----eeCCcEEEeccCCCCccccccccchhhhCCCCccccc
Q 014658 1 MADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDCAY-----VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDS 73 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~--i~~i~~~i~~L~~~g~aY-----~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~ 73 (421)
|++|||. .|.++|.|++ ++.|.+++++|.++|++| +.+|.+||++++|.+...| |.+|.
T Consensus 227 ~~~LgI~-~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~~~~l----------~~~vi--- 292 (592)
T 1iq0_A 227 MHALNAR-YDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLED----------PFFVL--- 292 (592)
T ss_dssp HHHTTCC-CSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSC----------CEEEE---
T ss_pred HHHcCCE-eEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechhcCCCCCC----------CceEE---
Confidence 3679997 5999999998 999999999999999999 7899999998865322121 22221
Q ss_pred cccC------CCcc--cccc-------cccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHH
Q 014658 74 RKRN------PADF--ALWK-------AAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE 138 (421)
Q Consensus 74 ~K~~------p~DF--~LWk-------~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~ 138 (421)
.|.| .+|| ++|| ..+ ++|++||| |||||++|++|....++..++||+++-+.-|+++
T Consensus 293 ~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~--r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~~--- 364 (592)
T 1iq0_A 293 LRSNGTATYYAKDIAFQFWKMGILEGLRFR---PYENPYYP--GLRTSAPEGEAYTPKAEETINVVDVRQSHPQALV--- 364 (592)
T ss_dssp ECTTSCBCHHHHHHHHHHHHTTSSCCCEEE---ECCCSSCT--TCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHH---
T ss_pred EecCCceEEecchHHHHHHHhhhhhhhhhh---hhhcCcch--hhcccccCcccCCCCCCEEEEEEeccHHHHHHHH---
Confidence 1222 3466 8897 433 36899997 9999999999987677777888887655444443
Q ss_pred HHHHHhccCCCC-CcEEEee--eeeeeCCcccccccCCccCHHHHHHh-------------------------cCchHHH
Q 014658 139 IAQSCAACQDSN-VSYWMHN--GHVTNNNEKMSKSLGNFFTIRQITER-------------------------YHPLALR 190 (421)
Q Consensus 139 ~a~~~a~~~~~~-~~~~~h~--g~l~~~G~KMSKSlGN~i~~~dll~~-------------------------yg~D~lR 190 (421)
.+.+.+++. ++ .+.|.|. |||+++|+|||||+||+|++.|++++ ||+|++|
T Consensus 365 ~~~~~alG~-~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiR 443 (592)
T 1iq0_A 365 RAALALAGY-PALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIR 443 (592)
T ss_dssp HHHHHHTTC-HHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHH
Confidence 233344443 44 3445565 88999999999999999999999999 9999999
Q ss_pred HHHhhcCCCCCcccCHHHHHHHHH----HHHHHHHHHHHHH-HhcCCcccC-CCCCCCChHHHHHHHHHHHHHHHHHHhc
Q 014658 191 HFLISAHYRSPLNYSVLQLDSASD----AVFYIYQTLQDCE-VALSPFQEH-GKTARINPAAEDCINKLRDEFHARMSDD 264 (421)
Q Consensus 191 ~~ll~~~~~~d~~fs~e~l~~~~~----~l~~l~~~l~~~~-~~~~~~~~~-~~~~~~d~~l~~~l~~~~~~v~~a~~dd 264 (421)
||+|+.++++|++||++.+.+..+ .++..+.|+..+. ......... ....+.+..++..+..+.+.+.+++ ++
T Consensus 444 yf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~ 522 (592)
T 1iq0_A 444 FSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EE 522 (592)
T ss_dssp HHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HH
T ss_pred HHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 999999999999999999987654 2333333333222 111100000 0011223567778888999999999 99
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhhhcc-----cC--ch-hhhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 265 LNTSHILTGAFQDALKFINSSLNMLKK-----KQ--PK-QQQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 265 ~~~~~Al~~~l~~~~~~~N~yi~~~~p-----w~--~~-~~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
++++.++.. |+++++.+|+|++.++| |- +. .....++.++.++..+|...|.+|||.+.
T Consensus 523 ~~p~~~~~y-l~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 523 RTPHVLAQY-LLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp TCHHHHHHH-HHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999 99999999999999954 42 11 12335677888999999999999999754
No 14
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=2.1e-34 Score=300.75 Aligned_cols=196 Identities=14% Similarity=0.169 Sum_probs=154.6
Q ss_pred CCCCCCCCCCccccccc-cHH-HHHHHHHHHHHcC----------------CeeeeCCcEEEeccCC-CCccccccccch
Q 014658 1 MADLQCLPPTYQPRVSD-HME-QIKDMITQIINND----------------CAYVVEGDVFFAVEKS-PNYGRLSGQRLE 61 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~-~i~-~i~~~i~~L~~~g----------------~aY~~~~~vyf~v~~~-~~Yg~ls~~~~~ 61 (421)
|+.||| .|+.+ |.|+ |++ .++++|++|+++| ++|.. + ||+++.+ +.+|+++ +
T Consensus 115 l~~Lgi-~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~~~~~~~~~~~----~ 185 (523)
T 1irx_A 115 VEKLGI-EVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAMVYCPEHRREA----E 185 (523)
T ss_dssp HHTTTC-CCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEEEECTTTCCEE----C
T ss_pred HHHcCC-CceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceeccccchhhCCcc----c
Confidence 468999 58999 9999 999 9999999999999 77765 2 8877654 3444432 1
Q ss_pred hhhCCCCccccccccCCCcccccccccCCCCcccCCC-CCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcc----hH
Q 014658 62 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPH----HE 136 (421)
Q Consensus 62 ~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spw-g~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH----~~ 136 (421)
+ ++.++ .+|.+|.+ ++|++.|.++| |.||||||++| +|...+||..+| ++|+||++|| |.
T Consensus 186 ~------~~~~~--~~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~vd--~~G~Dh~~~h~s~~~~ 250 (523)
T 1irx_A 186 I------IEWDG--GWKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVDFE--PAGKDHLVAGSSYDTG 250 (523)
T ss_dssp E------EEECS--SSCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCCBC--CEEHHHHSTTSHHHHH
T ss_pred c------cccCC--CCceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCCCc--CCCcCccCCCcchhhH
Confidence 1 22222 26788988 57889999999 99999999999 899999986555 8999999999 89
Q ss_pred HHHHHHHhccCCCCCcEEEeeeeeeeC--CcccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHH-HHHHHH
Q 014658 137 NEIAQSCAACQDSNVSYWMHNGHVTNN--NEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL-QLDSAS 213 (421)
Q Consensus 137 ~~~a~~~a~~~~~~~~~~~h~g~l~~~--G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e-~l~~~~ 213 (421)
++++| .|++.++| +|+|+|||+.+ |+|||||+||+|+|.++++.|++|++||||++.+++++++||++ .+.++.
T Consensus 251 ~~i~~-~alG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~~~~fs~~~~l~~~~ 327 (523)
T 1irx_A 251 KEIIK-EVYGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEIKIDLGLGILNLY 327 (523)
T ss_dssp HHHHH-HHHCCCCC--BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCEEECCSTTHHHHH
T ss_pred HHHHH-HHhCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCCCceeCcchhHHHHH
Confidence 99997 57765555 67999999987 89999999999999999999999999999999899999999999 888888
Q ss_pred HHHHHHHHHH
Q 014658 214 DAVFYIYQTL 223 (421)
Q Consensus 214 ~~l~~l~~~l 223 (421)
+.+.++++.+
T Consensus 328 ~~~~~~~~~~ 337 (523)
T 1irx_A 328 DEFEKVERIY 337 (523)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776643
No 15
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.97 E-value=5.6e-33 Score=294.73 Aligned_cols=296 Identities=15% Similarity=0.064 Sum_probs=214.8
Q ss_pred CCCCCCCCCCcccccccc--HHHHHHHHHHHHHcCCee-----eeCCcEEEeccCCCCccccccccchhhhCCCCccccc
Q 014658 1 MADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDCAY-----VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDS 73 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~--i~~i~~~i~~L~~~g~aY-----~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~ 73 (421)
|++|||. .|.+++.|+| ++.|.++|++|.++|++| +.+|.+||++++|.....+ |.+|.
T Consensus 257 ~~~L~I~-~D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~----------~~~v~--- 322 (629)
T 2zue_A 257 TYKLGVK-YDLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKN----------PILVL--- 322 (629)
T ss_dssp HHHHTCC-CSEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSC----------CEEEE---
T ss_pred HHHcCCc-cccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCcccc----------CceEE---
Confidence 3579997 5999999998 999999999999999999 7899999999876322111 22222
Q ss_pred cccC------CCcc--cccc--------cccCC-C-CcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcch
Q 014658 74 RKRN------PADF--ALWK--------AAKAG-E-PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 135 (421)
Q Consensus 74 ~K~~------p~DF--~LWk--------~~~~~-~-~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~ 135 (421)
.|+| ++|| ++|| +.++. + +++.+|||.|||| +...++..++||++|.+.-|.+
T Consensus 323 ~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~~~Pg--------~~~~~d~~IyV~g~~q~~~~~~- 393 (629)
T 2zue_A 323 RRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPN--------KFGNANIVINVIGAEQKHPQLA- 393 (629)
T ss_dssp ECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTT--------SSCCCSEEEEEEEGGGHHHHHH-
T ss_pred EecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCCCCCC--------ccCCCCcEEEEEeCcHhhHHHH-
Confidence 2333 4577 8897 44432 3 3445999999999 2334555678888776643333
Q ss_pred HHHHHHHHhccCCCC-CcEEEee--eeeeeCCcccccccC--CccCHHHHHHh---------------------------
Q 014658 136 ENEIAQSCAACQDSN-VSYWMHN--GHVTNNNEKMSKSLG--NFFTIRQITER--------------------------- 183 (421)
Q Consensus 136 ~~~~a~~~a~~~~~~-~~~~~h~--g~l~~~G~KMSKSlG--N~i~~~dll~~--------------------------- 183 (421)
..+.+.+++. ++ .+.|.|. |||+++|.|||||+| |+|++.|++++
T Consensus 394 --l~~~l~~lG~-~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~ 470 (629)
T 2zue_A 394 --IKYALQLLGF-EDAAANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEK 470 (629)
T ss_dssp --HHHHHHHTTC-HHHHHTEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred --HHHHHHHcCC-CCCCCeEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHh
Confidence 2333444443 44 3345555 899999999999999 99999999999
Q ss_pred cCchHHHHHHhhcCCCCCcccCHHHHHHHHH----HH----HHHHHHHHHHHHhcCC------cccCC--CCCCCChHHH
Q 014658 184 YHPLALRHFLISAHYRSPLNYSVLQLDSASD----AV----FYIYQTLQDCEVALSP------FQEHG--KTARINPAAE 247 (421)
Q Consensus 184 yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~----~l----~~l~~~l~~~~~~~~~------~~~~~--~~~~~d~~l~ 247 (421)
+|+|++|||+|+.++++|++||++.+.+..+ .+ .|+.+.++........ ..... ...+.+..++
T Consensus 471 vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~ 550 (629)
T 2zue_A 471 VGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELV 550 (629)
T ss_dssp HHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHH
T ss_pred cChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHH
Confidence 9999999999999999999999999975432 23 3343434332111000 00000 1122335678
Q ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 248 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 248 ~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
..+..+.+.+.+++ ++++++.++.. |++++..+|+|++.+....+.. ....++.++.++..+|...|.+|||.+.
T Consensus 551 ~~l~~fp~~v~~a~-~~~~p~~l~~y-l~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 551 IMLSKFPRIVEQAG-KDVKPHLIAWF-ANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHHHHHHH-HTTCTHHHHHH-HHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88999999999999 89999999999 9999999999999986654222 2345788889999999999999999754
No 16
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.97 E-value=1e-30 Score=286.32 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=155.2
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhh-c
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~ 196 (421)
+|+|+|++|+||+||||.|+++++.++.+. ++++.|+|||||+.+|+|||||+||||+|.+++++||+|++|||+++ +
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHC
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcC
Confidence 489999999999999999999999998874 67688899999999999999999999999999999999999999985 6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 276 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~ 276 (421)
++++|++||++.+..+.+.+.+++|.++++.... ..........|++++..++.+.+.+.++| ++|+++.|+..+++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~--~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~ 758 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE--VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (810)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC--CCSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc--CcccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 9999999999999999888899998877653211 00011112346788999999999999999 99999999986157
Q ss_pred HHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc
Q 014658 277 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 320 (421)
Q Consensus 277 ~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG 320 (421)
.+++.+|.|++..++-. .......+...+..++.+|.
T Consensus 759 ~l~~~~n~yi~~~k~~~-------~~~~~~~l~~~l~~l~~lLa 795 (810)
T 1wkb_A 759 SIMNDLRWYLRRTEGRD-------DEAKRYVLRTLADVWVRLMA 795 (810)
T ss_dssp HHHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcc-------hhHHHHHHHHHHHHHHHHHh
Confidence 99999999998876311 11112344455666666665
No 17
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.3e-31 Score=294.07 Aligned_cols=205 Identities=18% Similarity=0.168 Sum_probs=163.4
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeeeCCcccccccCCccCHHHHHHhcCchHHHHHHhh-c
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~ 196 (421)
+|+|+|++|+||+||||.|+++++.|+++. ++++.|+|||||+.+|+|||||+||||+|.+++++||+|++||||++ +
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 489999999999999999999999998875 66677799999999999999999999999999999999999999985 6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 276 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~ 276 (421)
++++|++|+++.+.++.+.+.+++|.++++... . ..........|++++..++.+..++.++| ++|+|+.|+..+++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~-~-~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEY-E-VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (967)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSS-C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcC-C-CCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 999999999999999999999999988765321 1 00111122356899999999999999999 99999999986146
Q ss_pred HHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHH
Q 014658 277 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQL 334 (421)
Q Consensus 277 ~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~ 334 (421)
.+++.+|.|++..++-. +.....++..++..++.+|. |+|- ..+++++.+
T Consensus 759 ~l~~~~n~Yi~~~k~~~-------~~~~~~~l~~~l~~l~~LLaP~~P~-~aEeiw~~L 809 (967)
T 1wz2_A 759 SIMNDLRWYLRRTEGRD-------DEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKL 809 (967)
T ss_dssp HHHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHS
T ss_pred HHHHHHHHHHHhccchh-------HHHHHHHHHHHHHHHHHHhccccch-HHHHHHHhc
Confidence 89999999998876311 11223345566666777776 3443 455566655
No 18
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.97 E-value=2.8e-30 Score=282.19 Aligned_cols=227 Identities=21% Similarity=0.253 Sum_probs=177.4
Q ss_pred CCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCcc
Q 014658 98 WGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFF 175 (421)
Q Consensus 98 wg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i 175 (421)
|...+-||.-+ ..-..++ +|.|+|++|+||+|||+.+.++++.++.+. ||.++++| |+|+ .+|+|||||+||+|
T Consensus 462 ~~~~~~~~p~~-~~~~~~~--~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~h-G~vld~~G~KMSKSlGNvI 537 (862)
T 1gax_A 462 WPLSTLGWPEE-TEDLKAF--YPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLH-GLVLDEKGQKMSKSKGNVI 537 (862)
T ss_dssp CTTGGGTTTSC-CHHHHHS--CSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEE-CCEECTTSCBCCTTTTCCC
T ss_pred cchhhccCCCc-hHHHHhh--CCceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEe-eeEEcCCCCCccccCCCCC
Confidence 55555667522 1222333 499999999999999999999999988875 88999887 8887 69999999999999
Q ss_pred CHHHHHHhcCchHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-CCCCCCCChHHHHHHHHH
Q 014658 176 TIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE-HGKTARINPAAEDCINKL 253 (421)
Q Consensus 176 ~~~dll~~yg~D~lR~~ll~~-~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~-~~~~~~~d~~l~~~l~~~ 253 (421)
+|.|++++||+|++||||++. ++++|++||++.+..+.+.+.+++|.++++...+..+.. .......|++++..++.+
T Consensus 538 dP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~~~~~~~~D~~il~~l~~~ 617 (862)
T 1gax_A 538 DPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRG 617 (862)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHH
Confidence 999999999999999999985 999999999999999999899999988766555443211 011233568999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHH--HHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHH
Q 014658 254 RDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEV 330 (421)
Q Consensus 254 ~~~v~~a~~dd~~~~~Al~~~l~~~~--~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~ 330 (421)
...+.++| ++|+++.|++. |++|+ ..+|.|++..+||... . +.....++..++..++.+|. |+|- ..+++
T Consensus 618 ~~~v~~a~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~l~~-~---~~~~~~~l~~~l~~~~~lL~P~~P~-~aEei 690 (862)
T 1gax_A 618 VEEITALY-EALDLAQAARE-VYELVWSEFCDWYLEAAKPALKA-G---NAHTLRTLEEVLAVLLKLLHPMMPF-LTSEL 690 (862)
T ss_dssp HHHHHHHH-TTTCHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHT-T---BHHHHHHHHHHHHHHHHHHTTTSHH-HHHHH
T ss_pred HHHHHHHH-HccCHHHHHHH-HHHHHHHHhhHHHHHHcchhhhc-c---HHHHHHHHHHHHHHHHHHHhhhhhH-HHHHH
Confidence 99999999 99999999999 99999 4789999999987311 0 12233445566667777776 3443 45566
Q ss_pred HHHHH
Q 014658 331 LQQLK 335 (421)
Q Consensus 331 ~~~~~ 335 (421)
++.+.
T Consensus 691 w~~L~ 695 (862)
T 1gax_A 691 YQALT 695 (862)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 66654
No 19
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.96 E-value=5.9e-30 Score=280.19 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=166.6
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|++|+||+|||+.+..+++.++++. ||+++|+| |+|+ .+|+|||||+||||+|.|++++||+|++||||++.
T Consensus 543 ~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~h-g~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~ 621 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVS 621 (821)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHH
T ss_pred CCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEE-eeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhC
Confidence 489999999999999999999999998775 88999988 8877 59999999999999999999999999999999996
Q ss_pred -CCCCCcccCHHHHHHH-HHHHHHHHHHHHHHHH--hcCCccc-----CCCCCCCChHHHHHHHHHHHHHHHHHHhccCh
Q 014658 197 -HYRSPLNYSVLQLDSA-SDAVFYIYQTLQDCEV--ALSPFQE-----HGKTARINPAAEDCINKLRDEFHARMSDDLNT 267 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~-~~~l~~l~~~l~~~~~--~~~~~~~-----~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~ 267 (421)
++++|++||++.+.++ .+.+.+++|.++++.. .+..+.. .......|++++..++.+.+.+.++| ++|++
T Consensus 622 ~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~f 700 (821)
T 1ile_A 622 APPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL-EAYDP 700 (821)
T ss_dssp SCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH-HTTCH
T ss_pred CCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCH
Confidence 7999999999999984 6667888888765431 1211111 01112346788999999999999999 89999
Q ss_pred HHHHHHHHHHHH--HHHHHHHhhhc--ccCchhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHH
Q 014658 268 SHILTGAFQDAL--KFINSSLNMLK--KKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLK 335 (421)
Q Consensus 268 ~~Al~~~l~~~~--~~~N~yi~~~~--pw~~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~ 335 (421)
++|++. |++|+ ..+|.|++..+ ||.... ...+...+.++..++..++.+|. |+|- ..+++++.+.
T Consensus 701 ~~A~~~-l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~~~~~lLaP~~P~-~aeelw~~L~ 770 (821)
T 1ile_A 701 TTSARA-LRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALVLVATLAAPFTPF-LAEVLWQNLV 770 (821)
T ss_dssp HHHHHH-HHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHHHHHHHHTTTSTT-HHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCC-cHHHHHHHHHHHHHHHHHHHHcCCccch-HHHHHHHhcc
Confidence 999999 99999 67899998875 474221 11122344455667777788887 4565 5677777664
No 20
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.96 E-value=7e-29 Score=273.23 Aligned_cols=212 Identities=18% Similarity=0.142 Sum_probs=166.3
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCC-CCCcEEEeeeeeee-CCcccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-~~~~~~~h~g~l~~-~G~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+|.|+|++|+||+|+|+...+++++++.+. ||+++++| |||+. +|+|||||+||||+|.+++++||+|++|||++++
T Consensus 547 ~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~h-G~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~lls~ 625 (917)
T 1ffy_A 547 FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSH-GFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSST 625 (917)
T ss_dssp SSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHHHTS
T ss_pred CCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEe-eeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHHhcc
Confidence 589999999999999988888888888775 78999777 99995 9999999999999999999999999999999999
Q ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--C----CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHH
Q 014658 197 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE--H----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHI 270 (421)
Q Consensus 197 ~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~~--~----~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~A 270 (421)
+|++|++||++.++++.+.+.+|+|.++++...+..+.. . ......|++++..++.+.+++.++| ++|+++.|
T Consensus 626 ~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a 704 (917)
T 1ffy_A 626 DYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNY-ENFDYLNI 704 (917)
T ss_dssp CTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHH-HccCHHHH
Confidence 999999999999999888889999998877666544321 0 0112356889999999999999999 99999999
Q ss_pred HHHHHHHHHH--HHHHHHhhhcccC--chhhhhhhHHHHHHHHHHHHHHHhHhcc-CCCCChHHHHHHH
Q 014658 271 LTGAFQDALK--FINSSLNMLKKKQ--PKQQQLSLIESLRKIENEVKEVLRILGL-LPPGAYSEVLQQL 334 (421)
Q Consensus 271 l~~~l~~~~~--~~N~yi~~~~pw~--~~~~~~~~~~~l~~~~~~l~~~l~ilGi-~~~~~~~~~~~~~ 334 (421)
++. |++|+. ..|.|++..+||. .......+.....++...+..++.+|.. +|- ..+++++.+
T Consensus 705 ~~~-l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~-~aEeiw~~l 771 (917)
T 1ffy_A 705 YQE-VQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVH-TAEEVWSHT 771 (917)
T ss_dssp HHH-HHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHTTS
T ss_pred HHH-HHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHc
Confidence 999 999998 6788999888852 1111111222233344555566666663 332 344455444
No 21
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.94 E-value=3.1e-28 Score=250.66 Aligned_cols=197 Identities=17% Similarity=0.165 Sum_probs=146.1
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----CCCccccc---cccch-------hhhCC
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPNYGRLS---GQRLE-------NNRAG 66 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----~~~Yg~ls---~~~~~-------~~~~g 66 (421)
|+.||+.+ +..+++|+|++.+++++++|+++|+||. +|++.. +..+|..+ +++.+ ++..|
T Consensus 155 L~wLGl~w-d~~~~qSdr~~~y~~~~~~Li~~G~AY~-----c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G 228 (553)
T 3aii_A 155 LEWLGVEW-DETVIQSDRMETYYEYTEKLIERGGAYV-----CTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEM 228 (553)
T ss_dssp HHHHTCCC-SEEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGS
T ss_pred HHHcCCCC-CCCcccccCHHHHHHHHHHHHHcCCcee-----CCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcC
Confidence 35689985 7899999999999999999999999995 676554 44456554 33333 45666
Q ss_pred CC------cc--ccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCc---ch
Q 014658 67 ER------VA--VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP---HH 135 (421)
Q Consensus 67 ~~------v~--~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~p---H~ 135 (421)
.+ +. ....+.++.||+|||....++|.|-..|. |+|+||++|+ +|.|.+|+++++. |+
T Consensus 229 ~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~-g~PtYhfa~~----------vDD~~~GIThviRG~D~~ 297 (553)
T 3aii_A 229 KEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYR-VYPMMNFSVA----------VDDHLLGVTHVLRGKDHL 297 (553)
T ss_dssp CTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCC-EEECHHHHHH----------HHHHHTTCCEEEC-----
T ss_pred CcCceEEEEEcccccCCCCCCCcEEEEecCCCCCccCCCce-eeeeeeeeee----------eeeccCCCceEeccHhhh
Confidence 42 22 23345688999999987777786444442 7999999994 5667777777777 99
Q ss_pred HHHHHHH--HhccCCCCCcEEEeeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchHHHHHHhhcC
Q 014658 136 ENEIAQS--CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHFLISAH 197 (421)
Q Consensus 136 ~~~~a~~--~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN---------------~i~~~dll~~-yg~D~lR~~ll~~~ 197 (421)
.+.++|. ..+.+.+++++| |+++|+++|.|||||+|| +.++.++.++ |.|+++|.||++.+
T Consensus 298 ~nt~~Q~~l~~alG~~~P~y~-H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G 376 (553)
T 3aii_A 298 ANREKQEYLYRHLGWEPPEFI-HYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIG 376 (553)
T ss_dssp CHHHHHHHHHHHHTCCCCEEE-CCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHcCCCCCeEE-EeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 9999998 344455677785 999999999999999998 7889999986 99999999999988
Q ss_pred C-CCCcccCHHHHHHHHHH
Q 014658 198 Y-RSPLNYSVLQLDSASDA 215 (421)
Q Consensus 198 ~-~~d~~fs~e~l~~~~~~ 215 (421)
| +++.+||++.|..+.+.
T Consensus 377 ~s~~~~~~s~~~L~~~~r~ 395 (553)
T 3aii_A 377 VKIADSTMSWKKIYGLNRS 395 (553)
T ss_dssp TCSSCBCCCHHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHHH
Confidence 8 78999999999887654
No 22
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.94 E-value=2.3e-27 Score=250.15 Aligned_cols=273 Identities=12% Similarity=0.050 Sum_probs=202.3
Q ss_pred CCCCCCCCCCccccccccH-HHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccC--
Q 014658 1 MADLQCLPPTYQPRVSDHM-EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRN-- 77 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i-~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~-- 77 (421)
|++|||.. +.+++.|+|+ +.|.++|+.|.++|++|+.+|.+||++++| |+ +++ .+| -.|+|
T Consensus 281 ~~~L~V~f-D~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~---g~----~~d-----~~v---~~KsDG~ 344 (607)
T 1f7u_A 281 YARLNIKY-DVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKF---NK----KLG-----KAI---VQKSDGT 344 (607)
T ss_dssp HHHTTCCC-SEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGT---CT----TTC-----EEE---EECTTSC
T ss_pred HHHcCCcc-eeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEeccc---CC----CCC-----cee---EeccCCC
Confidence 46799975 9999999999 899999999999999999999999999876 43 111 011 12333
Q ss_pred ----CCcc--cccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCC
Q 014658 78 ----PADF--ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV 151 (421)
Q Consensus 78 ----p~DF--~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~ 151 (421)
++|| ++||..+ ..++..++||++|.|+.|+++. +.+.+++ .++.
T Consensus 345 ~~Y~t~Dia~~~~k~~~--------------------------~~~d~~IyV~g~~q~~~f~q~~---~~~~~lG-~~~~ 394 (607)
T 1f7u_A 345 TLYLTRDVGAAMDRYEK--------------------------YHFDKMIYVIASQQDLHAAQFF---EILKQMG-FEWA 394 (607)
T ss_dssp CCHHHHHHHHHHHHHHH--------------------------HCCSEEEEECCGGGHHHHHHHH---HHHHHTT-CGGG
T ss_pred cCCCCCcHHHHHHHHhh--------------------------cCCCcEEEEEcChHhhHHHHHH---HHHHHcC-CCcC
Confidence 3344 4454321 1455678999999999888763 3444554 3677
Q ss_pred cEEEeeeeeeeCCcccccccCCccCHHHHHHhcCc----------------------------hHHHHHHhhcCCCCCcc
Q 014658 152 SYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHP----------------------------LALRHFLISAHYRSPLN 203 (421)
Q Consensus 152 ~~~~h~g~l~~~G~KMSKSlGN~i~~~dll~~yg~----------------------------D~lR~~ll~~~~~~d~~ 203 (421)
++|+|.++.+++ |||||+||+|++.|++++++. .++|||+|+.+++++++
T Consensus 395 ~~~~Hv~fg~v~--kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~ 472 (607)
T 1f7u_A 395 KDLQHVNFGMVQ--GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYE 472 (607)
T ss_dssp GGEEEECCCCEE--SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEE
T ss_pred cEEEEecccccc--cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcc
Confidence 789999997776 699999999999999998833 47999999999999999
Q ss_pred cCHHHHHHHHH--------HHHHHHHHHHHHHHhcCCc--ccCC---CCCCCChHHHHHHHHHHHHHHHHHHhccChHHH
Q 014658 204 YSVLQLDSASD--------AVFYIYQTLQDCEVALSPF--QEHG---KTARINPAAEDCINKLRDEFHARMSDDLNTSHI 270 (421)
Q Consensus 204 fs~e~l~~~~~--------~l~~l~~~l~~~~~~~~~~--~~~~---~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~A 270 (421)
|+++.+..... .+.|+.+.++...+ +... .... ...+.+..++..+.++.+.+..++ ++++++.+
T Consensus 473 Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka~~-~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~P~~l 550 (607)
T 1f7u_A 473 FKWERMLSFEGDTGPYLQYAHSRLRSVERNASG-ITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHEPTTV 550 (607)
T ss_dssp CCHHHHHCCSSSSHHHHHHHHHHHHHHHHHTTT-SCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCCHHHH
T ss_pred cCHHHHHHHhccchHHHHHHHHHHHHHHHHhcC-CCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHH
Confidence 99999976542 12344444433210 0000 0000 112223567788888999999999 89999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCchh-hhhhhHHHHHHHHHHHHHHHhHhccCCC
Q 014658 271 LTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 271 l~~~l~~~~~~~N~yi~~~~pw~~~~-~~~~~~~~l~~~~~~l~~~l~ilGi~~~ 324 (421)
+.. +++++..+|+|++.+....+.. ....++.++.++..+|...|.+|||.+.
T Consensus 551 ~~Y-l~~La~~fn~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 551 VTY-LFKLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHH-HHHHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHH-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999 9999999999999987764322 2346888999999999999999999764
No 23
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.93 E-value=4.5e-26 Score=248.53 Aligned_cols=213 Identities=16% Similarity=0.135 Sum_probs=158.2
Q ss_pred cccCCCCCCCCCCchhh-----HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhc------c-CCCCCcEEEeeeee
Q 014658 93 SWDSPWGPGRPGWHIEC-----SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA------C-QDSNVSYWMHNGHV 160 (421)
Q Consensus 93 ~w~spwg~grPgWhiec-----sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~------~-~~~~~~~~~h~g~l 160 (421)
+.+|.|...|-+|.-.. ..-...++ |+|+++||+||...|..|-.....++ . .+||+++ ++||||
T Consensus 513 w~dSswy~~r~~~p~~~~~~~~~~~~~~~~--PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~l-l~qGmV 589 (880)
T 4arc_A 513 FMESSWYYARYTCPQYKEGMLDSEAANYWL--PVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQL-LCQGMV 589 (880)
T ss_dssp TTGGGTHHHHTTSTTCCSSSCCHHHHHHHC--SEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEE-ECCCCE
T ss_pred cccCcHHHHhhcCCCccccccChHHHhccC--CceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHe-EEeceE
Confidence 34688887777765321 12233344 99999999999999988876554332 1 2588888 556999
Q ss_pred e--------eCCc------------------------------------ccccccCCccCHHHHHHhcCchHHHHHHhhc
Q 014658 161 T--------NNNE------------------------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA 196 (421)
Q Consensus 161 ~--------~~G~------------------------------------KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~ 196 (421)
+ .+|+ |||||+||||+|.|++++||+|++|||+|+.
T Consensus 590 l~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~ 669 (880)
T 4arc_A 590 LADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFA 669 (880)
T ss_dssp EEEEEEEECTTSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHS
T ss_pred eecceeccccCCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhc
Confidence 5 3565 9999999999999999999999999999996
Q ss_pred -CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Q 014658 197 -HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ-EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 274 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~~~~~l~~l~~~l~~~~~~~~~~~-~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~ 274 (421)
+|++|++||++.++.+.+.+.++||.+.++........ ........|++++..+++++++|.++|+++|+|+.|++.
T Consensus 670 ~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~- 748 (880)
T 4arc_A 670 SPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAA- 748 (880)
T ss_dssp SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH-
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-
Confidence 99999999999999999999999998876543211100 001112346889999999999999999548999999999
Q ss_pred HHHHHHHHHHHHhhhcccCchhhhhhhHHHHHHHHHHHHHHHhHhcc
Q 014658 275 FQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 321 (421)
Q Consensus 275 l~~~~~~~N~yi~~~~pw~~~~~~~~~~~~l~~~~~~l~~~l~ilGi 321 (421)
|++|++.+|+|... . ......+..++..++.+|..
T Consensus 749 l~efvn~l~k~~~~------~------~~~~~~l~~~l~~ll~LLaP 783 (880)
T 4arc_A 749 IMELMNKLAKAPTD------G------EQDRALMQEALLAVVRMLNP 783 (880)
T ss_dssp HHHHHHHHHTSCCS------S------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcc------c------hHHHHHHHHHHHHHHHHHhh
Confidence 99999998876311 0 01122345566677777773
No 24
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.93 E-value=3.7e-27 Score=242.71 Aligned_cols=197 Identities=19% Similarity=0.148 Sum_probs=160.0
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC----C----CCccccc---cccc-------hh
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----S----PNYGRLS---GQRL-------EN 62 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~----~----~~Yg~ls---~~~~-------~~ 62 (421)
|+.||+.+++..+++|+|++.+.+++++|+++|+||. +|++.. + ..+|..+ ++.. ++
T Consensus 85 L~wLGl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~-----c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~ 159 (553)
T 1qtq_A 85 VEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV-----DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEK 159 (553)
T ss_dssp HHHTTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHH
T ss_pred HHHcCCCCCCCCeehcccHHHHHHHHHHHHHCCCcee-----cCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHH
Confidence 4579999999999999999999999999999999996 565432 1 1356544 2223 24
Q ss_pred hhCCC--------C--ccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcC
Q 014658 63 NRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 132 (421)
Q Consensus 63 ~~~g~--------~--v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~ 132 (421)
+..|. | ++....+.++.||+|||...+++|.|.++| .|+|+||+.|+ +|.|.+|+++++
T Consensus 160 m~~G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~v----------vDDh~~GITHvi 228 (553)
T 1qtq_A 160 MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHC----------ISDALEGITHSL 228 (553)
T ss_dssp HHTTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHTTCSEEE
T ss_pred HhCCCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccE----------EEeccCCcceEe
Confidence 56675 3 344567889999999999888999999999 79999999874 788999999999
Q ss_pred ---cchHHHHHHH---HhccCCCCCcEEEeeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchHHH
Q 014658 133 ---PHHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALR 190 (421)
Q Consensus 133 ---pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN---------------~i~~~dll~~-yg~D~lR 190 (421)
+||.|.++|. .|++...++++| |+|||+++|.|||||+|| ++++.++.++ |.|+++|
T Consensus 229 Rg~e~~~n~~~q~~l~~alg~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAir 307 (553)
T 1qtq_A 229 CTLEFQDNRRLYDWVLDNITIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIR 307 (553)
T ss_dssp EEGGGTTTHHHHHHHHHTSCCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHH
T ss_pred eccchhhhHHHHHHHHHHcCCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHH
Confidence 9999999998 566433367887 889999999999999997 7899999976 9999999
Q ss_pred HHHhhcCCCCCcc-cCHHHHHHHHH
Q 014658 191 HFLISAHYRSPLN-YSVLQLDSASD 214 (421)
Q Consensus 191 ~~ll~~~~~~d~~-fs~e~l~~~~~ 214 (421)
.||++.+|....+ +++..|.+..+
T Consensus 308 nfl~~lG~s~~~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 308 EFCKRIGVTKQDNTIEMASLESCIR 332 (553)
T ss_dssp HHHHHHCCCSSCCCBCHHHHHHHHH
T ss_pred HHHHHcCCCCCccccchhhHHHHHH
Confidence 9999988765444 78888877543
No 25
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.92 E-value=2.2e-24 Score=220.66 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=186.8
Q ss_pred CCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCCCCccccccccchhhhCCCCccccccccCCCcc
Q 014658 2 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 81 (421)
Q Consensus 2 ~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF 81 (421)
++|||. -|.+..=|.....|-+.++.|.++|++|+.+|.++|+++. ||. +| |+
T Consensus 156 ~~l~V~-fD~~~~Ess~~~~~~~vv~~L~~~g~~~e~dGa~~~~~~~---~g~-------------------~~----~~ 208 (464)
T 3fnr_A 156 EQAKIK-IDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQ---KGD-------------------EK----DR 208 (464)
T ss_dssp HHTTCC-CSCEEEGGGGSTTHHHHHHHHHHTTCEEEETTEEEECGGG---GTC-------------------SS----CE
T ss_pred HHhCCC-ceeecCHHHHHHHHHHHHHHHHHCCCEEEeCCeEEEEecc---cCC-------------------CC----ce
Confidence 467886 4555443332337888999999999999999999998764 331 11 45
Q ss_pred cccccccCCCCcccCCCCCCCCCCchhhHHHHHhhc-CCCceEEeecccCcCcchHHHHHHHHhccCCCCCc-EEEeeee
Q 014658 82 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYL-SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS-YWMHNGH 159 (421)
Q Consensus 82 ~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~l-g~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~-~~~h~g~ 159 (421)
+|=|. +|.+.+.++ ..++...++- |..--|++.|.|+.- |..-..+.+.+++..| .+ ..+++|+
T Consensus 209 vl~ks--DG~~~Y~t~----------DiA~~~~r~~~~~d~~Iyv~G~dq~~-~f~~l~~~l~~lG~~~-~~~~h~~~g~ 274 (464)
T 3fnr_A 209 VIIRE--DGRGTYLAA----------DIVYHKDKMSRGYGKCINIWGADHHG-YIPRMKAAMEFLGFDS-NNLEIILAQM 274 (464)
T ss_dssp EEECT--TSCBCHHHH----------HHHHHHHHHTSSCSEEEEEEEGGGGG-GHHHHHHHHHTTTCCG-GGEEEEEECC
T ss_pred EEEeC--CCceehhhH----------HHHHHHHHHHcCCCeEEEEecCcHHH-HHHHHHHHHHHcCCCc-cceEEEEeee
Confidence 65543 454433222 2223333331 322348899999552 3333334444554443 34 4467799
Q ss_pred eee--CCc--ccccccCCccCHHHHHHhcCchHHHHHHhhcCCCCCcccCHHHHHHHHH-----HHHHHHHHHHHHHHhc
Q 014658 160 VTN--NNE--KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD-----AVFYIYQTLQDCEVAL 230 (421)
Q Consensus 160 l~~--~G~--KMSKSlGN~i~~~dll~~yg~D~lR~~ll~~~~~~d~~fs~e~l~~~~~-----~l~~l~~~l~~~~~~~ 230 (421)
|++ +|+ |||||+||+|+|.|+++++|+|++|||+++.++++|++|+++.+.+..+ .++..+.|+..+....
T Consensus 275 V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~ 354 (464)
T 3fnr_A 275 VSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKA 354 (464)
T ss_dssp EEEEETTEECCC---CCSSCBHHHHHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 965 785 9999999999999999999999999999999999999999999866432 1222233333222211
Q ss_pred C--Cccc-C---CCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccCch-hhhhhhHH
Q 014658 231 S--PFQE-H---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIE 303 (421)
Q Consensus 231 ~--~~~~-~---~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~~~-~~~~~~~~ 303 (421)
. .... . ......+.+++..+.++.+.+.+++ +++++++++.. |++++..+|+|++.++...+. .....++.
T Consensus 355 ~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~-~~~ep~~i~~y-L~~La~~~n~fY~~~~vl~~~~~~~~aRL~ 432 (464)
T 3fnr_A 355 GKKIDDVMKADLQSLNQDGVNLLFEALNLKAVLNDAF-EARALQKIPDY-LKNLAANFHKFYNENKVVGSANENDLLKLF 432 (464)
T ss_dssp TCCTTTSTTCCCTTCCHHHHHHHHHHHTHHHHHHHHH-HHTCTTHHHHH-HHHHHHHHHHHHHHCCCTTSTTHHHHHHHH
T ss_pred hccCCCccccChhhCChHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhCcCCCCCHHHHHHHHH
Confidence 1 1100 0 0111126788889999999999999 99999999999 999999999999998775422 23345777
Q ss_pred HHHHHHHHHHHHHhHhccCCC
Q 014658 304 SLRKIENEVKEVLRILGLLPP 324 (421)
Q Consensus 304 ~l~~~~~~l~~~l~ilGi~~~ 324 (421)
++.++ +|...|.+|||.+.
T Consensus 433 L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 433 SLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHH--HHHHHHHHTTCCCC
T ss_pred HHHHH--HHHHHHHhcCCCch
Confidence 77777 99999999999765
No 26
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.92 E-value=6.1e-26 Score=242.87 Aligned_cols=196 Identities=16% Similarity=0.106 Sum_probs=155.1
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC--------CCCcccccc-cc--c-------hh
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SPNYGRLSG-QR--L-------EN 62 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~--------~~~Yg~ls~-~~--~-------~~ 62 (421)
|+.||+.+++..+++|+|++.+++++++|+++|+||. +|++.. ...||..|+ ++ . ++
T Consensus 125 L~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~-----c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe~ 199 (851)
T 2hz7_A 125 LKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV-----ESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRR 199 (851)
T ss_dssp HHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHHH
T ss_pred HHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe-----ecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHHH
Confidence 3569999999999999999999999999999999995 565532 122566542 21 2 34
Q ss_pred hhCCC--------C--ccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcC
Q 014658 63 NRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 132 (421)
Q Consensus 63 ~~~g~--------~--v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~ 132 (421)
+..|. | ++....+.++.||+|||...+++|.|.+|| .|+|+||++|+ +|.|.+|+++++
T Consensus 200 m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~v----------VDD~~~GITHVi 268 (851)
T 2hz7_A 200 MKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHP----------LQDAIEGVTHSM 268 (851)
T ss_dssp HHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHHTCSEEE
T ss_pred HhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeE----------eeeccCCcceee
Confidence 56675 3 445567889999999999888999999999 89999999996 456667777766
Q ss_pred c---chHHHHHHH---HhccCCCCCcEEEeeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchHHH
Q 014658 133 P---HHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALR 190 (421)
Q Consensus 133 p---H~~~~~a~~---~a~~~~~~~~~~~h~g~l~~~G~KMSKSlGN---------------~i~~~dll~~-yg~D~lR 190 (421)
. |+.|.++|. .|++....+++| |++||.++|.|||||+|| ++++.++.++ |.|+++|
T Consensus 269 RG~D~~~n~~~q~~l~~alG~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr 347 (851)
T 2hz7_A 269 CSLEFVDNRAIYDWLMEKLNFDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVR 347 (851)
T ss_dssp EEGGGTTTHHHHHHHHHHTTCSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHH
T ss_pred cchhhhhChHHHHHHHHHcCCCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHH
Confidence 6 899999997 666433226776 779999999999999997 6789999976 9999999
Q ss_pred HHHhhcCCCC-CcccCHHHHHHHH
Q 014658 191 HFLISAHYRS-PLNYSVLQLDSAS 213 (421)
Q Consensus 191 ~~ll~~~~~~-d~~fs~e~l~~~~ 213 (421)
.||++.+|.. +..+++..+....
T Consensus 348 ~fl~~lG~s~~~~~~e~~~le~~~ 371 (851)
T 2hz7_A 348 AFAAQIGVSRTNRTVDIAVYENAV 371 (851)
T ss_dssp HHHHHSCCCSSCEEECHHHHHHHH
T ss_pred HHHHhcCCCCCcccccHHHHHHHH
Confidence 9999987753 4457888877543
No 27
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.92 E-value=8.8e-25 Score=239.72 Aligned_cols=230 Identities=13% Similarity=0.073 Sum_probs=151.4
Q ss_pred CCceEEeecccCcCcchHHHHHHH---Hhc---cC-CCCCcEEEeeeeeee-----------------------------
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQS---CAA---CQ-DSNVSYWMHNGHVTN----------------------------- 162 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~---~a~---~~-~~~~~~~~h~g~l~~----------------------------- 162 (421)
.|+|+++||+|+...|..|-.... ..+ .+ .||++++.| |||+-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~-G~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQ-GMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPES 608 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECC-CCEEEEEEEEEEEEETTEEECCHHHHHHHTCSCS
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheec-ceEeccceeccccccccceeccccccccccccCc
Confidence 399999999999877766644333 222 22 588999555 99974
Q ss_pred ------------------CC-------cccccccCCccCHHHHHHhcCchHHHHHHhh-cCCCCCcccCHHHHHHHHHHH
Q 014658 163 ------------------NN-------EKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDAV 216 (421)
Q Consensus 163 ------------------~G-------~KMSKSlGN~i~~~dll~~yg~D~lR~~ll~-~~~~~d~~fs~e~l~~~~~~l 216 (421)
+| +|||||+||+|+|.|++++||+|++|||+++ +++++|++||++.++.+.+.+
T Consensus 609 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l 688 (878)
T 2v0c_A 609 ALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFL 688 (878)
T ss_dssp EEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHH
T ss_pred hhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHH
Confidence 89 9999999999999999999999999999999 699999999999999999999
Q ss_pred HHHHHHHHHHHHhcC-C--cccCCCCCCCChHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhhhcccC
Q 014658 217 FYIYQTLQDCEVALS-P--FQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQ 293 (421)
Q Consensus 217 ~~l~~~l~~~~~~~~-~--~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~dd~~~~~Al~~~l~~~~~~~N~yi~~~~pw~ 293 (421)
.+++|.+......+. . ..........|++++..++++.+.+.++| ++|+|+.|++. |++|++.+|+|.+..+
T Consensus 689 ~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~-l~~f~~~l~k~~~~~~--- 763 (878)
T 2v0c_A 689 NRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA-LMEFLNALYEYRKDRP--- 763 (878)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHHHHhhhcccch---
Confidence 999998765433220 0 00001113456899999999999999999 99999999999 9999999999975421
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHhHhc-cCCCCChHHHHHHHHHHHHH--------hhccCHHHHHHHHHHHHHHhcCCC
Q 014658 294 PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVLQQLKDKALK--------RAELTEEDVLQLIEERAAARKNKD 364 (421)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~l~~~l~ilG-i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~Li~~R~~aR~~K~ 364 (421)
. . ..+..++..++.+|. |+|- ..+++++.+++.... ...+..+.+..+++.|...|..-.
T Consensus 764 -~-----~----~~l~~~l~~l~~LLaPf~P~-~aEElw~~Lg~~sv~~~~wP~~d~~~l~~~~~~~~vqvngkvR~~i~ 832 (878)
T 2v0c_A 764 -V-----T----PVYRTAIRYYLQMLFPFAPH-LAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGAVAGTIH 832 (878)
T ss_dssp -S-----C----HHHHHHHHHHHHHHTTTSHH-HHHHHHHHHCSSCGGGSCCCCCCGGGGC-------------------
T ss_pred -h-----H----HHHHHHHHHHHHHHcccchH-HHHHHHHHcCCCceeecCCCCCCHHHHHHHHHHHHHhhHHHHHHHcc
Confidence 0 0 123455566666666 3333 345555554300000 001123455666666666665444
Q ss_pred h
Q 014658 365 F 365 (421)
Q Consensus 365 f 365 (421)
.
T Consensus 833 v 833 (878)
T 2v0c_A 833 I 833 (878)
T ss_dssp -
T ss_pred c
Confidence 3
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.86 E-value=3.5e-22 Score=205.34 Aligned_cols=185 Identities=17% Similarity=0.187 Sum_probs=139.4
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEecc-----------------CCCC-ccccccccc-h
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE-----------------KSPN-YGRLSGQRL-E 61 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~-----------------~~~~-Yg~ls~~~~-~ 61 (421)
|+.|||.++...++.|+|++.+.+++++|+++|+||. +||+. .++. |+.||.... +
T Consensus 60 L~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~ 134 (492)
T 2cfo_A 60 LQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAA 134 (492)
T ss_dssp HHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHH
T ss_pred HHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCceE-----ecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHH
Confidence 3569998777789999999999999999999999995 66654 3433 555665422 3
Q ss_pred hhhCCC----Ccccc----------------ccccCC-CcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCC
Q 014658 62 NNRAGE----RVAVD----------------SRKRNP-ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120 (421)
Q Consensus 62 ~~~~g~----~v~~~----------------~~K~~p-~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~ 120 (421)
.+..|. |+..+ ..+.++ .||+|||..+ || |.|+|+||++|+
T Consensus 135 ~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~v---------- 196 (492)
T 2cfo_A 135 FEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVV---------- 196 (492)
T ss_dssp HHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHH----------
T ss_pred HHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CC-CCCceeehhhhh----------
Confidence 344554 32222 246678 8999999853 56 799999999996
Q ss_pred ceEEeecccCcCc---chHHHHHHHH---hccCCCCCcEEEeeeee-eeCCcccccccCCccCHHHHHHh-cCchHHHHH
Q 014658 121 FDIHGGGIDLIFP---HHENEIAQSC---AACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITER-YHPLALRHF 192 (421)
Q Consensus 121 ~Dih~gG~Dli~p---H~~~~~a~~~---a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ 192 (421)
+|.|.+|+++++. |+.|.+.|.. |++. +++ .|+|.+++ ..+|+|||||.||+ ++.++.+. |.|+++|.|
T Consensus 197 vDD~~~gIthviRG~D~~~~t~~q~~l~~alg~-~~P-~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~ 273 (492)
T 2cfo_A 197 VDDIAMGITDVIRGEDHIGNTPKQILLYEALGA-TPP-NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANY 273 (492)
T ss_dssp HHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTC-CCC-EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHH
T ss_pred hhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCC-CCc-eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHH
Confidence 6777788888887 9999999984 4443 334 67999995 57999999999997 88999874 999999999
Q ss_pred HhhcCCCC----CcccCHHHHHH
Q 014658 193 LISAHYRS----PLNYSVLQLDS 211 (421)
Q Consensus 193 ll~~~~~~----d~~fs~e~l~~ 211 (421)
|+.-.+.. .--||.+.+.+
T Consensus 274 l~~lG~s~~~~~~e~~~~~e~i~ 296 (492)
T 2cfo_A 274 MTLLGWSPPEGVGELFTLDLAAK 296 (492)
T ss_dssp HHHTTBCCCTTTCSCCCHHHHHH
T ss_pred HHHhCCCCCCccccccCHHHHHh
Confidence 98854432 33467666543
No 29
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.81 E-value=1e-20 Score=183.02 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=108.8
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeee---------CCcEEEeccCC-CCccccc---------cccch
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV---------EGDVFFAVEKS-PNYGRLS---------GQRLE 61 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~---------~~~vyf~v~~~-~~Yg~ls---------~~~~~ 61 (421)
|+.|||.++...++.|+|++.+.+++++|+++|+||.- .|.+|+.+-++ +.||+.+ ....+
T Consensus 64 L~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~ 143 (298)
T 1nzj_A 64 LEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFT 143 (298)
T ss_dssp HHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEE
T ss_pred HHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCccccee
Confidence 35799998777999999999999999999999999974 46699988776 6788766 23344
Q ss_pred hhhCCCCccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHH
Q 014658 62 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 141 (421)
Q Consensus 62 ~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~ 141 (421)
++..|. ++.+ .+.++.||+|||+ .|+|+||++|++ .....|.+.+|| |.| |+.|.++|
T Consensus 144 D~~~G~-~~~~-~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D----~l~~t~~q 201 (298)
T 1nzj_A 144 DQLRGI-IHAD-EKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GAD----LIEPTVRQ 201 (298)
T ss_dssp ETTTEE-EECC-HHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGG----GHHHHHHH
T ss_pred hhhCcc-cccC-cccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Ccc----ccccHHHH
Confidence 555554 3322 3457789999995 589999999977 677889999999 899 78999999
Q ss_pred HH--hccCCCCCcEEEeeeee-eeCCcccccccCCc
Q 014658 142 SC--AACQDSNVSYWMHNGHV-TNNNEKMSKSLGNF 174 (421)
Q Consensus 142 ~~--a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~ 174 (421)
.. .+.+.+++++ +|.+++ ..+|+|||||.||+
T Consensus 202 ~~l~~alG~~~p~~-~H~pll~~~~g~KLSKR~g~~ 236 (298)
T 1nzj_A 202 ISLYQLFGWKVPDY-IHLPLALNPQGAKLSKQNHAP 236 (298)
T ss_dssp HHHHHHHTCCCCEE-EEECBCCC-------------
T ss_pred HHHHHHcCCCCCeE-EEeeeeECCCCCcccccCCcc
Confidence 86 3445566667 899998 58999999999997
No 30
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.27 E-value=3.4e-11 Score=123.59 Aligned_cols=156 Identities=21% Similarity=0.338 Sum_probs=104.2
Q ss_pred ccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC--------------CCc-cccccccchh------hhCCCC---
Q 014658 13 PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PNY-GRLSGQRLEN------NRAGER--- 68 (421)
Q Consensus 13 ~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~--------------~~Y-g~ls~~~~~~------~~~g~~--- 68 (421)
.+.|++++.+.+++++|+++|.||.- |++... +.| |.+|.+++.. +..|..
T Consensus 92 y~QS~r~~~y~~~a~~L~~~G~aY~c-----~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~i 166 (481)
T 2o5r_A 92 YRQSERVEIYREHAERLVKEGKAYYV-----YAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAV 166 (481)
T ss_dssp CBGGGGHHHHHHHHHHHHHTTSEEEE-----CCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEE
T ss_pred eeeeccHHHHHHHHHHHHHCCCeeEe-----cCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceE
Confidence 47899999999999999999999953 222210 012 2233444321 123321
Q ss_pred -cc---------------ccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcC
Q 014658 69 -VA---------------VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 132 (421)
Q Consensus 69 -v~---------------~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~ 132 (421)
.. +.....+..||+|||.. |.|.||+.|. +..+..| ++.-+-|.|
T Consensus 167 R~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsD-------------G~ptY~~a~v-vDD~~~g--ithvirG~D--- 227 (481)
T 2o5r_A 167 FFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSN-------------GLPTYNFACV-VDDMLME--ITHVIRGDD--- 227 (481)
T ss_dssp EECCCSSCEEEEETTTEEEEECTTSSCBEEEECTT-------------SCBCHHHHHH-HHHHHTT--CSEEEEEGG---
T ss_pred EEEcCCCceEEEecccceeEeccccCCCeEEEccC-------------CCcchhhHHH-HHHHhCC--CCeEEEChh---
Confidence 00 01122345688888863 8999999874 5556666 444468999
Q ss_pred cchHHHHHHH---HhccCCCCCcEEEeeeee-eeCCcccccccCCccCHHHHHH-hcCchHHHHHHhhc
Q 014658 133 PHHENEIAQS---CAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA 196 (421)
Q Consensus 133 pH~~~~~a~~---~a~~~~~~~~~~~h~g~l-~~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~ 196 (421)
|+.+.+.|. .+++.++| .|.|..++ ..+|+||||+.|++ ++.++.+ .|.|+++|.|+..-
T Consensus 228 -~~~~t~~q~~l~~aLG~~~p--~~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~l 292 (481)
T 2o5r_A 228 -HLSNTLRQLALYEAFEKAPP--VFAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEALVNYLALL 292 (481)
T ss_dssp -GHHHHHHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTS
T ss_pred -HHHhHHHHHHHHHHcCCCCC--eEEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHh
Confidence 666666664 56654443 36899985 46899999999998 8999988 48899999888764
No 31
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.23 E-value=5.4e-11 Score=121.56 Aligned_cols=186 Identities=16% Similarity=0.168 Sum_probs=118.6
Q ss_pred CCCCCCCCCcc---------ccccccHHHHHHHHHHHHHcCCeeeeC--CcEEEecc----CCCC-ccccccccc-hhhh
Q 014658 2 ADLQCLPPTYQ---------PRVSDHMEQIKDMITQIINNDCAYVVE--GDVFFAVE----KSPN-YGRLSGQRL-ENNR 64 (421)
Q Consensus 2 ~~Lnv~~p~~~---------~r~t~~i~~i~~~i~~L~~~g~aY~~~--~~vyf~v~----~~~~-Yg~ls~~~~-~~~~ 64 (421)
..||+. ++-. .+.|++.+...+++++|+++|+||.-. ..-..... .++. +..++.... ..+.
T Consensus 61 ~wlGl~-wd~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~ 139 (468)
T 1j09_A 61 KWLGLS-YDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERAR 139 (468)
T ss_dssp HHTTCC-CSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHH
T ss_pred HHcCCC-CCCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHh
Confidence 457887 5655 489999999999999999999999531 00000000 1111 222332111 1122
Q ss_pred CCCC------cc--------------ccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEE
Q 014658 65 AGER------VA--------------VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIH 124 (421)
Q Consensus 65 ~g~~------v~--------------~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih 124 (421)
.|.+ ++ +.....+..||+|||.. |.|.||+.|+ .-.+..|-+-.|+
T Consensus 140 ~g~~~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~d-------------g~PtY~~a~v-vDD~~~githvir 205 (468)
T 1j09_A 140 RGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSD-------------GYPTYHLANV-VDDHLMGVTDVIR 205 (468)
T ss_dssp TTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECTT-------------SCBCHHHHHH-HHHHHTTCCEEEE
T ss_pred cCCCceEEEecCCCCceEEEeccceeEeecccCCCCeEEEecC-------------CCeeehhHHH-HHHHHCCCCeEEE
Confidence 3321 11 11123456799999873 8999999875 4556667544444
Q ss_pred eecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHh-cCchHHHHHHhhcCCC
Q 014658 125 GGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYR 199 (421)
Q Consensus 125 ~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~~~~ 199 (421)
|.| |+.+.+.|. .+++.++ + .|.|..+++ .+|.|||||.||+ ++.++.+. |.|+++|-|+..-.+.
T Consensus 206 --G~D----~~~~t~~q~~l~~alg~~~-p-~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~ 276 (468)
T 1j09_A 206 --AEE----WLVSTPIHVLLYRAFGWEA-P-RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFS 276 (468)
T ss_dssp --EGG----GGGGHHHHHHHHHHHTCCC-C-EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred --Chh----hhhhHHHHHHHHHHcCCCC-C-eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccC
Confidence 799 666666665 5565444 3 457888864 7999999999998 88888874 9999999999874443
Q ss_pred C--C-cccCHHHHHH
Q 014658 200 S--P-LNYSVLQLDS 211 (421)
Q Consensus 200 ~--d-~~fs~e~l~~ 211 (421)
. + ..|+.+.+.+
T Consensus 277 ~~~~~~~~~~~el~~ 291 (468)
T 1j09_A 277 MPDGREIFTLEEFIQ 291 (468)
T ss_dssp CTTCCSCCCHHHHHH
T ss_pred CcccccCCCHHHHHh
Confidence 2 2 4578665543
No 32
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.22 E-value=6.8e-11 Score=121.31 Aligned_cols=174 Identities=20% Similarity=0.260 Sum_probs=115.7
Q ss_pred CCCCCCCCCccc---------cccccHHHHHHHHHHHHHcCCeeee-----------------------CC---cEEEec
Q 014658 2 ADLQCLPPTYQP---------RVSDHMEQIKDMITQIINNDCAYVV-----------------------EG---DVFFAV 46 (421)
Q Consensus 2 ~~Lnv~~p~~~~---------r~t~~i~~i~~~i~~L~~~g~aY~~-----------------------~~---~vyf~v 46 (421)
+.|||. +|--| +.|++.+...+++++|+++|+||.- +| .+.|.+
T Consensus 85 ~wlGl~-wDe~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~ 163 (488)
T 3afh_A 85 RWCGLD-WDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKV 163 (488)
T ss_dssp HHTTCC-CSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECC
T ss_pred HHcCCC-CCcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEEC
Confidence 458887 56654 8999999999999999999999961 11 122222
Q ss_pred cCCCCccccccccchhhhCCCCccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEee
Q 014658 47 EKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 126 (421)
Q Consensus 47 ~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~g 126 (421)
. -| ....+|+..|. + .....+..||+|||.. |.|.+|+.|. .-.+..|-+-.| =
T Consensus 164 ~----~~---~~~~~D~v~G~-~--~~~~~~~~D~Vl~R~D-------------G~PtY~lA~v-VDD~~mgIThVi--R 217 (488)
T 3afh_A 164 L----PG---KTSFEDLLKGY-M--EFDNSTLEDFIIMKSN-------------GFPTYNFAVV-VDDHLMRISHVF--R 217 (488)
T ss_dssp C----SS---EEEEEETTTEE-E--EEEGGGSCCEEEECTT-------------SCBCHHHHHH-HHHHHTTCSEEE--E
T ss_pred C----CC---ceeEEecccee-E--eecCCCCCCeEEEecC-------------CCeehhhHHH-HHHHhcCCCEEE--E
Confidence 1 00 01122222221 1 1122344699999973 8889998775 445566644444 3
Q ss_pred cccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHH-hcCchHHHHHHhhcCCC--
Q 014658 127 GIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYR-- 199 (421)
Q Consensus 127 G~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~~~~-- 199 (421)
|.| |+.|.+.|. .|++.++ + .|.|..+++ .+|.||||+.|+ +++.++.+ .|.|+++|-|+..-.+.
T Consensus 218 G~D----~l~~tp~q~~l~~aLG~~~-P-~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~ 290 (488)
T 3afh_A 218 GED----HLSNTPKQLMIYEAFGWEA-P-VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVE 290 (488)
T ss_dssp EGG----GGGGHHHHHHHHHHHTCCC-C-EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCS
T ss_pred chh----hhhCHHHHHHHHHHcCCCC-C-eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCc
Confidence 899 788887776 4554444 3 458988875 699999999999 68999887 49999999999874332
Q ss_pred CCcccCHHHH
Q 014658 200 SPLNYSVLQL 209 (421)
Q Consensus 200 ~d~~fs~e~l 209 (421)
.+--||.+.+
T Consensus 291 ~~e~~s~~e~ 300 (488)
T 3afh_A 291 GDEIFTIEEK 300 (488)
T ss_dssp SCSCCCHHHH
T ss_pred ccccCCHHHH
Confidence 2234555544
No 33
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.21 E-value=4.9e-11 Score=125.09 Aligned_cols=163 Identities=20% Similarity=0.277 Sum_probs=112.1
Q ss_pred CCCCCCCCCccc---------cccccHHHHHHHHHHHHHcCCeeee-----------------------CC---cEEEec
Q 014658 2 ADLQCLPPTYQP---------RVSDHMEQIKDMITQIINNDCAYVV-----------------------EG---DVFFAV 46 (421)
Q Consensus 2 ~~Lnv~~p~~~~---------r~t~~i~~i~~~i~~L~~~g~aY~~-----------------------~~---~vyf~v 46 (421)
..|||. ++--| +.|++.+...+++++|+++|+||.- +| .+.|.+
T Consensus 189 ~wlGl~-~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~ 267 (592)
T 3al0_C 189 RWCGLD-WDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKV 267 (592)
T ss_dssp HHTTCC-CSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECC
T ss_pred HHcCCC-CCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEEC
Confidence 457886 56654 8999999999999999999999971 12 233333
Q ss_pred cCCCCccccccccchhhhCCCCccccccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEee
Q 014658 47 EKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 126 (421)
Q Consensus 47 ~~~~~Yg~ls~~~~~~~~~g~~v~~~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~g 126 (421)
. -| ....+|+..|. + .....+..||+|||.. |.|.||+.|. ...+..|-+-.|+
T Consensus 268 ~----~~---~~~~~D~v~G~-~--~~~~~~~~D~Vl~R~d-------------g~ptY~~a~v-vDD~~~githvir-- 321 (592)
T 3al0_C 268 L----PG---KTSFEDLLKGY-M--EFDNSTLEDFIIMKSN-------------GFPTYNFAVV-VDDHLMRISHVFR-- 321 (592)
T ss_dssp C----SS---CCEECCTTTCS-E--ECCSSSSCCEEEECTT-------------SCCCHHHHHH-HHHHHTTCSBCCE--
T ss_pred C----CC---Cceeeecccce-e--eeccccCCCeEEEcCC-------------CCeehhhHHH-HHHHhcCCCeEEE--
Confidence 2 01 11223333332 1 1123445799999963 8999998875 4555666544443
Q ss_pred cccCcCcchHHHHHHHH---hccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHH-hcCchHHHHHHhhcCC
Q 014658 127 GIDLIFPHHENEIAQSC---AACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY 198 (421)
Q Consensus 127 G~Dli~pH~~~~~a~~~---a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~~~ 198 (421)
|.| |+.|.+.|.. |++.++ +.+ .|..+++ .+|.|||||.|+ +++.++.+ .|.|+++|.|+..-.+
T Consensus 322 G~D----~~~~t~~q~~l~~alg~~~-P~~-~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 322 GED----HLSNTPKQLMIYEAFGWEA-PVF-MHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGW 391 (592)
T ss_dssp EGG----GGGGHHHHHHHHTTTTCCC-CBC-CEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTTB
T ss_pred chh----hHhCHHHHHHHHHHhCCCC-CeE-EEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 799 7777777764 443333 444 7888874 699999999999 68999987 5999999999987433
No 34
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.69 E-value=1.4e-07 Score=96.37 Aligned_cols=183 Identities=20% Similarity=0.219 Sum_probs=110.5
Q ss_pred CCCCCCCCCCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC--------------CCccc----cccccchh
Q 014658 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PNYGR----LSGQRLEN 62 (421)
Q Consensus 1 m~~Lnv~~p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~--------------~~Yg~----ls~~~~~~ 62 (421)
|+.|||.++....+.|+|++.+.+++++|+++|+||.- ||+... +.|-. ++......
T Consensus 84 l~wlGl~~d~~~~~qS~r~~~y~~~~~~Li~~G~aY~C-----~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~ 158 (490)
T 4g6z_A 84 MAWLGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYPC-----YMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPE 158 (490)
T ss_dssp HHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEEE-----CC-------------------CCCCTTCCCTTCCCCC
T ss_pred HHHcCCCCCCCCcccccCHHHHHHHHHHHHHCCCEEeC-----CCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhh
Confidence 35689986555679999999999999999999999942 221110 11211 11000000
Q ss_pred hhCCCC------------ccc--------cccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCce
Q 014658 63 NRAGER------------VAV--------DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFD 122 (421)
Q Consensus 63 ~~~g~~------------v~~--------~~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~D 122 (421)
...|.+ +.+ ...-..-.||+|.|. .|.|.+|..| +.-....|-+-.
T Consensus 159 ~~~g~~~~~R~k~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~-------------DG~ptY~lA~-vVDD~~mgIThV 224 (490)
T 4g6z_A 159 PPAGVAPVLRFRNPLTGTVAWDDAVKGRVEISNEELDDLVVARP-------------DGTPMYNFCV-VVDDLDMGITHV 224 (490)
T ss_dssp CCTTCCCEEEECCCCSSEEEEEETTTEEEEEEGGGCCCCEEECT-------------TSCBCHHHHH-HHHHHHTTCCEE
T ss_pred hhcCCCceEEEecCCCCcEEEEEeeeeeeeeccccCCCeEEEee-------------CCCccchhHH-HHHHHhcCCCEE
Confidence 001110 000 000011235555554 3668889754 344445563333
Q ss_pred EEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHH-hcCchHHHHHHhhc-
Q 014658 123 IHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA- 196 (421)
Q Consensus 123 ih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~-~yg~D~lR~~ll~~- 196 (421)
+=|.| |..+.|-|. .|++.++| .+.|..+++ .+|.||||+.|. +++.++.+ .|.|++++-|++.-
T Consensus 225 --iRG~D----~l~~tprq~~l~~aLG~~~P--~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG 295 (490)
T 4g6z_A 225 --IRGDD----HVNNTPRQINILRALGGEVP--VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLG 295 (490)
T ss_dssp --EEEGG----GGGGHHHHHHHHHHTTCCCC--EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSS
T ss_pred --Eeccc----cccChHHHHHHHHHcCCCCC--eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhC
Confidence 33899 777777775 45544443 358988876 589999999997 78888876 49999999999874
Q ss_pred -CCCCCcccCHHHHHH
Q 014658 197 -HYRSPLNYSVLQLDS 211 (421)
Q Consensus 197 -~~~~d~~fs~e~l~~ 211 (421)
+....--||.+.+.+
T Consensus 296 ~s~~~~e~~s~~eli~ 311 (490)
T 4g6z_A 296 WSHGDAEIFTREQFVE 311 (490)
T ss_dssp BCCTTCCCCCHHHHHH
T ss_pred CCCCCccccCHHHHHh
Confidence 333334578776654
No 35
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.40 E-value=2.8e-06 Score=87.19 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=96.2
Q ss_pred cccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccC-------------CCCccc----cccccc-hhhhCCCC--c--
Q 014658 12 QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGR----LSGQRL-ENNRAGER--V-- 69 (421)
Q Consensus 12 ~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~-------------~~~Yg~----ls~~~~-~~~~~g~~--v-- 69 (421)
.-+-|++.+...+++++|+++|.||. .|++.. .+.|-. |+.... +....|.+ +
T Consensus 84 ~~~QS~r~~~y~~~~~~L~~~g~aY~-----c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~ 158 (498)
T 2ja2_A 84 PYRQSQRAEIYRDVLARLLAAGEAYH-----AFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRL 158 (498)
T ss_dssp CCBGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEE
T ss_pred CeeeecCHHHHHHHHHHHHHcCCeEE-----eCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEE
Confidence 56789999999999999999999995 222111 112221 111000 01122321 0
Q ss_pred ccc---------------ccccCCCcccccccccCCCCcccCCCCCCCCCCchhhHHHHHhhcCCCceEEeecccCcCcc
Q 014658 70 AVD---------------SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPH 134 (421)
Q Consensus 70 ~~~---------------~~K~~p~DF~LWk~~~~~~~~w~spwg~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH 134 (421)
..+ ..-..-.||+|.|+ .|.|-+|..| +.-....| ++.-+=|.| |
T Consensus 159 k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~-------------Dg~ptY~lA~-vVDD~~mg--ithviRG~D----~ 218 (498)
T 2ja2_A 159 RMPDDDLAWNDLVRGPVTFAAGSVPDFALTRA-------------SGDPLYTLVN-PCDDALMK--ITHVLRGED----L 218 (498)
T ss_dssp CCCSSCEEEEETTTEEEEECTTCSCCCBSBCT-------------TSCBCHHHHH-HHHHHHTT--CCEEEEEGG----G
T ss_pred ECCCCceEEEecccceEeecccccCcceeEcc-------------CCCcchhhHH-HHHhhhcC--CCEEEEChh----h
Confidence 000 00012246676665 3778888755 34444555 444456899 5
Q ss_pred hHHHHHH---HHhc-----cCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHh-cCchHHHHHHhhc
Q 014658 135 HENEIAQ---SCAA-----CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA 196 (421)
Q Consensus 135 ~~~~~a~---~~a~-----~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~-yg~D~lR~~ll~~ 196 (421)
+.+.+.| ..++ +.++ + .+.|..+++ .+|.||||+.|+ +++.++.+. |.|+++|.|+..-
T Consensus 219 ~~~t~~q~~l~~aL~~~g~g~~~-P-~~~h~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 219 LPSTPRQLALHQALIRIGVAERI-P-KFAHLPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp GGGHHHHHHHHHHHHHTTSCCCC-C-EEEEECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTS
T ss_pred hhccHHHHHHHHHHHhhcCCCCC-C-eEEEeeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHh
Confidence 5555533 3555 4444 4 447888875 689999999999 588888874 9999999999874
No 36
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=97.89 E-value=7.8e-06 Score=79.72 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=57.4
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCchHH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLAL 189 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~D~l 189 (421)
.|+.+.+-..+|+..+|.|+.+ |++.-.-....++.++ + +.+|+.++. .+|+|||||.||.|.+.| ++|++
T Consensus 161 lqaaD~l~~~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~-p-~~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i 232 (323)
T 2cyb_A 161 MQALDIAHLGVDLAVGGIDQRK-IHMLARENLPRLGYSS-P-VCLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEV 232 (323)
T ss_dssp HHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHH
T ss_pred HHHHHHHhcCCCEEEechhhHH-HHHHHHHHHHhcCCCC-c-eEEecCcccCCCCCcccCCcCceeCCCC-----CHHHH
Confidence 4555555557999999999865 6555444444443333 2 347778885 799999999999999987 59999
Q ss_pred HHHHhhc
Q 014658 190 RHFLISA 196 (421)
Q Consensus 190 R~~ll~~ 196 (421)
|..++++
T Consensus 233 ~~Ki~~a 239 (323)
T 2cyb_A 233 ERKIRKA 239 (323)
T ss_dssp HHHHHTS
T ss_pred HHHHHhc
Confidence 9999875
No 37
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.65 E-value=0.00067 Score=70.03 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCCCCCchhhHHHHHhhcCCCceEEeecccCcCcchHHHHHHH---HhccCCCCCcEEEeeeeee-eCCcccccccCCcc
Q 014658 100 PGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFF 175 (421)
Q Consensus 100 ~grPgWhiecsam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~---~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i 175 (421)
.|.|.+|..| +.-....| ++.-+=|.| |..+.+.|. .|++.++| .|.|+.+++ .+|.|+||+.|. .
T Consensus 212 dg~PtY~fA~-vVDD~~mg--ITHViRG~D----~l~sTp~q~~l~~alg~~~P--~y~H~pli~~~~g~kLSKR~~~-~ 281 (512)
T 4gri_A 212 DGLPTYHLAN-VVDDYLMK--ITHVLRAQE----WVSSGPLHVLLYKAFKWKPP--IYCHLPMVMGNDGQKLSKRHGS-T 281 (512)
T ss_dssp TSCBCHHHHH-HHHHHHTT--CSEEEEEGG----GGGGHHHHHHHHHHHTCCCC--EEEEECCCBCTTSSBCCTTTSC-C
T ss_pred CCcccccccc-eecccccC--Cceeccccc----cccccHHHHHHHHHcCCCCC--eEEecchhccccccccCccccc-c
Confidence 4678899755 45455666 444444799 555555543 45555444 458999887 589999999987 5
Q ss_pred CHHHHHH-hcCchHHHHHHhh-c-CCCC-CcccCHHHHHHH
Q 014658 176 TIRQITE-RYHPLALRHFLIS-A-HYRS-PLNYSVLQLDSA 212 (421)
Q Consensus 176 ~~~dll~-~yg~D~lR~~ll~-~-~~~~-d~~fs~e~l~~~ 212 (421)
++.++.+ .|-|+++.=|++. + ++.. .--||.+.|.+.
T Consensus 282 ~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eifs~~eli~~ 322 (512)
T 4gri_A 282 ALRQFIEDGYLPEAIINYVTLLGWSYDDKREFFSKNDLEQF 322 (512)
T ss_dssp BHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCCCHHHHHHH
T ss_pred cHHHHHHcCCChHHHHHHHHHhCCCCcccchhhhHHHHHHH
Confidence 6777765 5999999988876 3 4443 346888877664
No 38
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=97.23 E-value=0.00014 Score=70.70 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHhhcCC----CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCc
Q 014658 112 MSAHYLSS----KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHP 186 (421)
Q Consensus 112 m~~~~lg~----~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~ 186 (421)
|+.+++-. ..||.+||.|... |.+.-.=...-++..++ +-+++..|. .+|.|||||.||.|.+.| ++.++
T Consensus 179 QaaDil~l~~~~~~~v~~gG~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp 253 (322)
T 2yxn_A 179 QGYDFACLNKQYGVVLCIGGSDQWG-NITSGIDLTRRLHQNQV--FGLTVPLITKADGTKFGKTEGGAVWLDP--KKTSP 253 (322)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTEETTEECBSST--TTSCH
T ss_pred HHHHHHHHhccCCceEEecCchhHH-HHHHHHHHHHHhCCCCc--eeeccCccCCCCcccccCCCCCeeeccC--CCCCH
Confidence 44444434 7899999999765 66655444444444332 334556665 599999999999999888 67788
Q ss_pred hHHHHHHhhc
Q 014658 187 LALRHFLISA 196 (421)
Q Consensus 187 D~lR~~ll~~ 196 (421)
+.++=++.+.
T Consensus 254 ~~~~~ki~~~ 263 (322)
T 2yxn_A 254 YKFYQFWINT 263 (322)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhCC
Confidence 8888777653
No 39
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=97.15 E-value=0.00028 Score=71.23 Aligned_cols=77 Identities=21% Similarity=0.155 Sum_probs=54.5
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCc-ccccccCCccCHHHHHHhcCchHH
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQITERYHPLAL 189 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~-KMSKSlGN~i~~~dll~~yg~D~l 189 (421)
|+.+++-...|+..||.|.. +|.+.-.=....++..+ + +.+++.+|. .+|. |||||.||.|.+.| +|+.+
T Consensus 179 QaaDil~l~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~-~-~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i 250 (432)
T 1h3f_A 179 QAYDSVAIRADVEMGGTDQR-FNLLVGREVQRAYGQSP-Q-VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAM 250 (432)
T ss_dssp HHHHHHHHTCSEEEEEGGGH-HHHHHHHHHHHHTTCCC-C-EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHH
T ss_pred HhhhhhhcCccEEEechHHH-HHHHHHHHHHHHhCCCC-c-eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHH
Confidence 44444333589999999987 57765555555554433 2 446667775 6896 99999999999887 88888
Q ss_pred HHHHhhc
Q 014658 190 RHFLISA 196 (421)
Q Consensus 190 R~~ll~~ 196 (421)
+=++++.
T Consensus 251 ~~Ki~~~ 257 (432)
T 1h3f_A 251 FKKLMRV 257 (432)
T ss_dssp HHHHHTS
T ss_pred HHHHhCC
Confidence 8777764
No 40
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=97.09 E-value=0.00022 Score=70.17 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=44.9
Q ss_pred HHHhhcCC----CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcCc
Q 014658 112 MSAHYLSS----KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHP 186 (421)
Q Consensus 112 m~~~~lg~----~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg~ 186 (421)
|+.+++-. ..|+..||.|... |.+.-.=...-++..++ +.+++.+|. .+|.|||||.||.|.+.| ++-+|
T Consensus 198 QAaDil~l~~~~~~~i~p~G~DQ~~-~i~l~rdla~r~n~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp 272 (356)
T 2pid_A 198 QAYDFYYLFQRYGCRVQLGGSDQLG-NIMSGYEFINKLTGEDV--FGITVPLITSTTGAKLGKSAGNAVWLNR--DKTSP 272 (356)
T ss_dssp HHHHHHHHHHHHCCCEEEEEGGGHH-HHHHHHHHHHHHSSCCC--EEEEECCCC-------------CCBSST--TTSCH
T ss_pred HHHHHHHHhccCCCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcccccCCCCCeeeccC--CCCCH
Confidence 44554434 7899999999754 66655554444544332 335666765 699999999999999887 56788
Q ss_pred hHHHHHHhhc
Q 014658 187 LALRHFLISA 196 (421)
Q Consensus 187 D~lR~~ll~~ 196 (421)
+.++=++++.
T Consensus 273 ~~i~~ki~~~ 282 (356)
T 2pid_A 273 FELYQFFVRQ 282 (356)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHcC
Confidence 8888887763
No 41
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=97.08 E-value=0.00034 Score=70.34 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=54.7
Q ss_pred HHHhhcCC----CceEEeecccCcCcchHHHHHHHHhc-cCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcC
Q 014658 112 MSAHYLSS----KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYH 185 (421)
Q Consensus 112 m~~~~lg~----~~Dih~gG~Dli~pH~~~~~a~~~a~-~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg 185 (421)
|+++++-. ..|+..||.|..+ |.+.-.=...-+ +..++ +-+++.+|+ .+|.|||||.||.|.+.| ++.+
T Consensus 174 QaaD~l~l~~~~~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~~l~~pll~~ldG~KMSKS~~naI~L~d--~~ts 248 (420)
T 1jil_A 174 QAIDFGHLNRELNCKIQVGGSDQWG-NITSGIELMRRMYGQTDA--YGLTIPLVTKSDGKKFGKSESGAVWLDA--EKTS 248 (420)
T ss_dssp HHHHHHHHHHHHCEEEEEEEGGGHH-HHHHHHHHHHHHHCCCCC--EEEEECCCBCTTSCBTTBCSSSBCBSST--TTSC
T ss_pred HHHHHHHHhccCCCcEEeccHHHHH-HHHHHHHHHHHhcCCCCe--eEeecccccCCccccccCCCCCeEecCC--CCCC
Confidence 45554434 7899999999765 665554444444 44332 345667775 699999999999998877 5667
Q ss_pred chHHHHHHhh
Q 014658 186 PLALRHFLIS 195 (421)
Q Consensus 186 ~D~lR~~ll~ 195 (421)
|+.++=++++
T Consensus 249 p~~i~~ki~~ 258 (420)
T 1jil_A 249 PYEFYQFWIN 258 (420)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 7777767665
No 42
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=97.06 E-value=0.0003 Score=70.66 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=53.8
Q ss_pred HHHhhcCC----CceEEeecccCcCcchHHHHHHHHhc-cCCCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHhcC
Q 014658 112 MSAHYLSS----KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYH 185 (421)
Q Consensus 112 m~~~~lg~----~~Dih~gG~Dli~pH~~~~~a~~~a~-~~~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~yg 185 (421)
|+++++-. ..|+..||.|..+ |.+.-+=...-+ +..++ +-+++.+++ .+|.|||||.||.|.+.| ++.+
T Consensus 173 QaaDil~l~~~~~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~~--~~lt~pll~~ldG~KMSKS~~naI~L~d--~~ts 247 (419)
T 2ts1_A 173 QAYDFLRLYETEGCRLQIGGSDQWG-NITAGLELIRKTKGEARA--FGLTIPLVTKADGTKFGKTESGTIWLDK--EKTS 247 (419)
T ss_dssp HHHHHHHHHHHHCEEEEEEEGGGHH-HHHHHHHHHHHHHC--CC--EEEEECCCCCTTSCCTTCCSSCCCBSST--TTSC
T ss_pred HHHHHHHHhccCCCcEEeccHHHHH-HHHHHHHHHHHhcCCCCe--eecccccccCCCcccccCCCCCeEecCC--CCCC
Confidence 45554434 7899999999765 655544444444 33332 345667765 699999999999998877 5667
Q ss_pred chHHHHHHhh
Q 014658 186 PLALRHFLIS 195 (421)
Q Consensus 186 ~D~lR~~ll~ 195 (421)
|+.++=++++
T Consensus 248 p~~i~qki~~ 257 (419)
T 2ts1_A 248 PYEFYQFWIN 257 (419)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 7777777765
No 43
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=97.01 E-value=0.00039 Score=68.04 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=54.2
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhc---cC---CCCCcEEEeeeeee-eCCcccccccCCccCHHHHHHh
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA---CQ---DSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER 183 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~---~~---~~~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~ 183 (421)
-|+.+++=+..|+..+|.|... |.+.-+-....+ ++ ..|.-+..|+..|. .+|.|||||.||.|.+.|
T Consensus 144 LQAaDil~~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n~I~L~d---- 218 (340)
T 2g36_A 144 LQAADILIYKAEGVPVGEDQVY-HIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGNIINLEI---- 218 (340)
T ss_dssp HHHHHHHTTTCSEEEECGGGHH-HHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTCCCBTTC----
T ss_pred HHHhhHHHhCCCEEEcccchHH-HHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCCeEeeeC----
Confidence 4666666667899999999765 665444333332 23 12232334445555 689999999999999887
Q ss_pred cCchHHHHHHhhc
Q 014658 184 YHPLALRHFLISA 196 (421)
Q Consensus 184 yg~D~lR~~ll~~ 196 (421)
+++.++=.+.++
T Consensus 219 -sp~~i~~Ki~~a 230 (340)
T 2g36_A 219 -SEKELEQTILRM 230 (340)
T ss_dssp -CHHHHHHHHHTC
T ss_pred -CHHHHHHHHHhC
Confidence 788888777764
No 44
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=96.99 E-value=0.00042 Score=69.81 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=54.8
Q ss_pred HHHhhcCC----CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCC-ccCHHHHHHhcC
Q 014658 112 MSAHYLSS----KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYH 185 (421)
Q Consensus 112 m~~~~lg~----~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN-~i~~~dll~~yg 185 (421)
|+.+++-. ..|+..||.|..+ |.+.-+=...-++..++ +-+++-+|. .+|.|||||.|| .|.+.| ++.+
T Consensus 175 QaaDil~l~~~~~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~--~~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~ts 249 (432)
T 2jan_A 175 QANDYVELHRRHGCTLQIGGADQWG-NIIAGVRLVRQKLGATV--HALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTS 249 (432)
T ss_dssp HHHHHHHHHHHHCCCEEEECSTTHH-HHHHHHHHHHHHHCCCC--EEEECCCCBCTTSCBTTBCSSSCBCBSST--TTSC
T ss_pred HHHHHHHHhccCCCcEEeccHHHHH-HHHHHHHHHHHhCCCCc--cccccccccCCCcCcCCCCCCCCeEEccC--CCCC
Confidence 44454433 7899999999765 65544444444444332 445666665 699999999999 898876 5678
Q ss_pred chHHHHHHhhc
Q 014658 186 PLALRHFLISA 196 (421)
Q Consensus 186 ~D~lR~~ll~~ 196 (421)
|+.++=++++.
T Consensus 250 p~~i~qki~~~ 260 (432)
T 2jan_A 250 PYAWYQYFVNT 260 (432)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcC
Confidence 88887777663
No 45
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=96.82 E-value=0.00058 Score=68.06 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=49.0
Q ss_pred CceEEeecccCcCcchHHHHHHHHhc---c---C-----CC----CCcEEEeeeeee-eCCcccccccCCccCHHHHHHh
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAA---C---Q-----DS----NVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER 183 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~---~---~-----~~----~~~~~~h~g~l~-~~G~KMSKSlGN~i~~~dll~~ 183 (421)
..|+..||.|. .+|.+.-+=+..-. + + .| .+.+.+++.+|+ .+|.|||||.||.|.+.| +.
T Consensus 232 ~~~i~~gG~DQ-~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQ-YGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP--YQ 308 (392)
T ss_dssp CEEEEEECTTC-HHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST--TT
T ss_pred CccEEecCcch-HhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC--CC
Confidence 58999999998 55655443332211 1 0 01 123556767776 699999999999998876 45
Q ss_pred cCchHHHHHHhhc
Q 014658 184 YHPLALRHFLISA 196 (421)
Q Consensus 184 yg~D~lR~~ll~~ 196 (421)
-+|+.++=++++.
T Consensus 309 tsp~~i~qki~~~ 321 (392)
T 1y42_X 309 TSVFDFYGYFVRR 321 (392)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC
Confidence 6777777666653
No 46
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=96.76 E-value=0.0006 Score=67.57 Aligned_cols=76 Identities=18% Similarity=0.000 Sum_probs=44.0
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCcccccccCC-ccCHHHHHHhcCchHH
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYHPLAL 189 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~KMSKSlGN-~i~~~dll~~yg~D~l 189 (421)
|+.+++-+..|+..+|.|... |.+.-+-....++..+ + +.+|+.+|. .+|.|||||.|| .|.+.| +++.+
T Consensus 170 QaaDil~~~a~~v~~G~DQ~~-~~~l~rdl~~r~~~~~-p-~~l~~pll~gldG~KMSKS~~ns~I~L~d-----~p~~i 241 (372)
T 1n3l_A 170 QALDEEYLKVDAQFGGIDQRK-IFTFAEKYLPALGYSK-R-VHLMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDV 241 (372)
T ss_dssp HHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCCCSSCC-------CCSCBTTC-----CHHHH
T ss_pred hhccHHHhcCCEEEcChhHHH-HHHHHHHHHHHcCCCC-C-EEEecCccCCCCcccccCCCCCCeEeccC-----CHHHH
Confidence 555555456899999999654 5554444444443322 2 346777775 799999999999 688765 26777
Q ss_pred HHHHhh
Q 014658 190 RHFLIS 195 (421)
Q Consensus 190 R~~ll~ 195 (421)
+=.+.+
T Consensus 242 ~kKi~~ 247 (372)
T 1n3l_A 242 KKKLKK 247 (372)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 777665
No 47
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.00073 Score=67.49 Aligned_cols=77 Identities=17% Similarity=0.015 Sum_probs=41.7
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eC-CcccccccCCc-cCHHHHHHhcCch
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-NEKMSKSLGNF-FTIRQITERYHPL 187 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~-G~KMSKSlGN~-i~~~dll~~yg~D 187 (421)
.|+.+++-..+|+..+|.|+.. |.+.-+-....++..+ + +.+|+.+|. .+ |.|||||.||. |.+.| +++
T Consensus 173 lQaaD~l~~~~~~v~~G~DQ~~-~~~l~rdl~~r~~~~~-p-~~l~~pll~gl~~G~KMSKS~~ns~I~L~D-----~p~ 244 (394)
T 2dlc_X 173 MQALDEQFLDVDCQFGGVDQRK-IFVLAEENLPSLGYKK-R-AHLMNPMVPGLAQGGKMSASDPNSKIDLLE-----EPK 244 (394)
T ss_dssp HHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHGGGGTCCC-C-EEEEECCCCCCC----------CCSCBTTC-----CHH
T ss_pred HhhccHhhhCCCEEecCccHHH-HHHHHHHHHHHcCCCC-C-EEEecccccCCCCCCcCCCCCCCCEEeccC-----CHH
Confidence 3555555567899999999644 5544444444444332 2 446777775 68 99999999996 87765 356
Q ss_pred HHHHHHhh
Q 014658 188 ALRHFLIS 195 (421)
Q Consensus 188 ~lR~~ll~ 195 (421)
.+|=-+.+
T Consensus 245 ~i~kKI~k 252 (394)
T 2dlc_X 245 QVKKKINS 252 (394)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666555
No 48
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=96.43 E-value=0.00066 Score=65.90 Aligned_cols=79 Identities=27% Similarity=0.173 Sum_probs=49.4
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHH--HHHHHhc-cCC--CCCcEEE--eeeeee-eCCcccccccCCccCHHHHHH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENE--IAQSCAA-CQD--SNVSYWM--HNGHVT-NNNEKMSKSLGNFFTIRQITE 182 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~--~a~~~a~-~~~--~~~~~~~--h~g~l~-~~G~KMSKSlGN~i~~~dll~ 182 (421)
-|+.+++-+..|+..+|.|... |++.- +|...-. +++ +.+...+ ++.+|. .+|.|||||.||.|.+.|
T Consensus 130 LQAaDil~~~~~~vpvG~DQ~~-hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n~I~L~d--- 205 (322)
T 3tzl_A 130 LMAADILLFDTRIVPVGKDQIQ-HVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFS--- 205 (322)
T ss_dssp HHHHHHHHTTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTCCCBSSC---
T ss_pred HHHHHHHHhCCcEEEeccchHH-HHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCCceecCC---
Confidence 3566665567899999999765 65543 3332211 122 1122312 234554 699999999999998765
Q ss_pred hcCchHHHHHHhh
Q 014658 183 RYHPLALRHFLIS 195 (421)
Q Consensus 183 ~yg~D~lR~~ll~ 195 (421)
+++.++=.+.+
T Consensus 206 --~p~~i~~KI~~ 216 (322)
T 3tzl_A 206 --SEKTLKKQISS 216 (322)
T ss_dssp --CHHHHHHHHHT
T ss_pred --CHHHHHHHHHh
Confidence 56777766665
No 49
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=96.20 E-value=0.0024 Score=63.08 Aligned_cols=77 Identities=17% Similarity=0.087 Sum_probs=51.4
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eC-----------------Ccccccc-c
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NN-----------------NEKMSKS-L 171 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~-----------------G~KMSKS-l 171 (421)
-|+.+++-+..|+..||.|... |++.-.-....++.+++ +.+|+.+|. .+ |.||||| .
T Consensus 168 LQaaDil~~~~~~v~~G~DQ~~-~~~l~rdla~r~~~~~p--~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~ 244 (364)
T 2cya_A 168 MQVSDIFYMDLDIALGGMDQRK-AHMLARDVAEKLGRKKP--VAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244 (364)
T ss_dssp HHHHHHHHTTCSEEEEEGGGHH-HHHHHHHHHTTTTCCCC--EEEEECCCBCSSCC----------------CBCCSSSG
T ss_pred HHHhhHHhcCCCEEeccchHHH-HHHHHHHHHHHcCCCCc--eeeccceeeCCCcccccccccccccccccccccCCCCC
Confidence 4556655567899999999765 66555554444443322 346767775 56 7999999 7
Q ss_pred CCccCHHHHHHhcCchHHHHHHhh
Q 014658 172 GNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 172 GN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
||.|.+.| +++.++=.+.+
T Consensus 245 ~~~I~L~d-----~p~~i~~Ki~~ 263 (364)
T 2cya_A 245 ETAVFVVD-----SDDDIRRKIRK 263 (364)
T ss_dssp GGSCBTTC-----CHHHHHHHHHT
T ss_pred CCEeeccC-----CHHHHHHHHHh
Confidence 89898766 36677666665
No 50
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=96.08 E-value=0.0036 Score=60.50 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=45.6
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC-cccccccCCccCHHHHHHhcCchH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN-EKMSKSLGNFFTIRQITERYHPLA 188 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G-~KMSKSlGN~i~~~dll~~yg~D~ 188 (421)
-|+.+++-...|+..||.|... |.+ .+.-.+ . + .-+.+|+..|. .+| .|||||.||.|.+.| +++.
T Consensus 154 LQaaDil~~~~~~v~~G~DQ~~-~~~--l~R~i~--~-~-~~~~~~~~~l~~l~G~~KMSKS~~~~I~L~d-----~~~~ 221 (314)
T 2zp1_A 154 MQVNTSHYLGVDVAVGGMEQRK-IHM--LARELL--P-K-KVVCIHNPVLTGLDGEGKMSSSKGNFIAVDD-----SPEE 221 (314)
T ss_dssp HHHHHHHHHTCSEEEEEGGGHH-HHH--HHHHHS--S-S-CCEEEEECCCBCTTSSSBCCTTTTCSCBTTC-----CHHH
T ss_pred HHHHhHHhhCCCEEEcChhHHH-HHH--HHHHhc--C-C-CcEEeeccccccCCcccccCCCCcceecCCC-----CHHH
Confidence 3555555446899999999766 432 222222 2 2 22447767776 689 799999999998765 3444
Q ss_pred HHHHHhh
Q 014658 189 LRHFLIS 195 (421)
Q Consensus 189 lR~~ll~ 195 (421)
+|==+.+
T Consensus 222 i~~KI~~ 228 (314)
T 2zp1_A 222 IRAKIKK 228 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5444444
No 51
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=96.04 E-value=0.0033 Score=62.19 Aligned_cols=78 Identities=17% Similarity=0.040 Sum_probs=48.9
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-e-CC-ccccccc-CCccCHHHHHHhcCc
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSL-GNFFTIRQITERYHP 186 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSl-GN~i~~~dll~~yg~ 186 (421)
-|+.+++-...|+..||.|..+ |++.-.-...-++.. +.-+.+|+.+|. + +| .|||||. ||.|.+.| ++
T Consensus 191 LQaaDil~l~ad~vpgG~DQ~~-~l~l~Rdla~r~~~~-~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~D-----~p 263 (373)
T 3vgj_A 191 MQCADIFFLNVDICQLGIDQRK-VNMLAREYCDIKKIK-KKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDD-----SE 263 (373)
T ss_dssp HHHHHHHHTTCSEECCBGGGHH-HHHHHHHHHHHHTCS-CCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTTC-----CH
T ss_pred HHHhcccccCCcEEEcchhhHH-HHHHHHHHHHHhCCC-CCceEEeCCeeecCCCCCCCCcCCCCCCeeecCC-----CH
Confidence 4566655556899999999765 665544444444332 233556777776 4 88 4999999 57887643 34
Q ss_pred hHHHHHHhh
Q 014658 187 LALRHFLIS 195 (421)
Q Consensus 187 D~lR~~ll~ 195 (421)
+.++==+.+
T Consensus 264 ~~i~~KI~k 272 (373)
T 3vgj_A 264 SDVNRKIKK 272 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 455544444
No 52
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=95.99 E-value=0.0018 Score=63.57 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=48.3
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhc---cCC--CCCcEEE-eeeeee-eCCc-ccccccCCccCHHHHHHh
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA---CQD--SNVSYWM-HNGHVT-NNNE-KMSKSLGNFFTIRQITER 183 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~---~~~--~~~~~~~-h~g~l~-~~G~-KMSKSlGN~i~~~dll~~ 183 (421)
|+.+++-+..|+..+|.|... |.+.-+-....+ ++. +-+...+ |+..|. .+|. |||||.||.|.+.|
T Consensus 154 QAaDil~~~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d---- 228 (351)
T 1yi8_B 154 QAADIAAFGATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD---- 228 (351)
T ss_dssp HHHHHHHHTCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC----
T ss_pred HHhhHHhcCCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC----
Confidence 444544456899999999765 655443333322 231 2223323 345554 5897 99999999888765
Q ss_pred cCchHHHHHHhh
Q 014658 184 YHPLALRHFLIS 195 (421)
Q Consensus 184 yg~D~lR~~ll~ 195 (421)
+++.++=.+.+
T Consensus 229 -~p~~i~~Ki~~ 239 (351)
T 1yi8_B 229 -SADEVARKVMG 239 (351)
T ss_dssp -CHHHHHHHHHT
T ss_pred -CHHHHHHHHHh
Confidence 26667666665
No 53
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=95.91 E-value=0.0031 Score=61.58 Aligned_cols=78 Identities=23% Similarity=0.149 Sum_probs=49.9
Q ss_pred HHHhhcCCCceEEeecccCcCcchHHHHHHHHhc---cCC--CCCcEEEee---eeee-eCC-cccccccCCccCHHHHH
Q 014658 112 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA---CQD--SNVSYWMHN---GHVT-NNN-EKMSKSLGNFFTIRQIT 181 (421)
Q Consensus 112 m~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~---~~~--~~~~~~~h~---g~l~-~~G-~KMSKSlGN~i~~~dll 181 (421)
|+.+++-+..|+..+|.|... |.+.-+-...-+ ++. +.+.. +|+ ..|. .+| .|||||.||.|.+.|
T Consensus 133 QaaDil~~~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P~~-~~~~~~p~l~gldG~~KMSKS~~n~I~L~d-- 208 (337)
T 2el7_A 133 QAADILIYKADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEPQA-LLNPEAPRVPGIDGKAKMSKSLGNTIGLLE-- 208 (337)
T ss_dssp HHHHHHHTTCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCCEE-ECCTTSCCCBCTTSSSBCCTTTTCCCBSSS--
T ss_pred HHhhHHhhCCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCCee-ecccccccccCCCCccccCCCCCCeeeCcC--
Confidence 455554457899999999765 665443333222 131 22233 343 3444 689 999999999998776
Q ss_pred HhcCchHHHHHHhhc
Q 014658 182 ERYHPLALRHFLISA 196 (421)
Q Consensus 182 ~~yg~D~lR~~ll~~ 196 (421)
+++.++=++.+.
T Consensus 209 ---~p~~i~~Ki~~a 220 (337)
T 2el7_A 209 ---PEESIWQKIQHL 220 (337)
T ss_dssp ---CHHHHHHHHHTC
T ss_pred ---CHHHHHHHHHhC
Confidence 377777777664
No 54
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=95.86 E-value=0.0034 Score=62.45 Aligned_cols=56 Identities=16% Similarity=-0.009 Sum_probs=28.3
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCCccCHHH
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGNFFTIRQ 179 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN~i~~~d 179 (421)
.|+..||.|..+ |.+.-.-...-++.+++ +.+|+-+|. ++| .|||||.||.|.+.|
T Consensus 225 ~~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~~~I~L~D 283 (395)
T 3i05_A 225 FCLIPQAIDQDP-YFRLTRDIAPRLGYLKP--AVIHSKFFPGLSGPKGKMSSSSGTAVLLTD 283 (395)
T ss_dssp EEEEEEEGGGHH-HHHHHHHTHHHHTCCCC--EEEEECCCCCC-------------CCBTTC
T ss_pred ceEEEeccchHH-HHHHHHHHHHHcCCCCc--eeeccccccCCCCCcccCCCCCCCcccCCC
Confidence 789999999764 66554444444444332 336767776 688 799999999997654
No 55
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=95.60 E-value=0.0097 Score=59.00 Aligned_cols=72 Identities=10% Similarity=-0.056 Sum_probs=46.6
Q ss_pred hcCCC-ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCc-ccccc-cCCccCHHHHHHhcCchHHHH
Q 014658 116 YLSSK-FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE-KMSKS-LGNFFTIRQITERYHPLALRH 191 (421)
Q Consensus 116 ~lg~~-~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~-KMSKS-lGN~i~~~dll~~yg~D~lR~ 191 (421)
++++. .++-.+|.|..+ |.+.-.-...-++.+++ +.+++.+|. ++|. ||||| .||.|.+.| +++.++=
T Consensus 219 il~~~~a~~VpvG~DQ~~-hl~l~Rdla~r~n~~~p--~~l~~~~l~gLdG~~KMSKSd~~~~I~L~D-----~p~~i~k 290 (386)
T 3hzr_A 219 FFSSPARCLVLDSIKNVQ-FHSIIDQIATTLNFIQP--TVLFHKMVPLLSGVTKFDIPSDHNSILLSD-----NAKQVER 290 (386)
T ss_dssp TCSSCCEEEEEEEGGGHH-HHHHHHHHHHHHTCCCC--EEEEECCCCCTTCTTCCCCCCTTTSCBTTC-----CHHHHHH
T ss_pred hhCCCCccccccccchHH-HHHHHHHHHHHcCCCCc--eEeecCeeeCCCCCCccCcCCCCCeeecCC-----CHHHHHH
Confidence 44654 555556999665 77665555555554433 446767776 6885 99999 899998765 5555554
Q ss_pred HHhh
Q 014658 192 FLIS 195 (421)
Q Consensus 192 ~ll~ 195 (421)
-+.+
T Consensus 291 KI~k 294 (386)
T 3hzr_A 291 KINK 294 (386)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 56
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=95.58 E-value=0.0048 Score=60.01 Aligned_cols=68 Identities=24% Similarity=0.076 Sum_probs=41.9
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEE--eeeeee-eCC--cccccccCC-c--cCH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWM--HNGHVT-NNN--EKMSKSLGN-F--FTI 177 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~--h~g~l~-~~G--~KMSKSlGN-~--i~~ 177 (421)
-|+.+++-+..|+..+|.|... |.+.-.-....++ +. +.+..++ |+..|. .+| .|||||.|| . |.+
T Consensus 128 LQaaDil~~~~~~vpvG~DQ~~-~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L 206 (328)
T 1i6k_A 128 LMAADILLYNTDIVPVGEDQKQ-HIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITL 206 (328)
T ss_dssp HHHHHHHTTTCSEEECCGGGHH-HHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBT
T ss_pred HHHHHHHHhCCCEEecccchHH-HHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeee
Confidence 4666666677999999999766 6654433333322 21 2233333 234444 678 899999999 5 765
Q ss_pred HH
Q 014658 178 RQ 179 (421)
Q Consensus 178 ~d 179 (421)
.|
T Consensus 207 ~d 208 (328)
T 1i6k_A 207 LD 208 (328)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 57
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=95.50 E-value=0.0053 Score=60.75 Aligned_cols=79 Identities=20% Similarity=0.100 Sum_probs=52.8
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCC-------CCCcEEEeeeeee-eCC------------------
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQD-------SNVSYWMHNGHVT-NNN------------------ 164 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~-------~~~~~~~h~g~l~-~~G------------------ 164 (421)
-|+.+++-+..|+..||.|.. +|++.-.-...-++.. .+.-+.+|+..|. .+|
T Consensus 171 LQaaDil~~~~~~vp~G~DQ~-~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~~~~~~~~~~ 249 (375)
T 2cyc_A 171 MQVADIFYQGVTIAHAGMDQR-KAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQ 249 (375)
T ss_dssp HHHHHHHHTTCSEEEEEGGGH-HHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeecccchHH-HHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccchhhhhhhhhh
Confidence 466666556789999999977 5776555444444330 1133457767776 677
Q ss_pred ccccccc-CCccCHHHHHHhcCchHHHHHHhh
Q 014658 165 EKMSKSL-GNFFTIRQITERYHPLALRHFLIS 195 (421)
Q Consensus 165 ~KMSKSl-GN~i~~~dll~~yg~D~lR~~ll~ 195 (421)
.|||||. +|.|.+.| +++.+|=.+.+
T Consensus 250 ~KMSKS~~~~~I~L~d-----~p~~i~~KI~~ 276 (375)
T 2cyc_A 250 MKMSKSKPYSAVFIHD-----SPEEIRQKLRK 276 (375)
T ss_dssp HBGGGSCGGGSCBTTC-----CHHHHHHHHHH
T ss_pred hcccCCCCCCeeccCC-----CHHHHHHHHHH
Confidence 8999999 78888765 36777767665
No 58
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=95.49 E-value=0.0098 Score=59.34 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=40.3
Q ss_pred hcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--ccccccc-CCccCHHH
Q 014658 116 YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSL-GNFFTIRQ 179 (421)
Q Consensus 116 ~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSl-GN~i~~~d 179 (421)
++++..++..||.|..+ |.+.-.=...-++.+++ .+ +|+.+|. ++| .|||||. ||.|.+.|
T Consensus 239 il~~~a~lvpvG~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~~~l~gLdG~~~KMSKS~~~~~I~L~D 303 (406)
T 3tze_A 239 IGKGAMCLVPAAVDQDP-FFRLARDKAKALGEKKP-SS-IYVSLLPDLKGVNRKMSASDPNSSIYLDD 303 (406)
T ss_dssp SCTTCEEEEEEEGGGHH-HHHHHHHHHHHHTCCCC-EE-EEECCCCCTTSCCCCSSCSCGGGSCBTTC
T ss_pred hccCCCeEEeeccchHH-HHHHHHHHHHHcCCCCc-ee-eccCcccCCCCCCcCCCCCCCCCcccCCC
Confidence 45666788999999765 66554444444443332 23 5667776 688 6999999 78887654
No 59
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=95.37 E-value=0.0082 Score=58.80 Aligned_cols=66 Identities=18% Similarity=0.025 Sum_probs=41.8
Q ss_pred HHHHhhcCC---CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-e-CC-ccccccc-CCccCHHH
Q 014658 111 AMSAHYLSS---KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSL-GNFFTIRQ 179 (421)
Q Consensus 111 am~~~~lg~---~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSl-GN~i~~~d 179 (421)
-|+.+++-. ..|+..||.|... |++.-.=....++.. ++ +.+|+.+|. + +| .|||||. ||.|.+.|
T Consensus 174 lQaaDil~~~~~~~~~~~~G~DQ~~-~i~l~Rdia~r~~~~-~p-~~~~~~~l~gL~dg~~KMSKS~~~~~I~L~d 246 (348)
T 2j5b_A 174 MQAADVFELVPEGIDICQLGIDQRK-VNMLAIEYANDRGLK-IP-ISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246 (348)
T ss_dssp HHHHHHHHSSTTCCSEECCBGGGHH-HHHHHHHHHHHTTCC-CC-EEEEBCCCCCTTCSSCCCSTTCGGGSCBTTC
T ss_pred HHHHHHHHHhcCCCcEEEeccChHH-HHHHHHHHHHHhCCC-Cc-eeecCccccCCCCcccccccCCCCCeEeecC
Confidence 345554433 6899999999764 665444444444333 23 346767775 5 67 7999999 68886543
No 60
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=95.33 E-value=0.008 Score=58.88 Aligned_cols=67 Identities=21% Similarity=0.109 Sum_probs=43.6
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CC--CCCcEEEe---eeeee-eCC--cccccccCC---ccC
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWMH---NGHVT-NNN--EKMSKSLGN---FFT 176 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~--~~~~~~~h---~g~l~-~~G--~KMSKSlGN---~i~ 176 (421)
-|+.+++-+..|+..+|.|... |.+.-.-....++ ++ +.+.. +| +..|. ++| .|||||.|| .|.
T Consensus 138 LQaaDil~~~a~~vpvG~DQ~~-~lel~Rdia~r~n~~yg~~f~~P~~-l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~ 215 (348)
T 2yy5_A 138 LMAGDILLYQPDIVPVGNDQKQ-HLELTRDLAQRIQKKFKLKLRLPQF-VQNKDTNRIMDLFDPTKKMSKSSKNQNGVIY 215 (348)
T ss_dssp HHHHHHHTTCCSEEECCGGGHH-HHHHHHHHHHHHHHHHCCCCCCCEE-ECCTTTTTCBCSSCTTSBCCSSCSCGGGCCB
T ss_pred HHHHHHHHhCccEEEecccHHH-HHHHHHHHHHHhhhhcccccCCCee-ecccccccccCCCCcchhcCCCCCCCCceEe
Confidence 4667777678999999999776 6655444433332 32 22334 34 24444 577 899999999 787
Q ss_pred HHH
Q 014658 177 IRQ 179 (421)
Q Consensus 177 ~~d 179 (421)
+.|
T Consensus 216 L~D 218 (348)
T 2yy5_A 216 LDD 218 (348)
T ss_dssp TTC
T ss_pred ecC
Confidence 654
No 61
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=95.23 E-value=0.012 Score=58.35 Aligned_cols=64 Identities=17% Similarity=0.019 Sum_probs=41.2
Q ss_pred HHHhhcCC-CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHH
Q 014658 112 MSAHYLSS-KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIR 178 (421)
Q Consensus 112 m~~~~lg~-~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~ 178 (421)
|+.+.+-. ..|+-.+|.|.. ||.+.-.-...-++.+.+ .. +++.+|. ++| .|||||.+| .|.+.
T Consensus 198 QaaDil~~~~a~~vpvG~DQ~-~hl~l~Rdla~r~n~~~p-~~-l~~~~l~gLdG~~~KMSKS~~ns~I~L~ 266 (392)
T 3jxe_A 198 QIAPTFFERKRCLIPAAIDQD-PYWRLQRDFAESLGYYKT-AA-LHSKFVPSLTSLSGKMSASKPETAIYLT 266 (392)
T ss_dssp HHGGGGSSSSCEEEEEEGGGH-HHHHHHHHHTGGGTSCCC-EE-EEECCCCCSSCSSSCCCTTSGGGCCBTT
T ss_pred HHhhHHhhcCCceeecccchH-HHHHHHHHHHHHcCCCCC-ee-eecccccCCCCCccccccCCCCCeeeCC
Confidence 55565544 367779999976 466655444444443332 23 4557775 687 599999999 77654
No 62
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=95.00 E-value=0.014 Score=58.78 Aligned_cols=58 Identities=12% Similarity=-0.077 Sum_probs=32.9
Q ss_pred CCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHHH
Q 014658 119 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 119 ~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 179 (421)
+..++..||.|..+ |.+.-.-....++...+ .. +|+.+|. .+| .|||||.|| .|.+.|
T Consensus 248 ~~~~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~~ll~gLdG~~~KMSKS~~nsaI~L~d 309 (432)
T 2ip1_A 248 KTPCLIPCAIDQDP-YFRVCRDVADKLKYSKP-AL-LHSRFFPALQGSTTKMSASDDTTAIFMTD 309 (432)
T ss_dssp TCCEEEEEEGGGHH-HHHHHHHHHHHHTSCCC-EE-EEECCCCCTTC--------CGGGCCBTTC
T ss_pred CCceEEEeccCcHH-HHHHHHHHHHHhCCCCc-ee-eccccccCCCCCccccCCCCCCCeEeccC
Confidence 45677889999765 55544444444443322 24 6667776 688 899999999 787655
No 63
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=94.62 E-value=0.016 Score=61.67 Aligned_cols=66 Identities=15% Similarity=-0.037 Sum_probs=42.9
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-e-CC-cccccccC-CccCH
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-N-NN-EKMSKSLG-NFFTI 177 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~-~G-~KMSKSlG-N~i~~ 177 (421)
.-|+.+++-...|+..||.|..+ |++.-.-...-++.. +.-+.+++.+|. . +| .|||||.+ |.|.+
T Consensus 173 lLQAaDil~~~ad~vpvG~DQ~~-~l~l~Rdla~r~n~~-~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L 242 (690)
T 3p0j_A 173 LMQCCDIFFLKADICQLGLDQRK-VNMLAREYCDLIGRK-LKPVILSHHMLAGLKQGQAKMSKSDPDSAIFM 242 (690)
T ss_dssp HHHHHHHHHTTCSEECCBGGGHH-HHHHHHHHHHHTTCC-CCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBT
T ss_pred HHHHHHHHhhCCCEEeccccHHH-HHHHHHHHHHHhCCC-CCceEeecCeeecCCCCCcCCCCCCCCCeeec
Confidence 45666665556899999999765 655444443344333 222446777776 5 78 59999998 66653
No 64
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=94.50 E-value=0.016 Score=57.61 Aligned_cols=55 Identities=15% Similarity=-0.070 Sum_probs=25.5
Q ss_pred eEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHHH
Q 014658 122 DIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 122 Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 179 (421)
++..||.|..+ |.+.-.-...-++.+++ +.+|+.+|. .+| .|||||.+| .|.+.|
T Consensus 222 ~lvp~G~DQ~~-~i~l~Rdla~r~~~~~p--~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 222 CLVPHAIDQDP-YFRMVRDVAPRLGYLKP--SSIHSIFLPSLQGSQTKMSASVQNSSIFVND 280 (393)
T ss_dssp EEEEEEGGGHH-HHHHHHHHTGGGTCCCC--EEEEECCCCC-------------CCCCBTTC
T ss_pred eecccccchHH-HHHHHHHHHHHcCCCCc--eeeccCcccCCCCCCcCCCCCCCCCeEeccC
Confidence 45589999654 66544444444443332 336767776 688 799999998 676543
No 65
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=93.77 E-value=0.042 Score=55.29 Aligned_cols=57 Identities=14% Similarity=-0.066 Sum_probs=35.6
Q ss_pred CceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHHH
Q 014658 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 120 ~~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 179 (421)
..++..+|.|..+ |.+.-.-....++... +.+ +++-+|. .+| .|||||.|| .|.+.|
T Consensus 256 ~~~lVpvG~DQ~~-~i~l~Rdla~r~~~~~-P~~-l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 256 IQCLIPCAIDQDP-YFRMTRDVAPRIGYPK-PAL-LHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHGGGGTCCC-CEE-EEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CceEEEeehhhHH-HHHHHHHHHHHhCCCC-ceE-eecccccCCCCCccccCCCCCCCeeeccC
Confidence 3345557999655 5544444433343222 223 5667776 688 899999999 787654
No 66
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=93.47 E-value=0.022 Score=56.47 Aligned_cols=69 Identities=22% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHhhcCCCceEEeecccCcCcchHHHHHHHHhcc---CCCC--CcEEEee--eeee-e-CC-ccccccc---CCccC
Q 014658 110 SAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QDSN--VSYWMHN--GHVT-N-NN-EKMSKSL---GNFFT 176 (421)
Q Consensus 110 sam~~~~lg~~~Dih~gG~Dli~pH~~~~~a~~~a~~---~~~~--~~~~~h~--g~l~-~-~G-~KMSKSl---GN~i~ 176 (421)
.-|+.+.+=+..|+..+|.|..+ |++.-.=...-++ ++.+ +..+++. ..+. + +| .|||||. ||.|.
T Consensus 161 vLQAADIl~~~ad~vPvG~DQ~~-hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~ 239 (388)
T 3prh_A 161 PLMAADILLYGTDLVPPGEDQKQ-HLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYIT 239 (388)
T ss_dssp HHHHHHHHTTTCCEECCCSSCHH-HHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCB
T ss_pred HHHHHHHHHhCCCEEEechhHHH-HHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeee
Confidence 34677766667899999999775 6655433332222 2222 1111221 1222 3 44 7999999 89997
Q ss_pred HHH
Q 014658 177 IRQ 179 (421)
Q Consensus 177 ~~d 179 (421)
+.|
T Consensus 240 L~D 242 (388)
T 3prh_A 240 LLD 242 (388)
T ss_dssp TTC
T ss_pred cCC
Confidence 643
No 67
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=93.32 E-value=0.054 Score=55.18 Aligned_cols=56 Identities=14% Similarity=-0.050 Sum_probs=35.7
Q ss_pred ceEEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCC--cccccccCC-ccCHHH
Q 014658 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 179 (421)
Q Consensus 121 ~Dih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G--~KMSKSlGN-~i~~~d 179 (421)
.++..+|.|..+ |.+.-.-....++...+ .. +|+-+|+ .+| .|||||.|| .|.+.|
T Consensus 304 ~~~VpvG~DQ~~-~i~l~Rdla~r~~~~~p-~~-l~~pll~gLdG~~~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 304 QCLIPCAIDQDP-YFRMTRDVAPRIGYPKP-AL-LHSTFFPALQGAQTKMSASDPNSSIFLTD 363 (477)
T ss_dssp EEEEEEEGGGHH-HHHHHHHHGGGGTCCCC-EE-EEECCCEETTEEEEECCTTSTTCCCBTTC
T ss_pred ceeEeccccHHH-HHHHHHHHHHHhCCCCc-ee-eecccccCCCCCccccCCCCCCCceeecC
Confidence 344457999765 65544444444443322 24 6667776 688 899999999 787654
No 68
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=92.52 E-value=0.048 Score=54.96 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=33.0
Q ss_pred EEeecccCcCcchHHHHHHHHhccCCCCCcEEEeeeeee-eCCc--ccccccCC-ccCH
Q 014658 123 IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE--KMSKSLGN-FFTI 177 (421)
Q Consensus 123 ih~gG~Dli~pH~~~~~a~~~a~~~~~~~~~~~h~g~l~-~~G~--KMSKSlGN-~i~~ 177 (421)
+-.+|.|..+ |++.-.-...-++.++ +.+ +++.+|. ++|. |||||.+| .|.+
T Consensus 290 ~VPvG~DQ~~-hlel~Rdia~rfn~~~-p~~-~~~~~l~gLdG~~~KMSKS~~ns~I~l 345 (451)
T 3foc_A 290 LIASGIEQDP-YFRLARDLAPRMGHPK-NAY-LLGKFLPGLQGSGTKMSASDPNSAIYL 345 (451)
T ss_dssp EEEECTTTHH-HHHHHHHHTTTTTSCC-CEE-EEECCCCBTTBTTCCCCTTCGGGSCBT
T ss_pred eeeeecchHH-HHHHHHHHHHHhCCCC-Cee-ecCCcccCCCCCCCccCCCCCCCeeee
Confidence 5678999775 6655444433343322 324 5667665 6775 99999998 5654
No 69
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=92.48 E-value=0.057 Score=59.25 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=42.8
Q ss_pred CCCCCCCCC---CccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 1 MADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 1 m~~Lnv~~p---~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
|++|||... .+.+..++|+..++.++.+|.++|++|...+.||||+.+-
T Consensus 112 ~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~ 163 (878)
T 2v0c_A 112 LRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQ 163 (878)
T ss_dssp HHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred HHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCC
Confidence 467899865 4567888899999999999999999999999999998764
No 70
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=92.46 E-value=0.038 Score=53.80 Aligned_cols=68 Identities=26% Similarity=0.145 Sum_probs=40.0
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHH--HHHHHh-ccC---CCC--CcEEEe--eeeee-e-CC-ccccccc---CCc
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENE--IAQSCA-ACQ---DSN--VSYWMH--NGHVT-N-NN-EKMSKSL---GNF 174 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~--~a~~~a-~~~---~~~--~~~~~h--~g~l~-~-~G-~KMSKSl---GN~ 174 (421)
-|+.+.+-+..|+..+|.|..+ |++.- +|...- .++ +.+ +..+++ +..|. + +| .|||||. ||.
T Consensus 134 lQaaDil~~~ad~vpvG~DQ~~-hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~ 212 (341)
T 3sz3_A 134 LMAADILLYGAHQVPVGSDQKQ-HLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNV 212 (341)
T ss_dssp HHHHHHHTTTCSEECCCGGGHH-HHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGC
T ss_pred HHHHHHHHcCCCEEEeccchHH-HHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCe
Confidence 3566666667899999999765 66543 333322 123 221 222233 22333 4 57 6999999 788
Q ss_pred cCHHH
Q 014658 175 FTIRQ 179 (421)
Q Consensus 175 i~~~d 179 (421)
|.+.|
T Consensus 213 I~L~D 217 (341)
T 3sz3_A 213 ITLLE 217 (341)
T ss_dssp CBTTC
T ss_pred eecCC
Confidence 87643
No 71
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=91.84 E-value=0.046 Score=53.34 Aligned_cols=68 Identities=25% Similarity=0.158 Sum_probs=39.3
Q ss_pred HHHHhhcCCCceEEeecccCcCcchHHH--HHHHHhc-cCCCC--CcEEEe--eeeee-e-CC-cccccccC---CccCH
Q 014658 111 AMSAHYLSSKFDIHGGGIDLIFPHHENE--IAQSCAA-CQDSN--VSYWMH--NGHVT-N-NN-EKMSKSLG---NFFTI 177 (421)
Q Consensus 111 am~~~~lg~~~Dih~gG~Dli~pH~~~~--~a~~~a~-~~~~~--~~~~~h--~g~l~-~-~G-~KMSKSlG---N~i~~ 177 (421)
-|+.+.+-+..|+..+|.|..+ |++.- +|...-. +++.+ +..+++ ...+. + +| .|||||.+ |.|.+
T Consensus 143 lQAaDil~~~ad~vpvG~DQ~~-hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L 221 (346)
T 3n9i_A 143 LMAADILLYQTNQVPVGEDQKQ-HLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIEL 221 (346)
T ss_dssp HHHHHHHTTTCSEECCCGGGHH-HHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBT
T ss_pred HHHHHHHHhCceEEEeccchHH-HHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecC
Confidence 3566666667899999999765 66543 3333221 22222 222233 12332 4 67 59999997 67865
Q ss_pred HH
Q 014658 178 RQ 179 (421)
Q Consensus 178 ~d 179 (421)
.|
T Consensus 222 ~D 223 (346)
T 3n9i_A 222 LE 223 (346)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 72
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=88.05 E-value=0.43 Score=46.93 Aligned_cols=59 Identities=12% Similarity=-0.074 Sum_probs=35.5
Q ss_pred CCCceEEeecccCcCcchHHHHHHHHhccC---CCCCcEEEeeeeee-eCCcccccccCC-ccCHH
Q 014658 118 SSKFDIHGGGIDLIFPHHENEIAQSCAACQ---DSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIR 178 (421)
Q Consensus 118 g~~~Dih~gG~Dli~pH~~~~~a~~~a~~~---~~~~~~~~h~g~l~-~~G~KMSKSlGN-~i~~~ 178 (421)
|+...+-..|.|..+ |.+...-...-++. .+.+-. +|+-++. ++|.|||||..| .|.+.
T Consensus 206 gy~a~~VPVG~DQ~~-hleltRdiA~rfn~~~~~~~P~~-~~~~~~pgldG~KmS~S~~ns~I~l~ 269 (372)
T 3a04_A 206 GYRHVVVPVGADQDP-HLRLTRDLADRMAGVVELERPAS-TYHKLQPGLDGRKMSSSRPDSTIFLT 269 (372)
T ss_dssp CCCCEEEEEEGGGHH-HHHHHHHHHHHTTTTSCCCCCEE-EEECCCBCTTSSBCCTTSGGGSCBTT
T ss_pred CccceecccchhhHH-HHHHHHHHHHHhcCcccccChhh-hhhcccCCCCCCccCCCCCCcccccC
Confidence 444556666999765 77765444433432 122223 5556664 699999999854 66543
No 73
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=84.28 E-value=0.32 Score=53.21 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=35.1
Q ss_pred CCCCCCCCC---CccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 1 MADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 1 m~~Lnv~~p---~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
|++||+... ...+...+|...++.++.+|.++|++|...+.||||+.+-
T Consensus 132 l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~ 183 (880)
T 4arc_A 132 LKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQ 183 (880)
T ss_dssp HHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred HHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcC
Confidence 357888753 2455566799999999999999999999999999997654
No 74
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=54.00 E-value=6.7 Score=42.41 Aligned_cols=47 Identities=4% Similarity=-0.132 Sum_probs=37.8
Q ss_pred CCCCCCCCC----ccccc--cccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 2 ADLQCLPPT----YQPRV--SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 2 ~~Lnv~~p~----~~~r~--t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
++|||.- | .++-- ..|...+..++.+|.++|++|...+.|+||+.+-
T Consensus 138 ~~lgi~~-Dw~~~~~T~d~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~ 190 (810)
T 1wkb_A 138 IRAGFSV-DWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVVG 190 (810)
T ss_dssp HHTTCCC-CGGGCCBCSTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred HHhCeEE-ecCCceEecCCchHHHHHHHHHHHHHHHCCCEEECCeeeeccCCcC
Confidence 5678764 4 23444 5799999999999999999999999999997653
No 75
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=40.75 E-value=13 Score=40.30 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 16 SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 16 t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
.+|...+..+..+|.++|++|....-|+||+.+-
T Consensus 152 ~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~ 185 (821)
T 1ile_A 152 PTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCG 185 (821)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHcCCeeecCcceEecCCCC
Confidence 4589999999999999999999999999997754
No 76
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=40.61 E-value=16 Score=39.82 Aligned_cols=48 Identities=8% Similarity=0.001 Sum_probs=37.3
Q ss_pred CCCCCCCC---CccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 2 ADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 2 ~~Lnv~~p---~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
++||+.-- ..++--.+|...+..+..+|.++|++|....-|+||+.+-
T Consensus 130 ~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~ 180 (862)
T 1gax_A 130 KRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCE 180 (862)
T ss_dssp HHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTT
T ss_pred HHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcC
Confidence 45666531 1223345699999999999999999999999999998764
No 77
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=37.14 E-value=25 Score=28.15 Aligned_cols=37 Identities=5% Similarity=0.232 Sum_probs=27.7
Q ss_pred cccccHHHHH-HHHHHHHHcCCeeeeC---CcEEEeccCCC
Q 014658 14 RVSDHMEQIK-DMITQIINNDCAYVVE---GDVFFAVEKSP 50 (421)
Q Consensus 14 r~t~~i~~i~-~~i~~L~~~g~aY~~~---~~vyf~v~~~~ 50 (421)
-.+.-|-.|. +.|+.|.++|+.|.++ ..|||-|...+
T Consensus 71 stSk~i~sifKeAi~~Lqe~G~VfqK~~~~d~lYyVT~qDK 111 (120)
T 1wj5_A 71 GTSGVAQRVFKNALQLLQEKGLVFQRDSGSDKLYYVTTKDK 111 (120)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTSEECSSCSSSCCBEECSSSC
T ss_pred cHHHHHHHHHHHHHHHHHHCCEEEeccCCccceEEeeccch
Confidence 3455666776 9999999999999875 44999665443
No 78
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=37.09 E-value=18 Score=39.59 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=37.3
Q ss_pred CCCCCCC---CCccccccccHHHHHHHHHHHHHcCCeeeeCCcEEEeccCC
Q 014658 2 ADLQCLP---PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 49 (421)
Q Consensus 2 ~~Lnv~~---p~~~~r~t~~i~~i~~~i~~L~~~g~aY~~~~~vyf~v~~~ 49 (421)
++|||.- -...+--.+|...++.+..+|.++|++|....-|+||+.+-
T Consensus 140 ~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~ 190 (917)
T 1ffy_A 140 RRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSE 190 (917)
T ss_dssp HTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred HHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCC
Confidence 5677752 12333344599999999999999999999999999997654
No 79
>1bcp_D Pertussis toxin; ADP-ribosyltransferase, transferase, whooping cough; HET: ATP; 2.70A {Bordetella pertussis} SCOP: b.40.2.1 PDB: 1prt_D 1pto_D*
Probab=21.37 E-value=63 Score=23.96 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=32.3
Q ss_pred EeecccCcCcchHHHHHHHHhccC-CCCCcEEEeeeeeeeCCc
Q 014658 124 HGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNE 165 (421)
Q Consensus 124 h~gG~Dli~pH~~~~~a~~~a~~~-~~~~~~~~h~g~l~~~G~ 165 (421)
.|.|+|+.+|...-.-.++.|.+- ..+-+.++.-..++.+|.
T Consensus 50 fcfgkdlkrpgsspmevmlravfmqqrplrmflgpkqltfegk 92 (110)
T 1bcp_D 50 FCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGK 92 (110)
T ss_dssp EEEEEETTSCSCCHHHHHHHHHHHHTCCEEEEEEEEEEEETTE
T ss_pred ceeccccCCCCCChHHHHHHHHHHhhcchhhhcCcceeeecCc
Confidence 467999999998877788888764 345667777778888874
Done!