RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014658
(421 letters)
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 183 bits (466), Expect = 2e-55
Identities = 115/216 (53%), Positives = 134/216 (62%), Gaps = 1/216 (0%)
Query: 1 MADLQCLPPTYQPRVSDHM-EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQR 59
L L P +PR + H+ E I+ I GDV F V P YG LS Q
Sbjct: 100 FDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQD 159
Query: 60 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSS 119
L+ +AG RV V KRNP DF LWK +K GEPSW SPWG GRPGWHIECSAM+ L +
Sbjct: 160 LDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGN 219
Query: 120 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQ 179
FDIHGGG DL+FPHHENEIAQS A V+YWMH+G V + EKMSKSLGNFFT+R
Sbjct: 220 HFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRD 279
Query: 180 ITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDA 215
+ + Y +R+FL+S HYRS LNYS L A A
Sbjct: 280 VLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAA 315
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 118 bits (296), Expect = 6e-31
Identities = 22/209 (10%), Positives = 49/209 (23%), Gaps = 7/209 (3%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL 60
+ L + + I + + + + K +
Sbjct: 113 VEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQ-PPLPENWWPA 171
Query: 61 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
R + + + +K + E D G + W ++ +
Sbjct: 172 MVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPM---RWSHFG 228
Query: 121 FDIHGGGIDLIFPHHENEIAQSCA-ACQDSNVSYWMHNGHVTNNNE--KMSKSLGNFFTI 177
D G D + + + + V + KMS S GN +
Sbjct: 229 VDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILL 288
Query: 178 RQITERYHPLALRHFLISAHYRSPLNYSV 206
+ E P +R + +
Sbjct: 289 SDLYEVLEPGLVRFIYARHRPNKEIKIDL 317
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 106 bits (265), Expect = 3e-26
Identities = 23/155 (14%), Positives = 44/155 (28%), Gaps = 11/155 (7%)
Query: 62 NNRAGERVAVDSRKRNPADFALWKAAKAG-EPSWDSPWGPGRPGWHIECSAMSAHYLSSK 120
+ V + + L+ +A + R G E +
Sbjct: 195 TRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQT 254
Query: 121 FDIHGGGIDLIFPHHENEIAQSCAACQDSN---------VSYWMHNGHVTNNNEKMSKSL 171
IH G D I H A A + + N ++T +K S S
Sbjct: 255 RVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSR 314
Query: 172 GNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYS 205
+ + + + LR++L + ++S
Sbjct: 315 NWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFS 349
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 87.4 bits (215), Expect = 1e-19
Identities = 21/132 (15%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 92 PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV 151
P PWG P + + L + +
Sbjct: 206 PKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPH 265
Query: 152 S-----------------YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 194
+ + + + KMSK+LGN + E+Y ALR++L+
Sbjct: 266 AVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLL 325
Query: 195 S-AHYRSPLNYS 205
Y S
Sbjct: 326 REIPYGQDTPVS 337
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 85.7 bits (211), Expect = 4e-19
Identities = 28/200 (14%), Positives = 55/200 (27%), Gaps = 31/200 (15%)
Query: 36 YVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWD 95
+VV G + + L A+ + N + + S D
Sbjct: 137 FVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRD 196
Query: 96 SPWGPGRPGWHIECSAMSAHYLSSKF----------------------------DIHGGG 127
+P+ + H G
Sbjct: 197 APYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIG 256
Query: 128 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL 187
D+++ H A + + ++H G+VT N KMSKS G F +
Sbjct: 257 KDIVYFHSLFWPAMLEGSNFRKPSNLFVH-GYVTVNGAKMSKSRGTFIKASTWLNHFDAD 315
Query: 188 ALRHFLIS--AHYRSPLNYS 205
+LR++ + + ++ +
Sbjct: 316 SLRYYYTAKLSSRIDDIDLN 335
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 80.4 bits (197), Expect = 6e-17
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 7/159 (4%)
Query: 63 NRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKF- 121
+ E + +R D G P+ + + L ++
Sbjct: 291 DLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPE 350
Query: 122 -----DIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHV-TNNNEKMSKSLGNFF 175
D++ G D + I S A S + + +G V +KMSKSLGN
Sbjct: 351 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 410
Query: 176 TIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 214
Q+ ++ R ++ S Y + + S L SD
Sbjct: 411 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD 449
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 73.4 bits (179), Expect = 9e-15
Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 26/238 (10%)
Query: 1 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR------ 54
+++ P Q + + + GD+ F E+
Sbjct: 185 DLEVETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENV 244
Query: 55 ----LSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECS 110
+S Q ++ D + N + + SP
Sbjct: 245 KDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWF 304
Query: 111 AMSAHYLSS--------------KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 156
+ + LS+ D+ G D++F + +
Sbjct: 305 SSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLL 364
Query: 157 NGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSA 212
+G V + +KMSKS GN ++ ERY ALR LI A + + L+ A
Sbjct: 365 HGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMA 422
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 61.9 bits (149), Expect = 5e-11
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 2/116 (1%)
Query: 92 PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNV 151
W H S D GID +
Sbjct: 327 DVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAF 386
Query: 152 SYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYS 205
+ +G + + +KMSKS GN I ++ ALR ++ A + +
Sbjct: 387 KNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFG 442
>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 87
Score = 39.5 bits (92), Expect = 5e-05
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 245 AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIES 304
A F M DD NT D + +N + +
Sbjct: 15 VAPAGGEAFEARFIEAMDDDFNTPEAY-SVLFDMAREVNRLKA------------EDMAA 61
Query: 305 LRKIENEVKEVLRILGLLP 323
+ + ++++ +LGLL
Sbjct: 62 ANAMASHLRKLSAVLGLLE 80
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 42.1 bits (98), Expect = 7e-05
Identities = 20/200 (10%), Positives = 46/200 (23%), Gaps = 16/200 (8%)
Query: 9 PTYQPRVSDHMEQIKDMITQIINNDCAYV---VEGDVFFAVEKSPNYGRLSGQRLENNRA 65
P R S+ + + +++ AY ++ ++ Y +
Sbjct: 76 PHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAE 135
Query: 66 GE---------RVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY 116
R+ V L G+ A
Sbjct: 136 ERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDD 195
Query: 117 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFT 176
+ + + + A ++ + K+SK +
Sbjct: 196 HLMGVTDVIRAEEWLVSTPIHVLL--YRAFGWEAPRFYHMPLLRNPDKTKISKRKS-HTS 252
Query: 177 IRQITER-YHPLALRHFLIS 195
+ + P ALR++L
Sbjct: 253 LDWYKAEGFLPEALRNYLCL 272
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 37.2 bits (85), Expect = 0.002
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 81 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 140
F WK + P PG + SA + K + +D+ H + +
Sbjct: 212 FQFWKMGILEGLRFRPYENPYYPG--LRTSAPEGEAYTPKAEETINVVDVRQSHPQALVR 269
Query: 141 QSCAAC---QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 182
+ A + ++ + V +MS G ++ ++ E
Sbjct: 270 AALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLE 314
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 33.8 bits (76), Expect = 0.036
Identities = 11/103 (10%), Positives = 25/103 (24%)
Query: 94 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY 153
+ G G + + + + E+ ++ + +
Sbjct: 373 EEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRP 432
Query: 154 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 196
MSKS GN + + R ++ A
Sbjct: 433 HEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFA 475
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 105
Score = 28.7 bits (64), Expect = 0.52
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 301 LIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLK--DKALKR 341
+IE L + + E+ RIL + G+ +L+ LK K KR
Sbjct: 16 IIELLLEGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKR 58
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 28.1 bits (61), Expect = 2.0
Identities = 7/109 (6%), Positives = 25/109 (22%), Gaps = 6/109 (5%)
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLK------DKALKRAELTEEDVLQLI 353
++ + E + GL+P A + + + + L+
Sbjct: 21 GRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAIPLV 80
Query: 354 EERAAARKNKDFSKSDQIRADLTRKGIALMDMGKETIWRPCVLVEQEQE 402
+ + T + + + ++ +
Sbjct: 81 KALGKVIATGVPEAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGK 129
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 27.4 bits (59), Expect = 3.5
Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 300 SLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLK--------DKALKRAELTEEDVLQ 351
+L+ + + E + + +G++P A + + + K D L +
Sbjct: 20 ALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRAAKTAIDKIDFDALATATGLAGNIAIP 79
Query: 352 LIEERAAARKNKDFSKSDQIRADLTRKGIALMDM 385
+++ A K+ D + + T + I
Sbjct: 80 FVKQLTAIVKDADEDAARYVHWGATSQDILDTAC 113
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 26.1 bits (57), Expect = 4.7
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 298 QLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDK-ALKRAELTEE--------- 347
QLSL +KI+ E+ E + G+ P + VL LK +LK +E+ E
Sbjct: 10 QLSLQALFQKIQPEMLESMEKQGVTPAQLF--VLASLKKHGSLKVSEIAERMEVKPSAVT 67
Query: 348 DVLQLIEERAAARKNKDFSKSDQIRADLTRKGIALMD 384
+ +E++ + + I LT +G +
Sbjct: 68 LMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 104
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella
typhimurium [TaxId: 90371]}
Length = 155
Score = 26.1 bits (57), Expect = 6.0
Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 19/88 (21%)
Query: 100 PGRPGWHI----------------ECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 143
PG G+H+ H K H G + H ++
Sbjct: 42 PGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYND--KGHLGDLPG-L 98
Query: 144 AACQDSNVSYWMHNGHVTNNNEKMSKSL 171
D +Y + + + +E SL
Sbjct: 99 VVNADGTATYPLLAPRLKSLSELKGHSL 126
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 89
Score = 25.0 bits (54), Expect = 6.3
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 250 INKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIE 309
I++++ EF A +S +L T A+ + + L++ K+ + + L +
Sbjct: 16 IDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLL 75
Query: 310 NEVKEVLRI 318
NE+ + R+
Sbjct: 76 NELLDFSRL 84
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 202
Score = 25.9 bits (56), Expect = 7.1
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 290 KKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVLQQLKDKALKRAELTEEDV 349
P + E R I + ++ I+ Y E L+ + K L++ +T E+
Sbjct: 132 VDTSPDLLREIDEEVKRIITEQYEKAKAIVE-----EYKEPLKAVVKKLLEKETITCEEF 186
Query: 350 LQLIEERAAARKNK 363
+++ + K+K
Sbjct: 187 VEVFKLYGIELKDK 200
>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 301
Score = 26.0 bits (56), Expect = 8.3
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 79 ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 130
ADF L + + + W S Y +++ D+ G+ L
Sbjct: 182 ADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRY-TTESDVWAYGVVL 232
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.391
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,558,185
Number of extensions: 72850
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 32
Length of query: 421
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,199,356
Effective search space: 399385548
Effective search space used: 399385548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)