BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014659
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NVL|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
Trypanosoma Brucei
pdb|3NVL|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
Trypanosoma Brucei
Length = 571
Score = 456 bits (1172), Expect = e-128, Method: Compositional matrix adjust.
Identities = 234/416 (56%), Positives = 299/416 (71%), Gaps = 7/416 (1%)
Query: 6 LKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSA 65
L H L R +V +VVLDG G D+Y+ +HVA TP MD+ P +R + AHG+A
Sbjct: 25 LAAHKTLPRRKLV-LVVLDGVGIGPRDEYDAVHVAKTPLMDALFND-PKHFRSICAHGTA 82
Query: 66 VGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--T 123
VGLPT+ DMGNSEVGHNALGAGR+ QGA LVD AL SG+I+ EG+ Y+ +F T
Sbjct: 83 VGLPTDADMGNSEVGHNALGAGRVVLQGASLVDDALESGEIFTSEGYRYLHGAFSQPGRT 142
Query: 124 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKD 183
LHLIGLLSDGGVHSR +Q+ +LK A GAKRIR+H L DGRDV D +S F + +E+
Sbjct: 143 LHLIGLLSDGGVHSRDNQVYQILKHAGANGAKRIRVHALYDGRDVPDKTSFKFTDELEEV 202
Query: 184 LAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKL 243
LA+LR G DA+IASGGGRM+VTMDRYE DW +V+RGW AQVLGE FKSA EA+ K
Sbjct: 203 LAKLREGGCDARIASGGGRMFVTMDRYEADWSIVERGWRAQVLGEG-RAFKSAREALTKF 261
Query: 244 REQ-PNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFD 302
RE+ N +DQY PPFVI ++G+ +G I DGDAV+ FNFR DR++ +++A E E+FDKF+
Sbjct: 262 REEDANISDQYYPPFVIAGDDGRPIGTIEDGDAVLCFNFRGDRVIEMSRAFEEEEFDKFN 321
Query: 303 RVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVT 362
RVR PK+RYAGM++YDG+L +P+++LV PP++ RTS EYL+ +G FA SET KFGHVT
Sbjct: 322 RVRLPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRTSEEYLIGSGCNIFALSETQKFGHVT 381
Query: 363 FFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQV 418
+FWNGNRSG E + EIPSD + FN +P MK+ EI + A AI S ++ +
Sbjct: 382 YFWNGNRSGKLSEERETFCEIPSDR-VQFNQKPLMKSKEITDAAVDAIKSGKYDMI 436
>pdb|3IGY|B Chain B, Crystal Structures Of Leishmania Mexicana Phosphoglycerate
Mutase At High Cobalt Concentrations
pdb|3IGZ|B Chain B, Crystal Structures Of Leishmania Mexicana Phosphoglycerate
Mutase At Low Cobalt Concentration
Length = 561
Score = 451 bits (1160), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/402 (55%), Positives = 292/402 (72%), Gaps = 7/402 (1%)
Query: 1 MDNWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLR 60
M LK H L R ++ +VV+DG G D Y+ +H+A TP MD+ ++ +R +R
Sbjct: 1 MSALLLKPHKDLPRRTVL-IVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNR-HFRCVR 58
Query: 61 AHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF- 119
AHG+AVGLPT+ DMGNSEVGHNALGAGR+ QGA LVD A+ SG+IY EG+ Y+ +F
Sbjct: 59 AHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFS 118
Query: 120 -ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 178
E TLHLIGLLSDGGVHSR +Q+ +++ A + GAKRIR+H L DGRDV DGSS F +
Sbjct: 119 KEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTD 178
Query: 179 TIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVE 238
+E LA++R G DA IASGGGRM+VTMDRY+ DW +V+RGW AQVLG+A H F SA E
Sbjct: 179 ELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARH-FHSAKE 237
Query: 239 AVKKLREQ-PNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED 297
A+ RE+ P DQY PPF++VDE K +G I DGDAV+ NFR DR++ + +A E ED
Sbjct: 238 AITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDED 297
Query: 298 FDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVK 357
F+KFDRVR PK+RYAGM++YDG+L +P+++LV PP++ R S EYL +G+ FACSET K
Sbjct: 298 FNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQK 357
Query: 358 FGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKA 399
FGHVT+FWNGNRSG D E + E+PSD + FN +P+M++
Sbjct: 358 FGHVTYFWNGNRSGKIDEKHETFKEVPSDR-VQFNEKPRMQS 398
>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1O98|A Chain A, 1.4a Crystal Structure Of Phosphoglycerate Mutase From
Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/408 (35%), Positives = 227/408 (55%), Gaps = 23/408 (5%)
Query: 18 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNS 77
VA+++LDG+ N + A+ P D + P L+A G AVGLP E MGNS
Sbjct: 6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYP--HTTLKACGEAVGLP-EGQMGNS 62
Query: 78 EVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSD 132
EVGH +GAGRI Q +++A+ G+ ++E F N++K + GT LHL GLLSD
Sbjct: 63 EVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSD 119
Query: 133 GGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGV 192
GGVHS + L LL+ A++ G KR+ +H DGRDV ++ +++ +++ + E GV
Sbjct: 120 GGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY---GV 176
Query: 193 DAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQ 252
+IA+ GR Y +MDR + WD V++ + A V GE P ++ +E ++ + D+
Sbjct: 177 -GEIATLSGRYY-SMDR-DKRWDRVEKAYRAMVYGEGP-TYRDPLECIEDSYKH-GIYDE 231
Query: 253 YLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPKIRY 311
++ P VIV E+G+ V I D DA++ +NFR DR + ++ EDF +FDR + PK +
Sbjct: 232 FVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLF 291
Query: 312 AGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSG 371
L + E + + P +D T GE L +G+R +ET K+ HVTFF +G R
Sbjct: 292 FVCLTHFSE-TVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREE 350
Query: 372 YFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVI 419
F E+ + I S T++++P+M A E+ + K I + ++ +I
Sbjct: 351 EFPG--EDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAII 396
>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate
Mutase From Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 215 bits (548), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 227/408 (55%), Gaps = 23/408 (5%)
Query: 18 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNS 77
VA+++LDG+ N + A+ P D + P L+A G AVGLP E MGN+
Sbjct: 6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYP--HTTLKACGEAVGLP-EGQMGNA 62
Query: 78 EVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSD 132
EVGH +GAGRI Q +++A+ G+ ++E F N++K + GT LHL GLLSD
Sbjct: 63 EVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSD 119
Query: 133 GGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGV 192
GGVHS + L LL+ A++ G KR+ +H DGRDV ++ +++ +++ + E GV
Sbjct: 120 GGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY---GV 176
Query: 193 DAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQ 252
+IA+ GR Y +MDR + WD V++ + A V GE P ++ +E ++ + D+
Sbjct: 177 -GEIATLSGRYY-SMDR-DKRWDRVEKAYRAMVYGEGP-TYRDPLECIEDSYKH-GIYDE 231
Query: 253 YLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPKIRY 311
++ P VIV E+G+ V I D DA++ +NFR DR + ++ EDF +FDR + PK +
Sbjct: 232 FVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKHLF 291
Query: 312 AGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSG 371
L + E + + P +D T GE L +G+R +ET K+ HVTFF +G R
Sbjct: 292 FVCLTHFSE-TVAGYVAFKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREE 350
Query: 372 YFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVI 419
F E+ + I S T++++P+M A E+ + K I + ++ +I
Sbjct: 351 EFPG--EDRILINSPKVPTYDLKPEMSAYEVTDALLKEIEADKYDAII 396
>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
Phosphoglucerate Mutase
Length = 508
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 148/409 (36%), Positives = 221/409 (54%), Gaps = 26/409 (6%)
Query: 18 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNS 77
A+++LDG+G + N + A P D + P L A G AVGLP E MGNS
Sbjct: 4 TALIILDGFGLREETYGNAVAQAKKPNFDGYWNKFP--HTTLTACGEAVGLP-EGQMGNS 60
Query: 78 EVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF-NYIKPSFETGT-LHLIGLLSDGGV 135
EVGH +GAGRI Q V++A+ G+ ++E F + IK E GT LHL GLLSDGGV
Sbjct: 61 EVGHLNIGAGRIVYQSLTRVNVAIREGEFDKNETFQSAIKSVKEKGTALHLFGLLSDGGV 120
Query: 136 HSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQ 195
HS ++ + LL+ A++ G +++ +H DGRDV ++ +++ + + E GV Q
Sbjct: 121 HSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKE---TGV-GQ 176
Query: 196 IASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQ 252
A+ GR Y +MDR + WD V++ + A V GE P +KSA E V E AN D+
Sbjct: 177 FATISGRYY-SMDR-DKRWDRVEKCYRAMVNGEGP-TYKSAEECV----EDSYANGIYDE 229
Query: 253 YLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDR-VRFPKI-R 310
++ P VIV+E+ V I D DAV+ +NFR DR + +A+ DF +FDR + P I
Sbjct: 230 FVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNGDFREFDRGEKVPHIPE 289
Query: 311 YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRS 370
+ M + + + P +D T GE + G++ +ET K+ HVTFF++G R
Sbjct: 290 FVCMTHFSETVD--GYVAFKPMNLDNTLGEVVAQAGLKQLRIAETEKYPHVTFFFSGGRE 347
Query: 371 GYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVI 419
F EE + I S T++++P+M E+ + I + + H VI
Sbjct: 348 AEFPG--EERILINSPKVATYDLKPEMSIYEVTDALVNEIENDK-HDVI 393
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 231 HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFN 280
H+ S +EA+KK + ++ + +VD+N K VG I DGD + T +
Sbjct: 87 HEDASILEAIKKX-DISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS 135
>pdb|1T2B|A Chain A, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
pdb|1T2B|B Chain B, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
Length = 397
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 72 DDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLS 131
D+ + +G + G G K + + + K + ++G + P +ETG L+
Sbjct: 29 DEAETTPIGWSEAYGGHWVVAGYKEIQAVIQNTKAFSNKGVTF--PRYETGEFELMMAGQ 86
Query: 132 DGGVHSRLDQL 142
D VH + QL
Sbjct: 87 DDPVHKKYRQL 97
>pdb|3BDZ|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BDZ|B Chain B, The Role Of Asn 242 In P450cin
pdb|3BE0|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BE0|B Chain B, The Role Of Asn 242 In P450cin
Length = 397
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 72 DDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLS 131
D+ + +G + G G K + + + K + ++G + P +ETG L+
Sbjct: 29 DEAETTPIGWSEAYGGHWVVAGYKEIQAVIQNTKAFSNKGVTF--PRYETGEFELMMAGQ 86
Query: 132 DGGVHSRLDQL 142
D VH + QL
Sbjct: 87 DDPVHKKYRQL 97
>pdb|4FB2|A Chain A, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|B Chain B, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|C Chain C, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|D Chain D, Crystal Structure Of Substrate-Free P450cin
pdb|4FYZ|A Chain A, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FYZ|B Chain B, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FMX|A Chain A, Crystal Structure Of Substrate-Bound P450cin
pdb|4FMX|B Chain B, Crystal Structure Of Substrate-Bound P450cin
Length = 398
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 72 DDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLS 131
D+ + +G + G G K + + + K + ++G + P +ETG L+
Sbjct: 30 DEAETTPIGWSEAYGGHWVVAGYKEIQAVIQNTKAFSNKGVTF--PRYETGEFELMMAGQ 87
Query: 132 DGGVHSRLDQL 142
D VH + QL
Sbjct: 88 DDPVHKKYRQL 98
>pdb|3AKC|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cdp And
Adp From Thermus Thermophilus Hb8
pdb|3AKD|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cdp From
Thermus Thermophilus Hb8
pdb|3AKE|A Chain A, Crystal Structure Of Cmp Kinase In Complex With Cmp From
Thermus Thermophilus Hb8
Length = 208
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 160 HILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKR 219
+L DG D+ F+ T E D + V A G R +V E V
Sbjct: 76 RVLADGEDL-----TSFLHTPEVD------RVVSAVARLPGVRAWVNRRLKEVPPPFVAE 124
Query: 220 GWD--AQVLGEAPHKF----KSAVEAVKKLREQPNANDQYLPPFVIVDENGKA 266
G D V EA HKF V A ++ RE+P A ++ L + DE KA
Sbjct: 125 GRDMGTAVFPEAAHKFYLTASPEVRAWRRARERPQAYEEVLRDLLRRDERDKA 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,610,740
Number of Sequences: 62578
Number of extensions: 623106
Number of successful extensions: 1539
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1512
Number of HSP's gapped (non-prelim): 15
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)