Query 014659
Match_columns 421
No_of_seqs 148 out of 783
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:17:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02538 2,3-bisphosphoglycera 100.0 1E-164 2E-169 1285.9 45.4 416 4-420 9-426 (558)
2 TIGR01307 pgm_bpd_ind 2,3-bisp 100.0 2E-161 3E-166 1255.6 42.6 385 16-420 1-387 (501)
3 COG0696 GpmI Phosphoglyceromut 100.0 9E-156 2E-160 1191.4 36.1 390 14-420 2-394 (509)
4 PRK05434 phosphoglyceromutase; 100.0 6E-149 1E-153 1165.2 39.7 389 14-420 3-393 (507)
5 KOG4513 Phosphoglycerate mutas 100.0 1E-128 3E-133 964.7 33.8 404 3-421 6-411 (531)
6 PF06415 iPGM_N: BPG-independe 100.0 4.9E-89 1.1E-93 649.4 22.8 221 97-327 1-223 (223)
7 PF01676 Metalloenzyme: Metall 99.9 2.2E-23 4.8E-28 201.1 4.2 78 330-420 69-146 (252)
8 PRK04135 cofactor-independent 97.6 6.1E-05 1.3E-09 78.5 5.1 64 12-84 4-69 (395)
9 COG3635 Predicted phosphoglyce 97.3 0.00036 7.7E-09 72.2 5.6 69 15-92 3-76 (408)
10 PRK04024 cofactor-independent 97.1 0.00043 9.4E-09 72.5 4.6 59 17-84 4-65 (412)
11 TIGR02535 hyp_Hser_kinase prop 97.1 0.00045 9.8E-09 72.0 4.3 59 17-84 2-63 (396)
12 PRK04200 cofactor-independent 97.0 0.00067 1.5E-08 70.7 4.1 59 17-84 2-63 (395)
13 TIGR00306 apgM 2,3-bisphosphog 96.9 0.0008 1.7E-08 70.2 4.3 59 19-86 1-63 (396)
14 COG2861 Uncharacterized protei 84.8 2.3 5E-05 42.3 6.2 156 14-186 26-205 (250)
15 cd01455 vWA_F11C1-5a_type Von 84.6 3.4 7.3E-05 39.6 7.1 75 123-225 111-186 (191)
16 PF01261 AP_endonuc_2: Xylose 84.1 5.6 0.00012 35.6 8.1 81 140-225 27-118 (213)
17 cd01453 vWA_transcription_fact 78.9 8.7 0.00019 35.6 7.6 72 124-225 108-179 (183)
18 PRK09453 phosphodiesterase; Pr 76.3 8.6 0.00019 35.1 6.7 68 127-202 3-72 (182)
19 PF01261 AP_endonuc_2: Xylose 75.8 8 0.00017 34.6 6.2 24 139-162 70-93 (213)
20 smart00518 AP2Ec AP endonuclea 68.4 20 0.00042 34.6 7.4 82 137-225 42-128 (273)
21 cd01467 vWA_BatA_type VWA BatA 66.3 16 0.00035 32.5 6.0 56 111-169 88-145 (180)
22 TIGR02335 hydr_PhnA phosphonoa 64.9 5.1 0.00011 42.2 2.8 35 15-51 12-46 (408)
23 PRK09856 fructoselysine 3-epim 64.7 13 0.00028 35.8 5.4 55 138-197 88-146 (275)
24 TIGR03417 chol_sulfatase choli 58.8 11 0.00023 40.4 4.0 32 18-51 5-38 (500)
25 PRK06552 keto-hydroxyglutarate 56.6 34 0.00075 33.0 6.7 121 81-225 67-206 (213)
26 COG3731 SrlB Phosphotransferas 56.2 11 0.00023 34.0 2.8 29 357-387 80-108 (123)
27 PRK13685 hypothetical protein; 56.1 38 0.00083 34.2 7.2 79 125-227 196-289 (326)
28 TIGR03436 acidobact_VWFA VWFA- 52.6 57 0.0012 32.0 7.6 38 125-165 166-203 (296)
29 PF13768 VWA_3: von Willebrand 51.1 37 0.00081 29.6 5.5 62 111-180 83-145 (155)
30 TIGR00849 gutA PTS system, glu 50.4 14 0.0003 33.1 2.6 23 358-382 81-103 (121)
31 PRK01060 endonuclease IV; Prov 50.3 77 0.0017 30.6 8.1 82 138-224 45-133 (281)
32 cd01465 vWA_subgroup VWA subgr 50.0 59 0.0013 28.4 6.6 38 124-165 98-138 (170)
33 COG2515 Acd 1-aminocyclopropan 49.7 19 0.0004 37.2 3.8 34 129-167 67-100 (323)
34 PRK13125 trpA tryptophan synth 49.6 88 0.0019 30.4 8.3 98 61-187 31-128 (244)
35 cd07937 DRE_TIM_PC_TC_5S Pyruv 49.3 1E+02 0.0023 30.5 8.9 54 123-187 107-161 (275)
36 PRK10377 PTS system glucitol/s 47.2 16 0.00035 32.5 2.6 23 358-382 81-103 (120)
37 PF13519 VWA_2: von Willebrand 47.2 1.3E+02 0.0027 25.8 8.2 74 123-224 99-172 (172)
38 PRK07114 keto-hydroxyglutarate 45.9 50 0.0011 32.3 5.9 120 80-224 69-212 (222)
39 COG1082 IolE Sugar phosphate i 45.7 1.1E+02 0.0024 29.0 8.2 65 123-187 60-138 (274)
40 cd00198 vWFA Von Willebrand fa 45.1 52 0.0011 27.3 5.3 42 122-166 100-141 (161)
41 cd00019 AP2Ec AP endonuclease 43.9 38 0.00083 32.8 4.9 58 138-197 83-140 (279)
42 PF03279 Lip_A_acyltrans: Bact 43.7 76 0.0016 31.1 6.9 104 61-167 118-245 (295)
43 KOG1434 Meiotic recombination 42.3 4 8.7E-05 41.4 -2.2 26 273-298 149-179 (335)
44 PRK13759 arylsulfatase; Provis 42.3 17 0.00036 38.8 2.3 32 18-51 9-41 (485)
45 PRK13209 L-xylulose 5-phosphat 40.4 65 0.0014 31.1 5.9 26 138-163 97-122 (283)
46 cd02685 MIT_C MIT_C; domain fo 40.0 66 0.0014 29.9 5.4 51 137-187 33-83 (148)
47 PRK13753 dihydropteroate synth 39.1 1.7E+02 0.0036 29.8 8.6 65 124-188 2-73 (279)
48 cd01477 vWA_F09G8-8_type VWA F 37.3 93 0.002 29.3 6.2 76 91-169 84-174 (193)
49 cd03770 SR_TndX_transposase Se 36.7 1.6E+02 0.0035 25.9 7.3 27 140-169 85-112 (140)
50 cd07388 MPP_Tt1561 Thermus the 36.6 2.1E+02 0.0046 27.8 8.6 68 123-202 3-71 (224)
51 cd01465 vWA_subgroup VWA subgr 36.2 1.4E+02 0.0031 25.9 6.9 14 157-170 98-111 (170)
52 PF07555 NAGidase: beta-N-acet 35.8 1.4E+02 0.0031 30.6 7.6 52 138-192 54-105 (306)
53 COG1015 DeoB Phosphopentomutas 35.8 35 0.00077 36.1 3.3 38 16-53 2-39 (397)
54 TIGR01182 eda Entner-Doudoroff 35.4 1.1E+02 0.0023 29.6 6.4 120 81-223 59-199 (204)
55 cd00019 AP2Ec AP endonuclease 35.0 1.6E+02 0.0034 28.6 7.5 84 139-225 44-129 (279)
56 PRK12383 putative mutase; Prov 35.0 35 0.00075 36.4 3.2 38 16-53 2-41 (406)
57 PF03829 PTSIIA_gutA: PTS syst 34.4 31 0.00067 30.6 2.3 22 358-381 81-102 (117)
58 cd01454 vWA_norD_type norD typ 33.7 1.2E+02 0.0027 27.1 6.2 67 110-180 88-165 (174)
59 PRK11613 folP dihydropteroate 33.4 1.9E+02 0.004 29.4 8.0 89 123-223 14-109 (282)
60 cd01454 vWA_norD_type norD typ 31.9 2.4E+02 0.0051 25.2 7.7 40 158-199 106-148 (174)
61 TIGR01496 DHPS dihydropteroate 31.7 2.6E+02 0.0057 27.6 8.6 81 131-223 14-94 (257)
62 PRK09140 2-dehydro-3-deoxy-6-p 31.5 2.5E+02 0.0053 26.9 8.1 83 82-184 63-148 (206)
63 COG1954 GlpP Glycerol-3-phosph 30.8 54 0.0012 31.4 3.4 86 123-226 23-119 (181)
64 PRK01060 endonuclease IV; Prov 30.6 2.1E+02 0.0045 27.6 7.6 24 138-161 87-110 (281)
65 COG1944 Uncharacterized conser 30.5 45 0.00097 35.5 3.1 58 159-230 5-67 (398)
66 cd01460 vWA_midasin VWA_Midasi 30.4 67 0.0014 32.3 4.2 40 124-165 165-204 (266)
67 TIGR00542 hxl6Piso_put hexulos 30.2 1.7E+02 0.0036 28.4 6.9 23 138-160 92-114 (279)
68 KOG3698 Hyaluronoglucosaminida 29.6 1.1E+02 0.0024 34.5 5.8 51 138-191 72-122 (891)
69 cd01025 TOPRIM_recR TOPRIM_rec 29.2 90 0.002 27.6 4.3 66 114-182 13-82 (112)
70 PRK13210 putative L-xylulose 5 29.2 1.2E+02 0.0027 29.0 5.7 25 138-162 92-116 (284)
71 PF00884 Sulfatase: Sulfatase; 29.0 46 0.001 31.4 2.7 32 18-51 3-35 (308)
72 smart00518 AP2Ec AP endonuclea 28.7 1.1E+02 0.0023 29.5 5.2 25 137-161 81-105 (273)
73 COG1574 Predicted metal-depend 28.3 59 0.0013 35.9 3.7 42 123-165 281-345 (535)
74 TIGR03822 AblA_like_2 lysine-2 28.0 1.8E+02 0.0038 29.6 6.8 68 114-182 218-292 (321)
75 PRK12383 putative mutase; Prov 27.3 1.5E+02 0.0033 31.7 6.4 59 336-420 234-292 (406)
76 TIGR01696 deoB phosphopentomut 26.9 60 0.0013 34.4 3.3 35 17-51 1-35 (381)
77 PF05368 NmrA: NmrA-like famil 26.9 4.2E+02 0.009 24.6 8.7 79 104-187 50-133 (233)
78 TIGR00853 pts-lac PTS system, 26.8 1.7E+02 0.0036 24.7 5.4 77 124-209 4-91 (95)
79 cd03174 DRE_TIM_metallolyase D 26.6 4.2E+02 0.0091 25.1 8.9 59 123-187 90-158 (265)
80 PF03460 NIR_SIR_ferr: Nitrite 26.6 1.5E+02 0.0033 22.6 4.8 34 123-157 8-41 (69)
81 PTZ00441 sporozoite surface pr 26.5 4.5E+02 0.0097 29.6 9.9 98 104-225 125-227 (576)
82 PRK05362 phosphopentomutase; P 26.5 63 0.0014 34.3 3.4 22 16-37 2-23 (394)
83 TIGR02635 RhaI_grampos L-rhamn 25.9 2E+02 0.0044 30.4 7.0 74 138-218 114-196 (378)
84 TIGR00542 hxl6Piso_put hexulos 25.7 3.7E+02 0.0081 26.0 8.4 113 103-225 9-139 (279)
85 PRK12677 xylose isomerase; Pro 25.3 1.7E+02 0.0037 30.8 6.3 108 138-246 112-235 (384)
86 PF13844 Glyco_transf_41: Glyc 25.2 4.6E+02 0.0099 28.7 9.6 145 51-245 266-426 (468)
87 PRK09989 hypothetical protein; 25.1 4E+02 0.0086 25.5 8.4 86 106-203 11-109 (258)
88 cd01461 vWA_interalpha_trypsin 24.5 3.2E+02 0.007 23.6 7.1 62 111-180 85-148 (171)
89 PRK12677 xylose isomerase; Pro 23.8 3.5E+02 0.0075 28.4 8.2 80 141-225 68-163 (384)
90 TIGR03234 OH-pyruv-isom hydrox 23.5 1.7E+02 0.0037 27.8 5.5 57 139-197 83-140 (254)
91 PF00782 DSPc: Dual specificit 23.3 69 0.0015 27.2 2.5 48 130-179 47-97 (133)
92 COG2028 Uncharacterized conser 23.0 1E+02 0.0022 28.1 3.5 43 232-285 8-50 (145)
93 PRK09997 hydroxypyruvate isome 22.8 1.9E+02 0.0042 27.7 5.8 24 138-161 83-106 (258)
94 cd01480 vWA_collagen_alpha_1-V 22.8 2E+02 0.0044 26.2 5.6 11 19-29 5-15 (186)
95 TIGR00433 bioB biotin syntheta 22.8 3.9E+02 0.0084 26.0 8.0 69 139-223 64-132 (296)
96 cd01451 vWA_Magnesium_chelatas 22.4 2.3E+02 0.0049 25.6 5.9 33 123-155 98-134 (178)
97 cd01473 vWA_CTRP CTRP for CS 22.3 1.8E+02 0.004 27.0 5.4 54 109-165 88-148 (192)
98 PRK14829 undecaprenyl pyrophos 22.3 3.1E+02 0.0068 27.2 7.1 59 139-203 44-110 (243)
99 PF01081 Aldolase: KDPG and KH 22.3 65 0.0014 30.9 2.3 89 78-185 56-147 (196)
100 PRK14085 imidazolonepropionase 22.1 5.6E+02 0.012 26.1 9.3 35 128-164 196-230 (382)
101 PRK06886 hypothetical protein; 22.0 8.8E+02 0.019 24.9 12.2 76 138-227 160-235 (329)
102 TIGR02631 xylA_Arthro xylose i 21.9 2.4E+02 0.0052 29.6 6.6 56 139-197 114-177 (382)
103 PLN02962 hydroxyacylglutathion 21.9 77 0.0017 31.2 2.9 26 135-161 68-94 (251)
104 TIGR00040 yfcE phosphoesterase 21.7 1E+02 0.0022 27.3 3.4 32 127-161 3-35 (158)
105 cd01450 vWFA_subfamily_ECM Von 21.6 2.7E+02 0.0059 23.5 5.9 31 123-154 103-133 (161)
106 PF00753 Lactamase_B: Metallo- 21.3 58 0.0013 27.8 1.7 20 135-154 50-69 (194)
107 TIGR02108 PQQ_syn_pqqB coenzym 21.1 40 0.00086 34.1 0.7 18 135-152 86-103 (302)
108 TIGR03581 EF_0839 conserved hy 20.8 95 0.0021 30.8 3.1 98 79-184 116-231 (236)
109 TIGR02442 Cob-chelat-sub cobal 20.8 2.7E+02 0.0058 31.1 7.1 15 156-170 565-579 (633)
110 PRK06846 putative deaminase; V 20.6 7E+02 0.015 25.8 9.7 92 120-226 186-278 (410)
111 cd00003 PNPsynthase Pyridoxine 20.0 2.9E+02 0.0062 27.6 6.3 103 89-209 49-161 (234)
No 1
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=100.00 E-value=9.9e-165 Score=1285.86 Aligned_cols=416 Identities=83% Similarity=1.331 Sum_probs=392.6
Q ss_pred CccccCCCCCCCCcEEEEEEcccCCCCCCCCCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCC-CCCCcccccc
Q 014659 4 WKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTED-DMGNSEVGHN 82 (421)
Q Consensus 4 ~~~~~~~~~~~~~pvvLiIlDGwG~~~~~~gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~G-qMGNSEVGHl 82 (421)
|.++.++.+++++|||||||||||++++.++|||++|+||+||+|+++||+.+++|+|||++|||| +| ||||||||||
T Consensus 9 ~~~~~~~~~~~~~pv~LiILDGwG~~~~~~~NAi~~A~tP~~D~l~~~~p~~~~~l~AsG~~VGLP-~~~qmGNSEVGHl 87 (558)
T PLN02538 9 WKLAPHPKIPKGKPLLLIVLDGWGENAPDEFNAIHVAPTPTMDSLKAGAPERWRLVKAHGTAVGLP-SDDDMGNSEVGHN 87 (558)
T ss_pred ccccCCCCCCCCCCEEEEEecCCCCCCCCCCCHhhhcCCCCHHHHHHhCCCCCceEEECCCcCCCC-CCCCCcchHHhhh
Confidence 788999988888899999999999999999999999999999999999994227999999999999 65 5999999999
Q ss_pred cCCccceeccchHHHHHHHhcCCCccchhHhhhhhhcCCCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEE
Q 014659 83 ALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHIL 162 (421)
Q Consensus 83 niGAGRvv~Q~l~rI~~aI~~g~~~~n~~l~~~~~~~~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f 162 (421)
||||||||+|+++|||+||++|+|++||+|+++++.+++++|||||||||||||||++||++|+++|+++|+++||||+|
T Consensus 88 niGaGRiv~Q~l~rI~~ai~~g~~~~n~~l~~~~~~~~~~~lHl~GL~SdGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f 167 (558)
T PLN02538 88 ALGAGRIFAQGAKLVDLALASGKIFEGEGFKYIKEAFATGTLHLIGLLSDGGVHSRLDQLQLLLKGAAERGAKRIRVHVL 167 (558)
T ss_pred hhccceeecchhHHHHHHHhcCCcccCHHHHHHHHHhcCCeeEEEEeccCCCcccHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 99999999999999999999999999999999999886679999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCcccCHHHHHHH
Q 014659 163 TDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKK 242 (421)
Q Consensus 163 ~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g~g~~~~~~~~~ai~~ 242 (421)
+|||||+|+||++||++|++.|++++++|+.|+||||+||||.||||||+|||||++||++||.|+|+..++|+.+||++
T Consensus 168 ~DGRDt~p~S~~~yl~~l~~~l~~~~~~g~~g~iAsv~GR~yyaMDR~d~rW~rv~~ay~alv~g~~~~~~~~~~~ai~~ 247 (558)
T PLN02538 168 TDGRDVPDGSSVGFVETLEKDLAELREKGCDARIASGGGRMYVTMDRYENDWNVVKRGWDAHVLGEAPHKFKSALEAVKK 247 (558)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHhhcCCCcEEEEEEeCCceeecccccccHHHHHHHHHHHhcCCCccccCCHHHHHHH
Confidence 99999999999999999999999875556524999999994339999999999999999999999995478999999999
Q ss_pred HHhCCC-CCCCCCCCEEEecCCCCccccccCCCEEEEeecCcchHHHHHHHhccCCCCCCccCCCCceeEEEeeeecCCC
Q 014659 243 LREQPN-ANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGEL 321 (421)
Q Consensus 243 ~Y~~~~-~tDEFi~P~vi~~~~~~~~~~I~dgD~Vif~NFR~DRarqlt~al~~~~f~~f~r~~~~~l~~~~mt~Yd~~~ 321 (421)
+|++|. +|||||+|++|.+.+|+|.++|+|||+|||||||+|||||||+||++++|++|+|...|++.|+|||+|++++
T Consensus 248 ~y~~g~~~tDEfi~P~vi~~~~g~~~~~i~dgD~ViffNFR~DRarqit~a~~~~~f~~f~r~~~p~~~~~~mt~Yd~~~ 327 (558)
T PLN02538 248 LREEPPPANDQYLPPFVIVDEDGKPVGPIEDGDAVVTFNFRADRMVMIAKALEYEDFDKFDRVRVPKIRYAGMLQYDGEL 327 (558)
T ss_pred HHhCCCCCCCCcCCCeEEecCCCCCcccccCCCEEEEecCCChHHHHHHHHhcccCCcccCcCCCCCcEEEeCeEecccC
Confidence 999963 5999999999987567888899999999999999999999999999999999999888888999999999999
Q ss_pred CCccccccCCCCCCcCHHHHHHhCCCcEEEEecccccceEEEeecCCccccCCCCCceEEEccCCCccCccCCCCCcHHH
Q 014659 322 KLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALE 401 (421)
Q Consensus 322 ~~~v~fl~~p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~~gE~R~lvpSpkVaTYDl~PeMsA~e 401 (421)
++|++|||||+.++||||||||++||+||||||||||||||||||||+|+||.+++|+|++||||+|+|||+||||||+|
T Consensus 328 ~~p~~~~f~p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~e~e~~i~ipsp~v~tyd~~PeMSA~e 407 (558)
T PLN02538 328 KLPSHYLVSPPLIERTSGEYLVANGVRTFACSETVKFGHVTFFWNGNRSGYFNEKLEEYVEIPSDNGIPFNVQPKMKALE 407 (558)
T ss_pred CCcceEeeCCCcCCCCHHHHHHhCCCceEEeecccccceeEEeecCCccccCCCCCceEEECCCCCCCCcccCCCCCHHH
Confidence 99977777999999999999999999999999999999999999999999994448999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEe
Q 014659 402 IAERAKKAILSRRFHQVID 420 (421)
Q Consensus 402 vtd~~i~ai~~~~ydfIi~ 420 (421)
|||+++++|++++||||++
T Consensus 408 Vtd~~i~~i~~~~ydfi~v 426 (558)
T PLN02538 408 IAEKARDALLSGKFDQVRV 426 (558)
T ss_pred HHHHHHHHHhcCCCCEEEE
Confidence 9999999999999999987
No 2
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=100.00 E-value=1.5e-161 Score=1255.63 Aligned_cols=385 Identities=38% Similarity=0.644 Sum_probs=374.3
Q ss_pred CcEEEEEEcccCCCCCCCCCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCcccccccCCccceeccchH
Q 014659 16 NIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAK 95 (421)
Q Consensus 16 ~pvvLiIlDGwG~~~~~~gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGHlniGAGRvv~Q~l~ 95 (421)
+|||||||||||+++++++|||++|+||+||+|+++||+ ++|+|||++|||| +|||||||||||||||||||||+++
T Consensus 1 ~p~~L~IlDG~G~~~~~~~nai~~A~tP~~d~l~~~~p~--~~l~asG~~VGLP-~gqmGNSEVGH~~iGaGRiv~q~~~ 77 (501)
T TIGR01307 1 KKVVLVILDGWGYRNDDDGNAIFAAKTPTMDELIAAYPY--SLLDASGLDVGLP-DGQMGNSEVGHLNIGAGRVVYQDLV 77 (501)
T ss_pred CCEEEEEecCCCCCCCCCCCHHHhcCCCcHHHHHHhCCC--eEeeeCCcccCCC-CCCCCchHHHHhhcCCCceeccchH
Confidence 589999999999999999999999999999999999999 9999999999999 9999999999999999999999999
Q ss_pred HHHHHHhcCCCccchhHhhhhhhc-C-CCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCch
Q 014659 96 LVDLALASGKIYQDEGFNYIKPSF-E-TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSS 173 (421)
Q Consensus 96 rI~~aI~~g~~~~n~~l~~~~~~~-~-~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~ 173 (421)
|||+||++|+|++||+|+++++.+ + +++|||||||||||||||+|||++|+++|+++|+++||||+|+|||||+|+||
T Consensus 78 ri~~ai~~g~~~~n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~ 157 (501)
T TIGR01307 78 RISQAIKDGEFFANPALLGAIDRAKDNNGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTDGRDTAPKSA 157 (501)
T ss_pred HHHHHHhcCCcccCHHHHHHHHHHHhcCCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCchhH
Confidence 999999999999999999999999 4 46999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCCCCC
Q 014659 174 VGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQY 253 (421)
Q Consensus 174 ~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g~g~~~~~~~~~ai~~~Y~~~~~tDEF 253 (421)
++||++|++.|+++ |+| +||||+|||| |||| |+|||||++||++||.|+|+ .++||.+||+++|++ ++||||
T Consensus 158 ~~~~~~l~~~~~~~---~~~-~iasv~GRyy-aMDR-d~rw~rv~~ay~~~~~g~~~-~~~~~~~ai~~~y~~-~~~Def 229 (501)
T TIGR01307 158 ESYLEQLQAFLKEI---GNG-RIATISGRYY-AMDR-DQRWDRVEIAYKAITGGDGF-EFSDPVAYIQDAYAR-DITDEF 229 (501)
T ss_pred HHHHHHHHHHHHHh---CCE-EEEEEeCcce-eecC-ccchHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhC-CCCCCC
Confidence 99999999999987 775 9999999999 9999 99999999999999999995 789999999999999 579999
Q ss_pred CCCEEEecCCCCccccccCCCEEEEeecCcchHHHHHHHhccCCCCCCccCCCCceeEEEeeeecCCCCCccccccCCCC
Q 014659 254 LPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE 333 (421)
Q Consensus 254 i~P~vi~~~~~~~~~~I~dgD~Vif~NFR~DRarqlt~al~~~~f~~f~r~~~~~l~~~~mt~Yd~~~~~~v~fl~~p~~ 333 (421)
|+|++|.+ + ++|+|||+|||||||+|||||||+||.+++|++|+|...|++.|+|||+|++++++|++| ||++
T Consensus 230 i~p~vi~~--~---~~i~dgD~vif~NfR~DRarqi~~a~~~~~f~~f~r~~~~~~~~~~mt~Y~~~~~~~v~f--~~~~ 302 (501)
T TIGR01307 230 IKPTIIGN--G---GALKDGDAVIFFNFRADRAREITRALVNSDFDGFPREKNPKLDFVTMTQYDGTFPSPVAF--PPQS 302 (501)
T ss_pred CCCeEecC--C---CcccCCCEEEEecCCChHHHHHHHHhcCCCCCcCCcCCCCCceEEEeEEecCCCCCceec--CCCC
Confidence 99999963 2 479999999999999999999999999999999999888889999999999999999999 9999
Q ss_pred CCcCHHHHHHhCCCcEEEEecccccceEEEeecCCccccCCCCCceEEEccCCCccCccCCCCCcHHHHHHHHHHHHHcC
Q 014659 334 IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSR 413 (421)
Q Consensus 334 ~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~~gE~R~lvpSpkVaTYDl~PeMsA~evtd~~i~ai~~~ 413 (421)
++||||||||++|++||||||||||||||||||||+|+|| +||+|+|||||||+|||++|||||+||||+++++|+++
T Consensus 303 ~~n~lge~ls~~g~~qlriaETeKyaHVTfFfnGg~e~~f--~ge~r~lv~sp~v~tyd~~PeMsa~evtd~~i~~I~~~ 380 (501)
T TIGR01307 303 LTNTLGEVLAKHDLTQLRIAETEKYAHVTFFFNGGVEVPF--AGETRTLIPSPKVATYDLQPEMSAKAVTDAVLEAIAQG 380 (501)
T ss_pred CCCCHHHHHHHCCCcEEEEeeccccceeeeeecCCccccC--CCceeEEeCCCCCCccccCCccCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCcEEEe
Q 014659 414 RFHQVID 420 (421)
Q Consensus 414 ~ydfIi~ 420 (421)
+||||++
T Consensus 381 k~dfi~v 387 (501)
T TIGR01307 381 KFDLIVV 387 (501)
T ss_pred CCCEEEE
Confidence 9999987
No 3
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.3e-156 Score=1191.43 Aligned_cols=390 Identities=39% Similarity=0.662 Sum_probs=376.1
Q ss_pred CCCcEEEEEEcccCCCCCCCCCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCcccccccCCccceeccc
Q 014659 14 RNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQG 93 (421)
Q Consensus 14 ~~~pvvLiIlDGwG~~~~~~gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGHlniGAGRvv~Q~ 93 (421)
.++||+|+||||||++++.++|||++|+||+||+||++||| ++|.|||++|||| +|||||||||||||||||||||+
T Consensus 2 ~~k~~~LiIlDG~G~~~~~~~NAv~~A~tP~~d~l~~~~P~--~~l~aSG~~VGLP-~GQmGNSEVGHlnIGAGRivyq~ 78 (509)
T COG0696 2 MKKPVVLIILDGWGYREETEGNAVALAKTPTMDALLNNYPH--TLLKASGLAVGLP-EGQMGNSEVGHLNIGAGRIVYQD 78 (509)
T ss_pred CCCcEEEEEecCCCCCcccccCHHHhcCCchHHHHHHhCCc--hhhhccccccCCC-CCcccCccccceeeecceEeecc
Confidence 46899999999999999999999999999999999999999 9999999999999 99999999999999999999999
Q ss_pred hHHHHHHHhcCCCccchhHhhhhhhc-CC-CceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCC
Q 014659 94 AKLVDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDG 171 (421)
Q Consensus 94 l~rI~~aI~~g~~~~n~~l~~~~~~~-~~-~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~ 171 (421)
|+|||++|++|+|++|++|..+++.+ ++ ++||||||+||||||||+|||+||+++|+++|+++||+|+|+|||||+|+
T Consensus 79 l~rI~~aie~g~f~~n~~l~~~~~~v~~~~~~lHlmGl~S~GGVHSh~~Hl~ali~~a~k~g~~kV~~H~f~DGRD~~P~ 158 (509)
T COG0696 79 LTRIDKAIEDGSFFENPALLNAIDEVKANGSALHLMGLVSDGGVHSHIDHLLALIELAAKNGMKKVYLHAFLDGRDTAPR 158 (509)
T ss_pred cchhhhhhhcCcccccHHHHHHHHHhhhcCceEEEEecccCCcccchHHHHHHHHHHHHhcCCcEEEEEEecCCCCCCch
Confidence 99999999999999999999999999 55 59999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCCC
Q 014659 172 SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAND 251 (421)
Q Consensus 172 S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g~g~~~~~~~~~ai~~~Y~~~~~tD 251 (421)
|++.||++|+++++++ |.| +|||++|||| |||| ||||||||+||++|+.++++..+.+|.++++++|++ ++||
T Consensus 159 s~~~~le~l~~~~~~~---g~~-~iasi~GRYY-aMDR-D~rWdRve~Ay~a~~~~~~~~~~~~~~~~~~~~Y~~-~~tD 231 (509)
T COG0696 159 SALQYLEELEAKAKEY---GNG-RIASISGRYY-AMDR-DNRWDRVEKAYDALTYGEGEFTANSAVEAVQASYAR-GITD 231 (509)
T ss_pred hHHHHHHHHHHHhhcc---Cce-EEEEEeeeee-cccc-ccchHHHHHHHHHHHccccccccCCHHHHHHHHHhc-CCCc
Confidence 9999999999999998 875 9999999999 9999 999999999999999999866899999999999999 5799
Q ss_pred CCCCCEEEecCCCCccccccCCCEEEEeecCcchHHHHHHHhccCCCCCCccC-CCCceeEEEeeeecCCCCCccccccC
Q 014659 252 QYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRV-RFPKIRYAGMLQYDGELKLPSHYLVS 330 (421)
Q Consensus 252 EFi~P~vi~~~~~~~~~~I~dgD~Vif~NFR~DRarqlt~al~~~~f~~f~r~-~~~~l~~~~mt~Yd~~~~~~v~fl~~ 330 (421)
|||.|++|.+ .|.+.|+|||+||||||||||||||+++|+.++|.+|.|. +.|+..|+|||+|+.+++.|++| |
T Consensus 232 EFv~p~~i~~---~~~~~i~d~DsvIf~NFR~DRarQl~~~l~~~~f~gF~r~~~~~~~~~vtmt~Y~~~~~~~vaF--~ 306 (509)
T COG0696 232 EFVKPTVIYG---EPVAAIEDGDSVIFFNFRPDRARQLTRALTNDDFDGFSRDKKVPKNDFVTMTEYDGSDPLPVAF--P 306 (509)
T ss_pred ccccceeecC---cccccccCCCeEEEeccChhHHHHHHHHhccccccccCcccccccCceEEEEecCCCCCcceec--c
Confidence 9999999964 3667899999999999999999999999999999999984 34545799999999999999999 9
Q ss_pred CCCCCcCHHHHHHhCCCcEEEEecccccceEEEeecCCccccCCCCCceEEEccCCCccCccCCCCCcHHHHHHHHHHHH
Q 014659 331 PPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAI 410 (421)
Q Consensus 331 p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~~gE~R~lvpSpkVaTYDl~PeMsA~evtd~~i~ai 410 (421)
|++++||||||+|++|++||||||||||||||||||||+|+|| +||+|+|||||||+|||++|||||+||||+++++|
T Consensus 307 p~~i~NtlgEv~~~~gl~QlRiAETEKYAHVTfFfnGG~E~~~--~~e~r~li~SpkVaTYDl~PEMSa~evtd~~~~~i 384 (509)
T COG0696 307 PENLKNTLGEVLSKHGLTQLRIAETEKYAHVTFFFNGGVEEPF--KGEDRILIPSPKVATYDLKPEMSAKEVTDALVEAI 384 (509)
T ss_pred cccccccHHHHHHhcCchhhhhhhhccccceEEEecCcccccc--CCCccEeccCCCccccccCcccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HcCCCcEEEe
Q 014659 411 LSRRFHQVID 420 (421)
Q Consensus 411 ~~~~ydfIi~ 420 (421)
++|+||+||+
T Consensus 385 ~~g~~D~iV~ 394 (509)
T COG0696 385 EKGKYDLIVL 394 (509)
T ss_pred hCCCCCEEEE
Confidence 9999999997
No 4
>PRK05434 phosphoglyceromutase; Provisional
Probab=100.00 E-value=5.9e-149 Score=1165.19 Aligned_cols=389 Identities=42% Similarity=0.695 Sum_probs=375.4
Q ss_pred CCCcEEEEEEcccCCCCCCCCCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCcccccccCCccceeccc
Q 014659 14 RNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQG 93 (421)
Q Consensus 14 ~~~pvvLiIlDGwG~~~~~~gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGHlniGAGRvv~Q~ 93 (421)
+++|||||||||||+++++++|||++|+||+||+|+++||+ ++|+|||++|||| +|||||||||||||||||||+|+
T Consensus 3 ~~~~~~L~IlDG~G~~~~~~~nai~~A~tp~~d~l~~~~p~--~~l~a~g~~VGLP-~gqmGNSEVGH~~iGaGriv~q~ 79 (507)
T PRK05434 3 MKKPVVLIILDGWGYREETEGNAIALAKTPNLDRLWANYPH--TLLSASGLAVGLP-DGQMGNSEVGHLNIGAGRIVYQD 79 (507)
T ss_pred CCCcEEEEEecCCCCCCCCCCCHHHhcCCCcHHHHHHhCCC--eEeecCCcccCCC-CCCccchHHhHhhcCCCceeccc
Confidence 46799999999999999999999999999999999999999 9999999999999 99999999999999999999999
Q ss_pred hHHHHHHHhcCCCccchhHhhhhhhc-CC-CceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCC
Q 014659 94 AKLVDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDG 171 (421)
Q Consensus 94 l~rI~~aI~~g~~~~n~~l~~~~~~~-~~-~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~ 171 (421)
|+|||+||++|+|++||+|+++++.+ ++ ++|||||||||||||||++||++|+++|+++|+++|+||+|+|||||+|+
T Consensus 80 ~~~i~~ai~~g~~~~n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~ 159 (507)
T PRK05434 80 LTRINKAIEDGSFFENPALLDAIDKAKKNGGALHLMGLLSDGGVHSHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPPK 159 (507)
T ss_pred hHHHHHHHhcCCcccCHHHHHHHHHHHhcCCeEEEEEeccCCCcccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCch
Confidence 99999999999999999999999999 54 69999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCCC
Q 014659 172 SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAND 251 (421)
Q Consensus 172 S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g~g~~~~~~~~~ai~~~Y~~~~~tD 251 (421)
||++||++|++.|+++ |+| +||||+|||| |||| |+|||||++||++||.|+|+..++||.+||+++|++ ++||
T Consensus 160 s~~~~i~~l~~~~~~~---~~~-~iasv~GRyy-amDR-d~rw~rv~~a~~~~~~g~~~~~~~~~~~~i~~~y~~-~~~D 232 (507)
T PRK05434 160 SALGYLEELEAKLAEL---GVG-RIASVSGRYY-AMDR-DKRWDRVEKAYDALVLGEGPFTAESAVEALEASYAR-GETD 232 (507)
T ss_pred hHHHHHHHHHHHHHHh---CCe-eEEEEecccc-cccc-ccchHHHHHHHHHHhcCCCCcCCCCHHHHHHHHHhC-CCCC
Confidence 9999999999999998 875 9999999999 9999 999999999999999999964579999999999998 5799
Q ss_pred CCCCCEEEecCCCCccccccCCCEEEEeecCcchHHHHHHHhccCCCCCCccCCCCceeEEEeeeecCCCCCccccccCC
Q 014659 252 QYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSP 331 (421)
Q Consensus 252 EFi~P~vi~~~~~~~~~~I~dgD~Vif~NFR~DRarqlt~al~~~~f~~f~r~~~~~l~~~~mt~Yd~~~~~~v~fl~~p 331 (421)
|||+|++|. ++|.++|+|||+|||||||+|||||||+||.+++|++|+| ..|++.|+|||+|++++++|++| ||
T Consensus 233 efi~p~vi~---~~~~~~i~d~D~vif~NfR~DRa~qi~~a~~~~~f~~f~~-~~~~~~~~~m~~Y~~~~~~~~~f--~~ 306 (507)
T PRK05434 233 EFVKPTVIG---GEPVAGIEDGDAVIFFNFRADRARQITRAFTDPDFDGFDR-VPKLLNFVTMTQYDADLKVPVAF--PP 306 (507)
T ss_pred CCCCCEEec---CCCcCcccCCCEEEEeccCChHHHHHHHHhcCcCcccCCC-CCCCceEEEceEccCCCCCceec--CC
Confidence 999999995 4466889999999999999999999999999999999999 45677899999999999999988 99
Q ss_pred CCCCcCHHHHHHhCCCcEEEEecccccceEEEeecCCccccCCCCCceEEEccCCCccCccCCCCCcHHHHHHHHHHHHH
Q 014659 332 PEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAIL 411 (421)
Q Consensus 332 ~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~~gE~R~lvpSpkVaTYDl~PeMsA~evtd~~i~ai~ 411 (421)
++++|+|+|+|+++|++|+|+||||||+|||||||||++.+| ++|+|+++|||+|+|||++||||+.+++|+++++|+
T Consensus 307 ~~~~~~l~e~L~~~gl~q~R~aEtek~ahvt~f~~GG~~~~~--~~e~r~~~~s~~va~yd~~p~Ms~~e~~d~~i~~l~ 384 (507)
T PRK05434 307 ESLKNTLGEVLAKAGLTQLRIAETEKYAHVTFFFNGGREEPF--PGEDRILIPSPKVATYDLKPEMSAYEVTDKLVEAIE 384 (507)
T ss_pred cccccHHHHHHhhCCCchhhhhcCCCCCeEEEecCCCcCCCC--CCceeeecCCceeecccCCCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999 889999999999999999999999999999999999
Q ss_pred cCCCcEEEe
Q 014659 412 SRRFHQVID 420 (421)
Q Consensus 412 ~~~ydfIi~ 420 (421)
+++||||++
T Consensus 385 ~~~~Dfv~v 393 (507)
T PRK05434 385 SGKYDFIIL 393 (507)
T ss_pred ccCCCEEEE
Confidence 999999987
No 5
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-128 Score=964.72 Aligned_cols=404 Identities=66% Similarity=1.027 Sum_probs=380.6
Q ss_pred CCccccCCCCCCCCcEEEEEEcccCCCC-CCCCCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCccccc
Q 014659 3 NWKLKEHPQLSRNNIVAVVVLDGWGEFK-PDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGH 81 (421)
Q Consensus 3 ~~~~~~~~~~~~~~pvvLiIlDGwG~~~-~~~gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGH 81 (421)
+|+|.-||.....+.|+||++||||.++ +..||||..|.||.||.|...--| ++|.|||.+|||| +|.||||||||
T Consensus 6 ~~~l~~~~~~~~~~sv~liViDGWG~se~d~ygNai~~a~tp~Md~L~~g~~w--~li~AHG~hVGLP-eglMGNSEVGH 82 (531)
T KOG4513|consen 6 MWKLFDHPKLPKGKSVALIVIDGWGESEPDQYGNAIHNAPTPAMDSLKRGRTW--FLIKAHGTHVGLP-EGLMGNSEVGH 82 (531)
T ss_pred hhhhhcccccCCCCeEEEEEEcccCCCCCccccchhhcCCChHHHHhhcCcch--hhhhhcCccccCC-ccccccccccc
Confidence 5899999999999999999999999997 456799999999999999888645 9999999999999 99999999999
Q ss_pred ccCCccceeccchHHHHHHHhcCCCccchhHhhhhhhcCCCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEE
Q 014659 82 NALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI 161 (421)
Q Consensus 82 lniGAGRvv~Q~l~rI~~aI~~g~~~~n~~l~~~~~~~~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~ 161 (421)
++||||||++||++|||.|+++|.|++|+.|+...+..++|+|||+|||||||||||+|||++|++..+++|.++++||+
T Consensus 83 l~iGaGRii~Qdivrid~Av~~gk~~~~e~~~d~~~~~~~g~lHlvGlvSDGGVHShidhl~allka~~erg~~ei~vH~ 162 (531)
T KOG4513|consen 83 LAIGAGRIIAQDIVRIDLAVASGKIKENEGFKDKSLSFEDGTLHLVGLVSDGGVHSHIDHLQALLKALAERGAKEIRVHI 162 (531)
T ss_pred cccccceeeecchhHHHHHHhcCceecccchhhHHhhccCCeEEEEEEecCCchhhhHHHHHHHHHHHHhcCCceEEEEE
Confidence 99999999999999999999999999999999988877778999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCcccCHHHHHH
Q 014659 162 LTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVK 241 (421)
Q Consensus 162 f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g~g~~~~~~~~~ai~ 241 (421)
++|||||.|.|+.+||++-.++|.+. ++.++|||+.|||| +||| +|+||||+++|+||+.|+.++.+.++++++.
T Consensus 163 ~tDGRDt~p~s~vgfLe~~l~fLr~~---t~~gkvAs~~GR~Y-~mDR-~N~werv~~~~~amv~ge~~~e~g~~ve~v~ 237 (531)
T KOG4513|consen 163 LTDGRDTLPGSSVGFLEADLDFLRKV---TVDGKVASGGGRMY-VMDR-ENDWERVKRGWDAMVLGEAPHEFGGAVEAVK 237 (531)
T ss_pred ecCCccCCCCcchhhHHHHHHHHHHc---cccceEeeccceEE-Eeec-cccHHHhhhhhhhhhhccCchhhcchHHHHh
Confidence 99999999999999999998888876 55569999999999 8999 9999999999999999998788999999998
Q ss_pred -HHHhCCCCCCCCCCCEEEecCCCCccccccCCCEEEEeecCcchHHHHHHHhccCCCCCCccCCCCceeEEEeeeecCC
Q 014659 242 -KLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGE 320 (421)
Q Consensus 242 -~~Y~~~~~tDEFi~P~vi~~~~~~~~~~I~dgD~Vif~NFR~DRarqlt~al~~~~f~~f~r~~~~~l~~~~mt~Yd~~ 320 (421)
..|+. +.+|||++|++|.++.|+.. .+.|+|||||||+||||||+.||...+|+.|+|-+.|+++|++||||+.+
T Consensus 238 ~~rye~-g~~De~L~p~vi~ge~Gr~~---~~DdtiifFnfRADRMr~ia~a~~~~~~d~~~r~~~p~i~~~gMtqYk~e 313 (531)
T KOG4513|consen 238 TLRYEP-GANDEYLPPFVIVGERGRAV---GPDDTIIFFNFRADRMRMIAKALEYNDFDKFDRVRHPNIRYAGMTQYKGE 313 (531)
T ss_pred hhhhCC-CCCccccCCeEEECCCCccc---CCCCeEEEEecchHHHHHHHHHhccccccccccccCCcceEeehhhhccc
Confidence 77777 56999999999998876533 23689999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCcCHHHHHHhCCCcEEEEecccccceEEEeecCCccccCCCCCceEEEccCCCccCccCCCCCcHH
Q 014659 321 LKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKAL 400 (421)
Q Consensus 321 ~~~~v~fl~~p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~~gE~R~lvpSpkVaTYDl~PeMsA~ 400 (421)
|. |.-+||.|+.+++||||||+.+|++|++|||||||+|||||||||+|..| .+|++++||||+|.+||+||+|+|.
T Consensus 314 l~-psk~Lf~pp~i~~tlaE~La~~gv~~fhcaEteK~aHVTfFfNGgre~~F--~~ee~v~iPSp~v~sfd~qP~M~a~ 390 (531)
T KOG4513|consen 314 LK-PSKYLFSPPCIDRTLAEYLAHNGVRTFHCAETEKFAHVTFFFNGGREGYF--NEEEYVEIPSPSVISFDVQPKMKAL 390 (531)
T ss_pred cC-cceeeeccccccchHHHHHHhcCcceeeecccceeeeEEEEEcCCccccc--CcceEEEecCCCceeeecChhhhHH
Confidence 96 44445599999999999999999999999999999999999999999999 7799999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEeC
Q 014659 401 EIAERAKKAILSRRFHQVIDI 421 (421)
Q Consensus 401 evtd~~i~ai~~~~ydfIi~~ 421 (421)
||+++.+++|++|++|+|+|.
T Consensus 391 eva~ka~~~ie~G~~p~v~vN 411 (531)
T KOG4513|consen 391 EVAEKARDAIESGKFPQVRVN 411 (531)
T ss_pred HHHHHHHHHHHcCCCCeEEEc
Confidence 999999999999999999983
No 6
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=100.00 E-value=4.9e-89 Score=649.41 Aligned_cols=221 Identities=42% Similarity=0.742 Sum_probs=179.5
Q ss_pred HHHHHhcCCCccchhHhhhhhhc-CC-CceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchH
Q 014659 97 VDLALASGKIYQDEGFNYIKPSF-ET-GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSV 174 (421)
Q Consensus 97 I~~aI~~g~~~~n~~l~~~~~~~-~~-~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~ 174 (421)
||+||++|+|++||+|+++++++ ++ ++|||||||||||||||++||++|+++|+++|+++||||+|+|||||+|+||+
T Consensus 1 I~~aI~~g~~~~n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~ 80 (223)
T PF06415_consen 1 INKAIEDGSFFKNPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSAL 80 (223)
T ss_dssp HHHHHHTTGGGTSHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHH
T ss_pred CchHHhCCCcccCHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHH
Confidence 89999999999999999999999 54 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCcccCHHHHHHHHHhCCCCCCCCC
Q 014659 175 GFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYL 254 (421)
Q Consensus 175 ~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g~g~~~~~~~~~ai~~~Y~~~~~tDEFi 254 (421)
+||++|++.|+++ |.| +||||+|||| |||| |||||||++||++||.|+|+..+.||.+||+++|++ ++|||||
T Consensus 81 ~yl~~l~~~l~~~---~~g-~IAsv~GRyy-aMDR-D~rWeRv~~Ay~alv~g~g~~~~~~~~~ai~~~Y~~-g~tDEFi 153 (223)
T PF06415_consen 81 KYLEELEEKLAEI---GIG-RIASVSGRYY-AMDR-DKRWERVEKAYDALVNGEGPNKFDDALEAIEASYAR-GITDEFI 153 (223)
T ss_dssp HHHHHHHHHHHHH---TCT-EEEEEEECCC-CT---TS-HHHHHHHHHHHCT--SE-EESSHHHHHHHHHHT-T--GGG-
T ss_pred HHHHHHHHHHHhh---CCc-eEEEEeceee-eecc-ccCHHHHHHHHHHHhcCccccccCCHHHHHHHHHcC-CCCCcCC
Confidence 9999999999998 886 9999999999 9999 999999999999999999966899999999999999 5799999
Q ss_pred CCEEEecCCCCccccccCCCEEEEeecCcchHHHHHHHhccCCCCCCccCCCCceeEEEeeeecCCCCCcccc
Q 014659 255 PPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHY 327 (421)
Q Consensus 255 ~P~vi~~~~~~~~~~I~dgD~Vif~NFR~DRarqlt~al~~~~f~~f~r~~~~~l~~~~mt~Yd~~~~~~v~f 327 (421)
+|++|.+ .|.++|+|||+||||||||||||||++||++|+|++|+|...|++.|+|||+|+++++.||+|
T Consensus 154 ~P~vi~~---~~~~~i~dgD~vif~NFR~DRarql~~al~~~~f~~f~r~~~~~l~~~~mt~Yd~~~~~pv~F 223 (223)
T PF06415_consen 154 PPTVISD---KPYGGIKDGDAVIFFNFRPDRARQLTRALTDPDFDGFDRGPKPNLNFVTMTEYDEDFPFPVAF 223 (223)
T ss_dssp --EEEB----SBS----TT-EEEE--S-STTTHHHHHHHH-SS--SS--STT-SSEEEECC-SBTTTTCCCSE
T ss_pred CCEEecC---CCCCCccCCCEEEEEecChhHHHHHHHHHcCCCCccCCcCCCCCcEEEECccccCCCCCcccC
Confidence 9999975 455789999999999999999999999999999999999998999999999999999999987
No 7
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=99.87 E-value=2.2e-23 Score=201.10 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=68.6
Q ss_pred CCCCCCcCHHHHHHhCCCcEEEEecccccceEEEeecCCccccCCCCCceEEEccCCCccCccCCCCCcHHHHHHHHHHH
Q 014659 330 SPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKA 409 (421)
Q Consensus 330 ~p~~~~ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~~gE~R~lvpSpkVaTYDl~PeMsA~evtd~~i~a 409 (421)
.+.+..+.++.+..+.|++++.+|||.|++||++||+| ..|++++.+|++.+|+|++.+++++++++
T Consensus 69 ~~~~~~~~~~~~~~~~~l~~~~ia~~~~~~~i~~~~~g-------------~~v~~~~g~t~~~~~~~~~~~~~~~~~~~ 135 (252)
T PF01676_consen 69 GAGDYPNLPPSFTEKYGLKGAGIAETPKIGGIADFFGG-------------MDVISVEGATGDVDPDMSAKEIAEAAIEA 135 (252)
T ss_dssp CEEEEES-HHHHHHHCTHHEEEEEECHHHHHHHHHTTT-------------EEEE--STSSCCGSTTTTHHHHHHHHHHH
T ss_pred ccccccccccceeeccCceecceecccccceeHHHhCC-------------cccccccccccccccchhhHHHHHHHHHh
Confidence 34455566788999999999999999999999999999 56788999999999999999999999999
Q ss_pred HHcCCCcEEEe
Q 014659 410 ILSRRFHQVID 420 (421)
Q Consensus 410 i~~~~ydfIi~ 420 (421)
|++++||||++
T Consensus 136 l~~~~~~~v~~ 146 (252)
T PF01676_consen 136 LKKDKYDFVFV 146 (252)
T ss_dssp HHHTTSSEEEE
T ss_pred hhcccCCeEEE
Confidence 99999999986
No 8
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=97.62 E-value=6.1e-05 Score=78.45 Aligned_cols=64 Identities=25% Similarity=0.339 Sum_probs=50.9
Q ss_pred CCCCCcEEEEEEcccCCCCCCCC--CccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCcccccccC
Q 014659 12 LSRNNIVAVVVLDGWGEFKPDKY--NCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (421)
Q Consensus 12 ~~~~~pvvLiIlDGwG~~~~~~g--NAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGHlni 84 (421)
..+.+++|++|+||.|-.+-.++ -.++.|+|||||+|.++--. -++++-..++-.. ||++||+|
T Consensus 4 ~~~~~K~v~ii~DGmgD~p~~e~gkTPLe~A~tPnlD~lA~~G~~--Gl~~~v~~G~~pG-------SD~a~lsl 69 (395)
T PRK04135 4 QKNDSKIVLLVLDGLGGLPHPENGKTELEAAKTPNLDALAKESDL--GLLIPVLPGITPG-------SGPGHLGL 69 (395)
T ss_pred ccCCCcEEEEEecCCCCCCCCCCCCChhhccCCCChHHHHHcCCc--ccceeeCCCCCCC-------cHHHhhhh
Confidence 34567899999999999976443 48999999999999988645 6666666655555 99999986
No 9
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.00036 Score=72.23 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=52.3
Q ss_pred CCcEEEEEEcccCCCCCCCC---CccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCcccccccC-Ccc-ce
Q 014659 15 NNIVAVVVLDGWGEFKPDKY---NCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL-GAG-RI 89 (421)
Q Consensus 15 ~~pvvLiIlDGwG~~~~~~g---NAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGHlni-GAG-Rv 89 (421)
+.+++|||+||.|-++-.+. --++.|+|||||+|.+.--. |..--.| +|.-=-|+++||+| |-- +.
T Consensus 3 ~~killiv~DGlgDrP~~~l~gkTpLq~A~tPNmD~LA~~g~~--------Gl~~~i~-pGi~pGSd~ahLsl~GYDP~~ 73 (408)
T COG3635 3 KMKILLIVLDGLGDRPVEELDGKTPLQAAKTPNMDRLAKEGIC--------GLMDPIK-PGIRPGSDTAHLSLFGYDPYK 73 (408)
T ss_pred cceEEEEEecCCCCCcccccCCCCchhhcCCCCHHHHHhcCCc--------ccccccC-CCCCCCCCcceeeeeccCcce
Confidence 45799999999999988774 58999999999999887544 4333345 67766799999985 554 44
Q ss_pred ecc
Q 014659 90 FAQ 92 (421)
Q Consensus 90 v~Q 92 (421)
.|+
T Consensus 74 yy~ 76 (408)
T COG3635 74 YYT 76 (408)
T ss_pred eec
Confidence 443
No 10
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=97.14 E-value=0.00043 Score=72.49 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=46.9
Q ss_pred cEEEEEEcccCCCCCCC---CCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCcccccccC
Q 014659 17 IVAVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (421)
Q Consensus 17 pvvLiIlDGwG~~~~~~---gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGHlni 84 (421)
++||||+||.|-.+-.+ .-.++.|+|||||+|.++--. -++++-..++-.. ||++||+|
T Consensus 4 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~--Gl~~~v~~G~~pg-------Sd~a~lsl 65 (412)
T PRK04024 4 KILLIILDGLGDRPVKELGGKTPLEAANTPNMDKLAKEGIC--GLMDPISPGVRPG-------SDTAHLAI 65 (412)
T ss_pred cEEEEEecCCCCCcccccCCCChhhccCCCChHHHHHcCCc--ccceeeCCCCCCC-------cHHHHhhh
Confidence 69999999999987543 359999999999999988644 5666555555444 99999986
No 11
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=97.10 E-value=0.00045 Score=71.97 Aligned_cols=59 Identities=29% Similarity=0.417 Sum_probs=45.3
Q ss_pred cEEEEEEcccCCCCCCC---CCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCcccccccC
Q 014659 17 IVAVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (421)
Q Consensus 17 pvvLiIlDGwG~~~~~~---gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGHlni 84 (421)
++||||+||.|-.+-.+ .-.++.|+|||||+|.++--. -++++= | +|.-=-||++||.|
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~--Gl~~~v------~-~g~~pgSd~a~lsl 63 (396)
T TIGR02535 2 KYIILIGDGMADWPLEELGGRTPLQVANTPNMDKLAKRGRC--GLLRTV------P-EGFPPGSDVANMSL 63 (396)
T ss_pred CEEEEEecCCCCCcccccCCCChhhccCCCcHHHHHhcCCC--cceeec------C-CCCCCCcHHHHHHh
Confidence 58999999999987543 258999999999999988644 555553 3 44444499999976
No 12
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=96.97 E-value=0.00067 Score=70.67 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=45.5
Q ss_pred cEEEEEEcccCCCCCCC---CCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCcccccccC
Q 014659 17 IVAVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL 84 (421)
Q Consensus 17 pvvLiIlDGwG~~~~~~---gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGHlni 84 (421)
+.||+|+||.|-.+-.+ .-.++.|+|||||+|.++-=. -++++ .| +|..=-|||+||+|
T Consensus 2 k~v~~i~DG~~D~p~~~l~gkTpLe~A~tP~lD~lA~~g~~--Gl~~~------v~-~g~~pgSd~a~lsl 63 (395)
T PRK04200 2 KYIILIGDGMADEPIEELGGKTPLQAAKTPNMDKMAREGRV--GLAKT------VP-EGFPPGSDVANMSI 63 (395)
T ss_pred CEEEEEecCCCCCcccccCCCCccceeCCCchHHHHhcCCc--cccee------cC-CCCCCCcHHHHHHh
Confidence 58999999999987543 258999999999999988544 45554 34 45545599999986
No 13
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=96.93 E-value=0.0008 Score=70.17 Aligned_cols=59 Identities=22% Similarity=0.396 Sum_probs=46.0
Q ss_pred EEEEEcccCCCCCCC---CCccccCCCCcHHHHHhhCCCCceEEeeccCccCCCCCCCCCCcccccccC-Cc
Q 014659 19 AVVVLDGWGEFKPDK---YNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNAL-GA 86 (421)
Q Consensus 19 vLiIlDGwG~~~~~~---gNAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGHlni-GA 86 (421)
|+||+||.|-.+-.+ .-.++.|+|||||+|.++--. -++++=..++-.. ||++||+| |.
T Consensus 1 v~~i~DG~~D~p~~~l~gkTpLe~A~tPnlD~lA~~g~~--Gl~~~v~~G~~pg-------Sd~a~l~llGY 63 (396)
T TIGR00306 1 VLIIIDGLADRPLEELDGKTPLQVAKTPNMDRLAEEGIC--GLMRTIKEGIRPG-------SDTAHLSILGY 63 (396)
T ss_pred CEEEecCCCCCcccccCCCCchhccCCCChHHHHhcCCe--eeeeeeCCCCCCC-------chhhhhhhccC
Confidence 589999999987543 359999999999999988655 6666655555555 99999986 44
No 14
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.80 E-value=2.3 Score=42.29 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=92.5
Q ss_pred CCCcEEEEEEcccCCCCCCCC------CccccCCCCcHHHHHhhCCCCceEEeeccCcc--CCCC---CCCCCCcccccc
Q 014659 14 RNNIVAVVVLDGWGEFKPDKY------NCIHVADTPTMDSFKKSAPGRWRLLRAHGSAV--GLPT---EDDMGNSEVGHN 82 (421)
Q Consensus 14 ~~~pvvLiIlDGwG~~~~~~g------NAi~~A~tP~~D~L~~~yP~~~t~L~AsG~~V--GLP~---~GqMGNSEVGHl 82 (421)
.++|-+-||+||+|++..... =.|..|=-|...++.+.+ ..++++|..| =+|= .+ =++|-|||
T Consensus 26 ~~~~klaIVIddlG~~~~~~~~i~~Lp~eVTlA~~P~~~~~~~~~----~~A~~~G~evlih~PmeP~~~--~~~e~gtL 99 (250)
T COG2861 26 ARGPKLAIVIDDLGLSQTGTQAILALPPEVTLAFAPFAPHAREWA----QKARNAGHEVLIHMPMEPFSY--PKIEPGTL 99 (250)
T ss_pred CCCceEEEEECCccccHHHHHHHHhCCccceEEecCCCchhHHHH----HHHHhcCCEEEEeccCCcccC--CCCCCCCc
Confidence 556788899999999977655 134455566666665544 4466777766 2230 11 24778876
Q ss_pred cCCccceeccchHHHHHHHhc-----------CC-Cccchh-HhhhhhhcCCCceEEEEeecCCCccccHHHHHHHHHHH
Q 014659 83 ALGAGRIFAQGAKLVDLALAS-----------GK-IYQDEG-FNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGA 149 (421)
Q Consensus 83 niGAGRvv~Q~l~rI~~aI~~-----------g~-~~~n~~-l~~~~~~~~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a 149 (421)
+.+-= ...-..||.+|.++ |+ |-+|+. +..+++.++. -+|+-| |-|--. +-.+ -++|
T Consensus 100 ~~~~s--~~e~~~rl~~a~~~v~~~~GlnNhmGs~~tsn~~aM~~~m~~Lk~--r~l~fl--Ds~T~a---~S~a-~~iA 169 (250)
T COG2861 100 RPGMS--AEEILRRLRKAMNKVPDAVGLNNHMGSRFTSNEDAMEKLMEALKE--RGLYFL--DSGTIA---NSLA-GKIA 169 (250)
T ss_pred ccCCC--HHHHHHHHHHHHhhCccceeehhhhhhhhcCcHHHHHHHHHHHHH--CCeEEE--cccccc---cchh-hhhH
Confidence 65531 12235567666654 33 334544 3446666622 123322 322211 2222 4688
Q ss_pred HHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHH
Q 014659 150 SERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAE 186 (421)
Q Consensus 150 ~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~ 186 (421)
++.||+.+.=|.|+|+-|+ +.+-.+=++.++...++
T Consensus 170 k~~gVp~~~rdvfLD~e~~-~~~V~kql~~~~~~Ark 205 (250)
T COG2861 170 KEIGVPVIKRDVFLDDEDT-EAAVLKQLDAAEKLARK 205 (250)
T ss_pred hhcCCceeeeeeeecCcCC-HHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 66656666666554443
No 15
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=84.60 E-value=3.4 Score=39.58 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=50.4
Q ss_pred ceEEEEeecCCCc-cccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEee
Q 014659 123 TLHLIGLLSDGGV-HSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGG 201 (421)
Q Consensus 123 ~lHl~GLlSDGGV-HSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~G 201 (421)
.-.++=|||||.- -+-++.+.+-.++|++.|| + ||.|.=|-. . ++....++++ -.|
T Consensus 111 ~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV-~--iytIgiG~~---d------~~~l~~iA~~-----------tgG 167 (191)
T cd01455 111 DEAIVIVLSDANLERYGIQPKKLADALAREPNV-N--AFVIFIGSL---S------DEADQLQREL-----------PAG 167 (191)
T ss_pred CCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCC-E--EEEEEecCC---C------HHHHHHHHhC-----------CCC
Confidence 3468999999996 4556888876889999998 3 555543431 0 2222222322 159
Q ss_pred cccccccCCCCChHHHHHHHHHHH
Q 014659 202 RMYVTMDRYENDWDVVKRGWDAQV 225 (421)
Q Consensus 202 RyyvaMDR~D~rW~Rv~~ay~a~v 225 (421)
|||+|.|. +-.++.|+.|.
T Consensus 168 ~~F~A~d~-----~~L~~iy~~I~ 186 (191)
T cd01455 168 KAFVCMDT-----SELPHIMQQIF 186 (191)
T ss_pred cEEEeCCH-----HHHHHHHHHHH
Confidence 99988776 78888888776
No 16
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=84.11 E-value=5.6 Score=35.61 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEEecCCCCCCC---------chHHHHHHHHHHHHHHhcCCCCceEEEEeecc--ccccc
Q 014659 140 DQLQLLLKGASERGAKRIRLHILTDGRDVLDG---------SSVGFVETIEKDLAELRGKGVDAQIASGGGRM--YVTMD 208 (421)
Q Consensus 140 ~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~---------S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRy--yvaMD 208 (421)
+.+..+.+++++.|++-+.+|+.+........ .+..++++..+.++.+ |+. .|.+.+|++ .-.-+
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~l---g~~-~i~~~~g~~~~~~~~~ 102 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRL---GAK-YIVVHSGRYPSGPEDD 102 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHH---TBS-EEEEECTTESSSTTSS
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHh---CCC-ceeecCcccccccCCC
Confidence 46889999999999987889999988886431 2256666666666666 775 778888843 20222
Q ss_pred CCCCChHHHHHHHHHHH
Q 014659 209 RYENDWDVVKRGWDAQV 225 (421)
Q Consensus 209 R~D~rW~Rv~~ay~a~v 225 (421)
. +.+|+++.+.++.++
T Consensus 103 ~-~~~~~~~~~~l~~l~ 118 (213)
T PF01261_consen 103 T-EENWERLAENLRELA 118 (213)
T ss_dssp H-HHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 2 456666666655554
No 17
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=78.92 E-value=8.7 Score=35.63 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=43.8
Q ss_pred eEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecc
Q 014659 124 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRM 203 (421)
Q Consensus 124 lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRy 203 (421)
-+++=|+|||.-+--. -+.++++.++++|+ +|++=.| |-+ ++.|++ +++. -.|||
T Consensus 108 ~~iiil~sd~~~~~~~-~~~~~~~~l~~~~I-~v~~Igi--G~~---------~~~L~~-ia~~-----------tgG~~ 162 (183)
T cd01453 108 REVLIIFSSLSTCDPG-NIYETIDKLKKENI-RVSVIGL--SAE---------MHICKE-ICKA-----------TNGTY 162 (183)
T ss_pred eEEEEEEcCCCcCChh-hHHHHHHHHHHcCc-EEEEEEe--chH---------HHHHHH-HHHH-----------hCCee
Confidence 4467778887654221 24567889999998 4666555 411 122222 2332 26899
Q ss_pred cccccCCCCChHHHHHHHHHHH
Q 014659 204 YVTMDRYENDWDVVKRGWDAQV 225 (421)
Q Consensus 204 yvaMDR~D~rW~Rv~~ay~a~v 225 (421)
|.+.|. +.+...|..++
T Consensus 163 ~~~~~~-----~~l~~~~~~~~ 179 (183)
T cd01453 163 KVILDE-----THLKELLLEHV 179 (183)
T ss_pred EeeCCH-----HHHHHHHHhcC
Confidence 988887 67777776543
No 18
>PRK09453 phosphodiesterase; Provisional
Probab=76.30 E-value=8.6 Score=35.11 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=40.9
Q ss_pred EEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEE--EecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeec
Q 014659 127 IGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI--LTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGR 202 (421)
Q Consensus 127 ~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~--f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GR 202 (421)
++++|| +|.....+.++++.+++.+++.| ||+ +.|.-...+.......+++.+.++++ +. ++-.|.|-
T Consensus 3 i~viSD--~Hg~~~~~~~~l~~~~~~~~d~i-i~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~---~~--~v~~V~GN 72 (182)
T PRK09453 3 LMFASD--THGSLPATEKALELFAQSGADWL-VHLGDVLYHGPRNPLPEGYAPKKVAELLNAY---AD--KIIAVRGN 72 (182)
T ss_pred EEEEEe--ccCCHHHHHHHHHHHHhcCCCEE-EEcccccccCcCCCCccccCHHHHHHHHHhc---CC--ceEEEccC
Confidence 578998 89999999999999988888655 774 23321111111111134444445554 43 56666665
No 19
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=75.84 E-value=8 Score=34.64 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEEE
Q 014659 139 LDQLQLLLKGASERGAKRIRLHIL 162 (421)
Q Consensus 139 ~~Hl~al~~~a~~~gv~~v~vH~f 162 (421)
.+++...+++|++.|++.+.+|..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g 93 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECT
T ss_pred HHHHHHHHHHHHHhCCCceeecCc
Confidence 899999999999999999989865
No 20
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=68.37 E-value=20 Score=34.56 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCC--C---chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCC
Q 014659 137 SRLDQLQLLLKGASERGAKRIRLHILTDGRDVLD--G---SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYE 211 (421)
Q Consensus 137 Sh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P--~---S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D 211 (421)
.-.+.+..+.+.+++.|++ +.+|+-...-=..| . .+.+++++.-+.++.+ |.. .|..-.|++. ..+| .
T Consensus 42 ~~~~~~~~l~~~~~~~gl~-ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~l---Ga~-~vv~h~g~~~-~~~~-e 114 (273)
T smart00518 42 LSEETAEKFKEALKENNID-VSVHAPYLINLASPDKEKVEKSIERLIDEIKRCEEL---GIK-ALVFHPGSYL-KQSK-E 114 (273)
T ss_pred CCHHHHHHHHHHHHHcCCC-EEEECCceecCCCCCHHHHHHHHHHHHHHHHHHHHc---CCC-EEEEcccccc-CCCH-H
Confidence 3446788899999999994 88997332211222 1 2234455554544555 764 5666678776 5566 6
Q ss_pred CChHHHHHHHHHHH
Q 014659 212 NDWDVVKRGWDAQV 225 (421)
Q Consensus 212 ~rW~Rv~~ay~a~v 225 (421)
..|++..++++.++
T Consensus 115 ~~~~~~~~~l~~l~ 128 (273)
T smart00518 115 EALNRIIESLNEVI 128 (273)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777766666554
No 21
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=66.30 E-value=16 Score=32.53 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=35.6
Q ss_pred hHhhhhhhc-C-CCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCC
Q 014659 111 GFNYIKPSF-E-TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVL 169 (421)
Q Consensus 111 ~l~~~~~~~-~-~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~ 169 (421)
.|..+.+.+ . .+.-+.+=|+|||--++-..+.....+.+++.|+ .||++.=|.+.+
T Consensus 88 al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi---~i~~i~ig~~~~ 145 (180)
T cd01467 88 AIGLAIKRLKNSEAKERVIVLLTDGENNAGEIDPATAAELAKNKGV---RIYTIGVGKSGS 145 (180)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCC---EEEEEEecCCCC
Confidence 344444444 2 2345788899999766543344455677788876 578887776543
No 22
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=64.90 E-value=5.1 Score=42.17 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=25.6
Q ss_pred CCcEEEEEEcccCCCCCCCCCccccCCCCcHHHHHhh
Q 014659 15 NNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKS 51 (421)
Q Consensus 15 ~~pvvLiIlDGwG~~~~~~gNAi~~A~tP~~D~L~~~ 51 (421)
+++||+|.+||+|..- -..++...++|||.+|.++
T Consensus 12 ~~~vvvi~vDGl~~~~--l~~~~~~g~~P~L~~l~~~ 46 (408)
T TIGR02335 12 QRPTVVICVDGCDPEY--INRGIADGVAPFIAELTGF 46 (408)
T ss_pred CCCEEEEEeCCCCHHH--HHhhhhcCCCchHHHHHhc
Confidence 4689999999999531 1233445689999999875
No 23
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.69 E-value=13 Score=35.76 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCC----CchHHHHHHHHHHHHHHhcCCCCceEE
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLD----GSSVGFVETIEKDLAELRGKGVDAQIA 197 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P----~S~~~yl~~l~~~l~~~~~~g~g~~IA 197 (421)
.++++...+++|+..|++.+.+|....|+...+ +...+.|++|.+..++. |+ +||
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~---gv--~l~ 146 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENI---GM--DLI 146 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc---CC--EEE
Confidence 578999999999999999999998766654333 12223455555544444 66 777
No 24
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=58.77 E-value=11 Score=40.38 Aligned_cols=32 Identities=6% Similarity=0.031 Sum_probs=24.9
Q ss_pred EEEEEEcccCCCCCC-CCC-ccccCCCCcHHHHHhh
Q 014659 18 VAVVVLDGWGEFKPD-KYN-CIHVADTPTMDSFKKS 51 (421)
Q Consensus 18 vvLiIlDGwG~~~~~-~gN-Ai~~A~tP~~D~L~~~ 51 (421)
||||+.|-++...-. -|| . .+.|||||+|.++
T Consensus 5 IllI~~Dd~r~d~lg~~G~~~--~~~TPnLD~LA~e 38 (500)
T TIGR03417 5 ILILMADQLNGTLLPDYGPAR--WLHAPNLKRLAAR 38 (500)
T ss_pred EEEEEeCCCCccccccCCCCC--cCCCCcHHHHHHh
Confidence 999999999966432 355 3 3689999999876
No 25
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.62 E-value=34 Score=32.99 Aligned_cols=121 Identities=18% Similarity=0.276 Sum_probs=72.1
Q ss_pred cccCCccceeccchHHHHHHHhcCC-CccchhHhh-hhhhc-CCCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeE
Q 014659 81 HNALGAGRIFAQGAKLVDLALASGK-IYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRI 157 (421)
Q Consensus 81 HlniGAGRvv~Q~l~rI~~aI~~g~-~~~n~~l~~-~~~~~-~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v 157 (421)
.+.+|||-|.- .....++++.|. |.=.|.+.. +++.+ +.+-+.+- |+|+--+ +..|.+.|++-|
T Consensus 67 ~~~vGaGTV~~--~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iP------G~~T~~E-----~~~A~~~Gad~v 133 (213)
T PRK06552 67 EVLIGAGTVLD--AVTARLAILAGAQFIVSPSFNRETAKICNLYQIPYLP------GCMTVTE-----IVTALEAGSEIV 133 (213)
T ss_pred CeEEeeeeCCC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEEC------CcCCHHH-----HHHHHHcCCCEE
Confidence 47899999975 567789999884 445666644 55555 34555555 5665433 334557888644
Q ss_pred EEEEEecCCCCCCCchHHHHHHHHHHHH----------------HHhcCCCCceEEEEeecccccccCCCCChHHHHHHH
Q 014659 158 RLHILTDGRDVLDGSSVGFVETIEKDLA----------------ELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGW 221 (421)
Q Consensus 158 ~vH~f~DGRDt~P~S~~~yl~~l~~~l~----------------~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay 221 (421)
=+|- ..+ -+.+|++.|..-+. ++.+.|. ....+++-.+ .-.. .++|+.+++.-
T Consensus 134 --klFP----a~~-~G~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aGa--~~vavgs~l~-~~~~-~~~~~~i~~~a 202 (213)
T PRK06552 134 --KLFP----GST-LGPSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAGA--DAVGIGGELN-KLAS-QGDFDLITEKA 202 (213)
T ss_pred --EECC----ccc-CCHHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCCC--cEEEEchHHh-Cccc-cCCHHHHHHHH
Confidence 3443 223 45888887764332 2222343 3444555555 4455 77998887765
Q ss_pred HHHH
Q 014659 222 DAQV 225 (421)
Q Consensus 222 ~a~v 225 (421)
+.++
T Consensus 203 ~~~~ 206 (213)
T PRK06552 203 KKYM 206 (213)
T ss_pred HHHH
Confidence 5544
No 26
>COG3731 SrlB Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism]
Probab=56.19 E-value=11 Score=33.95 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=22.2
Q ss_pred ccceEEEeecCCccccCCCCCceEEEccCCC
Q 014659 357 KFGHVTFFWNGNRSGYFDSNLEEYVEIPSDS 387 (421)
Q Consensus 357 KyaHVTfFfNGG~e~~f~~~gE~R~lvpSpk 387 (421)
--+|||.-|||..+..| ||+-..-=|-|+
T Consensus 80 ElGHvti~FdG~~~ae~--PG~I~vs~p~P~ 108 (123)
T COG3731 80 ELGHVTIRFDGATEAEF--PGTIHVSGPVPD 108 (123)
T ss_pred hhCcEEEEECCCccccc--CCeEEecCCCch
Confidence 35899999999999999 888554434443
No 27
>PRK13685 hypothetical protein; Provisional
Probab=56.07 E-value=38 Score=34.21 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=44.1
Q ss_pred EEEEeecCCCccccH-----HHHHHHHHHHHHcCCCeEEEEEEecCCC----------CCCCchHHHHHHHHHHHHHHhc
Q 014659 125 HLIGLLSDGGVHSRL-----DQLQLLLKGASERGAKRIRLHILTDGRD----------VLDGSSVGFVETIEKDLAELRG 189 (421)
Q Consensus 125 Hl~GLlSDGGVHSh~-----~Hl~al~~~a~~~gv~~v~vH~f~DGRD----------t~P~S~~~yl~~l~~~l~~~~~ 189 (421)
+++ |+|||.-++-. ......++.|++.|++ ||.+.=|.+ +.+.-....|++| ++.
T Consensus 196 ~II-LlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~---i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~i----A~~-- 265 (326)
T PRK13685 196 RIV-LMSDGKETVPTNPDNPRGAYTAARTAKDQGVP---ISTISFGTPYGSVEINGQRQPVPVDDESLKKI----AQL-- 265 (326)
T ss_pred EEE-EEcCCCCCCCCCCCCcccHHHHHHHHHHcCCe---EEEEEECCCCCCcCcCCceeeecCCHHHHHHH----HHh--
Confidence 444 99999877532 2234567788888883 555553432 1112222233333 222
Q ss_pred CCCCceEEEEeecccccccCCCCChHHHHHHHHHHHhC
Q 014659 190 KGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLG 227 (421)
Q Consensus 190 ~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g 227 (421)
-.|||| -.+. =+-.+++|+.|-.-
T Consensus 266 ---------tgG~~~-~~~~----~~~L~~if~~I~~~ 289 (326)
T PRK13685 266 ---------SGGEFY-TAAS----LEELRAVYATLQQQ 289 (326)
T ss_pred ---------cCCEEE-EcCC----HHHHHHHHHHHHHH
Confidence 157999 4443 25678888887643
No 28
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=52.55 E-value=57 Score=32.02 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=26.9
Q ss_pred EEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecC
Q 014659 125 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG 165 (421)
Q Consensus 125 Hl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DG 165 (421)
..+=|+|||.-++...-+..+++.|++.++ .||+|.=|
T Consensus 166 k~iIllTDG~~~~~~~~~~~~~~~~~~~~v---~vy~I~~~ 203 (296)
T TIGR03436 166 KALIVISDGGDNRSRDTLERAIDAAQRADV---AIYSIDAR 203 (296)
T ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHcCC---EEEEeccC
Confidence 346788888777777777777877777654 56666554
No 29
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=51.11 E-value=37 Score=29.63 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=39.0
Q ss_pred hHhhhhhhc-CCCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHH
Q 014659 111 GFNYIKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 180 (421)
Q Consensus 111 ~l~~~~~~~-~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l 180 (421)
+|+.+++.. ..+....+=|+|||..-+-.+.+...++.+. .++.||+|.=|.++.+ .+|++|
T Consensus 83 aL~~a~~~~~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~----~~~~i~~~~~g~~~~~----~~L~~L 145 (155)
T PF13768_consen 83 ALRAALALLQRPGCVRAIILLTDGQPVSGEEEILDLVRRAR----GHIRIFTFGIGSDADA----DFLREL 145 (155)
T ss_pred HHHHHHHhcccCCCccEEEEEEeccCCCCHHHHHHHHHhcC----CCceEEEEEECChhHH----HHHHHH
Confidence 344444432 2357788889999995444555555554322 5688999988886664 555555
No 30
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.
Probab=50.40 E-value=14 Score=33.08 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.4
Q ss_pred cceEEEeecCCccccCCCCCceEEE
Q 014659 358 FGHVTFFWNGNRSGYFDSNLEEYVE 382 (421)
Q Consensus 358 yaHVTfFfNGG~e~~f~~~gE~R~l 382 (421)
-+|+|++|+|..+..+ ||.-.+-
T Consensus 81 LGHiTi~F~g~~~~~l--pG~I~v~ 103 (121)
T TIGR00849 81 LGHITVRFDGSNVAEF--PGTVHVE 103 (121)
T ss_pred cCCEEEEECCCCCccc--CCEEEEc
Confidence 4899999999999999 8875553
No 31
>PRK01060 endonuclease IV; Provisional
Probab=50.30 E-value=77 Score=30.59 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHHcCCC--eEEEEEEecCCCCCCCc-----hHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCC
Q 014659 138 RLDQLQLLLKGASERGAK--RIRLHILTDGRDVLDGS-----SVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRY 210 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~--~v~vH~f~DGRDt~P~S-----~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~ 210 (421)
--+.+.++-+++++.|++ .+.+|+-...+-+.|.. +.+++++..+..+++ |+. .|..-.|+++ -..+.
T Consensus 45 ~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~l---ga~-~vv~h~G~~~-~~~~~ 119 (281)
T PRK01060 45 EELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAAL---GAK-LLVFHPGSHL-GDIDE 119 (281)
T ss_pred CHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHc---CCC-EEEEcCCcCC-CCCcH
Confidence 344577788889999995 37889977666666644 244455444444454 764 6666788765 33331
Q ss_pred CCChHHHHHHHHHH
Q 014659 211 ENDWDVVKRGWDAQ 224 (421)
Q Consensus 211 D~rW~Rv~~ay~a~ 224 (421)
+..|++..++.+.+
T Consensus 120 ~~~~~~~~e~l~~l 133 (281)
T PRK01060 120 EDCLARIAESLNEA 133 (281)
T ss_pred HHHHHHHHHHHHHH
Confidence 22455544444433
No 32
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=50.01 E-value=59 Score=28.41 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=25.3
Q ss_pred eEEEEeecCCCcccc---HHHHHHHHHHHHHcCCCeEEEEEEecC
Q 014659 124 LHLIGLLSDGGVHSR---LDQLQLLLKGASERGAKRIRLHILTDG 165 (421)
Q Consensus 124 lHl~GLlSDGGVHSh---~~Hl~al~~~a~~~gv~~v~vH~f~DG 165 (421)
-+++ |+|||...+. .+.+..+++.+++.| |.||+|.=|
T Consensus 98 ~~iv-l~TDG~~~~~~~~~~~~~~~~~~~~~~~---v~i~~i~~g 138 (170)
T cd01465 98 NRIL-LATDGDFNVGETDPDELARLVAQKRESG---ITLSTLGFG 138 (170)
T ss_pred eEEE-EEeCCCCCCCCCCHHHHHHHHHHhhcCC---eEEEEEEeC
Confidence 5565 9999987654 344555555555555 468888888
No 33
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=49.68 E-value=19 Score=37.25 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=27.9
Q ss_pred eecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCC
Q 014659 129 LLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 167 (421)
Q Consensus 129 LlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRD 167 (421)
|+|=||+|| +|+++....|++.|++-|. ++++.-
T Consensus 67 lvT~GgiQS--Nh~r~tAavA~~lGl~~v~---ile~~~ 100 (323)
T COG2515 67 LVTYGGIQS--NHVRQTAAVAAKLGLKCVL---ILENIE 100 (323)
T ss_pred EEEecccch--hHHHHHHHHHHhcCCcEEE---EEeccc
Confidence 689999998 6999999999999998664 445543
No 34
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=49.60 E-value=88 Score=30.38 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=58.7
Q ss_pred eccCccCCCCCCCCCCcccccccCCccceeccchHHHHHHHhcCCCccchhHhhhhhhcCCCceEEEEeecCCCccccHH
Q 014659 61 AHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLD 140 (421)
Q Consensus 61 AsG~~VGLP~~GqMGNSEVGHlniGAGRvv~Q~l~rI~~aI~~g~~~~n~~l~~~~~~~~~~~lHl~GLlSDGGVHSh~~ 140 (421)
|....+|+| ... + .+=|-++.+.. .+++++|. -+.+.++.+.. +-.+|||+-+|+ .++..+
T Consensus 31 ad~iElgip-~sd-----p----~adG~~i~~~~---~~a~~~g~---~~~v~~vr~~~-~~Pl~lM~y~n~--~~~~~~ 91 (244)
T PRK13125 31 VDILELGIP-PKY-----P----KYDGPVIRKSH---RKVKGLDI---WPLLEEVRKDV-SVPIILMTYLED--YVDSLD 91 (244)
T ss_pred CCEEEECCC-CCC-----C----CCCCHHHHHHH---HHHHHcCc---HHHHHHHhccC-CCCEEEEEecch--hhhCHH
Confidence 667778998 322 2 22355555553 66677777 12222232222 237899999999 455544
Q ss_pred HHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHH
Q 014659 141 QLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (421)
Q Consensus 141 Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~ 187 (421)
. .++.+++.|+.-|.|| |.++. +...++++.+.++++
T Consensus 92 ~---~i~~~~~~Gadgvii~------dlp~e-~~~~~~~~~~~~~~~ 128 (244)
T PRK13125 92 N---FLNMARDVGADGVLFP------DLLID-YPDDLEKYVEIIKNK 128 (244)
T ss_pred H---HHHHHHHcCCCEEEEC------CCCCC-cHHHHHHHHHHHHHc
Confidence 4 5777888999889888 33333 234566666666665
No 35
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=49.32 E-value=1e+02 Score=30.51 Aligned_cols=54 Identities=17% Similarity=0.377 Sum_probs=36.5
Q ss_pred ceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEE-EecCCCCCCCchHHHHHHHHHHHHHH
Q 014659 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI-LTDGRDVLDGSSVGFVETIEKDLAEL 187 (421)
Q Consensus 123 ~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~-f~DGRDt~P~S~~~yl~~l~~~l~~~ 187 (421)
.+|+.-=+|| ++.+...++.|+++|. +|.+.. ++|+ +..-.+|+.++-+.+.+.
T Consensus 107 ~iri~~~~~~------~~~~~~~i~~ak~~G~-~v~~~i~~~~~----~~~~~~~~~~~~~~~~~~ 161 (275)
T cd07937 107 IFRIFDALND------VRNLEVAIKAVKKAGK-HVEGAICYTGS----PVHTLEYYVKLAKELEDM 161 (275)
T ss_pred EEEEeecCCh------HHHHHHHHHHHHHCCC-eEEEEEEecCC----CCCCHHHHHHHHHHHHHc
Confidence 6777666666 8999999999999996 555543 3455 344455666665555555
No 36
>PRK10377 PTS system glucitol/sorbitol-specific transporter subunit IIA; Provisional
Probab=47.24 E-value=16 Score=32.51 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=19.5
Q ss_pred cceEEEeecCCccccCCCCCceEEE
Q 014659 358 FGHVTFFWNGNRSGYFDSNLEEYVE 382 (421)
Q Consensus 358 yaHVTfFfNGG~e~~f~~~gE~R~l 382 (421)
-+|+|+.|+|..+..+ ||.-.+-
T Consensus 81 LGHiTi~F~g~~~~~l--pG~I~v~ 103 (120)
T PRK10377 81 LGHVTLRFDGLNEAEF--PGTVHVA 103 (120)
T ss_pred cCCEEEEECCCCCccc--CCEEEEc
Confidence 4899999999999989 8876554
No 37
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=47.24 E-value=1.3e+02 Score=25.77 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=41.7
Q ss_pred ceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeec
Q 014659 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGR 202 (421)
Q Consensus 123 ~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GR 202 (421)
.--.+=|+|||.-+ .-....++.+++.| |.||++.=|.+..+ ...+++| .+. ..|+
T Consensus 99 ~~~~iv~iTDG~~~---~~~~~~~~~~~~~~---i~i~~v~~~~~~~~---~~~l~~l----a~~-----------tgG~ 154 (172)
T PF13519_consen 99 RRRAIVLITDGEDN---SSDIEAAKALKQQG---ITIYTVGIGSDSDA---NEFLQRL----AEA-----------TGGR 154 (172)
T ss_dssp EEEEEEEEES-TTH---CHHHHHHHHHHCTT---EEEEEEEES-TT-E---HHHHHHH----HHH-----------TEEE
T ss_pred CceEEEEecCCCCC---cchhHHHHHHHHcC---CeEEEEEECCCccH---HHHHHHH----HHh-----------cCCE
Confidence 55666789999766 22224677777666 56899988877776 2233333 222 1588
Q ss_pred ccccccCCCCChHHHHHHHHHH
Q 014659 203 MYVTMDRYENDWDVVKRGWDAQ 224 (421)
Q Consensus 203 yyvaMDR~D~rW~Rv~~ay~a~ 224 (421)
|| .-+ +.=+.+..+++.|
T Consensus 155 ~~-~~~---~~~~~l~~~~~~I 172 (172)
T PF13519_consen 155 YF-HVD---NDPEDLDDAFQQI 172 (172)
T ss_dssp EE-EE----SSSHHHHHHHHH-
T ss_pred EE-Eec---CCHHHHHHHHhcC
Confidence 88 432 1126777776653
No 38
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.91 E-value=50 Score=32.32 Aligned_cols=120 Identities=21% Similarity=0.240 Sum_probs=75.1
Q ss_pred ccccCCccceeccchHHHHHHHhcC-CCccchhHhh-hhhhc-CCCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCe
Q 014659 80 GHNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKR 156 (421)
Q Consensus 80 GHlniGAGRvv~Q~l~rI~~aI~~g-~~~~n~~l~~-~~~~~-~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~ 156 (421)
.++.+|||-|+- ......+++.| +|.=.|.+.. +++.+ +.+-+.+-|.+|..-+ ..|.+.|++
T Consensus 69 p~~~vGaGTVl~--~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi-----------~~A~~~Ga~- 134 (222)
T PRK07114 69 PGMILGVGSIVD--AATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEI-----------GYAEELGCE- 134 (222)
T ss_pred CCeEEeeEeCcC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHH-----------HHHHHCCCC-
Confidence 468999999975 56678899988 5556666654 55555 4578999999987643 367788885
Q ss_pred EEEEEEecCCCCCCCchHHHHHHHH------------------HHHHHHhcCCCCceEEEEeecccc---cccCCCCChH
Q 014659 157 IRLHILTDGRDVLDGSSVGFVETIE------------------KDLAELRGKGVDAQIASGGGRMYV---TMDRYENDWD 215 (421)
Q Consensus 157 v~vH~f~DGRDt~P~S~~~yl~~l~------------------~~l~~~~~~g~g~~IASv~GRyyv---aMDR~D~rW~ 215 (421)
.|=+|--+ .-+..|++.|. +-+.+..+.| -+|-+.|..-+ .++ .++|+
T Consensus 135 -~vKlFPA~-----~~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG---a~avg~Gs~L~~~~~~~--~~~~~ 203 (222)
T PRK07114 135 -IVKLFPGS-----VYGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG---VTCVGMGSKLIPKEALA--AKDYA 203 (222)
T ss_pred -EEEECccc-----ccCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC---CEEEEEChhhcCccccc--cccHH
Confidence 25555311 23577886665 2233322223 35666677641 122 46888
Q ss_pred HHHHHHHHH
Q 014659 216 VVKRGWDAQ 224 (421)
Q Consensus 216 Rv~~ay~a~ 224 (421)
.+++..+..
T Consensus 204 ~i~~~a~~~ 212 (222)
T PRK07114 204 GIEQKVREA 212 (222)
T ss_pred HHHHHHHHH
Confidence 777654433
No 39
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=45.68 E-value=1.1e+02 Score=29.04 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=44.9
Q ss_pred ceEEEEeecCCCcccc-------HHHHHHHHHHHHHcCCCeEEEEEEecCCCCC---CCc----hHHHHHHHHHHHHHH
Q 014659 123 TLHLIGLLSDGGVHSR-------LDQLQLLLKGASERGAKRIRLHILTDGRDVL---DGS----SVGFVETIEKDLAEL 187 (421)
Q Consensus 123 ~lHl~GLlSDGGVHSh-------~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~---P~S----~~~yl~~l~~~l~~~ 187 (421)
.+-.++-+|+.-.+.. ++++...+++|++.|++.|.+|.-....... |.. ..++++++.+...+.
T Consensus 60 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~ 138 (274)
T COG1082 60 EITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL 138 (274)
T ss_pred EEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 5666666666434444 8889999999999999888888865444433 333 467777777766665
No 40
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=45.07 E-value=52 Score=27.25 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=33.7
Q ss_pred CceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCC
Q 014659 122 GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGR 166 (421)
Q Consensus 122 ~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGR 166 (421)
+..+++=++|||..++...-+...++.+++.+++ ||++.=|-
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~---v~~v~~g~ 141 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGIT---VYTIGIGD 141 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCE---EEEEEcCC
Confidence 3789999999999998887888899999998774 55554443
No 41
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=43.91 E-value=38 Score=32.78 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEE
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIA 197 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IA 197 (421)
+++++...+++|++.|++.|.+|.-.......+..-..+++.|...++...+.|+ +|+
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi--~l~ 140 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGV--VIA 140 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCC--EEE
Confidence 5789999999999999998888765432222222334444444444433223344 444
No 42
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=43.66 E-value=76 Score=31.13 Aligned_cols=104 Identities=23% Similarity=0.279 Sum_probs=64.7
Q ss_pred eccCccCCCCCCCCCCcccccccCCc-cc---eec--cchHHHHHHHhcC-------CCccchhHhhhhhhcCCCceEEE
Q 014659 61 AHGSAVGLPTEDDMGNSEVGHNALGA-GR---IFA--QGAKLVDLALASG-------KIYQDEGFNYIKPSFETGTLHLI 127 (421)
Q Consensus 61 AsG~~VGLP~~GqMGNSEVGHlniGA-GR---vv~--Q~l~rI~~aI~~g-------~~~~n~~l~~~~~~~~~~~lHl~ 127 (421)
+.|++|=|- .+=+||-|+.-..++. |. +++ +....+++-+.+. -+..+..+.++++++++|. ++
T Consensus 118 ~~g~gvIl~-t~H~GnwE~~~~~l~~~~~~~~~i~~~~~n~~~~~~~~~~R~~~g~~~i~~~~~~~~~~~~Lk~g~--~v 194 (295)
T PF03279_consen 118 AEGRGVILL-TGHFGNWELAGRALARRGPPVAVIYRPQKNPYIDRLLNKLRERFGIELIPKGEGIRELIRALKEGG--IV 194 (295)
T ss_pred hcCCCCEEe-CcCcChHHHHHHHHHhhCCceEEEecCCccHhHHHHHHHHHHhcCCeEecchhhHHHHHHHhccCC--EE
Confidence 467777776 7889999986544331 11 122 1234555544322 2234444677777774443 99
Q ss_pred EeecCCCcccc-----------HHHHHHHHHHHHHcCCCeEEEEEEecCCC
Q 014659 128 GLLSDGGVHSR-----------LDQLQLLLKGASERGAKRIRLHILTDGRD 167 (421)
Q Consensus 128 GLlSDGGVHSh-----------~~Hl~al~~~a~~~gv~~v~vH~f~DGRD 167 (421)
++++|...... ..-......+|.+.|++=|.+++.-++.-
T Consensus 195 ~~l~Dq~~~~~~~~~v~FfG~~a~~~~g~a~lA~~~~apvvp~~~~r~~~~ 245 (295)
T PF03279_consen 195 GLLGDQDPGKKDGVFVPFFGRPASTPTGPARLARKTGAPVVPVFAYREPDG 245 (295)
T ss_pred EEEECCCCCCCCceEEeECCeecccccHHHHHHHHhCCcEEEEEEEEeCCC
Confidence 99999765443 22345678899999998888888776554
No 43
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.30 E-value=4 Score=41.44 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=19.9
Q ss_pred CCEEEEee----cCcchHHHHHHHhc-cCCC
Q 014659 273 GDAVVTFN----FRADRMVMLAKALE-YEDF 298 (421)
Q Consensus 273 gD~Vif~N----FR~DRarqlt~al~-~~~f 298 (421)
|--+||.. |||||++||+.-+. +|||
T Consensus 149 ~Gk~ifIDTEgtFrpdRi~~IAe~~~~d~d~ 179 (335)
T KOG1434|consen 149 GGKAIFIDTEGTFRPDRIKDIAERFKVDPDF 179 (335)
T ss_pred CceEEEEecCCccchHHHHHHHHHhCCCHHH
Confidence 34678875 99999999998774 4553
No 44
>PRK13759 arylsulfatase; Provisional
Probab=42.27 E-value=17 Score=38.78 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=24.0
Q ss_pred EEEEEEcccCCCCC-CCCCccccCCCCcHHHHHhh
Q 014659 18 VAVVVLDGWGEFKP-DKYNCIHVADTPTMDSFKKS 51 (421)
Q Consensus 18 vvLiIlDGwG~~~~-~~gNAi~~A~tP~~D~L~~~ 51 (421)
+|||++|-+|...- .-|| ..+.|||||+|.++
T Consensus 9 Il~I~~Ddlr~d~l~~~G~--~~~~TPnld~La~~ 41 (485)
T PRK13759 9 IILIMVDQMRGDCLGCNGN--KAVETPNLDMLASE 41 (485)
T ss_pred EEEEEECCCCHHHHHhcCC--CcCCCccHHHHHhc
Confidence 99999999986422 2244 24689999999876
No 45
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=40.36 E-value=65 Score=31.12 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEEe
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHILT 163 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~f~ 163 (421)
.++.+...+++|++.|++.|.+|...
T Consensus 97 ~~~~~~~~i~~a~~lG~~~i~~~~~~ 122 (283)
T PRK13209 97 ALEIMRKAIQLAQDLGIRVIQLAGYD 122 (283)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 46788899999999999988777544
No 46
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=39.96 E-value=66 Score=29.85 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHH
Q 014659 137 SRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (421)
Q Consensus 137 Sh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~ 187 (421)
-+++.|..+++++.+.-.+.++||++|=--+..|..-...|++|.+.|.+.
T Consensus 33 hQi~Nl~~F~El~vk~~~~~~~i~LvT~~d~~~~~~Q~~~l~~i~~sl~~~ 83 (148)
T cd02685 33 HQIRNFLRFCELVVKPPCELKYIHLVTGEDEDNGKQQIEALEEIKQSLASH 83 (148)
T ss_pred HHHHHHHHHHHHHhcCccceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhC
Confidence 378899999999998666789999999443345667788999999988876
No 47
>PRK13753 dihydropteroate synthase; Provisional
Probab=39.13 E-value=1.7e+02 Score=29.78 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=44.4
Q ss_pred eEEEEee-------cCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHh
Q 014659 124 LHLIGLL-------SDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELR 188 (421)
Q Consensus 124 lHl~GLl-------SDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~ 188 (421)
.|+||.| ||||.+...|...+=++...+.|..=|=|=+=+..-...|-|..+=++.+...++.+.
T Consensus 2 ~~iMGIlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~ 73 (279)
T PRK13753 2 VTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALS 73 (279)
T ss_pred ceEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5899987 9999998888888888888899986333322222222334455666776667777764
No 48
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=37.31 E-value=93 Score=29.28 Aligned_cols=76 Identities=8% Similarity=0.047 Sum_probs=47.5
Q ss_pred ccchHHHHHHHhc--------CCCccchhHhhhhhhc-C------CCceEEEEeecCCCccccHHHHHHHHHHHHHcCCC
Q 014659 91 AQGAKLVDLALAS--------GKIYQDEGFNYIKPSF-E------TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAK 155 (421)
Q Consensus 91 ~Q~l~rI~~aI~~--------g~~~~n~~l~~~~~~~-~------~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~ 155 (421)
+++...+.++|+. |.-.-...|..+.+.+ . ++....+=|++||+-.++-+......+.++++|+
T Consensus 84 ~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI- 162 (193)
T cd01477 84 LQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGI- 162 (193)
T ss_pred ccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCC-
Confidence 3455566666662 2222334554444443 1 1246778899998776664556677888899997
Q ss_pred eEEEEEEecCCCCC
Q 014659 156 RIRLHILTDGRDVL 169 (421)
Q Consensus 156 ~v~vH~f~DGRDt~ 169 (421)
-||++.-|.+..
T Consensus 163 --~i~tVGiG~~~d 174 (193)
T cd01477 163 --AIITVAFTQDES 174 (193)
T ss_pred --EEEEEEeCCCCC
Confidence 488888887644
No 49
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=36.71 E-value=1.6e+02 Score=25.91 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHc-CCCeEEEEEEecCCCCC
Q 014659 140 DQLQLLLKGASER-GAKRIRLHILTDGRDVL 169 (421)
Q Consensus 140 ~Hl~al~~~a~~~-gv~~v~vH~f~DGRDt~ 169 (421)
-++..+++.+.+. |+ .||.+.+|.|+.
T Consensus 85 ~d~~~~~~~l~~~~gv---~l~~~~~~~d~~ 112 (140)
T cd03770 85 LKVGLYMEILFPKKGV---RFIAINDGVDSA 112 (140)
T ss_pred HHHHHHHHHHHhhcCc---EEEEecCCcCCC
Confidence 3444455555554 65 466666666654
No 50
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=36.58 E-value=2.1e+02 Score=27.84 Aligned_cols=68 Identities=22% Similarity=0.195 Sum_probs=43.2
Q ss_pred ceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCC-chHHHHHHHHHHHHHHhcCCCCceEEEEee
Q 014659 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDG-SSVGFVETIEKDLAELRGKGVDAQIASGGG 201 (421)
Q Consensus 123 ~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~-S~~~yl~~l~~~l~~~~~~g~g~~IASv~G 201 (421)
++--++++|| +|+....+.++++.++++++. .+||+ |==|... ....|.+ +.+.+..+ +. ++-.|-|
T Consensus 3 ~~~kIl~iSD--iHgn~~~le~l~~~~~~~~~D-~vv~~---GDl~~~g~~~~~~~~-~l~~l~~l---~~--pv~~V~G 70 (224)
T cd07388 3 TVRYVLATSN--PKGDLEALEKLVGLAPETGAD-AIVLI---GNLLPKAAKSEDYAA-FFRILGEA---HL--PTFYVPG 70 (224)
T ss_pred ceeEEEEEEe--cCCCHHHHHHHHHHHhhcCCC-EEEEC---CCCCCCCCCHHHHHH-HHHHHHhc---CC--ceEEEcC
Confidence 4556889999 999999999999999999986 44665 4333332 2333332 22223343 43 5666777
Q ss_pred c
Q 014659 202 R 202 (421)
Q Consensus 202 R 202 (421)
-
T Consensus 71 N 71 (224)
T cd07388 71 P 71 (224)
T ss_pred C
Confidence 4
No 51
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=36.24 E-value=1.4e+02 Score=25.93 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=10.5
Q ss_pred EEEEEEecCCCCCC
Q 014659 157 IRLHILTDGRDVLD 170 (421)
Q Consensus 157 v~vH~f~DGRDt~P 170 (421)
-.|-+||||.++..
T Consensus 98 ~~ivl~TDG~~~~~ 111 (170)
T cd01465 98 NRILLATDGDFNVG 111 (170)
T ss_pred eEEEEEeCCCCCCC
Confidence 34679999998644
No 52
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=35.85 E-value=1.4e+02 Score=30.58 Aligned_cols=52 Identities=25% Similarity=0.305 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCC
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGV 192 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~ 192 (421)
-++.|..|++.|++.||. ++=++.=|-|.. .|..+-++.|.+++.++.+.|+
T Consensus 54 el~~l~~L~~~a~~~~V~--Fv~aisPg~~~~-~s~~~d~~~L~~K~~ql~~lGv 105 (306)
T PF07555_consen 54 ELAELKELADAAKANGVD--FVYAISPGLDIC-YSSEEDFEALKAKFDQLYDLGV 105 (306)
T ss_dssp HHHHHHHHHHHHHHTT-E--EEEEEBGTTT---TSHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHcCCE--EEEEECcccccc-cCcHHHHHHHHHHHHHHHhcCC
Confidence 468899999999999996 455555555544 7788889999999999887776
No 53
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=35.83 E-value=35 Score=36.13 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=30.4
Q ss_pred CcEEEEEEcccCCCCCCCCCccccCCCCcHHHHHhhCC
Q 014659 16 NIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAP 53 (421)
Q Consensus 16 ~pvvLiIlDGwG~~~~~~gNAi~~A~tP~~D~L~~~yP 53 (421)
++|.|++||.+|++...+...+..+..-++-++++.++
T Consensus 2 ~Rv~liVlDSfGIGa~pDa~~fgd~ganTlgHi~e~~~ 39 (397)
T COG1015 2 KRVFLIVLDSFGIGAAPDAEKFGDVGANTLGHIAEACA 39 (397)
T ss_pred ceEEEEEecCcccCCCccHHHhCCCCchhHHHHHHHcC
Confidence 35999999999999887776666677777777777776
No 54
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=35.43 E-value=1.1e+02 Score=29.63 Aligned_cols=120 Identities=18% Similarity=0.335 Sum_probs=72.2
Q ss_pred cccCCccceeccchHHHHHHHhcC-CCccchhHhh-hhhhc-CCCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeE
Q 014659 81 HNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRI 157 (421)
Q Consensus 81 HlniGAGRvv~Q~l~rI~~aI~~g-~~~~n~~l~~-~~~~~-~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v 157 (421)
++.+|||-|.- .....++++.| +|.=.|.+.. +++.+ +.+-..+-|.++..-+ ..|.+.|.+
T Consensus 59 ~~~vGAGTVl~--~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~TptEi-----------~~A~~~Ga~-- 123 (204)
T TIGR01182 59 DALIGAGTVLN--PEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGIPIIPGVATPSEI-----------MLALELGIT-- 123 (204)
T ss_pred CCEEEEEeCCC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcEECCCCCHHHH-----------HHHHHCCCC--
Confidence 58899999975 56688899988 4555666544 55555 4578888888887643 367788885
Q ss_pred EEEEEecCCCCCCCchHHHHHHHHH----------------HHHHHhcCCCCceEEEEeeccccc--ccCCCCChHHHHH
Q 014659 158 RLHILTDGRDVLDGSSVGFVETIEK----------------DLAELRGKGVDAQIASGGGRMYVT--MDRYENDWDVVKR 219 (421)
Q Consensus 158 ~vH~f~DGRDt~P~S~~~yl~~l~~----------------~l~~~~~~g~g~~IASv~GRyyva--MDR~D~rW~Rv~~ 219 (421)
.|=+|= -..-.+.+|++.|.. -+.+.-+.| -++-+.|..-+- .=. +++|+.+++
T Consensus 124 ~vKlFP----A~~~GG~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aG---a~~vg~Gs~L~~~~~~~-~~~~~~i~~ 195 (204)
T TIGR01182 124 ALKLFP----AEVSGGVKMLKALAGPFPQVRFCPTGGINLANVRDYLAAP---NVACGGGSWLVPKDLIA-AGDWDEITR 195 (204)
T ss_pred EEEECC----chhcCCHHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCC---CEEEEEChhhcCchhhc-cccHHHHHH
Confidence 245552 111124778876652 222222123 466677776411 112 468887776
Q ss_pred HHHH
Q 014659 220 GWDA 223 (421)
Q Consensus 220 ay~a 223 (421)
.-+.
T Consensus 196 ~a~~ 199 (204)
T TIGR01182 196 LARE 199 (204)
T ss_pred HHHH
Confidence 4443
No 55
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=35.02 E-value=1.6e+02 Score=28.56 Aligned_cols=84 Identities=10% Similarity=0.055 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCC--chHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHH
Q 014659 139 LDQLQLLLKGASERGAKRIRLHILTDGRDVLDG--SSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDV 216 (421)
Q Consensus 139 ~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~--S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~R 216 (421)
-+-+..+.++++++|...+.+|+-.++.-..|. --...++.+...++-..+.|+. .|....|++- .-++ +..|++
T Consensus 44 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~-~v~~~~g~~~-~~~~-~~~~~~ 120 (279)
T cd00019 44 KERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIR-LLVFHPGSYL-GQSK-EEGLKR 120 (279)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCC-EEEECCCCCC-CCCH-HHHHHH
Confidence 367888888888883336788876655444443 3444555555555544444764 5555567553 3334 566666
Q ss_pred HHHHHHHHH
Q 014659 217 VKRGWDAQV 225 (421)
Q Consensus 217 v~~ay~a~v 225 (421)
+...++.++
T Consensus 121 ~~~~l~~l~ 129 (279)
T cd00019 121 VIEALNELI 129 (279)
T ss_pred HHHHHHHHH
Confidence 666666555
No 56
>PRK12383 putative mutase; Provisional
Probab=34.98 E-value=35 Score=36.37 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=27.1
Q ss_pred CcEEEEEEcccCCCCCCCCCcc--ccCCCCcHHHHHhhCC
Q 014659 16 NIVAVVVLDGWGEFKPDKYNCI--HVADTPTMDSFKKSAP 53 (421)
Q Consensus 16 ~pvvLiIlDGwG~~~~~~gNAi--~~A~tP~~D~L~~~yP 53 (421)
++++||||||+|++.-..-+.+ .....-++-++.+.+|
T Consensus 2 ~R~~~iVlDs~GiG~~~Da~~~~~~D~ganTl~hi~~~~~ 41 (406)
T PRK12383 2 ARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLP 41 (406)
T ss_pred CeEEEEEecCCCCCCCCCHHHhCCCCCCcchHHHHHHhcC
Confidence 3699999999999988777777 4444455666655443
No 57
>PF03829 PTSIIA_gutA: PTS system glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2F9H_A.
Probab=34.39 E-value=31 Score=30.60 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=14.5
Q ss_pred cceEEEeecCCccccCCCCCceEE
Q 014659 358 FGHVTFFWNGNRSGYFDSNLEEYV 381 (421)
Q Consensus 358 yaHVTfFfNGG~e~~f~~~gE~R~ 381 (421)
-+|+|+.|+|..+.++ ||.-.+
T Consensus 81 LGH~Tl~F~g~~~~~l--pG~I~l 102 (117)
T PF03829_consen 81 LGHITLVFDGAEEAEL--PGTIYL 102 (117)
T ss_dssp HS-EEEE-S-SGGGS---TTEEEE
T ss_pred cCcEEEEECCCCCCCc--CCEEEE
Confidence 4899999999999999 876444
No 58
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=33.74 E-value=1.2e+02 Score=27.06 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=36.6
Q ss_pred hhHhhhhhhc-C-CCceEEEEeecCCCcccc------HHHHHHH---HHHHHHcCCCeEEEEEEecCCCCCCCchHHHHH
Q 014659 110 EGFNYIKPSF-E-TGTLHLIGLLSDGGVHSR------LDQLQLL---LKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 178 (421)
Q Consensus 110 ~~l~~~~~~~-~-~~~lHl~GLlSDGGVHSh------~~Hl~al---~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~ 178 (421)
+++..+.+.+ + ...--++=|+|||--+.- +..+... ++.|++.|+ .+|++.=|.|.+| .=..+++
T Consensus 88 ~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi---~v~~igig~~~~~-~~~~~~~ 163 (174)
T cd01454 88 AAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGI---EVFGITIDRDATT-VDKEYLK 163 (174)
T ss_pred HHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCc---EEEEEEecCcccc-chHHHHH
Confidence 3444444444 2 123345778888876642 2244444 455566665 5777777877776 3344444
Q ss_pred HH
Q 014659 179 TI 180 (421)
Q Consensus 179 ~l 180 (421)
++
T Consensus 164 ~~ 165 (174)
T cd01454 164 NI 165 (174)
T ss_pred Hh
Confidence 33
No 59
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=33.45 E-value=1.9e+02 Score=29.38 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=56.2
Q ss_pred ceEEEEee-------cCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCce
Q 014659 123 TLHLIGLL-------SDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQ 195 (421)
Q Consensus 123 ~lHl~GLl-------SDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~ 195 (421)
+-++||.| ||||.|...|...+-++...+.|..=+=|=+=+..-...|-|..+-++++...++.+.+. .+
T Consensus 14 ~~~imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~-~~-- 90 (282)
T PRK11613 14 HPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQR-FE-- 90 (282)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc-CC--
Confidence 56799997 999999999999988888889998633222111113344556667777777666666321 11
Q ss_pred EEEEeecccccccCCCCChHHHHHHHHH
Q 014659 196 IASGGGRMYVTMDRYENDWDVVKRGWDA 223 (421)
Q Consensus 196 IASv~GRyyvaMDR~D~rW~Rv~~ay~a 223 (421)
- -++.|= .+++-.++|.++
T Consensus 91 ------~-~ISIDT--~~~~va~~AL~~ 109 (282)
T PRK11613 91 ------V-WISVDT--SKPEVIRESAKA 109 (282)
T ss_pred ------C-eEEEEC--CCHHHHHHHHHc
Confidence 1 136773 455666666654
No 60
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=31.88 E-value=2.4e+02 Score=25.23 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=21.9
Q ss_pred EEEEEecCCCCCCCc---hHHHHHHHHHHHHHHhcCCCCceEEEE
Q 014659 158 RLHILTDGRDVLDGS---SVGFVETIEKDLAELRGKGVDAQIASG 199 (421)
Q Consensus 158 ~vH~f~DGRDt~P~S---~~~yl~~l~~~l~~~~~~g~g~~IASv 199 (421)
.|-+|+||.++.... ....+++..+..++..+.|+ ++-+|
T Consensus 106 ~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi--~v~~i 148 (174)
T cd01454 106 ILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGI--EVFGI 148 (174)
T ss_pred EEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCc--EEEEE
Confidence 488999999986543 12134444222333333366 56544
No 61
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=31.70 E-value=2.6e+02 Score=27.62 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=47.3
Q ss_pred cCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCC
Q 014659 131 SDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRY 210 (421)
Q Consensus 131 SDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~ 210 (421)
||||++...+.....++...+.|..=+=|=+-+-.-+..+.|...-+++|...++.+++. .+- .++.|
T Consensus 14 ~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~---------~~~-plsiD-- 81 (257)
T TIGR01496 14 SDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQ---------PDV-PISVD-- 81 (257)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc---------CCC-eEEEe--
Confidence 899998888888888888888898634331111112333445565666666666655321 111 22556
Q ss_pred CCChHHHHHHHHH
Q 014659 211 ENDWDVVKRGWDA 223 (421)
Q Consensus 211 D~rW~Rv~~ay~a 223 (421)
-.+++-++.|.++
T Consensus 82 T~~~~vi~~al~~ 94 (257)
T TIGR01496 82 TYRAEVARAALEA 94 (257)
T ss_pred CCCHHHHHHHHHc
Confidence 4556666666654
No 62
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=31.46 E-value=2.5e+02 Score=26.90 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=52.8
Q ss_pred ccCCccceeccchHHHHHHHhcCC-CccchhHhh-hhhhc-CCCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEE
Q 014659 82 NALGAGRIFAQGAKLVDLALASGK-IYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIR 158 (421)
Q Consensus 82 lniGAGRvv~Q~l~rI~~aI~~g~-~~~n~~l~~-~~~~~-~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~ 158 (421)
++||||.|+-. .+++.+++.|. |.-.|.+.. +.+.. ..+...+.| +|+-.+ +..|.+.|++-|-
T Consensus 63 ~~iGaGTV~~~--~~~~~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~G------~~t~~E-----~~~A~~~Gad~vk 129 (206)
T PRK09140 63 ALIGAGTVLSP--EQVDRLADAGGRLIVTPNTDPEVIRRAVALGMVVMPG------VATPTE-----AFAALRAGAQALK 129 (206)
T ss_pred cEEeEEecCCH--HHHHHHHHcCCCEEECCCCCHHHHHHHHHCCCcEEcc------cCCHHH-----HHHHHHcCCCEEE
Confidence 78999999875 47889999883 444454433 44444 346666766 665533 3567778987554
Q ss_pred EEEEecCCCCCCCchHHHHHHHHHHH
Q 014659 159 LHILTDGRDVLDGSSVGFVETIEKDL 184 (421)
Q Consensus 159 vH~f~DGRDt~P~S~~~yl~~l~~~l 184 (421)
+|- +.+ -+.+|++++...+
T Consensus 130 --~Fp----a~~-~G~~~l~~l~~~~ 148 (206)
T PRK09140 130 --LFP----ASQ-LGPAGIKALRAVL 148 (206)
T ss_pred --ECC----CCC-CCHHHHHHHHhhc
Confidence 343 233 4588888876544
No 63
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=30.80 E-value=54 Score=31.35 Aligned_cols=86 Identities=17% Similarity=0.364 Sum_probs=56.9
Q ss_pred ceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEE-EecCCCCCCCchHHHHHHHH----------HHHHHHhcCC
Q 014659 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI-LTDGRDVLDGSSVGFVETIE----------KDLAELRGKG 191 (421)
Q Consensus 123 ~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~-f~DGRDt~P~S~~~yl~~l~----------~~l~~~~~~g 191 (421)
..-++-|| -||+-+|..+++.+++.| +.||||+ +.+|-- .-.-|..|+.+.- ..++...+.|
T Consensus 23 ~~~~vflL-----~~~i~~ik~ivk~lK~~g-K~vfiHvDLv~Gl~-~~e~~i~fi~~~~~pdGIISTk~~~i~~Akk~~ 95 (181)
T COG1954 23 ESQYVFLL-----TGHILNIKEIVKKLKNRG-KTVFIHVDLVEGLS-NDEVAIEFIKEVIKPDGIISTKSNVIKKAKKLG 95 (181)
T ss_pred CCeEEEEE-----echhhhHHHHHHHHHhCC-cEEEEEeHHhcccC-CchHHHHHHHHhccCCeeEEccHHHHHHHHHcC
Confidence 34555554 369999999999999998 5899998 556655 4556677776543 1111111112
Q ss_pred CCceEEEEeecccccccCCCCChHHHHHHHHHHHh
Q 014659 192 VDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVL 226 (421)
Q Consensus 192 ~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~ 226 (421)
. . ..=|+| ..|+ --.+++++.+-.
T Consensus 96 ~---~--aIqR~F-ilDS-----~Al~~~~~~i~~ 119 (181)
T COG1954 96 I---L--AIQRLF-ILDS-----IALEKGIKQIEK 119 (181)
T ss_pred C---c--eeeeee-eecH-----HHHHHHHHHHHH
Confidence 2 1 357999 9999 777788776653
No 64
>PRK01060 endonuclease IV; Provisional
Probab=30.59 E-value=2.1e+02 Score=27.63 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEE
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHI 161 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~ 161 (421)
.++.+...+++|++.|++.|.+|.
T Consensus 87 s~~~~~~~i~~A~~lga~~vv~h~ 110 (281)
T PRK01060 87 SRDFLIQEIERCAALGAKLLVFHP 110 (281)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcC
Confidence 377899999999999999999995
No 65
>COG1944 Uncharacterized conserved protein [Function unknown]
Probab=30.53 E-value=45 Score=35.53 Aligned_cols=58 Identities=19% Similarity=0.115 Sum_probs=40.5
Q ss_pred EEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccc-----ccccCCCCChHHHHHHHHHHHhCCCC
Q 014659 159 LHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMY-----VTMDRYENDWDVVKRGWDAQVLGEAP 230 (421)
Q Consensus 159 vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyy-----vaMDR~D~rW~Rv~~ay~a~v~g~g~ 230 (421)
.+.+.++||++|.-.+.+++. .|+.+ |++ +|+=++||-- +--=| -+.|+ .++.+|+|-
T Consensus 5 ~~~~~~~r~~~p~et~~~~q~---~l~~~---git-rI~~~t~Ld~~gIPv~~a~r-p~~~~------~~~~~GKGa 67 (398)
T COG1944 5 AQTEISGRDASPEETLAAFQP---LLAAL---GIT-RIEDITWLDRLGIPVVWAVR-PRALG------LSVSQGKGA 67 (398)
T ss_pred hhcccccccCCHHHHHHHHHH---HHHhc---Cce-eeeeeeccccCCCceEEEee-ecccc------ceeecCCCC
Confidence 467889999999996666665 46677 886 8999999860 01224 44555 566778885
No 66
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=30.36 E-value=67 Score=32.27 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=31.4
Q ss_pred eEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecC
Q 014659 124 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG 165 (421)
Q Consensus 124 lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DG 165 (421)
-+++=|+|||.-|-|-.-...+++.|+++|+. + +=+++|.
T Consensus 165 ~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~-l-~~I~ld~ 204 (266)
T cd01460 165 WQLLLIISDGRGEFSEGAQKVRLREAREQNVF-V-VFIIIDN 204 (266)
T ss_pred ccEEEEEECCCcccCccHHHHHHHHHHHcCCe-E-EEEEEcC
Confidence 48999999999887877777779999999984 3 3345655
No 67
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=30.25 E-value=1.7e+02 Score=28.44 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEE
Q 014659 138 RLDQLQLLLKGASERGAKRIRLH 160 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH 160 (421)
.++++...+++|++.|++.|.++
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~ 114 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLA 114 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEec
Confidence 46789999999999999877665
No 68
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=29.56 E-value=1.1e+02 Score=34.55 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCC
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKG 191 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g 191 (421)
-.+||..|+++|+++|+. |+-||+-|-|.- .|.-+-+..|..+|.+.++.|
T Consensus 72 Ea~~L~~Li~aAke~~i~--F~YAiSPGlDit-ySspkE~~TLKrKLDQV~qfG 122 (891)
T KOG3698|consen 72 EATYLRNLIEAAKENNIN--FVYAISPGLDIT-YSSPKEMDTLKRKLDQVRQFG 122 (891)
T ss_pred HHHHHHHHHHHHHhcCce--EEEEcCCCcccc-cCCHHHHHHHHHHHHHHHhhC
Confidence 468999999999999995 788999999985 555667888888777664333
No 69
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=29.22 E-value=90 Score=27.55 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=43.8
Q ss_pred hhhhhc--CCCceEEE-EeecC-CCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHH
Q 014659 114 YIKPSF--ETGTLHLI-GLLSD-GGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEK 182 (421)
Q Consensus 114 ~~~~~~--~~~~lHl~-GLlSD-GGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~ 182 (421)
.+++.. .+|.-|++ |++|+ -|+.-..-++..|.+.+++.++++|++ |+ .-++.=..-..||.++.+
T Consensus 13 ~~iE~~~~y~G~Y~VL~G~ispl~gi~p~~l~i~~L~~ri~~~~i~EVIl-A~--~pt~EGe~Ta~yi~~~l~ 82 (112)
T cd01025 13 LAIEESGEYRGLYHVLGGLISPLDGIGPDDLNIDKLLERIAKGQVKEVIL-AT--NPTVEGEATALYIAKLLK 82 (112)
T ss_pred HHHHhhCccceEEEEeCCCcCCCCCCCccccCHHHHHHHHhcCCCcEEEE-ec--CCCchHHHHHHHHHHHHh
Confidence 345554 35777766 77776 456556668899999999999999843 33 234444455678777754
No 70
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.18 E-value=1.2e+02 Score=29.04 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEE
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHIL 162 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~f 162 (421)
.++++..++++|+..|++.|.++.+
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~ 116 (284)
T PRK13210 92 ALEIMKKAIRLAQDLGIRTIQLAGY 116 (284)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCc
Confidence 4688899999999999988877643
No 71
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=28.95 E-value=46 Score=31.41 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=21.4
Q ss_pred EEEEEEcccCCCCCC-CCCccccCCCCcHHHHHhh
Q 014659 18 VAVVVLDGWGEFKPD-KYNCIHVADTPTMDSFKKS 51 (421)
Q Consensus 18 vvLiIlDGwG~~~~~-~gNAi~~A~tP~~D~L~~~ 51 (421)
||+|++|.++...-. .++.+ ..||++|+|.++
T Consensus 3 Vv~i~~Es~~~~~~~~~~~~~--~~tP~l~~l~~~ 35 (308)
T PF00884_consen 3 VVLIVLESLRADDLSCYGYPI--PTTPNLDRLAEN 35 (308)
T ss_dssp EEEEEETT--TTSSGGGTSSS--SSSHHHHHHHHT
T ss_pred EEEEEcccCCCCCCCCCCCCc--ccCHHHHHhhhc
Confidence 899999999875322 23333 349999999876
No 72
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=28.75 E-value=1.1e+02 Score=29.52 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHHcCCCeEEEEE
Q 014659 137 SRLDQLQLLLKGASERGAKRIRLHI 161 (421)
Q Consensus 137 Sh~~Hl~al~~~a~~~gv~~v~vH~ 161 (421)
..++++...+++|++.|++.|.+|.
T Consensus 81 ~~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 81 KSIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 4578999999999999999999987
No 73
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=28.33 E-value=59 Score=35.86 Aligned_cols=42 Identities=33% Similarity=0.576 Sum_probs=35.2
Q ss_pred ceEEEE--eecCCCccc---------------------cHHHHHHHHHHHHHcCCCeEEEEEEecC
Q 014659 123 TLHLIG--LLSDGGVHS---------------------RLDQLQLLLKGASERGAKRIRLHILTDG 165 (421)
Q Consensus 123 ~lHl~G--LlSDGGVHS---------------------h~~Hl~al~~~a~~~gv~~v~vH~f~DG 165 (421)
.+.+.| ++.||+..+ ..+.|..+++.|.++|+ +|.||+|.|+
T Consensus 281 ~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G~~l~~~e~l~~~v~~a~~~gl-~v~vHAiGD~ 345 (535)
T COG1574 281 LLQGGGVKLFADGSLGERTALLAAPYADGPGPSGELLLTEEELEELVRAADERGL-PVAVHAIGDG 345 (535)
T ss_pred eeecCceEEEEeCCCCcchhhccCcccCCCCCCCCcccCHHHHHHHHHHHHHCCC-cEEEEEechH
Confidence 677777 777777654 46789999999999999 6999999997
No 74
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=27.97 E-value=1.8e+02 Score=29.60 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=44.9
Q ss_pred hhhhhc-CCC-ceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecC-----CCCCCCchHHHHHHHHH
Q 014659 114 YIKPSF-ETG-TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDG-----RDVLDGSSVGFVETIEK 182 (421)
Q Consensus 114 ~~~~~~-~~~-~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DG-----RDt~P~S~~~yl~~l~~ 182 (421)
++++.+ +.| .+-..-.|..| |--..+.+..|++.+.+.|+...|+|.+..- -++++..+...++++..
T Consensus 218 ~ai~~L~~~Gi~v~~q~vLl~g-vNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~ 292 (321)
T TIGR03822 218 AACARLIDAGIPMVSQSVLLRG-VNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRG 292 (321)
T ss_pred HHHHHHHHcCCEEEEEeeEeCC-CCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHH
Confidence 344444 345 56565556555 7778889999999999999999999988432 13444555555555543
No 75
>PRK12383 putative mutase; Provisional
Probab=27.26 E-value=1.5e+02 Score=31.66 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=40.6
Q ss_pred cCHHHHHHhCCCcEEEEecccccceEEEeecCCccccCCCCCceEEEccCCCccCccCCCCCcHHHHHHHHHHHHHcCCC
Q 014659 336 RTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRF 415 (421)
Q Consensus 336 ntLgevls~~Gl~QlriAETEKyaHVTfFfNGG~e~~f~~~gE~R~lvpSpkVaTYDl~PeMsA~evtd~~i~ai~~~~y 415 (421)
.++-..++++|++-..|+ |.+ +.|++ +..+.| -|.++..+.+++++++++++++
T Consensus 234 ~~v~~~l~~~G~~v~~VG---Ki~---Di~s~------------------~G~t~~--~~~~~t~~~~~~~l~aL~~~~~ 287 (406)
T PRK12383 234 VQVPQKLYEAGVPVVLVG---KVA---DIVNN------------------PYGVSW--QNLVDTQRVMDITLDEFNTHPT 287 (406)
T ss_pred chhhhHHHHcCCCEEEEE---EhH---Heecc------------------CCcccc--cccCCHHHHHHHHHHHHhcCCC
Confidence 556678999999999883 222 33331 111111 1456777999999999999889
Q ss_pred cEEEe
Q 014659 416 HQVID 420 (421)
Q Consensus 416 dfIi~ 420 (421)
|||.+
T Consensus 288 dlvfv 292 (406)
T PRK12383 288 AFICT 292 (406)
T ss_pred CEEEE
Confidence 99986
No 76
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=26.88 E-value=60 Score=34.37 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=25.0
Q ss_pred cEEEEEEcccCCCCCCCCCccccCCCCcHHHHHhh
Q 014659 17 IVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKS 51 (421)
Q Consensus 17 pvvLiIlDGwG~~~~~~gNAi~~A~tP~~D~L~~~ 51 (421)
+++|||||++|++.....+.+-....-++-++.+.
T Consensus 1 R~~~iVlDs~GiG~~pDa~~~~D~ganTl~hi~~~ 35 (381)
T TIGR01696 1 RVFLIVMDSVGIGEAPDAADFGDEGAHTLGHIAEA 35 (381)
T ss_pred CEEEEEecCCcCCCCCCHHHhCCCCccHHHHHHHh
Confidence 38999999999997776665555555555555554
No 77
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=26.87 E-value=4.2e+02 Score=24.55 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=45.1
Q ss_pred CCCccchhHhhhhhhcCCCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCC-C-CCCchHHHH---H
Q 014659 104 GKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD-V-LDGSSVGFV---E 178 (421)
Q Consensus 104 g~~~~n~~l~~~~~~~~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRD-t-~P~S~~~yl---~ 178 (421)
+++.+.+.|.++++.+ |.+-++...=.+...+....|+++|++.||+.++.--|.-.-+ + .+.....++ .
T Consensus 50 ~d~~~~~~l~~al~g~-----d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~ 124 (233)
T PF05368_consen 50 ADYDDPESLVAALKGV-----DAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKA 124 (233)
T ss_dssp S-TT-HHHHHHHHTTC-----SEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHH
T ss_pred cccCCHHHHHHHHcCC-----ceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhh
Confidence 5565666665555443 3344444433377899999999999999998775444432221 1 112233333 4
Q ss_pred HHHHHHHHH
Q 014659 179 TIEKDLAEL 187 (421)
Q Consensus 179 ~l~~~l~~~ 187 (421)
++++.|++.
T Consensus 125 ~ie~~l~~~ 133 (233)
T PF05368_consen 125 EIEEYLRES 133 (233)
T ss_dssp HHHHHHHHC
T ss_pred hhhhhhhhc
Confidence 677777775
No 78
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.79 E-value=1.7e+02 Score=24.67 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=53.3
Q ss_pred eEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEec--------CCC---CCCCchHHHHHHHHHHHHHHhcCCC
Q 014659 124 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTD--------GRD---VLDGSSVGFVETIEKDLAELRGKGV 192 (421)
Q Consensus 124 lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~D--------GRD---t~P~S~~~yl~~l~~~l~~~~~~g~ 192 (421)
.+++ |+-.+|+=|++ =+..+-+.|+++|++ +-|.+..= .-| +.|+-+- .++++++.++.. |+
T Consensus 4 ~~IL-l~C~~G~sSS~-l~~k~~~~~~~~gi~-~~v~a~~~~~~~~~~~~~Dvill~pqi~~-~~~~i~~~~~~~---~i 76 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSL-LVNKMNKAAEEYGVP-VKIAAGSYGAAGEKLDDADVVLLAPQVAY-MLPDLKKETDKK---GI 76 (95)
T ss_pred cEEE-EECCCchhHHH-HHHHHHHHHHHCCCc-EEEEEecHHHHHhhcCCCCEEEECchHHH-HHHHHHHHhhhc---CC
Confidence 3555 45556677887 558889999999995 55666542 223 2455443 677787776665 65
Q ss_pred CceEEEEeecccccccC
Q 014659 193 DAQIASGGGRMYVTMDR 209 (421)
Q Consensus 193 g~~IASv~GRyyvaMDR 209 (421)
+|+++-.+-|..||-
T Consensus 77 --pv~~I~~~~Y~~mdg 91 (95)
T TIGR00853 77 --PVEVINGAQYGKLTG 91 (95)
T ss_pred --CEEEeChhhcccCCc
Confidence 899999999977875
No 79
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=26.60 E-value=4.2e+02 Score=25.12 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=37.7
Q ss_pred ceEEEEeecCCCccc----------cHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHH
Q 014659 123 TLHLIGLLSDGGVHS----------RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL 187 (421)
Q Consensus 123 ~lHl~GLlSDGGVHS----------h~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~ 187 (421)
.+|+..-.|| .|. +++.....++.|++.|+ +|.+.+..=.| |..-..|+.++-+.+.+.
T Consensus 90 ~i~i~~~~s~--~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 158 (265)
T cd03174 90 EVRIFDSASE--THSRKNLNKSREEDLENAEEAIEAAKEAGL-EVEGSLEDAFG---CKTDPEYVLEVAKALEEA 158 (265)
T ss_pred EEEEEEecCH--HHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeecC---CCCCHHHHHHHHHHHHHc
Confidence 7888888887 444 34777888888999997 46666643222 123345666666555655
No 80
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=26.59 E-value=1.5e+02 Score=22.64 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=29.1
Q ss_pred ceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeE
Q 014659 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRI 157 (421)
Q Consensus 123 ~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v 157 (421)
.++.+++-..+|.- .-+.|.+|.++|++.|...+
T Consensus 8 g~~~v~~~~~~G~i-~~~~l~~la~ia~~yg~~~i 41 (69)
T PF03460_consen 8 GFYMVRIRIPGGRI-SAEQLRALAEIAEKYGDGEI 41 (69)
T ss_dssp TEEEEEEB-GGGEE-EHHHHHHHHHHHHHHSTSEE
T ss_pred eEEEEEEeCCCEEE-CHHHHHHHHHHHHHhCCCeE
Confidence 68999999999999 77899999999999997533
No 81
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=26.49 E-value=4.5e+02 Score=29.58 Aligned_cols=98 Identities=18% Similarity=0.329 Sum_probs=52.7
Q ss_pred CCCccchhHhhhhhhc-C----CCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHH
Q 014659 104 GKIYQDEGFNYIKPSF-E----TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE 178 (421)
Q Consensus 104 g~~~~n~~l~~~~~~~-~----~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~ 178 (421)
|.-.-..+|..+.+.+ . .+...++=|+|||--++. +-....++.+++.|++ |++=.+.+|-| ...++
T Consensus 125 GgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~-~dvleaAq~LR~~GVe-I~vIGVG~g~n------~e~Lr 196 (576)
T PTZ00441 125 GKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSK-YRALEESRKLKDRNVK-LAVIGIGQGIN------HQFNR 196 (576)
T ss_pred CCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCc-ccHHHHHHHHHHCCCE-EEEEEeCCCcC------HHHHH
Confidence 3333344555544444 2 135688999999986554 3344456788889995 44433444333 12222
Q ss_pred HHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHHHHHHHHH
Q 014659 179 TIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQV 225 (421)
Q Consensus 179 ~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v 225 (421)
.| + |+ ....-.|||| - ..+|+-++..-+.|.
T Consensus 197 lI----A-----gC--~p~~g~c~~Y----~-vadf~eL~~ivk~Li 227 (576)
T PTZ00441 197 LL----A-----GC--RPREGKCKFY----S-DADWEEAKNLIKPFI 227 (576)
T ss_pred HH----h-----cc--CCCCCCCceE----E-eCCHHHHHHHHHHHH
Confidence 22 1 22 2222357998 2 456876666555544
No 82
>PRK05362 phosphopentomutase; Provisional
Probab=26.49 E-value=63 Score=34.27 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=16.6
Q ss_pred CcEEEEEEcccCCCCCCCCCcc
Q 014659 16 NIVAVVVLDGWGEFKPDKYNCI 37 (421)
Q Consensus 16 ~pvvLiIlDGwG~~~~~~gNAi 37 (421)
++++|||||++|++.-...+.+
T Consensus 2 ~r~~~ivlDs~GiG~~~Da~~~ 23 (394)
T PRK05362 2 KRVFLIVLDSVGIGAAPDAAKF 23 (394)
T ss_pred CeEEEEEecCCcCCCCCCHHHh
Confidence 3699999999999966554333
No 83
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=25.94 E-value=2e+02 Score=30.39 Aligned_cols=74 Identities=23% Similarity=0.308 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCC----CchHH-HHHHHHHHHHHHhcCCCCceEEEE----eeccccccc
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLD----GSSVG-FVETIEKDLAELRGKGVDAQIASG----GGRMYVTMD 208 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P----~S~~~-yl~~l~~~l~~~~~~g~g~~IASv----~GRyyvaMD 208 (421)
-|+|++..+++|++.|.+.| .-.+-||.+-++ ..+.+ +++.|.+.+ .....++ +++-= --|+| ..|
T Consensus 114 AIe~~k~~idiA~eLGa~~I-~iW~~DG~~~~g~~~~~~a~~rl~esL~eI~-~~~~~~v--~~~iE~Kp~Ep~~y-~t~ 188 (378)
T TIGR02635 114 AIDHLLECVDIAKKTGSKDI-SLWLADGTNYPGQDDFRSRKDRLEESLAEVY-EHLGADM--RLLIEYKFFEPAFY-HTD 188 (378)
T ss_pred HHHHHHHHHHHHHHhCCCeE-EEecCCcCcCCcccCHHHHHHHHHHHHHHHH-HhCcCCC--EEEEecCCCCCcee-eec
Confidence 37999999999999999743 333459999988 33322 333333333 3222233 67641 24898 666
Q ss_pred CCCCChHHHH
Q 014659 209 RYENDWDVVK 218 (421)
Q Consensus 209 R~D~rW~Rv~ 218 (421)
-..|...-
T Consensus 189 --~~~~~~~l 196 (378)
T TIGR02635 189 --IPDWGTAY 196 (378)
T ss_pred --CCcHHHHH
Confidence 25566543
No 84
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.72 E-value=3.7e+02 Score=25.98 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=58.4
Q ss_pred cCCCccchhHhhhhhhc-CCC--ceEEEEeecCCCcccc-------HHHHHHHHHHHHHcCCCeEEEEEEecC--CCC--
Q 014659 103 SGKIYQDEGFNYIKPSF-ETG--TLHLIGLLSDGGVHSR-------LDQLQLLLKGASERGAKRIRLHILTDG--RDV-- 168 (421)
Q Consensus 103 ~g~~~~n~~l~~~~~~~-~~~--~lHl~GLlSDGGVHSh-------~~Hl~al~~~a~~~gv~~v~vH~f~DG--RDt-- 168 (421)
+..|.++..|.+.++.+ +.| .+-|- +++ -|++ ...+.++.+.+++.|++=+-+.....+ .-.
T Consensus 9 ~~~~~~~~~~~e~l~~~~~~G~~~VEl~--~~~--~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~ 84 (279)
T TIGR00542 9 EKALPKGECWLERLQLAKTCGFDFVEMS--VDE--TDDRLSRLDWSREQRLALVNAIIETGVRIPSMCLSAHRRFPLGSK 84 (279)
T ss_pred hhhCCCCCCHHHHHHHHHHcCCCEEEEe--cCC--ccchhhccCCCHHHHHHHHHHHHHcCCCceeeecCCCccCcCCCc
Confidence 44556677788888777 434 66662 222 2332 455778888999999963334321111 011
Q ss_pred CCCc---hHHHHHHHHHHHHHHhcCCCCceEEEEeec-ccccccCCCCChHHHHHHHHHHH
Q 014659 169 LDGS---SVGFVETIEKDLAELRGKGVDAQIASGGGR-MYVTMDRYENDWDVVKRGWDAQV 225 (421)
Q Consensus 169 ~P~S---~~~yl~~l~~~l~~~~~~g~g~~IASv~GR-yyvaMDR~D~rW~Rv~~ay~a~v 225 (421)
.|.. ++.++++.-+.++.+ |+ +...+.|+ ++-..+. +..|+++...++.++
T Consensus 85 ~~~~r~~~~~~~~~~i~~a~~l---G~--~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~l~ 139 (279)
T TIGR00542 85 DKAVRQQGLEIMEKAIQLARDL---GI--RTIQLAGYDVYYEEHD-EETRRRFREGLKEAV 139 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh---CC--CEEEecCcccccCcCC-HHHHHHHHHHHHHHH
Confidence 1222 344555555555555 76 34455554 2202233 455666665555444
No 85
>PRK12677 xylose isomerase; Provisional
Probab=25.27 E-value=1.7e+02 Score=30.76 Aligned_cols=108 Identities=15% Similarity=-0.012 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCC-Cc---h-HHHHHHHHHHHHHHhcCCCCceEEEEeecccccc-cCCC
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLD-GS---S-VGFVETIEKDLAELRGKGVDAQIASGGGRMYVTM-DRYE 211 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P-~S---~-~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaM-DR~D 211 (421)
.++|+...|++|++.|++.|.||.=-||-+.+. .+ + ..+++.|...+....+.|.|.+|+==-=.++ .+ +-+-
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~e-p~~~~~l 190 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNE-PRGDILL 190 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCC-CCCCeee
Confidence 489999999999999999887775334443221 12 2 2233334333333322243325553221221 11 1124
Q ss_pred CChHHHHHHHHHHHhCC--CC-----C---cccCHHHHHHHHHhC
Q 014659 212 NDWDVVKRGWDAQVLGE--AP-----H---KFKSAVEAVKKLREQ 246 (421)
Q Consensus 212 ~rW~Rv~~ay~a~v~g~--g~-----~---~~~~~~~ai~~~Y~~ 246 (421)
..|+.+....+.+-... |- + .-.++.++|......
T Consensus 191 ~t~~~al~li~~lg~~~~vGv~lD~gH~~m~g~n~~~~i~~~l~~ 235 (384)
T PRK12677 191 PTVGHALAFIATLEHPEMVGLNPEVGHEQMAGLNFTHGIAQALWA 235 (384)
T ss_pred CCHHHHHHHHHHhCCCccEEEeeechHHHhcCCCHHHHHHHHHhC
Confidence 56666666555442111 10 0 014677777776643
No 86
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=25.17 E-value=4.6e+02 Score=28.67 Aligned_cols=145 Identities=18% Similarity=0.192 Sum_probs=69.6
Q ss_pred hCCCCceEEeeccCccCCCCCCCCCCcccccccCCccceeccchHHHHHHHhcCCCccchhHhhhhhhcCCCceEEEEee
Q 014659 51 SAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLL 130 (421)
Q Consensus 51 ~yP~~~t~L~AsG~~VGLP~~GqMGNSEVGHlniGAGRvv~Q~l~rI~~aI~~g~~~~n~~l~~~~~~~~~~~lHl~GLl 130 (421)
+-|. +.+.++-...||| ++ +.++|+ .+.+.+|+...- ..|.++++++.+.+|=|+..
T Consensus 266 ~~~~--~~v~~~R~~~gLp-~d--------~vvF~~----fn~~~KI~p~~l-------~~W~~IL~~vP~S~L~L~~~- 322 (468)
T PF13844_consen 266 EVPQ--NIVVTTRAQYGLP-ED--------AVVFGS----FNNLFKISPETL-------DLWARILKAVPNSRLWLLRF- 322 (468)
T ss_dssp S--S--SEEEEETGGGT---SS--------SEEEEE-----S-GGG--HHHH-------HHHHHHHHHSTTEEEEEEET-
T ss_pred cCCc--cccccCHHHcCCC-CC--------ceEEEe----cCccccCCHHHH-------HHHHHHHHhCCCcEEEEeeC-
Confidence 4577 8999999999999 32 455554 466777777653 34667777662335544431
Q ss_pred cCCCccccHHHHHHHHHHHHHcCCC--eEEEEEEecC-----C--------CCCCCch-HHHHHHHHHHHHHHhcCCCCc
Q 014659 131 SDGGVHSRLDQLQLLLKGASERGAK--RIRLHILTDG-----R--------DVLDGSS-VGFVETIEKDLAELRGKGVDA 194 (421)
Q Consensus 131 SDGGVHSh~~Hl~al~~~a~~~gv~--~v~vH~f~DG-----R--------Dt~P~S~-~~yl~~l~~~l~~~~~~g~g~ 194 (421)
+ .+-.++ |.+.++++|+. ++.+.-.+.- | ||.|.+| ..-++.|- . |+
T Consensus 323 ---~-~~~~~~---l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALw-----m---GV-- 385 (468)
T PF13844_consen 323 ---P-ASGEAR---LRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALW-----M---GV-- 385 (468)
T ss_dssp ---S-TTHHHH---HHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHH-----H---T---
T ss_pred ---C-HHHHHH---HHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHH-----c---CC--
Confidence 1 122344 44567788985 3432211110 0 6677765 33333331 2 66
Q ss_pred eEEEEeecccccccCCCCChHHHHHHHHHHHhCCCCCcccCHHHHHHHHHh
Q 014659 195 QIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLRE 245 (421)
Q Consensus 195 ~IASv~GRyyvaMDR~D~rW~Rv~~ay~a~v~g~g~~~~~~~~~ai~~~Y~ 245 (421)
.+.|..|+.+ | .|+-.+.-.- .|-.+-.+.|..+||+.+-+
T Consensus 386 PvVTl~G~~~----~-----sR~~aSiL~~-lGl~ElIA~s~~eYv~~Av~ 426 (468)
T PF13844_consen 386 PVVTLPGETM----A-----SRVGASILRA-LGLPELIADSEEEYVEIAVR 426 (468)
T ss_dssp -EEB---SSG----G-----GSHHHHHHHH-HT-GGGB-SSHHHHHHHHHH
T ss_pred CEEeccCCCc----h-----hHHHHHHHHH-cCCchhcCCCHHHHHHHHHH
Confidence 8999999998 5 4444443222 25444467888888887764
No 87
>PRK09989 hypothetical protein; Provisional
Probab=25.09 E-value=4e+02 Score=25.53 Aligned_cols=86 Identities=10% Similarity=0.064 Sum_probs=44.0
Q ss_pred CccchhHhhhhhhc-CCC--ceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEE----EecCCC---CCC---Cc
Q 014659 106 IYQDEGFNYIKPSF-ETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHI----LTDGRD---VLD---GS 172 (421)
Q Consensus 106 ~~~n~~l~~~~~~~-~~~--~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~----f~DGRD---t~P---~S 172 (421)
+|....|.+.++.+ +.| .+-|.+ ..+ |. ...+.+++++.|++-+.+|. +..|+. ..| ..
T Consensus 11 ~~~~~~l~~~l~~~~~~Gfd~VEl~~---~~~-~~----~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK09989 11 MFTEVPFIERFAAARKAGFDAVEFLF---PYD-YS----TLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHE 82 (258)
T ss_pred hhcCCCHHHHHHHHHHcCCCEEEECC---ccc-CC----HHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHH
Confidence 34444456666666 334 455543 222 32 45667778899996554553 122322 122 23
Q ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEEeecc
Q 014659 173 SVGFVETIEKDLAELRGKGVDAQIASGGGRM 203 (421)
Q Consensus 173 ~~~yl~~l~~~l~~~~~~g~g~~IASv~GRy 203 (421)
+..++++..+..+++ |+. .|-..+|+.
T Consensus 83 ~~~~l~~~i~~A~~l---g~~-~v~v~~g~~ 109 (258)
T PRK09989 83 ARADIDLALEYALAL---NCE-QVHVMAGVV 109 (258)
T ss_pred HHHHHHHHHHHHHHh---CcC-EEEECccCC
Confidence 345555555555555 763 454446654
No 88
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=24.52 E-value=3.2e+02 Score=23.63 Aligned_cols=62 Identities=26% Similarity=0.309 Sum_probs=34.1
Q ss_pred hHhhhhhhc-C-CCceEEEEeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHH
Q 014659 111 GFNYIKPSF-E-TGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 180 (421)
Q Consensus 111 ~l~~~~~~~-~-~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l 180 (421)
.+..+.+.+ . .+....+=|+|||..+.. ..+...++.+.+.+ +.||++.=|.+.. ..+|++|
T Consensus 85 al~~a~~~l~~~~~~~~~iillTDG~~~~~-~~~~~~~~~~~~~~---i~i~~i~~g~~~~----~~~l~~i 148 (171)
T cd01461 85 ALEAALELLNSSPGSVPQIILLTDGEVTNE-SQILKNVREALSGR---IRLFTFGIGSDVN----TYLLERL 148 (171)
T ss_pred HHHHHHHhhccCCCCccEEEEEeCCCCCCH-HHHHHHHHHhcCCC---ceEEEEEeCCccC----HHHHHHH
Confidence 334444444 2 246788999999986543 33444444444444 4566665554332 3455555
No 89
>PRK12677 xylose isomerase; Provisional
Probab=23.79 E-value=3.5e+02 Score=28.45 Aligned_cols=80 Identities=21% Similarity=0.180 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCCeEEE------E-EEecCCCCCCCc-----hHHHHHHHHHHHHHHhcCCCCceEEEEeecc----c
Q 014659 141 QLQLLLKGASERGAKRIRL------H-ILTDGRDVLDGS-----SVGFVETIEKDLAELRGKGVDAQIASGGGRM----Y 204 (421)
Q Consensus 141 Hl~al~~~a~~~gv~~v~v------H-~f~DGRDt~P~S-----~~~yl~~l~~~l~~~~~~g~g~~IASv~GRy----y 204 (421)
.+..+.+++++.|++=..+ | .|.||-=+.|.. ++.++++-.+..+++ |+. .|-..+||- .
T Consensus 68 ~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eL---Ga~-~Vvv~~G~~g~~~~ 143 (384)
T PRK12677 68 IIKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAEL---GAK-TYVMWGGREGAEYD 143 (384)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHh---CCC-EEEEeeCCCCccCc
Confidence 4778888889999963323 3 367776666644 344455555555555 764 565568873 2
Q ss_pred ccccCCCCChHHHHHHHHHHH
Q 014659 205 VTMDRYENDWDVVKRGWDAQV 225 (421)
Q Consensus 205 vaMDR~D~rW~Rv~~ay~a~v 225 (421)
...|+ .+.|+|...+.+.++
T Consensus 144 ~~~d~-~~a~~~~~eaL~~l~ 163 (384)
T PRK12677 144 AAKDV-RAALDRYREAIDLLA 163 (384)
T ss_pred ccCCH-HHHHHHHHHHHHHHH
Confidence 14455 566666665555443
No 90
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.55 E-value=1.7e+02 Score=27.81 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEEEec-CCCCCCCchHHHHHHHHHHHHHHhcCCCCceEE
Q 014659 139 LDQLQLLLKGASERGAKRIRLHILTD-GRDVLDGSSVGFVETIEKDLAELRGKGVDAQIA 197 (421)
Q Consensus 139 ~~Hl~al~~~a~~~gv~~v~vH~f~D-GRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IA 197 (421)
.+++...++.|++.|++.|.++.-.+ +....+..-..+++.|.+.+....+.|+ +|+
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi--~l~ 140 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGL--TLL 140 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC--EEE
No 91
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=23.28 E-value=69 Score=27.15 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=33.4
Q ss_pred ecCCCc---cccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHH
Q 014659 130 LSDGGV---HSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVET 179 (421)
Q Consensus 130 lSDGGV---HSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~ 179 (421)
+.|... -.+++.+..+++.+.+.| .+|+|||-. |+.-+|.-+..||-.
T Consensus 47 ~~D~~~~~~~~~~~~~~~~i~~~~~~~-~~VlVHC~~-G~~RS~~v~~ayLm~ 97 (133)
T PF00782_consen 47 IDDDPEEPILEHLDQAVEFIENAISEG-GKVLVHCKA-GLSRSGAVAAAYLMK 97 (133)
T ss_dssp EESSTTSHGGGGHHHHHHHHHHHHHTT-SEEEEEESS-SSSHHHHHHHHHHHH
T ss_pred ecCCCCcchHHHHHHHHHhhhhhhccc-ceeEEEeCC-CcccchHHHHHHHHH
Confidence 555332 456667777777777777 479999975 888777777777643
No 92
>COG2028 Uncharacterized conserved protein [Function unknown]
Probab=23.05 E-value=1e+02 Score=28.06 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=37.0
Q ss_pred cccCHHHHHHHHHhCCCCCCCCCCCEEEecCCCCccccccCCCEEEEeecCcch
Q 014659 232 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADR 285 (421)
Q Consensus 232 ~~~~~~~ai~~~Y~~~~~tDEFi~P~vi~~~~~~~~~~I~dgD~Vif~NFR~DR 285 (421)
+|+-|.+.++.-+..| .|-|++|+.+ .+++|=-|||+-.|-|.
T Consensus 8 tfpvp~efldrifkeg--k~vfvkpatl---------~vepgMKviFYaSredq 50 (145)
T COG2028 8 TFPVPKEFLDRIFKEG--KDVFVKPATL---------WVEPGMKVIFYASREDQ 50 (145)
T ss_pred ecCCcHHHHHHHHhcC--CceEeecceE---------EecCCcEEEEEEecccC
Confidence 5777889999999885 6999999987 37889999999999875
No 93
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.83 E-value=1.9e+02 Score=27.67 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEE
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHI 161 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~ 161 (421)
..+++..+++.|++.|++.|.++.
T Consensus 83 ~~~~~~~~i~~a~~lga~~i~~~~ 106 (258)
T PRK09997 83 FRDGVAAAIRYARALGNKKINCLV 106 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECC
Confidence 368899999999999998776654
No 94
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=22.81 E-value=2e+02 Score=26.21 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=7.6
Q ss_pred EEEEEcccCCC
Q 014659 19 AVVVLDGWGEF 29 (421)
Q Consensus 19 vLiIlDGwG~~ 29 (421)
|+++||+=|--
T Consensus 5 vv~vlD~S~Sm 15 (186)
T cd01480 5 ITFVLDSSESV 15 (186)
T ss_pred EEEEEeCCCcc
Confidence 56789986643
No 95
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=22.81 E-value=3.9e+02 Score=26.05 Aligned_cols=69 Identities=25% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHHH
Q 014659 139 LDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVK 218 (421)
Q Consensus 139 ~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv~ 218 (421)
.+.+...++.+++.|++ .+|+++.|.+..+....+|++.+.+.+++. ++ ++ +...- .+|+ |..+
T Consensus 64 ~eei~~~~~~~~~~g~~--~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~---~i--~~---~~~~g-~~~~-----e~l~ 127 (296)
T TIGR00433 64 VDEVLEEARKAKAAGAT--RFCLVASGRGPKDREFMEYVEAMVQIVEEM---GL--KT---CATLG-LLDP-----EQAK 127 (296)
T ss_pred HHHHHHHHHHHHHCCCC--EEEEEEecCCCChHHHHHHHHHHHHHHHhC---CC--eE---EecCC-CCCH-----HHHH
Q ss_pred HHHHH
Q 014659 219 RGWDA 223 (421)
Q Consensus 219 ~ay~a 223 (421)
+-.++
T Consensus 128 ~Lk~a 132 (296)
T TIGR00433 128 RLKDA 132 (296)
T ss_pred HHHHc
No 96
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=22.36 E-value=2.3e+02 Score=25.61 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=23.6
Q ss_pred ceEEEEeecCCCccccH---HHH-HHHHHHHHHcCCC
Q 014659 123 TLHLIGLLSDGGVHSRL---DQL-QLLLKGASERGAK 155 (421)
Q Consensus 123 ~lHl~GLlSDGGVHSh~---~Hl-~al~~~a~~~gv~ 155 (421)
...++=|+|||--.... ... .++++.+++.|+.
T Consensus 98 ~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~ 134 (178)
T cd01451 98 QRPLIVVITDGRANVGPDPTADRALAAARKLRARGIS 134 (178)
T ss_pred CceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCc
Confidence 45788899999776433 234 6778888888874
No 97
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=22.34 E-value=1.8e+02 Score=27.04 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=32.0
Q ss_pred chhHhhhhhhc-C-CC----ceEEEEeecCCCccccH-HHHHHHHHHHHHcCCCeEEEEEEecC
Q 014659 109 DEGFNYIKPSF-E-TG----TLHLIGLLSDGGVHSRL-DQLQLLLKGASERGAKRIRLHILTDG 165 (421)
Q Consensus 109 n~~l~~~~~~~-~-~~----~lHl~GLlSDGGVHSh~-~Hl~al~~~a~~~gv~~v~vH~f~DG 165 (421)
..+|..+.+.+ . .+ .-.++=|++||--|+.- ..+...++.++++||+ |.++.=|
T Consensus 88 ~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~---i~~vGiG 148 (192)
T cd01473 88 VEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVK---LLVVGVG 148 (192)
T ss_pred HHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCE---EEEEEec
Confidence 34555555555 2 12 25677788888877653 3455667777888873 4444445
No 98
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.31 E-value=3.1e+02 Score=27.20 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCc--------hHHHHHHHHHHHHHHhcCCCCceEEEEeecc
Q 014659 139 LDQLQLLLKGASERGAKRIRLHILTDGRDVLDGS--------SVGFVETIEKDLAELRGKGVDAQIASGGGRM 203 (421)
Q Consensus 139 ~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S--------~~~yl~~l~~~l~~~~~~g~g~~IASv~GRy 203 (421)
.+-+..++++|.+.||+.|.|=+|+=.-=-.|+. ...++++..+.+.+. |+ +| .++|+-
T Consensus 44 ~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~~~~~~~~~---~i--ri-~~iG~~ 110 (243)
T PRK14829 44 EPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEW---GV--RV-RWSGRR 110 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHHHHHHHHHc---Cc--EE-EEEech
Confidence 3567788999999999999999996555556766 444444433333333 55 55 355554
No 99
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.28 E-value=65 Score=30.93 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=58.7
Q ss_pred ccccccCCccceeccchHHHHHHHhcC-CCccchhHhh-hhhhc-CCCceEEEEeecCCCccccHHHHHHHHHHHHHcCC
Q 014659 78 EVGHNALGAGRIFAQGAKLVDLALASG-KIYQDEGFNY-IKPSF-ETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGA 154 (421)
Q Consensus 78 EVGHlniGAGRvv~Q~l~rI~~aI~~g-~~~~n~~l~~-~~~~~-~~~~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv 154 (421)
+..++.+|||-|.- .....++++.| +|.=.|.+.. +++.+ +.+-+.+=|.++..- +..|.+.|+
T Consensus 56 ~~p~~~vGAGTV~~--~e~a~~a~~aGA~FivSP~~~~~v~~~~~~~~i~~iPG~~TptE-----------i~~A~~~G~ 122 (196)
T PF01081_consen 56 EFPDLLVGAGTVLT--AEQAEAAIAAGAQFIVSPGFDPEVIEYAREYGIPYIPGVMTPTE-----------IMQALEAGA 122 (196)
T ss_dssp HHTTSEEEEES--S--HHHHHHHHHHT-SEEEESS--HHHHHHHHHHTSEEEEEESSHHH-----------HHHHHHTT-
T ss_pred HCCCCeeEEEeccC--HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcccCCcCCHHH-----------HHHHHHCCC
Confidence 34468999999975 66889999988 5656777755 55555 457899999998754 336778898
Q ss_pred CeEEEEEEecCCCCCCCchHHHHHHHHHHHH
Q 014659 155 KRIRLHILTDGRDVLDGSSVGFVETIEKDLA 185 (421)
Q Consensus 155 ~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~ 185 (421)
+ .|-+| ....-.|.+|++.|..-+.
T Consensus 123 ~--~vK~F----PA~~~GG~~~ik~l~~p~p 147 (196)
T PF01081_consen 123 D--IVKLF----PAGALGGPSYIKALRGPFP 147 (196)
T ss_dssp S--EEEET----TTTTTTHHHHHHHHHTTTT
T ss_pred C--EEEEe----cchhcCcHHHHHHHhccCC
Confidence 6 35556 2233345889998876444
No 100
>PRK14085 imidazolonepropionase; Provisional
Probab=22.08 E-value=5.6e+02 Score=26.13 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=26.0
Q ss_pred EeecCCCccccHHHHHHHHHHHHHcCCCeEEEEEEec
Q 014659 128 GLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTD 164 (421)
Q Consensus 128 GLlSDGGVHSh~~Hl~al~~~a~~~gv~~v~vH~f~D 164 (421)
.+..+|| +...+-+.++++.|++.|+ ++.+|+-.+
T Consensus 196 di~~~~~-~~~~~~l~~~~~~a~~~g~-~v~~H~~~~ 230 (382)
T PRK14085 196 DVFCERG-AFDEDQSRRVLTAGRAAGL-GLRVHGNQL 230 (382)
T ss_pred EEEecCC-CCCHHHHHHHHHHHHHcCC-CeEEEeCcc
Confidence 3334444 3457899999999999998 688998643
No 101
>PRK06886 hypothetical protein; Validated
Probab=21.95 E-value=8.8e+02 Score=24.94 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccCCCCChHHH
Q 014659 138 RLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVV 217 (421)
Q Consensus 138 h~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR~D~rW~Rv 217 (421)
-.+|+..++++|++.|+ .|-+|+ |-.+.+.. ..++.+.+...+. |..++ .+++=-. +|+- ...+..
T Consensus 160 ~~e~l~~~~~lA~~~g~-~Id~Hl--de~~~~~~---~~le~l~~~~~~~---Gl~gr--V~~sH~~-~L~~--~~~~~~ 225 (329)
T PRK06886 160 GLEAMDILLDTAKSLGK-MVHVHV--DQFNTPKE---KETEQLCDKTIEH---GMQGR--VVAIHGI-SIGA--HSKEYR 225 (329)
T ss_pred CHHHHHHHHHHHHHcCC-CeEEeE--CCCCchhH---HHHHHHHHHHHHc---CCCCC--EEEEEec-cccC--cChhhH
Confidence 35789999999999998 466665 44443332 3355554444444 66556 3455555 6663 344556
Q ss_pred HHHHHHHHhC
Q 014659 218 KRGWDAQVLG 227 (421)
Q Consensus 218 ~~ay~a~v~g 227 (421)
.+.++.|..-
T Consensus 226 ~~~i~~La~a 235 (329)
T PRK06886 226 YRLYQKMREA 235 (329)
T ss_pred HHHHHHHHHc
Confidence 6667766643
No 102
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.88 E-value=2.4e+02 Score=29.60 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEEEecCCCCCC--------CchHHHHHHHHHHHHHHhcCCCCceEE
Q 014659 139 LDQLQLLLKGASERGAKRIRLHILTDGRDVLD--------GSSVGFVETIEKDLAELRGKGVDAQIA 197 (421)
Q Consensus 139 ~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P--------~S~~~yl~~l~~~l~~~~~~g~g~~IA 197 (421)
++++...|++|++.|++.|.+|.=.+|.+.++ ....+.|.++.+..++. |.|.+|+
T Consensus 114 i~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~---G~GV~la 177 (382)
T TIGR02631 114 LRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQ---GYGLRFA 177 (382)
T ss_pred HHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhh---CCCcEEE
No 103
>PLN02962 hydroxyacylglutathione hydrolase
Probab=21.87 E-value=77 Score=31.24 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=21.0
Q ss_pred ccccHHHHHHHHHHHHHc-CCCeEEEEE
Q 014659 135 VHSRLDQLQLLLKGASER-GAKRIRLHI 161 (421)
Q Consensus 135 VHSh~~Hl~al~~~a~~~-gv~~v~vH~ 161 (421)
-|.|.||+-++-.++++. |+ ++++|.
T Consensus 68 TH~H~DHigg~~~l~~~~~~a-~v~~~~ 94 (251)
T PLN02962 68 THVHADHVTGTGLLKTKLPGV-KSIISK 94 (251)
T ss_pred CCCCchhHHHHHHHHHHCCCC-eEEecc
Confidence 699999999999888775 67 566653
No 104
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=21.69 E-value=1e+02 Score=27.27 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=24.7
Q ss_pred EEeecCCCccccHHHHHHHHHHHHHc-CCCeEEEEE
Q 014659 127 IGLLSDGGVHSRLDQLQLLLKGASER-GAKRIRLHI 161 (421)
Q Consensus 127 ~GLlSDGGVHSh~~Hl~al~~~a~~~-gv~~v~vH~ 161 (421)
++++|| +|.....+.++++..+.. ++. ..||+
T Consensus 3 i~viSD--~H~~~~~~~~~~~~~~~~~~~d-~ii~~ 35 (158)
T TIGR00040 3 ILVISD--THGPLRATELPVELFNLESNVD-LVIHA 35 (158)
T ss_pred EEEEec--ccCCcchhHhHHHHHhhccCCC-EEEEc
Confidence 688999 898888788888888777 665 44775
No 105
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=21.58 E-value=2.7e+02 Score=23.51 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=14.7
Q ss_pred ceEEEEeecCCCccccHHHHHHHHHHHHHcCC
Q 014659 123 TLHLIGLLSDGGVHSRLDQLQLLLKGASERGA 154 (421)
Q Consensus 123 ~lHl~GLlSDGGVHSh~~Hl~al~~~a~~~gv 154 (421)
+-.++=|+|||-.++.. ....+++.++++|+
T Consensus 103 ~~~~iiliTDG~~~~~~-~~~~~~~~~~~~~v 133 (161)
T cd01450 103 VPKVIIVLTDGRSDDGG-DPKEAAAKLKDEGI 133 (161)
T ss_pred CCeEEEEECCCCCCCCc-chHHHHHHHHHCCC
Confidence 34455555555444322 34444555555544
No 106
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=21.28 E-value=58 Score=27.80 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=17.1
Q ss_pred ccccHHHHHHHHHHHHHcCC
Q 014659 135 VHSRLDQLQLLLKGASERGA 154 (421)
Q Consensus 135 VHSh~~Hl~al~~~a~~~gv 154 (421)
-|+|.||..++-.+..+...
T Consensus 50 TH~H~DH~ggl~~~~~~~~~ 69 (194)
T PF00753_consen 50 THAHPDHIGGLPELLEAGPV 69 (194)
T ss_dssp SSSSHHHHTTHHHHHHHTTE
T ss_pred Ccccccccccccccccccce
Confidence 59999999999988887654
No 107
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=21.06 E-value=40 Score=34.10 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.7
Q ss_pred ccccHHHHHHHHHHHHHc
Q 014659 135 VHSRLDQLQLLLKGASER 152 (421)
Q Consensus 135 VHSh~~Hl~al~~~a~~~ 152 (421)
-|+|.||+..|-.++++.
T Consensus 86 TH~H~DHi~GL~~L~~~~ 103 (302)
T TIGR02108 86 TDGEIDHTTGLLTLREGQ 103 (302)
T ss_pred eCCCcchhhCHHHHcCCC
Confidence 499999999998886443
No 108
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.78 E-value=95 Score=30.85 Aligned_cols=98 Identities=22% Similarity=0.349 Sum_probs=59.2
Q ss_pred cccccCCccceeccc---hHHHHHHHh----cC----CC------ccchhHhhhhhhc-CCCceEEEEeecCCCccccHH
Q 014659 79 VGHNALGAGRIFAQG---AKLVDLALA----SG----KI------YQDEGFNYIKPSF-ETGTLHLIGLLSDGGVHSRLD 140 (421)
Q Consensus 79 VGHlniGAGRvv~Q~---l~rI~~aI~----~g----~~------~~n~~l~~~~~~~-~~~~lHl~GLlSDGGVHSh~~ 140 (421)
+|--+|-.|-.-.|. .+.++.||+ -| .| ...+.++.+.+++ ++| |-|=--||+ ..|
T Consensus 116 ~G~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g----~~lEPTGGI--dl~ 189 (236)
T TIGR03581 116 PGLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHG----FYLEPTGGI--DLD 189 (236)
T ss_pred cceEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcC----CccCCCCCc--cHH
Confidence 556667777444442 456666654 11 22 3344455555555 444 225566887 789
Q ss_pred HHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHH
Q 014659 141 QLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDL 184 (421)
Q Consensus 141 Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l 184 (421)
|+..+++.|.+.|+++|.=|++++=-| +.+|..=.+++.+.+
T Consensus 190 Nf~~I~~i~ldaGv~kviPHIYssiID--k~tG~TrpedV~~l~ 231 (236)
T TIGR03581 190 NFEEIVQIALDAGVEKVIPHVYSSIID--KETGNTRVEDVKQLL 231 (236)
T ss_pred hHHHHHHHHHHcCCCeeccccceeccc--cccCCCCHHHHHHHH
Confidence 999999999999999999999875433 344444444444433
No 109
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=20.78 E-value=2.7e+02 Score=31.11 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=11.0
Q ss_pred eEEEEEEecCCCCCC
Q 014659 156 RIRLHILTDGRDVLD 170 (421)
Q Consensus 156 ~v~vH~f~DGRDt~P 170 (421)
+..|-+||||+++.+
T Consensus 565 ~~~vvliTDG~~n~~ 579 (633)
T TIGR02442 565 RPLLVVITDGRANVA 579 (633)
T ss_pred ceEEEEECCCCCCCC
Confidence 456788888888664
No 110
>PRK06846 putative deaminase; Validated
Probab=20.59 E-value=7e+02 Score=25.77 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=52.1
Q ss_pred CCCceEEEEeecCCC-ccccHHHHHHHHHHHHHcCCCeEEEEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEE
Q 014659 120 ETGTLHLIGLLSDGG-VHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIAS 198 (421)
Q Consensus 120 ~~~~lHl~GLlSDGG-VHSh~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IAS 198 (421)
+.|.. ++|-+.... -++..+||.++.++|+++|+ .|.+|+---. + .+...++.+-+.+.+. |..+++
T Consensus 186 ~~Ga~-~i~gl~p~~~~~~~~~~l~~~~~lA~~~g~-~v~~Hv~e~~-~----~~~~~~~~~~~~~~~~---gl~~~v-- 253 (410)
T PRK06846 186 KMGAH-LVGGVDPASVDGAIEKSLDTMFQIAVDFNK-GVDIHLHDTG-P----LGVATIKYLVETTEEA---QWKGKV-- 253 (410)
T ss_pred HcCCC-EEeCCCCccCCcCHHHHHHHHHHHHHHhCC-CcEEEECCCC-C----hhHHHHHHHHHHHHHh---CCCCCE--
Confidence 33433 555443332 36677999999999999999 4889986322 1 2344445555555665 543222
Q ss_pred EeecccccccCCCCChHHHHHHHHHHHh
Q 014659 199 GGGRMYVTMDRYENDWDVVKRGWDAQVL 226 (421)
Q Consensus 199 v~GRyyvaMDR~D~rW~Rv~~ay~a~v~ 226 (421)
..+=.. .|. +..|+.+++.++.+..
T Consensus 254 ~~~H~~-~l~--~~~~~e~~~li~~la~ 278 (410)
T PRK06846 254 TISHAF-ALG--DLNEEEVEELAERLAA 278 (410)
T ss_pred EEEecc-hhh--cCCHHHHHHHHHHHHH
Confidence 222222 332 2355666666666654
No 111
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=20.01 E-value=2.9e+02 Score=27.62 Aligned_cols=103 Identities=20% Similarity=0.355 Sum_probs=68.6
Q ss_pred eeccchHHHHHHHhcC---CCccchhHhhhhhhcCCCceEEE-----EeecCCC--ccccHHHHHHHHHHHHHcCCCeEE
Q 014659 89 IFAQGAKLVDLALASG---KIYQDEGFNYIKPSFETGTLHLI-----GLLSDGG--VHSRLDQLQLLLKGASERGAKRIR 158 (421)
Q Consensus 89 vv~Q~l~rI~~aI~~g---~~~~n~~l~~~~~~~~~~~lHl~-----GLlSDGG--VHSh~~Hl~al~~~a~~~gv~~v~ 158 (421)
|-.+|+.+|.+.++.. ++.-.+.+.++...++...+=|+ .+-|+|| |.+|.++|..+++.+++.|+ .
T Consensus 49 I~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI---~ 125 (234)
T cd00003 49 IQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGI---R 125 (234)
T ss_pred CCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCC---E
Confidence 4578999999988632 45556666665544433222222 3558898 67799999999999999998 3
Q ss_pred EEEEecCCCCCCCchHHHHHHHHHHHHHHhcCCCCceEEEEeecccccccC
Q 014659 159 LHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDR 209 (421)
Q Consensus 159 vH~f~DGRDt~P~S~~~yl~~l~~~l~~~~~~g~g~~IASv~GRyyvaMDR 209 (421)
|=+|.|- . .++++.. +++ |.. .|===.|.|--+++.
T Consensus 126 VSLFiDP-----d-----~~qi~~A-~~~---GAd-~VELhTG~Ya~a~~~ 161 (234)
T cd00003 126 VSLFIDP-----D-----PEQIEAA-KEV---GAD-RVELHTGPYANAYDK 161 (234)
T ss_pred EEEEeCC-----C-----HHHHHHH-HHh---CcC-EEEEechhhhcCCCc
Confidence 6778862 2 3555442 334 664 666668899546654
Done!