BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014660
(421 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FOS|E Chain E, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|G Chain G, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
KR R++ N+ +A +SR R++ + L + D L DE ++L++EI L + EKL
Sbjct: 1 KRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 55
>pdb|1A02|F Chain F, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
+KR R++ N+ +A +SR R++ + L + D L DE ++L++EI L + EKL
Sbjct: 1 MKRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|2WT7|A Chain A, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 63
Score = 36.6 bits (83), Expect = 0.026, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336
KR R++ N+ +A + R R++ + L + D L DE ++L++EI L + EKL
Sbjct: 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
Site Dna
Length = 63
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL 329
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L
Sbjct: 12 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 56
>pdb|1DGC|A Chain A, The X-Ray Structure Of The Gcn4-Bzip Bound To AtfCREB SITE
Dna Shows The Complex Depends On Dna Flexibility
Length = 62
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL 329
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L
Sbjct: 11 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 55
>pdb|1YSA|C Chain C, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
pdb|1YSA|D Chain D, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
Length = 58
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L +
Sbjct: 7 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 53
>pdb|1LD4|E Chain E, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|F Chain F, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|G Chain G, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|H Chain H, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|I Chain I, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|J Chain J, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|K Chain K, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|L Chain L, Placement Of The Structural Proteins In Sindbis Virus
Length = 57
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQL 329
LKR R N E+ARRSR RK ++L KV+ L+ +N L++E+ +L
Sbjct: 6 LKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 50
>pdb|2WTY|A Chain A, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
pdb|2WTY|B Chain B, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
Length = 97
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340
LK++RR NR A+ R ++ + L + LI + LK E+++L+ R+ +
Sbjct: 30 LKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA------RERD 83
Query: 341 AALLEKLKSAQLGN 354
A K+KS +L N
Sbjct: 84 AY---KVKSEKLAN 94
>pdb|2WT7|B Chain B, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 90
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340
LK++RR NR A+ R ++ + L + LI + LK E+++L+ R+ +
Sbjct: 26 LKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA------RERD 79
Query: 341 AALLEKLKSAQLGN 354
A K+KS +L N
Sbjct: 80 AY---KVKSEKLAN 90
>pdb|1CI6|B Chain B, Transcription Factor Atf4-CEBP BETA BZIP HETERODIMER
Length = 63
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337
++ + R++ N + R+SR + + E KV L EN L+ ++ QLS LR
Sbjct: 1 MEYKMRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 57
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
+K ER++ NR +A +SR RK L KV +L +N+ L S N L E +L+Q+
Sbjct: 1 MKAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 59
>pdb|3S4R|A Chain A, Crystal Structure Of Vimentin Coil1a1B FRAGMENT WITH A
STABILIZING Mutation
pdb|3S4R|B Chain B, Crystal Structure Of Vimentin Coil1a1B FRAGMENT WITH A
STABILIZING Mutation
Length = 93
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
+ E EL R+VD L ++ A ++ E + L+E+ +LR++
Sbjct: 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92
>pdb|3SSU|A Chain A, Crystal Structure Of Vimentin Coil1a1B FRAGMENT
pdb|3SSU|B Chain B, Crystal Structure Of Vimentin Coil1a1B FRAGMENT
Length = 93
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
+ E EL R+VD L ++ A ++ E + L+E+ +LR++
Sbjct: 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
ER++ NR +A +SR RK L KV +L +N+ L S N L E +L+Q+
Sbjct: 3 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58
>pdb|3A5T|A Chain A, Crystal Structure Of Mafg-Dna Complex
pdb|3A5T|B Chain B, Crystal Structure Of Mafg-Dna Complex
Length = 107
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 255 VKASPTSVPQPCAVLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRK--- 311
V S + Q L E IQ LK+ RR NR A R+++ + EEL ++
Sbjct: 14 VTXSVRELNQHLRGLSKEEIIQ----LKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAE 69
Query: 312 ----VDSLIDENASLKSEINQLSENSEKL 336
V+ L ENAS K E++ L E L
Sbjct: 70 LQQEVEKLASENASXKLELDALRSKYEAL 98
>pdb|3SWK|A Chain A, Crystal Structure Of Vimentin Coil1b Fragment
pdb|3SWK|B Chain B, Crystal Structure Of Vimentin Coil1b Fragment
Length = 86
Score = 28.5 bits (62), Expect = 7.5, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339
E EL R+VD L ++ A ++ E + L+E+ +LR++
Sbjct: 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 36
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
Length = 55
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331
KRE R NRE+AR SR +K+ + L +V L ++N +L E+ L +
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.125 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,279,276
Number of Sequences: 62578
Number of extensions: 427875
Number of successful extensions: 1021
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 66
length of query: 421
length of database: 14,973,337
effective HSP length: 101
effective length of query: 320
effective length of database: 8,652,959
effective search space: 2768946880
effective search space used: 2768946880
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.0 bits)