Query 014660
Match_columns 421
No_of_seqs 192 out of 928
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 07:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07777 MFMR: G-box binding p 100.0 5.5E-72 1.2E-76 518.0 15.5 179 1-180 1-189 (189)
2 PF00170 bZIP_1: bZIP transcri 99.5 2.9E-13 6.4E-18 105.4 9.4 64 278-341 1-64 (64)
3 smart00338 BRLZ basic region l 99.4 1.2E-12 2.6E-17 102.1 9.1 61 280-340 3-63 (65)
4 KOG3584 cAMP response element 99.3 4.7E-12 1E-16 125.0 7.0 64 272-335 281-344 (348)
5 KOG4343 bZIP transcription fac 99.2 2.1E-11 4.6E-16 128.0 7.9 71 275-345 274-344 (655)
6 KOG0709 CREB/ATF family transc 99.2 1.8E-11 3.9E-16 127.0 7.1 74 276-349 245-318 (472)
7 KOG4005 Transcription factor X 99.2 1.7E-10 3.8E-15 111.7 10.6 71 280-350 67-137 (292)
8 PF07716 bZIP_2: Basic region 99.1 5.6E-10 1.2E-14 84.8 8.8 50 281-331 4-53 (54)
9 KOG0837 Transcriptional activa 98.4 9.6E-07 2.1E-11 86.8 9.2 68 275-349 199-266 (279)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.4 4.1E-09 8.9E-14 88.0 -6.5 68 276-343 24-91 (92)
11 KOG3119 Basic region leucine z 98.0 2.5E-05 5.3E-10 77.0 8.7 57 285-348 197-253 (269)
12 KOG4571 Activating transcripti 97.7 0.00022 4.7E-09 71.4 10.1 52 285-336 230-281 (294)
13 KOG4196 bZIP transcription fac 97.7 0.00042 9E-09 62.4 10.4 69 276-351 47-115 (135)
14 KOG3863 bZIP transcription fac 97.2 0.00063 1.4E-08 73.8 6.7 66 282-347 490-555 (604)
15 PRK10884 SH3 domain-containing 96.7 0.023 4.9E-07 54.6 11.6 72 278-349 99-171 (206)
16 PF06156 DUF972: Protein of un 96.4 0.014 3.1E-07 50.8 7.9 50 303-352 8-57 (107)
17 PRK13169 DNA replication intia 96.0 0.032 6.9E-07 49.1 7.9 49 303-351 8-56 (110)
18 PF06005 DUF904: Protein of un 95.8 0.066 1.4E-06 43.8 8.2 47 304-350 5-51 (72)
19 TIGR02894 DNA_bind_RsfA transc 95.7 0.045 9.7E-07 51.1 8.0 77 275-351 59-138 (161)
20 PF10224 DUF2205: Predicted co 95.5 0.084 1.8E-06 44.2 8.0 46 305-350 18-63 (80)
21 PRK13729 conjugal transfer pil 95.2 0.091 2E-06 56.2 9.1 48 302-349 75-122 (475)
22 COG3074 Uncharacterized protei 95.1 0.082 1.8E-06 43.7 6.5 49 303-351 18-66 (79)
23 PRK10884 SH3 domain-containing 95.0 0.36 7.8E-06 46.5 11.7 60 296-355 111-170 (206)
24 TIGR02449 conserved hypothetic 94.9 0.13 2.9E-06 41.5 7.1 46 305-350 2-47 (65)
25 PF13747 DUF4164: Domain of un 94.6 0.67 1.4E-05 39.2 11.0 74 277-350 6-79 (89)
26 COG4467 Regulator of replicati 94.5 0.13 2.8E-06 45.4 6.7 47 303-349 8-54 (114)
27 PF06005 DUF904: Protein of un 94.3 0.31 6.7E-06 39.9 8.2 45 304-348 19-63 (72)
28 TIGR02449 conserved hypothetic 94.3 0.3 6.5E-06 39.5 7.9 47 303-349 7-53 (65)
29 COG4026 Uncharacterized protei 94.2 0.27 5.8E-06 48.7 9.0 53 298-350 137-189 (290)
30 PF09726 Macoilin: Transmembra 94.2 0.42 9.1E-06 53.5 11.6 41 306-346 541-581 (697)
31 KOG1414 Transcriptional activa 94.1 0.0022 4.8E-08 66.4 -5.8 62 275-336 147-212 (395)
32 PRK15422 septal ring assembly 94.0 0.27 6E-06 41.2 7.4 49 303-351 18-66 (79)
33 KOG4005 Transcription factor X 93.9 0.61 1.3E-05 46.5 10.8 48 303-350 97-144 (292)
34 PF08614 ATG16: Autophagy prot 93.9 1 2.2E-05 42.3 11.9 69 282-350 116-184 (194)
35 PF10473 CENP-F_leu_zip: Leuci 93.8 1.2 2.6E-05 40.8 11.7 67 285-351 34-100 (140)
36 PF11559 ADIP: Afadin- and alp 93.6 1.1 2.5E-05 40.1 11.3 68 282-349 45-112 (151)
37 PF04102 SlyX: SlyX; InterPro 93.5 0.38 8.2E-06 38.6 7.2 50 302-351 3-52 (69)
38 PF02183 HALZ: Homeobox associ 93.4 0.26 5.6E-06 37.0 5.6 36 315-350 3-38 (45)
39 PF11932 DUF3450: Protein of u 93.1 0.77 1.7E-05 44.5 10.1 45 306-350 52-96 (251)
40 TIGR00219 mreC rod shape-deter 93.1 0.21 4.5E-06 49.9 6.3 40 311-350 67-110 (283)
41 PF04880 NUDE_C: NUDE protein, 92.8 0.17 3.6E-06 47.6 4.8 42 305-350 2-43 (166)
42 PF10186 Atg14: UV radiation r 92.5 1.6 3.5E-05 41.8 11.4 47 301-347 61-107 (302)
43 KOG1962 B-cell receptor-associ 92.4 0.8 1.7E-05 44.7 9.0 48 301-348 163-210 (216)
44 PRK11637 AmiB activator; Provi 92.4 1.7 3.6E-05 45.3 12.0 54 297-350 69-122 (428)
45 PF06156 DUF972: Protein of un 92.4 0.58 1.2E-05 40.9 7.3 45 307-351 5-49 (107)
46 PRK00295 hypothetical protein; 92.4 0.99 2.1E-05 36.4 8.1 49 303-351 5-53 (68)
47 PRK04325 hypothetical protein; 92.3 0.95 2.1E-05 37.1 8.0 49 303-351 9-57 (74)
48 PF02183 HALZ: Homeobox associ 92.2 0.5 1.1E-05 35.5 5.8 42 307-348 2-43 (45)
49 PRK00736 hypothetical protein; 92.2 1 2.3E-05 36.3 8.0 49 303-351 5-53 (68)
50 PRK02119 hypothetical protein; 92.2 0.94 2E-05 37.0 7.8 50 302-351 8-57 (73)
51 PRK02793 phi X174 lysis protei 92.1 0.97 2.1E-05 36.8 7.8 51 302-352 7-57 (72)
52 PRK11637 AmiB activator; Provi 91.9 1.8 3.9E-05 45.0 11.5 53 299-351 64-116 (428)
53 PRK13922 rod shape-determining 91.8 1.1 2.4E-05 43.8 9.3 40 311-350 70-112 (276)
54 KOG3335 Predicted coiled-coil 91.8 0.23 4.9E-06 47.2 4.3 42 283-330 92-133 (181)
55 KOG0982 Centrosomal protein Nu 91.7 1.2 2.6E-05 47.5 10.0 50 301-350 295-344 (502)
56 PF11559 ADIP: Afadin- and alp 91.7 2.7 5.8E-05 37.7 11.0 69 282-350 59-127 (151)
57 PRK04406 hypothetical protein; 91.6 1.2 2.7E-05 36.6 8.0 49 303-351 11-59 (75)
58 PF07106 TBPIP: Tat binding pr 91.4 1 2.2E-05 41.1 8.1 52 301-352 84-137 (169)
59 PF12718 Tropomyosin_1: Tropom 91.1 1.1 2.4E-05 40.8 7.9 49 302-350 13-61 (143)
60 PRK00888 ftsB cell division pr 91.1 0.86 1.9E-05 39.5 6.9 33 299-331 30-62 (105)
61 smart00338 BRLZ basic region l 91.0 2.2 4.9E-05 33.2 8.6 41 308-348 24-64 (65)
62 PRK00846 hypothetical protein; 90.8 1.7 3.7E-05 36.3 8.0 50 302-351 12-61 (77)
63 PF11932 DUF3450: Protein of u 90.7 4.1 8.8E-05 39.6 12.0 55 296-350 49-103 (251)
64 KOG4196 bZIP transcription fac 90.5 0.92 2E-05 41.4 6.8 32 320-351 77-108 (135)
65 TIGR03752 conj_TIGR03752 integ 90.4 0.94 2E-05 48.7 7.9 34 316-349 108-141 (472)
66 COG3074 Uncharacterized protei 90.4 1.6 3.6E-05 36.2 7.5 51 300-350 22-72 (79)
67 KOG2391 Vacuolar sorting prote 90.1 8.7 0.00019 40.2 14.2 49 301-349 230-278 (365)
68 PRK13169 DNA replication intia 90.1 1.3 2.8E-05 39.1 7.3 47 306-352 4-50 (110)
69 PF00170 bZIP_1: bZIP transcri 89.6 4.1 8.8E-05 31.7 9.0 37 310-346 26-62 (64)
70 KOG1029 Endocytic adaptor prot 89.4 2.8 6.1E-05 47.8 10.8 19 331-349 437-455 (1118)
71 PF08172 CASP_C: CASP C termin 89.3 1.6 3.4E-05 43.2 8.0 39 306-351 96-134 (248)
72 PF08172 CASP_C: CASP C termin 89.3 1.4 3.1E-05 43.5 7.7 49 282-331 87-135 (248)
73 PRK15422 septal ring assembly 89.2 2.2 4.8E-05 35.9 7.5 47 302-348 24-70 (79)
74 PF01166 TSC22: TSC-22/dip/bun 88.8 0.53 1.1E-05 37.5 3.4 33 317-349 14-46 (59)
75 PF04728 LPP: Lipoprotein leuc 88.7 3.9 8.4E-05 32.4 8.2 48 303-350 3-50 (56)
76 COG4026 Uncharacterized protei 88.6 2 4.3E-05 42.8 8.0 42 306-347 138-179 (290)
77 PF07888 CALCOCO1: Calcium bin 88.6 5.2 0.00011 44.0 11.9 37 291-327 159-195 (546)
78 KOG1414 Transcriptional activa 88.6 0.09 1.9E-06 54.7 -1.3 41 283-323 286-326 (395)
79 PF14197 Cep57_CLD_2: Centroso 88.5 3.2 7E-05 33.7 7.9 47 304-350 13-66 (69)
80 PF13851 GAS: Growth-arrest sp 88.4 8.1 0.00017 37.0 11.9 63 275-337 65-127 (201)
81 PRK00888 ftsB cell division pr 88.4 1.9 4.1E-05 37.4 7.0 57 304-360 28-85 (105)
82 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.4 9.6 0.00021 33.8 11.6 32 318-349 99-130 (132)
83 COG1579 Zn-ribbon protein, pos 88.2 4.3 9.4E-05 40.3 10.1 48 302-349 88-135 (239)
84 PRK09039 hypothetical protein; 88.1 5.8 0.00013 40.8 11.4 6 393-398 226-231 (343)
85 PF05103 DivIVA: DivIVA protei 88.1 0.27 5.8E-06 42.3 1.6 49 303-351 25-73 (131)
86 PF05700 BCAS2: Breast carcino 87.9 6.5 0.00014 37.9 11.0 54 297-351 163-216 (221)
87 COG2433 Uncharacterized conser 87.8 1.8 4E-05 47.9 7.9 45 304-348 423-467 (652)
88 PF04111 APG6: Autophagy prote 87.7 7.9 0.00017 39.4 12.0 12 335-346 110-121 (314)
89 PF10186 Atg14: UV radiation r 87.6 7.8 0.00017 37.2 11.4 38 297-334 64-101 (302)
90 PF03962 Mnd1: Mnd1 family; I 87.6 3.4 7.5E-05 39.1 8.8 49 301-350 81-129 (188)
91 KOG1962 B-cell receptor-associ 87.6 4.3 9.2E-05 39.8 9.5 43 308-350 149-191 (216)
92 PF06785 UPF0242: Uncharacteri 87.5 5 0.00011 41.9 10.4 52 299-350 123-174 (401)
93 PF04111 APG6: Autophagy prote 87.4 2.3 5.1E-05 43.1 8.0 35 309-343 49-83 (314)
94 PF14197 Cep57_CLD_2: Centroso 87.4 3.8 8.3E-05 33.3 7.7 23 307-329 9-31 (69)
95 KOG3650 Predicted coiled-coil 87.4 2.5 5.4E-05 37.3 7.0 40 311-350 64-103 (120)
96 KOG0977 Nuclear envelope prote 87.4 1.9 4.1E-05 47.3 7.7 67 293-359 131-197 (546)
97 PRK02119 hypothetical protein; 87.3 4.3 9.3E-05 33.2 8.0 51 304-354 3-55 (73)
98 PHA02562 46 endonuclease subun 87.3 5.5 0.00012 42.1 11.0 40 306-345 361-400 (562)
99 PF09789 DUF2353: Uncharacteri 87.2 5.3 0.00011 41.2 10.4 50 305-354 67-116 (319)
100 TIGR02894 DNA_bind_RsfA transc 87.2 6.5 0.00014 37.1 10.1 41 298-338 106-146 (161)
101 PF12711 Kinesin-relat_1: Kine 87.0 3.2 7E-05 35.3 7.3 38 314-351 21-64 (86)
102 PF05266 DUF724: Protein of un 87.0 7.1 0.00015 37.3 10.5 58 284-341 91-148 (190)
103 KOG2236 Uncharacterized conser 86.9 0.9 2E-05 48.7 4.9 32 44-84 420-454 (483)
104 PF15294 Leu_zip: Leucine zipp 86.8 2 4.3E-05 43.5 7.0 45 308-352 130-174 (278)
105 PF08826 DMPK_coil: DMPK coile 86.8 10 0.00022 30.4 9.6 44 308-351 16-59 (61)
106 PF10473 CENP-F_leu_zip: Leuci 86.7 13 0.00028 34.2 11.6 75 275-349 6-84 (140)
107 PF05266 DUF724: Protein of un 86.7 9.9 0.00021 36.3 11.3 52 300-351 128-179 (190)
108 PF12325 TMF_TATA_bd: TATA ele 86.6 4.6 0.0001 36.1 8.5 39 281-319 22-60 (120)
109 PF09755 DUF2046: Uncharacteri 86.5 1.7 3.7E-05 44.6 6.5 46 306-351 23-68 (310)
110 COG1579 Zn-ribbon protein, pos 86.5 9.2 0.0002 38.0 11.3 65 286-350 35-108 (239)
111 PF09744 Jnk-SapK_ap_N: JNK_SA 86.4 4.4 9.6E-05 37.7 8.6 18 314-331 86-103 (158)
112 PRK04406 hypothetical protein; 86.3 5.3 0.00012 32.9 8.1 46 305-350 6-51 (75)
113 COG4942 Membrane-bound metallo 86.2 8.1 0.00017 41.3 11.4 70 282-351 38-107 (420)
114 PRK10803 tol-pal system protei 86.2 5.6 0.00012 39.3 9.7 44 306-349 57-100 (263)
115 PF12709 Kinetocho_Slk19: Cent 86.1 4 8.6E-05 34.9 7.4 43 301-343 40-82 (87)
116 KOG4571 Activating transcripti 85.9 4.8 0.0001 41.1 9.1 58 280-337 229-289 (294)
117 PF10805 DUF2730: Protein of u 85.9 3.7 7.9E-05 35.5 7.3 41 304-344 50-92 (106)
118 PF09738 DUF2051: Double stran 85.8 3.2 6.9E-05 42.3 8.0 73 277-349 87-165 (302)
119 PF05278 PEARLI-4: Arabidopsis 85.8 12 0.00026 37.9 11.9 49 302-350 206-254 (269)
120 KOG2264 Exostosin EXT1L [Signa 85.8 2.7 5.8E-05 46.6 7.8 53 302-354 92-144 (907)
121 PF04977 DivIC: Septum formati 85.7 3 6.6E-05 32.7 6.2 31 300-330 21-51 (80)
122 KOG0977 Nuclear envelope prote 85.6 6.3 0.00014 43.4 10.5 69 278-346 123-191 (546)
123 KOG1029 Endocytic adaptor prot 85.5 7.1 0.00015 44.8 11.0 22 328-349 441-462 (1118)
124 PF07888 CALCOCO1: Calcium bin 85.1 11 0.00023 41.6 11.9 26 321-346 210-235 (546)
125 KOG0250 DNA repair protein RAD 84.7 8.5 0.00018 45.3 11.5 57 294-350 370-427 (1074)
126 KOG4797 Transcriptional regula 84.7 1.4 3E-05 39.3 4.1 27 320-346 70-96 (123)
127 PF05377 FlaC_arch: Flagella a 84.5 4 8.7E-05 32.2 6.2 33 305-337 2-34 (55)
128 PF15058 Speriolin_N: Sperioli 84.5 2.3 4.9E-05 41.2 5.9 38 305-350 7-44 (200)
129 PF10226 DUF2216: Uncharacteri 84.5 7.5 0.00016 37.6 9.3 59 278-336 19-81 (195)
130 PRK02793 phi X174 lysis protei 84.4 7.1 0.00015 31.8 7.9 51 306-356 4-56 (72)
131 PF13815 Dzip-like_N: Iguana/D 84.3 3.2 6.9E-05 36.3 6.3 39 308-346 78-116 (118)
132 PF04156 IncA: IncA protein; 84.2 18 0.0004 33.2 11.6 20 311-330 131-150 (191)
133 COG4467 Regulator of replicati 84.0 4.4 9.5E-05 36.1 6.9 46 307-352 5-50 (114)
134 PF08317 Spc7: Spc7 kinetochor 83.8 10 0.00022 38.5 10.5 45 303-347 209-253 (325)
135 PF09304 Cortex-I_coil: Cortex 83.8 21 0.00047 31.7 11.1 59 283-341 17-75 (107)
136 PF07989 Microtub_assoc: Micro 83.7 4.7 0.0001 33.2 6.6 45 306-350 3-55 (75)
137 PTZ00454 26S protease regulato 83.7 3.2 6.9E-05 43.4 7.1 35 308-342 27-61 (398)
138 PF09726 Macoilin: Transmembra 83.7 8.9 0.00019 43.2 10.9 8 371-378 589-596 (697)
139 PF14662 CCDC155: Coiled-coil 83.5 4.3 9.3E-05 39.2 7.3 28 323-350 66-93 (193)
140 KOG0995 Centromere-associated 83.5 6.1 0.00013 43.6 9.2 47 302-348 279-325 (581)
141 KOG1853 LIS1-interacting prote 83.4 9.2 0.0002 38.8 9.8 93 303-398 52-160 (333)
142 PF05529 Bap31: B-cell recepto 83.3 13 0.00027 34.7 10.2 37 315-351 152-188 (192)
143 PF12808 Mto2_bdg: Micro-tubul 82.9 3.8 8.3E-05 31.9 5.5 48 301-351 2-49 (52)
144 PF04977 DivIC: Septum formati 82.9 5.2 0.00011 31.4 6.5 32 305-336 19-50 (80)
145 PF14662 CCDC155: Coiled-coil 82.8 7.5 0.00016 37.6 8.6 39 309-347 101-139 (193)
146 PF12329 TMF_DNA_bd: TATA elem 82.8 8.9 0.00019 31.4 7.9 50 301-350 10-59 (74)
147 KOG0804 Cytoplasmic Zn-finger 82.8 9.6 0.00021 41.2 10.2 76 285-361 367-450 (493)
148 PF15397 DUF4618: Domain of un 82.7 19 0.00042 36.2 11.8 54 308-361 177-232 (258)
149 COG2900 SlyX Uncharacterized p 82.5 9.9 0.00021 31.6 8.0 51 302-352 7-57 (72)
150 PF07106 TBPIP: Tat binding pr 82.4 4.5 9.8E-05 37.0 6.8 47 305-351 81-129 (169)
151 COG3883 Uncharacterized protei 82.3 12 0.00025 37.9 10.0 92 288-381 44-139 (265)
152 PF07407 Seadorna_VP6: Seadorn 82.1 2.4 5.2E-05 44.1 5.3 24 313-336 35-58 (420)
153 PF04871 Uso1_p115_C: Uso1 / p 82.0 25 0.00054 31.9 11.2 46 305-350 64-110 (136)
154 PF07412 Geminin: Geminin; In 82.0 4.2 9.2E-05 39.4 6.7 30 318-347 126-155 (200)
155 PRK00295 hypothetical protein; 81.9 9 0.00019 30.9 7.5 43 308-350 3-45 (68)
156 PF08232 Striatin: Striatin fa 81.9 9.2 0.0002 34.5 8.4 47 306-352 28-74 (134)
157 PF08317 Spc7: Spc7 kinetochor 81.7 9.7 0.00021 38.6 9.5 12 335-346 234-245 (325)
158 PF01486 K-box: K-box region; 81.7 22 0.00048 29.9 10.2 46 303-348 49-99 (100)
159 PF10211 Ax_dynein_light: Axon 81.7 14 0.00031 35.0 10.0 42 305-346 122-163 (189)
160 PF13118 DUF3972: Protein of u 81.7 5.7 0.00012 36.1 7.0 47 305-351 80-126 (126)
161 KOG3119 Basic region leucine z 81.5 7.8 0.00017 38.6 8.6 47 288-334 207-253 (269)
162 PHA02562 46 endonuclease subun 81.3 15 0.00031 39.0 11.0 11 140-150 29-39 (562)
163 PF05377 FlaC_arch: Flagella a 81.3 5.4 0.00012 31.5 5.8 36 312-347 2-37 (55)
164 PRK03918 chromosome segregatio 81.2 17 0.00036 40.8 11.9 15 138-152 23-37 (880)
165 PF08614 ATG16: Autophagy prot 81.0 20 0.00044 33.6 10.8 46 306-351 126-171 (194)
166 PF08647 BRE1: BRE1 E3 ubiquit 81.0 23 0.00051 30.0 10.1 64 286-349 7-70 (96)
167 COG2433 Uncharacterized conser 81.0 9.8 0.00021 42.4 9.7 44 288-331 420-464 (652)
168 PF08826 DMPK_coil: DMPK coile 80.9 16 0.00035 29.3 8.5 37 302-338 24-60 (61)
169 PRK14127 cell division protein 80.8 3.9 8.4E-05 36.1 5.5 35 303-337 30-64 (109)
170 PF09304 Cortex-I_coil: Cortex 80.7 13 0.00027 33.1 8.5 55 295-349 22-76 (107)
171 PF07558 Shugoshin_N: Shugoshi 80.4 1.9 4E-05 32.5 2.9 33 315-347 12-44 (46)
172 PRK04325 hypothetical protein; 80.4 8.6 0.00019 31.5 7.0 46 305-350 4-49 (74)
173 PF09744 Jnk-SapK_ap_N: JNK_SA 80.3 18 0.00039 33.7 10.0 44 307-350 93-136 (158)
174 KOG0946 ER-Golgi vesicle-tethe 80.3 15 0.00032 42.4 11.0 66 285-350 653-718 (970)
175 PF10669 Phage_Gp23: Protein g 80.2 18 0.0004 32.0 9.3 49 275-327 48-96 (121)
176 COG3883 Uncharacterized protei 80.2 7.2 0.00016 39.3 7.8 48 302-349 51-98 (265)
177 TIGR03752 conj_TIGR03752 integ 80.1 3.7 8E-05 44.3 6.1 47 305-351 75-136 (472)
178 PF14988 DUF4515: Domain of un 80.0 27 0.00059 33.7 11.4 47 305-351 151-197 (206)
179 PF10211 Ax_dynein_light: Axon 80.0 36 0.00078 32.3 12.1 23 304-326 128-150 (189)
180 PF04156 IncA: IncA protein; 80.0 33 0.00071 31.5 11.6 59 291-349 118-176 (191)
181 smart00340 HALZ homeobox assoc 79.8 4 8.7E-05 30.8 4.4 24 328-351 9-32 (44)
182 TIGR02169 SMC_prok_A chromosom 79.7 20 0.00042 40.9 12.0 8 140-147 25-32 (1164)
183 PRK02224 chromosome segregatio 79.7 20 0.00043 40.4 11.9 51 297-347 503-553 (880)
184 PF15035 Rootletin: Ciliary ro 79.6 7.9 0.00017 36.7 7.5 44 306-349 70-113 (182)
185 PF13851 GAS: Growth-arrest sp 79.6 30 0.00064 33.2 11.5 40 308-347 91-130 (201)
186 KOG1103 Predicted coiled-coil 79.6 7.5 0.00016 41.1 7.9 60 292-351 227-286 (561)
187 PF15556 Zwint: ZW10 interacto 79.5 30 0.00066 34.2 11.5 64 286-349 117-180 (252)
188 PF10805 DUF2730: Protein of u 79.4 19 0.00042 31.1 9.3 48 303-350 42-91 (106)
189 PRK13729 conjugal transfer pil 79.3 6.6 0.00014 42.5 7.6 47 302-348 82-128 (475)
190 PRK12705 hypothetical protein; 79.3 17 0.00036 39.8 10.7 24 308-331 93-116 (508)
191 PF12325 TMF_TATA_bd: TATA ele 79.2 35 0.00076 30.5 11.0 11 338-348 96-106 (120)
192 TIGR02231 conserved hypothetic 78.9 24 0.00051 37.8 11.7 45 307-351 128-172 (525)
193 KOG0933 Structural maintenance 78.9 18 0.00039 42.7 11.2 51 301-351 813-863 (1174)
194 PF10205 KLRAQ: Predicted coil 78.7 20 0.00043 31.6 9.1 41 311-351 27-67 (102)
195 KOG2010 Double stranded RNA bi 78.7 7.5 0.00016 40.6 7.5 48 302-349 153-200 (405)
196 cd07596 BAR_SNX The Bin/Amphip 78.6 22 0.00047 32.3 9.9 52 283-334 111-169 (218)
197 PF03670 UPF0184: Uncharacteri 78.5 14 0.00031 31.4 7.9 45 305-349 28-72 (83)
198 KOG2391 Vacuolar sorting prote 78.3 14 0.0003 38.7 9.3 76 277-354 215-290 (365)
199 PF04568 IATP: Mitochondrial A 78.0 12 0.00026 32.6 7.6 44 290-333 56-99 (100)
200 PF04849 HAP1_N: HAP1 N-termin 77.9 4.4 9.5E-05 41.6 5.6 42 310-351 206-247 (306)
201 PF15030 DUF4527: Protein of u 77.8 22 0.00049 35.8 10.3 42 293-334 48-89 (277)
202 PRK14160 heat shock protein Gr 77.5 10 0.00022 37.1 7.7 47 303-349 54-100 (211)
203 PF10224 DUF2205: Predicted co 77.5 11 0.00025 31.6 7.0 34 303-336 30-63 (80)
204 PF03980 Nnf1: Nnf1 ; InterPr 77.3 3.7 8.1E-05 35.0 4.3 31 301-331 78-108 (109)
205 PF11382 DUF3186: Protein of u 77.2 10 0.00023 38.3 8.1 107 303-411 32-138 (308)
206 PF15070 GOLGA2L5: Putative go 77.1 16 0.00034 40.8 10.0 19 300-318 119-137 (617)
207 PF04102 SlyX: SlyX; InterPro 77.0 16 0.00034 29.3 7.5 44 308-351 2-45 (69)
208 PF07558 Shugoshin_N: Shugoshi 76.9 2.7 5.9E-05 31.6 2.9 43 283-326 2-44 (46)
209 PF05529 Bap31: B-cell recepto 76.9 16 0.00034 34.1 8.6 22 310-331 161-182 (192)
210 TIGR02209 ftsL_broad cell divi 76.8 8.5 0.00019 30.9 6.0 32 300-331 28-59 (85)
211 PF09730 BicD: Microtubule-ass 76.8 19 0.00042 40.9 10.7 39 311-349 98-146 (717)
212 COG1382 GimC Prefoldin, chaper 76.8 11 0.00024 33.9 7.2 39 301-339 68-106 (119)
213 KOG1853 LIS1-interacting prote 76.7 36 0.00077 34.8 11.3 53 296-348 126-181 (333)
214 PRK10803 tol-pal system protei 76.7 8.4 0.00018 38.1 7.1 51 297-347 55-105 (263)
215 KOG0971 Microtubule-associated 76.6 27 0.00059 41.0 11.7 44 308-351 330-388 (1243)
216 KOG4343 bZIP transcription fac 76.4 11 0.00023 41.8 8.2 70 271-351 267-336 (655)
217 PRK14162 heat shock protein Gr 76.4 9.9 0.00022 36.6 7.3 11 402-412 149-159 (194)
218 PRK00846 hypothetical protein; 76.4 17 0.00038 30.3 7.7 45 306-350 9-53 (77)
219 PF05667 DUF812: Protein of un 76.3 11 0.00025 41.7 8.7 46 303-348 335-380 (594)
220 smart00340 HALZ homeobox assoc 76.2 4.7 0.0001 30.5 3.9 28 304-331 6-33 (44)
221 PRK00736 hypothetical protein; 76.1 18 0.00039 29.2 7.6 43 308-350 3-45 (68)
222 KOG0980 Actin-binding protein 76.0 22 0.00047 41.3 10.8 68 284-351 447-514 (980)
223 TIGR02209 ftsL_broad cell divi 75.8 11 0.00024 30.3 6.4 33 318-350 25-57 (85)
224 PRK03992 proteasome-activating 75.6 9.5 0.00021 39.4 7.4 45 307-351 5-49 (389)
225 PF04859 DUF641: Plant protein 75.5 9.2 0.0002 34.8 6.4 43 304-346 88-130 (131)
226 PRK04863 mukB cell division pr 75.4 20 0.00043 43.9 10.9 68 282-349 321-401 (1486)
227 PRK15396 murein lipoprotein; P 75.4 18 0.0004 30.2 7.7 46 304-349 26-71 (78)
228 PF04728 LPP: Lipoprotein leuc 75.4 18 0.00039 28.7 7.1 38 310-347 3-40 (56)
229 KOG2077 JNK/SAPK-associated pr 75.1 6.7 0.00014 43.7 6.3 45 306-350 325-369 (832)
230 KOG4001 Axonemal dynein light 75.1 30 0.00065 34.3 10.1 23 328-350 232-254 (259)
231 PF12709 Kinetocho_Slk19: Cent 75.0 9.9 0.00021 32.6 6.1 45 305-349 29-74 (87)
232 PF13935 Ead_Ea22: Ead/Ea22-li 74.8 30 0.00065 31.2 9.5 48 303-350 90-138 (139)
233 PF08537 NBP1: Fungal Nap bind 74.8 29 0.00063 36.1 10.5 26 280-305 120-145 (323)
234 PRK14154 heat shock protein Gr 74.7 9.9 0.00021 37.0 6.8 13 402-414 164-176 (208)
235 PF11500 Cut12: Spindle pole b 74.6 28 0.0006 32.6 9.4 53 280-332 82-134 (152)
236 PF02403 Seryl_tRNA_N: Seryl-t 74.4 43 0.00092 28.2 9.9 11 338-348 74-84 (108)
237 TIGR02977 phageshock_pspA phag 74.3 28 0.00061 33.3 9.8 50 302-351 98-147 (219)
238 PF01166 TSC22: TSC-22/dip/bun 74.1 4.2 9E-05 32.6 3.4 27 304-330 15-41 (59)
239 PF12808 Mto2_bdg: Micro-tubul 74.0 11 0.00024 29.5 5.6 27 305-331 24-50 (52)
240 TIGR03545 conserved hypothetic 73.7 11 0.00023 41.5 7.6 64 286-349 174-244 (555)
241 PTZ00454 26S protease regulato 73.7 13 0.00029 38.9 8.0 44 308-351 20-63 (398)
242 PF00038 Filament: Intermediat 73.6 63 0.0014 31.8 12.3 35 315-349 214-248 (312)
243 COG4942 Membrane-bound metallo 73.4 25 0.00054 37.7 9.9 35 305-339 75-109 (420)
244 KOG3248 Transcription factor T 73.4 12 0.00027 39.2 7.4 78 27-106 72-162 (421)
245 PF07716 bZIP_2: Basic region 73.3 33 0.00072 26.0 8.1 21 329-349 30-50 (54)
246 TIGR02231 conserved hypothetic 73.0 40 0.00088 36.1 11.6 40 312-351 126-165 (525)
247 PF11180 DUF2968: Protein of u 72.9 53 0.0012 31.9 11.1 73 277-350 101-173 (192)
248 PF05812 Herpes_BLRF2: Herpesv 72.9 6 0.00013 35.6 4.5 30 301-330 1-30 (118)
249 PF13815 Dzip-like_N: Iguana/D 72.8 16 0.00034 32.0 7.1 44 308-351 71-114 (118)
250 PF14282 FlxA: FlxA-like prote 72.7 12 0.00026 32.3 6.3 44 306-349 29-76 (106)
251 PRK02224 chromosome segregatio 72.7 37 0.00081 38.2 11.7 15 287-301 624-638 (880)
252 PRK14158 heat shock protein Gr 72.6 16 0.00034 35.3 7.6 13 402-414 150-162 (194)
253 PF05911 DUF869: Plant protein 72.6 35 0.00077 39.1 11.5 48 303-350 92-160 (769)
254 PF14915 CCDC144C: CCDC144C pr 72.5 26 0.00057 36.1 9.4 61 291-351 181-241 (305)
255 PF11365 DUF3166: Protein of u 72.5 13 0.00029 32.3 6.4 38 314-351 5-42 (96)
256 KOG1318 Helix loop helix trans 72.5 55 0.0012 35.1 12.1 33 279-311 226-258 (411)
257 COG1730 GIM5 Predicted prefold 72.4 21 0.00046 33.0 8.1 43 306-348 97-139 (145)
258 PF12718 Tropomyosin_1: Tropom 72.4 19 0.00042 32.7 7.8 33 300-332 32-64 (143)
259 PF04880 NUDE_C: NUDE protein, 72.4 5.2 0.00011 37.7 4.2 27 321-348 28-54 (166)
260 PF13863 DUF4200: Domain of un 72.2 39 0.00086 29.0 9.3 32 320-351 77-108 (126)
261 PF14817 HAUS5: HAUS augmin-li 72.2 15 0.00033 41.1 8.4 12 406-417 211-222 (632)
262 cd07596 BAR_SNX The Bin/Amphip 71.8 50 0.0011 29.9 10.4 56 294-349 108-170 (218)
263 PF12329 TMF_DNA_bd: TATA elem 71.6 26 0.00056 28.7 7.6 41 308-348 31-71 (74)
264 PF11180 DUF2968: Protein of u 71.6 37 0.00081 32.9 9.8 31 321-351 151-181 (192)
265 COG1792 MreC Cell shape-determ 71.6 15 0.00032 37.0 7.5 47 301-351 64-110 (284)
266 PRK14161 heat shock protein Gr 71.5 13 0.00028 35.2 6.7 14 402-415 132-145 (178)
267 KOG0249 LAR-interacting protei 71.5 35 0.00076 39.1 10.8 41 311-351 217-257 (916)
268 COG1196 Smc Chromosome segrega 71.3 35 0.00075 40.4 11.5 41 305-345 441-481 (1163)
269 PF08961 DUF1875: Domain of un 71.3 1.3 2.8E-05 43.7 0.0 43 301-343 120-162 (243)
270 KOG2129 Uncharacterized conser 71.3 5.1 0.00011 43.0 4.2 48 306-353 46-93 (552)
271 PRK14155 heat shock protein Gr 71.3 11 0.00024 36.5 6.3 14 402-415 127-140 (208)
272 TIGR00606 rad50 rad50. This fa 71.1 34 0.00073 41.0 11.4 14 295-308 849-862 (1311)
273 PF00038 Filament: Intermediat 71.1 58 0.0013 32.1 11.4 80 271-350 46-136 (312)
274 PF09789 DUF2353: Uncharacteri 71.1 29 0.00063 36.0 9.5 32 320-351 68-99 (319)
275 PF14645 Chibby: Chibby family 71.0 17 0.00037 32.2 6.9 42 305-346 73-114 (116)
276 COG1340 Uncharacterized archae 70.7 61 0.0013 33.4 11.6 33 305-337 50-82 (294)
277 PF06632 XRCC4: DNA double-str 70.6 17 0.00036 37.8 7.8 8 341-348 197-204 (342)
278 PHA03162 hypothetical protein; 70.6 3.1 6.6E-05 38.1 2.2 28 300-327 10-37 (135)
279 COG4372 Uncharacterized protei 70.5 61 0.0013 35.0 11.8 38 313-350 140-177 (499)
280 KOG0709 CREB/ATF family transc 70.5 12 0.00027 40.4 6.9 40 312-351 274-313 (472)
281 smart00787 Spc7 Spc7 kinetocho 70.4 52 0.0011 33.7 11.2 37 304-340 205-241 (312)
282 PHA02682 ORF080 virion core pr 70.3 12 0.00027 36.8 6.3 66 302-383 214-279 (280)
283 PRK11546 zraP zinc resistance 70.2 12 0.00027 34.5 6.0 21 331-351 89-109 (143)
284 KOG4643 Uncharacterized coiled 70.2 37 0.0008 40.2 10.9 45 287-331 502-558 (1195)
285 PRK14872 rod shape-determining 70.1 19 0.00041 37.5 8.0 39 310-348 57-98 (337)
286 PRK10698 phage shock protein P 69.9 64 0.0014 31.3 11.1 48 304-351 100-147 (222)
287 PRK10361 DNA recombination pro 69.7 50 0.0011 36.0 11.3 31 304-334 61-91 (475)
288 PF10018 Med4: Vitamin-D-recep 69.5 35 0.00076 32.0 9.1 13 364-376 76-88 (188)
289 KOG0288 WD40 repeat protein Ti 69.4 53 0.0011 35.5 11.1 44 286-329 26-74 (459)
290 PF04201 TPD52: Tumour protein 69.3 15 0.00032 34.8 6.4 7 405-411 149-155 (162)
291 PF10779 XhlA: Haemolysin XhlA 69.2 24 0.00052 28.3 6.8 30 308-337 18-47 (71)
292 PRK14143 heat shock protein Gr 69.1 21 0.00046 35.4 7.8 12 402-413 178-189 (238)
293 PRK03992 proteasome-activating 69.1 15 0.00032 38.1 7.1 41 305-345 10-50 (389)
294 PRK14139 heat shock protein Gr 69.0 20 0.00043 34.3 7.3 12 402-413 140-151 (185)
295 PF13805 Pil1: Eisosome compon 68.9 22 0.00048 36.1 8.0 75 278-357 123-198 (271)
296 PF05278 PEARLI-4: Arabidopsis 68.6 85 0.0018 32.0 12.0 30 321-350 211-240 (269)
297 PF15290 Syntaphilin: Golgi-lo 68.5 15 0.00032 37.7 6.7 15 365-379 155-169 (305)
298 PF07047 OPA3: Optic atrophy 3 68.4 11 0.00024 33.8 5.3 37 281-323 96-132 (134)
299 PF04420 CHD5: CHD5-like prote 68.2 15 0.00032 33.9 6.1 17 330-346 72-88 (161)
300 PF12999 PRKCSH-like: Glucosid 68.0 31 0.00066 33.0 8.3 32 299-330 142-173 (176)
301 PHA03155 hypothetical protein; 68.0 6.6 0.00014 35.2 3.7 25 304-328 9-33 (115)
302 PF13870 DUF4201: Domain of un 67.9 87 0.0019 28.8 11.2 42 308-349 89-130 (177)
303 PF04012 PspA_IM30: PspA/IM30 67.9 44 0.00095 31.6 9.4 47 304-350 99-145 (221)
304 PF10828 DUF2570: Protein of u 67.8 68 0.0015 27.8 9.9 72 306-378 35-108 (110)
305 PF02403 Seryl_tRNA_N: Seryl-t 67.8 26 0.00057 29.5 7.2 27 322-348 72-98 (108)
306 PRK14148 heat shock protein Gr 67.8 11 0.00024 36.3 5.4 14 402-415 150-163 (195)
307 PF03962 Mnd1: Mnd1 family; I 67.7 64 0.0014 30.7 10.4 10 326-335 112-121 (188)
308 KOG3433 Protein involved in me 67.5 54 0.0012 32.0 9.8 61 286-346 99-159 (203)
309 PRK14140 heat shock protein Gr 67.5 21 0.00045 34.4 7.2 15 402-416 147-161 (191)
310 PF09766 FimP: Fms-interacting 67.4 28 0.0006 36.1 8.6 52 297-348 102-153 (355)
311 KOG1318 Helix loop helix trans 67.3 21 0.00046 38.1 7.9 36 300-335 287-322 (411)
312 TIGR03185 DNA_S_dndD DNA sulfu 67.1 57 0.0012 36.0 11.5 44 304-347 422-465 (650)
313 PF10146 zf-C4H2: Zinc finger- 67.0 20 0.00044 35.3 7.1 40 307-346 64-103 (230)
314 COG4238 Murein lipoprotein [Ce 67.0 33 0.00072 28.9 7.3 47 303-349 25-71 (78)
315 COG4372 Uncharacterized protei 67.0 59 0.0013 35.0 10.9 52 293-344 127-178 (499)
316 KOG2891 Surface glycoprotein [ 67.0 61 0.0013 33.7 10.6 19 294-312 353-371 (445)
317 KOG0249 LAR-interacting protei 66.9 48 0.001 38.1 10.7 43 303-345 216-258 (916)
318 COG2919 Septum formation initi 66.8 82 0.0018 27.7 10.3 28 274-301 13-40 (117)
319 PF05622 HOOK: HOOK protein; 66.8 1.9 4E-05 48.0 0.0 76 275-350 296-375 (713)
320 PF10146 zf-C4H2: Zinc finger- 66.6 1.3E+02 0.0028 29.7 12.6 48 304-351 54-101 (230)
321 PF12711 Kinesin-relat_1: Kine 66.3 35 0.00075 29.2 7.5 38 312-351 46-83 (86)
322 TIGR01554 major_cap_HK97 phage 66.2 33 0.00071 35.1 8.8 27 304-330 35-61 (378)
323 PF07047 OPA3: Optic atrophy 3 66.2 12 0.00026 33.6 5.0 37 295-331 97-133 (134)
324 PF09730 BicD: Microtubule-ass 66.2 32 0.00069 39.2 9.3 51 304-354 70-120 (717)
325 PF09738 DUF2051: Double stran 66.0 25 0.00053 36.1 7.8 46 306-351 115-160 (302)
326 PRK04863 mukB cell division pr 65.8 58 0.0013 40.1 12.0 16 366-381 432-447 (1486)
327 PF11365 DUF3166: Protein of u 65.6 26 0.00056 30.5 6.7 45 306-350 4-48 (96)
328 PF04999 FtsL: Cell division p 65.4 24 0.00052 29.3 6.4 30 320-349 38-67 (97)
329 KOG0483 Transcription factor H 65.4 8.9 0.00019 37.1 4.3 7 273-279 96-102 (198)
330 PF04012 PspA_IM30: PspA/IM30 65.3 79 0.0017 29.8 10.6 43 308-350 96-138 (221)
331 PF15236 CCDC66: Coiled-coil d 65.3 1.2E+02 0.0027 28.5 13.5 62 271-332 41-102 (157)
332 KOG4360 Uncharacterized coiled 65.0 23 0.00049 39.1 7.6 48 302-349 218-265 (596)
333 PF04340 DUF484: Protein of un 64.8 20 0.00043 34.2 6.6 14 318-331 72-85 (225)
334 PF04849 HAP1_N: HAP1 N-termin 64.7 57 0.0012 33.7 10.0 26 71-96 4-30 (306)
335 KOG2264 Exostosin EXT1L [Signa 64.7 65 0.0014 36.4 11.0 53 306-358 103-155 (907)
336 COG3879 Uncharacterized protei 64.6 30 0.00065 34.7 7.9 47 305-351 59-109 (247)
337 KOG4661 Hsp27-ERE-TATA-binding 64.5 50 0.0011 37.2 10.1 14 96-109 445-458 (940)
338 PF06103 DUF948: Bacterial pro 64.5 79 0.0017 25.9 9.6 31 305-335 35-65 (90)
339 PF04899 MbeD_MobD: MbeD/MobD 64.4 31 0.00068 28.3 6.6 34 306-339 31-64 (70)
340 PF10458 Val_tRNA-synt_C: Valy 64.4 63 0.0014 25.5 8.2 48 303-350 4-65 (66)
341 PF01486 K-box: K-box region; 64.4 34 0.00073 28.8 7.2 24 303-326 75-98 (100)
342 PF04949 Transcrip_act: Transc 64.4 84 0.0018 29.7 10.2 55 276-330 38-97 (159)
343 PRK13922 rod shape-determining 64.3 27 0.00058 34.2 7.5 36 302-337 68-106 (276)
344 PF11544 Spc42p: Spindle pole 64.3 53 0.0012 27.6 8.0 37 309-345 18-54 (76)
345 PF01920 Prefoldin_2: Prefoldi 64.2 21 0.00046 29.3 5.9 35 314-348 66-100 (106)
346 TIGR03689 pup_AAA proteasome A 64.1 14 0.0003 40.4 5.9 39 306-344 4-42 (512)
347 PRK14151 heat shock protein Gr 64.1 25 0.00054 33.3 6.9 15 402-416 131-145 (176)
348 KOG0288 WD40 repeat protein Ti 63.9 42 0.00092 36.2 9.2 25 312-336 50-74 (459)
349 KOG0999 Microtubule-associated 63.7 58 0.0012 36.6 10.3 37 310-346 170-209 (772)
350 PF05557 MAD: Mitotic checkpoi 63.7 29 0.00063 38.8 8.5 24 331-354 566-589 (722)
351 PF06810 Phage_GP20: Phage min 63.7 26 0.00056 32.4 6.8 37 298-334 29-68 (155)
352 PF08232 Striatin: Striatin fa 63.6 50 0.0011 29.8 8.5 44 308-351 16-59 (134)
353 KOG4673 Transcription factor T 63.6 31 0.00067 39.4 8.5 45 305-349 720-764 (961)
354 PRK03947 prefoldin subunit alp 63.6 34 0.00074 30.2 7.4 39 307-345 98-136 (140)
355 PRK14163 heat shock protein Gr 63.6 24 0.00053 34.6 6.9 11 402-412 143-153 (214)
356 PRK14147 heat shock protein Gr 63.5 25 0.00053 33.2 6.8 13 402-414 126-138 (172)
357 TIGR01730 RND_mfp RND family e 63.5 38 0.00083 32.6 8.3 35 317-351 102-136 (322)
358 PF03670 UPF0184: Uncharacteri 63.5 28 0.0006 29.7 6.3 41 303-343 33-73 (83)
359 KOG0971 Microtubule-associated 63.5 54 0.0012 38.6 10.4 30 320-349 328-357 (1243)
360 PF06210 DUF1003: Protein of u 63.4 37 0.00081 29.8 7.4 23 317-339 80-102 (108)
361 PF08606 Prp19: Prp19/Pso4-lik 63.4 44 0.00095 27.7 7.3 46 305-350 10-69 (70)
362 PF07798 DUF1640: Protein of u 63.4 1.3E+02 0.0028 28.0 11.7 16 330-345 79-94 (177)
363 TIGR01069 mutS2 MutS2 family p 63.3 77 0.0017 36.3 11.8 14 305-318 545-558 (771)
364 PRK14141 heat shock protein Gr 63.2 23 0.00049 34.6 6.6 37 371-415 124-160 (209)
365 PF07889 DUF1664: Protein of u 63.2 73 0.0016 28.9 9.4 46 303-348 68-113 (126)
366 PF06698 DUF1192: Protein of u 63.1 24 0.00052 28.2 5.6 26 305-330 23-48 (59)
367 KOG0250 DNA repair protein RAD 63.1 68 0.0015 38.2 11.3 26 285-310 699-724 (1074)
368 KOG0161 Myosin class II heavy 63.0 54 0.0012 41.3 11.1 64 287-350 1644-1707(1930)
369 COG1842 PspA Phage shock prote 62.8 1.4E+02 0.003 29.4 12.0 45 306-350 95-139 (225)
370 PF10168 Nup88: Nuclear pore c 62.5 88 0.0019 35.7 12.0 38 304-341 580-617 (717)
371 PRK06569 F0F1 ATP synthase sub 62.5 1.1E+02 0.0025 28.5 10.8 49 282-330 41-90 (155)
372 TIGR03185 DNA_S_dndD DNA sulfu 62.3 38 0.00081 37.4 8.9 10 306-315 212-221 (650)
373 KOG0995 Centromere-associated 62.2 44 0.00096 37.2 9.2 26 301-326 299-324 (581)
374 PF07407 Seadorna_VP6: Seadorn 62.2 24 0.00051 37.1 6.8 28 306-333 35-62 (420)
375 PF13863 DUF4200: Domain of un 62.2 1E+02 0.0022 26.4 12.6 8 371-378 110-117 (126)
376 PF05600 DUF773: Protein of un 62.2 34 0.00073 37.3 8.4 48 301-348 444-491 (507)
377 KOG0612 Rho-associated, coiled 62.0 67 0.0014 38.8 11.1 40 304-343 495-534 (1317)
378 PF12999 PRKCSH-like: Glucosid 62.0 63 0.0014 30.9 9.2 15 335-349 157-171 (176)
379 COG1340 Uncharacterized archae 61.9 1.1E+02 0.0025 31.4 11.6 46 305-350 36-81 (294)
380 PHA03161 hypothetical protein; 61.7 38 0.00083 31.7 7.5 58 291-350 44-101 (150)
381 PRK05431 seryl-tRNA synthetase 61.6 56 0.0012 34.6 9.7 27 322-348 71-97 (425)
382 PF15035 Rootletin: Ciliary ro 61.6 41 0.00089 32.0 7.9 36 301-336 72-114 (182)
383 PF05384 DegS: Sensor protein 61.5 73 0.0016 29.9 9.4 34 291-324 22-55 (159)
384 KOG2185 Predicted RNA-processi 61.4 34 0.00073 36.9 7.9 63 289-351 399-471 (486)
385 PRK09413 IS2 repressor TnpA; R 61.4 19 0.00041 31.3 5.3 27 322-348 76-102 (121)
386 PF07200 Mod_r: Modifier of ru 61.3 43 0.00094 29.8 7.7 50 286-336 39-88 (150)
387 PF15030 DUF4527: Protein of u 61.3 59 0.0013 33.0 9.2 72 277-348 10-82 (277)
388 KOG0243 Kinesin-like protein [ 61.2 77 0.0017 37.7 11.3 13 372-384 549-561 (1041)
389 PF05667 DUF812: Protein of un 61.1 53 0.0012 36.6 9.8 49 302-350 327-375 (594)
390 PF10482 CtIP_N: Tumour-suppre 61.0 47 0.001 30.0 7.6 50 301-350 12-61 (120)
391 PF05837 CENP-H: Centromere pr 60.9 28 0.0006 30.1 6.1 28 305-332 19-46 (106)
392 PF10779 XhlA: Haemolysin XhlA 60.8 60 0.0013 26.0 7.7 43 308-350 4-46 (71)
393 PRK14153 heat shock protein Gr 60.8 26 0.00056 33.8 6.5 13 402-414 143-155 (194)
394 PF03245 Phage_lysis: Bacterio 60.7 83 0.0018 28.0 9.3 52 299-350 10-61 (125)
395 KOG4674 Uncharacterized conser 60.7 69 0.0015 40.2 11.3 74 277-350 810-884 (1822)
396 PF15556 Zwint: ZW10 interacto 60.6 1.2E+02 0.0026 30.2 10.9 62 289-350 113-174 (252)
397 PF06810 Phage_GP20: Phage min 60.6 70 0.0015 29.6 9.1 39 303-341 27-68 (155)
398 PRK01156 chromosome segregatio 60.5 75 0.0016 36.2 11.1 6 373-378 768-773 (895)
399 PF06785 UPF0242: Uncharacteri 60.2 49 0.0011 34.9 8.7 65 286-350 79-153 (401)
400 COG3352 FlaC Putative archaeal 60.0 41 0.00089 31.7 7.4 47 303-349 79-126 (157)
401 KOG4010 Coiled-coil protein TP 60.0 27 0.00058 34.0 6.4 32 307-338 48-79 (208)
402 KOG0978 E3 ubiquitin ligase in 59.9 57 0.0012 37.2 9.8 64 291-354 561-624 (698)
403 PF07200 Mod_r: Modifier of ru 59.9 89 0.0019 27.8 9.4 49 291-339 36-84 (150)
404 PRK09343 prefoldin subunit bet 59.8 47 0.001 29.3 7.5 31 320-350 74-104 (121)
405 PF10168 Nup88: Nuclear pore c 59.8 93 0.002 35.5 11.6 38 312-349 581-618 (717)
406 PF11544 Spc42p: Spindle pole 59.6 61 0.0013 27.3 7.6 47 306-352 8-54 (76)
407 PF06216 RTBV_P46: Rice tungro 59.6 24 0.00051 36.0 6.2 48 288-338 66-113 (389)
408 PF02646 RmuC: RmuC family; I 59.6 28 0.0006 35.1 6.8 39 322-360 36-78 (304)
409 PF03961 DUF342: Protein of un 59.5 58 0.0012 34.4 9.4 61 291-351 329-402 (451)
410 KOG4797 Transcriptional regula 59.4 19 0.00041 32.3 4.9 28 303-330 67-94 (123)
411 PF00769 ERM: Ezrin/radixin/mo 59.2 90 0.002 30.8 10.1 37 315-351 80-116 (246)
412 TIGR01242 26Sp45 26S proteasom 59.2 21 0.00045 36.2 5.9 37 308-351 4-40 (364)
413 PF05812 Herpes_BLRF2: Herpesv 59.1 14 0.00031 33.2 4.1 25 326-350 5-29 (118)
414 KOG0239 Kinesin (KAR3 subfamil 59.1 58 0.0013 36.8 9.7 32 305-336 243-274 (670)
415 PF03194 LUC7: LUC7 N_terminus 59.0 68 0.0015 31.9 9.3 11 371-381 196-206 (254)
416 PF09728 Taxilin: Myosin-like 58.8 1.2E+02 0.0026 31.0 11.2 70 281-350 49-147 (309)
417 PF10481 CENP-F_N: Cenp-F N-te 58.8 70 0.0015 32.9 9.3 70 279-348 15-91 (307)
418 cd07666 BAR_SNX7 The Bin/Amphi 58.6 37 0.0008 33.8 7.3 54 295-351 155-208 (243)
419 PF14282 FlxA: FlxA-like prote 58.6 45 0.00097 28.8 7.0 47 305-351 21-71 (106)
420 PF09403 FadA: Adhesion protei 58.3 1.5E+02 0.0031 27.0 11.4 63 284-348 35-106 (126)
421 PF15397 DUF4618: Domain of un 58.3 79 0.0017 31.9 9.6 36 295-330 73-108 (258)
422 KOG0996 Structural maintenance 58.2 84 0.0018 37.9 11.0 51 299-349 538-588 (1293)
423 PF08581 Tup_N: Tup N-terminal 58.2 74 0.0016 26.7 7.9 46 302-347 24-73 (79)
424 PF09727 CortBP2: Cortactin-bi 58.0 91 0.002 30.3 9.6 65 283-349 95-173 (192)
425 PF05483 SCP-1: Synaptonemal c 57.9 44 0.00096 38.1 8.4 74 306-379 604-678 (786)
426 cd00632 Prefoldin_beta Prefold 57.8 53 0.0011 27.9 7.3 37 314-350 67-103 (105)
427 TIGR01242 26Sp45 26S proteasom 57.8 17 0.00037 36.8 5.0 32 303-334 6-37 (364)
428 COG2919 Septum formation initi 57.6 1.3E+02 0.0029 26.3 11.3 41 313-353 46-86 (117)
429 KOG0996 Structural maintenance 57.6 67 0.0015 38.7 10.1 26 302-327 404-429 (1293)
430 PF07334 IFP_35_N: Interferon- 57.6 20 0.00044 30.0 4.5 17 314-330 4-20 (76)
431 KOG0243 Kinesin-like protein [ 57.5 71 0.0015 38.0 10.3 7 157-163 260-266 (1041)
432 PRK14144 heat shock protein Gr 57.4 43 0.00093 32.5 7.4 14 402-415 154-167 (199)
433 PF12777 MT: Microtubule-bindi 57.4 28 0.00061 35.5 6.5 57 295-351 220-276 (344)
434 PRK10963 hypothetical protein; 57.2 31 0.00066 33.3 6.4 28 306-333 54-84 (223)
435 PF06428 Sec2p: GDP/GTP exchan 57.2 64 0.0014 28.1 7.7 25 327-351 40-64 (100)
436 KOG4010 Coiled-coil protein TP 57.2 53 0.0012 32.0 7.8 26 305-330 53-78 (208)
437 PF06216 RTBV_P46: Rice tungro 57.1 58 0.0013 33.4 8.4 52 303-354 64-115 (389)
438 PF08781 DP: Transcription fac 57.1 51 0.0011 30.6 7.4 46 276-338 1-46 (142)
439 PLN02320 seryl-tRNA synthetase 57.0 26 0.00056 38.3 6.5 53 286-338 113-165 (502)
440 KOG0239 Kinesin (KAR3 subfamil 57.0 1.1E+02 0.0024 34.6 11.5 13 338-350 300-312 (670)
441 PF10205 KLRAQ: Predicted coil 56.9 75 0.0016 28.1 8.1 30 304-333 41-70 (102)
442 KOG0837 Transcriptional activa 56.9 55 0.0012 33.4 8.2 31 320-350 230-260 (279)
443 PF07246 Phlebovirus_NSM: Phle 56.8 60 0.0013 33.0 8.5 13 336-348 214-226 (264)
444 TIGR00606 rad50 rad50. This fa 56.7 63 0.0014 38.8 10.1 44 304-347 882-925 (1311)
445 KOG2893 Zn finger protein [Gen 56.5 40 0.00086 34.3 7.1 21 86-106 182-202 (341)
446 PF11853 DUF3373: Protein of u 56.4 10 0.00023 41.2 3.3 23 304-326 32-54 (489)
447 PF07889 DUF1664: Protein of u 56.4 1.4E+02 0.003 27.2 9.9 65 281-351 59-123 (126)
448 PF12128 DUF3584: Protein of u 56.3 96 0.0021 37.1 11.4 56 292-347 479-534 (1201)
449 KOG3647 Predicted coiled-coil 56.3 83 0.0018 32.5 9.4 107 299-407 143-256 (338)
450 PF15186 TEX13: Testis-express 56.1 1.1E+02 0.0024 28.8 9.5 55 294-348 76-134 (152)
451 TIGR01628 PABP-1234 polyadenyl 56.1 33 0.00071 36.7 7.0 21 46-66 398-418 (562)
452 PF00261 Tropomyosin: Tropomyo 56.0 76 0.0016 30.7 8.9 59 294-352 104-162 (237)
453 KOG0946 ER-Golgi vesicle-tethe 56.0 37 0.0008 39.4 7.5 48 303-350 650-697 (970)
454 KOG3091 Nuclear pore complex, 55.9 1E+02 0.0022 34.0 10.5 19 58-76 47-65 (508)
455 TIGR02338 gimC_beta prefoldin, 55.9 55 0.0012 28.1 7.1 24 325-348 75-98 (110)
456 PF05008 V-SNARE: Vesicle tran 55.9 79 0.0017 25.1 7.6 46 303-348 32-78 (79)
457 KOG2077 JNK/SAPK-associated pr 55.9 32 0.0007 38.6 6.9 48 303-350 329-376 (832)
458 KOG4643 Uncharacterized coiled 55.8 84 0.0018 37.4 10.4 69 283-351 374-442 (1195)
459 PRK13454 F0F1 ATP synthase sub 55.8 1.8E+02 0.0039 27.2 11.3 45 282-326 62-106 (181)
460 KOG0964 Structural maintenance 55.7 75 0.0016 37.8 9.9 57 294-350 409-465 (1200)
461 cd00632 Prefoldin_beta Prefold 55.7 52 0.0011 27.9 6.9 36 306-341 66-101 (105)
462 PRK14145 heat shock protein Gr 55.5 54 0.0012 31.8 7.7 13 402-414 152-164 (196)
463 PF04999 FtsL: Cell division p 55.4 39 0.00085 28.0 6.0 26 305-330 44-69 (97)
464 PHA03155 hypothetical protein; 55.4 15 0.00034 32.9 3.7 24 326-349 10-33 (115)
465 KOG0483 Transcription factor H 55.4 20 0.00043 34.7 4.8 29 321-349 116-144 (198)
466 COG1792 MreC Cell shape-determ 55.4 35 0.00075 34.4 6.6 24 304-327 84-107 (284)
467 COG1382 GimC Prefoldin, chaper 55.2 33 0.00072 30.9 5.8 35 314-348 74-108 (119)
468 PF12128 DUF3584: Protein of u 55.2 73 0.0016 38.0 10.2 10 274-283 598-607 (1201)
469 PF05837 CENP-H: Centromere pr 55.1 1.4E+02 0.003 25.8 9.8 52 302-354 37-88 (106)
470 PF14362 DUF4407: Domain of un 55.1 1.7E+02 0.0038 28.9 11.5 29 302-330 134-162 (301)
471 PRK09973 putative outer membra 55.0 70 0.0015 27.4 7.4 46 304-349 25-70 (85)
472 PHA03162 hypothetical protein; 54.8 16 0.00036 33.5 3.8 25 326-350 15-39 (135)
473 PF13879 KIAA1430: KIAA1430 ho 54.7 68 0.0015 26.2 7.3 39 310-348 36-97 (98)
474 PF15619 Lebercilin: Ciliary p 54.6 2E+02 0.0044 27.6 11.5 71 277-347 69-148 (194)
475 PRK14160 heat shock protein Gr 54.5 37 0.00081 33.2 6.5 11 402-412 167-177 (211)
476 TIGR00414 serS seryl-tRNA synt 54.3 56 0.0012 34.5 8.3 61 279-339 43-105 (418)
477 PF01025 GrpE: GrpE; InterPro 54.2 11 0.00023 34.0 2.6 64 302-380 10-73 (165)
478 PF02388 FemAB: FemAB family; 54.2 57 0.0012 34.1 8.2 48 302-349 241-298 (406)
479 KOG4672 Uncharacterized conser 54.1 24 0.00052 38.0 5.5 77 268-360 66-142 (487)
480 PRK05431 seryl-tRNA synthetase 54.0 70 0.0015 33.9 9.0 69 282-350 35-106 (425)
481 PF03961 DUF342: Protein of un 54.0 65 0.0014 34.0 8.7 77 274-350 332-408 (451)
482 cd00890 Prefoldin Prefoldin is 54.0 60 0.0013 27.6 7.1 43 301-343 85-127 (129)
483 PF10234 Cluap1: Clusterin-ass 53.8 1.8E+02 0.0039 29.6 11.3 76 275-350 140-237 (267)
484 PHA02109 hypothetical protein 53.7 36 0.00079 33.0 6.1 39 301-339 191-229 (233)
485 PF09831 DUF2058: Uncharacteri 53.7 75 0.0016 30.4 8.2 85 275-361 11-96 (177)
486 PF09728 Taxilin: Myosin-like 53.6 2E+02 0.0043 29.5 11.7 73 278-350 25-97 (309)
487 PRK14143 heat shock protein Gr 53.6 35 0.00075 33.9 6.2 44 306-349 63-106 (238)
488 PF14073 Cep57_CLD: Centrosome 53.6 2.2E+02 0.0047 27.5 11.3 76 278-353 77-170 (178)
489 PRK12705 hypothetical protein; 53.6 1.8E+02 0.0038 32.1 12.0 76 276-351 43-122 (508)
490 PF15136 UPF0449: Uncharacteri 53.6 67 0.0015 28.1 7.2 48 303-350 50-97 (97)
491 PF15456 Uds1: Up-regulated Du 53.3 1.7E+02 0.0037 26.3 11.4 73 275-347 21-111 (124)
492 COG4985 ABC-type phosphate tra 53.3 35 0.00075 34.5 6.1 51 278-328 196-246 (289)
493 PRK14474 F0F1 ATP synthase sub 53.2 2E+02 0.0043 28.4 11.4 69 281-349 35-108 (250)
494 PF13094 CENP-Q: CENP-Q, a CEN 53.2 53 0.0011 29.8 6.9 46 302-347 40-85 (160)
495 PF00261 Tropomyosin: Tropomyo 53.1 2.2E+02 0.0048 27.5 11.8 71 281-351 147-217 (237)
496 PF02994 Transposase_22: L1 tr 53.0 42 0.0009 35.0 7.0 55 297-351 131-185 (370)
497 KOG1103 Predicted coiled-coil 53.0 78 0.0017 33.8 8.9 66 281-349 113-178 (561)
498 KOG0993 Rab5 GTPase effector R 52.9 74 0.0016 34.5 8.7 72 273-351 111-182 (542)
499 PRK14157 heat shock protein Gr 52.9 48 0.001 32.9 7.0 60 306-380 80-139 (227)
500 KOG4593 Mitotic checkpoint pro 52.8 96 0.0021 35.5 10.0 69 288-356 483-584 (716)
No 1
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=5.5e-72 Score=518.00 Aligned_cols=179 Identities=60% Similarity=1.043 Sum_probs=168.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC--c
Q 014660 1 MGNNEDGKSFKSEKPSSPPPSDQGNIHMYTDWAAMQAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAP--Y 78 (421)
Q Consensus 1 MG~~e~~~~~K~~K~ss~~~~~q~~~~~yPDWs~mQAYygp~~~~pp~f~s~vas~p~phPYMWG~~qpmmpPYGtP--Y 78 (421)
||++|++|++|++|++++++++|+++|+||||++||||||+| ++|+||+++||++|+|||||||+||||||||||| |
T Consensus 1 MG~~E~~~~~k~~k~~s~~~~~~~~~~~ypDWs~mQAYyg~~-~~p~~f~s~va~sp~phPYMWG~~q~mmPPYGtP~pY 79 (189)
T PF07777_consen 1 MGSSEEGKPSKSSKPSSPPPEDQPTPHVYPDWSAMQAYYGPG-APPPYFNSAVASSPQPHPYMWGPQQPMMPPYGTPVPY 79 (189)
T ss_pred CCCccCCcCCCCCCCCCCCcCCCCCCccCCccHhhhhccCCC-CCCcccCcccCCCCCCCCcccCCCccccCCCCCCCCC
Confidence 999999999999999887655899999999999999999999 8889999999999999999999999999999997 9
Q ss_pred ccccCCCcccCCCCCCCCCCCCCCCCCCCCC--CCCCCCcCC-CCCCCCCcccchhhhccccC-CcccccCCCCCCCCCC
Q 014660 79 AAIYSTGGVYAHPAVPLGSHAHNHGVPTSPA--AVTPLNTEA-PTKSSGNADRGLAKKLKGLD-GLAMSIGNASAESAEG 154 (421)
Q Consensus 79 ~a~Yp~GgvYaHP~~p~g~~p~~~~~~~sp~--~~tp~s~e~-~~Kss~~kd~~~~Kk~Kg~~-Gl~m~~g~~~~~~~~~ 154 (421)
+||||||||||||+||+|+|||++++++++. ++||+++|+ ++|++++|||+++||||||| ||+|++||++.+++++
T Consensus 80 ~A~YphGgvYAHP~mp~~s~p~~~~~~~s~~~~~~tp~s~E~~p~Kss~~kd~~~~KksKg~~g~~a~s~~n~~~gk~~~ 159 (189)
T PF07777_consen 80 PAMYPHGGVYAHPSMPPGSHPFSPYAMPSPETPAATPLSTETDPGKSSGNKDKGSMKKSKGFDGGLAMSIKNGESGKTSG 159 (189)
T ss_pred ccccCCCccccCCCCCcccccCCCcccccccccCCCCcccccccccCcCccccccccccccccccceeeccCCccCcccc
Confidence 9999999999999999999999999999854 478999999 69999999999999999999 6999999999999988
Q ss_pred C-CCCCCCCc---CCCCCCCCCCCCCcccc
Q 014660 155 G-AEQRPSQS---EADGSTDGSDGNTVRAG 180 (421)
Q Consensus 155 ~-~~~~~SqS---~segsSdgsd~ns~~~~ 180 (421)
+ +|++.||| .+||||||||+|+++++
T Consensus 160 ~s~n~~~Sqs~eSgsegSSdgSD~Nt~~~~ 189 (189)
T PF07777_consen 160 SSANDGSSQSSESGSEGSSDGSDGNTNNDS 189 (189)
T ss_pred CCCCCccCccccccccccccCcCccccCCC
Confidence 5 68899996 47999999999999864
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.47 E-value=2.9e-13 Score=105.45 Aligned_cols=64 Identities=52% Similarity=0.702 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (421)
Q Consensus 278 ErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~ 341 (421)
|++.|+++|+++||+||++||.||++++++|+.+|..|+.+|..|+.++..|..++..|..+|.
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4667899999999999999999999999999999999999999999999999999999988873
No 3
>smart00338 BRLZ basic region leucin zipper.
Probab=99.41 E-value=1.2e-12 Score=102.15 Aligned_cols=61 Identities=56% Similarity=0.732 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340 (421)
Q Consensus 280 E~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN 340 (421)
+.|+.||+++||+||++||.||++|+++|+.+|..|+.+|..|+.++..|+.++..|..++
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4588999999999999999999999999999999999999999999999998666666554
No 4
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.28 E-value=4.7e-12 Score=125.05 Aligned_cols=64 Identities=33% Similarity=0.326 Sum_probs=59.1
Q ss_pred chhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 272 ETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335 (421)
Q Consensus 272 e~~~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~ 335 (421)
..-..||.-+||+-|+++|||+||+||+|||+|+.+||.||..|+.+|..|-+||..|++.|..
T Consensus 281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 3446799999999999999999999999999999999999999999999999999999987653
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.21 E-value=2.1e-11 Score=128.00 Aligned_cols=71 Identities=34% Similarity=0.388 Sum_probs=67.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
..|.+.+||+.|||+|||||..||+|||+|++.||.++..|.+||+.|+.|...|++++..|+.||..||-
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 35889999999999999999999999999999999999999999999999999999999999999998874
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.21 E-value=1.8e-11 Score=126.97 Aligned_cols=74 Identities=30% Similarity=0.392 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 276 qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
-+|+.+||.||||+|++||+.||+|||+|++.||.||....+||++|++++.+|..++..|..+.+.|...+.+
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999999999999999999999999999999999999888888888888777765
No 7
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.16 E-value=1.7e-10 Score=111.67 Aligned_cols=71 Identities=35% Similarity=0.420 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 280 E~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
|+|-+|||++||++|+.+|.|||+++++|+.++.+|+.||..|+.|...|++..+.|..+|..|..+|..+
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999998888743
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.10 E-value=5.6e-10 Score=84.81 Aligned_cols=50 Identities=54% Similarity=0.738 Sum_probs=46.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
.++.||+ +||+||++||.||++++++|+.+|..|+.+|..|..++..|+.
T Consensus 4 ~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 4 EKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777 9999999999999999999999999999999999999998875
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.42 E-value=9.6e-07 Score=86.83 Aligned_cols=68 Identities=34% Similarity=0.470 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++++..+|-+|.+++|||+|.+||.||-+++.+||.+|..|..+|..|-.++..|++ ...+|++++..
T Consensus 199 ~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~-------~v~e~k~~V~~ 266 (279)
T KOG0837|consen 199 MEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE-------QVAELKQKVME 266 (279)
T ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHH
Confidence 456777788888999999999999999999999999999999999999999998887 44455555543
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.41 E-value=4.1e-09 Score=88.01 Aligned_cols=68 Identities=31% Similarity=0.489 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 276 qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
.+..++|..||+.+||.+|++||.||.+++++|+.++..|+.+...|..++..+..++..+...+..|
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~~L 91 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLEQL 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677899999999999999999999999999999999998888888888888777665555544444
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.98 E-value=2.5e-05 Score=77.02 Aligned_cols=57 Identities=30% Similarity=0.520 Sum_probs=48.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 285 RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.|+.+|-++|||||.++|...+++..||..|++||..|+.++.+|+. |+..|+.-+.
T Consensus 197 err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~-------el~~~~~~~~ 253 (269)
T KOG3119|consen 197 ERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKK-------ELATLRRLFL 253 (269)
T ss_pred HHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 35556999999999999999999999999999999999999999987 5555555444
No 12
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.71 E-value=0.00022 Score=71.44 Aligned_cols=52 Identities=33% Similarity=0.486 Sum_probs=44.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 285 RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
|.++.|..+|-|=|.||+++.|.|+.+++.|+.+|.+|+.++..|..+++.|
T Consensus 230 rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 230 RKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667789999999999999999999999999999999998888744443
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.67 E-value=0.00042 Score=62.44 Aligned_cols=69 Identities=28% Similarity=0.440 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 276 qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++-..+|..||-++||=.|+-||-|+-..-++||.+.. .|+.+|..|++++.++..|...|+.+...++
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~-------~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKA-------ELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999887776665555 5555555555555556667777777777665
No 14
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.21 E-value=0.00063 Score=73.83 Aligned_cols=66 Identities=24% Similarity=0.337 Sum_probs=55.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
|-.||+=+||.||++||+||-.-|..||..|+.|+.|-.+|.+|-..+...+..+..+...|-.++
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999998888888777776666666666665554
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.68 E-value=0.023 Score=54.60 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 278 ERELKRERRKQSN-RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 278 ErE~KR~RRk~sN-RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
|+++...+-++.| +..........++.+++++..+..|+++|+.|++++..++.+.+.|+.+|..|+..+..
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 22223333344555667777777788888888888888888888888888888877654
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.44 E-value=0.014 Score=50.81 Aligned_cols=50 Identities=28% Similarity=0.487 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
..+.+|++++..|-.+...|+..+..|.+++..|+.||..||++|..+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999987754
No 17
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.02 E-value=0.032 Score=49.09 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
..+..|++++..|-.+...|+..+..|.+++..|+.||.-||++|..++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999999999999999763
No 18
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.77 E-value=0.066 Score=43.76 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.++.||.+|..+-..+..|+.++..|++++..|..+|..|+.+...+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45666666666555555555555555555555555555555444443
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.74 E-value=0.045 Score=51.12 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=47.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELS---RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE---~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+++-++.++.|++++|....-+=.-=-..|..|. .....|..||..|+.++..|++++..|+.||..|..++..++
T Consensus 59 Y~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 59 YEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666676665422211111122333333 246677778888888888888888888888888888877655
No 20
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=95.50 E-value=0.084 Score=44.15 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
-++|..++..|+.....|..++..++++|.+|+.||..|..=|.++
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999999999999999887
No 21
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.18 E-value=0.091 Score=56.23 Aligned_cols=48 Identities=29% Similarity=0.374 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
|+.+++||++++.|++|.+.|.++...+++++++|+.||..|+++++.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 447899999999999999999999999999999999999999999954
No 22
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.09 E-value=0.082 Score=43.66 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.-+.-|+-+++.|+.+|..|..+...++...+.|+.||.+|+++-..-|
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999999999998876543
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.98 E-value=0.36 Score=46.46 Aligned_cols=60 Identities=17% Similarity=0.023 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014660 296 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNK 355 (421)
Q Consensus 296 RSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~ 355 (421)
.-+..-+++..+|+++++.++.+...|..++++|++++..+..|+..|+.++..++....
T Consensus 111 ~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 111 NIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444577778888888888888888888888888888888888888888877764443
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.86 E-value=0.13 Score=41.50 Aligned_cols=46 Identities=35% Similarity=0.424 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+..|+.+|+.|=.....|+.+...|+++...+..|+..|.++...+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555443
No 25
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=94.58 E-value=0.67 Score=39.20 Aligned_cols=74 Identities=24% Similarity=0.355 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 277 dErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
-|.-++|..+++.+=|++-..|.-+.....+|+.++..|......|-.+|.....+|.+|+.-|..+..+|..+
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999899888888888888999999999999999999999999999999999999999999754
No 26
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.45 E-value=0.13 Score=45.45 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
..+.+|++++.+|-++...|++.+..|-+++..|+.||..||++|..
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45788999999999999999999999999999999999999999986
No 27
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.31 E-value=0.31 Score=39.89 Aligned_cols=45 Identities=33% Similarity=0.458 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.+.-|+.+++.|+.+|..|..+...|++++.+|+.|-.....+|.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554455554444444444444444443
No 28
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.31 E-value=0.3 Score=39.53 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+.++.|=..++.|+.||..|+.++..++.+...|...|..=+.+|..
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999998888865
No 29
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.21 E-value=0.27 Score=48.66 Aligned_cols=53 Identities=28% Similarity=0.376 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 298 RlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++--+..++++..+.+.|..+|..|..+++.+++++..|+-||++|.++++.+
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445556667777777777777777777788888888888888888877653
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.21 E-value=0.42 Score=53.48 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
|-+..|..+|+.|...|+.++....+++..|+.|.+.|+..
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888888888777777777666654
No 31
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=94.13 E-value=0.0022 Score=66.39 Aligned_cols=62 Identities=31% Similarity=0.429 Sum_probs=53.8
Q ss_pred hhhhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 014660 275 IQNERELKRERRKQSNRESARR---SRLRKQAEAEELSRKVDSLI-DENASLKSEINQLSENSEKL 336 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARR---SRlRKqa~leeLE~rVe~L~-~EN~~L~~el~~L~e~~~~L 336 (421)
+-.|.+.||.+|+++|+.+|.+ ||-|++....+|+.+|+.|+ .++..|..+|..|+.+.+.|
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l 212 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHL 212 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHH
Confidence 3467788899999999999999 99999999999999999999 99988888888887644433
No 32
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.04 E-value=0.27 Score=41.17 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
..+.=|+-+++.|+.+|..|..++..++.....|+.||..|+++...-+
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4456677889999999999999999988888889999999998887654
No 33
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=93.91 E-value=0.61 Score=46.48 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.++.+|+++-+.|..||+.|+.....|-.+..+|..+...|+++|.++
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 356789999999999999999999999999999999999999988876
No 34
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.88 E-value=1 Score=42.27 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=51.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++.++....+..-+.-......++.++..-++.|..|...|.-++..+.+++.+|+.||..|-+++...
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556667777778888888888888888888888899999999999998887643
No 35
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.75 E-value=1.2 Score=40.85 Aligned_cols=67 Identities=25% Similarity=0.304 Sum_probs=53.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 285 RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
...+.|++.+-+--.-++++|+.|+.++..|..+...|..++..|+++...|..+....+.++..+.
T Consensus 34 e~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 34 EMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778777788888888888888888888888888888888888888878777777777765
No 36
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.64 E-value=1.1 Score=40.06 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=46.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.+..|-...||.......++...++.|+..++.|+.++..+..++..+..+...|..++..+...++.
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555677777777777777777777777777777777777777776666666666655555544
No 37
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=93.54 E-value=0.38 Score=38.61 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+++++||.++..++.-...|-..+.+...++..|+.+...|+++|..++
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999998876
No 38
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.36 E-value=0.26 Score=37.00 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 315 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 315 L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
|+.+-..|+.....|..++..|..||..|+.++..+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555555544
No 39
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.12 E-value=0.77 Score=44.51 Aligned_cols=45 Identities=24% Similarity=0.220 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+|..+++.|+.|...|...+..++.....++.+...|.+++.++
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 40
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=93.11 E-value=0.21 Score=49.87 Aligned_cols=40 Identities=38% Similarity=0.443 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 014660 311 KVDSLIDENASLKSEINQLSENSE----KLRQENAALLEKLKSA 350 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~e~~~----~L~~EN~~LkekL~~l 350 (421)
.+.+|.+||.+|++|+..|++++. .|+.||++||+.|.-.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 455677777777777766644433 4889999999988743
No 41
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=92.78 E-value=0.17 Score=47.56 Aligned_cols=42 Identities=33% Similarity=0.546 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
|+++|.++++--++|.-|..||. +-+.|+.++++||.+|.+|
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888773 3344444455555544444
No 42
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.53 E-value=1.6 Score=41.84 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.+.++++++.+++.|+.+...++.++...++++.+++.++...+..|
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433
No 43
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=92.41 E-value=0.8 Score=44.74 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.+.+++..+.+++.++.++..|+++.+.+..++.+|..|++.|++++.
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 344555555666666667777777777777888888888888887775
No 44
>PRK11637 AmiB activator; Provisional
Probab=92.36 E-value=1.7 Score=45.27 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
....-+.+++.|+.++..++.+...+..+|..+..++..|+.+...|+.+|...
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666666666666666666666666666666666666666666544
No 45
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=92.36 E-value=0.58 Score=40.94 Aligned_cols=45 Identities=27% Similarity=0.333 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+|=.++..|++....|..++..|+..+..|..||..|+-+...++
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999999999999999998886
No 46
>PRK00295 hypothetical protein; Provisional
Probab=92.35 E-value=0.99 Score=36.39 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+++++||.++..++.-...|-..+.+.+.++..|+.+.+.|..+|+.+.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999999999999998765
No 47
>PRK04325 hypothetical protein; Provisional
Probab=92.30 E-value=0.95 Score=37.05 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+++++||.++..++.-...|-..|.+-+.++..|+.+.+.|..+|+.++
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3489999999999999999999999999999999999999999998765
No 48
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.24 E-value=0.5 Score=35.48 Aligned_cols=42 Identities=43% Similarity=0.552 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.||...+.|++.-..|..+...|..+...|+.|...|+.+|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 366777777777777777777777777777788888888775
No 49
>PRK00736 hypothetical protein; Provisional
Probab=92.18 E-value=1 Score=36.26 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+++++||.++..++.-...|-..+.+-..++..|..+.+.|.++|+..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999999999999999999999999998765
No 50
>PRK02119 hypothetical protein; Provisional
Probab=92.17 E-value=0.94 Score=37.04 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+++.+||.++..++.-...|-..+.+-+.++..|+.+.+.|+++|+.++
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45778888888888888888888888888888888888899988888765
No 51
>PRK02793 phi X174 lysis protein; Provisional
Probab=92.11 E-value=0.97 Score=36.80 Aligned_cols=51 Identities=25% Similarity=0.212 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
.+++.+||.++..++.-...|-+.+.+.+.++..|..+.+.|..+|+.++.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357888999999988888889888888888889999999999998887653
No 52
>PRK11637 AmiB activator; Provisional
Probab=91.88 E-value=1.8 Score=45.05 Aligned_cols=53 Identities=8% Similarity=0.131 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
...+.++.+++.+++.|..+...+..+|..++.++..+..+...|..+|..++
T Consensus 64 ~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 64 RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555666666666666666666666666666666666665543
No 53
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=91.78 E-value=1.1 Score=43.76 Aligned_cols=40 Identities=35% Similarity=0.393 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 014660 311 KVDSLIDENASLKSEINQLSENSE---KLRQENAALLEKLKSA 350 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~e~~~---~L~~EN~~LkekL~~l 350 (421)
....|.+||..|++|+..|+.+.. .|+.||.+||+.|...
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344555555555555555554444 6789999999988643
No 54
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.76 E-value=0.23 Score=47.22 Aligned_cols=42 Identities=31% Similarity=0.401 Sum_probs=28.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 283 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
|++|+++++ -+..+.++++|+.+++.|+.+..+|++.+..|.
T Consensus 92 R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 92 RQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred Hhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667776666 355667788888888888876555555555554
No 55
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.75 E-value=1.2 Score=47.55 Aligned_cols=50 Identities=28% Similarity=0.355 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
|--+.|.|+.++.+|+.||.+||..+.+|+..|++|..+-+.+-++|..+
T Consensus 295 asle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~l 344 (502)
T KOG0982|consen 295 ASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEAL 344 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 44566788899999999999999999999999998887765555555543
No 56
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.68 E-value=2.7 Score=37.65 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=37.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+.+|+...-+.......|=+..+++++.++..++.+-..|..++..+...+..+..|.+.|+..++..
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444444444444444555555555555555555555555555555555555555555555544
No 57
>PRK04406 hypothetical protein; Provisional
Probab=91.60 E-value=1.2 Score=36.57 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+++++||.++..++.-...|-+.+.+.+.++..|+.+.+.|+++|..++
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678888888888888888888888888888888888888888887655
No 58
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.36 E-value=1 Score=41.11 Aligned_cols=52 Identities=40% Similarity=0.420 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEI--NQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el--~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
-++++.+|+.++..|+.|...|...+ ..|......|+.|+..|..+|..++.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777777777665 57788888999999999999988875
No 59
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.12 E-value=1.1 Score=40.76 Aligned_cols=49 Identities=41% Similarity=0.498 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+...+.|+.++..|+.++..+..+|..|+.++..|+.+...|.++|..+
T Consensus 13 ~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 13 QDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777777777777777777654
No 60
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.09 E-value=0.86 Score=39.48 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
.+.++++++++++++.|+++|..|+.++..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 345667788888888888888888888888875
No 61
>smart00338 BRLZ basic region leucin zipper.
Probab=90.99 E-value=2.2 Score=33.20 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
=...+..|+.+...|..++..|..++..|+.|+..|+.++.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567778888888888888888888888888888877663
No 62
>PRK00846 hypothetical protein; Provisional
Probab=90.77 E-value=1.7 Score=36.27 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+++++||.++...+.-...|-..+.+....+..|..+.+.|+++|+.++
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888888888888888888888888889999999999999998876
No 63
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.69 E-value=4.1 Score=39.55 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 296 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 296 RSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
..+..-+++++.|+.+++.|+..|..|...+..+++++.+|..+...+..-...+
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677788888888888888888888888888888877777766655543
No 64
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=90.51 E-value=0.92 Score=41.37 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+|..+...|.+++++|..||..|+.++..+.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777776666544
No 65
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=90.43 E-value=0.94 Score=48.70 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 316 IDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 316 ~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
..+..+|.++.++|+++..+|......|..+|..
T Consensus 108 ~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 108 QSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555556555543
No 66
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.38 E-value=1.6 Score=36.17 Aligned_cols=51 Identities=29% Similarity=0.380 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
==|-++++|..+-..|..|-+.++.....|+.++++|..|.+.-.++|..+
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888888888888888887777777653
No 67
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.13 E-value=8.7 Score=40.18 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
-+++.+.|.++-+.|..-.++|+.++++|+++...|......|+.+..+
T Consensus 230 ~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 230 LQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3445555555555566666666666666666666666666677766665
No 68
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=90.13 E-value=1.3 Score=39.09 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
.+|=.++..|++....|..++..|+..+..|..||..|+-+-..|+.
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~ 50 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRE 50 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778889999999999999999999999999999999998888763
No 69
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=89.59 E-value=4.1 Score=31.72 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
..+..|+.+...|..++..|..++..|..++..|+.+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555555555555555555555444
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.43 E-value=2.8 Score=47.82 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014660 331 ENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 331 e~~~~L~~EN~~LkekL~~ 349 (421)
.+...|..|...|..+++.
T Consensus 437 ak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 71
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=89.32 E-value=1.6 Score=43.24 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.|||+++..+.+++..|+.|+ ..|+.+|-.|-+++.=+|
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev-------~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREV-------ESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 566666665555555555555 455568888888887665
No 72
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=89.29 E-value=1.4 Score=43.52 Aligned_cols=49 Identities=33% Similarity=0.451 Sum_probs=33.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
.|.|=|++|.|==.+-| +-++.+..|+.+++.|+++|-.|-+++.-|+.
T Consensus 87 QRDRFR~Rn~ELE~elr-~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELR-KQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445655444443 23456788888888888888888888887765
No 73
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.24 E-value=2.2 Score=35.88 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
|-++++|..+-..|..++..++..-..|.+++.+|+.|...-.++|.
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555444444443
No 74
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=88.81 E-value=0.53 Score=37.54 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 317 DENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 317 ~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.|...|+.+|..|.+++.+|+.||..||....-
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 455667777888888888888899999987643
No 75
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=88.71 E-value=3.9 Score=32.40 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.+++|...|..|..+...|..++..|+........|-.+-.++|.++
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356777777777777777777777777777777776766666666543
No 76
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.62 E-value=2 Score=42.76 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
++|..+++.+..||..|++++.+|+.+++.+..+...|+.++
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443333333333
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.60 E-value=5.2 Score=43.99 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~ 327 (421)
.....+....-+.+++.|+..+...+.++..|..+..
T Consensus 159 ~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334443333333333333333333
No 78
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=88.57 E-value=0.09 Score=54.66 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=38.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK 323 (421)
Q Consensus 283 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~ 323 (421)
|.|=.++||.+|-|||.|||.+...|+.+.+.+..+|..|.
T Consensus 286 ~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 286 RRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 46678899999999999999999999999999999999988
No 79
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.51 E-value=3.2 Score=33.71 Aligned_cols=47 Identities=30% Similarity=0.402 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 304 EAEELSRKVDSLIDENASLKS-------EINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~-------el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+++.|..++.....+|..|+. .+.....++.+|..||..|+.+|...
T Consensus 13 rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 13 RLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555544444444444 45555666667777777777766544
No 80
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.44 E-value=8.1 Score=36.96 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
-..+++....++.+.+-+.-+.+-..-+..+..++.++..|+-++..|..++..|.++...|.
T Consensus 65 ~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 65 KKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677788888888777777777777788888888888888888888877777766664
No 81
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=88.43 E-value=1.9 Score=37.37 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccccc
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS-AQLGNKQEIVL 360 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~-lql~~~~E~~~ 360 (421)
.+.+|+++++.++++|..|+.+...|+.+...|...-..|.+.... +-+...+|+.+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy 85 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFY 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEE
Confidence 4677888888888888888888888888888877543444444332 34444556644
No 82
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.39 E-value=9.6 Score=33.82 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 318 ENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+-..|..++..+..+|..|..+|..|-.+|..
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456667777777788888888888777764
No 83
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.17 E-value=4.3 Score=40.25 Aligned_cols=48 Identities=29% Similarity=0.376 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
..++..|..++..++.+...|..++..|..+...|+.+...|+.++..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666655555555544
No 84
>PRK09039 hypothetical protein; Validated
Probab=88.10 E-value=5.8 Score=40.77 Aligned_cols=6 Identities=33% Similarity=0.501 Sum_probs=2.5
Q ss_pred cccccC
Q 014660 393 HLFEKN 398 (421)
Q Consensus 393 ~~~~~~ 398 (421)
-+|..+
T Consensus 226 vlF~~g 231 (343)
T PRK09039 226 VLFPTG 231 (343)
T ss_pred ceeCCC
Confidence 344433
No 85
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=88.09 E-value=0.27 Score=42.35 Aligned_cols=49 Identities=39% Similarity=0.508 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+|+.|...+..|..+|..|+.++..|..++..+..+...|+..|..++
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq 73 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQ 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhh
Confidence 5889999999999999999999999999999999888888888886554
No 86
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=87.89 E-value=6.5 Score=37.88 Aligned_cols=54 Identities=24% Similarity=0.221 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
-+.||..+++ ...++..|+.+=..|..++-.+...|..|+.|...||.+....+
T Consensus 163 N~~RK~~Q~~-~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 163 NRERKRRQEE-AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555444 67778888888888888888888888888888888888877554
No 87
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.76 E-value=1.8 Score=47.87 Aligned_cols=45 Identities=29% Similarity=0.462 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.+..|+.+|+.|+.||..|..++.+|+.++..|+.+...++.++.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777776666666666666666555554
No 88
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.68 E-value=7.9 Score=39.37 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 014660 335 KLRQENAALLEK 346 (421)
Q Consensus 335 ~L~~EN~~Lkek 346 (421)
.+..|...|+.+
T Consensus 110 ~~~~e~~sl~~q 121 (314)
T PF04111_consen 110 EFQEERDSLKNQ 121 (314)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333444433
No 89
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.64 E-value=7.8 Score=37.21 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
-+.+++.+++.|..+++.+++++..++.++..+++.+.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555554444444444433
No 90
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=87.61 E-value=3.4 Score=39.10 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.++.+++|+.+++.++.....- .+-..+-+++..|+.++..|+.+|..+
T Consensus 81 ~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 81 LEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555554443222111 122233344555555666666666543
No 91
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.58 E-value=4.3 Score=39.83 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
|+++.+.+.++...|+++++....+++.+..++..|+.+...+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5555555556666666666666666666666666666666554
No 92
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.53 E-value=5 Score=41.92 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.|-+.+...||.-+..|++||..|.-++..+.++|.+.+.|+++|..+|.+.
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 4556677778888889999999999999999999999999999988888764
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.42 E-value=2.3 Score=43.13 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
+.+++.|+.|...|.+++..|+.+...|..|...|
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 94
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.39 E-value=3.8 Score=33.26 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQL 329 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L 329 (421)
.|..+++.|..++.....++..|
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L 31 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRL 31 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 95
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=87.39 E-value=2.5 Score=37.29 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+|-+|+.-...|.+++..+++++.+|++||+.|-+-|.++
T Consensus 64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3344444444555666777777778888888888877765
No 96
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.36 E-value=1.9 Score=47.28 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 014660 293 SARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIV 359 (421)
Q Consensus 293 SARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~ 359 (421)
.|.+.|..-.+.+.++..++..|++|...++..+..|.++...|+.||..|+.+|..++-....|+.
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl 197 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL 197 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3444444445556666667777777777777777777777777777777777777776544444443
No 97
>PRK02119 hypothetical protein; Provisional
Probab=87.29 E-value=4.3 Score=33.20 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccc
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGN 354 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l--ql~~ 354 (421)
++..|+.|+..|+.....+..-|..|.+.+.+...+...|+.+|+.+ ++..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999887 4444
No 98
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.26 E-value=5.5 Score=42.07 Aligned_cols=40 Identities=15% Similarity=0.329 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
..|+.+++.|+.++..+..++..|.+++..+..+...+..
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333333
No 99
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.23 E-value=5.3 Score=41.21 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 354 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~ 354 (421)
-..|..-+.+.+.+|..|..++..|++++..+..++..||+++...+++.
T Consensus 67 ~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 67 NKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD 116 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh
Confidence 35677788888889999999999999999999999999999988877655
No 100
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=87.18 E-value=6.5 Score=37.07 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 298 RlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
..+.+.++++|+.+++.|+.||..|.+++..+++.|..|..
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777777777776666653
No 101
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=87.04 E-value=3.2 Score=35.34 Aligned_cols=38 Identities=39% Similarity=0.487 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhh
Q 014660 314 SLIDENASLKSEINQLSENS------EKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e~~------~~L~~EN~~LkekL~~lq 351 (421)
-|..+|..|+.||..|+.++ .+...||.+|++++..++
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777543 466788888888887764
No 102
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.02 E-value=7.1 Score=37.27 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (421)
Q Consensus 284 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~ 341 (421)
.+.++....+-+..+.+.+.+...|+.++..-+.++..|..++..|..++..|+.+.+
T Consensus 91 l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~ 148 (190)
T PF05266_consen 91 LRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAA 148 (190)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666665544555555555544444444444433
No 103
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.93 E-value=0.9 Score=48.70 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=19.4
Q ss_pred CCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCC--CcccccCC
Q 014660 44 AIP-PYYNSPIASGHAPQPYMWGPAQPMMPPYGA--PYAAIYST 84 (421)
Q Consensus 44 ~~p-p~f~s~vas~p~phPYMWG~~qpmmpPYGt--PY~a~Yp~ 84 (421)
++| |+|+.+ ++||.+ +.+.+.||- ||-+|||-
T Consensus 420 ppp~p~f~m~-----~~hP~~----~~p~~~~g~~~P~~~mpp~ 454 (483)
T KOG2236|consen 420 PPPSPSFPMF-----QPHPPE----SNPPANFGQANPFNQMPPA 454 (483)
T ss_pred CCCCCCCCcc-----CCCCCC----CCCcccccccCccccCCCC
Confidence 444 677544 677754 345566665 87777753
No 104
>PF15294 Leu_zip: Leucine zipper
Probab=86.77 E-value=2 Score=43.49 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
|..++..|+.||..|+.++..+..+|.....|...|..+|.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999885
No 105
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=86.76 E-value=10 Score=30.41 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|..++...+..|..+.++|.....++..|..+...|+.++..++
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455567778888888888888888888888888888887765
No 106
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.68 E-value=13 Score=34.17 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=40.1
Q ss_pred hhhhHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 275 IQNERELKRERRKQSN----RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 275 ~qdErE~KR~RRk~sN----RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++-+.++||.+|.-.| =++..|--.--+...+.+...++.-++++..|..++..+..+...|..|...|+.+-.+
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~ 84 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKEN 84 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666766665443 23344444444555555555555555555556666655555555555555555544444
No 107
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.66 E-value=9.9 Score=36.31 Aligned_cols=52 Identities=27% Similarity=0.364 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+...++.+|+.++.+|+.+...|..+......++.+|..+.+.|++.+.+.+
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666555555555555566666666666666665544
No 108
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.59 E-value=4.6 Score=36.07 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDEN 319 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN 319 (421)
.-..||+..-..+.+.--.|=.+.-+.|..++-.|..+|
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333333333333333333343343333
No 109
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.55 E-value=1.7 Score=44.56 Aligned_cols=46 Identities=35% Similarity=0.468 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++|..++..|+++|..|+.++..++.+|..|..+|..||+..-.++
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777777777777777777777777777777776665543
No 110
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.47 E-value=9.2 Score=38.00 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=44.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHh
Q 014660 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN---------SEKLRQENAALLEKLKSA 350 (421)
Q Consensus 286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~---------~~~L~~EN~~LkekL~~l 350 (421)
+...-.+.+++.=.-++.++++|+.+|..|+.+.+.+++++..++.. +..|..|...++.++..+
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44445677777777788888999999999988888888877766543 345555555555554443
No 111
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=86.42 E-value=4.4 Score=37.75 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014660 314 SLIDENASLKSEINQLSE 331 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e 331 (421)
.++.+...|..++..|++
T Consensus 86 ~~~~e~k~L~~~v~~Le~ 103 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEE 103 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 112
>PRK04406 hypothetical protein; Provisional
Probab=86.35 E-value=5.3 Score=32.90 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++.|+.|+..|+.....+..-|..|.+.+.+...+...|+.+|+.+
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999887
No 113
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.23 E-value=8.1 Score=41.29 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=49.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
||++-.+++=+.-.++....+.+...|+.++..|+.++..|..+|.+....+.+++..+..+...|..++
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444455555667778888888888888888888888888777777777777777776664
No 114
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.19 E-value=5.6 Score=39.32 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
-+|..+++.|++|...||-+|+++.-+++++....+.|-..|..
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666655554
No 115
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=86.13 E-value=4 Score=34.92 Aligned_cols=43 Identities=35% Similarity=0.457 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
|+-|-...+.+|+.|+.+|..|..++..|+.++...+.|-..|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666666666666666666665555555554444
No 116
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=85.86 E-value=4.8 Score=41.09 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 280 ELKRERRKQSNRESARRSRLRKQ---AEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 280 E~KR~RRk~sNRESARRSRlRKq---a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
..||+.||..--..-+|-|..++ -+|++|+.|-++|+.+-.+|.+||..|++-+....
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666633333333333333 35666677777777777777777777776555443
No 117
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.85 E-value=3.7 Score=35.53 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSL--IDENASLKSEINQLSENSEKLRQENAALL 344 (421)
Q Consensus 304 ~leeLE~rVe~L--~~EN~~L~~el~~L~e~~~~L~~EN~~Lk 344 (421)
++..||.+++.| ..+...|+-++.+++-++..+..+.+.+.
T Consensus 50 Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 50 RLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444444444 44444444444444444444444444333
No 118
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.84 E-value=3.2 Score=42.34 Aligned_cols=73 Identities=27% Similarity=0.283 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHhHHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 277 NERELKRERRKQSNRESAR-RSRLR-----KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 277 dErE~KR~RRk~sNRESAR-RSRlR-----Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.|-|.|-.+-++.|..==. ++.+- =|..|++|+..+.+|.+++.....++.+++..+..|+.|...|+++|..
T Consensus 87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777887732110 11111 1455677777777777777777777888888888888999999988875
No 119
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=85.82 E-value=12 Score=37.87 Aligned_cols=49 Identities=24% Similarity=0.330 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.+++.++.++.+.+++...++.++...+.++..|+.+-..|...+..+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777777777777777777777777766666665544
No 120
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.82 E-value=2.7 Score=46.64 Aligned_cols=53 Identities=25% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 354 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~ 354 (421)
..++.+||.|-.+|..|..++..++++|++.+.+...|..+||-.+.++|...
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~ 144 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQL 144 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 46788899999999999999999999999998888889999998888776443
No 121
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=85.69 E-value=3 Score=32.71 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
+.++++.+|+.+++.|+.+|..|..++..|+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667777777777777777777777773
No 122
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.61 E-value=6.3 Score=43.37 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 278 ErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
+...++...+++-|..||..-.--...+.+|+.++..++..+..|..++..|+.++..|..+...+|.+
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333344444445555555444333344445555555544444444444444444444444444444433
No 123
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.53 E-value=7.1 Score=44.79 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 328 QLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 328 ~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.|..+++.|.....+|-.+|.+
T Consensus 441 ql~~eletLn~k~qqls~kl~D 462 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQD 462 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 3333333333333444444433
No 124
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.08 E-value=11 Score=41.63 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
.|..++..++.++..|+.++..|..+
T Consensus 210 ~L~~q~~e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 210 SLKEQLAEARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444443333333
No 125
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.70 E-value=8.5 Score=45.25 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 294 ARRSRLRKQAEAEELSRKV-DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rV-e~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.++++.+....+.+++.+. ..|..+..++..+++.|.++.+.|+.++..|++++.++
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555 45555556666667777777777777777777777665
No 126
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=84.65 E-value=1.4 Score=39.33 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
..|+.+|..|.+++..|+.||..||.-
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555566666666677777653
No 127
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=84.54 E-value=4 Score=32.20 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
+++||.++..|+.....++++++.+++.++.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555555555555444443
No 128
>PF15058 Speriolin_N: Speriolin N terminus
Probab=84.51 E-value=2.3 Score=41.16 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.|.|.++.+.|-.||.+|++.++-++ ||.+||.-|.+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLir--------EN~eLksaL~ea 44 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIR--------ENHELKSALGEA 44 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHh
Confidence 46778888888888888888877766 788888887764
No 129
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=84.50 E-value=7.5 Score=37.63 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 278 ERELKRERRKQSNRESARRSRLRKQAE----AEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 278 ErE~KR~RRk~sNRESARRSRlRKqa~----leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
|.-.+|.||-+..+.++=.-+-+=-++ +...-.++..|+..|+.|..+..+|+..|.-|
T Consensus 19 eel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFL 81 (195)
T PF10226_consen 19 EELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFL 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 445688999888888876544433332 33334566778888888888888888777533
No 130
>PRK02793 phi X174 lysis protein; Provisional
Probab=84.35 E-value=7.1 Score=31.82 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccc
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA--QLGNKQ 356 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l--ql~~~~ 356 (421)
.+|+.|+..|+.....+..-|..|.+.+.+...+...|+.+|+.+ ++...+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 468899999999999999999999998888888889999998887 454443
No 131
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=84.33 E-value=3.2 Score=36.29 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
|...+..|+.++..+..++.+|+..+.++..+...||.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555555555555555555444444455555444
No 132
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=84.25 E-value=18 Score=33.18 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014660 311 KVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~ 330 (421)
+++.++.....+.+++..+.
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 133
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=83.99 E-value=4.4 Score=36.10 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
+|=.+|..|+.....|..++..|++++..|..||..|+-+...++.
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 4567899999999999999999999999999999999999998863
No 134
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.83 E-value=10 Score=38.50 Aligned_cols=45 Identities=27% Similarity=0.329 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.+++.|..++..+..+...++.++..|+.++..+..+...|.+++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555444444444444444444443333333
No 135
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.76 E-value=21 Score=31.66 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=38.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (421)
Q Consensus 283 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~ 341 (421)
+.+-++.-.|..+-|+..=..+-++|+..+..|++++..+.+++..|+.++..++....
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666777777777777777777777777666665554443
No 136
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=83.75 E-value=4.7 Score=33.24 Aligned_cols=45 Identities=33% Similarity=0.374 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSE--------KLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~--------~L~~EN~~LkekL~~l 350 (421)
.+.+..++.|+.||-.|+=+|-.|.+++. .+..||-.|+.++..+
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L 55 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESL 55 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766666554 2344555555555444
No 137
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=83.74 E-value=3.2 Score=43.42 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAA 342 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~ 342 (421)
|+.+++.|+.++..|..++..++++..+++.|+..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (398)
T PTZ00454 27 LEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKR 61 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554433333333333
No 138
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.70 E-value=8.9 Score=43.24 Aligned_cols=8 Identities=50% Similarity=0.588 Sum_probs=3.7
Q ss_pred hhhhhhhc
Q 014660 371 TENLLSRV 378 (421)
Q Consensus 371 ~e~lls~v 378 (421)
+|.||+.|
T Consensus 589 ~e~L~~aL 596 (697)
T PF09726_consen 589 TEVLMSAL 596 (697)
T ss_pred HHHHHHHH
Confidence 44444444
No 139
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.53 E-value=4.3 Score=39.21 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 323 KSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 323 ~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
..++..|+..+..|+.+|+.|..+...+
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rql 93 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQL 93 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555444
No 140
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.47 E-value=6.1 Score=43.59 Aligned_cols=47 Identities=32% Similarity=0.403 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
++|+.+|+.+...+......|..|+....++|+.|..+|..|+.+|.
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777765
No 141
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=83.38 E-value=9.2 Score=38.82 Aligned_cols=93 Identities=24% Similarity=0.290 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhh-----cccccccccccccCC
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSE-----------KLRQENAALLEKLKSAQ-----LGNKQEIVLNEDKRV 366 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~-----------~L~~EN~~LkekL~~lq-----l~~~~E~~~~~~~~~ 366 (421)
.++..|+.+...|+.+|+.|+-|+.+++++.+ .|+.+|..+++.-..++ +.+..+ .+.-+++.
T Consensus 52 sqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaND-dLErakRa 130 (333)
T KOG1853|consen 52 SQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAND-DLERAKRA 130 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHhhhh
Confidence 34556666666666677777777666655432 34444444444333221 112111 12134577
Q ss_pred CCcchhhhhhhccCCCCccccccccccccccC
Q 014660 367 TPVSTENLLSRVNNSGTVDRNMEEGGHLFEKN 398 (421)
Q Consensus 367 ~p~~~e~lls~vd~~~~~~~~~~~~~~~~~~~ 398 (421)
.-++.++|-+++|.. ..|+.--+.+++|+-
T Consensus 131 ti~sleDfeqrLnqA--IErnAfLESELdEke 160 (333)
T KOG1853|consen 131 TIYSLEDFEQRLNQA--IERNAFLESELDEKE 160 (333)
T ss_pred hhhhHHHHHHHHHHH--HHHHHHHHHHhhHHH
Confidence 778899999998854 334444455565554
No 142
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=83.34 E-value=13 Score=34.69 Aligned_cols=37 Identities=35% Similarity=0.411 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 315 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 315 L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+++++..+.+|++.|++++.+.+.|...||.|.+.++
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888888889999999888765
No 143
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=82.93 E-value=3.8 Score=31.92 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++..+++|+.++.. |-..=...-...+.++.+|+.||..|+++|.-++
T Consensus 2 w~~Rl~ELe~klka---erE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 2 WLLRLEELERKLKA---EREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHH---hHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666655443 2111111233445555666667777777776444
No 144
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=82.92 E-value=5.2 Score=31.38 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
+..+..++..|+.++..|+.++..|+++...|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555555555555555
No 145
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.84 E-value=7.5 Score=37.59 Aligned_cols=39 Identities=31% Similarity=0.466 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
..++..|..+|..|..+...|..+...|-.++..|+.+|
T Consensus 101 ~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 101 VAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 333333333333333333333333333333333333333
No 146
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=82.83 E-value=8.9 Score=31.37 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
|-+.+..|..+-+.|......+...|..|+.++..++.+...|+.++...
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777777777777776653
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.83 E-value=9.6 Score=41.17 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhccccc
Q 014660 285 RRKQSNRESARRSRLRKQA----EAEELSRKVDSLIDENASLKSEINQLSENSEKL----RQENAALLEKLKSAQLGNKQ 356 (421)
Q Consensus 285 RRk~sNRESARRSRlRKqa----~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L----~~EN~~LkekL~~lql~~~~ 356 (421)
+-.++|=++++.+-.||.+ .+++++.++..++.+|..|.+....++.++.++ ..++..+.++|.+|+ .+.+
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq-EQlr 445 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ-EQLR 445 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4455677777777776654 455677777777878877777665444444333 333344444444444 3445
Q ss_pred ccccc
Q 014660 357 EIVLN 361 (421)
Q Consensus 357 E~~~~ 361 (421)
+++++
T Consensus 446 Dlmf~ 450 (493)
T KOG0804|consen 446 DLMFF 450 (493)
T ss_pred hHhee
Confidence 55555
No 148
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=82.71 E-value=19 Score=36.17 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccccc
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIVLN 361 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq--l~~~~E~~~~ 361 (421)
+...+..+..+|..+.+++..-++....|+.++..|+++++.++ ....+|+++.
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~ 232 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFA 232 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhH
Confidence 44556677889999999999999999999999999999999975 4455777774
No 149
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.48 E-value=9.9 Score=31.59 Aligned_cols=51 Identities=24% Similarity=0.182 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
.+++.+||.++..-+.-..+|...+...+....++..+.+.|-+++++++.
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~ 57 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356788888888888888888888888888888888899999999988763
No 150
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.36 E-value=4.5 Score=36.96 Aligned_cols=47 Identities=32% Similarity=0.453 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENS--EKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~--~~L~~EN~~LkekL~~lq 351 (421)
+.+|+.++..|+.++..|+.++..|.... ..|..+...|++++..++
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666554 556666666666665543
No 151
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.26 E-value=12 Score=37.90 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=46.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcccccccccccc
Q 014660 288 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ----ENAALLEKLKSAQLGNKQEIVLNED 363 (421)
Q Consensus 288 ~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~----EN~~LkekL~~lql~~~~E~~~~~~ 363 (421)
+++.--++.--.+....++++..+++.++.++.++..++..|+.++..|+. ++..|+.++..++.- +....|-+
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n--G~~t~Yid 121 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN--GTATSYID 121 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CChhHHHH
Confidence 333333444445556666666666666666666666666666666655533 344444444444321 11222211
Q ss_pred cCCCCcchhhhhhhccCC
Q 014660 364 KRVTPVSTENLLSRVNNS 381 (421)
Q Consensus 364 ~~~~p~~~e~lls~vd~~ 381 (421)
.-.-.-+--+|++||+.-
T Consensus 122 vil~SkSfsD~IsRvtAi 139 (265)
T COG3883 122 VILNSKSFSDLISRVTAI 139 (265)
T ss_pred HHHccCcHHHHHHHHHHH
Confidence 111122455677776643
No 152
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=82.08 E-value=2.4 Score=44.14 Aligned_cols=24 Identities=46% Similarity=0.396 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 313 DSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 313 e~L~~EN~~L~~el~~L~e~~~~L 336 (421)
..|++||..|++|++.|+.+.++|
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERL 58 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHH
Confidence 344445555555555555544444
No 153
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=82.04 E-value=25 Score=31.87 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 305 AEELSRKVDSLIDEN-ASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 305 leeLE~rVe~L~~EN-~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+..|+.....|+.|. ..++.++..|---+..+...+..+|.+|+.+
T Consensus 64 ~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 64 VKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 334444444444333 3444555555555566667777777777755
No 154
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=82.03 E-value=4.2 Score=39.45 Aligned_cols=30 Identities=43% Similarity=0.509 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 318 ENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
||..|..+|..+.+++..|+.||..|++-.
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~ela 155 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKELA 155 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555443
No 155
>PRK00295 hypothetical protein; Provisional
Probab=81.87 E-value=9 Score=30.90 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
|+.++..|+.....+..-|..|.+.+.+...+...|+.+|+.+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L 45 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777777777766
No 156
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=81.87 E-value=9.2 Score=34.49 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
.||..|+..|+.|+..+..-...|..++.-|+-.+.+.|.++..+..
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 46777777888887777777777777777778788888888776543
No 157
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.74 E-value=9.7 Score=38.58 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 014660 335 KLRQENAALLEK 346 (421)
Q Consensus 335 ~L~~EN~~Lkek 346 (421)
.|+.|...|+++
T Consensus 234 el~~el~~l~~~ 245 (325)
T PF08317_consen 234 ELQEELEELEEK 245 (325)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 158
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.72 E-value=22 Score=29.92 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSL-----IDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 303 a~leeLE~rVe~L-----~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.++..||.+++.- ......|..++..|+.+...|..+|..|+.++.
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666655522 234556778888888888888999999998875
No 159
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.72 E-value=14 Score=34.95 Aligned_cols=42 Identities=21% Similarity=0.483 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
..+|+.++..|+.++..|..++..|+.+++.++..+..+++.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~ 163 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQE 163 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888888888888888888888777666655444
No 160
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=81.68 E-value=5.7 Score=36.06 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+....+-+..|+.||..|+..+-.+++.++.=+.....|+++|+..|
T Consensus 80 l~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~q 126 (126)
T PF13118_consen 80 LDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIMQ 126 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45556677889999999999999999999999999999999998543
No 161
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=81.53 E-value=7.8 Score=38.64 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=34.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 288 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 288 ~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
.+-|+.+|.--..-+.++.+|+.+.+.|+.++.+|+.++..|+..+.
T Consensus 207 ~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 207 RKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666655666777788888888888888888888888876443
No 162
>PHA02562 46 endonuclease subunit; Provisional
Probab=81.27 E-value=15 Score=38.95 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=4.1
Q ss_pred cccccCCCCCC
Q 014660 140 LAMSIGNASAE 150 (421)
Q Consensus 140 l~m~~g~~~~~ 150 (421)
++.++|.+-+|
T Consensus 29 ~~~i~G~NG~G 39 (562)
T PHA02562 29 KTLITGKNGAG 39 (562)
T ss_pred EEEEECCCCCC
Confidence 33333333333
No 163
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=81.27 E-value=5.4 Score=31.52 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
++.|+.+...|...+..++.+++.++.+...|.+-+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 164
>PRK03918 chromosome segregation protein; Provisional
Probab=81.18 E-value=17 Score=40.77 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=10.6
Q ss_pred CCcccccCCCCCCCC
Q 014660 138 DGLAMSIGNASAESA 152 (421)
Q Consensus 138 ~Gl~m~~g~~~~~~~ 152 (421)
+|+++++|.+-+||+
T Consensus 23 ~g~~~i~G~nG~GKS 37 (880)
T PRK03918 23 DGINLIIGQNGSGKS 37 (880)
T ss_pred CCcEEEEcCCCCCHH
Confidence 367788887767664
No 165
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.01 E-value=20 Score=33.58 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
..|+.++..|+.+...+..-+..|+.++..|..++..|.+++..++
T Consensus 126 ~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 126 AQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444455555555554443
No 166
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=81.01 E-value=23 Score=30.01 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=55.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++...++..+..=..|+..+..|++++..|..|...-..+.-.+....+.|..|+..|+..+..
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5566677777888889999999999999999999999999999999999999999999888754
No 167
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.96 E-value=9.8 Score=42.45 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 288 QSNRESARRSRLRK-QAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 288 ~sNRESARRSRlRK-qa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
..+|..+.+.+..+ +.+..+|+.+++.|+.++..|+.++.+++.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443332 334555555555555555555555555543
No 168
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.90 E-value=16 Score=29.28 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
+.-.-.++.++..-+..|..|..+|..|++++..+++
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344556677777778888888888888877766654
No 169
>PRK14127 cell division protein GpsB; Provisional
Probab=80.84 E-value=3.9 Score=36.14 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
+.|+++...++.|..||..|+.++.+|++++..++
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655444333
No 170
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.73 E-value=13 Score=33.08 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 295 RRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.+|..--|.-.++|..+-+.|+.-+..|+.+...+.+++..|..+...++..|..
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666666666666666666666666666666666655543
No 171
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=80.45 E-value=1.9 Score=32.47 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 315 LIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 315 L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
|-..|..|..++..|..++..|..||-.||+++
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------------HHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 334445555555555555555555555555554
No 172
>PRK04325 hypothetical protein; Provisional
Probab=80.37 E-value=8.6 Score=31.49 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
...|+.|+..|+.....+..-|..|.+.+.+...+...|+.+|+.+
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999998888888889999988877
No 173
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=80.32 E-value=18 Score=33.75 Aligned_cols=44 Identities=27% Similarity=0.473 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+|..+++.|+.+|..|...+..+..+...|..+...|+.++..+
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l 136 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL 136 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH
Confidence 34444555555555555444444444444444444444444443
No 174
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.30 E-value=15 Score=42.41 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=55.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 285 RRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 285 RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.....+-..=+--+.+-...++.|.+.+..|+.||.+|..++..+.++..+|+.++.-||.+|+.+
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444555666777788889999999999999999999999999999999999999999999843
No 175
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=80.24 E-value=18 Score=31.98 Aligned_cols=49 Identities=27% Similarity=0.402 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~ 327 (421)
+.+||+-+.++|..+||||-+. |+.-+-.+-.+-..|..+|.-+.++..
T Consensus 48 MKEER~K~E~~~q~r~rES~~E----r~K~~~s~~~~q~Lm~rQN~mm~~qqq 96 (121)
T PF10669_consen 48 MKEERSKKEEKRQKRNRESKRE----RQKFIWSMNKQQSLMNRQNNMMKQQQQ 96 (121)
T ss_pred HHHHHHHHHHHHHHHhhhhHHH----HHhHHhhhhHHHHHHHHHhHHHHHHHH
Confidence 5678888888899999887543 344444444444446667666655543
No 176
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.17 E-value=7.2 Score=39.33 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+.+++.|..+|+.+..+...+..++.++.+++.+|..+...|++.|.+
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555556655555555555555555554
No 177
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=80.13 E-value=3.7 Score=44.34 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 305 AEELSRKVDSLIDENASLKSEI---------------NQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el---------------~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++.|..+-+.|++||.+|+++. .+|.++.++|..|.++|+..|.+++
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666665533 2333445555555555666665553
No 178
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=80.03 E-value=27 Score=33.71 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
...|-.-...+..||..|+.+|..|.+++..|+..+..|..+-..++
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~ 197 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQ 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566678889999999999999999999888888888877665
No 179
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.01 E-value=36 Score=32.29 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el 326 (421)
.+.+|+.+.+.|+.+...|+.++
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~ 150 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKC 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333
No 180
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.00 E-value=33 Score=31.53 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
....+.-+...+++++.++..++.+.++-..|++++.++++++..++.+...+++.+..
T Consensus 118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (191)
T PF04156_consen 118 LQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQ 176 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566677777777777777777777755555555555554444444444433
No 181
>smart00340 HALZ homeobox associated leucin zipper.
Probab=79.80 E-value=4 Score=30.83 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 328 QLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 328 ~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
-|++-|+.|..||+.|+.+|++++
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554
No 182
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=79.67 E-value=20 Score=40.90 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=3.1
Q ss_pred cccccCCC
Q 014660 140 LAMSIGNA 147 (421)
Q Consensus 140 l~m~~g~~ 147 (421)
+++++|.|
T Consensus 25 ~~~i~G~N 32 (1164)
T TIGR02169 25 FTVISGPN 32 (1164)
T ss_pred eEEEECCC
Confidence 33333333
No 183
>PRK02224 chromosome segregation protein; Provisional
Probab=79.67 E-value=20 Score=40.42 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.+++++.++.+|+.+++.|+.....+..++....+++..|..+...|++.+
T Consensus 503 ~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666655555555555555555555555544444444
No 184
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=79.64 E-value=7.9 Score=36.74 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++=+.+.+.|.+.|.-|+.++......+..|..++..|...+..
T Consensus 70 eEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 70 EEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555544444444444444444444433
No 185
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.61 E-value=30 Score=33.17 Aligned_cols=40 Identities=35% Similarity=0.388 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+..++..++.+...|+-+.+.|.++|.+|+.|-..|..+.
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444433
No 186
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=79.57 E-value=7.5 Score=41.07 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 292 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 292 ESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+.|.-.|+|-.+--...|..++++..|...|+.+++++..+..-|..|+..||+-++.++
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE 286 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE 286 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555666666556677778888888889999999998888889999999999888754
No 187
>PF15556 Zwint: ZW10 interactor
Probab=79.49 E-value=30 Score=34.19 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=39.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
-+.++|.+.+.=.+....++..|++...+++.....-+.++..|..++..|+.+...-+++|..
T Consensus 117 a~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR 180 (252)
T PF15556_consen 117 AMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQR 180 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666666666666666666666666666666666665555555543
No 188
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=79.43 E-value=19 Score=31.12 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASL--KSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L--~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.+++++.|+..|+.+...| +..+..|+-++.+++-+...|.++|+.+
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455577777788777777 7778888888888888888888888765
No 189
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=79.31 E-value=6.6 Score=42.53 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+++++.|+.+++.|.+++..|.++|+.|+.++..|+.+...++.++.
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 44556677777777777777888888888888888777766666543
No 190
>PRK12705 hypothetical protein; Provisional
Probab=79.25 E-value=17 Score=39.77 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e 331 (421)
|+.+.+.|......|.++...|..
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~ 116 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSA 116 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333333
No 191
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=79.18 E-value=35 Score=30.55 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 014660 338 QENAALLEKLK 348 (421)
Q Consensus 338 ~EN~~LkekL~ 348 (421)
.++..|+..|.
T Consensus 96 E~veEL~~Dv~ 106 (120)
T PF12325_consen 96 EEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 192
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.87 E-value=24 Score=37.82 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+|.+-...+.++..+|+.++..|..+..+|+.+...|+.+|..+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444555556666666667777777777777777777776553
No 193
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.85 E-value=18 Score=42.66 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+..+.+.|+-++++|+.+...+..++..+..++..|..|+..|+.++...+
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345567778888888888888888888888888888888888887776643
No 194
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=78.74 E-value=20 Score=31.59 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+...|+.+...-...|.++.++++.|.-.|.+|-.++..+|
T Consensus 27 k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 27 KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555554
No 195
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=78.69 E-value=7.5 Score=40.57 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
|..|++++.++..-..||..+.+|+.+++.-|..|...-++||+.|.+
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999975
No 196
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.60 E-value=22 Score=32.28 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=27.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 283 RERRKQSNRESARRSRLRKQAEAEELS-------RKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 283 R~RRk~sNRESARRSRlRKqa~leeLE-------~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
+..+++..-+.+.+.-.+|++.++.|+ .+++.|+.+...+..++..++.++.
T Consensus 111 ~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~ 169 (218)
T cd07596 111 DRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYE 169 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666666555554 2455555555555555554444433
No 197
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=78.49 E-value=14 Score=31.38 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++.|...+++|..-...|.++...|..++.+|...|++.|.+++.
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444555555555555567777766654
No 198
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.29 E-value=14 Score=38.73 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014660 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 354 (421)
Q Consensus 277 dErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~ 354 (421)
++..+|+.++.+-+|..|-.+-+|+.+ |+|..=..+|+.+.++|.+++..|+..++-|..-.++-.++++++....
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~ 290 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALD 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCC
Confidence 455566666667777777777776666 5666666667777777777777777777666655555555555544333
No 199
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=78.03 E-value=12 Score=32.64 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 290 NRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
-||.|+..+-=+|.+.|.|+.--+.|+.|...-+++|.+|.+++
T Consensus 56 krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 56 KREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36667777666666666666666666666666666666666543
No 200
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.88 E-value=4.4 Score=41.58 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++......+...|..+|.+-.+++.....|...|..+|.+++
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQ 247 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555777777777777777778888888877765
No 201
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=77.85 E-value=22 Score=35.81 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 293 SARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 293 SARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
-|.+-|..=|.++++|++|-.+-.-...-|+.++.-|.++|.
T Consensus 48 Ea~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~ 89 (277)
T PF15030_consen 48 EATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCR 89 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHH
Confidence 333333334444444444433333333445555555555554
No 202
>PRK14160 heat shock protein GrpE; Provisional
Probab=77.50 E-value=10 Score=37.06 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
..+..|+.++..|+.++..|..++..|+.++.++.++..-+|.+...
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777776666666655543
No 203
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=77.46 E-value=11 Score=31.61 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
.-|+.|-.||+..+.||..|..+..-|++-+..|
T Consensus 30 ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 30 DSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544444
No 204
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=77.34 E-value=3.7 Score=34.98 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
|+.+++.|..+++.|+.+|..|..+|..+++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666666666666666666666553
No 205
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=77.19 E-value=10 Score=38.32 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCcchhhhhhhccCCC
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNSG 382 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~~~~~~~~~p~~~e~lls~vd~~~ 382 (421)
.-.+.|+.+++.|++||..|+.+++.++.++.....=...+-..|-.-+|....=+++. ......-..+.+...|...+
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv~g~L~g~~V~vV~-~p~a~~~~~~~v~~~L~~AG 110 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRLVAGRLTGRSVAVVT-LPGADDEDVDAVRELLEQAG 110 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCEEEEEE-cCCCChHHHHHHHHHHHHCC
Confidence 44678888888899998888888888887666555444444444443333333333321 11111223555555555555
Q ss_pred CccccccccccccccCCCchhhhhhhhcC
Q 014660 383 TVDRNMEEGGHLFEKNSNSGAKLHQLLDA 411 (421)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~kl~qll~~ 411 (421)
...-..-.=.+-|- ++....+|.+|+..
T Consensus 111 A~v~g~i~lt~~~~-d~~~~~~l~~~~~~ 138 (308)
T PF11382_consen 111 ATVTGRITLTDKFL-DPEQADKLRSLAAQ 138 (308)
T ss_pred CeEEEEEEEchhhc-ChhhHHHHHHHHhh
Confidence 54321111111122 33456677777765
No 206
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=77.12 E-value=16 Score=40.85 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014660 300 RKQAEAEELSRKVDSLIDE 318 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~E 318 (421)
.+++++.+|+.+++.+..+
T Consensus 119 EqEerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777777777666554
No 207
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=77.01 E-value=16 Score=29.33 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|+.++..|+.....+...|..|.+...+...+...|+.+|+.+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~ 45 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLR 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777777777653
No 208
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=76.95 E-value=2.7 Score=31.59 Aligned_cols=43 Identities=30% Similarity=0.508 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 283 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el 326 (421)
|+++...||+=|+..-... ..|.+|+.++..|..||..|+.++
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4567778888887765544 457788888888888888887765
No 209
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=76.86 E-value=16 Score=34.07 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e 331 (421)
.+++.|+.|......+++.|++
T Consensus 161 ~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 161 EEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 210
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=76.83 E-value=8.5 Score=30.95 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
....+++.++++.+.|+.||..|+.|+..|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556667777777777777777777776653
No 211
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=76.82 E-value=19 Score=40.87 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 014660 311 KVDSLIDENASLKSEINQLS----------ENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~----------e~~~~L~~EN~~LkekL~~ 349 (421)
....|+.||-.|.+.|..|+ .++..|+.|+..|+.+|.+
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee 146 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEE 146 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666665544 3344555555555555443
No 212
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=76.81 E-value=11 Score=33.86 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
|..-+++|+.+++.|+-+...|.+.-..+++++.+|..+
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666555555555555555444433
No 213
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.67 E-value=36 Score=34.79 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 014660 296 RSRLRKQAEAEELSRKVDSLIDENASLKSEIN---QLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 296 RSRlRKqa~leeLE~rVe~L~~EN~~L~~el~---~L~e~~~~L~~EN~~LkekL~ 348 (421)
|+.+-+.--++++++++++--..|..|..||. .|-+...+|+.|-+-||++|+
T Consensus 126 rakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 126 RAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455567777888877777877777764 455666777778888888776
No 214
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=76.66 E-value=8.4 Score=38.10 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+-..=+.++++|+.+|..|+-+++++..+|++++++-..+..+...+..++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334568899999999999999999999999999999999998888766544
No 215
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=76.62 E-value=27 Score=40.96 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSEN---------------SEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~---------------~~~L~~EN~~LkekL~~lq 351 (421)
|+.+|+.|+..+.+|...++.|+.+ +.+|+.+|..||+-|-.++
T Consensus 330 LQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 330 LQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555544 3466777777777665544
No 216
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=76.42 E-value=11 Score=41.76 Aligned_cols=70 Identities=26% Similarity=0.307 Sum_probs=46.2
Q ss_pred CchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 271 PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 271 ~e~~~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+.-..-+.|.|-.||.| |+=|-.+-.++-++.. ++--..|..+|+.|.++|+.|+.||..||.+|..+
T Consensus 267 ~~stp~~~~d~kv~krqQ---------RmIKNResA~~SRkKK--KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 267 QSSTPNVGSDIKVLKRQQ---------RMIKNRESACQSRKKK--KEYMLGLEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred cCCCCCCccCHHHHHHHH---------HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344455677888887665 2333333344433322 12234688888899999999999999999999876
Q ss_pred h
Q 014660 351 Q 351 (421)
Q Consensus 351 q 351 (421)
.
T Consensus 336 ~ 336 (655)
T KOG4343|consen 336 V 336 (655)
T ss_pred h
Confidence 5
No 217
>PRK14162 heat shock protein GrpE; Provisional
Probab=76.41 E-value=9.9 Score=36.58 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=7.5
Q ss_pred hhhhhhhhcCC
Q 014660 402 GAKLHQLLDAS 412 (421)
Q Consensus 402 ~~kl~qll~~~ 412 (421)
.+.||+-+..-
T Consensus 149 DP~~HEAv~~~ 159 (194)
T PRK14162 149 DPTLHQAVQTV 159 (194)
T ss_pred ChhHhhhheee
Confidence 47788887543
No 218
>PRK00846 hypothetical protein; Provisional
Probab=76.36 E-value=17 Score=30.34 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.|+.|+..|+........-|..|.+.+.+...+...|+.+|+.+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L 53 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 53 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888888888888765
No 219
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=76.29 E-value=11 Score=41.66 Aligned_cols=46 Identities=37% Similarity=0.467 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.++++|..+++.++.+...|..++.++.+++...+.++..|.+++.
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666666666666555554
No 220
>smart00340 HALZ homeobox associated leucin zipper.
Probab=76.18 E-value=4.7 Score=30.46 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
.||-|.+-.+.|..||..|+.|+.+|+.
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888888888887764
No 221
>PRK00736 hypothetical protein; Provisional
Probab=76.08 E-value=18 Score=29.18 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++.|+..|+.....+..-|..|.+.+.+...+...|+.+|+.+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L 45 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL 45 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777777777777777766
No 222
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.04 E-value=22 Score=41.35 Aligned_cols=68 Identities=26% Similarity=0.247 Sum_probs=48.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 284 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
-.-.++--++++.+-....++..+|..+++.|..+-..+..+.+.....+++|+.|...|..+++.++
T Consensus 447 ~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 447 YDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566788888887788888888888888877777666666666666777777666666666654
No 223
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=75.81 E-value=11 Score=30.31 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 318 ENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+...+..++..++++..+++.||..|+.++..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555566666666666554
No 224
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=75.62 E-value=9.5 Score=39.45 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.|..++..|+.++..|+.++..|..++..++.+...|++++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 5 ALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444455555555555555555555555555565555543
No 225
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=75.48 E-value=9.2 Score=34.83 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
.+...|.-++.|+.|...=..||..|++++..+...|..|..+
T Consensus 88 li~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 88 LIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444445555555555555555555666555555566555544
No 226
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.41 E-value=20 Score=43.87 Aligned_cols=68 Identities=15% Similarity=0.155 Sum_probs=33.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQA-------------EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa-------------~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
++.+.+.+.++.|++-+.-+++ .+++|+.+++.++.+...+..++..+..++..++.+...|+.++.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666654443322 233444444444444444544455555555555555555555544
Q ss_pred H
Q 014660 349 S 349 (421)
Q Consensus 349 ~ 349 (421)
.
T Consensus 401 e 401 (1486)
T PRK04863 401 D 401 (1486)
T ss_pred H
Confidence 3
No 227
>PRK15396 murein lipoprotein; Provisional
Probab=75.40 E-value=18 Score=30.25 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+++.|..+|..|..+..+|...+..++........|-.+--++|.+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777777666666665555555544
No 228
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=75.37 E-value=18 Score=28.75 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.++++|..+.+.|..++.+|......|+.+....+++.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666665555555555555444
No 229
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=75.13 E-value=6.7 Score=43.65 Aligned_cols=45 Identities=33% Similarity=0.428 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+|-.+|++|..|+.-|+-|+...++...+|+..+..|.++|+.+
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~ 369 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKA 369 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888766665555555555555555543
No 230
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=75.11 E-value=30 Score=34.29 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 014660 328 QLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 328 ~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++.+++..|..-|++||.+|..+
T Consensus 232 k~~eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 232 KMKEEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455556666677777776543
No 231
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=75.04 E-value=9.9 Score=32.58 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENA-SLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 305 leeLE~rVe~L~~EN~-~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
-..=|.+|..|+.--. ....++..|+.++..|..||..|+.+|..
T Consensus 29 ssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 29 SSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666653332 25566777777777777777777777754
No 232
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=74.83 E-value=30 Score=31.18 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEI-NQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el-~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.++.++...+.+|+.++....+.+ ..+.++....+.....+.++|.+|
T Consensus 90 ~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 90 CENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 566777777777777666666666 444454555555666666666544
No 233
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=74.80 E-value=29 Score=36.07 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014660 280 ELKRERRKQSNRESARRSRLRKQAEA 305 (421)
Q Consensus 280 E~KR~RRk~sNRESARRSRlRKqa~l 305 (421)
..+++|+++++|...-..=.||-.++
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888887776666664443
No 234
>PRK14154 heat shock protein GrpE; Provisional
Probab=74.72 E-value=9.9 Score=37.05 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=8.7
Q ss_pred hhhhhhhhcCCCc
Q 014660 402 GAKLHQLLDASPR 414 (421)
Q Consensus 402 ~~kl~qll~~~~r 414 (421)
.+.||+-+..-+.
T Consensus 164 DP~~HEAv~~~~~ 176 (208)
T PRK14154 164 DPALHEAMSVQAV 176 (208)
T ss_pred ChhHhheeeeeCC
Confidence 5778888865443
No 235
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=74.60 E-value=28 Score=32.60 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 280 E~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
-.+..+++++.|..|+---..|-.++.+|..++.+.+.....|..+|.+|...
T Consensus 82 a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~ 134 (152)
T PF11500_consen 82 AEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQ 134 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667778888888888888888888888777666666666655555543
No 236
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=74.42 E-value=43 Score=28.24 Aligned_cols=11 Identities=36% Similarity=0.410 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 014660 338 QENAALLEKLK 348 (421)
Q Consensus 338 ~EN~~LkekL~ 348 (421)
.+-..|+.+|.
T Consensus 74 ~e~~~lk~~i~ 84 (108)
T PF02403_consen 74 AEVKELKEEIK 84 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 237
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=74.30 E-value=28 Score=33.31 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++.++.|+.+++.++.....|...|..|+.++..++..-..|..+...++
T Consensus 98 ~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 98 QELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777777777777777776766665543
No 238
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=74.07 E-value=4.2 Score=32.58 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
+++.|..++..|+.+|..|..|...|+
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 239
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=74.01 E-value=11 Score=29.46 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
-.....++..|+.||..|+.+|+.++.
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677888899999999999888764
No 240
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=73.71 E-value=11 Score=41.48 Aligned_cols=64 Identities=14% Similarity=0.307 Sum_probs=41.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDE-------NASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~E-------N~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
...+++-.++...+-+++.+++++++++.|+.. ..+..+++.+|+.+.+......+.|+.+|..
T Consensus 174 k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~ 244 (555)
T TIGR03545 174 KAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQN 244 (555)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777788999999999999885 2234555555555555544444444444443
No 241
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=73.66 E-value=13 Score=38.87 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|+.+...|+.++..|..++..|+.++.+++.|...|+++|..++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445566777777777777777777777777777777777764
No 242
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=73.61 E-value=63 Score=31.83 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 315 LIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 315 L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++.|+..++..+..|+.++..|+..|..|...|..
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~ 248 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQLRE 248 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHH
Confidence 33333333334444444444444444444444433
No 243
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.40 E-value=25 Score=37.72 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
+..|+.++.....++..+++.|..+...+..|+.+
T Consensus 75 i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 75 IASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 33344444444444444555555554444444433
No 244
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=73.38 E-value=12 Score=39.22 Aligned_cols=78 Identities=27% Similarity=0.445 Sum_probs=50.7
Q ss_pred CCCCChhhhhhhcCCCCCC--CCCC-CCCCCCCCCCCCccccCCCCCCCCCCC--Cccc--------ccCCCcccCCCCC
Q 014660 27 HMYTDWAAMQAYYGPRVAI--PPYY-NSPIASGHAPQPYMWGPAQPMMPPYGA--PYAA--------IYSTGGVYAHPAV 93 (421)
Q Consensus 27 ~~yPDWs~mQAYygp~~~~--pp~f-~s~vas~p~phPYMWG~~qpmmpPYGt--PY~a--------~Yp~GgvYaHP~~ 93 (421)
|.-.|-+.+|.-|-|..++ .||| +++-|-+.-|||--| + --|+|+||. ||++ +-||-++=.||..
T Consensus 72 ~~p~dis~k~g~~r~~~~pd~~p~y~ls~gavgqip~~l~w-p-~y~~pt~~~~~p~p~~~~asmsrf~ph~~~p~~p~~ 149 (421)
T KOG3248|consen 72 PLPADISPKQGIPRPPHPPDLSPFYPLSPGAVGQIPHPLGW-P-VYPIPTFGFRHPYPGVVNASMSRFSPHHVEPGHPGL 149 (421)
T ss_pred CCcccccccCCCCCCCCCccccccccCCccccccCCCccCC-c-cccCCCCCCCCCCchhhhhhhhhcchhccCCCCCCc
Confidence 3446788899666444332 4666 455566777999999 2 447788888 8885 3356667778876
Q ss_pred CCCCCCCCCCCCC
Q 014660 94 PLGSHAHNHGVPT 106 (421)
Q Consensus 94 p~g~~p~~~~~~~ 106 (421)
...-+|+..-+++
T Consensus 150 ~tagiPhpaiv~P 162 (421)
T KOG3248|consen 150 HTAGIPHPAIVTP 162 (421)
T ss_pred cccCCCCccccCC
Confidence 6666666444433
No 245
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=73.31 E-value=33 Score=25.95 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014660 329 LSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 329 L~e~~~~L~~EN~~LkekL~~ 349 (421)
|..++..|..+|..|+.++..
T Consensus 30 le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433
No 246
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=72.96 E-value=40 Score=36.09 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+..|.+-...+.+++..|..+...|+.+.+.|+++|..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 165 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQ 165 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777777777777777777777664
No 247
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=72.95 E-value=53 Score=31.90 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 277 dErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+-|+||. +++.-.+-..|.-..-+++...|+..+..-..+-...-.+-..++.+...|+.|...++.+|..+
T Consensus 101 A~~eirR~-~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~l 173 (192)
T PF11180_consen 101 ADVEIRRA-QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQL 173 (192)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 46666667777777777777888777776666555554444555555555555555555555444
No 248
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=72.90 E-value=6 Score=35.59 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
|..-+|+|+.++..|+-||..|+++|..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 445689999999999999999999886543
No 249
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=72.85 E-value=16 Score=31.98 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|-.--+.|...+..|.+++..+.+++.+|+.++..+.++++.++
T Consensus 71 Ll~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 71 LLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456666666666666666666666666666666666554
No 250
>PF14282 FlxA: FlxA-like protein
Probab=72.71 E-value=12 Score=32.34 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLID----ENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 306 eeLE~rVe~L~~----EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
..|+.++..|.. -...-..++..|..++..|+.+...|..+...
T Consensus 29 ~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 29 KQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555 11344555566666666666666666655544
No 251
>PRK02224 chromosome segregation protein; Provisional
Probab=72.65 E-value=37 Score=38.24 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=6.4
Q ss_pred HHHhHHHHHHHHHHH
Q 014660 287 KQSNRESARRSRLRK 301 (421)
Q Consensus 287 k~sNRESARRSRlRK 301 (421)
.+++|....|.|...
T Consensus 624 ~~~~~l~~~r~~i~~ 638 (880)
T PRK02224 624 ERRERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 252
>PRK14158 heat shock protein GrpE; Provisional
Probab=72.63 E-value=16 Score=35.26 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=8.9
Q ss_pred hhhhhhhhcCCCc
Q 014660 402 GAKLHQLLDASPR 414 (421)
Q Consensus 402 ~~kl~qll~~~~r 414 (421)
.+.||+-+..-+.
T Consensus 150 DP~~HEAv~~~~~ 162 (194)
T PRK14158 150 DPAYHQAMCQVES 162 (194)
T ss_pred ChHHhhhheeecC
Confidence 5788988865443
No 253
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=72.60 E-value=35 Score=39.14 Aligned_cols=48 Identities=31% Similarity=0.396 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASLKS---------------------EINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~---------------------el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.++.++..++..+..||..|.. ++..|..+++.++.||..||-+|..+
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665544 34455566666666666666666543
No 254
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=72.50 E-value=26 Score=36.09 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
-|+++|-....|-++.+++.....=+........+-+.|.+++.+|.+||--|+++|.+++
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777666666666666778889999999999999999999876
No 255
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=72.50 E-value=13 Score=32.25 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 314 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+|+.+.+-...|..-|++.+.+|+.||..|..+|..++
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555555555543
No 256
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=72.50 E-value=55 Score=35.13 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014660 279 RELKRERRKQSNRESARRSRLRKQAEAEELSRK 311 (421)
Q Consensus 279 rE~KR~RRk~sNRESARRSRlRKqa~leeLE~r 311 (421)
.+.|..|||....|==||-|..=..++.+|-+-
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~l 258 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQL 258 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555666777776666666666543
No 257
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=72.44 E-value=21 Score=32.98 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+.|..+++.|......|...|..|.++...++.++++|..+..
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555566666666666666666655554
No 258
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=72.44 E-value=19 Score=32.72 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
++-.++..|..++..|+.+...|..++..+...
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444433
No 259
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=72.36 E-value=5.2 Score=37.71 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=2.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.|+.++++|+.++..|+.|+ .+++++.
T Consensus 28 ~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 28 NLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 34444444444444444455 5555543
No 260
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=72.21 E-value=39 Score=28.96 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.....+|..|..++..|..+...|...|....
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555543
No 261
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=72.16 E-value=15 Score=41.07 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=5.2
Q ss_pred hhhhcCCCcccc
Q 014660 406 HQLLDASPRTDA 417 (421)
Q Consensus 406 ~qll~~~~r~da 417 (421)
+.||.+.+..+-
T Consensus 211 q~l~~~~~~~~~ 222 (632)
T PF14817_consen 211 QSLLESFPAYGS 222 (632)
T ss_pred HHHhcccccCCC
Confidence 444444444433
No 262
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.82 E-value=50 Score=29.95 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 294 ARRSRLRKQAEAEELSRKVDSLIDENASLK-------SEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rVe~L~~EN~~L~-------~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+-.-|.++..+++.++..+...+.+...|+ .++..|++++..++.+...++.++..
T Consensus 108 ~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~ 170 (218)
T cd07596 108 TLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEE 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555554444443 24444455444444444444444433
No 263
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=71.64 E-value=26 Score=28.67 Aligned_cols=41 Identities=29% Similarity=0.433 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+..-+..|+..+..+...+..|..+...++.+...|+.++.
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666777777777777777777777777665
No 264
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=71.63 E-value=37 Score=32.94 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.++.+...|..+...+..+.+.|..+|..|+
T Consensus 151 q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 151 QARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 265
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=71.56 E-value=15 Score=36.98 Aligned_cols=47 Identities=32% Similarity=0.311 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+-.+..+|+.+-+.|+.++.+| .++..+...|+.||.+||+.|...+
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~----~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 64 FLKSLKDLALENEELKKELAEL----EQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3334444444444444444333 3344556678999999999887544
No 266
>PRK14161 heat shock protein GrpE; Provisional
Probab=71.50 E-value=13 Score=35.24 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=8.9
Q ss_pred hhhhhhhhcCCCcc
Q 014660 402 GAKLHQLLDASPRT 415 (421)
Q Consensus 402 ~~kl~qll~~~~r~ 415 (421)
.+.||+-+..-+..
T Consensus 132 DP~~HEAv~~~~~~ 145 (178)
T PRK14161 132 DYNLHNAISQIEHP 145 (178)
T ss_pred ChHHhhhheeeCCC
Confidence 46778877655433
No 267
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=71.47 E-value=35 Score=39.12 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+.+.|.++...+++++..++..-++|...+..|+.++..++
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34556666666666666666666677777777777777665
No 268
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=71.33 E-value=35 Score=40.39 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
++++..++..|+.....|+.++..+.+++..+..+...++.
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444333333333333333333
No 269
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=71.33 E-value=1.3 Score=43.68 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
-|..+||...++.+|++....|..++++|++++.+|.+||..|
T Consensus 120 dKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 120 DKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777777777666677777776
No 270
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=71.29 E-value=5.1 Score=43.02 Aligned_cols=48 Identities=31% Similarity=0.380 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 353 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~ 353 (421)
++|..+|..|.++|..|+-+++.+.-+|.-+..||+-|+.--..||..
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQar 93 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQAR 93 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhc
Confidence 457777888888888888888888888888888888777665555543
No 271
>PRK14155 heat shock protein GrpE; Provisional
Probab=71.28 E-value=11 Score=36.55 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=8.8
Q ss_pred hhhhhhhhcCCCcc
Q 014660 402 GAKLHQLLDASPRT 415 (421)
Q Consensus 402 ~~kl~qll~~~~r~ 415 (421)
.+.||+-+..-+..
T Consensus 127 DP~~HEAv~~~~~~ 140 (208)
T PRK14155 127 DPHLHQAMMEQPST 140 (208)
T ss_pred ChhHhceeeeecCC
Confidence 46778877655433
No 272
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.12 E-value=34 Score=40.99 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 014660 295 RRSRLRKQAEAEEL 308 (421)
Q Consensus 295 RRSRlRKqa~leeL 308 (421)
+..+.+++.++.+|
T Consensus 849 ~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 849 RKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 273
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=71.11 E-value=58 Score=32.06 Aligned_cols=80 Identities=23% Similarity=0.285 Sum_probs=43.1
Q ss_pred CchhhhhhHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 014660 271 PETWIQNERELKRERRKQSN----RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE-------KLRQE 339 (421)
Q Consensus 271 ~e~~~qdErE~KR~RRk~sN----RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~-------~L~~E 339 (421)
+..|..-+.+++..|+.+.. +.-..--+..=+..++++..+++...+.+..|..++..|+..+. .|+.+
T Consensus 46 ~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 46 SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence 34566667777766666541 11122222233455566666666666666666666666655554 44555
Q ss_pred HHHHHHHHHHh
Q 014660 340 NAALLEKLKSA 350 (421)
Q Consensus 340 N~~LkekL~~l 350 (421)
...|+++|.-+
T Consensus 126 i~~L~eEl~fl 136 (312)
T PF00038_consen 126 IQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 274
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=71.10 E-value=29 Score=35.96 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
..|..-+...++++..|..|...|+++|.+++
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445667778888888888888888887765
No 275
>PF14645 Chibby: Chibby family
Probab=70.97 E-value=17 Score=32.23 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
...|.++..+|++||.-|+-+++.|-.=+.....|...+..+
T Consensus 73 ~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~ 114 (116)
T PF14645_consen 73 NQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKE 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666677666666666665554444444444443
No 276
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=70.69 E-value=61 Score=33.35 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
+-+|..++..|..+-..+-.++..|+.+...+-
T Consensus 50 vrE~~e~~~elr~~rdeineev~elK~kR~ein 82 (294)
T COG1340 50 VRELREKAQELREERDEINEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333333
No 277
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=70.60 E-value=17 Score=37.85 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 014660 341 AALLEKLK 348 (421)
Q Consensus 341 ~~LkekL~ 348 (421)
+.|+..|.
T Consensus 197 R~lq~~L~ 204 (342)
T PF06632_consen 197 RELQRLLA 204 (342)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 278
>PHA03162 hypothetical protein; Provisional
Probab=70.59 E-value=3.1 Score=38.11 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~ 327 (421)
+++.-+|+|+.++..|+-||..|+++|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667789999999999999999999984
No 279
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=70.51 E-value=61 Score=34.95 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 313 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 313 e~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
..|.++-+.|+.++..|.+++.+|+.|...|..+-+.|
T Consensus 140 ar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 140 ARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555544444443
No 280
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=70.48 E-value=12 Score=40.42 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++.|+.....-..+...|+++.+.|+.+|+.|-++|+.+|
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3455555555556666666666666666666666666655
No 281
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.38 E-value=52 Score=33.71 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN 340 (421)
++..|..++..+..++...+.++..+++++..+....
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I 241 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKI 241 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333333
No 282
>PHA02682 ORF080 virion core protein; Provisional
Probab=70.25 E-value=12 Score=36.78 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCcchhhhhhhccCC
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNNS 381 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~~~~~~~~~p~~~e~lls~vd~~ 381 (421)
|.+|+++...|..|..|-..|..+|+..++-........+.| |...-+.. -...--|+.||||+
T Consensus 214 kkeladiadsvrdl~aeS~~LtrDIE~AKstTq~AIdDLRrL---l~~~~v~~-------------~~tps~l~drvdnt 277 (280)
T PHA02682 214 KKELADIADSVRDLNAESLSLTRDIENAKSTTQAAIDDLRRL---LTGGGVAR-------------RDTPSALRDRVDNT 277 (280)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHH---HhcCCccc-------------cCChHHHHHhhhcc
Confidence 457889999999999999999999998887555444333333 22111100 11244577899988
Q ss_pred CC
Q 014660 382 GT 383 (421)
Q Consensus 382 ~~ 383 (421)
+.
T Consensus 278 gt 279 (280)
T PHA02682 278 GT 279 (280)
T ss_pred CC
Confidence 75
No 283
>PRK11546 zraP zinc resistance protein; Provisional
Probab=70.23 E-value=12 Score=34.52 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 014660 331 ENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 331 e~~~~L~~EN~~LkekL~~lq 351 (421)
+++.+|..|+..|+.+|.+.+
T Consensus 89 ~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 89 SKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666555544
No 284
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.17 E-value=37 Score=40.19 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=35.5
Q ss_pred HHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 287 KQSNRESARRSRLRK------------QAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 287 k~sNRESARRSRlRK------------qa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
+.-+|-.|+...++. ..+|++|++.+-.|+.||..|..+|..|..
T Consensus 502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444566666665544 467899999999999999999999998876
No 285
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=70.06 E-value=19 Score=37.48 Aligned_cols=39 Identities=31% Similarity=0.225 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSEN---SEKLRQENAALLEKLK 348 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e~---~~~L~~EN~~LkekL~ 348 (421)
..+-.|.+||++|++|+.+|+.+ ++.++.||..|+..+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455666666666666666443 3445677887776554
No 286
>PRK10698 phage shock protein PspA; Provisional
Probab=69.85 E-value=64 Score=31.34 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+..|+.+++.++.....|...+..|+.++..++..-..|..+....+
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777777777777777776543
No 287
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=69.71 E-value=50 Score=36.02 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
+++.++.++..+..++..+..++..|+.+++
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le 91 (475)
T PRK10361 61 ECELLNNEVRSLQSINTSLEADLREVTTRME 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544443
No 288
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=69.51 E-value=35 Score=32.03 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=8.4
Q ss_pred cCCCCcchhhhhh
Q 014660 364 KRVTPVSTENLLS 376 (421)
Q Consensus 364 ~~~~p~~~e~lls 376 (421)
....+|.++.||.
T Consensus 76 ~~~~~v~~~eLL~ 88 (188)
T PF10018_consen 76 AEKRPVDYEELLS 88 (188)
T ss_pred cccCCCCHHHHHH
Confidence 3556677777764
No 289
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.43 E-value=53 Score=35.48 Aligned_cols=44 Identities=30% Similarity=0.312 Sum_probs=24.3
Q ss_pred HHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 286 RKQSNRESARRSRLRK-----QAEAEELSRKVDSLIDENASLKSEINQL 329 (421)
Q Consensus 286 Rk~sNRESARRSRlRK-----qa~leeLE~rVe~L~~EN~~L~~el~~L 329 (421)
-+..-|.+|++--+|- ++++.++|..+..|+.||..|.++.-++
T Consensus 26 ~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 26 EKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666555443 3455566666666666666666555443
No 290
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=69.35 E-value=15 Score=34.79 Aligned_cols=7 Identities=14% Similarity=0.629 Sum_probs=3.2
Q ss_pred hhhhhcC
Q 014660 405 LHQLLDA 411 (421)
Q Consensus 405 l~qll~~ 411 (421)
|..+|++
T Consensus 149 ~~~~~~s 155 (162)
T PF04201_consen 149 FDEVLNS 155 (162)
T ss_pred cchhhcc
Confidence 4444443
No 291
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=69.15 E-value=24 Score=28.29 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
++.++..|+..+..+..++..+.+++.++.
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 292
>PRK14143 heat shock protein GrpE; Provisional
Probab=69.12 E-value=21 Score=35.39 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=7.7
Q ss_pred hhhhhhhhcCCC
Q 014660 402 GAKLHQLLDASP 413 (421)
Q Consensus 402 ~~kl~qll~~~~ 413 (421)
.+.||+-+..-+
T Consensus 178 DP~~HEAv~~~~ 189 (238)
T PRK14143 178 DPNLHEAVLREP 189 (238)
T ss_pred ChHHhheeeeec
Confidence 467888775443
No 293
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=69.10 E-value=15 Score=38.05 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
+.+|+.++++|+..+..|..++..++.+..+++.++..|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 10 NSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567888888888888888888888888888889988876
No 294
>PRK14139 heat shock protein GrpE; Provisional
Probab=68.98 E-value=20 Score=34.33 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=8.1
Q ss_pred hhhhhhhhcCCC
Q 014660 402 GAKLHQLLDASP 413 (421)
Q Consensus 402 ~~kl~qll~~~~ 413 (421)
.+.||+-+..-+
T Consensus 140 DP~~HEAv~~~~ 151 (185)
T PRK14139 140 DPHQHQAISMVP 151 (185)
T ss_pred ChHHhheeeeec
Confidence 467788776544
No 295
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=68.92 E-value=22 Score=36.06 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 014660 278 ERELKRERRKQSNRESAR-RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQ 356 (421)
Q Consensus 278 ErE~KR~RRk~sNRESAR-RSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~ 356 (421)
-...|---.-++|||..- .+|.||+.-. .++..|+...- -..+|..|++++.+++.|+....++|.++......
T Consensus 123 ~d~yR~~LK~IR~~E~sl~p~R~~r~~l~----d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lK 197 (271)
T PF13805_consen 123 LDQYRIHLKSIRNREESLQPSRDRRRKLQ----DEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLK 197 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHHH----HHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Confidence 334445555677887654 4455554333 33334443322 13356666666666666666666666665433333
Q ss_pred c
Q 014660 357 E 357 (421)
Q Consensus 357 E 357 (421)
|
T Consensus 198 E 198 (271)
T PF13805_consen 198 E 198 (271)
T ss_dssp H
T ss_pred H
Confidence 3
No 296
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=68.59 E-value=85 Score=31.97 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+..++.+.++++..++......+.+|..+
T Consensus 211 ~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 211 ELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333433333444444444444444
No 297
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.51 E-value=15 Score=37.66 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=10.5
Q ss_pred CCCCcchhhhhhhcc
Q 014660 365 RVTPVSTENLLSRVN 379 (421)
Q Consensus 365 ~~~p~~~e~lls~vd 379 (421)
.+.-.+.|.||..+.
T Consensus 155 NiQN~KLEsLLqsME 169 (305)
T PF15290_consen 155 NIQNKKLESLLQSME 169 (305)
T ss_pred hhhHhHHHHHHHHHH
Confidence 455566888888665
No 298
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=68.37 E-value=11 Score=33.82 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=20.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLK 323 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~ 323 (421)
..|..|+.++||.++ ++++++|+.+++.|+.+...+.
T Consensus 96 ~~Rs~~ke~~Ke~~~------~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 96 YWRSARKEAKKEEEL------QERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 346666655555432 3455666666666666555443
No 299
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=68.21 E-value=15 Score=33.95 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014660 330 SENSEKLRQENAALLEK 346 (421)
Q Consensus 330 ~e~~~~L~~EN~~Lkek 346 (421)
++++++|+.|.+.|+++
T Consensus 72 ~Rk~~kl~~el~~~~~~ 88 (161)
T PF04420_consen 72 NRKLDKLEEELEKLNKS 88 (161)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 300
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=67.99 E-value=31 Score=33.00 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
.+|++++++-+.+.+.++.+..+|+.+|...+
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666665555555555544
No 301
>PHA03155 hypothetical protein; Provisional
Probab=67.99 E-value=6.6 Score=35.17 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQ 328 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~ 328 (421)
-+|+|+.++..|+-||..|++++.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999998854
No 302
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=67.89 E-value=87 Score=28.81 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+..+...|+.+.......+..+++++..+..+...|+..+..
T Consensus 89 ~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 89 LSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334443333334444444444444444444444443
No 303
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=67.87 E-value=44 Score=31.55 Aligned_cols=47 Identities=23% Similarity=0.385 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.++.|+..++.+......|+..|..|+.++..++.+-..|+.+....
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a 145 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAA 145 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666555443
No 304
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=67.85 E-value=68 Score=27.77 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc--ccCCCCcchhhhhhhc
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNE--DKRVTPVSTENLLSRV 378 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~~~~--~~~~~p~~~e~lls~v 378 (421)
+.+++.+.+.+..|..|...+..-+.-..++...++.|+.+....+ .....++-.+ .....|.++-++|-++
T Consensus 35 ~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~-e~ik~~lk~d~Ca~~~~P~~V~d~L~~~ 108 (110)
T PF10828_consen 35 KAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERR-ESIKTALKDDPCANTAVPDAVIDSLRRL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHccCccccCCCCHHHHHHHHHh
Confidence 4445555555555666666555555555555555555554443322 1111121111 1245666777777665
No 305
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=67.83 E-value=26 Score=29.52 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
|..++..+.+++..++.+...+.++|.
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 306
>PRK14148 heat shock protein GrpE; Provisional
Probab=67.80 E-value=11 Score=36.28 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=9.2
Q ss_pred hhhhhhhhcCCCcc
Q 014660 402 GAKLHQLLDASPRT 415 (421)
Q Consensus 402 ~~kl~qll~~~~r~ 415 (421)
.+.|||-+..-+..
T Consensus 150 DP~~HEAv~~~~~~ 163 (195)
T PRK14148 150 DPNLHEAMAMIPNP 163 (195)
T ss_pred ChhHhheeeeeCCC
Confidence 46778877765543
No 307
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=67.71 E-value=64 Score=30.65 Aligned_cols=10 Identities=10% Similarity=0.398 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 014660 326 INQLSENSEK 335 (421)
Q Consensus 326 l~~L~e~~~~ 335 (421)
+..|++++..
T Consensus 112 l~~l~~~~~~ 121 (188)
T PF03962_consen 112 LEELKKELKE 121 (188)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 308
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=67.54 E-value=54 Score=31.95 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=31.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
++..-=|.+.+.|....+..++|+.++..|+.+...|+.++..+++.--+.......++..
T Consensus 99 tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~ 159 (203)
T KOG3433|consen 99 TLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKT 159 (203)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3333344455555555555566666666666655556666655554444443333333333
No 309
>PRK14140 heat shock protein GrpE; Provisional
Probab=67.54 E-value=21 Score=34.36 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=9.7
Q ss_pred hhhhhhhhcCCCccc
Q 014660 402 GAKLHQLLDASPRTD 416 (421)
Q Consensus 402 ~~kl~qll~~~~r~d 416 (421)
.+.+|+-+..-+..|
T Consensus 147 DP~~HEAv~~~~~~~ 161 (191)
T PRK14140 147 DPNLHQAVMQDEDED 161 (191)
T ss_pred ChHHhccceeeCCCC
Confidence 577888876555433
No 310
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=67.35 E-value=28 Score=36.05 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
-|++..+++++|+.+.+.|.++|...+..|..|..++..|..--.-|++.|.
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~ 153 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLG 153 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 3667778889999999999999999999999999988888777777776664
No 311
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=67.28 E-value=21 Score=38.10 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~ 335 (421)
++++++-|++.+.+.|+..|..|+.+++.|+.++..
T Consensus 287 q~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~~ 322 (411)
T KOG1318|consen 287 QTLQRARELENRQKKLESTNQELALRIEELKSEAGR 322 (411)
T ss_pred HHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 344557777777777777777777777777776653
No 312
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.12 E-value=57 Score=36.03 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.+..|..+++.++.+...+..++..+.+++..++.+...|+.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444433
No 313
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.01 E-value=20 Score=35.29 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
.||.-+.+++.|....+..+.++.++|..|..+...||.+
T Consensus 64 ~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 64 TLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555556666666666665555555
No 314
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=66.98 E-value=33 Score=28.88 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+.+++|...|..|.....+|...++.++++......|+.+-.++|.+
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888865
No 315
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=66.97 E-value=59 Score=35.02 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 293 SARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (421)
Q Consensus 293 SARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lk 344 (421)
.|++--.+-++++..|.++...|..+...|..+-..|..+...|..+-..|.
T Consensus 127 ~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 127 AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555554444444
No 316
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.96 E-value=61 Score=33.68 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014660 294 ARRSRLRKQAEAEELSRKV 312 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rV 312 (421)
-+|.-.|+|.++++|+...
T Consensus 353 rqraeekeq~eaee~~ra~ 371 (445)
T KOG2891|consen 353 RQRAEEKEQKEAEELERAR 371 (445)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3444456666666666443
No 317
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=66.86 E-value=48 Score=38.09 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
+..+.|+++++.+++...+++..-.+|+...+.|+.|..+|+.
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555553
No 318
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=66.84 E-value=82 Score=27.66 Aligned_cols=28 Identities=14% Similarity=-0.059 Sum_probs=15.5
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 014660 274 WIQNERELKRERRKQSNRESARRSRLRK 301 (421)
Q Consensus 274 ~~qdErE~KR~RRk~sNRESARRSRlRK 301 (421)
|....+...+.+|.+-.+..+-..-...
T Consensus 13 ~~~~~~~~~~~~~~l~~~l~~~l~~f~~ 40 (117)
T COG2919 13 ATRQGERRVRRRRILTLVLLALLALFQY 40 (117)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556666666666665554433
No 319
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=66.78 E-value=1.9 Score=48.02 Aligned_cols=76 Identities=21% Similarity=0.352 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Q 014660 275 IQNERELKRERRKQSNRESARRSRL-RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK---LRQENAALLEKLKSA 350 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRl-RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~---L~~EN~~LkekL~~l 350 (421)
+.||-+.=|.+.-.-.|-.+.-.|. +|-+.+++|..+|+.|+.+|..|.+.+..|.+++.+ ++.++..|+.+|.++
T Consensus 296 LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eL 375 (713)
T PF05622_consen 296 LRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQEL 375 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5566666566555555543333333 456778899999999999998887777666655443 344444444444443
No 320
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.61 E-value=1.3e+02 Score=29.74 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+|..+.+....|+.....++.+..+.++...++..|...|+.++..++
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333336677777777777777777777777788888888888887764
No 321
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=66.29 E-value=35 Score=29.20 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|...-.||..|+.++.+|+.-+ ...|-..|-+++..++
T Consensus 46 vtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~ 83 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELR 83 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHH
Confidence 3455667888888888887655 3445555555555543
No 322
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=66.23 E-value=33 Score=35.08 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
++++|+.+++.++++...+..++..+.
T Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 61 (378)
T TIGR01554 35 EKEELETDVEKLKEEIKLLEDAIADLE 61 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444444433
No 323
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=66.22 E-value=12 Score=33.60 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 295 RRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
.|++.+.+..-++++++++.|+.+...|..+++.+++
T Consensus 97 ~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 97 WRSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555567777888887777777777766653
No 324
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.19 E-value=32 Score=39.22 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 354 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~ 354 (421)
.++.|+.+...|+.|..+++.+=.+|-..|..|+.||-.|..++..++..+
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQ 120 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQ 120 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 345556666666666666666666777788999999999999998875443
No 325
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=65.97 E-value=25 Score=36.07 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+-|..+++.|+.....|+.++.....+++.+......|+.++..++
T Consensus 115 d~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 115 DLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555666666666666666654
No 326
>PRK04863 mukB cell division protein MukB; Provisional
Probab=65.85 E-value=58 Score=40.06 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=9.4
Q ss_pred CCCcchhhhhhhccCC
Q 014660 366 VTPVSTENLLSRVNNS 381 (421)
Q Consensus 366 ~~p~~~e~lls~vd~~ 381 (421)
..+++.|+|...+++-
T Consensus 432 ~~~~SdEeLe~~LenF 447 (1486)
T PRK04863 432 LPDLTADNAEDWLEEF 447 (1486)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3456666666665544
No 327
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=65.60 E-value=26 Score=30.52 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+|..++.-.+.|-.-|++.+..|..+++.|..|...+|.+....
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 466666666777777777777777777777777777777766543
No 328
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=65.41 E-value=24 Score=29.32 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
..+..+++.++.+..+|..||..|+-++..
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 329
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=65.37 E-value=8.9 Score=37.07 Aligned_cols=7 Identities=57% Similarity=1.275 Sum_probs=3.7
Q ss_pred hhhhhhH
Q 014660 273 TWIQNER 279 (421)
Q Consensus 273 ~~~qdEr 279 (421)
+|.|+-|
T Consensus 96 vWFQNRR 102 (198)
T KOG0483|consen 96 VWFQNRR 102 (198)
T ss_pred HHHhhcc
Confidence 4666533
No 330
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.29 E-value=79 Score=29.84 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++.++..|+.....+...+..|+..+..|+.....|+.+...+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555443
No 331
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=65.29 E-value=1.2e+02 Score=28.50 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=36.1
Q ss_pred CchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 271 PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 271 ~e~~~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
-++-..+|++.||++-..--+.....-=.|+.....+.+.+...-..|-..|..+-..|+.+
T Consensus 41 lDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~rere~~q~~ 102 (157)
T PF15236_consen 41 LDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAREREELQRQ 102 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34456788998888877766666665555555555555555544444444555555444443
No 332
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.97 E-value=23 Score=39.08 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+++++.+..++..+..||..|..+|..++++...++.|+..|.+.|..
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666777788888888888888888888888887777754
No 333
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=64.83 E-value=20 Score=34.18 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 014660 318 ENASLKSEINQLSE 331 (421)
Q Consensus 318 EN~~L~~el~~L~e 331 (421)
+|..+..++..+.-
T Consensus 72 ~Ne~~~~~~~~l~l 85 (225)
T PF04340_consen 72 ENEAIFQRLHRLVL 85 (225)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 334
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.72 E-value=57 Score=33.74 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=11.8
Q ss_pred CCCCCCCcccccCCC-cccCCCCCCCC
Q 014660 71 MPPYGAPYAAIYSTG-GVYAHPAVPLG 96 (421)
Q Consensus 71 mpPYGtPY~a~Yp~G-gvYaHP~~p~g 96 (421)
.|+|+.=-..+|-.. +.+.-|.++++
T Consensus 4 ~~~y~~r~d~l~~~~~~dw~~p~~~~~ 30 (306)
T PF04849_consen 4 LPPYKLRADTLYGYDNQDWLTPAAPPD 30 (306)
T ss_pred CCCCCcccccccccccccccCCCCCCC
Confidence 466766322233222 45545555543
No 335
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=64.66 E-value=65 Score=36.38 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEI 358 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~ 358 (421)
.+|..+++++.....+|++.|.+-+.++.+|+.+..+-..+++++.....-.+
T Consensus 103 qel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl 155 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKL 155 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCce
Confidence 34666666666666666666666666666666666666666666654443333
No 336
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.62 E-value=30 Score=34.71 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS----ENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~----e~~~~L~~EN~~LkekL~~lq 351 (421)
+..+++++.+|..|...|..++..++ +-...++.+...|+.-+.+.-
T Consensus 59 ~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~ 109 (247)
T COG3879 59 LRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVP 109 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCC
Confidence 34444444445555445555454444 334455556666766666554
No 337
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=64.54 E-value=50 Score=37.17 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCCC
Q 014660 96 GSHAHNHGVPTSPA 109 (421)
Q Consensus 96 g~~p~~~~~~~sp~ 109 (421)
|..=|+...|++..
T Consensus 445 GaRCYGfVTMSts~ 458 (940)
T KOG4661|consen 445 GARCYGFVTMSTSA 458 (940)
T ss_pred CcceeEEEEecchH
Confidence 44444555555433
No 338
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=64.50 E-value=79 Score=25.93 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEK 335 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~ 335 (421)
++.|+.+++.+..|-..+..+.+.+.+..+.
T Consensus 35 i~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 35 IDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 339
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=64.43 E-value=31 Score=28.32 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
.+|+.....-.++|..|...+..|..+...|..+
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433333
No 340
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=64.41 E-value=63 Score=25.49 Aligned_cols=48 Identities=29% Similarity=0.383 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEIN--------------QLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~--------------~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++++.|+.+++.|+.+...+...|+ .-++++..+..+...|.+.|..+
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555555554442 33455556666666666666544
No 341
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.40 E-value=34 Score=28.82 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el 326 (421)
.+++.|..++..|..+|..|+.++
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666666666655
No 342
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=64.40 E-value=84 Score=29.68 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 276 QNERELKRERRKQSNRESARRSRLRKQ-----AEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 276 qdErE~KR~RRk~sNRESARRSRlRKq-----a~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
.-|.++.|.++-.+.|..++++|.-.. ...++|+.-++-+++|...+|++|..+.
T Consensus 38 AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vN 97 (159)
T PF04949_consen 38 AKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVN 97 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 345666677777888888888875321 2223444434444444444444444333
No 343
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=64.31 E-value=27 Score=34.19 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEIN---QLSENSEKLR 337 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~---~L~e~~~~L~ 337 (421)
-....+|.++.+.|++||..|+.++. .+++++++|+
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~ 106 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQELEQLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555444 3344444444
No 344
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=64.29 E-value=53 Score=27.63 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
+.+++.|..-...|+.+|....+-..+|+.++..++.
T Consensus 18 ~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 18 QEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444555555555545555555554444
No 345
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=64.24 E-value=21 Score=29.30 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 314 SLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.|+.+...|..++..|+.+...+..+...|+..|.
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444445555555444
No 346
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=64.14 E-value=14 Score=40.37 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lk 344 (421)
.+|..++..|.+.|..|.+.+.+.++++.+|+.|...|.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666666666666666666666655544444444443
No 347
>PRK14151 heat shock protein GrpE; Provisional
Probab=64.09 E-value=25 Score=33.30 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=10.3
Q ss_pred hhhhhhhhcCCCccc
Q 014660 402 GAKLHQLLDASPRTD 416 (421)
Q Consensus 402 ~~kl~qll~~~~r~d 416 (421)
.+.+|+-+..-+..|
T Consensus 131 DP~~HEAv~~~~~~~ 145 (176)
T PRK14151 131 NPEHHQAMAMQESAD 145 (176)
T ss_pred CHHHhhcceeeCCCC
Confidence 578899887665443
No 348
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.88 E-value=42 Score=36.15 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 312 VDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L 336 (421)
+..++.+...|++|+..|.+++-++
T Consensus 50 ~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 50 LQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555544444433
No 349
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.73 E-value=58 Score=36.57 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSE---NSEKLRQENAALLEK 346 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e---~~~~L~~EN~~Lkek 346 (421)
.....|+.||-.|.+.+..|+. +++.|+.|+.+|.++
T Consensus 170 seYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe 209 (772)
T KOG0999|consen 170 SEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEE 209 (772)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 4456777888888887776653 344455555444443
No 350
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=63.69 E-value=29 Score=38.83 Aligned_cols=24 Identities=42% Similarity=0.583 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 014660 331 ENSEKLRQENAALLEKLKSAQLGN 354 (421)
Q Consensus 331 e~~~~L~~EN~~LkekL~~lql~~ 354 (421)
..+..|+.||..|+++|..+..+.
T Consensus 566 ~~l~~L~~En~~L~~~l~~le~~~ 589 (722)
T PF05557_consen 566 STLEALQAENEDLLARLRSLEEGN 589 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC
Confidence 446678888999998887765443
No 351
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=63.66 E-value=26 Score=32.38 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 014660 298 RLRKQAEAEELSRKVDSLID---ENASLKSEINQLSENSE 334 (421)
Q Consensus 298 RlRKqa~leeLE~rVe~L~~---EN~~L~~el~~L~e~~~ 334 (421)
|.-.+.+|.+...+++.|+. .|..|+.+|..|+..+.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 33444455555555555555 55566666666665554
No 352
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=63.62 E-value=50 Score=29.81 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+|..-..=+-|-.+|+.+|..|+-+...++.=+..|..+|++|+
T Consensus 16 ~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE 59 (134)
T PF08232_consen 16 FERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLE 59 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444455555555555555555555555555555554
No 353
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=63.59 E-value=31 Score=39.41 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++.-..|...++.||..+..|+..|+.++.+|+.|.+.||.++..
T Consensus 720 le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q 764 (961)
T KOG4673|consen 720 LEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQ 764 (961)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777777777777777777777777777777766643
No 354
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=63.59 E-value=34 Score=30.21 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
.|+.+++.|+.....|...+..++++++.+.....+|..
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 355
>PRK14163 heat shock protein GrpE; Provisional
Probab=63.56 E-value=24 Score=34.55 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=7.3
Q ss_pred hhhhhhhhcCC
Q 014660 402 GAKLHQLLDAS 412 (421)
Q Consensus 402 ~~kl~qll~~~ 412 (421)
.+.||+-|..-
T Consensus 143 DP~~HEAv~~~ 153 (214)
T PRK14163 143 DPTIHEALMHS 153 (214)
T ss_pred ChhHhceeeee
Confidence 46778877543
No 356
>PRK14147 heat shock protein GrpE; Provisional
Probab=63.53 E-value=25 Score=33.16 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=8.4
Q ss_pred hhhhhhhhcCCCc
Q 014660 402 GAKLHQLLDASPR 414 (421)
Q Consensus 402 ~~kl~qll~~~~r 414 (421)
.+.+|+-+..-+.
T Consensus 126 DP~~HeAv~~~~~ 138 (172)
T PRK14147 126 NPEHHQAISQGEA 138 (172)
T ss_pred ChHHhceeeeecC
Confidence 4677887765443
No 357
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=63.49 E-value=38 Score=32.58 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 317 DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 317 ~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+...++.++..++.++..++.+...++.++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 136 (322)
T TIGR01730 102 ADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTE 136 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCE
Confidence 33444555555555566666666666666665543
No 358
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=63.46 E-value=28 Score=29.70 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
..|+.|..-++.|++.|..|..+|..|-+.+++.+.|.++.
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888889999999999999988888888777665443
No 359
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.46 E-value=54 Score=38.64 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
..|..++..++++++.|+-+...||+++.+
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777777777777765
No 360
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.42 E-value=37 Score=29.81 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 317 DENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 317 ~EN~~L~~el~~L~e~~~~L~~E 339 (421)
.|+..|..++..++++...+..+
T Consensus 80 ~ei~~l~~~l~~l~~~~~~~~~~ 102 (108)
T PF06210_consen 80 QEIERLHRKLDALREKLGELLER 102 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455555555555544444333
No 361
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=63.36 E-value=44 Score=27.71 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENS--------------EKLRQENAALLEKLKSA 350 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~--------------~~L~~EN~~LkekL~~l 350 (421)
+..|+.+-+.+.-|+-.|++++..+++++ .+|..|...+|+.|..+
T Consensus 10 L~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 10 LSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 34455555556666666666666555554 34455555555555443
No 362
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=63.36 E-value=1.3e+02 Score=27.98 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 014660 330 SENSEKLRQENAALLE 345 (421)
Q Consensus 330 ~e~~~~L~~EN~~Lke 345 (421)
+.+..+|+.|...|++
T Consensus 79 r~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 79 RSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 363
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=63.34 E-value=77 Score=36.26 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDE 318 (421)
Q Consensus 305 leeLE~rVe~L~~E 318 (421)
.++|+.+.+.|+++
T Consensus 545 ~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 545 KKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 364
>PRK14141 heat shock protein GrpE; Provisional
Probab=63.17 E-value=23 Score=34.57 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=19.6
Q ss_pred hhhhhhhccCCCCccccccccccccccCCCchhhhhhhhcCCCcc
Q 014660 371 TENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQLLDASPRT 415 (421)
Q Consensus 371 ~e~lls~vd~~~~~~~~~~~~~~~~~~~~~~~~kl~qll~~~~r~ 415 (421)
...|++.+.+.+=..- +-.++ .-.+.||+-|..-+..
T Consensus 124 ~k~l~~vLek~GV~~I--~~~Ge------~FDP~~HEAv~~~~~~ 160 (209)
T PRK14141 124 ERAMLNALERHGVKKL--DPEGQ------KFDPNFHQAMFEVPNP 160 (209)
T ss_pred HHHHHHHHHHCCCEEE--CCCCC------CCChHHhceeeeecCC
Confidence 4566677766654411 11111 1357788877655443
No 365
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=63.16 E-value=73 Score=28.90 Aligned_cols=46 Identities=11% Similarity=0.309 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
++++.|..++++..+-....++++..+++....+..+...+...+.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444555544444444444444444444444444444444333
No 366
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=63.12 E-value=24 Score=28.18 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
++||+.++..|+.|...++.++..-+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777666666655443
No 367
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=63.11 E-value=68 Score=38.19 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=13.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014660 285 RRKQSNRESARRSRLRKQAEAEELSR 310 (421)
Q Consensus 285 RRk~sNRESARRSRlRKqa~leeLE~ 310 (421)
+++..-|++..+--.++..++.+|+.
T Consensus 699 ~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 699 RELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555556666655
No 368
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=62.95 E-value=54 Score=41.31 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=52.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 287 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 287 k~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+.-.+.+++++.-=++.+..++.|++.|++|+.+|+..+..+......++.|...+.++|..+
T Consensus 1644 lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~ 1707 (1930)
T KOG0161|consen 1644 LQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNEL 1707 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3446788888888888888888899999999999998888888888888888877777777664
No 369
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=62.81 E-value=1.4e+02 Score=29.39 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
..|+..+..++++...+...+..|+..+..|+.....|+.++..+
T Consensus 95 ~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l 139 (225)
T COG1842 95 QSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL 139 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555443
No 370
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.50 E-value=88 Score=35.66 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~ 341 (421)
++.+|+++.+.|+..-..|.++++++.++.+.|.....
T Consensus 580 ~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 580 ELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333
No 371
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=62.48 E-value=1.1e+02 Score=28.55 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=33.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSE-INQLS 330 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~e-l~~L~ 330 (421)
+|+.+...+-+.|.+.+..=.+...+.+.++..-+.+-..++.+ ..++.
T Consensus 41 ~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~ 90 (155)
T PRK06569 41 NRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLE 90 (155)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888877776666666777776666666666665 34443
No 372
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.26 E-value=38 Score=37.44 Aligned_cols=10 Identities=20% Similarity=0.312 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 014660 306 EELSRKVDSL 315 (421)
Q Consensus 306 eeLE~rVe~L 315 (421)
++|+.++..+
T Consensus 212 ~~le~el~~l 221 (650)
T TIGR03185 212 EALEAELKEQ 221 (650)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 373
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.22 E-value=44 Score=37.19 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el 326 (421)
.+.+|++-|.+.+.|+++|..|+..|
T Consensus 299 l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666654
No 374
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=62.21 E-value=24 Score=37.12 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
-.|+++-..|++||..|+.|+++|+++.
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555554443
No 375
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=62.17 E-value=1e+02 Score=26.42 Aligned_cols=8 Identities=38% Similarity=0.621 Sum_probs=3.2
Q ss_pred hhhhhhhc
Q 014660 371 TENLLSRV 378 (421)
Q Consensus 371 ~e~lls~v 378 (421)
.+.||..|
T Consensus 110 Y~~fL~~v 117 (126)
T PF13863_consen 110 YEEFLEKV 117 (126)
T ss_pred HHHHHHHh
Confidence 34444333
No 376
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=62.16 E-value=34 Score=37.29 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
|+..++.+..++..|++...+++.++..++.++..|..+-+.|+.+|.
T Consensus 444 k~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE 491 (507)
T PF05600_consen 444 KLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIE 491 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333445556666666666666666666666666666666666666554
No 377
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.04 E-value=67 Score=38.81 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
+..+.++++.+++.+...|..++.+++++++.+...|..+
T Consensus 495 ~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 495 EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444
No 378
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=62.02 E-value=63 Score=30.92 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 014660 335 KLRQENAALLEKLKS 349 (421)
Q Consensus 335 ~L~~EN~~LkekL~~ 349 (421)
.++.+..+|+++|+.
T Consensus 157 e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 157 ELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444445544443
No 379
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=61.88 E-value=1.1e+02 Score=31.43 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+..+..+-+.|..+-..|+.++..|+++...+-.+..+||++..++
T Consensus 36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ei 81 (294)
T COG1340 36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEI 81 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555443
No 380
>PHA03161 hypothetical protein; Provisional
Probab=61.70 E-value=38 Score=31.71 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
|.+-|+.+..|+. .+|+..|..|..+.....+|++.|..-..+-......|..++.++
T Consensus 44 ~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eL 101 (150)
T PHA03161 44 KKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILEL 101 (150)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 3344444444433 667777777777777777777766543333333333444444333
No 381
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=61.61 E-value=56 Score=34.59 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
|..+...|++++..|+.+...|.+++.
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444443
No 382
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=61.60 E-value=41 Score=31.96 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=18.7
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEEL-------SRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 301 Kqa~leeL-------E~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
.+..+++| ..++++....|..|..+|.+|+..+..|
T Consensus 72 EqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 72 EQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456664 4444555555555555555555544443
No 383
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=61.47 E-value=73 Score=29.89 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKS 324 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~ 324 (421)
.|+||..-.+-+.++++|..+|...-.+...|..
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777665554444444443
No 384
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=61.42 E-value=34 Score=36.91 Aligned_cols=63 Identities=25% Similarity=0.264 Sum_probs=40.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 289 SNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN----------QLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 289 sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~----------~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++|+-|.-|-+-+-..+-+++.++..|+.+...|++-|+ +|++++...+.+..+|+++...++
T Consensus 399 kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls 471 (486)
T KOG2185|consen 399 KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALS 471 (486)
T ss_pred hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666555555666777777777777777766553 456666666666666666666554
No 385
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=61.41 E-value=19 Score=31.30 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+..++.+|++++.+|+.||..||.-+.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555566666666654
No 386
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.32 E-value=43 Score=29.78 Aligned_cols=50 Identities=28% Similarity=0.372 Sum_probs=28.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
=+..|+.-|++. +-++.+++++..++..+-.+-..|..+...+..++..+
T Consensus 39 l~~~n~~lAe~n-L~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 39 LLAENEELAEQN-LSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666644 33356666666666666666666666666666655555
No 387
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=61.31 E-value=59 Score=32.95 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 277 NERELKRERRKQSNRESARRSRLRKQAEAE-ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 277 dErE~KR~RRk~sNRESARRSRlRKqa~le-eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.|++.|-.-|++..+.---+|-+|-|...- +|+...++-..-..+|+.++.+|+++-.+......-||++|.
T Consensus 10 ~eed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~A 82 (277)
T PF15030_consen 10 SEEDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLA 82 (277)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHH
Confidence 456667677777777777777777776655 555555544444455555555555554444444444444443
No 388
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=61.18 E-value=77 Score=37.71 Aligned_cols=13 Identities=8% Similarity=0.414 Sum_probs=5.9
Q ss_pred hhhhhhccCCCCc
Q 014660 372 ENLLSRVNNSGTV 384 (421)
Q Consensus 372 e~lls~vd~~~~~ 384 (421)
-.|..+||.....
T Consensus 549 s~l~~kld~~~~~ 561 (1041)
T KOG0243|consen 549 SSLFEKLDRKDRL 561 (1041)
T ss_pred HHHHHHhhhhhcc
Confidence 3444555544433
No 389
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.11 E-value=53 Score=36.60 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++++++|+.+++.|..+...|..++..++.++.++..|...++.++..+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555544443
No 390
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=61.00 E-value=47 Score=30.02 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
-..++.+|+.++..|+.|-..=-++++.|-.++.+|+.++..|++-|.-+
T Consensus 12 He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~L 61 (120)
T PF10482_consen 12 HEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVL 61 (120)
T ss_pred HHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 34456667777777766665555566666666666666666666666554
No 391
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=60.92 E-value=28 Score=30.13 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
+.+++.+--.|++.|.+|..++..|.++
T Consensus 19 L~~v~~~~l~l~~~n~el~~el~~l~~~ 46 (106)
T PF05837_consen 19 LSDVEKKRLRLKRRNQELAQELLELAEK 46 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 392
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=60.81 E-value=60 Score=26.00 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+++++..++.+...+.+++..|......++.+...|..+|..+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443
No 393
>PRK14153 heat shock protein GrpE; Provisional
Probab=60.75 E-value=26 Score=33.80 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=8.1
Q ss_pred hhhhhhhhcCCCc
Q 014660 402 GAKLHQLLDASPR 414 (421)
Q Consensus 402 ~~kl~qll~~~~r 414 (421)
.+.||+-+..-+.
T Consensus 143 DP~~HEAv~~~~~ 155 (194)
T PRK14153 143 DPHRHEAMMHVET 155 (194)
T ss_pred ChhHhceeeeeCC
Confidence 4667877765443
No 394
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=60.69 E-value=83 Score=28.03 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+.++.++.....++.+......|-.-=.+..+++...+.||..|+..|..-
T Consensus 10 ~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG 61 (125)
T PF03245_consen 10 DQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAG 61 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcC
Confidence 3334444444444444444444444434456677777788999999998763
No 395
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=60.66 E-value=69 Score=40.16 Aligned_cols=74 Identities=30% Similarity=0.325 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 277 NERELKRERRKQSN-RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 277 dErE~KR~RRk~sN-RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
=++++.+.|+++.+ +.-.|+.+.-+...+.++..+|+.|..++..+...+..++..+..|+.+...|..+|+..
T Consensus 810 L~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~ 884 (1822)
T KOG4674|consen 810 LERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSA 884 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677777666 555677777778888999999999999999999999999999999999999998888764
No 396
>PF15556 Zwint: ZW10 interactor
Probab=60.65 E-value=1.2e+02 Score=30.23 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=51.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 289 SNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 289 sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+-+++..+.|.-.+++.-.-+..+..|..-..+++.+....++++..|..|...|+.+...-
T Consensus 113 KKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qe 174 (252)
T PF15556_consen 113 KKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQAGQE 174 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888788888888888888888888888888888888888888887654
No 397
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=60.64 E-value=70 Score=29.57 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKS---EINQLSENSEKLRQENA 341 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~---el~~L~e~~~~L~~EN~ 341 (421)
++++.|+.++.....+...|+. -+..|+.++..|..+|.
T Consensus 27 ~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 27 EERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444 33444444444444444
No 398
>PRK01156 chromosome segregation protein; Provisional
Probab=60.50 E-value=75 Score=36.17 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.4
Q ss_pred hhhhhc
Q 014660 373 NLLSRV 378 (421)
Q Consensus 373 ~lls~v 378 (421)
.++..+
T Consensus 768 e~~~~~ 773 (895)
T PRK01156 768 KYLFEF 773 (895)
T ss_pred HHHHHh
Confidence 344334
No 399
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.16 E-value=49 Score=34.90 Aligned_cols=65 Identities=25% Similarity=0.352 Sum_probs=34.7
Q ss_pred HHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 286 RKQSNRESARRSR---LRKQAEAEELSRKVDSLIDENASLKS-------EINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 286 Rk~sNRESARRSR---lRKqa~leeLE~rVe~L~~EN~~L~~-------el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+..-|-|--|.-| +.+|.+.++|..+-+.|..+.-..+. +...|+.-...++.||+.|..+|..+
T Consensus 79 k~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 79 KITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3334444444333 34444555555444444444333222 23455566677788888888888775
No 400
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=60.04 E-value=41 Score=31.71 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSE-KLRQENAALLEKLKS 349 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~-~L~~EN~~LkekL~~ 349 (421)
.++++|+.+++.|......+.+++..+++++. .++.+...|++++.+
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~e 126 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNE 126 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHH
Confidence 45667777777777776666666666655542 223334444444443
No 401
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=59.99 E-value=27 Score=34.02 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
+|..++..++.|+..|++=|..-+++|..|..
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKR 79 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKR 79 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666655555555543
No 402
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=59.93 E-value=57 Score=37.21 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 354 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~ 354 (421)
..=+.++...=|.+++..+.++++++.....+..++..++....+|+.|+..|+.+|..++...
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3345566666778888888999999999999999999999999999999999999998876443
No 403
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=59.90 E-value=89 Score=27.78 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
++....+-.+=.+..-.++.+++.++.+...+..++..|..+|..+..+
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~ 84 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQ 84 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333333333333444444444444444444444444444444443
No 404
>PRK09343 prefoldin subunit beta; Provisional
Probab=59.81 E-value=47 Score=29.34 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
..|..+++.+..++..|+.+...|+.++.++
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~ 104 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKEL 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555544
No 405
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.79 E-value=93 Score=35.46 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+.+|+.+...|+.....|.++++.+....+.|..+++.
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443
No 406
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=59.60 E-value=61 Score=27.28 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
.+|..++...+.|+..|..-+..|+.++.+...-|..|..++..++.
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666666666666666666666665553
No 407
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=59.57 E-value=24 Score=36.03 Aligned_cols=48 Identities=29% Similarity=0.347 Sum_probs=36.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 288 QSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 288 ~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
+-|.|+-+.+ -+.+|+.|..+|..|+..|..|+++|+..++.++.|+.
T Consensus 66 ~y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 66 IYNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4456655444 46788899999999999999999999888887776653
No 408
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=59.57 E-value=28 Score=35.10 Aligned_cols=39 Identities=41% Similarity=0.544 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHh-hccccccccc
Q 014660 322 LKSEINQLSENS---EKLRQENAALLEKLKSA-QLGNKQEIVL 360 (421)
Q Consensus 322 L~~el~~L~e~~---~~L~~EN~~LkekL~~l-ql~~~~E~~~ 360 (421)
|.++|..|.+.. ..|..+-..|..-|.+- ..|.-+|+++
T Consensus 36 L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~L 78 (304)
T PF02646_consen 36 LKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQL 78 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 444444444444 55555555555555542 2455555544
No 409
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=59.54 E-value=58 Score=34.40 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKS-------------EINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~-------------el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+...++...+-++++++|..+++.|++....|.. .+..+.+.+..|..+...|++++..++
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 410
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=59.40 E-value=19 Score=32.31 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
+++|-|..++.+|+..|..|++|...|+
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554
No 411
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=59.25 E-value=90 Score=30.78 Aligned_cols=37 Identities=35% Similarity=0.445 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 315 LIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 315 L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|..+...+..++..|.+.......|...|+.+|...+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar 116 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAR 116 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555566666666777777776654
No 412
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=59.20 E-value=21 Score=36.22 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|+.++++|+.+...++.++. .++.|...|+++|..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKI-------RLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 33444444444444444444 44445555555555543
No 413
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=59.08 E-value=14 Score=33.25 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 326 INQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 326 l~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+++|..++.+|+.||..||.+|..-
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5677777888889999999999753
No 414
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=59.06 E-value=58 Score=36.83 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
+..|..++..|+++...|..++..+.+++..+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~ 274 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEA 274 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443333
No 415
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=58.99 E-value=68 Score=31.91 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=8.4
Q ss_pred hhhhhhhccCC
Q 014660 371 TENLLSRVNNS 381 (421)
Q Consensus 371 ~e~lls~vd~~ 381 (421)
+.-||++.|+.
T Consensus 196 CGA~Ls~~D~d 206 (254)
T PF03194_consen 196 CGAFLSVGDND 206 (254)
T ss_pred hhhHHhccchH
Confidence 66888888874
No 416
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=58.79 E-value=1.2e+02 Score=30.99 Aligned_cols=70 Identities=27% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------
Q 014660 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSEN---------------------------- 332 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~---------------------------- 332 (421)
.|+.--.++.++..+.-+.|=..--+.||.-+..|..+|..|..+...+..+
T Consensus 49 ~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~ 128 (309)
T PF09728_consen 49 QKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSE 128 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q ss_pred -HHHHHHHHHHHHHHHHHh
Q 014660 333 -SEKLRQENAALLEKLKSA 350 (421)
Q Consensus 333 -~~~L~~EN~~LkekL~~l 350 (421)
+.++..||..|+++|+.+
T Consensus 129 ~~~k~~~eN~~L~eKlK~l 147 (309)
T PF09728_consen 129 RNIKLREENEELREKLKSL 147 (309)
T ss_pred hhHHHHHHHHHHHHHHHHH
No 417
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=58.77 E-value=70 Score=32.93 Aligned_cols=70 Identities=26% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 279 RELKRERRKQSNRESARRSRLRKQAEAEELS-------RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 279 rE~KR~RRk~sNRESARRSRlRKqa~leeLE-------~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+.+.+..-++.+-+--++-|..||=+||-|| ++|+.-+.+...|..|+..|.+.|+.|+.....|-..|+
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq 91 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQ 91 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHh
No 418
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.61 E-value=37 Score=33.77 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 295 RRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
-+.|.-+|..++.+++-+..++.+...|..++..+..+.+.. +..||.++...+
T Consensus 155 lk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf~ 208 (243)
T cd07666 155 IKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERWK 208 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344456666666666666666666666777777766655544 555666666554
No 419
>PF14282 FlxA: FlxA-like protein
Probab=58.58 E-value=45 Score=28.85 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 305 AEELSRKVDSLIDENASLKS----EINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~----el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++.|+.++..|..+...|.. -.....++...|..+...|..+|..++
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 112333444444444555555554443
No 420
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=58.33 E-value=1.5e+02 Score=26.98 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=44.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 014660 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS---------ENSEKLRQENAALLEKLK 348 (421)
Q Consensus 284 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~---------e~~~~L~~EN~~LkekL~ 348 (421)
+--++-|.|.||-.++|.++ +.++.++..|..-...+...+..|. .++..|..+...++.+|.
T Consensus 35 e~q~L~~kE~~r~~~~k~~a--e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~ 106 (126)
T PF09403_consen 35 EYQQLEQKEEARYNEEKQEA--EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLD 106 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688888888877776 5788888888777777777666654 456777777777766664
No 421
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=58.27 E-value=79 Score=31.94 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 295 RRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
+.-..+-..++..|+.+|+.|.++......+++.|.
T Consensus 73 qe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 73 QEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556677888888888888888888887775
No 422
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.23 E-value=84 Score=37.94 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.+++..+..|+..+..++.|..+..+++..++.+...|......|++++.+
T Consensus 538 ~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE 588 (1293)
T KOG0996|consen 538 KEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEE 588 (1293)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333334444444433
No 423
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=58.22 E-value=74 Score=26.65 Aligned_cols=46 Identities=24% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKL----RQENAALLEKL 347 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L----~~EN~~LkekL 347 (421)
+...++++.++..--+|.+.++..|-.|.....++ +.|...||.+|
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 424
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=57.95 E-value=91 Score=30.27 Aligned_cols=65 Identities=25% Similarity=0.394 Sum_probs=43.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 283 RERRKQSNRESARRSRLRKQAEAEELSRK--------------VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 283 R~RRk~sNRESARRSRlRKqa~leeLE~r--------------Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+.-|++.+-..|-.+|-||- +.+|+.+ +.-|+.|-..|+.+|..-+.....++.|+..|..+|.
T Consensus 95 ~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~ 172 (192)
T PF09727_consen 95 KMQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLE 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555556666553 3344331 3468888888888888888888888888888777776
Q ss_pred H
Q 014660 349 S 349 (421)
Q Consensus 349 ~ 349 (421)
+
T Consensus 173 e 173 (192)
T PF09727_consen 173 E 173 (192)
T ss_pred H
Confidence 4
No 425
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=57.87 E-value=44 Score=38.07 Aligned_cols=74 Identities=24% Similarity=0.325 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc-cccCCCCcchhhhhhhcc
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLN-EDKRVTPVSTENLLSRVN 379 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~~~-~~~~~~p~~~e~lls~vd 379 (421)
+.-...++.|..+|..|.+++..-..+...+......|+.++.+++-.-.++..-+ ++-..-..+.++|+.-|+
T Consensus 604 Enk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~Eve 678 (786)
T PF05483_consen 604 ENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVE 678 (786)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34455556677777777777777666677777777777777776654333333222 222222334566665544
No 426
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=57.76 E-value=53 Score=27.90 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 314 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.|+.....|..++..+..+...+..+...|+.+|..+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555666666666544
No 427
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=57.75 E-value=17 Score=36.83 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
.+++.|+.+...++.|...+.+++..+++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIE 37 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888887553
No 428
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=57.62 E-value=1.3e+02 Score=26.34 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014660 313 DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 353 (421)
Q Consensus 313 e~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~ 353 (421)
..+-.....|..+++.+..+++.|..+|..|++++..++-+
T Consensus 46 ~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 46 KNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444555566666666666666666666666666666544
No 429
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.62 E-value=67 Score=38.69 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~ 327 (421)
++.+..|.++...|+.+....+.++.
T Consensus 404 ~E~lK~~~~k~kKleke~ek~~~~~~ 429 (1293)
T KOG0996|consen 404 EEKLKRLTSKIKKLEKEIEKARRKKS 429 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444444444444444444333
No 430
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=57.55 E-value=20 Score=30.02 Aligned_cols=17 Identities=47% Similarity=0.683 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014660 314 SLIDENASLKSEINQLS 330 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~ 330 (421)
.|.+||..|+.+|..|.
T Consensus 4 ei~eEn~~Lk~eiqkle 20 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLE 20 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555544443
No 431
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=57.51 E-value=71 Score=37.96 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=3.6
Q ss_pred CCCCCCc
Q 014660 157 EQRPSQS 163 (421)
Q Consensus 157 ~~~~SqS 163 (421)
|+..|-|
T Consensus 260 N~~SSRS 266 (1041)
T KOG0243|consen 260 NDQSSRS 266 (1041)
T ss_pred hhhcccc
Confidence 5555554
No 432
>PRK14144 heat shock protein GrpE; Provisional
Probab=57.45 E-value=43 Score=32.54 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=9.1
Q ss_pred hhhhhhhhcCCCcc
Q 014660 402 GAKLHQLLDASPRT 415 (421)
Q Consensus 402 ~~kl~qll~~~~r~ 415 (421)
.+.||+-+..-+..
T Consensus 154 DP~~HEAv~~~~~~ 167 (199)
T PRK14144 154 DPQQHEAMSMQPAP 167 (199)
T ss_pred ChhHhceeeeeCCC
Confidence 47788888654443
No 433
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.44 E-value=28 Score=35.55 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 295 RRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|..-.+-++.+++.+.+++.++.+...|..++..|+.+++....|...|..++...+
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 434
>PRK10963 hypothetical protein; Provisional
Probab=57.23 E-value=31 Score=33.28 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=15.7
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLI---DENASLKSEINQLSENS 333 (421)
Q Consensus 306 eeLE~rVe~L~---~EN~~L~~el~~L~e~~ 333 (421)
.+|+.++.+|- .+|..+-.++.+|.-++
T Consensus 54 ~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 54 HVLEEEMTLLMEQAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 36777777776666544
No 435
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=57.18 E-value=64 Score=28.11 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 327 NQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 327 ~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
..-+.+...++..|..|+.+|.+.+
T Consensus 40 a~ar~e~~~~e~k~~~le~~l~e~~ 64 (100)
T PF06428_consen 40 ADARRERAALEEKNEQLEKQLKEKE 64 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677777888888777643
No 436
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=57.16 E-value=53 Score=32.04 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
|..+|+++..|++-...-.+...+|+
T Consensus 53 L~kvEeEI~TLrqVLaAKerH~~ELK 78 (208)
T KOG4010|consen 53 LAKVEEEIVTLRQVLAAKERHAAELK 78 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333333
No 437
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=57.11 E-value=58 Score=33.36 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 354 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~ 354 (421)
+|+=.||-+.+...-|-..|+.++..|+.....++.+.+..|++|.-++..-
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglrep~ 115 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLREPV 115 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4555566777777777777888888888777777777777777777665443
No 438
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=57.08 E-value=51 Score=30.56 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 276 qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
+|-++++.+|.+..+|. .+|++||.+|..+... +..|.+++..++.
T Consensus 1 q~~~~Le~ek~~~~~rI------~~K~~~LqEL~~Q~va-----------~knLv~RN~~~~~ 46 (142)
T PF08781_consen 1 QECEELEEEKQRRRERI------KKKKEQLQELILQQVA-----------FKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhh
No 439
>PLN02320 seryl-tRNA synthetase
Probab=56.99 E-value=26 Score=38.30 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
|..+|..|.+-...+++...++|..++..|+.+...|..++..+.+++..+..
T Consensus 113 r~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 113 RAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 440
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=56.95 E-value=1.1e+02 Score=34.62 Aligned_cols=13 Identities=15% Similarity=0.220 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q 014660 338 QENAALLEKLKSA 350 (421)
Q Consensus 338 ~EN~~LkekL~~l 350 (421)
.+++.|..+|.++
T Consensus 300 ~~r~kL~N~i~eL 312 (670)
T KOG0239|consen 300 EERRKLHNEILEL 312 (670)
T ss_pred HHHHHHHHHHHHh
Confidence 4555555555543
No 441
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=56.88 E-value=75 Score=28.07 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
.+-.++++++.|.-.|+.|.+++..|+.++
T Consensus 41 ~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 41 ALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555433
No 442
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=56.87 E-value=55 Score=33.37 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+|.+++..|..++..|.++...|++.+.++
T Consensus 230 srLEdkv~~lk~~n~~L~~~l~~l~~~v~e~ 260 (279)
T KOG0837|consen 230 SRLEDKVKTLKIYNRDLASELSKLKEQVAEL 260 (279)
T ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555443
No 443
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=56.78 E-value=60 Score=32.96 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 014660 336 LRQENAALLEKLK 348 (421)
Q Consensus 336 L~~EN~~LkekL~ 348 (421)
|+.++..|+.+|+
T Consensus 214 lr~~~~~l~~el~ 226 (264)
T PF07246_consen 214 LRNESKWLEHELS 226 (264)
T ss_pred hHHHHHHHHHHHH
Confidence 3334444444443
No 444
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.72 E-value=63 Score=38.79 Aligned_cols=44 Identities=18% Similarity=0.143 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
....|+.+++.|..++..|+.++..+.+++..|..+...+..++
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEK 925 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33455555555555555555555555444444444444444433
No 445
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=56.53 E-value=40 Score=34.26 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=10.7
Q ss_pred cccCCCCCCCCCCCCCCCCCC
Q 014660 86 GVYAHPAVPLGSHAHNHGVPT 106 (421)
Q Consensus 86 gvYaHP~~p~g~~p~~~~~~~ 106 (421)
|.|.-|-||+|.-|-+..+|+
T Consensus 182 g~~~pp~mpi~~g~p~~~p~p 202 (341)
T KOG2893|consen 182 GAYPPPRMPIGHGPPGGPPMP 202 (341)
T ss_pred CCCCCCcCcCCCCCCCCCCCC
Confidence 356666666654444333333
No 446
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=56.40 E-value=10 Score=41.20 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el 326 (421)
++|+|++|+++|+++...|.+++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 44444444444444444333333
No 447
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.40 E-value=1.4e+02 Score=27.16 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=30.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+...||.+.-|...--.++-++.++.++ .+.+-..++..+.++......+..-...|..+|..++
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~~------i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISKQ------IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666665555444444433322 2233334444444444444444444555555554443
No 448
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.28 E-value=96 Score=37.07 Aligned_cols=56 Identities=29% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 292 ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 292 ESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+.|+......++.+..++.+...++.+......++..++.+..+++.+...|...|
T Consensus 479 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 479 EQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444445555555555555555555555555555555555555555555544
No 449
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=56.26 E-value=83 Score=32.46 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCcch
Q 014660 299 LRKQAEAEELSRKVDSLID-------ENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVST 371 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~-------EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~~~~~~~~~p~~~ 371 (421)
+|||.++|.+.+|++.|.. |.....++|..|-+.|-.--.-...|+.+|..... .+.+-..+.+...++.+
T Consensus 143 errk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~r--se~~rqeeaensm~~i~ 220 (338)
T KOG3647|consen 143 ERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTR--SEPIRQEEAENSMPFIP 220 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh--hhHHHHHHHHhcchhhH
Q ss_pred hhhhhhccCCCCccccccccccccccCCCchhhhhh
Q 014660 372 ENLLSRVNNSGTVDRNMEEGGHLFEKNSNSGAKLHQ 407 (421)
Q Consensus 372 e~lls~vd~~~~~~~~~~~~~~~~~~~~~~~~kl~q 407 (421)
+.|..-=+.....+-.-.++.|+-.-.-.-.-++-|
T Consensus 221 ekl~ee~~~~d~~g~~DD~d~D~~~~D~rds~~~~~ 256 (338)
T KOG3647|consen 221 EKLIEEDDDDDDEGDLDDEDLDSEIPDIRDSDKLMQ 256 (338)
T ss_pred HHhhhhhhhccccccccccccCCCCCchhhHHHHHH
No 450
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=56.12 E-value=1.1e+02 Score=28.78 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 014660 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE----KLRQENAALLEKLK 348 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~----~L~~EN~~LkekL~ 348 (421)
|.|-|.....++..|+..++.=+.--..|-.++.+|+++-+ +...+...-...|.
T Consensus 76 A~RQ~q~q~~rV~~Lqd~~~~hksa~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~ 134 (152)
T PF15186_consen 76 AARQRQLQARRVQWLQDQAEEHKSAAWALASELKRLREQREMERKEAAFQLQLTQAALQ 134 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556677777777777777777777777776654 44444444444443
No 451
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=56.12 E-value=33 Score=36.66 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCCCCccccC
Q 014660 46 PPYYNSPIASGHAPQPYMWGP 66 (421)
Q Consensus 46 pp~f~s~vas~p~phPYMWG~ 66 (421)
|+||........++.|++|+.
T Consensus 398 p~~~~~~~~~~~~~~p~~~~~ 418 (562)
T TIGR01628 398 PPYYGQGPQQQFNGQPLGWPR 418 (562)
T ss_pred CCccCCCCcccCCCCCCCCCC
Confidence 344433332223345677764
No 452
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=56.05 E-value=76 Score=30.74 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
|+..-.--...+++.+.++..++.+......++..+..++..|+.+...+...|+.++.
T Consensus 104 a~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 104 AKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhh
No 453
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.01 E-value=37 Score=39.40 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+|+++|...+..|+....+|--+++.+++....|..||..|.+++++.
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666654
No 454
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.95 E-value=1e+02 Score=33.99 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=9.9
Q ss_pred CCCCccccCCCCCCCCCCC
Q 014660 58 APQPYMWGPAQPMMPPYGA 76 (421)
Q Consensus 58 ~phPYMWG~~qpmmpPYGt 76 (421)
++-+=.+|.-|-=--+||+
T Consensus 47 taTt~~fG~~~~g~~~fG~ 65 (508)
T KOG3091|consen 47 TATTGLFGANQAGGTGFGT 65 (508)
T ss_pred CccccccccccCCCCCccC
Confidence 3445555655554455555
No 455
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=55.93 E-value=55 Score=28.12 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 325 EINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 325 el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
++..+......|+.+...|+.++.
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 456
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=55.92 E-value=79 Score=25.09 Aligned_cols=46 Identities=28% Similarity=0.256 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLK-SEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~-~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
..+++.+.-+.+|+-|...+- ..-..+..++...+.+...|+.+|.
T Consensus 32 ~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 32 RDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444455544444332 2334455555555666666666554
No 457
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=55.89 E-value=32 Score=38.58 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.+++|.-+-+.|+-|+..-+.--..|++++.+|+.|...+|+++...
T Consensus 329 akVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 329 AKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777766666666666666666666666666666554
No 458
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=55.84 E-value=84 Score=37.43 Aligned_cols=69 Identities=25% Similarity=0.137 Sum_probs=48.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 283 RERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 283 R~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
-.+-.+.||+--..--+++-..++++-.+.-.|+.++..|..+++.|.+++.++..++..|...-++++
T Consensus 374 alkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~ 442 (1195)
T KOG4643|consen 374 ALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQ 442 (1195)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777766666666666777777777777777777777777777777777777766666655543
No 459
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=55.83 E-value=1.8e+02 Score=27.23 Aligned_cols=45 Identities=9% Similarity=0.150 Sum_probs=33.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el 326 (421)
+|+.+....-+.|.+.+..-++..++.+.++...+.|-..+..+.
T Consensus 62 ~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 62 ERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667778888888888888888888888887777766655
No 460
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=55.74 E-value=75 Score=37.78 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
-.+.+...|.++++|+......-.+...|...+..++.++..+.+++..|+.++.++
T Consensus 409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 409 TKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666655554
No 461
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.71 E-value=52 Score=27.93 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENA 341 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~ 341 (421)
..|+.+++.|+.+...|..++..+..++..++.+..
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~ 101 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 462
>PRK14145 heat shock protein GrpE; Provisional
Probab=55.53 E-value=54 Score=31.76 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=8.0
Q ss_pred hhhhhhhhcCCCc
Q 014660 402 GAKLHQLLDASPR 414 (421)
Q Consensus 402 ~~kl~qll~~~~r 414 (421)
.+.+|+-+..-+.
T Consensus 152 DP~~HEAv~~~~~ 164 (196)
T PRK14145 152 DPYKHHAVMQEEV 164 (196)
T ss_pred CchhhheeeeeCC
Confidence 4667777765443
No 463
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=55.43 E-value=39 Score=28.03 Aligned_cols=26 Identities=38% Similarity=0.621 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
++.|+.+.+.|+.||..|+-|+..|.
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666666666666666666666654
No 464
>PHA03155 hypothetical protein; Provisional
Probab=55.41 E-value=15 Score=32.89 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 326 INQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 326 l~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+++|..++.+|+.||..||.+|..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777777788899999999864
No 465
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=55.37 E-value=20 Score=34.72 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.|+.++..|+.++..|..|+..|+.++..
T Consensus 116 ~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~ 144 (198)
T KOG0483|consen 116 SLKRQLESLRSENDRLQSEVQELVAELSS 144 (198)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Confidence 34444444444444444455555555444
No 466
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=55.37 E-value=35 Score=34.39 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~ 327 (421)
+++.+..+++.|++||.+|++.+.
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 556666666666666666665544
No 467
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=55.24 E-value=33 Score=30.91 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 314 SLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.|+.....|.-++..|+.+-+.++.+...|+++|.
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 468
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=55.20 E-value=73 Score=38.01 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=5.0
Q ss_pred hhhhhHHHHH
Q 014660 274 WIQNERELKR 283 (421)
Q Consensus 274 ~~qdErE~KR 283 (421)
|..+|.+++.
T Consensus 598 ~~~~ee~L~~ 607 (1201)
T PF12128_consen 598 YAASEEELRE 607 (1201)
T ss_pred hhcChHHHHH
Confidence 4455555544
No 469
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=55.14 E-value=1.4e+02 Score=25.82 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 354 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~ 354 (421)
-.++.+|..+...-.. +..+..++..++.++..-+.....++.-++.+=++.
T Consensus 37 ~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gS 88 (106)
T PF05837_consen 37 AQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVMKNVFQALIVGS 88 (106)
T ss_pred HHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444433333333 456777777777777777777777777776654443
No 470
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=55.12 E-value=1.7e+02 Score=28.93 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
...+..+..+++.|+.++..+.+++.++.
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 162 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQ 162 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666655555444
No 471
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=54.97 E-value=70 Score=27.39 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.+++|..+|..|..+...|...+..++........|-.+--++|.+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5666777777777777777777776666665555555554445443
No 472
>PHA03162 hypothetical protein; Provisional
Probab=54.83 E-value=16 Score=33.51 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 326 INQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 326 l~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+++|..++.+|+.||..||.+|..-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777788888999999999643
No 473
>PF13879 KIAA1430: KIAA1430 homologue
Probab=54.73 E-value=68 Score=26.21 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLS-----------------------ENSEKLRQENAALLEKLK 348 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~-----------------------e~~~~L~~EN~~LkekL~ 348 (421)
+++.+.+.||..|..++.... .+..++..||..|..+|+
T Consensus 36 er~~~I~reN~~LL~ki~~I~~~~~~~~~~~~~~~~~~n~~~R~~e~~kI~~EN~~l~~RL~ 97 (98)
T PF13879_consen 36 ERQREIERENQILLRKIMEIMRKPGSIDCWNPYRPKSLNAINRKREQRKIDRENQKLLKRLQ 97 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 667777778888888776443 345667777887777764
No 474
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=54.61 E-value=2e+02 Score=27.56 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 277 NERELKRERRKQSNRESARRSRLRK-QAEAEELSRKVDSLID--------ENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 277 dErE~KR~RRk~sNRESARRSRlRK-qa~leeLE~rVe~L~~--------EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+-+-+|.+-|+..+++.+-.-++|+ ..++..+..++..|+. |-..|..+|..+..++..-...+..|..+|
T Consensus 69 Evr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l 148 (194)
T PF15619_consen 69 EVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444444432 2334444444444433 223344444444444444444444444443
No 475
>PRK14160 heat shock protein GrpE; Provisional
Probab=54.52 E-value=37 Score=33.19 Aligned_cols=11 Identities=18% Similarity=0.235 Sum_probs=6.0
Q ss_pred hhhhhhhhcCC
Q 014660 402 GAKLHQLLDAS 412 (421)
Q Consensus 402 ~~kl~qll~~~ 412 (421)
.+.||+-+..-
T Consensus 167 DP~~HEAv~~~ 177 (211)
T PRK14160 167 DPNLHNAVMHV 177 (211)
T ss_pred ChHHhceeeee
Confidence 35666655443
No 476
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=54.29 E-value=56 Score=34.51 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 279 RELKRERRKQSNRESARRSRLRKQAE--AEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 279 rE~KR~RRk~sNRESARRSRlRKqa~--leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
...-..-|.++|..|..--.++++.+ +++|..++..|+++...|..++..+.+++..+...
T Consensus 43 ~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 43 LSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 477
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=54.23 E-value=11 Score=33.98 Aligned_cols=64 Identities=27% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCcchhhhhhhccC
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNN 380 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~~~~~~~~~p~~~e~lls~vd~ 380 (421)
...+++|+.+++.|+.+...|..++.++..+++.++......++.+....... -...||..+|+
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~---------------~~~~ll~v~D~ 73 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEK---------------FLKDLLPVLDN 73 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---------------HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
No 478
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=54.17 E-value=57 Score=34.10 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSE----------INQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~e----------l~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.++++.|+.+++.|+.+...|..+ +..+.+++.+++.+...+++-++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
No 479
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=54.12 E-value=24 Score=37.95 Aligned_cols=77 Identities=22% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCCCchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 268 VLPPETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 268 ~v~~e~~~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.+.-++--+.|+.+|-.|.|++ |-+++..+..+.+|-.+.++|.++.-++++++.|.++.-.-+
T Consensus 66 p~q~~~~~lnEkvLkdkrKK~r----------------Etfer~~rlye~~~p~~~~~L~r~eveye~kr~~~sqYy~~v 129 (487)
T KOG4672|consen 66 PFQIDVLRLNEKVLKDKRKKRR----------------ETFERGKRLYEATEPVMFSHLQRREVEYEDKRPEDSQYYHPV 129 (487)
T ss_pred ccccchhhhHHHHHHHHHHHHH----------------HHHHHHHHhhcccChHHHHHHHHHhhhhhhhchhhhhhhhhc
Q ss_pred HHhhccccccccc
Q 014660 348 KSAQLGNKQEIVL 360 (421)
Q Consensus 348 ~~lql~~~~E~~~ 360 (421)
++.+..+..+|.+
T Consensus 130 kna~~v~~~dipl 142 (487)
T KOG4672|consen 130 KNAQGVPPPDIPL 142 (487)
T ss_pred cccccCCCccCcC
No 480
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=54.03 E-value=70 Score=33.87 Aligned_cols=69 Identities=28% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRK---VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~r---Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+..|..+..-+..|+-|..-...+..+... ++.|..+...|++++..|.+++..++.+...+...|-++
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~ 106 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNL 106 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
No 481
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=54.01 E-value=65 Score=34.01 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 274 WIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 274 ~~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
..+.-.+++++.+.+.++...-+..+.+...+..+...-......-..|......|.+++.+|..+...|+++|...
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 482
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=53.97 E-value=60 Score=27.59 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
..+-++.|+.+++.|+.+...|.+++..++.++..++.+.+.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 483
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=53.84 E-value=1.8e+02 Score=29.59 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 014660 275 IQNERELKRERRKQSNR---------------ESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL--- 336 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNR---------------ESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L--- 336 (421)
+.-|.++|-.|.+.-.| ..++.--..-+..|+.|+.....|+.....-+.|+++.++++..|
T Consensus 140 L~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~v 219 (267)
T PF10234_consen 140 LGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSV 219 (267)
T ss_pred HhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred ----HHHHHHHHHHHHHh
Q 014660 337 ----RQENAALLEKLKSA 350 (421)
Q Consensus 337 ----~~EN~~LkekL~~l 350 (421)
-.|-..|.++|+.+
T Consensus 220 RPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 220 RPAFMDEYEKLEEELQKL 237 (267)
T ss_pred ChHHHHHHHHHHHHHHHH
No 484
>PHA02109 hypothetical protein
Probab=53.75 E-value=36 Score=33.01 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
|.+++-+|+.+++.|..|..+|+.+|..++++...-.+|
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE 229 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSE 229 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=53.69 E-value=75 Score=30.41 Aligned_cols=85 Identities=15% Similarity=0.309 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014660 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGN 354 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~ 354 (421)
+-+++..|+.++-. |...+..|.......+++...++..+.|..+--.+|+..+++-...+.-..+|++-|..-++..
T Consensus 11 Lv~~kkakka~~~k--~k~~k~~~~~~~~~~~~~k~~a~~a~~ek~erdr~Ln~qr~~~~~~K~~~AqikQlI~~~~i~~ 88 (177)
T PF09831_consen 11 LVDKKKAKKAKKEK--RKQRKQKRKGGQEEVDEAKAAAERARAEKAERDRELNRQRQAEAERKEIQAQIKQLIEQNRIPR 88 (177)
T ss_pred CccHHHHHHHHHHH--HHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q ss_pred -ccccccc
Q 014660 355 -KQEIVLN 361 (421)
Q Consensus 355 -~~E~~~~ 361 (421)
.+||.++
T Consensus 89 ~~gdi~yn 96 (177)
T PF09831_consen 89 EDGDIAYN 96 (177)
T ss_pred CCCceeEe
No 486
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=53.61 E-value=2e+02 Score=29.48 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 278 ErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.-.+|..-.+..+-...+.=..-+...+.|..+.+.|..|+.....-...|..-|..|..+|..|+++....
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~ 97 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR 97 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PRK14143 heat shock protein GrpE; Provisional
Probab=53.61 E-value=35 Score=33.88 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.++..++..|+.+...|+.++..|+.++.++.++..-+|.+...
T Consensus 63 ~~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~k 106 (238)
T PRK14143 63 ADNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSR 106 (238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=53.60 E-value=2.2e+02 Score=27.52 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 014660 278 ERELKRERRKQSNRESARRSRLRKQAEAEELS-----------RKVDSLIDENASLK-------SEINQLSENSEKLRQE 339 (421)
Q Consensus 278 ErE~KR~RRk~sNRESARRSRlRKqa~leeLE-----------~rVe~L~~EN~~L~-------~el~~L~e~~~~L~~E 339 (421)
|+.+--.|+++.|=+.=|-..+.+|..++... .+++.|+.|...|. .+|..|.+++..-+.+
T Consensus 77 EKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehq 156 (178)
T PF14073_consen 77 EKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQ 156 (178)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhcc
Q 014660 340 NAALLEKLKSAQLG 353 (421)
Q Consensus 340 N~~LkekL~~lql~ 353 (421)
-..+.++...+|-+
T Consensus 157 RKlvQdkAaqLQt~ 170 (178)
T PF14073_consen 157 RKLVQDKAAQLQTG 170 (178)
T ss_pred HHHHHHHHHHHHhh
No 489
>PRK12705 hypothetical protein; Provisional
Probab=53.59 E-value=1.8e+02 Score=32.11 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 276 QNERELKRERRKQSNRESARRSRLRKQAEAEELSRKV----DSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 276 qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rV----e~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+.|.+..+..-.+..|+-+.+.|.....++.+...++ ..|.+....|..+...|..+-..|......|..+...++
T Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 122 (508)
T PRK12705 43 QKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELE 122 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=53.59 E-value=67 Score=28.13 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+.+.+=.++...-.-|+.|.+.-..|+++|+.|+.-...|...+.+.
T Consensus 50 ~~~e~~Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~v 97 (97)
T PF15136_consen 50 SEREQQYQQSRTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQV 97 (97)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 491
>PF15456 Uds1: Up-regulated During Septation
Probab=53.35 E-value=1.7e+02 Score=26.32 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Q 014660 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSL------------------IDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L------------------~~EN~~L~~el~~L~e~~~~L 336 (421)
.++=.++||+-+.+.+|.-+-|.+..=...+-+....+..| +.+...+..++..+..++..+
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~l 100 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKL 100 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 014660 337 RQENAALLEKL 347 (421)
Q Consensus 337 ~~EN~~LkekL 347 (421)
+.....++.+|
T Consensus 101 e~R~~~~~~rL 111 (124)
T PF15456_consen 101 ENRLAEVRQRL 111 (124)
T ss_pred HHHHHHHHHHH
No 492
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=53.33 E-value=35 Score=34.47 Aligned_cols=51 Identities=27% Similarity=0.314 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQ 328 (421)
Q Consensus 278 ErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~ 328 (421)
|+-+-++||++-|-.=-..+-.+=-++..+|+.|..+|+.+...|+.++++
T Consensus 196 ErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 196 ERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
No 493
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=53.24 E-value=2e+02 Score=28.44 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 014660 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEIN-----QLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~-----~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.+|+.+...+-+.|.+.|..=++..++.+.++..++.+-..+..+.. ...+.+.+.+.|-..++++...
T Consensus 35 ~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~ 108 (250)
T PRK14474 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLE 108 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=53.19 E-value=53 Score=29.79 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
...++.|+.+++..+.........|..|+..+..+..++..+..++
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 495
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=53.06 E-value=2.2e+02 Score=27.54 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
..+.+..-.|=.+-..+-.+--...+.++.++..|+........+...+...+..|..++..|...|....
T Consensus 147 E~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 147 EEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=53.03 E-value=42 Score=34.98 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
...+.....+.|..+++.|+.....|..++..+.+....++.++..|..+|.+++
T Consensus 131 ~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlE 185 (370)
T PF02994_consen 131 LKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLE 185 (370)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
No 497
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=53.01 E-value=78 Score=33.82 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+||.|+.++.=|+-|....+-.++=++| +..|+.|..+|.++|+.-.++..+.+.+...|..+|.+
T Consensus 113 E~khrKli~dLE~dRe~haqdaaeGDDl---t~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLee 178 (561)
T KOG1103|consen 113 EKKHRKLIKDLEADREAHAQDAAEGDDL---TAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEE 178 (561)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.92 E-value=74 Score=34.54 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 273 TWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 273 ~~~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.|.+++++.+|+-..++.+.| +-.|.+.|+.+.+.-+..-..|+.-+--+..++..|...|..-.++|.+|+
T Consensus 111 q~qq~~e~~erEv~~l~~lls-------r~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 111 QLQQNEEKLEREVKALMELLS-------RGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------ccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
No 499
>PRK14157 heat shock protein GrpE; Provisional
Probab=52.90 E-value=48 Score=32.86 Aligned_cols=60 Identities=8% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCcchhhhhhhccC
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLSRVNN 380 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~~~~~~~~~p~~~e~lls~vd~ 380 (421)
.+|+.+++.|++|...|+.++.++..+++-++.....=++++....... -..+||..+|+
T Consensus 80 ~~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~---------------~~~dLLpvlDn 139 (227)
T PRK14157 80 DDTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIID---------------VLTALLPALDD 139 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhhhhhh
No 500
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.85 E-value=96 Score=35.45 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Q 014660 288 QSNRESARRSRLRKQAE-----AEELSRKVDSLIDENASLKSEI----------------------------NQLSENSE 334 (421)
Q Consensus 288 ~sNRESARRSRlRKqa~-----leeLE~rVe~L~~EN~~L~~el----------------------------~~L~e~~~ 334 (421)
+-+|..---.+.|+... ++....+.+.|+.||..|+..+ ...+....
T Consensus 483 ~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e 562 (716)
T KOG4593|consen 483 QLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLE 562 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhccccc
Q 014660 335 KLRQENAALLEKLKSAQLGNKQ 356 (421)
Q Consensus 335 ~L~~EN~~LkekL~~lql~~~~ 356 (421)
.|.+||+.||+.|..+......
T Consensus 563 ~LqaE~~~lk~~l~~le~~~~~ 584 (716)
T KOG4593|consen 563 ELQAELERLKERLTALEGDKMQ 584 (716)
T ss_pred HHHHHHHHHHHHHHHHhccCCc
Done!