Query 014660
Match_columns 421
No_of_seqs 192 out of 928
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:34:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.4E-14 4.7E-19 110.4 6.3 52 282-333 1-52 (55)
2 1t2k_D Cyclic-AMP-dependent tr 99.4 7.5E-13 2.6E-17 101.9 9.3 55 282-336 1-55 (61)
3 2wt7_A Proto-oncogene protein 99.4 1.1E-12 3.8E-17 101.8 9.8 56 282-337 2-57 (63)
4 1jnm_A Proto-oncogene C-JUN; B 99.4 1.1E-12 3.7E-17 101.4 6.9 54 282-335 1-54 (62)
5 2dgc_A Protein (GCN4); basic d 99.3 4.2E-12 1.4E-16 99.1 6.8 51 284-334 11-61 (63)
6 1ci6_A Transcription factor AT 99.2 4E-11 1.4E-15 93.3 8.1 61 281-348 1-61 (63)
7 1gd2_E Transcription factor PA 99.0 5.7E-10 2E-14 88.9 8.4 61 284-344 10-70 (70)
8 1hjb_A Ccaat/enhancer binding 98.9 5.4E-09 1.8E-13 86.5 8.9 64 280-350 13-76 (87)
9 1gu4_A CAAT/enhancer binding p 98.9 7.8E-09 2.7E-13 83.9 8.7 55 282-336 15-69 (78)
10 3a5t_A Transcription factor MA 98.8 1.6E-10 5.6E-15 98.8 -3.7 57 275-331 30-86 (107)
11 2wt7_B Transcription factor MA 98.5 7.3E-07 2.5E-11 74.2 10.2 69 275-350 20-88 (90)
12 2oqq_A Transcription factor HY 97.7 7.5E-05 2.6E-09 54.2 5.9 40 302-348 2-41 (42)
13 1deb_A APC protein, adenomatou 97.0 0.0029 1E-07 47.7 7.9 47 305-351 5-51 (54)
14 1skn_P DNA-binding domain of S 96.6 0.00095 3.3E-08 55.6 2.7 32 279-310 59-90 (92)
15 3s9g_A Protein hexim1; cyclin 95.6 0.043 1.5E-06 46.5 8.1 50 302-351 36-92 (104)
16 2w6a_A ARF GTPase-activating p 95.5 0.049 1.7E-06 42.4 7.4 41 305-345 22-62 (63)
17 2jee_A YIIU; FTSZ, septum, coi 95.5 0.057 2E-06 44.2 8.2 49 303-351 20-68 (81)
18 3hnw_A Uncharacterized protein 95.2 0.086 2.9E-06 46.5 8.9 52 300-351 72-123 (138)
19 3oja_B Anopheles plasmodium-re 94.8 0.25 8.6E-06 50.4 12.7 42 309-350 536-577 (597)
20 1go4_E MAD1 (mitotic arrest de 94.8 0.076 2.6E-06 45.0 7.2 23 330-352 74-96 (100)
21 2c9l_Y EB1, zebra, BZLF1 trans 94.7 0.15 5.1E-06 39.2 7.8 37 286-322 5-41 (63)
22 3m48_A General control protein 94.5 0.036 1.2E-06 38.4 3.7 27 305-331 2-28 (33)
23 2oxj_A Hybrid alpha/beta pepti 94.2 0.054 1.8E-06 37.7 4.1 28 304-331 2-29 (34)
24 3he5_A Synzip1; heterodimeric 94.1 0.18 6.2E-06 36.8 6.8 45 304-348 4-48 (49)
25 1kd8_B GABH BLL, GCN4 acid bas 94.1 0.095 3.2E-06 36.9 5.1 31 304-334 2-32 (36)
26 3vmx_A Voltage-gated hydrogen 94.1 0.19 6.6E-06 37.5 7.0 41 309-349 3-43 (48)
27 1kd8_A GABH AIV, GCN4 acid bas 93.8 0.078 2.7E-06 37.3 4.3 31 304-334 2-32 (36)
28 3a7p_A Autophagy protein 16; c 93.6 0.86 2.9E-05 41.1 11.9 73 277-349 63-135 (152)
29 3a2a_A Voltage-gated hydrogen 93.6 0.17 5.7E-06 38.9 6.1 41 309-349 10-50 (58)
30 3hnw_A Uncharacterized protein 93.3 0.51 1.7E-05 41.5 9.8 48 303-350 82-129 (138)
31 2jee_A YIIU; FTSZ, septum, coi 93.2 0.4 1.4E-05 39.2 8.3 47 302-348 26-72 (81)
32 3c3f_A Alpha/beta peptide with 93.1 0.11 3.7E-06 36.1 4.1 28 304-331 2-29 (34)
33 3oja_B Anopheles plasmodium-re 93.0 0.52 1.8E-05 48.1 10.8 52 299-350 505-556 (597)
34 3cvf_A Homer-3, homer protein 92.9 0.17 5.9E-06 41.1 5.7 47 304-350 7-53 (79)
35 3c3g_A Alpha/beta peptide with 92.6 0.15 5E-06 35.3 4.1 27 305-331 2-28 (33)
36 3m9b_A Proteasome-associated A 92.5 0.084 2.9E-06 51.1 4.0 41 303-343 54-94 (251)
37 3m91_A Proteasome-associated A 92.5 0.46 1.6E-05 35.7 7.1 39 305-343 11-49 (51)
38 2bni_A General control protein 92.2 0.16 5.4E-06 35.4 3.9 28 304-331 2-29 (34)
39 2dfs_A Myosin-5A; myosin-V, in 92.1 0.81 2.8E-05 51.8 11.8 18 334-351 1026-1043(1080)
40 1uo4_A General control protein 92.1 0.17 5.7E-06 35.3 3.9 28 304-331 2-29 (34)
41 3mq7_A Bone marrow stromal ant 92.1 0.68 2.3E-05 40.3 8.6 41 309-349 70-110 (121)
42 2wq1_A General control protein 91.7 0.21 7.3E-06 34.5 4.1 27 305-331 2-28 (33)
43 3m91_A Proteasome-associated A 91.7 0.67 2.3E-05 34.8 7.1 42 309-350 8-49 (51)
44 3efg_A Protein SLYX homolog; x 91.5 0.47 1.6E-05 38.2 6.6 50 303-352 14-63 (78)
45 2hy6_A General control protein 91.5 0.21 7.2E-06 34.7 3.9 29 304-332 2-30 (34)
46 2kz5_A Transcription factor NF 91.2 0.017 5.8E-07 48.1 -2.1 25 279-303 63-87 (91)
47 3cve_A Homer protein homolog 1 91.2 0.76 2.6E-05 36.8 7.5 45 306-350 3-47 (72)
48 1uii_A Geminin; human, DNA rep 91.0 1.1 3.8E-05 36.8 8.4 35 317-351 46-80 (83)
49 2wt7_A Proto-oncogene protein 90.8 2.1 7.2E-05 32.6 9.5 36 312-347 25-60 (63)
50 4h22_A Leucine-rich repeat fli 90.7 0.97 3.3E-05 38.5 8.0 46 303-348 37-82 (103)
51 4emc_A Monopolin complex subun 90.4 0.35 1.2E-05 45.0 5.6 80 308-396 18-99 (190)
52 1fmh_A General control protein 90.1 0.35 1.2E-05 32.8 3.9 30 304-333 2-31 (33)
53 2yy0_A C-MYC-binding protein; 90.1 0.53 1.8E-05 35.4 5.3 32 310-348 19-50 (53)
54 2yy0_A C-MYC-binding protein; 89.7 0.59 2E-05 35.1 5.3 21 306-326 29-49 (53)
55 1wt6_A Myotonin-protein kinase 89.7 3.4 0.00012 33.8 10.1 61 290-353 14-74 (81)
56 3m9b_A Proteasome-associated A 89.6 0.25 8.7E-06 47.7 4.1 44 309-352 53-96 (251)
57 1t6f_A Geminin; coiled-coil, c 89.2 0.57 1.9E-05 33.0 4.5 30 316-345 6-35 (37)
58 2wt7_B Transcription factor MA 88.5 3.9 0.00013 33.9 9.9 31 320-350 51-81 (90)
59 1ic2_A Tropomyosin alpha chain 87.9 8.7 0.0003 30.4 11.8 46 304-349 21-66 (81)
60 3s9g_A Protein hexim1; cyclin 87.6 2.8 9.7E-05 35.5 8.6 30 302-331 64-93 (104)
61 3i00_A HIP-I, huntingtin-inter 87.4 7 0.00024 33.7 11.3 46 298-350 35-80 (120)
62 3htk_A Structural maintenance 87.2 4 0.00014 30.2 8.5 48 301-348 10-57 (60)
63 1jcd_A Major outer membrane li 87.1 3.4 0.00012 31.1 7.9 46 303-348 4-49 (52)
64 1gmj_A ATPase inhibitor; coile 86.9 4.9 0.00017 33.0 9.5 53 291-350 25-77 (84)
65 2r2v_A GCN4 leucine zipper; co 86.8 0.82 2.8E-05 31.8 4.1 28 304-331 2-29 (34)
66 1gd2_E Transcription factor PA 86.6 3.8 0.00013 32.4 8.5 29 306-334 39-67 (70)
67 3u1c_A Tropomyosin alpha-1 cha 86.6 12 0.00043 30.8 12.3 41 307-347 27-67 (101)
68 4etp_A Kinesin-like protein KA 86.6 2 6.7E-05 43.5 8.5 50 301-350 8-57 (403)
69 3u06_A Protein claret segregat 86.5 1.9 6.3E-05 43.9 8.4 50 302-351 9-58 (412)
70 1ic2_A Tropomyosin alpha chain 86.5 3.6 0.00012 32.7 8.4 62 290-351 14-75 (81)
71 2w83_C C-JUN-amino-terminal ki 85.7 1.3 4.3E-05 36.0 5.3 18 331-348 37-54 (77)
72 3o0z_A RHO-associated protein 85.5 9.9 0.00034 34.7 11.8 69 278-349 12-80 (168)
73 2fxo_A Myosin heavy chain, car 85.4 4.8 0.00016 34.5 9.3 30 321-350 94-123 (129)
74 3trt_A Vimentin; cytoskeleton, 85.4 11 0.00038 29.1 10.9 56 286-344 21-76 (77)
75 2v66_B Nuclear distribution pr 85.3 16 0.00054 31.3 12.3 42 306-347 38-79 (111)
76 1nkp_B MAX protein, MYC proto- 85.2 3.2 0.00011 32.8 7.5 31 321-351 51-81 (83)
77 2zxx_A Geminin; coiled-coil, c 84.9 3.2 0.00011 33.8 7.3 35 317-351 34-68 (79)
78 3na7_A HP0958; flagellar bioge 84.8 9.1 0.00031 35.9 11.7 37 304-340 91-127 (256)
79 1nkp_B MAX protein, MYC proto- 84.7 1.1 3.8E-05 35.5 4.6 31 303-333 47-77 (83)
80 3oja_A Leucine-rich immune mol 84.6 9.2 0.00031 38.2 12.3 42 308-349 426-467 (487)
81 1hjb_A Ccaat/enhancer binding 84.3 6.3 0.00022 32.3 9.0 59 279-337 16-77 (87)
82 1dip_A Delta-sleep-inducing pe 84.3 0.57 1.9E-05 37.9 2.7 36 318-353 16-51 (78)
83 1c1g_A Tropomyosin; contractIl 84.3 14 0.00049 32.0 12.0 41 307-347 220-260 (284)
84 3q8t_A Beclin-1; autophagy, AT 84.3 16 0.00055 30.1 12.4 24 285-308 28-51 (96)
85 3nmd_A CGMP dependent protein 84.2 4.5 0.00015 32.4 7.8 28 301-328 38-65 (72)
86 2xdj_A Uncharacterized protein 84.2 7.8 0.00027 31.5 9.4 42 306-347 23-64 (83)
87 4b4t_K 26S protease regulatory 84.0 1.5 5.2E-05 44.7 6.4 46 306-351 45-90 (428)
88 3swy_A Cyclic nucleotide-gated 83.7 4.4 0.00015 29.8 7.0 42 307-351 2-43 (46)
89 2v4h_A NF-kappa-B essential mo 83.6 12 0.00042 32.1 10.8 62 290-351 32-103 (110)
90 3a7o_A Autophagy protein 16; c 83.5 4.3 0.00015 32.6 7.3 46 306-351 28-73 (75)
91 2fxo_A Myosin heavy chain, car 83.5 12 0.00042 31.9 11.0 47 304-350 63-109 (129)
92 2v71_A Nuclear distribution pr 83.4 8.4 0.00029 35.7 10.5 15 322-336 107-121 (189)
93 3a7p_A Autophagy protein 16; c 83.3 4.5 0.00015 36.5 8.4 33 305-337 98-130 (152)
94 2eqb_B RAB guanine nucleotide 83.2 5.5 0.00019 33.5 8.3 21 330-350 75-95 (97)
95 3ghg_A Fibrinogen alpha chain; 83.1 2.5 8.6E-05 44.8 7.6 17 275-291 56-72 (562)
96 3nmd_A CGMP dependent protein 83.0 2 6.9E-05 34.4 5.3 35 301-335 31-65 (72)
97 1wlq_A Geminin; coiled-coil; 2 82.9 5.2 0.00018 32.8 7.9 34 317-350 38-71 (83)
98 1nlw_A MAD protein, MAX dimeri 82.9 2.2 7.5E-05 34.2 5.6 19 330-348 60-78 (80)
99 3bas_A Myosin heavy chain, str 82.8 17 0.00059 29.3 12.2 52 300-351 32-83 (89)
100 3q8t_A Beclin-1; autophagy, AT 82.8 5.4 0.00019 32.9 8.2 10 337-346 73-82 (96)
101 1nkp_A C-MYC, MYC proto-oncoge 82.7 5.4 0.00019 32.3 8.0 33 319-351 54-86 (88)
102 3u59_A Tropomyosin beta chain; 82.2 6.3 0.00022 32.4 8.4 24 311-334 31-54 (101)
103 3u1c_A Tropomyosin alpha-1 cha 82.1 20 0.00069 29.6 12.4 58 291-348 18-75 (101)
104 2oqq_A Transcription factor HY 82.1 2.7 9.2E-05 30.5 5.2 25 302-326 16-40 (42)
105 2dgc_A Protein (GCN4); basic d 82.0 5.8 0.0002 30.4 7.5 19 331-349 37-55 (63)
106 3o0z_A RHO-associated protein 81.6 18 0.00063 33.0 11.8 40 287-326 74-113 (168)
107 3oja_A Leucine-rich immune mol 81.4 13 0.00043 37.2 11.9 43 297-339 429-471 (487)
108 1jnm_A Proto-oncogene C-JUN; B 81.2 12 0.00039 28.3 8.9 35 312-346 24-58 (62)
109 2j5u_A MREC protein; bacterial 81.2 0.7 2.4E-05 44.0 2.5 36 315-350 24-62 (255)
110 1a93_B MAX protein, coiled coi 81.1 2.7 9.1E-05 29.3 4.7 20 329-348 12-31 (34)
111 1t2k_D Cyclic-AMP-dependent tr 80.9 11 0.00038 28.3 8.6 38 310-347 22-59 (61)
112 3iv1_A Tumor susceptibility ge 80.8 21 0.00071 28.9 10.6 52 300-351 22-73 (78)
113 4h22_A Leucine-rich repeat fli 80.6 6.8 0.00023 33.3 8.0 57 303-359 30-88 (103)
114 3mq7_A Bone marrow stromal ant 80.5 8.2 0.00028 33.6 8.6 33 318-350 72-104 (121)
115 3s4r_A Vimentin; alpha-helix, 80.4 7.1 0.00024 32.1 8.0 22 310-331 23-44 (93)
116 2lw1_A ABC transporter ATP-bin 80.4 4.9 0.00017 32.3 6.9 49 301-349 20-74 (89)
117 3htk_A Structural maintenance 80.0 11 0.00036 27.8 8.2 46 305-350 7-52 (60)
118 2wuj_A Septum site-determining 79.7 1.7 5.8E-05 32.8 3.7 29 303-331 27-55 (57)
119 3he5_B Synzip2; heterodimeric 79.7 5.7 0.00019 29.3 6.3 45 294-340 3-47 (52)
120 3swf_A CGMP-gated cation chann 79.6 4.4 0.00015 32.6 6.2 43 306-351 3-45 (74)
121 1am9_A Srebp-1A, protein (ster 79.3 6.8 0.00023 31.2 7.4 67 285-351 5-77 (82)
122 3u59_A Tropomyosin beta chain; 79.1 25 0.00085 28.8 12.3 57 291-347 18-74 (101)
123 3a2a_A Voltage-gated hydrogen 79.1 5.2 0.00018 30.7 6.1 39 291-331 8-46 (58)
124 1wt6_A Myotonin-protein kinase 78.7 13 0.00043 30.4 8.7 50 290-339 25-74 (81)
125 2wvr_A Geminin; DNA replicatio 78.7 7.3 0.00025 36.7 8.4 33 318-350 116-148 (209)
126 1joc_A EEA1, early endosomal a 78.3 11 0.00037 32.2 8.8 46 303-348 11-56 (125)
127 3s4r_A Vimentin; alpha-helix, 78.1 19 0.00065 29.5 9.9 29 303-331 56-84 (93)
128 3efg_A Protein SLYX homolog; x 78.0 7.3 0.00025 31.2 7.1 46 306-351 10-55 (78)
129 3mq9_A Bone marrow stromal ant 77.5 18 0.00061 35.9 11.5 30 322-351 434-463 (471)
130 1ci6_A Transcription factor AT 77.5 7.6 0.00026 29.7 6.8 25 306-330 33-57 (63)
131 2eqb_B RAB guanine nucleotide 77.2 31 0.0011 28.9 12.3 47 304-350 13-59 (97)
132 1nkp_A C-MYC, MYC proto-oncoge 77.1 4.7 0.00016 32.7 5.9 31 303-333 52-82 (88)
133 2ve7_C Kinetochore protein NUF 76.8 3.3 0.00011 39.4 5.7 45 281-325 119-163 (250)
134 4dzn_A Coiled-coil peptide CC- 76.2 5.3 0.00018 27.1 4.8 24 321-344 6-29 (33)
135 1gu4_A CAAT/enhancer binding p 76.2 9.4 0.00032 30.7 7.3 52 281-332 18-72 (78)
136 3cvf_A Homer-3, homer protein 75.5 29 0.001 28.0 10.1 49 302-350 26-74 (79)
137 2xdj_A Uncharacterized protein 75.1 29 0.00098 28.1 10.0 50 296-345 20-69 (83)
138 3bbp_D GRIP and coiled-coil do 75.0 2.3 8E-05 33.9 3.4 52 306-357 18-69 (71)
139 2v4h_A NF-kappa-B essential mo 74.9 35 0.0012 29.3 10.8 48 303-350 62-109 (110)
140 1a93_B MAX protein, coiled coi 74.4 4.4 0.00015 28.2 4.2 27 316-342 6-32 (34)
141 3na7_A HP0958; flagellar bioge 74.1 32 0.0011 32.1 11.7 47 303-349 32-78 (256)
142 4ani_A Protein GRPE; chaperone 73.8 7.9 0.00027 36.4 7.3 12 402-413 169-180 (213)
143 1gmj_A ATPase inhibitor; coile 73.7 22 0.00075 29.2 8.9 40 291-330 37-78 (84)
144 4ati_A MITF, microphthalmia-as 73.6 9.4 0.00032 32.5 7.1 70 282-351 23-111 (118)
145 1am9_A Srebp-1A, protein (ster 73.4 4.9 0.00017 32.0 5.0 29 302-330 49-77 (82)
146 1fmh_B General control protein 73.3 5.6 0.00019 26.9 4.4 30 304-333 2-31 (33)
147 1dh3_A Transcription factor CR 73.2 5.1 0.00017 30.0 4.7 27 325-351 23-49 (55)
148 2w83_C C-JUN-amino-terminal ki 73.2 4.3 0.00015 32.9 4.6 43 306-348 33-75 (77)
149 3cve_A Homer protein homolog 1 73.0 34 0.0012 27.3 10.1 49 302-350 20-68 (72)
150 3i00_A HIP-I, huntingtin-inter 72.0 26 0.0009 30.1 9.6 39 305-343 17-59 (120)
151 1dip_A Delta-sleep-inducing pe 71.4 4 0.00014 33.0 4.0 26 305-330 17-42 (78)
152 1ik9_A DNA repair protein XRCC 69.6 12 0.0004 35.0 7.4 23 306-328 142-164 (213)
153 4e61_A Protein BIM1; EB1-like 69.1 18 0.00063 30.8 7.8 44 308-351 9-52 (106)
154 1gk7_A Vimentin; intermediate 69.0 9.1 0.00031 27.1 5.0 27 322-348 11-37 (39)
155 1g6u_A Domain swapped dimer; d 68.5 19 0.00065 26.1 6.6 25 325-349 21-45 (48)
156 3ra3_B P2F; coiled coil domain 68.3 4.1 0.00014 26.7 2.8 17 315-331 5-21 (28)
157 2ve7_C Kinetochore protein NUF 68.2 2.3 8E-05 40.5 2.4 38 299-336 144-181 (250)
158 3qne_A Seryl-tRNA synthetase, 68.1 19 0.00066 37.5 9.4 52 298-349 42-103 (485)
159 2oto_A M protein; helical coil 68.1 25 0.00087 30.6 8.9 32 305-336 52-83 (155)
160 1lwu_C Fibrinogen gamma chain; 68.0 14 0.00048 36.7 7.9 44 304-347 13-56 (323)
161 4emc_A Monopolin complex subun 68.0 14 0.00046 34.5 7.3 41 304-344 21-61 (190)
162 1ses_A Seryl-tRNA synthetase; 67.9 53 0.0018 33.2 12.4 30 320-349 67-96 (421)
163 1wle_A Seryl-tRNA synthetase; 67.8 21 0.00072 37.2 9.6 26 322-347 121-146 (501)
164 2ve7_A Kinetochore protein HEC 67.5 7 0.00024 38.2 5.7 34 309-342 184-217 (315)
165 1wle_A Seryl-tRNA synthetase; 67.5 40 0.0014 35.2 11.6 17 334-350 119-135 (501)
166 3qh9_A Liprin-beta-2; coiled-c 67.5 25 0.00087 28.7 7.9 20 304-323 27-46 (81)
167 3w03_C DNA repair protein XRCC 67.3 6.2 0.00021 36.5 4.9 31 304-334 146-176 (184)
168 3ghg_A Fibrinogen alpha chain; 67.3 31 0.0011 36.7 10.6 51 298-348 105-155 (562)
169 2xv5_A Lamin-A/C; structural p 67.1 35 0.0012 27.0 8.6 45 306-350 8-52 (74)
170 3he5_B Synzip2; heterodimeric 66.9 24 0.0008 26.0 6.9 22 310-331 10-31 (52)
171 3bas_A Myosin heavy chain, str 66.6 34 0.0012 27.5 8.7 23 323-345 62-84 (89)
172 4dzn_A Coiled-coil peptide CC- 66.5 14 0.00048 25.0 5.2 27 305-331 4-30 (33)
173 3qh9_A Liprin-beta-2; coiled-c 66.4 30 0.001 28.2 8.2 45 305-349 21-65 (81)
174 3iv1_A Tumor susceptibility ge 66.2 43 0.0015 27.1 9.1 53 299-351 14-66 (78)
175 2lz1_A Nuclear factor erythroi 66.1 0.13 4.4E-06 42.8 -5.8 23 280-302 64-86 (90)
176 3ra3_A P1C; coiled coil domain 65.7 4 0.00014 26.8 2.3 24 313-336 3-26 (28)
177 3u06_A Protein claret segregat 65.6 8.6 0.00029 39.1 6.0 45 304-348 18-62 (412)
178 1fxk_C Protein (prefoldin); ar 65.6 25 0.00086 29.5 8.1 25 307-331 99-123 (133)
179 2dq0_A Seryl-tRNA synthetase; 65.5 30 0.001 35.5 10.1 28 322-349 74-101 (455)
180 3he5_A Synzip1; heterodimeric 65.3 24 0.00083 25.6 6.6 40 312-351 5-44 (49)
181 4etp_A Kinesin-like protein KA 65.2 21 0.00072 36.0 8.8 49 301-349 15-63 (403)
182 3w03_C DNA repair protein XRCC 65.0 15 0.0005 34.0 6.9 34 301-334 150-183 (184)
183 1go4_E MAD1 (mitotic arrest de 64.7 12 0.00042 31.5 5.8 27 304-330 13-39 (100)
184 3lay_A Zinc resistance-associa 64.5 47 0.0016 30.2 10.1 17 326-342 115-131 (175)
185 1jcd_A Major outer membrane li 64.4 26 0.00089 26.3 7.0 38 310-347 4-41 (52)
186 3tnu_B Keratin, type II cytosk 64.0 10 0.00035 32.3 5.4 26 305-330 45-70 (129)
187 2oxj_A Hybrid alpha/beta pepti 64.0 13 0.00046 25.8 4.8 27 321-347 5-31 (34)
188 3mtu_A Tropomyosin alpha-1 cha 64.0 12 0.00039 29.7 5.3 48 302-349 15-62 (75)
189 3uux_B Mitochondrial division 64.0 88 0.003 30.1 12.2 54 302-355 176-229 (242)
190 2xzr_A Immunoglobulin-binding 63.9 67 0.0023 27.2 10.9 63 285-347 34-106 (114)
191 2oa5_A Hypothetical protein BQ 63.8 3.7 0.00013 35.3 2.5 26 303-328 8-33 (110)
192 2b9c_A Striated-muscle alpha t 63.8 77 0.0026 27.9 11.4 70 282-351 37-121 (147)
193 1lwu_C Fibrinogen gamma chain; 63.8 16 0.00054 36.3 7.4 9 403-411 153-161 (323)
194 3lay_A Zinc resistance-associa 63.8 25 0.00085 32.0 8.2 20 332-351 114-133 (175)
195 1kd8_B GABH BLL, GCN4 acid bas 63.2 16 0.00055 25.7 5.1 29 321-349 5-33 (36)
196 2xv5_A Lamin-A/C; structural p 63.1 41 0.0014 26.7 8.3 53 296-348 5-57 (74)
197 2v66_B Nuclear distribution pr 63.0 72 0.0025 27.2 11.5 55 295-349 48-102 (111)
198 2zqm_A Prefoldin beta subunit 62.9 25 0.00086 28.5 7.4 37 314-350 74-110 (117)
199 1zme_C Proline utilization tra 62.8 6.4 0.00022 29.2 3.4 24 303-326 44-67 (70)
200 4b4t_K 26S protease regulatory 62.7 13 0.00044 37.9 6.7 43 303-345 49-91 (428)
201 1deq_A Fibrinogen (alpha chain 62.6 23 0.0008 36.1 8.4 45 303-347 113-157 (390)
202 3q0x_A Centriole protein; cent 62.6 18 0.00062 34.4 7.3 40 304-343 179-218 (228)
203 2b5u_A Colicin E3; high resolu 62.4 65 0.0022 34.2 11.8 25 292-316 317-341 (551)
204 3ol1_A Vimentin; structural ge 62.1 71 0.0024 26.9 12.5 17 272-288 13-29 (119)
205 2b5u_A Colicin E3; high resolu 61.7 47 0.0016 35.2 10.7 30 305-334 316-345 (551)
206 1nlw_A MAD protein, MAX dimeri 61.4 28 0.00097 27.6 7.2 34 302-335 46-79 (80)
207 1p9i_A Cortexillin I/GCN4 hybr 60.9 11 0.00039 25.1 3.9 18 311-328 7-24 (31)
208 2ocy_A RAB guanine nucleotide 60.2 71 0.0024 28.7 10.3 20 331-350 108-127 (154)
209 3ljm_A Coil Ser L9C; de novo d 60.2 12 0.00041 25.0 3.9 25 305-329 3-27 (31)
210 2zvf_A Alanyl-tRNA synthetase; 60.0 6.6 0.00023 34.1 3.5 27 307-333 29-55 (171)
211 1ytz_T Troponin T; muscle, THI 59.8 79 0.0027 26.7 11.2 44 307-350 46-89 (107)
212 3oa7_A Head morphogenesis prot 59.8 28 0.00094 32.8 7.8 50 312-361 32-81 (206)
213 3jsv_C NF-kappa-B essential mo 59.5 62 0.0021 27.0 9.1 63 289-351 9-81 (94)
214 3vmx_A Voltage-gated hydrogen 58.5 46 0.0016 24.7 7.2 30 302-331 10-39 (48)
215 4b4t_M 26S protease regulatory 57.7 9 0.00031 39.1 4.6 45 307-351 29-73 (434)
216 3sja_C Golgi to ER traffic pro 57.5 44 0.0015 26.2 7.4 23 327-349 35-57 (65)
217 3q0x_A Centriole protein; cent 57.0 48 0.0017 31.4 9.1 43 306-348 174-216 (228)
218 2xu6_A MDV1 coiled coil; prote 57.0 26 0.0009 28.0 6.1 50 302-351 20-69 (72)
219 1kd8_A GABH AIV, GCN4 acid bas 56.6 24 0.00083 24.8 5.1 29 321-349 5-33 (36)
220 1m1j_B Fibrinogen beta chain; 56.4 1.1E+02 0.0037 31.9 12.4 9 403-411 301-309 (464)
221 2qyw_A Vesicle transport throu 56.1 83 0.0028 25.8 9.5 59 271-329 14-75 (102)
222 2wuj_A Septum site-determining 55.9 11 0.00038 28.2 3.7 26 326-351 29-54 (57)
223 3mud_A DNA repair protein XRCC 55.8 38 0.0013 31.1 7.9 32 308-339 133-164 (175)
224 1s1c_X RHO-associated, coiled- 55.7 47 0.0016 26.4 7.4 31 307-337 3-33 (71)
225 1f5n_A Interferon-induced guan 55.7 82 0.0028 33.4 11.6 9 58-66 75-83 (592)
226 1joc_A EEA1, early endosomal a 55.4 39 0.0013 28.7 7.5 39 306-344 7-45 (125)
227 1f5n_A Interferon-induced guan 55.4 71 0.0024 33.9 11.1 8 291-298 496-503 (592)
228 1uix_A RHO-associated kinase; 55.1 43 0.0015 26.7 7.1 28 309-336 3-30 (71)
229 2fic_A Bridging integrator 1; 55.0 44 0.0015 30.4 8.4 20 296-315 151-170 (251)
230 1p9i_A Cortexillin I/GCN4 hybr 54.8 11 0.00039 25.2 3.1 22 329-350 4-25 (31)
231 3vkg_A Dynein heavy chain, cyt 54.4 66 0.0023 40.9 12.0 34 316-349 2034-2067(3245)
232 3lss_A Seryl-tRNA synthetase; 54.2 1.1E+02 0.0038 31.8 12.1 21 299-319 47-67 (484)
233 3c3g_A Alpha/beta peptide with 54.2 25 0.00087 24.3 4.8 27 321-347 4-30 (33)
234 1m1j_C Fibrinogen gamma chain; 53.8 9.3 0.00032 39.1 3.9 45 307-351 88-132 (409)
235 3k29_A Putative uncharacterize 53.7 1.3E+02 0.0046 27.4 12.2 16 281-296 32-47 (169)
236 3plt_A Sphingolipid long chain 53.5 36 0.0012 32.5 7.6 67 279-350 90-157 (234)
237 1zxa_A CGMP-dependent protein 53.5 19 0.00065 28.4 4.8 31 301-331 23-53 (67)
238 2odv_A Plectin 1, HD1; plakin 53.5 1E+02 0.0035 28.8 10.8 37 278-314 99-135 (235)
239 1fzc_C Fibrin; blood coagulati 53.5 6.6 0.00022 38.9 2.7 46 303-348 4-49 (319)
240 2aze_A Transcription factor DP 53.4 33 0.0011 31.0 6.9 16 299-314 22-37 (155)
241 1fmh_A General control protein 53.4 15 0.0005 24.9 3.5 26 326-351 3-28 (33)
242 3m48_A General control protein 52.9 20 0.00067 24.8 4.1 24 322-345 5-28 (33)
243 1m1j_A Fibrinogen alpha subuni 52.9 1.4E+02 0.0046 31.4 12.2 75 274-348 56-156 (491)
244 3sjb_C Golgi to ER traffic pro 52.7 48 0.0017 27.6 7.3 21 328-348 53-73 (93)
245 2zxx_A Geminin; coiled-coil, c 52.5 76 0.0026 25.7 8.3 23 307-329 38-60 (79)
246 2zvf_A Alanyl-tRNA synthetase; 52.5 16 0.00056 31.5 4.8 32 320-351 28-59 (171)
247 1gk6_A Vimentin; intermediate 52.2 32 0.0011 25.8 5.8 44 306-349 3-46 (59)
248 3viq_B Mating-type switching p 52.1 97 0.0033 25.4 9.0 25 333-357 50-74 (85)
249 4dk0_A Putative MACA; alpha-ha 52.1 72 0.0025 30.2 9.7 20 329-348 127-146 (369)
250 2oa5_A Hypothetical protein BQ 52.0 7.7 0.00026 33.3 2.5 24 326-349 10-33 (110)
251 4gkw_A Spindle assembly abnorm 51.3 79 0.0027 28.2 8.9 42 311-352 113-161 (167)
252 3c3f_A Alpha/beta peptide with 51.3 30 0.001 24.0 4.8 27 321-347 5-31 (34)
253 1j1d_C Troponin I, TNI; THIN f 51.3 34 0.0012 30.1 6.6 45 307-351 62-106 (133)
254 3vkg_A Dynein heavy chain, cyt 51.2 58 0.002 41.3 10.8 13 139-151 1647-1659(3245)
255 1fxk_A Prefoldin; archaeal pro 51.1 37 0.0013 27.1 6.4 34 315-348 70-103 (107)
256 1uii_A Geminin; human, DNA rep 50.7 48 0.0017 27.1 6.9 29 303-331 46-74 (83)
257 4ath_A MITF, microphthalmia-as 50.6 32 0.0011 28.1 5.9 27 305-331 51-77 (83)
258 1l8d_A DNA double-strand break 50.1 38 0.0013 27.4 6.4 34 318-351 11-44 (112)
259 4ath_A MITF, microphthalmia-as 49.9 28 0.00097 28.4 5.4 39 302-351 38-76 (83)
260 2q6q_A Spindle POLE BODY compo 49.9 97 0.0033 24.7 8.4 44 301-351 15-58 (74)
261 1wlq_A Geminin; coiled-coil; 2 49.6 42 0.0014 27.5 6.4 26 305-330 40-65 (83)
262 2i1j_A Moesin; FERM, coiled-co 49.0 10 0.00035 40.0 3.4 29 304-332 336-364 (575)
263 3e98_A GAF domain of unknown f 48.9 32 0.0011 32.5 6.6 30 305-334 81-113 (252)
264 2w6b_A RHO guanine nucleotide 48.4 74 0.0025 24.3 7.1 32 306-337 13-44 (56)
265 2zdi_C Prefoldin subunit alpha 48.4 34 0.0012 29.6 6.1 40 306-345 101-140 (151)
266 2ke4_A CDC42-interacting prote 47.8 1.1E+02 0.0038 25.3 8.9 30 322-351 60-89 (98)
267 2dq3_A Seryl-tRNA synthetase; 47.8 32 0.0011 34.8 6.8 28 322-349 73-100 (425)
268 2wq1_A General control protein 47.7 37 0.0013 23.4 4.8 27 321-347 4-30 (33)
269 2yko_A LINE-1 ORF1P; RNA-bindi 47.5 30 0.001 33.1 6.0 43 307-349 3-45 (233)
270 2er8_A Regulatory protein Leu3 47.3 10 0.00034 28.4 2.3 22 302-323 48-69 (72)
271 1ik9_A DNA repair protein XRCC 47.3 68 0.0023 29.9 8.4 26 308-333 137-162 (213)
272 3ni0_A Bone marrow stromal ant 47.3 1.3E+02 0.0044 25.3 9.8 58 294-351 30-87 (99)
273 3trt_A Vimentin; cytoskeleton, 46.8 95 0.0032 23.7 9.2 43 308-350 33-75 (77)
274 1uo4_A General control protein 46.7 30 0.001 24.0 4.3 25 322-346 6-30 (34)
275 1deq_A Fibrinogen (alpha chain 46.6 1.2E+02 0.004 31.1 10.4 19 275-293 59-77 (390)
276 3ljm_A Coil Ser L9C; de novo d 46.6 25 0.00085 23.5 3.7 26 327-352 4-29 (31)
277 2hy6_A General control protein 46.5 37 0.0013 23.6 4.7 28 321-348 5-32 (34)
278 1m1j_C Fibrinogen gamma chain; 46.5 47 0.0016 34.0 7.7 41 305-345 93-133 (409)
279 3he4_A Synzip6; heterodimeric 46.2 23 0.0008 26.3 4.0 35 304-338 18-52 (56)
280 2wg5_A General control protein 46.1 12 0.0004 31.4 2.7 25 327-351 10-34 (109)
281 2dq0_A Seryl-tRNA synthetase; 45.6 49 0.0017 33.9 7.8 14 336-349 74-87 (455)
282 2bni_A General control protein 45.3 29 0.001 24.1 4.1 27 321-347 5-31 (34)
283 1j1e_C Troponin I, TNI; THIN f 45.1 50 0.0017 30.4 6.9 44 308-351 63-106 (180)
284 2z5i_A TM, general control pro 44.8 77 0.0026 23.4 6.7 19 309-327 11-29 (52)
285 2lq4_p Lysophosphatidic acid r 44.1 4.7 0.00016 31.9 -0.0 44 305-348 15-79 (80)
286 3hhm_B NISH2 P85alpha; PI3KCA, 44.0 76 0.0026 31.8 8.7 45 305-349 207-251 (373)
287 1g6u_A Domain swapped dimer; d 43.9 46 0.0016 24.1 5.1 18 314-331 24-41 (48)
288 2w6a_A ARF GTPase-activating p 43.6 1.1E+02 0.0039 23.7 8.2 24 313-336 37-60 (63)
289 1yke_B RNA polymerase II holoe 43.2 32 0.0011 30.6 5.2 35 309-343 91-125 (151)
290 2l5g_B Putative uncharacterize 42.9 50 0.0017 23.9 5.2 28 323-350 8-35 (42)
291 2r2v_A GCN4 leucine zipper; co 42.9 50 0.0017 22.9 4.9 28 321-348 5-32 (34)
292 3ol1_A Vimentin; structural ge 42.5 1.5E+02 0.0052 24.9 11.4 35 315-349 67-101 (119)
293 4dzo_A Mitotic spindle assembl 42.5 45 0.0015 28.7 5.9 28 303-330 4-31 (123)
294 1ykh_B RNA polymerase II holoe 42.5 40 0.0014 29.1 5.6 28 309-336 91-118 (132)
295 2pnv_A Small conductance calci 42.3 31 0.0011 25.0 4.0 23 308-330 14-36 (43)
296 3ghg_C Fibrinogen gamma chain; 42.2 1.3E+02 0.0044 30.9 10.1 61 316-376 97-158 (411)
297 3fpp_A Macrolide-specific effl 41.8 1.4E+02 0.0048 27.9 9.8 16 333-348 130-145 (341)
298 2l5g_B Putative uncharacterize 41.8 52 0.0018 23.8 5.1 34 306-339 5-38 (42)
299 1vcs_A Vesicle transport throu 41.8 96 0.0033 25.4 7.6 53 300-352 35-95 (102)
300 1hlo_A Protein (transcription 41.6 21 0.00073 27.9 3.4 21 325-345 58-78 (80)
301 3tq7_B Microtubule-associated 41.4 46 0.0016 27.0 5.4 47 303-349 8-54 (82)
302 3qne_A Seryl-tRNA synthetase, 41.3 71 0.0024 33.3 8.2 45 306-350 43-90 (485)
303 1gk6_A Vimentin; intermediate 40.8 1.1E+02 0.0038 22.8 8.1 47 302-348 6-52 (59)
304 3mov_A Lamin-B1; LMNB1, B-type 40.7 1.5E+02 0.0051 24.3 9.2 47 304-350 38-84 (95)
305 3q4f_C DNA repair protein XRCC 40.7 48 0.0016 30.8 6.0 22 310-331 161-182 (186)
306 4b4t_J 26S protease regulatory 40.7 29 0.00099 35.3 5.1 42 303-351 25-66 (405)
307 3p7i_A PHND, subunit of alkylp 40.6 29 0.00097 33.1 4.8 54 271-324 259-312 (321)
308 4dk0_A Putative MACA; alpha-ha 40.5 45 0.0015 31.6 6.2 37 314-350 119-155 (369)
309 2wg5_A General control protein 40.5 24 0.0008 29.5 3.7 39 312-359 9-47 (109)
310 3rrk_A V-type ATPase 116 kDa s 40.4 56 0.0019 31.3 6.9 34 306-339 95-128 (357)
311 2akf_A Coronin-1A; coiled coil 40.3 64 0.0022 21.9 5.0 25 307-331 3-27 (32)
312 3lss_A Seryl-tRNA synthetase; 40.2 1.6E+02 0.0054 30.7 10.6 24 326-349 113-136 (484)
313 1fzc_C Fibrin; blood coagulati 40.0 23 0.00078 35.1 4.1 41 311-351 5-45 (319)
314 2wvr_A Geminin; DNA replicatio 40.0 1.3E+02 0.0044 28.4 8.9 29 303-331 115-143 (209)
315 1dkg_A Nucleotide exchange fac 39.9 74 0.0025 29.2 7.3 10 402-411 150-159 (197)
316 1fxk_C Protein (prefoldin); ar 39.3 93 0.0032 25.9 7.3 41 305-345 90-130 (133)
317 3gp4_A Transcriptional regulat 39.2 1.8E+02 0.0062 24.8 9.4 7 278-284 43-49 (142)
318 2z5i_A TM, general control pro 39.2 1E+02 0.0034 22.8 6.6 38 311-348 6-43 (52)
319 4b4t_L 26S protease subunit RP 39.1 30 0.001 35.3 4.9 26 326-351 74-99 (437)
320 1j1d_C Troponin I, TNI; THIN f 38.8 1E+02 0.0036 27.0 7.7 46 302-347 64-109 (133)
321 1x8y_A Lamin A/C; structural p 38.7 1.5E+02 0.0051 23.6 10.3 48 302-349 27-74 (86)
322 2no2_A HIP-I, huntingtin-inter 38.7 1.7E+02 0.0059 24.4 11.7 42 310-351 54-95 (107)
323 1lwu_B Fibrinogen beta chain; 38.6 60 0.0021 32.0 6.9 8 403-410 161-168 (323)
324 3swf_A CGMP-gated cation chann 38.5 1.4E+02 0.0049 23.8 7.8 28 303-330 7-34 (74)
325 1hlo_A Protein (transcription 38.5 40 0.0014 26.3 4.6 54 298-351 24-77 (80)
326 3tnu_A Keratin, type I cytoske 38.4 1.8E+02 0.0062 24.6 11.4 29 308-336 82-110 (131)
327 1lrz_A FEMA, factor essential 38.2 75 0.0026 31.4 7.6 49 302-350 246-300 (426)
328 1gk4_A Vimentin; intermediate 38.2 1.5E+02 0.005 23.5 11.1 50 301-350 24-73 (84)
329 4ani_A Protein GRPE; chaperone 37.8 66 0.0023 30.1 6.7 25 306-330 69-93 (213)
330 3qwe_A GMIP, GEM-interacting p 37.7 2.7E+02 0.0093 26.9 11.2 68 293-360 134-223 (279)
331 3rrk_A V-type ATPase 116 kDa s 37.6 1E+02 0.0035 29.5 8.3 28 305-332 228-255 (357)
332 2e7s_A RAB guanine nucleotide 37.4 41 0.0014 29.7 4.9 45 306-350 35-79 (135)
333 2xzr_A Immunoglobulin-binding 37.4 1.4E+02 0.0049 25.3 7.9 31 301-331 74-104 (114)
334 2gkw_A TNF receptor-associated 37.3 51 0.0018 29.2 5.7 34 305-338 2-35 (192)
335 2xnx_M M protein, M1-BC1; cell 37.0 1.7E+02 0.0059 26.1 8.9 29 320-348 69-97 (146)
336 2k48_A Nucleoprotein; viral pr 36.3 1.6E+02 0.0056 25.0 8.2 14 336-349 87-100 (107)
337 4e61_A Protein BIM1; EB1-like 36.2 1.7E+02 0.0059 24.8 8.4 30 303-332 11-40 (106)
338 3l4q_C Phosphatidylinositol 3- 36.0 1.2E+02 0.004 27.6 7.9 43 307-349 114-156 (170)
339 2aze_A Transcription factor DP 36.0 88 0.003 28.2 6.9 33 312-344 7-39 (155)
340 3tnu_B Keratin, type II cytosk 35.8 2E+02 0.0067 24.2 11.7 9 280-288 37-45 (129)
341 4b4t_L 26S protease subunit RP 35.7 36 0.0012 34.7 4.9 28 317-344 72-99 (437)
342 2yo3_A General control protein 35.6 97 0.0033 30.2 7.6 55 294-348 207-261 (268)
343 2xus_A Breast cancer metastasi 35.4 1.1E+02 0.0037 22.8 6.1 24 299-326 6-29 (49)
344 3zwh_Q Myosin-9; Ca-binding pr 35.0 16 0.00054 26.8 1.5 23 325-347 7-29 (45)
345 4a3a_A Amphiphysin; structural 34.7 1.4E+02 0.0049 27.7 8.5 50 298-350 139-195 (243)
346 3tq2_A KE1; parallel three hel 34.5 94 0.0032 21.3 5.2 29 321-349 5-33 (36)
347 3onj_A T-snare VTI1; helix, HA 33.8 1.8E+02 0.0062 23.5 8.0 23 328-350 69-92 (97)
348 3ra3_A P1C; coiled coil domain 33.8 20 0.0007 23.4 1.7 15 313-327 10-24 (28)
349 3m0a_A TNF receptor-associated 33.7 1.5E+02 0.005 22.1 8.2 19 315-333 24-42 (66)
350 3a7o_A Autophagy protein 16; c 33.7 70 0.0024 25.6 5.2 28 320-347 14-41 (75)
351 2p22_A Suppressor protein STP2 33.2 1.8E+02 0.0062 26.4 8.7 39 309-347 48-86 (174)
352 2ve7_A Kinetochore protein HEC 33.1 83 0.0028 30.6 6.8 31 302-332 184-214 (315)
353 2zqm_A Prefoldin beta subunit 32.9 1.9E+02 0.0065 23.2 12.3 34 318-351 71-104 (117)
354 3vp9_A General transcriptional 32.9 2E+02 0.007 23.8 8.1 42 307-348 40-85 (92)
355 1m1j_B Fibrinogen beta chain; 32.8 3E+02 0.01 28.6 11.2 10 367-376 212-221 (464)
356 1l8d_A DNA double-strand break 32.7 1.9E+02 0.0066 23.2 11.0 28 321-348 75-102 (112)
357 3l4f_A RHO guanine nucleotide 32.7 1.7E+02 0.0057 22.7 7.0 32 307-338 11-42 (61)
358 3viq_B Mating-type switching p 32.6 1.9E+02 0.0066 23.6 7.8 20 305-324 10-29 (85)
359 3u0c_A Invasin IPAB, 62 kDa an 32.6 3E+02 0.01 25.4 10.6 77 277-353 66-146 (201)
360 4b4t_J 26S protease regulatory 32.3 65 0.0022 32.7 6.1 22 310-331 39-60 (405)
361 2j69_A Bacterial dynamin-like 32.2 96 0.0033 33.0 7.7 43 308-350 350-392 (695)
362 2pnv_A Small conductance calci 32.0 57 0.0019 23.6 4.0 15 317-331 16-30 (43)
363 4gif_A Polycystic kidney disea 31.8 1.3E+02 0.0043 22.1 5.9 36 302-337 6-41 (45)
364 3he4_A Synzip6; heterodimeric 31.8 18 0.00062 26.9 1.4 35 317-351 17-51 (56)
365 3jsv_C NF-kappa-B essential mo 31.5 2.3E+02 0.0078 23.6 8.3 49 303-351 40-88 (94)
366 3ghg_C Fibrinogen gamma chain; 31.4 54 0.0018 33.6 5.4 47 302-348 90-136 (411)
367 3iox_A AGI/II, PA; alpha helix 31.4 1.4E+02 0.0046 31.5 8.4 29 305-333 36-64 (497)
368 3okq_A BUD site selection prot 31.3 2.8E+02 0.0095 24.6 10.0 59 290-348 8-78 (141)
369 3vlc_E Golgi to ER traffic pro 30.9 50 0.0017 27.6 4.1 22 327-348 59-80 (94)
370 3pik_A Cation efflux system pr 30.7 3.5E+02 0.012 25.5 11.4 38 294-331 342-379 (446)
371 1zxa_A CGMP-dependent protein 30.6 69 0.0024 25.1 4.7 10 339-348 40-49 (67)
372 2lf0_A Uncharacterized protein 30.6 90 0.0031 27.2 5.8 19 312-330 38-56 (123)
373 4ati_A MITF, microphthalmia-as 30.5 29 0.001 29.4 2.8 35 302-336 73-110 (118)
374 2p22_A Suppressor protein STP2 30.4 1.3E+02 0.0044 27.4 7.2 30 309-338 55-84 (174)
375 3a5t_A Transcription factor MA 29.8 6.9 0.00024 33.3 -1.3 29 321-349 62-90 (107)
376 1lq7_A Alpha3W; three helix bu 29.7 1.7E+02 0.0058 22.4 6.6 47 304-350 3-67 (67)
377 3brv_B NF-kappa-B essential mo 29.4 2.1E+02 0.0073 22.7 7.5 40 295-334 25-64 (70)
378 1ytz_I Troponin I; muscle, THI 29.3 1.5E+02 0.0053 27.2 7.5 19 333-351 85-103 (182)
379 1gax_A Valrs, valyl-tRNA synth 29.3 86 0.0029 34.7 6.9 29 30-65 398-427 (862)
380 3n7n_E Monopolin complex subun 29.0 12 0.0004 31.4 0.0 35 314-348 40-74 (95)
381 1qvr_A CLPB protein; coiled co 28.8 2.1E+02 0.0072 30.8 9.7 28 292-319 387-417 (854)
382 3q4f_C DNA repair protein XRCC 28.8 86 0.0029 29.1 5.7 26 301-326 159-184 (186)
383 1ytz_T Troponin T; muscle, THI 28.6 1.5E+02 0.005 25.0 6.7 36 314-349 46-81 (107)
384 4fi5_A Nucleoprotein; structur 28.5 2.3E+02 0.0077 24.4 7.9 15 335-349 73-87 (113)
385 1j1d_B Troponin T, TNT; THIN f 28.4 2.7E+02 0.0091 23.4 9.5 45 306-350 45-89 (106)
386 1t3j_A Mitofusin 1; coiled coi 28.4 1.8E+02 0.0063 24.2 7.2 41 306-350 50-90 (96)
387 3n5l_A Binding protein compone 28.3 83 0.0029 29.4 5.8 50 275-324 254-303 (310)
388 3kin_B Kinesin heavy chain; mo 28.3 83 0.0028 26.5 5.2 12 319-330 98-109 (117)
389 2aze_B Transcription factor E2 28.1 1.3E+02 0.0045 25.1 6.3 30 307-336 10-39 (106)
390 2aze_B Transcription factor E2 28.0 96 0.0033 25.9 5.4 21 311-331 7-27 (106)
391 2zdi_C Prefoldin subunit alpha 28.0 1.4E+02 0.0049 25.5 6.8 32 306-337 108-139 (151)
392 3swy_A Cyclic nucleotide-gated 27.6 1.8E+02 0.0062 21.2 6.2 24 304-327 6-29 (46)
393 1a93_A Coiled coil, LZ, MYC pr 27.6 1.1E+02 0.0037 21.2 4.7 17 333-349 16-32 (34)
394 1hwt_C Protein (heme activator 27.6 33 0.0011 26.0 2.3 23 300-322 55-77 (81)
395 3pik_A Cation efflux system pr 27.5 3.7E+02 0.013 25.4 10.2 29 306-334 347-375 (446)
396 4ad8_A DNA repair protein RECN 27.3 1.8E+02 0.0061 29.4 8.4 46 284-329 188-239 (517)
397 2ic9_A Nucleocapsid protein; h 27.0 2.7E+02 0.0091 23.3 7.9 13 337-349 58-70 (96)
398 2ic6_A Nucleocapsid protein; h 26.9 2.5E+02 0.0086 22.6 7.9 22 305-326 7-28 (78)
399 3cl3_D NF-kappa-B essential mo 26.8 26 0.00089 30.8 1.8 17 303-319 30-46 (130)
400 4dci_A Uncharacterized protein 26.7 3E+02 0.01 24.5 8.7 21 331-351 84-104 (150)
401 1d7m_A Cortexillin I; coiled-c 26.4 2.8E+02 0.0097 23.1 8.4 40 295-334 17-56 (101)
402 2fic_A Bridging integrator 1; 26.4 2.5E+02 0.0084 25.4 8.4 16 314-329 194-209 (251)
403 1rtm_1 Mannose-binding protein 26.3 73 0.0025 26.3 4.5 20 305-324 6-25 (149)
404 2lw1_A ABC transporter ATP-bin 26.2 1.9E+02 0.0065 22.9 6.7 46 303-348 29-80 (89)
405 3gwk_C SAG1039, putative uncha 26.2 1.4E+02 0.0048 22.9 5.9 7 307-313 33-39 (98)
406 3mud_A DNA repair protein XRCC 25.9 1.2E+02 0.0042 27.8 6.1 35 294-328 133-167 (175)
407 3eff_K Voltage-gated potassium 25.4 1.6E+02 0.0055 24.4 6.5 12 307-318 115-126 (139)
408 1fxk_A Prefoldin; archaeal pro 25.2 2.5E+02 0.0086 22.1 11.7 34 318-351 66-99 (107)
409 1a93_A Coiled coil, LZ, MYC pr 25.1 98 0.0033 21.4 4.1 19 310-328 14-32 (34)
410 4b4t_M 26S protease regulatory 25.1 56 0.0019 33.3 4.2 36 308-343 37-72 (434)
411 2q6q_A Spindle POLE BODY compo 25.0 2.6E+02 0.009 22.2 7.7 46 306-351 6-51 (74)
412 1flk_A TNF receptor associated 24.7 80 0.0027 28.8 4.8 31 308-338 41-71 (228)
413 3p8q_A GP5, head protein; viru 24.7 16 0.00053 36.2 0.0 27 306-332 37-63 (385)
414 4fla_A Regulation of nuclear P 24.6 3E+02 0.01 24.2 8.4 50 302-351 85-134 (152)
415 3k66_A Beta-amyloid-like prote 24.6 4.7E+02 0.016 25.0 10.9 73 302-378 37-114 (239)
416 2qag_B Septin-6, protein NEDD5 24.5 16 0.00054 37.3 0.0 14 326-339 379-392 (427)
417 1vq8_V 50S ribosomal protein L 24.5 2.2E+02 0.0075 22.1 6.6 47 305-351 14-65 (71)
418 1x8y_A Lamin A/C; structural p 24.5 2.7E+02 0.0091 22.1 9.3 47 301-347 33-79 (86)
419 4g2k_A General control protein 24.4 1.4E+02 0.0049 26.0 6.0 9 389-397 98-106 (125)
420 2js5_A Uncharacterized protein 24.2 2.7E+02 0.0092 22.1 7.9 47 305-351 5-65 (71)
421 2ocy_A RAB guanine nucleotide 24.1 3.9E+02 0.013 23.9 11.8 32 319-350 110-141 (154)
422 3v86_A De novo design helix; c 24.0 1.4E+02 0.0047 19.4 4.3 20 308-327 5-24 (27)
423 3sjb_C Golgi to ER traffic pro 24.0 2.3E+02 0.0079 23.5 6.9 21 306-326 52-72 (93)
424 4a17_U RPL35, 60S ribosomal pr 23.7 1.7E+02 0.0056 25.4 6.3 54 305-358 15-73 (124)
425 3thf_A Protein shroom; coiled- 23.7 2.6E+02 0.0089 26.0 7.9 29 299-327 15-43 (190)
426 2f1m_A Acriflavine resistance 23.6 1.6E+02 0.0053 26.7 6.6 30 321-350 102-131 (277)
427 1uix_A RHO-associated kinase; 23.5 2.8E+02 0.0095 22.0 8.2 44 304-347 12-58 (71)
428 1cii_A Colicin IA; bacteriocin 23.3 6.4E+02 0.022 26.8 11.5 35 301-335 361-395 (602)
429 4h10_A ARYL hydrocarbon recept 23.2 1.7E+02 0.0057 22.9 5.7 34 282-315 5-38 (73)
430 3pjs_K KCSA, voltage-gated pot 23.2 1.5E+02 0.0051 25.6 6.1 22 303-324 138-159 (166)
431 3etw_A Adhesin A; antiparallel 23.1 3.6E+02 0.012 23.2 10.4 28 290-317 35-62 (119)
432 4ghu_A TNF receptor-associated 23.1 1E+02 0.0036 27.6 5.2 31 307-337 4-34 (198)
433 2p22_C Protein SRN2; endosome, 22.7 2.2E+02 0.0076 26.0 7.3 28 306-333 82-109 (192)
434 1yc9_A VCEC, multidrug resista 22.6 4.9E+02 0.017 24.5 10.9 33 298-330 342-374 (442)
435 3ni0_A Bone marrow stromal ant 22.4 2.6E+02 0.0088 23.5 6.9 32 296-327 53-84 (99)
436 1urq_A M-tomosyn isoform; tran 22.4 1.6E+02 0.0054 22.5 5.3 33 301-333 30-62 (63)
437 3d5k_A OPRM, outer membrane pr 22.3 5.3E+02 0.018 24.8 11.4 30 301-330 358-387 (474)
438 3uux_B Mitochondrial division 22.2 2.9E+02 0.0099 26.5 8.2 47 304-350 164-217 (242)
439 3j21_W 50S ribosomal protein L 21.9 2.1E+02 0.0073 22.2 6.1 47 305-351 11-62 (72)
440 4i0x_B ESAT-6-like protein MAB 21.8 1.9E+02 0.0066 22.8 6.0 15 304-318 33-47 (103)
441 1hs7_A Syntaxin VAM3; UP-and-D 21.7 1.4E+02 0.0047 24.8 5.2 21 307-327 37-58 (97)
442 3iyn_Q Protein IX, PIX, hexon- 21.7 83 0.0028 27.7 4.0 26 305-330 100-125 (140)
443 2dq3_A Seryl-tRNA synthetase; 21.6 51 0.0017 33.3 3.0 11 337-347 81-91 (425)
444 1r8e_A Multidrug-efflux transp 21.6 2.4E+02 0.0081 25.5 7.4 22 308-329 84-105 (278)
445 3m0d_C TNF receptor-associated 21.5 2.7E+02 0.0091 21.1 8.5 32 305-336 8-39 (65)
446 3zbh_A ESXA; unknown function, 21.4 2E+02 0.0068 21.7 5.9 23 326-348 58-80 (99)
447 1zhc_A Hypothetical protein HP 21.3 85 0.0029 24.6 3.7 41 304-344 18-64 (76)
448 3twe_A Alpha4H; unknown functi 21.3 1.3E+02 0.0044 19.5 3.8 9 323-331 7-15 (27)
449 4ioe_A Secreted protein ESXB; 21.3 1.4E+02 0.0046 22.6 4.8 11 305-315 32-42 (93)
450 2p4v_A Transcription elongatio 21.2 3.2E+02 0.011 23.8 7.9 50 302-351 8-66 (158)
451 1lwu_B Fibrinogen beta chain; 21.2 96 0.0033 30.6 4.8 12 366-377 71-82 (323)
452 2efr_A General control protein 21.2 4.4E+02 0.015 23.5 11.2 66 284-349 51-116 (155)
453 3iyn_Q Protein IX, PIX, hexon- 21.1 59 0.002 28.6 2.9 9 322-330 110-118 (140)
454 4fm3_A Uncharacterized hypothe 21.1 3E+02 0.01 23.0 7.1 28 306-333 60-87 (98)
455 1t3j_A Mitofusin 1; coiled coi 20.9 3.6E+02 0.012 22.4 7.7 28 303-330 64-91 (96)
456 2gd5_A Charged multivesicular 20.7 1.5E+02 0.0052 26.2 5.7 10 402-411 158-167 (179)
457 3brv_B NF-kappa-B essential mo 20.7 3.2E+02 0.011 21.7 8.4 39 312-350 21-59 (70)
458 1cii_A Colicin IA; bacteriocin 20.5 6E+02 0.02 27.0 10.6 47 290-338 345-391 (602)
459 2yko_A LINE-1 ORF1P; RNA-bindi 20.5 2.3E+02 0.0078 27.0 7.1 43 305-347 8-50 (233)
460 3sjd_D Golgi to ER traffic pro 20.5 97 0.0033 22.8 3.5 31 271-301 12-42 (46)
461 1a92_A Delta antigen; leucine 20.4 2.1E+02 0.0071 21.4 5.3 19 322-340 19-37 (50)
462 3kqg_A Langerin, C-type lectin 20.4 1.4E+02 0.0049 25.2 5.3 15 306-320 19-33 (182)
463 3ibp_A Chromosome partition pr 20.4 4.2E+02 0.014 26.2 9.1 9 340-348 277-285 (302)
464 3rvy_A ION transport protein; 20.3 22 0.00074 33.0 0.0 20 305-324 258-277 (285)
465 2z73_A Rhodopsin; visual pigme 20.2 22 0.00074 34.0 0.0 56 36-103 391-446 (448)
466 3gpv_A Transcriptional regulat 20.2 1.9E+02 0.0066 24.6 6.1 29 322-350 100-128 (148)
467 2zkr_v 60S ribosomal protein L 20.1 2.2E+02 0.0075 24.6 6.3 54 305-358 14-72 (123)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.52 E-value=1.4e-14 Score=110.36 Aligned_cols=52 Identities=37% Similarity=0.470 Sum_probs=49.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
||++|+++||+||++||.||++|+++||.+|..|+.||..|+.++..|+++|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999998755
No 2
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.41 E-value=7.5e-13 Score=101.89 Aligned_cols=55 Identities=31% Similarity=0.455 Sum_probs=50.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|++++..|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999998744433
No 3
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.40 E-value=1.1e-12 Score=101.84 Aligned_cols=56 Identities=34% Similarity=0.528 Sum_probs=51.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
||++|+++||+||++||.||++++++|+.+|+.|+.+|..|..+|..|++++..|.
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999988887555444
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.36 E-value=1.1e-12 Score=101.44 Aligned_cols=54 Identities=37% Similarity=0.470 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~ 335 (421)
|++||+++||+||++||.||++++++|+.+|+.|+.+|..|..++..|++++..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999998874433
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.29 E-value=4.2e-12 Score=99.08 Aligned_cols=51 Identities=33% Similarity=0.492 Sum_probs=44.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 284 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
++++.+||+||+|||.||++++++|+.+|+.|+.+|..|..++..|++++.
T Consensus 11 ~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 11 ALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445999999999999999999999999999999999999999987553
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.20 E-value=4e-11 Score=93.30 Aligned_cols=61 Identities=28% Similarity=0.433 Sum_probs=48.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+|+.+++++||.||+|||.||++++++|+.+++.|+.+|..|..++..|+. |+..|+.-|.
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~-------E~~~Lk~ll~ 61 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK-------EIQYLKDLIE 61 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999988887 5666665553
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.04 E-value=5.7e-10 Score=88.95 Aligned_cols=61 Identities=30% Similarity=0.353 Sum_probs=56.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (421)
Q Consensus 284 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lk 344 (421)
.||+..||.|+|..|.||++|+.+||.+|..|+.++..|..++..|+.++..|..||..||
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5699999999999999999999999999999999999999999999998888888888765
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.89 E-value=5.4e-09 Score=86.47 Aligned_cols=64 Identities=28% Similarity=0.314 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 280 ELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 280 E~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.+...|+.+|.+||+|||.++++...+++.+++.|++||..|+.+|..|+. |+..|+.-|..+
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~-------E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR-------ELSTLRNLFKQL 76 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHC-
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHC
Confidence 3345667888999999999999999999999999999999999999998887 556666666543
No 9
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.86 E-value=7.8e-09 Score=83.95 Aligned_cols=55 Identities=29% Similarity=0.364 Sum_probs=48.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
+...|+.+|++||+|||.++++...+++.+|..|+.||..|+.+|..|+.++..|
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555678899999999999999999999999999999999999999888744433
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.78 E-value=1.6e-10 Score=98.81 Aligned_cols=57 Identities=28% Similarity=0.346 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
.++..++|.+||+++||.+|++||.||.+++++||.++..|..+...|..|+..|+.
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~ 86 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKL 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999986666655555544444444443
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.49 E-value=7.3e-07 Score=74.24 Aligned_cols=69 Identities=26% Similarity=0.348 Sum_probs=55.2
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
-.+-..+|..||.++||.+|+-||.||..+.++||.++..|..+...|+.++..+.. |...++.++..+
T Consensus 20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~-------e~d~~k~k~~~L 88 (90)
T 2wt7_B 20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR-------ERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence 446678899999999999999999999999999998888777777666666666665 666666666544
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.68 E-value=7.5e-05 Score=54.16 Aligned_cols=40 Identities=33% Similarity=0.437 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
|+|+.+||.++.+|+..|.+|..+++.|+. ||..||+.|+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~-------EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQN-------ENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHhc
Confidence 589999999999999999999998888875 9999999886
No 13
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=97.01 E-value=0.0029 Score=47.73 Aligned_cols=47 Identities=32% Similarity=0.435 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+.|-++|+.|+.||..|++|++.-..++.+|+.|-.-+|+-|+.++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 57899999999999999999999999999999999999999998876
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.59 E-value=0.00095 Score=55.62 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014660 279 RELKRERRKQSNRESARRSRLRKQAEAEELSR 310 (421)
Q Consensus 279 rE~KR~RRk~sNRESARRSRlRKqa~leeLE~ 310 (421)
..+|..||+.+||.+|++||.||.+.+++|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 44577889999999999999999999888763
No 15
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=95.62 E-value=0.043 Score=46.51 Aligned_cols=50 Identities=28% Similarity=0.380 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 302 QAEAEELSRKVDSLIDENASLKS-------EINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~-------el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
-+++-+||.+++.|+.||..|+. +|..|..++++|+.||+.|+.+-.+-+
T Consensus 36 IqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 36 IKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566799999999999988887 788888889999999999988877643
No 16
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.52 E-value=0.049 Score=42.36 Aligned_cols=41 Identities=32% Similarity=0.416 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
+..-|.++.+|.+-|..|.+|+..|+.++..|.+||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 35567899999999999999999999999999999999984
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.50 E-value=0.057 Score=44.17 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+.+.-|+.+++.|+.+|..|..++..++.....|..||.+|+++....+
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888888888888888888888888888888887654
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.16 E-value=0.086 Score=46.51 Aligned_cols=52 Identities=21% Similarity=0.198 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+.+++++.|+.+++.+..|+..|+.++..++.+++.+..++..|++++..++
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777777777777776666666666666666666666554
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.83 E-value=0.25 Score=50.40 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.++.+.|++|...|+.+++..+++..++..|+..++++|+.+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444443
No 20
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.79 E-value=0.076 Score=44.96 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 014660 330 SENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 330 ~e~~~~L~~EN~~LkekL~~lql 352 (421)
++...+|+.|+..||++|..++.
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556777778888887776654
No 21
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=94.66 E-value=0.15 Score=39.19 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=23.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASL 322 (421)
Q Consensus 286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L 322 (421)
.+-+||.++|+||.|=+..++....-...-..||..|
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl 41 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 3445999999999998876665554444333344333
No 22
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=94.54 E-value=0.036 Score=38.39 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
+..||.+|+.|-.+|..|..|+.+|++
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 568999999999999999999999985
No 23
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=94.22 E-value=0.054 Score=37.68 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
++..||.+|+.|-.+|..|..++.+|++
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5788999999999999999999998875
No 24
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=94.08 E-value=0.18 Score=36.76 Aligned_cols=45 Identities=29% Similarity=0.291 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
-+..||.+|..|+.||..|+++.-.-+.-+.-|+.|...||.+|.
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999887777778888889999988874
No 25
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.06 E-value=0.095 Score=36.86 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
++..||.+|+.|-.+|..|..++.+|++-+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 5778999999999999999999999987543
No 26
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=94.05 E-value=0.19 Score=37.46 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+.++..|+.-|..|..++..|+..|..++.|+.+|+.-|++
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkq 43 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999988875
No 27
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=93.83 E-value=0.078 Score=37.29 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
++..||.+|+.|-.+|..|..++.+|++.+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999987554
No 28
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.86 Score=41.14 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 277 NERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 277 dErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+..+.+..+++.+.+...++.=...++++.+-..-++.|..|...|.-++..+.+++.+|+.||..|-+++-.
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555556667777778888999999999999999999999999999999888754
No 29
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=93.57 E-value=0.17 Score=38.87 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++++..|++-|-.|..+++.|+..|.+.+.|+.+|..-|++
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888999999999999999999999999999888875
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.27 E-value=0.51 Score=41.55 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.+++++.++..|+.++..++.++..+.+++..|+.++..|..++..+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555444
No 31
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.24 E-value=0.4 Score=39.17 Aligned_cols=47 Identities=28% Similarity=0.409 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
|-++++|..+-..|..+|..++.....|..++.+|+.|...-.++|.
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555544
No 32
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=93.13 E-value=0.11 Score=36.12 Aligned_cols=28 Identities=7% Similarity=0.287 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
++..||.+|+.|-.+|..|..|+.+|++
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5778999999999999999999999886
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.00 E-value=0.52 Score=48.09 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+-++.+..++++.+.++.+++.++++++..+++++.++.|...|+.++...
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 556 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNK 556 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhh
Confidence 3444555667777777777777777777777777777777777777766553
No 34
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=92.91 E-value=0.17 Score=41.15 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+++++..++..|+.+|..|..+|..|+..++.-+.+-..++.+|+.+
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777776666666666654
No 35
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=92.57 E-value=0.15 Score=35.30 Aligned_cols=27 Identities=4% Similarity=0.244 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
+..||.+|+.|-.+|..|..|+.+|++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578999999999999999999999886
No 36
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=92.54 E-value=0.084 Score=51.05 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
..+.+|+.+++.|.+.|..|..++..+++++.+|+.|+..|
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777666666666666444444444443
No 37
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=92.47 E-value=0.46 Score=35.67 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
+.+|..++..|.+.|..|...+...+.++..|..|...|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777777777666666555555554443
No 38
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=92.19 E-value=0.16 Score=35.36 Aligned_cols=28 Identities=7% Similarity=0.388 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
++..||.+|+.|-.+|..|..|+.+|++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 5678999999999999999999999875
No 39
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.10 E-value=0.81 Score=51.79 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 014660 334 EKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 334 ~~L~~EN~~LkekL~~lq 351 (421)
..|+.||..|++++.++.
T Consensus 1026 ~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1026 SELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 40
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=92.10 E-value=0.17 Score=35.28 Aligned_cols=28 Identities=7% Similarity=0.318 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
++..||.+|+.|-.+|..|..|+.+|++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4578999999999999999999999875
No 41
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=92.07 E-value=0.68 Score=40.27 Aligned_cols=41 Identities=29% Similarity=0.466 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
..+|+.|+.|+..|..+|.....+.++|+.+|..|..+|..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 34566677777777777777777777777777777777653
No 42
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=91.71 E-value=0.21 Score=34.50 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
+..||.+|+.|-.+|..|..|+.+|++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 578999999999999999999998875
No 43
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=91.66 E-value=0.67 Score=34.79 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.++..|+.++..|..++.+|.+-+.+.+.|...|+++|..+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667778888888888888888888888888888888888765
No 44
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=91.52 E-value=0.47 Score=38.16 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
+++++||.|+..++.-...|-..+.+-+.++.+|..+.+.|.++|+.++.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46788999999888888889888988899899999999999998887663
No 45
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=91.52 E-value=0.21 Score=34.74 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
++..||.+|+.|-.+|..|..++.+|++-
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46789999999999999999999998863
No 46
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=91.24 E-value=0.017 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 014660 279 RELKRERRKQSNRESARRSRLRKQA 303 (421)
Q Consensus 279 rE~KR~RRk~sNRESARRSRlRKqa 303 (421)
...|..||+-+||++|++||+||.+
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3457788999999999999999854
No 47
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=91.22 E-value=0.76 Score=36.78 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.++..++..++.+|..|..+|..|+..++.-+.+-..++.+|+.+
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777777777766666666666666666666554
No 48
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=90.97 E-value=1.1 Score=36.78 Aligned_cols=35 Identities=34% Similarity=0.453 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 317 DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 317 ~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.||..|..+|..|.+++..|+.+|..|++-....|
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777788888877777788888877665443
No 49
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=90.84 E-value=2.1 Score=32.65 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+..|+.+...|..+...|..++..|..|...|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666666666665555555555555544
No 50
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=90.68 E-value=0.97 Score=38.46 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
..+++++..+.+|++++....+++..++..+..|..+...|+.+|.
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555566666666666666666666554
No 51
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=90.43 E-value=0.35 Score=45.04 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccccccccCCCCcchhhhhhhccCCCCcc
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIVLNEDKRVTPVSTENLLSRVNNSGTVD 385 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq--l~~~~E~~~~~~~~~~p~~~e~lls~vd~~~~~~ 385 (421)
-..-|..|..||..|..++.....++..|+.+.+.|++++...+ +....|-+. -+++|++.+....-.+
T Consensus 18 ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~---------i~~DL~e~LTGl~V~~ 88 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSE---------VIKDLYEYLCNVRVHK 88 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHSEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhh---------HHHHHHHHccCcEEEE
Confidence 33445555666666666666655555555556556655554322 222222222 4667777665544433
Q ss_pred ccccccccccc
Q 014660 386 RNMEEGGHLFE 396 (421)
Q Consensus 386 ~~~~~~~~~~~ 396 (421)
.-..+++.+|.
T Consensus 89 ~~ed~~~~~FD 99 (190)
T 4emc_A 89 SYEDDSGLWFD 99 (190)
T ss_dssp CCCCSSCEEEE
T ss_pred EEEcCCCeEEE
Confidence 33333434443
No 52
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=90.13 E-value=0.35 Score=32.78 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
++..|+.+|.+.+.||-+|.+++.+|..+|
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 356788899999999999988888887765
No 53
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=90.07 E-value=0.53 Score=35.35 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
..|+.|+.||..|+.++..|. .++..|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~-------~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIV-------EENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 445555555555555555554 46666666654
No 54
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=89.71 E-value=0.59 Score=35.10 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el 326 (421)
++|+.+++.|++++.+|+.++
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 55
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=89.66 E-value=3.4 Score=33.79 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014660 290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 353 (421)
Q Consensus 290 NRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~ 353 (421)
|=.||-.+-.|-|+ -+..++...+..|..+.++|.....++..|..|...|+.++.+++..
T Consensus 14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45556555555443 34556677888999999999999999999999999999999987643
No 56
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=89.61 E-value=0.25 Score=47.72 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
+.++..|+.++..|..++..|.+.+..++.|+..||++|..++.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77899999999999999999999999999999999999998863
No 57
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=89.16 E-value=0.57 Score=33.04 Aligned_cols=30 Identities=37% Similarity=0.550 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 316 IDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 316 ~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
-+||..|..+|..-.+++.+|+.||..|++
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 368899999999999999999999998864
No 58
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=88.45 E-value=3.9 Score=33.92 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
..|..++..|..+.+.|..||..+..++..+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555777777666554
No 59
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.93 E-value=8.7 Score=30.42 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.++.++.++...+..+..+..+|..|+.++..|+.+...+.++|..
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444443
No 60
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=87.64 E-value=2.8 Score=35.52 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
-..+.+|+.+|+.|+.||+.|+.+....++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467788888899888888888888777664
No 61
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=87.39 E-value=7 Score=33.74 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 298 RlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
...-+.++..|+.+|..|+.|...-+........ ||..|+.++..+
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~-------e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAAD-------DCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 4455666677777777766666665555444444 555555555544
No 62
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=87.17 E-value=4 Score=30.20 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.+..+++++.++..++.+...+..++..+.+.+...+.+...|+.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666666666666666666666666655554
No 63
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=87.07 E-value=3.4 Score=31.10 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+.+++|..+|.+|..+...|..++..|+........|-.+--++|.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567777777777777777777777777766666666555555554
No 64
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=86.93 E-value=4.9 Score=33.05 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
||+|+.-+-=++.+.+.|+.--+.| ..+|..-++++..|+.+...++.+|..|
T Consensus 25 rEaA~Ee~YfrqkekEqL~~LKkkl-------~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 25 REQAEEERYFRARAKEQLAALKKHK-------ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566655533333333333322222 3333333444444444555555555544
No 65
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=86.78 E-value=0.82 Score=31.81 Aligned_cols=28 Identities=7% Similarity=0.239 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
++..||.+|+.|-.++..|..|+.+|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999999999999998888875
No 66
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=86.64 E-value=3.8 Score=32.38 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
.+|+.....|..||..|+.+|..|+.++.
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555544444
No 67
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.61 E-value=12 Score=30.83 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.++.++..++.++..+..+|..|+.++..|+.+...+.++|
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 68
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.55 E-value=2 Score=43.50 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.++++++|+++++.|++++..|..++..|.+++.+.+.+-+.|..+|+++
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667777777777777777777777777777777776677777777664
No 69
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=86.52 E-value=1.9 Score=43.93 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+++++|++++++|++++..+..++..+.+++.+.+.+.+.|..+|.+++
T Consensus 9 ~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 9 STEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45677888888888888888888888888888777777777777777653
No 70
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.48 E-value=3.6 Score=32.70 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 290 NRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.-+.|...-..-...+.+.+.+...++.+...|..++..|...+..+.........+|....
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666677788888888888888888888888888888888888888888877543
No 71
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.66 E-value=1.3 Score=35.98 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014660 331 ENSEKLRQENAALLEKLK 348 (421)
Q Consensus 331 e~~~~L~~EN~~LkekL~ 348 (421)
.+.+.|..|+..|+.+|.
T Consensus 37 ~rvdELt~E~e~l~~El~ 54 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELE 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 334444444444444443
No 72
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.47 E-value=9.9 Score=34.75 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 278 ErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
|+.+.-...+++ -|+=.--|+||+. .+|...+..|+..+..|...+..|......|+.|+..|..+|..
T Consensus 12 ekQL~E~n~kLk-~EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 12 QKQLEEANDLLR-TESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443444443 3444445566666 66777777777777777777777777777777777666666654
No 73
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.45 E-value=4.8 Score=34.53 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.....+..|.....+|+.+...|+.+|.++
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444443
No 74
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=85.42 E-value=11 Score=29.12 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=35.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 286 RKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (421)
Q Consensus 286 Rk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lk 344 (421)
-..+||+-|-.-= +..+++|...+..-..+....+.+|..|+..+..|+.|...||
T Consensus 21 ia~knr~EaE~~y---~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 21 VAAKNLQEAEEWY---KSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344655544322 2235667777777666777777778888877777777777665
No 75
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.31 E-value=16 Score=31.29 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
..|+.++..|+..+..|...|..|...+..|+...+..-.-|
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SL 79 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSL 79 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhH
Confidence 344444444555554554444444444444444443333333
No 76
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=85.20 E-value=3.2 Score=32.84 Aligned_cols=31 Identities=13% Similarity=0.317 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.|..++..|..+...|+.+|..|+.+|..++
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555556666666666778888888876553
No 77
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=84.90 E-value=3.2 Score=33.79 Aligned_cols=35 Identities=37% Similarity=0.463 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 317 DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 317 ~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.||..|..+|..+.+++..|+.||..|++-+...+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888776654
No 78
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.79 E-value=9.1 Score=35.91 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN 340 (421)
+++.|+.+++.++.++..|..++..+.++.+.+..+.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l 127 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQ 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444444444433333
No 79
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.70 E-value=1.1 Score=35.54 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
.|+..|+.++..|+.+...|+.++..|+.++
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554444444433
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.55 E-value=9.2 Score=38.22 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+|.+.+.++++....+.+++.|+++.++++.++..|..++.+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 333333344444444444444444444444444444444433
No 81
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=84.34 E-value=6.3 Score=32.32 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 279 RELKRERRKQSNRESARRSRL---RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 279 rE~KR~RRk~sNRESARRSRl---RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
--.||.|=.+.=|.|-...|. --+.++++|+.+-..|+.+...|..|+..|+.-+.++-
T Consensus 16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 334455555544444433333 34567888899999999999999999998887665544
No 82
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.29 E-value=0.57 Score=37.88 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014660 318 ENASLKSEINQLSENSEKLRQENAALLEKLKSAQLG 353 (421)
Q Consensus 318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~ 353 (421)
|-..|+.+|..|.+++.+|+.||..||.-..--++.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~ 51 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQLE 51 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 445677778888888888888999999876543333
No 83
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=84.28 E-value=14 Score=31.98 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.++.++..|+.+...|..++..+...+..+..+...|+.++
T Consensus 220 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (284)
T 1c1g_A 220 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL 260 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443333333
No 84
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=84.26 E-value=16 Score=30.06 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=9.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 014660 285 RRKQSNRESARRSRLRKQAEAEEL 308 (421)
Q Consensus 285 RRk~sNRESARRSRlRKqa~leeL 308 (421)
....++|+....-....+++++.|
T Consensus 28 ~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 28 EDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333444444333333333333333
No 85
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.21 E-value=4.5 Score=32.40 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQ 328 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~ 328 (421)
|.+.+++|+.++.+++.++..|+.++..
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555444444444444433
No 86
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=84.17 E-value=7.8 Score=31.47 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
-+|..+++.|+.|...|+-.++.+.-++..|......+-..|
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555554444444444444443
No 87
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.00 E-value=1.5 Score=44.66 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+|..++..|+++...|..+.+.++.+...+..|...|+++++.++
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555666666666666666666666666666677777777777665
No 88
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=83.66 E-value=4.4 Score=29.83 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+||.+|+.|+.-...|..++++|-.++.. -...||++|..++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 57888888888888888888777665553 3467777776654
No 89
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=83.65 E-value=12 Score=32.06 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Q 014660 290 NRESARRSRLRKQAEAEELSRKVDSLID---ENASLKSEINQLSENS-------EKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 290 NRESARRSRlRKqa~leeLE~rVe~L~~---EN~~L~~el~~L~e~~-------~~L~~EN~~LkekL~~lq 351 (421)
|=.+|.+.=..|+..|++|++++..++. ....|+.++...+..+ +++-.|...|.++|..++
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 3445666666677777777777776666 4455666555444333 445556666666666554
No 90
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=83.47 E-value=4.3 Score=32.59 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+-+.++..|+....---+-.++|..++-.|-.||..|.++|..++
T Consensus 28 ~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 28 KSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 3333444444444444444467788888888999999999998776
No 91
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=83.45 E-value=12 Score=31.95 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
-+.+.+.+++.|......|..+|..|.+++...+..|..|...-..+
T Consensus 63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 63 NLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666655555555555544443
No 92
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=83.38 E-value=8.4 Score=35.73 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKL 336 (421)
Q Consensus 322 L~~el~~L~e~~~~L 336 (421)
|+..|..|...+..|
T Consensus 107 l~~~ireLEq~NDdl 121 (189)
T 2v71_A 107 LHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHH
Confidence 333333333333333
No 93
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=83.31 E-value=4.5 Score=36.50 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
++.|..++..|+-++..|..++..|++++..|.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555554444
No 94
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.23 E-value=5.5 Score=33.51 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 014660 330 SENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 330 ~e~~~~L~~EN~~LkekL~~l 350 (421)
+.+...++..|..|+++|.+.
T Consensus 75 r~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 445566677777777777653
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.10 E-value=2.5 Score=44.77 Aligned_cols=17 Identities=12% Similarity=0.136 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHHHHHhH
Q 014660 275 IQNERELKRERRKQSNR 291 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNR 291 (421)
+.-|++++....+++|+
T Consensus 56 dkqErDltkrINELKnq 72 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNS 72 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhcCcHHHHHHHHHHH
Confidence 44566666665555554
No 96
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=82.97 E-value=2 Score=34.38 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~ 335 (421)
|-+++...+.+++.|+.+..++..+|..|+.+|.+
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555444444444443
No 97
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=82.93 E-value=5.2 Score=32.84 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 317 DENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 317 ~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.||..|..+|..+.+++..|+.||..|++-....
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~ 71 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777655543
No 98
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=82.88 E-value=2.2 Score=34.18 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014660 330 SENSEKLRQENAALLEKLK 348 (421)
Q Consensus 330 ~e~~~~L~~EN~~LkekL~ 348 (421)
.++.+.|+.|+..|+.+|.
T Consensus 60 ~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 60 VHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333344445555555544
No 99
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.84 E-value=17 Score=29.31 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+-.....+|+.+...|.++...|..++..+.+.|..|......|-.+|.+++
T Consensus 32 k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 32 KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556788889999999999988899999999999999999999998875
No 100
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.82 E-value=5.4 Score=32.93 Aligned_cols=10 Identities=10% Similarity=0.112 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 014660 337 RQENAALLEK 346 (421)
Q Consensus 337 ~~EN~~Lkek 346 (421)
..|...|..+
T Consensus 73 ~dE~~Sl~~q 82 (96)
T 3q8t_A 73 DDELKSVENQ 82 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 101
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=82.73 E-value=5.4 Score=32.29 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 319 NASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 319 N~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
...|..+...+..+...|+.+|..|+.+|..++
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666677778888888888765
No 102
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.20 E-value=6.3 Score=32.42 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 311 KVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
++..++.++..+..++..|+.++.
T Consensus 31 ~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 31 DKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333333333333333333333333
No 103
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=82.14 E-value=20 Score=29.58 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.+.|..--..-+..+..++.+...++.+...|..++..|..++..+.......+.+|.
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455555555555555555555555555555544444444444443
No 104
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=82.11 E-value=2.7 Score=30.52 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el 326 (421)
+....+||.+|..|+.||+.||+-+
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4456788899999999998888755
No 105
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=82.01 E-value=5.8 Score=30.44 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014660 331 ENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 331 e~~~~L~~EN~~LkekL~~ 349 (421)
.+...|+.+|..|+.++..
T Consensus 37 ~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 37 DKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444333
No 106
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.60 E-value=18 Score=32.99 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 287 KQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 287 k~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el 326 (421)
++.-=+.=||.|.+-.+.+.+|+.++..|+.|...++..+
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344456666666666666666665555555544433
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.38 E-value=13 Score=37.20 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 297 SRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 297 SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
-|.|.+++++....+.+.|++||..|+.++..+..+.......
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 3344455555555566666666666666555555544444333
No 108
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=81.24 E-value=12 Score=28.30 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
+..|+.+...|..+...|..++..|+.|+..|+..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 109
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=81.24 E-value=0.7 Score=43.99 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 014660 315 LIDENASLKSEINQLSE---NSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 315 L~~EN~~L~~el~~L~e---~~~~L~~EN~~LkekL~~l 350 (421)
|.+||.+|++|+.+|+. ++..|+.||.+||+.|...
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDIT 62 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34444444444444443 3456788999999987643
No 110
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=81.07 E-value=2.7 Score=29.32 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014660 329 LSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 329 L~e~~~~L~~EN~~LkekL~ 348 (421)
.++.++.|+.+|..|.+++.
T Consensus 12 ~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHH
Confidence 33333333345555555544
No 111
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=80.89 E-value=11 Score=28.25 Aligned_cols=38 Identities=34% Similarity=0.253 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
..+..|+.+...|..+...|..++..|+.|+..|+..|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666666677777777777777777766666655
No 112
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=80.85 E-value=21 Score=28.93 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
..|++++-|.+--+.|+.=-+.|..-|.+|.++...|......|+.+.+++.
T Consensus 22 q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 22 RAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888777888887788888888888888888888999998888765
No 113
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=80.61 E-value=6.8 Score=33.31 Aligned_cols=57 Identities=12% Similarity=0.225 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccccccc
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ--LGNKQEIV 359 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq--l~~~~E~~ 359 (421)
=+++-|..+++.++.....|+.++.....+++.+......|+.++..++ +.+-.++|
T Consensus 30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI 88 (103)
T 4h22_A 30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEML 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999998875 44444443
No 114
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=80.46 E-value=8.2 Score=33.58 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 318 ENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
...+|+.||..|.+++..+..|..+||.+...+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 355555666666666666666666666555544
No 115
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=80.43 E-value=7.1 Score=32.06 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e 331 (421)
.+|..|+++|..|..++..++.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3555666666666555555544
No 116
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=80.39 E-value=4.9 Score=32.30 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQL------SENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L------~e~~~~L~~EN~~LkekL~~ 349 (421)
-|.+++.|+.+++.|+.+...|..++..- -.++..|..+...|..+|..
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999988888887531 23455555566666666554
No 117
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=79.99 E-value=11 Score=27.85 Aligned_cols=46 Identities=11% Similarity=0.193 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
...|+..++.++.+...++.++..+..++.++..+....++.|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655666666666666666666666666666666554
No 118
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=79.75 E-value=1.7 Score=32.75 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
+.|+++...++.|..||..|+.++..|++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666666666665554
No 119
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.68 E-value=5.7 Score=29.26 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN 340 (421)
||..-+||+- ..|...--+|+..-+.|.+-|..|+.++..|+.|.
T Consensus 3 arnaylrkki--arlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 3 ARNAYLRKKI--ARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp SHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHH--HHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444445442 44444555555555666666666666555555443
No 120
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=79.56 E-value=4.4 Score=32.60 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++||.+|+.|+.-...|..++++|-.++... ...||++|..++
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE 45 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVE 45 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4678888888888888888888776665533 356666666554
No 121
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=79.28 E-value=6.8 Score=31.16 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=39.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 285 RRKQSNRESARRSRLRKQAEAEELSRKVDSL---IDENASL---KSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 285 RRk~sNRESARRSRlRKqa~leeLE~rVe~L---~~EN~~L---~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.|+.....+-|+-|.+=...+.+|..-|-.. ...-.-| ..-|..|+.+...|..|+..|+.+++..+
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444455566666666567777776655431 0011112 22355777788888888888888887654
No 122
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.13 E-value=25 Score=28.80 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.+.|..--..-+..+..++.+...++.+...|..++..|..++..+......+..+|
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445555555555555555555555555555444444444444333
No 123
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=79.07 E-value=5.2 Score=30.69 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 291 RESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 291 RESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
|---+-+|+|... ..|..+|.+|+..+.+..+||.+|..
T Consensus 8 Rse~q~~kLKq~n--~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 8 RSERQLLRLKQMN--VQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp ---CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444454443 78999999999999999999998875
No 124
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=78.71 E-value=13 Score=30.43 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 290 NRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
.+.+-++-=.+=+...-.++.++...+..|..|..++..|++++..|+.+
T Consensus 25 AKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 25 TRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34444444444455566777888888888888888888888877765543
No 125
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=78.68 E-value=7.3 Score=36.69 Aligned_cols=33 Identities=33% Similarity=0.449 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 318 ENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
||..|..+|..|.+++..|+.||..|++-+..+
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555665555554443
No 126
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=78.26 E-value=11 Score=32.24 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+.+-..|.+++.|+.++.+|+.++.........|-.+|+.|..++.
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~~~ 56 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHT 56 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 3444455567777777777777777666666666666776665443
No 127
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.07 E-value=19 Score=29.46 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
.++++|..+++.+..++..|..++..|..
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555444444444444433
No 128
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=78.02 E-value=7.3 Score=31.19 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++|+.|+..|+.....+..-|..|...+.+...+...|+.+|..+.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~ 55 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 55 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888888888888888888887763
No 129
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.52 E-value=18 Score=35.95 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 322 LKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|.+++.+-..++++|+.|...|..+|++++
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566677777777777776653
No 130
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.48 E-value=7.6 Score=29.66 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
++|+.+...|+.+...|+.|+..|+
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 131
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.23 E-value=31 Score=28.91 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++..|+.++.....+...|..++..-+......+.++..|..+|.+|
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555555555555555555544
No 132
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.10 E-value=4.7 Score=32.69 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
+|+..|+.+...|..+...|+.+...|+.++
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl 82 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444444444444444433
No 133
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=76.84 E-value=3.3 Score=39.42 Aligned_cols=45 Identities=20% Similarity=0.040 Sum_probs=21.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 281 LKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSE 325 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~e 325 (421)
.||-||.++-=.==.|-|+-|...++++-.+.+.+..+...|..+
T Consensus 119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~E 163 (250)
T 2ve7_C 119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAA 163 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777765433333445445444444444444433333333333
No 134
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=76.19 E-value=5.3 Score=27.07 Aligned_cols=24 Identities=42% Similarity=0.434 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALL 344 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~Lk 344 (421)
.|++|+..|+.++..|.-|...|+
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 135
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=76.18 E-value=9.4 Score=30.68 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 281 LKRERRKQSNRESARRSRL---RKQAEAEELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 281 ~KR~RRk~sNRESARRSRl---RKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
.||.|=-+.=|-|-...|. --+..+++|+.+-..|+.+...|..|+..|+.-
T Consensus 18 ~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 18 IRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333333333 334566777777777777777777777777653
No 136
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=75.53 E-value=29 Score=28.03 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+..+..|+.+++.-+.+-..++.++..+.+.+.--..|...||+.|..+
T Consensus 26 e~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 26 EHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3445666666666666677777777777777777777888888887754
No 137
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=75.10 E-value=29 Score=28.10 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 296 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 296 RSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
++=..=+..++.|+.+|..|+-.+..+..+++.|.++...+..+...+..
T Consensus 20 q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~ 69 (83)
T 2xdj_A 20 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSS 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666777777777777777777777777777777666666544433
No 138
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=74.98 E-value=2.3 Score=33.90 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQE 357 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E 357 (421)
++|.+++..+++.+..|..=+..-...+..|..+|..||++|..++..+.+|
T Consensus 18 eel~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnqeRe 69 (71)
T 3bbp_D 18 EELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQERE 69 (71)
T ss_dssp -----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 3455555555555555555555555556666677777777777665544433
No 139
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=74.85 E-value=35 Score=29.30 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.+.-|+++|+..+..-..=|.--+++..+.+.|..++..|+.++..+
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 367778888888888777767777778888888888888888877543
No 140
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=74.37 E-value=4.4 Score=28.20 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 316 IDENASLKSEINQLSENSEKLRQENAA 342 (421)
Q Consensus 316 ~~EN~~L~~el~~L~e~~~~L~~EN~~ 342 (421)
+.+|....+.|..|+.++..|+.|.+.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444443
No 141
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=74.14 E-value=32 Score=32.13 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+++++|+.++..|+.+...+..++..+..+..+++.+...+++++..
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455444444444444444444444444444444444443
No 142
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=73.79 E-value=7.9 Score=36.39 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=6.9
Q ss_pred hhhhhhhhcCCC
Q 014660 402 GAKLHQLLDASP 413 (421)
Q Consensus 402 ~~kl~qll~~~~ 413 (421)
.+.|||-+..-+
T Consensus 169 DP~~HeAv~~v~ 180 (213)
T 4ani_A 169 DPYLHQAVMQAE 180 (213)
T ss_dssp CTTTEEEEEEEC
T ss_pred CHHHceeeeeec
Confidence 356777665433
No 143
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=73.67 E-value=22 Score=29.18 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 291 RESARRSRLRKQ--AEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 291 RESARRSRlRKq--a~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
++..+-..+|++ .+++.-..+++.|+.+...++..|..|.
T Consensus 37 kekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445555 4444444555555555444444444443
No 144
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=73.62 E-value=9.4 Score=32.47 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH---HHHHHHHHHHHHH---HHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVD-------------SLIDE---NASLKSEINQLSE---NSEKLRQENAA 342 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe-------------~L~~E---N~~L~~el~~L~e---~~~~L~~EN~~ 342 (421)
|+.+|+...-.+-|+-|.+=...+.+|..-|- .|..- ...|+.++..|++ +...|+.+|..
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~ 102 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANRH 102 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666665666666665333 23222 2234444444443 34567788888
Q ss_pred HHHHHHHhh
Q 014660 343 LLEKLKSAQ 351 (421)
Q Consensus 343 LkekL~~lq 351 (421)
|..+|++++
T Consensus 103 L~~riqeLE 111 (118)
T 4ati_A 103 LLLRVQELE 111 (118)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 888888765
No 145
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.44 E-value=4.9 Score=32.02 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
-+|+..|+.++..|+.++..|+.++...+
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46777777777777777777777666543
No 146
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=73.28 E-value=5.6 Score=26.92 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
++..|..+|..|+..|-..++++..|+.+|
T Consensus 2 evqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 356678888888888888888888887766
No 147
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=73.25 E-value=5.1 Score=29.99 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 325 EINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 325 el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+..|..++..|+.||..|+.++..++
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777778888888887765
No 148
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=73.20 E-value=4.3 Score=32.87 Aligned_cols=43 Identities=33% Similarity=0.466 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
++|=.||++|..|+..|+.|+..+++-..+++..+..|.++|+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777777666666666666665554
No 149
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=72.96 E-value=34 Score=27.25 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+..+..|+.+++.-+.+-..++.++..+.+.+.--..|...|++.|..+
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3445666666666666666677777777777777777777777777654
No 150
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=71.99 E-value=26 Score=30.11 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSE----INQLSENSEKLRQENAAL 343 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~e----l~~L~e~~~~L~~EN~~L 343 (421)
++.|..+|+.|+.++..|..| +..|+.++..|+.|+..=
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444332 233444444444444443
No 151
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.43 E-value=4 Score=33.00 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
+|.|..++.+|...|..|..|...|+
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 152
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=69.61 E-value=12 Score=35.04 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQ 328 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~ 328 (421)
..|..+++.|+.+...|..++++
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE~ 164 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFEK 164 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 153
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=69.07 E-value=18 Score=30.78 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|..++..++.+...|..++..|+..+..|+.|-..-=.+|.+++
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555556555555665554
No 154
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=68.99 E-value=9.1 Score=27.05 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
|-.++....++...|+.+|..|..+|.
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556667777777777764
No 155
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=68.54 E-value=19 Score=26.10 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 325 EINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 325 el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++..|..+++.|+.....|+.+|+.
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555566655554
No 156
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=68.30 E-value=4.1 Score=26.73 Aligned_cols=17 Identities=47% Similarity=0.511 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014660 315 LIDENASLKSEINQLSE 331 (421)
Q Consensus 315 L~~EN~~L~~el~~L~e 331 (421)
|++.|..|++|+..|.=
T Consensus 5 lkqknarlkqeiaaley 21 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEY 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 44444444444444433
No 157
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=68.15 E-value=2.3 Score=40.50 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
....++.+++..++++|..||+.|+.+|++|+.+..+.
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~ 181 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDED 181 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444455556666666666666666666555554443
No 158
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=68.10 E-value=19 Score=37.51 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 298 RLRKQAEAEELSRKVDSLIDENA----------SLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 298 RlRKqa~leeLE~rVe~L~~EN~----------~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
|+.-+.++++|+.+.+.+.++.. .|..++..|++++..|+.+...|.++|..
T Consensus 42 ~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 42 WVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555554443 34444555555555555555555555543
No 159
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=68.08 E-value=25 Score=30.64 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
.++|+.++..|+.+|..|..++..++.++..|
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888888888888777444
No 160
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=67.99 E-value=14 Score=36.69 Aligned_cols=44 Identities=14% Similarity=-0.011 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
++..||..|...+.+...|+..+..++.++.+|..+...|+.++
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555566555555555555555555555444
No 161
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.98 E-value=14 Score=34.50 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lk 344 (421)
.+..|..++..|.+++.....|+..|++++..|+.+-..+.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34555555555555555555555555555555544443333
No 162
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=67.86 E-value=53 Score=33.18 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
..|..++..|++++..|+.+...|.++|..
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666654
No 163
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=67.80 E-value=21 Score=37.21 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
|..++..|++++..|+.+...|.++|
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444
No 164
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=67.54 E-value=7 Score=38.24 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAA 342 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~ 342 (421)
+++++.|+++|..|++|+++|+++...+...|..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~ 217 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAE 217 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4456666666666666666665555555544333
No 165
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=67.53 E-value=40 Score=35.18 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014660 334 EKLRQENAALLEKLKSA 350 (421)
Q Consensus 334 ~~L~~EN~~LkekL~~l 350 (421)
..|..|...|+++|+.+
T Consensus 119 ~~l~~~~~~l~~~i~~l 135 (501)
T 1wle_A 119 QSLRARGREIRKQLTLL 135 (501)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555544
No 166
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=67.45 E-value=25 Score=28.67 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLK 323 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~ 323 (421)
++.+|.-+|..|+.|-.+..
T Consensus 27 Ei~~Lr~kv~elEnErlQyE 46 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYE 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 167
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=67.32 E-value=6.2 Score=36.50 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
.++.|-.++..|+.+|..|.+++.+|+.+..
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554444444333
No 168
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=67.26 E-value=31 Score=36.71 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 298 RlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
...+.++.++|++++..|+.+...-...|+.|+..++.++.+.++|..-|.
T Consensus 105 dNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 105 DNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555677777666666666556666666666666666666655554
No 169
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=67.10 E-value=35 Score=27.04 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+.+...+..|+.+...++.++.....++..|..=.-.|-.+|...
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatY 52 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAY 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555555544444455555443
No 170
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=66.89 E-value=24 Score=25.99 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e 331 (421)
.++..|+..|-+|...-+.|..
T Consensus 10 kkiarlkkdnlqlerdeqnlek 31 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEK 31 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHhhHHH
Confidence 3334444444333333333333
No 171
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=66.58 E-value=34 Score=27.54 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 323 KSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 323 ~~el~~L~e~~~~L~~EN~~Lke 345 (421)
.....+|...-..|+.+...|.+
T Consensus 62 Ee~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 62 EDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 172
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=66.49 E-value=14 Score=25.01 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
+..|.+++..|+.|...|+-|+..|++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555555555555555555443
No 173
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=66.42 E-value=30 Score=28.22 Aligned_cols=45 Identities=29% Similarity=0.251 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.++|-+++..|+-....|..|-.+...++..-..|.+.|+.+|..
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345666666666666666666666666666666666666666643
No 174
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=66.22 E-value=43 Score=27.05 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+|-++.+..-..+++.|++-...|..--..|..-+.+|..|-..|...|.-++
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk 66 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLK 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666665543
No 175
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=66.12 E-value=0.13 Score=42.80 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 014660 280 ELKRERRKQSNRESARRSRLRKQ 302 (421)
Q Consensus 280 E~KR~RRk~sNRESARRSRlRKq 302 (421)
..+..||+-+||.+|++||.||.
T Consensus 64 lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 64 LIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHhhhhHHHHHHcchhhc
Confidence 34668899999999999999984
No 176
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=65.65 E-value=4 Score=26.76 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 313 DSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 313 e~L~~EN~~L~~el~~L~e~~~~L 336 (421)
+.|+-||..|.+++..|++++..|
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 346667777777776666655544
No 177
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=65.60 E-value=8.6 Score=39.06 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.+++|+++.++++.++..|.+++.....+..+|..+...|+..|+
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 18 RTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 335555555555555555555555555555555555555555443
No 178
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=65.60 E-value=25 Score=29.48 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
.|+.+++.|+.....++.++..+.+
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 179
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=65.54 E-value=30 Score=35.50 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
|..++..|++++..|+.+...|.++|..
T Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 74 LLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555544
No 180
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.26 E-value=24 Score=25.64 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|.+|+.|...|..+.+.|+.+......-..-|..+|.+++
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555544444555555555544
No 181
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.23 E-value=21 Score=35.98 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
-++++++|+.+++.|+.++..|.+++........+|-.+...||..|+-
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 3445566666666666666677666666666666666666666655543
No 182
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=65.01 E-value=15 Score=34.04 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
=-..+.+|+.++..|+++|+.|+.+.++..++++
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455678888888888888888888888877654
No 183
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=64.69 E-value=12 Score=31.48 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
.++.|..+++.|+.||..|++++..|.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555554444444
No 184
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=64.47 E-value=47 Score=30.16 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014660 326 INQLSENSEKLRQENAA 342 (421)
Q Consensus 326 l~~L~e~~~~L~~EN~~ 342 (421)
|+.|.+++..|+.+...
T Consensus 115 I~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 115 INAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444333333333333
No 185
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=64.41 E-value=26 Score=26.25 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.++++|..+.+.|..++..|+.....|+.+...-+++.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666665555555554444443
No 186
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.02 E-value=10 Score=32.35 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
+..|+.+++.|+..+..|...|..+.
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34445555555555555555444443
No 187
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=64.01 E-value=13 Score=25.77 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+|..+++.|-.+...|+.|...||+-|
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445555555555555555666666544
No 188
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=63.98 E-value=12 Score=29.72 Aligned_cols=48 Identities=8% Similarity=0.165 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+.+.+++..+++.|++|..-.-.+|..+.-.|+..+.++..|..+|..
T Consensus 15 k~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ 62 (75)
T 3mtu_A 15 KLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVD 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345666777777777777766667777777777666666666666654
No 189
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=63.98 E-value=88 Score=30.10 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNK 355 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~ 355 (421)
..++.+|..+++.|..--..+.++|+.|++.=..|+.++..++.+|..++.-.+
T Consensus 176 ~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qEy~l 229 (242)
T 3uux_B 176 LSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEEYGL 229 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Confidence 468899999999999999999999999999999999999999999998875554
No 190
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=63.86 E-value=67 Score=27.23 Aligned_cols=63 Identities=14% Similarity=0.202 Sum_probs=28.5
Q ss_pred HHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 285 RRKQSNRESARRSRLRKQ----------AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 285 RRk~sNRESARRSRlRKq----------a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+|.-+|+.+-+.--.+=. ++++..++++.+=.+|-.++..+++.|-.++-.|+.|...|+.-+
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455666666553222222 233333334433333434444444444444445555555555443
No 191
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=63.83 E-value=3.7 Score=35.28 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQ 328 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~ 328 (421)
.-+|+|+.++..|+-||..|+++|..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34789999999999999999998863
No 192
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=63.82 E-value=77 Score=27.91 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=47.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQ---------------AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKq---------------a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
.|.++.+-||.-+-.-|.... ...++...++..++.+......++.....+|..|+.+...+-..
T Consensus 37 eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~n 116 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNN 116 (147)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777778877766665432 23455666666777777777777777777777777777777777
Q ss_pred HHHhh
Q 014660 347 LKSAQ 351 (421)
Q Consensus 347 L~~lq 351 (421)
|+.+.
T Consensus 117 lKsLE 121 (147)
T 2b9c_A 117 LKSLE 121 (147)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 77664
No 193
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=63.80 E-value=16 Score=36.27 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=5.6
Q ss_pred hhhhhhhcC
Q 014660 403 AKLHQLLDA 411 (421)
Q Consensus 403 ~kl~qll~~ 411 (421)
.|||+|-..
T Consensus 153 e~ih~LT~~ 161 (323)
T 1lwu_C 153 EKIHLLTGQ 161 (323)
T ss_dssp HHHHHHHTT
T ss_pred cceeccccC
Confidence 567777643
No 194
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=63.79 E-value=25 Score=31.97 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 014660 332 NSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 332 ~~~~L~~EN~~LkekL~~lq 351 (421)
++++|..|...|+.+|...+
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555544433
No 195
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=63.15 E-value=16 Score=25.68 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+|..+++.|..+...|+.|..+||..|..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 45555566666666666677777776653
No 196
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=63.14 E-value=41 Score=26.66 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 296 RSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 296 RSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+-|...+..+..|+.++..++.+-.....+...|-.-...|..|...-|.-|.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777888888888888888888888888888877888888888876654
No 197
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.98 E-value=72 Score=27.24 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 295 RRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
|..+..=+.|+-+||+.-+.|+........-|..+..++......|..|..+|..
T Consensus 48 r~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 48 RAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444566666666666666666666667778888888888888888888865
No 198
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=62.95 E-value=25 Score=28.49 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 314 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.|+.....|..++..|..++..++.+...|+.+|..+
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666666676666654
No 199
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=62.82 E-value=6.4 Score=29.20 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el 326 (421)
.+++.|+.+++.|+.+...|+..|
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888777776654
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.68 E-value=13 Score=37.86 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
.++..|+++.+.|+.|+..|+.++..+++++..++.|...|+.
T Consensus 49 ~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 49 FKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556788888888889999999999999999888888877664
No 201
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.62 E-value=23 Score=36.13 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
++.++||++...|+.....-...|..|+..++.++.+.++|...|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665544433356666666666666665555555
No 202
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=62.55 E-value=18 Score=34.36 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
++..|++++++.+.|+..++..+++.+++..+++.+-..+
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKH 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677888888888888888888877777666555554443
No 203
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=62.40 E-value=65 Score=34.16 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 292 ESARRSRLRKQAEAEELSRKVDSLI 316 (421)
Q Consensus 292 ESARRSRlRKqa~leeLE~rVe~L~ 316 (421)
|.|+|-=.|-+++|++.+.-++.++
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~ 341 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQ 341 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444444333
No 204
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.12 E-value=71 Score=26.93 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=9.4
Q ss_pred chhhhhhHHHHHHHHHH
Q 014660 272 ETWIQNERELKRERRKQ 288 (421)
Q Consensus 272 e~~~qdErE~KR~RRk~ 288 (421)
..|..-|.+++..||++
T Consensus 13 ~~~~~ye~~I~~LR~qi 29 (119)
T 3ol1_A 13 RLGDLYEEEMRELRRQV 29 (119)
T ss_dssp CCTHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 34445556666666655
No 205
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=61.66 E-value=47 Score=35.15 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
++..|++++++++|..+-.+-+++++++..
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777666666666666544
No 206
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=61.39 E-value=28 Score=27.62 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~ 335 (421)
.+|+..|+.+...|..++..|+.++..|+.++.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777777777777777777777666665543
No 207
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=60.92 E-value=11 Score=25.14 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014660 311 KVDSLIDENASLKSEINQ 328 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~ 328 (421)
-+..|+.||.+|+.++++
T Consensus 7 llasleaenkqlkakvee 24 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEE 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 208
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.18 E-value=71 Score=28.68 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 014660 331 ENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 331 e~~~~L~~EN~~LkekL~~l 350 (421)
.+...++..|..|+.+|.+.
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREK 127 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666553
No 209
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=60.15 E-value=12 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQL 329 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L 329 (421)
.+.||.++..|+...+.|.++++.|
T Consensus 3 wealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444443
No 210
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=59.96 E-value=6.6 Score=34.09 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
+|..+|+.|..|+..|++++..|+.++
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666655555555555543
No 211
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=59.80 E-value=79 Score=26.70 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+|+..+.+|......|..+-=.|..+...-.-|...|+.++.++
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 45555666655555566555566666666667888888888776
No 212
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=59.78 E-value=28 Score=32.76 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLN 361 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~~~ 361 (421)
+.+|+.+.-...++.+.|+....+|.+|+..|+..|+.++-...+.+.+.
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe 81 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIK 81 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHH
Confidence 44566677777778888888888899999999999999986666665443
No 213
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=59.53 E-value=62 Score=27.05 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Q 014660 289 SNRESARRSRLRKQAEAEELSRKVDSLI---DENASLKSEINQLSENSE-------KLRQENAALLEKLKSAQ 351 (421)
Q Consensus 289 sNRESARRSRlRKqa~leeLE~rVe~L~---~EN~~L~~el~~L~e~~~-------~L~~EN~~LkekL~~lq 351 (421)
.|-.+|-..=..|+..+++|...+..++ ..+..|+.++...++.+. ++-.|...|.++|..++
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556677777778888888888877777 455567777665554443 33344444555554443
No 214
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=58.55 E-value=46 Score=24.72 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
|+-.+.|..+|..|+.....+.+|+.+|+.
T Consensus 10 Ke~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 10 KQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 344577888888888888888888888764
No 215
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.71 E-value=9 Score=39.10 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+|+.|...|+.|...|+.++.++..++..++.+...++++++.++
T Consensus 29 ~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~ 73 (434)
T 4b4t_M 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNR 73 (434)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444455555555555555555555556666666666543
No 216
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=57.54 E-value=44 Score=26.21 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 327 NQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 327 ~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
..|+.++.+|..|...|...|..
T Consensus 35 aKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 35 TKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 46677777777777777777754
No 217
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=57.01 E-value=48 Score=31.45 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
..+..++..|++..+.++.|...++.++.+.+.+.++||++-.
T Consensus 174 ~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 174 SEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555555555543
No 218
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=56.95 E-value=26 Score=28.01 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
..++.++..+++.|..--.-+..+++.|.+.=..|+.+...+..+|..+|
T Consensus 20 ~sEI~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 20 MSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888888888888877777777777777776655
No 219
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=56.65 E-value=24 Score=24.77 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+|..+++.|..+...|+.|..+|+..|..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 34455555555555555666666666553
No 220
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=56.44 E-value=1.1e+02 Score=31.87 Aligned_cols=9 Identities=33% Similarity=0.394 Sum_probs=5.6
Q ss_pred hhhhhhhcC
Q 014660 403 AKLHQLLDA 411 (421)
Q Consensus 403 ~kl~qll~~ 411 (421)
.|||+|-..
T Consensus 301 e~ih~LT~~ 309 (464)
T 1m1j_B 301 DKISQLTKI 309 (464)
T ss_dssp HHHHHHHTT
T ss_pred cceeeccCC
Confidence 567777643
No 221
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=56.13 E-value=83 Score=25.81 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=36.8
Q ss_pred CchhhhhhHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 271 PETWIQNERELKRERRKQSNRESARR---SRLRKQAEAEELSRKVDSLIDENASLKSEINQL 329 (421)
Q Consensus 271 ~e~~~qdErE~KR~RRk~sNRESARR---SRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L 329 (421)
++++-.-|.+.+-...-+..+.+.-. ....|++.+.+++..+++.+.-..+|.-|+..+
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45666677777666555555544332 225566667778777777777777766666543
No 222
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=55.94 E-value=11 Score=28.21 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 326 INQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 326 l~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|.++.+.+..|..||..|+++|..++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667777777776554
No 223
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=55.82 E-value=38 Score=31.11 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
-++.|..|+++|..|..++...++++..+..+
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544444433
No 224
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=55.71 E-value=47 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
+|...++.|..|+..|..++..+.+++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666777777677666666666665554
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=55.67 E-value=82 Score=33.38 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=4.7
Q ss_pred CCCCccccC
Q 014660 58 APQPYMWGP 66 (421)
Q Consensus 58 ~phPYMWG~ 66 (421)
+-.-|||+.
T Consensus 75 T~gi~~~~~ 83 (592)
T 1f5n_A 75 TKGIWMWCV 83 (592)
T ss_dssp CCSEEEEEE
T ss_pred eeEEEEeec
Confidence 344566653
No 226
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.39 E-value=39 Score=28.71 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lk 344 (421)
..|-++.-..++|...|+.++..|+..+...+.-...|.
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g 45 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELG 45 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555544444333333
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=55.37 E-value=71 Score=33.86 Aligned_cols=8 Identities=50% Similarity=0.422 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 014660 291 RESARRSR 298 (421)
Q Consensus 291 RESARRSR 298 (421)
+|+|++..
T Consensus 496 ~e~~~~~~ 503 (592)
T 1f5n_A 496 AESAQASA 503 (592)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45554333
No 228
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=55.11 E-value=43 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
...++.|..|+..|..++..+.+++..+
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~ 30 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRL 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555554444444444433
No 229
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=55.03 E-value=44 Score=30.44 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014660 296 RSRLRKQAEAEELSRKVDSL 315 (421)
Q Consensus 296 RSRlRKqa~leeLE~rVe~L 315 (421)
+-|.+|+-.++....++..|
T Consensus 151 kKR~~k~lDyD~~~~~l~kl 170 (251)
T 2fic_A 151 AKRGRKLVDYDSARHHYESL 170 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444
No 230
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=54.76 E-value=11 Score=25.15 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 014660 329 LSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 329 L~e~~~~L~~EN~~LkekL~~l 350 (421)
|..-+..|+.||.+|+.++.++
T Consensus 4 lnallasleaenkqlkakveel 25 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788888888888764
No 231
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.43 E-value=66 Score=40.87 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 316 IDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 316 ~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+++...|.++|+.|+++++++..|.+.|+.++..
T Consensus 2034 ~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444445555544443
No 232
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=54.18 E-value=1.1e+02 Score=31.80 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014660 299 LRKQAEAEELSRKVDSLIDEN 319 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN 319 (421)
+.-+.++++|..+.+.+.++.
T Consensus 47 r~~~~~~~~l~~~rN~~sk~i 67 (484)
T 3lss_A 47 RRTQFLTEASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 233
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=54.17 E-value=25 Score=24.25 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+|..+++.|-.+...|+.|...||.-|
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445555555555555555666665544
No 234
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=53.81 E-value=9.3 Score=39.07 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+..++..|+........+|..|+..+..+......|+++|..+.
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444444444444444455666666666666666666776666554
No 235
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=53.75 E-value=1.3e+02 Score=27.44 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=7.2
Q ss_pred HHHHHHHHHhHHHHHH
Q 014660 281 LKRERRKQSNRESARR 296 (421)
Q Consensus 281 ~KR~RRk~sNRESARR 296 (421)
+.+++-+++-++++|.
T Consensus 32 le~ek~~l~~~e~~r~ 47 (169)
T 3k29_A 32 LELEQEKLRERESERD 47 (169)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 236
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=53.49 E-value=36 Score=32.53 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 279 RELKRERRKQSNRESA-RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 279 rE~KR~RRk~sNRESA-RRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
...|-.-.-++|||.. +.+|.||+.-.+++. .|+... --..+|..|++++..++.|+....++|.++
T Consensus 90 d~yR~~LK~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~ 157 (234)
T 3plt_A 90 DQYRVTLKSIRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNI 157 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3344555567788865 566666655444443 333211 112344555555555555555444455443
No 237
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=53.47 E-value=19 Score=28.37 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
|.+.+.+||..++.-..++..|+.++.+++.
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888777777777777766654
No 238
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=53.46 E-value=1e+02 Score=28.79 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDS 314 (421)
Q Consensus 278 ErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~ 314 (421)
++...+.-+-+..|+-|-+..+++++.++.|..+...
T Consensus 99 ~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~r 135 (235)
T 2odv_A 99 EKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQM 135 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777778889999999999999999999877763
No 239
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=53.46 E-value=6.6 Score=38.95 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+++..||.+|..++++...|+..+..+++++.+|......|..++.
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~ 49 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 49 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777777777777777676666666666555555554443
No 240
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=53.42 E-value=33 Score=30.99 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 014660 299 LRKQAEAEELSRKVDS 314 (421)
Q Consensus 299 lRKqa~leeLE~rVe~ 314 (421)
++|++++.+|..+...
T Consensus 22 ~~K~~~LqeL~~Q~va 37 (155)
T 2aze_A 22 KQKQSQLQELILQQIA 37 (155)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777665544
No 241
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=53.41 E-value=15 Score=24.93 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 326 INQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 326 l~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+.+|..+..+.+.||-+|.+++..++
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44555555666667777777766554
No 242
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=52.94 E-value=20 Score=24.82 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
|..+++.|..+...|+.|...|+.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444444444444444445555544
No 243
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=52.87 E-value=1.4e+02 Score=31.44 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=40.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 274 WIQNERELKRERRKQSNRESAR--------------------------RSRLRKQAEAEELSRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 274 ~~qdErE~KR~RRk~sNRESAR--------------------------RSRlRKqa~leeLE~rVe~L~~EN~~L~~el~ 327 (421)
-+.-|+..+....+++|+..-- ..-.+=.++.++||.+...|+.....-...|.
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~Ir 135 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIK 135 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777765321 01111124555666666666554444335555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014660 328 QLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 328 ~L~e~~~~L~~EN~~LkekL~ 348 (421)
.|+..++.++.+.+.|..-|.
T Consensus 136 vLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 136 ALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 244
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=52.69 E-value=48 Score=27.62 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014660 328 QLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 328 ~L~e~~~~L~~EN~~LkekL~ 348 (421)
.|++++.+|..|...|+..|.
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~ 73 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQ 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544
No 245
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=52.50 E-value=76 Score=25.70 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQL 329 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L 329 (421)
.|..+++++..+...|++++..|
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L 60 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDL 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 246
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=52.48 E-value=16 Score=31.53 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
..|..++..|.+++..|+.|+..|+.++...+
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888888888887776543
No 247
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=52.24 E-value=32 Score=25.84 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.+++..+..|+.+...++.++.....++..|..=.-.|-.+|..
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIat 46 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIAT 46 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34555566666666666666666655665555444445444443
No 248
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=52.15 E-value=97 Score=25.38 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Q 014660 333 SEKLRQENAALLEKLKSAQLGNKQE 357 (421)
Q Consensus 333 ~~~L~~EN~~LkekL~~lql~~~~E 357 (421)
|..++-=-+.|-.+|.+.+-....+
T Consensus 50 YNeiKD~gq~L~g~iA~~rgv~~~~ 74 (85)
T 3viq_B 50 YNEIRDIALGMIGKVAEHEKCTSVE 74 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HhHHHHHHHHHHHHHHHHcCCcHHH
Confidence 3444444445555555555443333
No 249
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=52.14 E-value=72 Score=30.17 Aligned_cols=20 Identities=0% Similarity=-0.014 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014660 329 LSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 329 L~e~~~~L~~EN~~LkekL~ 348 (421)
++.++..++.+...++.+|.
T Consensus 127 a~a~~~~~~~~l~~~~~~l~ 146 (369)
T 4dk0_A 127 AKAEMDVVQENIKQAEIEVN 146 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334443333
No 250
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=52.02 E-value=7.7 Score=33.31 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 326 INQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 326 l~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+++|..++.+|+.||..||.+|+.
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777788888899999999975
No 251
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=51.33 E-value=79 Score=28.22 Aligned_cols=42 Identities=31% Similarity=0.372 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 311 KVDSLIDENASLKSEIN-------QLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~-------~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
-|+.|+.-..-|+++++ .....+++|..||..++++|.+.+.
T Consensus 113 MVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 113 MVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 45566666666666654 3345578899999999999998763
No 252
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=51.29 E-value=30 Score=24.04 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+|..+++.|-.+...|+.|...||.-|
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 253
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=51.28 E-value=34 Score=30.08 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+|+..+.+|......|..+-=.|..+...-.-|...|+.++.+++
T Consensus 62 ~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 62 ELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 344444444444444444444444444455557777777777664
No 254
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.21 E-value=58 Score=41.34 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=6.7
Q ss_pred CcccccCCCCCCC
Q 014660 139 GLAMSIGNASAES 151 (421)
Q Consensus 139 Gl~m~~g~~~~~~ 151 (421)
|.+|.+|-|-+|+
T Consensus 1647 GhaLLVGvgGSGk 1659 (3245)
T 3vkg_A 1647 GHALLIGVSGGGK 1659 (3245)
T ss_dssp CCEEEEESTTSSH
T ss_pred CCeEEecCCCCcH
Confidence 4455555554444
No 255
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=51.12 E-value=37 Score=27.13 Aligned_cols=34 Identities=9% Similarity=0.208 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 315 LIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 315 L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
|+.....|..++..|..++..++.+...|+.+|.
T Consensus 70 L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444443
No 256
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=50.72 E-value=48 Score=27.12 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
++-+.|..+++.|+.|+..|++++..|++
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666654
No 257
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=50.56 E-value=32 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
+.+++.+...|+..|..|..++.+|+.
T Consensus 51 ~~e~e~r~k~le~~n~~l~~riqELE~ 77 (83)
T 4ath_A 51 AKDLENRQKKLEHANRHLLLRVQELEM 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 344445555555555555555544443
No 258
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.10 E-value=38 Score=27.45 Aligned_cols=34 Identities=12% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 318 ENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+...++.++..|+.....++.+...|+..|..+.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555555555555566666666666553
No 259
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=49.93 E-value=28 Score=28.41 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
-+|+..|++++. .|+++. .+...|+..|..|.-+|++++
T Consensus 38 vdYI~~Lq~e~~-------r~~e~e----~r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 38 VDYIRKLQREQQ-------RAKDLE----NRQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHTHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHH----HHHHHhhhhhHHHHHHHHHHH
Confidence 355555555444 333332 333457778888888888765
No 260
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=49.85 E-value=97 Score=24.70 Aligned_cols=44 Identities=27% Similarity=0.405 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
||+++++|-.-|. .||.++....+-..+|+.++.-++..+..+.
T Consensus 15 Kq~EI~rLnvlvg-------slR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 15 KQNEIFELKKIAE-------TLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 5555555554444 5666677777777777777777777776654
No 261
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=49.61 E-value=42 Score=27.48 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
-+.|..+++.++.|...|++++..|+
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444
No 262
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=48.97 E-value=10 Score=40.00 Aligned_cols=29 Identities=7% Similarity=0.207 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
+..+|+.++.+++.+......+|.+.++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDM 364 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 35667777777777776666665544443
No 263
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=48.93 E-value=32 Score=32.45 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLI---DENASLKSEINQLSENSE 334 (421)
Q Consensus 305 leeLE~rVe~L~---~EN~~L~~el~~L~e~~~ 334 (421)
+.+||.++..|- .+|..+-.++.+|.-++.
T Consensus 81 ~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 81 NIEMRHRLSQLMDVARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555554443 467777777766665544
No 264
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=48.45 E-value=74 Score=24.30 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
=.|..+|..|++||..|.+.++.-+..-..|+
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE 44 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQRARKDLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777776665554444444
No 265
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=48.40 E-value=34 Score=29.55 Aligned_cols=40 Identities=5% Similarity=0.157 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
+.|+.|++.|+.....|...+..+++++..++...+.|..
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555544444444443
No 266
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=47.80 E-value=1.1e+02 Score=25.27 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 322 LKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+..+|..+..+++.|+.+...|...|.+++
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666677777777777777766653
No 267
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=47.78 E-value=32 Score=34.75 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
|..++..|++++..|+.+...|.++|..
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554
No 268
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.74 E-value=37 Score=23.45 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+|..+++.|..+...|+.|...|+.-|
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 455555556555555666666666544
No 269
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=47.46 E-value=30 Score=33.10 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.|-.+|++++.....|..++..+.+..+..+.....|.+.|.+
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~d 45 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQE 45 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444443
No 270
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=47.29 E-value=10 Score=28.42 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLK 323 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~ 323 (421)
..++++||.+|+.|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888777665543
No 271
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=47.27 E-value=68 Score=29.85 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
|+.++..|+.+|..|..++++|..++
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~ql 162 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRF 162 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 272
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=47.25 E-value=1.3e+02 Score=25.34 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|+..=+++.++..---+-|..|+.-...-+..-..-..++.+|+.|...|+++|+++.
T Consensus 30 Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 30 TQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444432222222222234567888889999999988765
No 273
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=46.83 E-value=95 Score=23.73 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
...+++.|+..-..-..++...+.++..|+...+.|..+|..+
T Consensus 33 y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 33 YKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466777777776666777777777777777777777777654
No 274
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=46.73 E-value=30 Score=24.03 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKLRQENAALLEK 346 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~Lkek 346 (421)
|..+++.|-.+...|+.|...||.-
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444555555543
No 275
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.62 E-value=1.2e+02 Score=31.13 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=11.8
Q ss_pred hhhhHHHHHHHHHHHhHHH
Q 014660 275 IQNERELKRERRKQSNRES 293 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRES 293 (421)
++.|++.+....+++|+..
T Consensus 59 dk~er~~~~rIe~L~~~L~ 77 (390)
T 1deq_A 59 DEVDQDFTSRINKLRDSLF 77 (390)
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 3455666766677776553
No 276
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=46.59 E-value=25 Score=23.51 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 327 NQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 327 ~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
+.|..+|..|++..+.|..+|..++.
T Consensus 4 ealekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666777777777777777766553
No 277
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=46.55 E-value=37 Score=23.56 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+|..+++.|-.+...|+.|...|++-|.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4555555555555566666666666553
No 278
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.53 E-value=47 Score=33.95 Aligned_cols=41 Identities=15% Similarity=0.010 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
+..||..+...+.+...|+..+..++.++..|+.+..+|..
T Consensus 93 ~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 93 IIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444433
No 279
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.22 E-value=23 Score=26.33 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
+-..||.-|..|+..|..|.+.|..|...+..|+.
T Consensus 18 enaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 34556677777777887777777777776665554
No 280
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=46.08 E-value=12 Score=31.38 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 327 NQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 327 ~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+|+.++..|+.|...|+++|+.++
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555566666666654
No 281
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.56 E-value=49 Score=33.86 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 014660 336 LRQENAALLEKLKS 349 (421)
Q Consensus 336 L~~EN~~LkekL~~ 349 (421)
|..|-..|+++|+.
T Consensus 74 l~~~~~~~~~~~~~ 87 (455)
T 2dq0_A 74 LLAKSREIVKRIGE 87 (455)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 282
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=45.25 E-value=29 Score=24.10 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
+|..+++.|-.+...|+.|...||.-|
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 344444444444445555555555433
No 283
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=45.06 E-value=50 Score=30.42 Aligned_cols=44 Identities=18% Similarity=0.122 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|+..+.+|......|..+-=.|...+..-.-|...|+.++.+++
T Consensus 63 L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 33333333333333333333344444444456666777766654
No 284
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=44.82 E-value=77 Score=23.42 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~ 327 (421)
|+.|..|+.+...|..++.
T Consensus 11 ERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333333
No 285
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=44.12 E-value=4.7 Score=31.87 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENA---------------------SLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 305 leeLE~rVe~L~~EN~---------------------~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+..||.++.+|+.|.+ .|++++.+|+=++..|...|.+|+.+|+
T Consensus 15 lqalekelaqlekelqawncicdiencsnmaplysdqalkkklaqlkwklqalkkknaqlkkklq 79 (80)
T 2lq4_p 15 LQALEKELAQLEKELQAWNCICDIENCSNMAPLYSDQALKKKLAQLKWKLQALKKKNAQLKKKLQ 79 (80)
T ss_dssp THHHHTTHHHHHHHHTTTCSSCCCCCCCSSCCCCCSTTTHHHHHTTHHHHHHHTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 4567777777777653 4778888888888888888888888875
No 286
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=44.03 E-value=76 Score=31.80 Aligned_cols=45 Identities=11% Similarity=0.316 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++.|..+++.|...-..|..++..-...+..|+.+...||-.|..
T Consensus 207 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~q 251 (373)
T 3hhm_B 207 YDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQ 251 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 345555555555555555555555555555555565655555543
No 287
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=43.92 E-value=46 Score=24.13 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014660 314 SLIDENASLKSEINQLSE 331 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e 331 (421)
.|+.|.+.|.+++..|+.
T Consensus 24 aleselqalekklaalks 41 (48)
T 1g6u_A 24 ALESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 288
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=43.60 E-value=1.1e+02 Score=23.70 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 313 DSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 313 e~L~~EN~~L~~el~~L~e~~~~L 336 (421)
..|..|...|.++|..|+.++..|
T Consensus 37 ~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 37 SSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhhhhhh
Confidence 344444444444444444444444
No 289
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=43.18 E-value=32 Score=30.59 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
.+++..|+.||.....++....++.+.|..+.+.+
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655555444444433333
No 290
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=42.90 E-value=50 Score=23.92 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 323 KSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 323 ~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+++.++-.++.+.+.+...|+.++..+
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 291
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=42.88 E-value=50 Score=22.94 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+|..+++.|-.+...|+.|...|++-|.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4555666666666666667777766554
No 292
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=42.55 E-value=1.5e+02 Score=24.87 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 315 LIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 315 L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
++.+...|++.+..+.-....|+.+...|+++|.-
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445544443333333444555555555443
No 293
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=42.51 E-value=45 Score=28.65 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
.++.+|+.+++.++..|++|++-...-.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks 31 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKI 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666665555444433
No 294
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.50 E-value=40 Score=29.13 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
.+++..|+.||.....++....++.+.|
T Consensus 91 ~~ri~~L~~E~~~~~~el~~~v~e~e~l 118 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444433333
No 295
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=42.34 E-value=31 Score=24.95 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~ 330 (421)
|..+-+.|++....|..++..|.
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 296
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=42.25 E-value=1.3e+02 Score=30.91 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ccccccCCCCcchhhhhh
Q 014660 316 IDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEI-VLNEDKRVTPVSTENLLS 376 (421)
Q Consensus 316 ~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~-~~~~~~~~~p~~~e~lls 376 (421)
+.-+......|..|+..+.........|++.+..+.....+.- .........|+.+.+++.
T Consensus 97 ~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~~~~~~~~~~~~~~~dC~~i~~ 158 (411)
T 3ghg_C 97 EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGKDCQDIAN 158 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCEESCCCCSCCBSSHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCcCCCCCHHHHHh
Confidence 3333333444455555555555556666666665543322110 011122345556666654
No 297
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=41.84 E-value=1.4e+02 Score=27.86 Aligned_cols=16 Identities=6% Similarity=-0.045 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 014660 333 SEKLRQENAALLEKLK 348 (421)
Q Consensus 333 ~~~L~~EN~~LkekL~ 348 (421)
+..++.+...++.+|.
T Consensus 130 l~~~~a~l~~a~a~l~ 145 (341)
T 3fpp_A 130 IGTIDAQIKRNQASLD 145 (341)
T ss_dssp HHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444433
No 298
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.80 E-value=52 Score=23.85 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
++|-++++...+|...-+++|..|+.+...|+..
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777888888888888888888777776643
No 299
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=41.78 E-value=96 Score=25.38 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 300 RKQAEAEELSRKVDSLIDENASLKSEIN--------QLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L~~el~--------~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
.|++.|.+++..+++.+.-...|.-|+. .+..++..-+.+...|+.+++.++.
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666666665555555555543 4455666666777777777776653
No 300
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=41.57 E-value=21 Score=27.89 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014660 325 EINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 325 el~~L~e~~~~L~~EN~~Lke 345 (421)
-|..|+++...|..++..|+.
T Consensus 58 YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 58 YIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 355566655555556665554
No 301
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=41.37 E-value=46 Score=27.02 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+++.+|...|+.|++|..-.-.+|+.+.--|.....++..|..+|..
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ 54 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIG 54 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 34566666666666666666666666655555544444444444443
No 302
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=41.29 E-value=71 Score=33.30 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSEN---SEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~---~~~L~~EN~~LkekL~~l 350 (421)
.+|..+++.|+++-..+.++|..++.. ...|..|...|+++|+.+
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~l 90 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEI 90 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555443221 233444455555555443
No 303
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=40.76 E-value=1.1e+02 Score=22.82 Aligned_cols=47 Identities=30% Similarity=0.226 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+..+..|+.++..++.+-.....+...|-.--..|..|...-|.-|.
T Consensus 6 q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLE 52 (59)
T 1gk6_A 6 EDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 55677888888888888888888888887777788888888776654
No 304
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=40.74 E-value=1.5e+02 Score=24.28 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
+++.+...+..|+.+...++.++.....+|..|..=.-.|-.+|...
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatY 84 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAY 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666555655555445555555443
No 305
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=40.73 E-value=48 Score=30.77 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e 331 (421)
.++..|+++|..|.+|..+|.+
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 306
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.70 E-value=29 Score=35.26 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+.+++++.++..+.+....|..+. ..|..+...|++++..++
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~~~~-------~~l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLEAQR-------NALNDKVRFIKDELRLLQ 66 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 344555555555444444444333 344445555666666554
No 307
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=40.57 E-value=29 Score=33.10 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=37.7
Q ss_pred CchhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 271 PETWIQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKS 324 (421)
Q Consensus 271 ~e~~~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~ 324 (421)
.+.+...-+++.+.+.++.-+..+.-+..-|++++.+|+.++..|++....|..
T Consensus 259 ~~~dy~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (321)
T 3p7i_A 259 SDLQLVPIRQLALFKEMQSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALSA 312 (321)
T ss_dssp CGGGGHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777777666666666667777888888888888887766655543
No 308
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=40.51 E-value=45 Score=31.62 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 314 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
..+.+...++.++..++.++..++.+...++.+|...
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~ 155 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYT 155 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344455555666666666666666777776666543
No 309
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=40.46 E-value=24 Score=29.49 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQLGNKQEIV 359 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~ 359 (421)
..+|+.+...|++++..+ +.|+..|++. =+.++...|++
T Consensus 9 ~~~l~~~~~~l~~~i~~l-------keel~~L~~~--P~~Vg~v~e~~ 47 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHL-------ENEVARLRSP--PLLVGVVSDIL 47 (109)
T ss_dssp CHHHHHHHHHHHHHHHHH-------HHHHHHHHSC--CEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHhCC--CceEEEEEEEe
Confidence 344444444444444444 4455555542 14455555543
No 310
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=40.41 E-value=56 Score=31.35 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQE 339 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~E 339 (421)
++++..++.|..+...|.+++..|+++..+|+.+
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444444444444444444333333
No 311
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=40.31 E-value=64 Score=21.87 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
.||+.+..|..-.++|.+++.+|.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555543
No 312
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.20 E-value=1.6e+02 Score=30.67 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 326 INQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 326 l~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
...|++++..|+.+...|.++|..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555443
No 313
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=40.04 E-value=23 Score=35.09 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
++.+|+.....+..+|..|+..+..++.+...|+++|..++
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666665554
No 314
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=39.97 E-value=1.3e+02 Score=28.36 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
++-+.|..+++.|+.|+..|++++..|++
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666665554
No 315
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=39.93 E-value=74 Score=29.19 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=5.9
Q ss_pred hhhhhhhhcC
Q 014660 402 GAKLHQLLDA 411 (421)
Q Consensus 402 ~~kl~qll~~ 411 (421)
.+.|||-+..
T Consensus 150 DP~~HeAv~~ 159 (197)
T 1dkg_A 150 DPNVHQAIAM 159 (197)
T ss_dssp CTTSEEEEEE
T ss_pred CHHHhheeee
Confidence 3566776643
No 316
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=39.32 E-value=93 Score=25.92 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLE 345 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lke 345 (421)
++.|+.|++.|+.....|...+..+++++..+..+.+++..
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777777777777777766666666655555443
No 317
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.16 E-value=1.8e+02 Score=24.77 Aligned_cols=7 Identities=14% Similarity=0.264 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 014660 278 ERELKRE 284 (421)
Q Consensus 278 ErE~KR~ 284 (421)
+.++.+.
T Consensus 43 ~~dl~~l 49 (142)
T 3gp4_A 43 AEDLRWI 49 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 318
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=39.15 E-value=1e+02 Score=22.79 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 311 KVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
+.+.-++....|.++|.+|..++..-..++..+.++|.
T Consensus 6 ~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 6 KNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 319
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.06 E-value=30 Score=35.34 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 326 INQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 326 l~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+..+++++..|+.+...++++|+.++
T Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 74 LKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333334444444445555555554
No 320
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=38.77 E-value=1e+02 Score=26.99 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
++.|.+|-.++..|+.|.-.|..++..-.-++..|......|+.+.
T Consensus 64 ~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKf 109 (133)
T 1j1d_C 64 QDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHccc
Confidence 3455556666666666655565555555555555555555555444
No 321
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.75 E-value=1.5e+02 Score=23.64 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
...++.+...+..|+.+...++.++.....+|..|..=.-.|-.+|..
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIat 74 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345566666677777777777777766666666555555555555544
No 322
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=38.72 E-value=1.7e+02 Score=24.41 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 310 RKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+++.|+.+...=..+|..|++.+..+..++..|..++..++
T Consensus 54 ~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 54 EVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555566666667777777777776543
No 323
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=38.59 E-value=60 Score=32.04 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=4.5
Q ss_pred hhhhhhhc
Q 014660 403 AKLHQLLD 410 (421)
Q Consensus 403 ~kl~qll~ 410 (421)
.|||+|-.
T Consensus 161 e~ih~LT~ 168 (323)
T 1lwu_B 161 KTVHQLTK 168 (323)
T ss_dssp HHHHHHHH
T ss_pred cceeeecC
Confidence 45666653
No 324
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=38.55 E-value=1.4e+02 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
+.++.|+.-++.|+..-..|..++...+
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777766666666665444
No 325
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.45 E-value=40 Score=26.33 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 298 RlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
|.+=...+++|..-|-.+...-..=..-|....+-+..|..++..|++++..++
T Consensus 24 R~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 24 RDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345556666555544211000111122223334566777777777776654
No 326
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.42 E-value=1.8e+02 Score=24.57 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
+..++..|+.+...++.++.+...+|..|
T Consensus 82 ~q~~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 82 IQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443434333
No 327
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=38.24 E-value=75 Score=31.42 Aligned_cols=49 Identities=18% Similarity=0.227 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEIN------QLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~------~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+|++.|++++++|+.+...|..+++ ..+.++..+..+...+..+|.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777666654432 22344455555555555555554
No 328
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=38.22 E-value=1.5e+02 Score=23.46 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
-...+..++..+..|+.+...++.++.....+|..|..=.-.|-.+|...
T Consensus 24 ~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatY 73 (84)
T 1gk4_A 24 FAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATY 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34456667777777777777777777777777766665555555555543
No 329
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=37.77 E-value=66 Score=30.13 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
++|+.+++.|+.+...|..++..++
T Consensus 69 ~~l~~e~~el~d~~lR~~AEfeN~R 93 (213)
T 4ani_A 69 AELEAKLSEMEHRYLRLYADFENFR 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333333333333
No 330
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=37.74 E-value=2.7e+02 Score=26.93 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Q 014660 293 SARRSRLRKQAEAEELSRKV----------------DSLI---DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ-- 351 (421)
Q Consensus 293 SARRSRlRKqa~leeLE~rV----------------e~L~---~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq-- 351 (421)
++++++.+=-..+++++.-. ..|+ +.-..|+.++......|.....+-..+|.+|...+
T Consensus 134 ~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~ 213 (279)
T 3qwe_A 134 ALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQR 213 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45677777777777776210 1122 22234666777777777777777777777776543
Q ss_pred -ccccccccc
Q 014660 352 -LGNKQEIVL 360 (421)
Q Consensus 352 -l~~~~E~~~ 360 (421)
+.+.+++|+
T Consensus 214 ~v~~Lr~LI~ 223 (279)
T 3qwe_A 214 IVSHVRKLVF 223 (279)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 444445544
No 331
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.62 E-value=1e+02 Score=29.45 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
+.+|+.+++.|+.+...+..++..+.++
T Consensus 228 l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 228 AARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 332
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.42 E-value=41 Score=29.72 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
..|...+..+..+...|..++..-+......+.++..|..+|.++
T Consensus 35 ~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 35 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444444444444443
No 333
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=37.36 E-value=1.4e+02 Score=25.26 Aligned_cols=31 Identities=13% Similarity=0.423 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
..+++.+++.+++.|-..|-.|..|+.+|+.
T Consensus 74 NhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 74 NHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456777778888888888888888877765
No 334
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=37.32 E-value=51 Score=29.21 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
+..||+++..|+.....+..+|..|++++..|+.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456777777776666666666666666666654
No 335
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=37.02 E-value=1.7e+02 Score=26.13 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
..|+..+...+.....++.+.+.|+.++.
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~ 97 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKE 97 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 34444444444444444444444444433
No 336
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=36.33 E-value=1.6e+02 Score=25.01 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 014660 336 LRQENAALLEKLKS 349 (421)
Q Consensus 336 L~~EN~~LkekL~~ 349 (421)
|+....+||.+|.+
T Consensus 87 lq~KiaeLKrqLAd 100 (107)
T 2k48_A 87 LETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 337
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=36.17 E-value=1.7e+02 Score=24.77 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
+++.++..++..|+++...|+..+..|.++
T Consensus 11 ~eL~~~~~ei~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555544443
No 338
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=36.05 E-value=1.2e+02 Score=27.64 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.|+..+.....+|..|..++..|+-++..|...-......|..
T Consensus 114 ~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~ 156 (170)
T 3l4q_C 114 KLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQ 156 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555554444444443
No 339
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=36.04 E-value=88 Score=28.21 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALL 344 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~Lk 344 (421)
++.|+.|...++.+|.+-++++.+|..+...|+
T Consensus 7 ~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 7 CQNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333
No 340
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.83 E-value=2e+02 Score=24.23 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 014660 280 ELKRERRKQ 288 (421)
Q Consensus 280 E~KR~RRk~ 288 (421)
|....||.+
T Consensus 37 Ei~elrr~i 45 (129)
T 3tnu_B 37 EISEMNRMI 45 (129)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 341
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.67 E-value=36 Score=34.70 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 317 DENASLKSEINQLSENSEKLRQENAALL 344 (421)
Q Consensus 317 ~EN~~L~~el~~L~e~~~~L~~EN~~Lk 344 (421)
.+...++.++..|++++..++.|...|+
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 99 (437)
T 4b4t_L 72 DQLKQRRQNIRDLEKLYDKTENDIKALQ 99 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444445555555555555654444
No 342
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=35.60 E-value=97 Score=30.20 Aligned_cols=55 Identities=11% Similarity=0.223 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.......-..++.+|..++..++.+-..+.+.++++.+.+..|+.|.+++|.-|+
T Consensus 207 ~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 207 VEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455566778888888888888888888888888888888888888776554
No 343
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=35.40 E-value=1.1e+02 Score=22.77 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el 326 (421)
.||.+.+++| ..|+.+...|+.++
T Consensus 6 rrr~e~ld~l----~~LEkqF~~LkEql 29 (49)
T 2xus_A 6 RRRSECVSEM----LDLEKQFSELKEKL 29 (49)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3445555544 34555555555543
No 344
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=34.96 E-value=16 Score=26.79 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 325 EINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 325 el~~L~e~~~~L~~EN~~LkekL 347 (421)
+|..+.+..+.++.++..||.++
T Consensus 7 ELeEa~Erae~ae~~vnkLR~k~ 29 (45)
T 3zwh_Q 7 ELEDATETADAMNREVSSLKNKL 29 (45)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444555444
No 345
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=34.69 E-value=1.4e+02 Score=27.71 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 298 RLRKQAEAEELSRKVDSLI-------DENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 298 RlRKqa~leeLE~rVe~L~-------~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
|.+|+--.+....+++.|. ........++...++.++.| |..|+++|-.+
T Consensus 139 R~~KllDYD~~~~k~~kL~~K~~kd~~kl~kae~el~~Ak~~Ye~l---N~~L~eELP~l 195 (243)
T 4a3a_A 139 RSRKLVDYDSARHHLEALQSSKRKDESRISKAEEEFQKAQKVFEEF---NVDLQEELPSL 195 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 346
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=34.51 E-value=94 Score=21.34 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.|++++..|++++.-|--....|++++..
T Consensus 5 alkekvsalkeqflmlmfkvsalkekvsa 33 (36)
T 3tq2_A 5 ALKEKVSALKEQFLMLMFKVSALKEKVSA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555556665544
No 347
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=33.82 E-value=1.8e+02 Score=23.49 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHh
Q 014660 328 QLSENSEKLRQENAA-LLEKLKSA 350 (421)
Q Consensus 328 ~L~e~~~~L~~EN~~-LkekL~~l 350 (421)
.+..++..-+.+... |+.+|+.+
T Consensus 69 ~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 69 TYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555556666 66666554
No 348
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.82 E-value=20 Score=23.44 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 014660 313 DSLIDENASLKSEIN 327 (421)
Q Consensus 313 e~L~~EN~~L~~el~ 327 (421)
+.|++....|++++.
T Consensus 10 daleqkiaalkqkia 24 (28)
T 3ra3_A 10 DALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 349
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=33.73 E-value=1.5e+02 Score=22.12 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014660 315 LIDENASLKSEINQLSENS 333 (421)
Q Consensus 315 L~~EN~~L~~el~~L~e~~ 333 (421)
|..+...+..+++.+.+++
T Consensus 24 l~~~v~~~~~~le~~~~q~ 42 (66)
T 3m0a_A 24 LNREVERVAMTAEACSRQH 42 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhhh
Confidence 3333344444444443333
No 350
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=33.69 E-value=70 Score=25.63 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 320 ASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 320 ~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
..|+..+..|++++..-+.|.+.|++.+
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i 41 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVI 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544
No 351
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.23 E-value=1.8e+02 Score=26.44 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
.++-+.|...-..|...+..|.++...|+.+...|++++
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~ 86 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANR 86 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555555555555555555555555533
No 352
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=33.11 E-value=83 Score=30.62 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
.++++.|+.+.+.|+.|..+|++++..+++.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3567777777777777777777766666553
No 353
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.95 E-value=1.9e+02 Score=23.15 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 318 ENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
-...|..++..+..++..|+.+...|..++.+++
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666777777777777777776654
No 354
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=32.94 E-value=2e+02 Score=23.76 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKL----RQENAALLEKLK 348 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L----~~EN~~LkekL~ 348 (421)
+.+.++..--+|-+.++..|-.|.....++ +.|...||.+|.
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555555554444333 456777777765
No 355
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.81 E-value=3e+02 Score=28.57 Aligned_cols=10 Identities=10% Similarity=0.202 Sum_probs=6.1
Q ss_pred CCcchhhhhh
Q 014660 367 TPVSTENLLS 376 (421)
Q Consensus 367 ~p~~~e~lls 376 (421)
.++++.+++.
T Consensus 212 ~~~dC~di~~ 221 (464)
T 1m1j_B 212 SGRECEDIYR 221 (464)
T ss_dssp CBSSHHHHHH
T ss_pred CCCCHHHHHh
Confidence 4556777664
No 356
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.68 E-value=1.9e+02 Score=23.16 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.|..++..|+.+...+..+...|+.++.
T Consensus 75 ~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 75 NSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 357
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=32.66 E-value=1.7e+02 Score=22.71 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
.|..+|..|+++|..|.+-++.-+.....|+.
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~ 42 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666655554444443
No 358
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.61 E-value=1.9e+02 Score=23.59 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKS 324 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~ 324 (421)
+..|+.+...|+++...|+.
T Consensus 10 i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 359
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=32.60 E-value=3e+02 Score=25.41 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014660 277 NERELKRERRKQSNRESARRSRLRKQAEA-EELSRKVDSLIDENASLKS---EINQLSENSEKLRQENAALLEKLKSAQL 352 (421)
Q Consensus 277 dErE~KR~RRk~sNRESARRSRlRKqa~l-eeLE~rVe~L~~EN~~L~~---el~~L~e~~~~L~~EN~~LkekL~~lql 352 (421)
++.-+-+.--++-|+.+.+.-|..|-.++ +....-.+.-+..+..|.. .+......+..|+....++.++|..++.
T Consensus 66 G~~SlTqL~nrL~~wlsQ~em~~qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~aq~kLs~L~P 145 (201)
T 3u0c_A 66 GEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDP 145 (201)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334455555566666666666666655 1122222222222233333 3344566777777778888888877654
Q ss_pred c
Q 014660 353 G 353 (421)
Q Consensus 353 ~ 353 (421)
+
T Consensus 146 ~ 146 (201)
T 3u0c_A 146 E 146 (201)
T ss_dssp S
T ss_pred C
Confidence 3
No 360
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.25 E-value=65 Score=32.69 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~L~e 331 (421)
+.+..|+.+...|..++..+++
T Consensus 39 ~~~~~l~~~~~~l~~~~~~~~~ 60 (405)
T 4b4t_J 39 ENVRRLEAQRNALNDKVRFIKD 60 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556555555554
No 361
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=32.20 E-value=96 Score=33.05 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++..+..|..+...++.++..++.++.+|+..-..++++|...
T Consensus 350 i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~ 392 (695)
T 2j69_A 350 VARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINT 392 (695)
T ss_dssp HHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666666666655555555555555543
No 362
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=32.00 E-value=57 Score=23.56 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 014660 317 DENASLKSEINQLSE 331 (421)
Q Consensus 317 ~EN~~L~~el~~L~e 331 (421)
.....|.++|..|..
T Consensus 16 ~r~e~LE~Ri~~LE~ 30 (43)
T 2pnv_A 16 ERSEDFEKRIVTLET 30 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 333334444433333
No 363
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=31.81 E-value=1.3e+02 Score=22.09 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
+++...|.+||.+|+.-.....+++..+..++..++
T Consensus 6 ~eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~E 41 (45)
T 4gif_A 6 GEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLE 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777766666666666665554443
No 364
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=31.77 E-value=18 Score=26.94 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 317 DENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 317 ~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.||..|..-+.+|......|+.....|...|.+++
T Consensus 17 kenaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 17 KENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 47777777777777777777777777776666654
No 365
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=31.51 E-value=2.3e+02 Score=23.64 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
+.+.-|+.+|+..+..-..=|.--+++.++...|..++..|+.++..+.
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888877776666666666666777777777777777665544
No 366
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.45 E-value=54 Score=33.64 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.+++..|+.-+...+.....|+..+.....++..|+.....|..+..
T Consensus 90 l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 90 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444445555555555556666666666666666666666665543
No 367
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=31.44 E-value=1.4e+02 Score=31.54 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
+.+++.+-+.+++||..++++.+..+..+
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Y 64 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADY 64 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555544443
No 368
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=31.35 E-value=2.8e+02 Score=24.63 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSE------------INQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 290 NRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~e------------l~~L~e~~~~L~~EN~~LkekL~ 348 (421)
||-.--.++.+=-...+.|-.+|+.|+--...||.. +..+...+..+..+...|++-|.
T Consensus 8 ~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~ 78 (141)
T 3okq_A 8 NRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFID 78 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666777777666666666653 34445555555555555444443
No 369
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=30.87 E-value=50 Score=27.58 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 327 NQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 327 ~~L~e~~~~L~~EN~~LkekL~ 348 (421)
..|+.++.+|..|...|+..|.
T Consensus 59 AKL~Rk~DKl~~ele~l~~~L~ 80 (94)
T 3vlc_E 59 TKNNRKLDSLDKEINNLKDEIQ 80 (94)
T ss_dssp HHHHHHHHHHHHHTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554
No 370
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=30.70 E-value=3.5e+02 Score=25.55 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e 331 (421)
.+..+.+.+....++..+|...-.+...+++++..+++
T Consensus 342 ~~~a~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~ 379 (446)
T 3pik_A 342 QQQSVVNYEQKIQNAFKEVADALALRQSLNDQISAQQR 379 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555554433
No 371
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.64 E-value=69 Score=25.14 Aligned_cols=10 Identities=40% Similarity=0.358 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 014660 339 ENAALLEKLK 348 (421)
Q Consensus 339 EN~~LkekL~ 348 (421)
|++.|+.+|.
T Consensus 40 eI~eLr~~Ld 49 (67)
T 1zxa_A 40 EIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 372
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=30.61 E-value=90 Score=27.20 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014660 312 VDSLIDENASLKSEINQLS 330 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~ 330 (421)
+.+++.|...|..+|++|+
T Consensus 38 i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 38 YAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 373
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=30.50 E-value=29 Score=29.38 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 014660 302 QAEAEELSRKVDSLIDE---NASLKSEINQLSENSEKL 336 (421)
Q Consensus 302 qa~leeLE~rVe~L~~E---N~~L~~el~~L~e~~~~L 336 (421)
-+|+..|+.++..|+.+ +..|......|..++.+|
T Consensus 73 ieYIk~Lq~~~~~l~~~~~~~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 73 VDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666543 233333344444433333
No 374
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=30.43 E-value=1.3e+02 Score=27.43 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 309 SRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 309 E~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
..-...|+.+...|.++...|..++..|..
T Consensus 55 ~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 55 AIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443
No 375
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=29.79 E-value=6.9 Score=33.32 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.|..++..|..+.+.|..||..|+.++..
T Consensus 62 ~LE~e~~~L~~e~e~L~~En~~l~~E~~~ 90 (107)
T 3a5t_A 62 ELEKQKAELQQEVEKLASENASMKLELDA 90 (107)
T ss_dssp HHHHHHTTTSSTTTTTTSTTSHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555544443
No 376
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=29.75 E-value=1.7e+02 Score=22.37 Aligned_cols=47 Identities=28% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHh
Q 014660 304 EAEELSRKVDSLIDE---------NASLKSEINQLSENSEKL---------RQENAALLEKLKSA 350 (421)
Q Consensus 304 ~leeLE~rVe~L~~E---------N~~L~~el~~L~e~~~~L---------~~EN~~LkekL~~l 350 (421)
++..|+.+|..|+.. ..+|+.+-..|..+++.| +.|...|.++|+.+
T Consensus 3 rvkaleekvkaleekvkalggggrieelkkkweelkkkieelggggevkkveeevkkleeeikkl 67 (67)
T 1lq7_A 3 RVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhcC
No 377
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=29.42 E-value=2.1e+02 Score=22.68 Aligned_cols=40 Identities=23% Similarity=0.159 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 295 RRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
|+|-+-=++.+++|..=-+.-+.|-.-|..++...++.+.
T Consensus 25 kqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~ 64 (70)
T 3brv_B 25 RQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444433333333333334444444433333
No 378
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=29.33 E-value=1.5e+02 Score=27.25 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 014660 333 SEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 333 ~~~L~~EN~~LkekL~~lq 351 (421)
+..-.-|...|+.++.+++
T Consensus 85 vkkq~yEI~dL~~rVnDLr 103 (182)
T 1ytz_I 85 LQKTNKELEDLSQKLFDLR 103 (182)
T ss_dssp HHHHHHHHHHHTTTTGGGT
T ss_pred HHhhhHHHHHHHHHHHHHH
Confidence 3333345555555554443
No 379
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=29.32 E-value=86 Score=34.66 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=18.8
Q ss_pred CChh-hhhhhcCCCCCCCCCCCCCCCCCCCCCCcccc
Q 014660 30 TDWA-AMQAYYGPRVAIPPYYNSPIASGHAPQPYMWG 65 (421)
Q Consensus 30 PDWs-~mQAYygp~~~~pp~f~s~vas~p~phPYMWG 65 (421)
.||. +=|-|.| +++|-||... ..+.|+|-
T Consensus 398 ~DW~ISRqr~WG--~pIP~w~~~~-----~~~i~v~~ 427 (862)
T 1gax_A 398 KDWNISRQLWWG--HQIPAWYCED-----CQAVNVPR 427 (862)
T ss_dssp CCCCCBCCCSSS--CCCCCEEETT-----TCCEECCC
T ss_pred cceeEecccCCC--cccCceecCC-----CCEEEEec
Confidence 6898 7799986 4666666421 12567775
No 380
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=29.05 E-value=12 Score=31.44 Aligned_cols=35 Identities=34% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 314 SLIDENASLKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
.+..|.-.|++++..|..++..+..||..||+--+
T Consensus 40 ~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~Lke~qK 74 (95)
T 3n7n_E 40 KVVDETLFLQRQIAQLNKQLQLSFQENEKLLSVQK 74 (95)
T ss_dssp -----------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777777776444
No 381
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=28.83 E-value=2.1e+02 Score=30.84 Aligned_cols=28 Identities=36% Similarity=0.345 Sum_probs=14.4
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 014660 292 ESARRSRLR---KQAEAEELSRKVDSLIDEN 319 (421)
Q Consensus 292 ESARRSRlR---Kqa~leeLE~rVe~L~~EN 319 (421)
+++.+.|.+ +-..+++|+.++.+|+.|.
T Consensus 387 ea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~ 417 (854)
T 1qvr_A 387 EAAARLRMALESAPEEIDALERKKLQLEIER 417 (854)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Confidence 344444443 3455666666665555443
No 382
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=28.82 E-value=86 Score=29.07 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el 326 (421)
--..+.+|+.+...|++||++|..+-
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556778888888888888887764
No 383
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=28.63 E-value=1.5e+02 Score=25.04 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 314 SLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
+|+.-..+|...|..|.++-=.|+.....-.-+|.+
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~e 81 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVT 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHH
Confidence 344444444444444444433333333333333333
No 384
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.55 E-value=2.3e+02 Score=24.39 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 014660 335 KLRQENAALLEKLKS 349 (421)
Q Consensus 335 ~L~~EN~~LkekL~~ 349 (421)
.|+.-..+|+.+|.+
T Consensus 73 ~lq~KiaeLKrqLAd 87 (113)
T 4fi5_A 73 SIQAKIDELKRQLAD 87 (113)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 385
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=28.42 E-value=2.7e+02 Score=23.45 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
++|...+.+|......|..+-=.|..+...-.-|...|+.++.++
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444444444444444555555667777776655
No 386
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=28.40 E-value=1.8e+02 Score=24.18 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+|+.+++.|+++...|.. ++.+...|+..-..|..+|.++
T Consensus 50 ~eL~~EI~~L~~eI~~LE~----iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEK----MQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHH
Confidence 4555555555555544332 2333334444444455555443
No 387
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=28.29 E-value=83 Score=29.43 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=33.1
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 275 IQNERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKS 324 (421)
Q Consensus 275 ~qdErE~KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~ 324 (421)
...-|++...+.++.-+.-+.-+..-|++++.+|++++..|++....|..
T Consensus 254 y~~ir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (310)
T 3n5l_A 254 LLPIRQLELFKQRTDVANNANLGAEEKAAKLKALDEELAKLEKRMAEREQ 303 (310)
T ss_dssp GHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666555555555557777888888888888877766554443
No 388
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=28.26 E-value=83 Score=26.49 Aligned_cols=12 Identities=50% Similarity=0.614 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 014660 319 NASLKSEINQLS 330 (421)
Q Consensus 319 N~~L~~el~~L~ 330 (421)
+..|+.++..|+
T Consensus 98 ~~~L~~~i~~Le 109 (117)
T 3kin_B 98 NKALKSVIQHLE 109 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 389
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=28.09 E-value=1.3e+02 Score=25.07 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
.|+.+++.|+.+-..|-+.+..+++.+..|
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333
No 390
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=28.00 E-value=96 Score=25.91 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014660 311 KVDSLIDENASLKSEINQLSE 331 (421)
Q Consensus 311 rVe~L~~EN~~L~~el~~L~e 331 (421)
++..|++|...|..+-+.|-+
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~ 27 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDH 27 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344443333333333333
No 391
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.97 E-value=1.4e+02 Score=25.50 Aligned_cols=32 Identities=13% Similarity=0.301 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
+.|+.+++.|+.....++.++..+...+.++.
T Consensus 108 ~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 108 KEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666655554
No 392
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=27.61 E-value=1.8e+02 Score=21.23 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~ 327 (421)
.++.|+.-++.|+..-..|..+..
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444
No 393
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=27.57 E-value=1.1e+02 Score=21.19 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014660 333 SEKLRQENAALLEKLKS 349 (421)
Q Consensus 333 ~~~L~~EN~~LkekL~~ 349 (421)
.+.|+..+..|+.+|..
T Consensus 16 kE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 16 EDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334455555555543
No 394
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=27.56 E-value=33 Score=25.96 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 300 RKQAEAEELSRKVDSLIDENASL 322 (421)
Q Consensus 300 RKqa~leeLE~rVe~L~~EN~~L 322 (421)
.+..+++.|+.+|..|+.....|
T Consensus 55 ~~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 55 LKDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 35567888888888877665544
No 395
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=27.53 E-value=3.7e+02 Score=25.39 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
.+++.....+..+......++...++++.
T Consensus 347 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~ 375 (446)
T 3pik_A 347 VNYEQKIQNAFKEVADALALRQSLNDQIS 375 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 396
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=27.35 E-value=1.8e+02 Score=29.38 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=22.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 014660 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLID------ENASLKSEINQL 329 (421)
Q Consensus 284 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~------EN~~L~~el~~L 329 (421)
.++..+.|....+.......+++.|+.++.++.. |-..|.+++..|
T Consensus 188 ~~~~~~~~~~l~~~~~~~~~~l~~l~~ql~ei~~~~l~~~E~e~L~~~~~~L 239 (517)
T 4ad8_A 188 WREAVSRLERLQASQRERARQIDLLAFQVQEISEVSPDPGEEEGLNTELSRL 239 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 3344444444333333344455666666665555 445555444444
No 397
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=27.05 E-value=2.7e+02 Score=23.32 Aligned_cols=13 Identities=15% Similarity=0.174 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 014660 337 RQENAALLEKLKS 349 (421)
Q Consensus 337 ~~EN~~LkekL~~ 349 (421)
+.-...|+.+|.+
T Consensus 58 q~Ki~elkr~lAd 70 (96)
T 2ic9_A 58 ETKLGELKRELAD 70 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 398
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.86 E-value=2.5e+02 Score=22.65 Aligned_cols=22 Identities=5% Similarity=0.123 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el 326 (421)
+++|+.++...+.+...-+++|
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKL 28 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKL 28 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333
No 399
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=26.78 E-value=26 Score=30.84 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDEN 319 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN 319 (421)
..|-.|++++..++.|.
T Consensus 30 ek~~~~e~~~~~~~~El 46 (130)
T 3cl3_D 30 GRARAASEQARQLESER 46 (130)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 33333444444333333
No 400
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=26.69 E-value=3e+02 Score=24.45 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 014660 331 ENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 331 e~~~~L~~EN~~LkekL~~lq 351 (421)
.+..++......|..+|..++
T Consensus 84 ~ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 84 GKRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444555556666666554
No 401
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=26.40 E-value=2.8e+02 Score=23.12 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 295 RRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSE 334 (421)
Q Consensus 295 RRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~ 334 (421)
+-||.-=-.+.++|+.-+..|+.+|..-...|..|+.++.
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akid 56 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433334466666777777777766666666665544
No 402
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=26.40 E-value=2.5e+02 Score=25.36 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 014660 314 SLIDENASLKSEINQL 329 (421)
Q Consensus 314 ~L~~EN~~L~~el~~L 329 (421)
.++.-|..|+.+|..|
T Consensus 194 ~ye~ln~~L~~eLp~l 209 (251)
T 2fic_A 194 VFEEMNVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444455555444
No 403
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=26.32 E-value=73 Score=26.26 Aligned_cols=20 Identities=5% Similarity=0.139 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKS 324 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~ 324 (421)
+..|+.++..|+.+...|..
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444444444444444443
No 404
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.22 E-value=1.9e+02 Score=22.87 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENAS------LKSEINQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~------L~~el~~L~e~~~~L~~EN~~LkekL~ 348 (421)
..|+.|+.++..|+.+... =-.++..|..++..+..+...+-++=.
T Consensus 29 ~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777666532 124455556666666666655555543
No 405
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=26.18 E-value=1.4e+02 Score=22.92 Aligned_cols=7 Identities=14% Similarity=0.174 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 014660 307 ELSRKVD 313 (421)
Q Consensus 307 eLE~rVe 313 (421)
.|...+.
T Consensus 33 ~L~~~~~ 39 (98)
T 3gwk_C 33 LLTQEQA 39 (98)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 406
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.92 E-value=1.2e+02 Score=27.78 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 294 ARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQ 328 (421)
Q Consensus 294 ARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~ 328 (421)
|-|+-.+.|++++.||.++...+.++..+..++.+
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666677777666666666666666543
No 407
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=25.36 E-value=1.6e+02 Score=24.43 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDE 318 (421)
Q Consensus 307 eLE~rVe~L~~E 318 (421)
.|+++++.|..+
T Consensus 115 ~l~~~~~~l~~~ 126 (139)
T 3eff_K 115 AYTRTTRALHER 126 (139)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444333333
No 408
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.17 E-value=2.5e+02 Score=22.08 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 318 ENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 318 EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
-...|..++..+..++..|+.+...|+.++.+++
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777654
No 409
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=25.08 E-value=98 Score=21.44 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014660 310 RKVDSLIDENASLKSEINQ 328 (421)
Q Consensus 310 ~rVe~L~~EN~~L~~el~~ 328 (421)
...+.|+..+..|+.+|+.
T Consensus 14 ~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 14 SEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444443
No 410
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.05 E-value=56 Score=33.29 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQENAAL 343 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~L 343 (421)
|+.++..|+.|+..|..++..+++++..++.+...+
T Consensus 37 le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~ 72 (434)
T 4b4t_M 37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNN 72 (434)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555555555555555555555554444433
No 411
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=24.97 E-value=2.6e+02 Score=22.23 Aligned_cols=46 Identities=24% Similarity=0.155 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+|..++..-+.|..+|..-+..|+.++.+-..=|..|..++..+|
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q 51 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQ 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777777777777777777777777777666777776665554
No 412
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=24.73 E-value=80 Score=28.83 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
|+..+..|......++.+|..|.+++..|+.
T Consensus 41 ~~~h~~~~~~~i~~~~~~i~~~~~~l~~l~~ 71 (228)
T 1flk_A 41 LESQLSRHDQMLSVHDIRLADMDLRFQVLET 71 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566666665555666666666655555544
No 413
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=24.69 E-value=16 Score=36.17 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSEN 332 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~ 332 (421)
.+++.+|+.+..+...|..+|.+|.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ 63 (385)
T 3p8q_A 37 KQLQSDLMKVQEELTKSGTRLFDLEQK 63 (385)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444443
No 414
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.64 E-value=3e+02 Score=24.23 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014660 302 QAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~lq 351 (421)
.+|+..|+.+++.-++-...|..-+...++.+.+.+......|.++..+.
T Consensus 85 ~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 85 AEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 415
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=24.56 E-value=4.7e+02 Score=25.03 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCcchhhhhh
Q 014660 302 QAEAEELSRKVDSLIDENA----SLKSEI-NQLSENSEKLRQENAALLEKLKSAQLGNKQEIVLNEDKRVTPVSTENLLS 376 (421)
Q Consensus 302 qa~leeLE~rVe~L~~EN~----~L~~el-~~L~e~~~~L~~EN~~LkekL~~lql~~~~E~~~~~~~~~~p~~~e~lls 376 (421)
..++++++.++..|...+. .+++++ ++.++.+..|+.|+..-|++|....+.. .++.+++ ......++|+.
T Consensus 37 MkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~sLEqE~a~ErqqL~etH~qR-V~a~LNe---rrr~Ale~y~~ 112 (239)
T 3k66_A 37 MKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSSLEEEHKRMRKEIEAVHEER-VQAMLNE---KKRDATHDYRQ 112 (239)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHH
Confidence 4678899999999988763 344443 5678888899999999999998764332 2233321 11235677777
Q ss_pred hc
Q 014660 377 RV 378 (421)
Q Consensus 377 ~v 378 (421)
.|
T Consensus 113 AL 114 (239)
T 3k66_A 113 AL 114 (239)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 416
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=24.51 E-value=16 Score=37.33 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 014660 326 INQLSENSEKLRQE 339 (421)
Q Consensus 326 l~~L~e~~~~L~~E 339 (421)
+..|++++.+|+.|
T Consensus 379 ~~~le~~~~~~~~~ 392 (427)
T 2qag_B 379 KKKLEDKKKSLDDE 392 (427)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 417
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=24.51 E-value=2.2e+02 Score=22.07 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHhh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQ---L--SENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~---L--~e~~~~L~~EN~~LkekL~~lq 351 (421)
.++|..++..|+.|.-.|+-+... | -.++..++...+.++.-|.+-+
T Consensus 14 ~~EL~~~l~elk~ELf~LR~q~atggql~n~~~ir~vRr~IARi~Tvl~er~ 65 (71)
T 1vq8_V 14 PAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEG 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888777765543 1 2345566666676666665443
No 418
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=24.49 E-value=2.7e+02 Score=22.12 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
-+..+..|+.++..++.+-.....+...|-.--..|..|...-|.-|
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555666666666666666666666666655566666666655444
No 419
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=24.43 E-value=1.4e+02 Score=25.99 Aligned_cols=9 Identities=0% Similarity=-0.267 Sum_probs=3.9
Q ss_pred ccccccccc
Q 014660 389 EEGGHLFEK 397 (421)
Q Consensus 389 ~~~~~~~~~ 397 (421)
.++|=||-+
T Consensus 98 ~e~CCfyin 106 (125)
T 4g2k_A 98 GPDCSIGIE 106 (125)
T ss_dssp CGGGGCCCC
T ss_pred cccceeecc
Confidence 344444433
No 420
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=24.22 E-value=2.7e+02 Score=22.09 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS--------------ENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~--------------e~~~~L~~EN~~LkekL~~lq 351 (421)
+++|+.+|..|++.-.++.-.|-.|. +++-..-.+...+|.+|+.++
T Consensus 5 i~eLkkevkKL~~~A~q~kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~ 65 (71)
T 2js5_A 5 AEELKAKLKKLNAQATALKMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 421
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.14 E-value=3.9e+02 Score=23.90 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 319 NASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 319 N~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
...+..++..|++++...+.-...|..+|..+
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555544444455555555544
No 422
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=24.02 E-value=1.4e+02 Score=19.41 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~ 327 (421)
|..+|-+|+.|...|+.|+.
T Consensus 5 lkdevgelkgevralkdevk 24 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHh
Confidence 44444444444444444443
No 423
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.96 E-value=2.3e+02 Score=23.53 Aligned_cols=21 Identities=48% Similarity=0.525 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEI 326 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el 326 (421)
..|.++++.|..|...|..+|
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l 72 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEI 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444333333333333
No 424
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=23.71 E-value=1.7e+02 Score=25.42 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHhhccccccc
Q 014660 305 AEELSRKVDSLIDENASLKSEINQL---S--ENSEKLRQENAALLEKLKSAQLGNKQEI 358 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L---~--e~~~~L~~EN~~LkekL~~lql~~~~E~ 358 (421)
.+||..++.+|+.|.-.|+-+...- . .++..++...+.++..|.+-+...+++.
T Consensus 15 ~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~vRRdIARi~Tvl~er~~~~lr~~ 73 (124)
T 4a17_U 15 EEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGIVRKAIAKYLTIINEKRRQAVKDQ 73 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888887766533 2 4456666777777777766555554443
No 425
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=23.69 E-value=2.6e+02 Score=25.95 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 299 LRKQAEAEELSRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 299 lRKqa~leeLE~rVe~L~~EN~~L~~el~ 327 (421)
.+|.+-++-|..++..|+.+-..|..++.
T Consensus 15 ~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 15 QKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888877777777766654
No 426
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.65 E-value=1.6e+02 Score=26.73 Aligned_cols=30 Identities=7% Similarity=-0.021 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 321 SLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 321 ~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
..+.++..++.++..++.+...++.+|..+
T Consensus 102 ~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~ 131 (277)
T 2f1m_A 102 QALADAQQANAAVTAAKAAVETARINLAYT 131 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 334444445555555555666666666554
No 427
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=23.46 E-value=2.8e+02 Score=21.99 Aligned_cols=44 Identities=25% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKSEIN---QLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~---~L~e~~~~L~~EN~~LkekL 347 (421)
+.++|-.++..++.+...++.+-. .+...|......-..||.+.
T Consensus 12 E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~~LK~QA 58 (71)
T 1uix_A 12 EKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQA 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443222 24444444444445555554
No 428
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=23.31 E-value=6.4e+02 Score=26.78 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENSEK 335 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~ 335 (421)
++.++..++.-|..|+.....+..+.......+..
T Consensus 361 ArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a 395 (602)
T 1cii_A 361 ARNKITSAESAVNSARNNLSARTNEQKHANDALNA 395 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333333333333333
No 429
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=23.25 E-value=1.7e+02 Score=22.88 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=25.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 282 KRERRKQSNRESARRSRLRKQAEAEELSRKVDSL 315 (421)
Q Consensus 282 KR~RRk~sNRESARRSRlRKqa~leeLE~rVe~L 315 (421)
|+.+|+....++.||-|.|=...+++|..-|-..
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~ 38 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 38 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 4566667777788888888888888888777654
No 430
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=23.20 E-value=1.5e+02 Score=25.64 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKS 324 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~ 324 (421)
+..+.++++++.|..+...|++
T Consensus 138 ~~~~~l~~~i~~L~~~l~~le~ 159 (166)
T 3pjs_K 138 AAEEAYTRTTRALHERFDRLER 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 431
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=23.14 E-value=3.6e+02 Score=23.17 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 290 NRESARRSRLRKQAEAEELSRKVDSLID 317 (421)
Q Consensus 290 NRESARRSRlRKqa~leeLE~rVe~L~~ 317 (421)
++|+|++-=...++..+.++.+.+.+.+
T Consensus 35 ~AE~A~~~La~~~~l~~~i~er~~~i~~ 62 (119)
T 3etw_A 35 QADAARQALAQNEQVYNELSQRAQRLQA 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433334444444444444443
No 432
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.09 E-value=1e+02 Score=27.60 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 307 ELSRKVDSLIDENASLKSEINQLSENSEKLR 337 (421)
Q Consensus 307 eLE~rVe~L~~EN~~L~~el~~L~e~~~~L~ 337 (421)
.|+.+|++|++....-..+|+.|++++..|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666655555555555555555544
No 433
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=22.65 E-value=2.2e+02 Score=26.02 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
.+|+.+++.++.....+..++..|..++
T Consensus 82 l~l~~~Le~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 82 EENFEDLHEQKDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444
No 434
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=22.60 E-value=4.9e+02 Score=24.53 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 298 RLRKQAEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 298 RlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
+...+....++..+|...-.+...+++++..++
T Consensus 342 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~ 374 (442)
T 1yc9_A 342 VAQYNGTLVQALHEIADVVTSSQALQARINKTE 374 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555544444444444444443
No 435
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.40 E-value=2.6e+02 Score=23.50 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 296 RSRLRKQAEAEELSRKVDSLIDENASLKSEIN 327 (421)
Q Consensus 296 RSRlRKqa~leeLE~rVe~L~~EN~~L~~el~ 327 (421)
.|=.+++++-.+-..+|+.|+.|...|..+|.
T Consensus 53 ~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 53 ESLEKKVSQALEQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433444445544444444444433
No 436
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.36 E-value=1.6e+02 Score=22.47 Aligned_cols=33 Identities=6% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
+-+.|+.|+.+-+.|...-...+..-.+|+.+|
T Consensus 30 RGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 30 RGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777766666666665543
No 437
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=22.26 E-value=5.3e+02 Score=24.77 Aligned_cols=30 Identities=3% Similarity=0.093 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 301 KQAEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 301 Kqa~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
.+....++..+|...-.+...+++++..++
T Consensus 358 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~ 387 (474)
T 3d5k_A 358 YEKAIQTAFQEVADGLAARGTFTEQLQAQR 387 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 438
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.16 E-value=2.9e+02 Score=26.54 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 014660 304 EAEELSRKVDSLIDENASLKSEINQLS-------ENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~el~~L~-------e~~~~L~~EN~~LkekL~~l 350 (421)
.++-|+.|......|..++-.+|+.|. +++..|+.+-..|...|..+
T Consensus 164 ~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V 217 (242)
T 3uux_B 164 SLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQI 217 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345666666666666666666666554 34455555555555555544
No 439
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.87 E-value=2.1e+02 Score=22.23 Aligned_cols=47 Identities=23% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhh
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS-----ENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~-----e~~~~L~~EN~~LkekL~~lq 351 (421)
.+||..++..|+.|.-.|+-+...-+ .++..++...+.++..|.+-+
T Consensus 11 ~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~ 62 (72)
T 3j21_W 11 IEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778877777777776655332 344555556666666555433
No 440
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.82 E-value=1.9e+02 Score=22.78 Aligned_cols=15 Identities=13% Similarity=0.448 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDE 318 (421)
Q Consensus 304 ~leeLE~rVe~L~~E 318 (421)
.|++|+..|+.|...
T Consensus 33 ~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 33 NLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC
Confidence 344444555444444
No 441
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=21.69 E-value=1.4e+02 Score=24.80 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=9.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHH
Q 014660 307 ELSRKVD-SLIDENASLKSEIN 327 (421)
Q Consensus 307 eLE~rVe-~L~~EN~~L~~el~ 327 (421)
+|..+++ +|......|.++++
T Consensus 37 ~LR~~l~~~l~~~~~~L~k~~~ 58 (97)
T 1hs7_A 37 ELRYKIETELIPNCTSVRDKIE 58 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 44444444444444
No 442
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=21.68 E-value=83 Score=27.72 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
+.-|-.|++.|.++.+.|..++.+|+
T Consensus 100 L~~~laqLe~ls~qL~~ls~~v~~L~ 125 (140)
T 3iyn_Q 100 LTALLAQLDSLTRELNVVSQQLLDLR 125 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444544444444444444444
No 443
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=21.61 E-value=51 Score=33.34 Aligned_cols=11 Identities=36% Similarity=0.434 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 014660 337 RQENAALLEKL 347 (421)
Q Consensus 337 ~~EN~~LkekL 347 (421)
..+...|.+++
T Consensus 81 ~~~~~~~~~~~ 91 (425)
T 2dq3_A 81 KEEIDRLEEEL 91 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 444
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.56 E-value=2.4e+02 Score=25.52 Aligned_cols=22 Identities=5% Similarity=0.045 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014660 308 LSRKVDSLIDENASLKSEINQL 329 (421)
Q Consensus 308 LE~rVe~L~~EN~~L~~el~~L 329 (421)
|+++.+.|+++...|+..+..|
T Consensus 84 l~~~~~~l~~~i~~l~~~~~~l 105 (278)
T 1r8e_A 84 YTEQERQIREKLDFLSALEQTI 105 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333333
No 445
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=21.49 E-value=2.7e+02 Score=21.05 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKL 336 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L 336 (421)
+.+|+.++..|+.-...|..+++.+.-..+.+
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~ 39 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555444444444444444433333
No 446
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=21.39 E-value=2e+02 Score=21.71 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014660 326 INQLSENSEKLRQENAALLEKLK 348 (421)
Q Consensus 326 l~~L~e~~~~L~~EN~~LkekL~ 348 (421)
..++.....++..-...+...|.
T Consensus 58 ~~~~~~~~~~~~~~L~~i~~~L~ 80 (99)
T 3zbh_A 58 YQELRPSFEKMAVLLNEVGQQLH 80 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 447
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=21.32 E-value=85 Score=24.64 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 014660 304 EAEELSRKVDSLIDENASLKS------EINQLSENSEKLRQENAALL 344 (421)
Q Consensus 304 ~leeLE~rVe~L~~EN~~L~~------el~~L~e~~~~L~~EN~~Lk 344 (421)
++..|..+-..|..+...|.. ++.+|+.+-..|..|...|.
T Consensus 18 ~f~~L~~eH~~LD~~I~~le~~~~~~~~l~~LKk~KL~LKDeI~~lL 64 (76)
T 1zhc_A 18 HFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMI 64 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhHHHHHHHH
Confidence 334444444444444444333 44444444444444443333
No 448
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.30 E-value=1.3e+02 Score=19.52 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 014660 323 KSEINQLSE 331 (421)
Q Consensus 323 ~~el~~L~e 331 (421)
-+|++.|++
T Consensus 7 ykeledlqe 15 (27)
T 3twe_A 7 YKELEDLQE 15 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
No 449
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=21.27 E-value=1.4e+02 Score=22.63 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 014660 305 AEELSRKVDSL 315 (421)
Q Consensus 305 leeLE~rVe~L 315 (421)
+..|...+..|
T Consensus 32 l~~L~~~~~~L 42 (93)
T 4ioe_A 32 INRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 450
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=21.25 E-value=3.2e+02 Score=23.81 Aligned_cols=50 Identities=8% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhh
Q 014660 302 QAEAEELSRKVDSL-IDENASLKSEINQLS--------ENSEKLRQENAALLEKLKSAQ 351 (421)
Q Consensus 302 qa~leeLE~rVe~L-~~EN~~L~~el~~L~--------e~~~~L~~EN~~LkekL~~lq 351 (421)
++=++.|+.+++.| ..+-..+.+++...+ .+|...+.+...|..+|..|+
T Consensus 8 ~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~ 66 (158)
T 2p4v_A 8 REGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLT 66 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHH
No 451
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.25 E-value=96 Score=30.62 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=7.1
Q ss_pred CCCcchhhhhhh
Q 014660 366 VTPVSTENLLSR 377 (421)
Q Consensus 366 ~~p~~~e~lls~ 377 (421)
..+.++.+++..
T Consensus 71 ~~~~dC~~i~~~ 82 (323)
T 1lwu_B 71 VSGMHCEDIYRN 82 (323)
T ss_dssp CCBSSHHHHHHT
T ss_pred CCCCCHHHHHhc
Confidence 345667777643
No 452
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=21.20 E-value=4.4e+02 Score=23.45 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 284 ERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKS 349 (421)
Q Consensus 284 ~RRk~sNRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~ 349 (421)
.+-.-.|..|--.+-.+=.+..+.++.++..|+........+.......+..|+.++..|..+|..
T Consensus 51 L~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 51 LKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 453
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=21.08 E-value=59 Score=28.65 Aligned_cols=9 Identities=44% Similarity=0.615 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 014660 322 LKSEINQLS 330 (421)
Q Consensus 322 L~~el~~L~ 330 (421)
|.++|..|.
T Consensus 110 ls~qL~~ls 118 (140)
T 3iyn_Q 110 LTRELNVVS 118 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 454
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=21.08 E-value=3e+02 Score=22.99 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENASLKSEINQLSENS 333 (421)
Q Consensus 306 eeLE~rVe~L~~EN~~L~~el~~L~e~~ 333 (421)
.+|-.++..-+.....-++.+..|++.+
T Consensus 60 Ae~DArLAeAka~~~Ka~~~~~el~~~I 87 (98)
T 4fm3_A 60 AELDARLAESKVLTQKSKDQLGELDKSL 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544444444444444444433
No 455
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.93 E-value=3.6e+02 Score=22.40 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 303 AEAEELSRKVDSLIDENASLKSEINQLS 330 (421)
Q Consensus 303 a~leeLE~rVe~L~~EN~~L~~el~~L~ 330 (421)
+.+|.++.+...|+.+-..|..+|+...
T Consensus 64 ~~LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 64 DQLEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 456
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=20.75 E-value=1.5e+02 Score=26.20 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=6.1
Q ss_pred hhhhhhhhcC
Q 014660 402 GAKLHQLLDA 411 (421)
Q Consensus 402 ~~kl~qll~~ 411 (421)
..-+.|+||.
T Consensus 158 d~~v~kVl~E 167 (179)
T 2gd5_A 158 EMEIDRILFE 167 (179)
T ss_dssp TTHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 4456777764
No 457
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=20.65 E-value=3.2e+02 Score=21.66 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 312 VDSLIDENASLKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 312 Ve~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
.+.|++-|+.|+.+...|..=-.+-+.|-..|..+++.+
T Consensus 21 reAlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EA 59 (70)
T 3brv_B 21 RDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEA 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555555566555555444444455555666665554
No 458
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.55 E-value=6e+02 Score=26.97 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 290 NRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQ 338 (421)
Q Consensus 290 NRESARRSRlRKqa~leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~ 338 (421)
|-|-|---|+|+. +.+...++..++...+.|+..++.+..+....+.
T Consensus 345 naevae~~~lrQR--lddArNEItsaeSaInslqaqvSa~t~e~k~A~d 391 (602)
T 1cii_A 345 NAEVAEWDKLRQR--LLDARNKITSAESAVNSARNNLSARTNEQKHAND 391 (602)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444422 5555555555555555555555555444444333
No 459
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=20.47 E-value=2.3e+02 Score=27.03 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLSENSEKLRQENAALLEKL 347 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~e~~~~L~~EN~~LkekL 347 (421)
++++|.++..|+....++.+.......+..+++.-.+.|-..+
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555555554444444444444444444444444
No 460
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=20.46 E-value=97 Score=22.77 Aligned_cols=31 Identities=35% Similarity=0.413 Sum_probs=16.1
Q ss_pred CchhhhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 014660 271 PETWIQNERELKRERRKQSNRESARRSRLRK 301 (421)
Q Consensus 271 ~e~~~qdErE~KR~RRk~sNRESARRSRlRK 301 (421)
+|+.-++.+.++|+||..+=+...--+|+-|
T Consensus 12 ~~lsa~EkaRLrRERR~aKi~~G~assRLNk 42 (46)
T 3sjd_D 12 SELTEAEKRRLLRERRQKKFSNGGASSRLNK 42 (46)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 4444556666677776666555544455543
No 461
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.41 E-value=2.1e+02 Score=21.36 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014660 322 LKSEINQLSENSEKLRQEN 340 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN 340 (421)
|...+...++.+.+|+.||
T Consensus 19 ler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 19 LERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhccC
Confidence 3333444444444444444
No 462
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=20.41 E-value=1.4e+02 Score=25.18 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 014660 306 EELSRKVDSLIDENA 320 (421)
Q Consensus 306 eeLE~rVe~L~~EN~ 320 (421)
..|..+|+.|+.+..
T Consensus 19 ~~l~~~~~~l~~~l~ 33 (182)
T 3kqg_A 19 SALNTKIRALQGSLE 33 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 463
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=20.40 E-value=4.2e+02 Score=26.23 Aligned_cols=9 Identities=11% Similarity=-0.130 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 014660 340 NAALLEKLK 348 (421)
Q Consensus 340 N~~LkekL~ 348 (421)
.+.|++++.
T Consensus 277 l~~~~~~~~ 285 (302)
T 3ibp_A 277 IRQLNSRRV 285 (302)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 464
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=20.34 E-value=22 Score=33.02 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014660 305 AEELSRKVDSLIDENASLKS 324 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~ 324 (421)
.+++.++++.|+++.++|++
T Consensus 258 ~~~~~~~~~~l~~~~~~l~~ 277 (285)
T 3rvy_A 258 EDNINNEIIKLREEIVELKE 277 (285)
T ss_dssp --------------------
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 465
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=20.24 E-value=22 Score=33.97 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=0.0
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCcccccCCCcccCCCCCCCCCCCCCCC
Q 014660 36 QAYYGPRVAIPPYYNSPIASGHAPQPYMWGPAQPMMPPYGAPYAAIYSTGGVYAHPAVPLGSHAHNHG 103 (421)
Q Consensus 36 QAYygp~~~~pp~f~s~vas~p~phPYMWG~~qpmmpPYGtPY~a~Yp~GgvYaHP~~p~g~~p~~~~ 103 (421)
|.|+ ++|+-|++. +..|++| ++++.-||..-|++.=||++|-+..| |++.++..++
T Consensus 391 ~~~~----~~~~~~p~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 446 (448)
T 2z73_A 391 QGYA----PPPQGYPPQ---GYPPQGY---PPQGYPPQGYPPPPQGAPPQGAPPAA--PPQGVDNQAY 446 (448)
T ss_dssp --------------------------------------------------------------------
T ss_pred CCCC----CCcCCCCCC---CCCCCCC---CCcCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC
No 466
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.23 E-value=1.9e+02 Score=24.64 Aligned_cols=29 Identities=7% Similarity=0.100 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014660 322 LKSEINQLSENSEKLRQENAALLEKLKSA 350 (421)
Q Consensus 322 L~~el~~L~e~~~~L~~EN~~LkekL~~l 350 (421)
|..++..|.++...|......|..+|..+
T Consensus 100 l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 100 MKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444554443
No 467
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.10 E-value=2.2e+02 Score=24.58 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhccccccc
Q 014660 305 AEELSRKVDSLIDENASLKSEINQLS-----ENSEKLRQENAALLEKLKSAQLGNKQEI 358 (421)
Q Consensus 305 leeLE~rVe~L~~EN~~L~~el~~L~-----e~~~~L~~EN~~LkekL~~lql~~~~E~ 358 (421)
.+||..++.+|+.|.-.|+-+...-+ .++..++...+.++..|.+-+....++.
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~atgq~len~~rir~vRrdIARI~Tvl~er~~~~lr~~ 72 (123)
T 2zkr_v 14 KEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKF 72 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888877665431 4566777778888877776665555554
Done!