Query 014661
Match_columns 420
No_of_seqs 171 out of 1590
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 100.0 1.3E-72 4.3E-77 594.1 25.3 386 8-420 3-402 (595)
2 1ltl_A DNA replication initiat 100.0 7.9E-53 2.7E-57 403.5 25.4 266 7-309 12-278 (279)
3 2vl6_A SSO MCM N-TER, minichro 100.0 6.5E-51 2.2E-55 388.5 25.6 252 3-275 4-267 (268)
4 3f8t_A Predicted ATPase involv 100.0 4E-50 1.4E-54 402.1 10.4 226 161-420 78-311 (506)
5 2r44_A Uncharacterized protein 98.9 2.1E-09 7.1E-14 104.5 7.4 99 305-420 18-120 (331)
6 3nbx_X ATPase RAVA; AAA+ ATPas 98.8 2.4E-09 8.2E-14 109.9 5.9 100 305-420 13-120 (500)
7 1g8p_A Magnesium-chelatase 38 98.8 1.8E-09 6.3E-14 105.3 3.1 94 315-420 25-155 (350)
8 1um8_A ATP-dependent CLP prote 98.5 4.8E-08 1.7E-12 96.7 3.2 114 307-420 14-148 (376)
9 3k1j_A LON protease, ATP-depen 98.3 2.3E-07 8E-12 97.6 4.6 47 314-374 41-87 (604)
10 1ofh_A ATP-dependent HSL prote 98.3 1.7E-07 5.7E-12 89.5 1.7 115 306-420 7-127 (310)
11 3n70_A Transport activator; si 98.1 1.2E-06 4E-11 74.6 3.2 65 346-420 23-87 (145)
12 3co5_A Putative two-component 98.0 8.1E-07 2.8E-11 75.5 0.7 60 347-420 27-86 (143)
13 3hws_A ATP-dependent CLP prote 98.0 2.2E-07 7.4E-12 91.5 -3.7 113 308-420 9-127 (363)
14 4fcw_A Chaperone protein CLPB; 97.9 2.5E-06 8.6E-11 81.5 2.1 110 308-420 11-130 (311)
15 2bjv_A PSP operon transcriptio 97.9 2.7E-06 9.3E-11 79.6 2.1 73 348-420 30-111 (265)
16 3pfi_A Holliday junction ATP-d 97.9 4.9E-06 1.7E-10 80.6 3.8 87 315-420 30-117 (338)
17 1ojl_A Transcriptional regulat 97.9 2.6E-06 8.8E-11 81.9 1.1 74 346-420 24-107 (304)
18 3syl_A Protein CBBX; photosynt 97.8 9.1E-06 3.1E-10 77.5 2.7 106 306-419 23-140 (309)
19 3b9p_A CG5977-PA, isoform A; A 97.6 2.3E-05 7.9E-10 74.4 2.8 61 315-376 22-83 (297)
20 3eie_A Vacuolar protein sortin 97.6 9.1E-06 3.1E-10 78.5 -0.2 60 315-376 19-80 (322)
21 3m6a_A ATP-dependent protease 97.6 3.6E-05 1.2E-09 79.8 4.2 62 308-376 75-137 (543)
22 3vfd_A Spastin; ATPase, microt 97.5 4.5E-05 1.5E-09 75.6 3.8 61 315-376 116-177 (389)
23 2qz4_A Paraplegin; AAA+, SPG7, 97.5 2.6E-05 9E-10 72.3 1.9 58 315-374 7-66 (262)
24 1r6b_X CLPA protein; AAA+, N-t 97.5 7E-05 2.4E-09 80.7 4.7 102 308-420 452-568 (758)
25 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.00012 4.1E-09 70.7 5.9 56 315-371 13-69 (322)
26 2zan_A Vacuolar protein sortin 97.5 6.7E-05 2.3E-09 75.8 4.2 56 315-371 135-191 (444)
27 1hqc_A RUVB; extended AAA-ATPa 97.4 5.6E-05 1.9E-09 72.4 2.9 87 314-420 12-101 (324)
28 2qp9_X Vacuolar protein sortin 97.3 3E-05 1E-09 76.0 0.1 60 315-376 52-113 (355)
29 3d8b_A Fidgetin-like protein 1 97.3 5.5E-05 1.9E-09 74.2 1.9 62 315-376 85-146 (357)
30 3h4m_A Proteasome-activating n 97.3 6.8E-05 2.3E-09 70.6 1.6 60 315-376 18-80 (285)
31 3pvs_A Replication-associated 97.2 8.1E-05 2.8E-09 75.3 1.9 87 315-420 27-117 (447)
32 3uk6_A RUVB-like 2; hexameric 97.2 0.00038 1.3E-08 67.9 6.6 50 314-372 44-95 (368)
33 3pxi_A Negative regulator of g 97.1 0.00039 1.3E-08 74.9 5.5 100 310-420 487-590 (758)
34 2chg_A Replication factor C sm 97.1 0.00029 9.8E-09 62.7 3.5 44 315-370 18-61 (226)
35 2kjq_A DNAA-related protein; s 97.0 0.00052 1.8E-08 58.5 4.8 52 349-419 38-93 (149)
36 1sxj_C Activator 1 40 kDa subu 97.0 0.00012 4.1E-09 71.0 0.6 45 315-371 26-70 (340)
37 3t15_A Ribulose bisphosphate c 97.0 0.00023 7.8E-09 67.7 2.6 32 344-375 33-64 (293)
38 2r62_A Cell division protease 97.0 0.00013 4.4E-09 68.1 0.5 58 315-374 12-71 (268)
39 1in4_A RUVB, holliday junction 96.9 0.00071 2.4E-08 65.5 4.8 58 315-379 26-84 (334)
40 1iqp_A RFCS; clamp loader, ext 96.8 0.00029 9.8E-09 67.2 1.0 45 315-371 26-70 (327)
41 1g41_A Heat shock protein HSLU 96.8 0.0008 2.7E-08 67.6 4.3 71 307-377 8-80 (444)
42 3bos_A Putative DNA replicatio 96.7 0.0014 4.7E-08 59.3 5.0 57 349-419 54-114 (242)
43 1lv7_A FTSH; alpha/beta domain 96.6 0.0015 5.1E-08 60.4 4.7 63 315-379 13-78 (257)
44 2chq_A Replication factor C sm 96.6 0.00061 2.1E-08 64.6 2.0 44 315-370 18-61 (319)
45 1d2n_A N-ethylmaleimide-sensit 96.6 0.0002 6.9E-09 67.0 -1.5 27 347-373 64-90 (272)
46 1sxj_B Activator 1 37 kDa subu 96.4 0.00073 2.5E-08 64.2 0.9 45 315-371 22-66 (323)
47 1jbk_A CLPB protein; beta barr 96.3 0.0048 1.6E-07 53.2 5.9 47 313-371 21-67 (195)
48 1ny5_A Transcriptional regulat 96.3 0.001 3.5E-08 65.9 1.6 72 346-420 159-242 (387)
49 2x8a_A Nuclear valosin-contain 96.3 0.002 6.7E-08 60.6 3.1 63 315-380 11-78 (274)
50 2c9o_A RUVB-like 1; hexameric 96.2 0.0018 6.3E-08 65.4 2.9 53 311-372 34-88 (456)
51 1qvr_A CLPB protein; coiled co 96.2 0.0031 1.1E-07 68.8 4.6 100 315-420 559-671 (854)
52 3dzd_A Transcriptional regulat 96.2 0.0028 9.6E-08 62.2 3.9 74 346-420 151-233 (368)
53 2p65_A Hypothetical protein PF 96.1 0.0056 1.9E-07 52.7 5.2 46 314-371 22-67 (187)
54 1ixz_A ATP-dependent metallopr 96.1 0.0041 1.4E-07 57.2 4.5 27 349-375 51-77 (254)
55 3cf0_A Transitional endoplasmi 96.1 0.0072 2.5E-07 57.4 6.3 60 315-376 16-78 (301)
56 1sxj_A Activator 1 95 kDa subu 96.0 0.0063 2.1E-07 62.5 5.5 59 315-375 40-105 (516)
57 3u61_B DNA polymerase accessor 96.0 0.0038 1.3E-07 59.7 3.7 87 315-420 27-116 (324)
58 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0062 2.1E-07 65.4 5.4 45 315-371 187-231 (758)
59 3hu3_A Transitional endoplasmi 95.8 0.0013 4.5E-08 67.1 -0.4 60 315-376 205-267 (489)
60 1sxj_D Activator 1 41 kDa subu 95.8 0.0049 1.7E-07 59.3 3.6 45 315-371 38-82 (353)
61 1iy2_A ATP-dependent metallopr 95.7 0.0076 2.6E-07 56.3 4.5 27 349-375 75-101 (278)
62 4b4t_K 26S protease regulatory 95.6 0.013 4.3E-07 58.7 5.7 29 349-377 208-236 (428)
63 1qvr_A CLPB protein; coiled co 95.5 0.0079 2.7E-07 65.6 4.3 45 315-371 171-215 (854)
64 1njg_A DNA polymerase III subu 95.4 0.016 5.6E-07 51.6 5.3 47 314-371 23-69 (250)
65 2dhr_A FTSH; AAA+ protein, hex 95.4 0.019 6.5E-07 58.6 6.2 64 315-380 32-98 (499)
66 3pxg_A Negative regulator of g 95.2 0.018 6E-07 58.3 5.3 45 315-371 181-225 (468)
67 3io5_A Recombination and repai 95.1 0.015 5.1E-07 55.7 4.2 38 344-383 27-70 (333)
68 4b4t_M 26S protease regulatory 95.1 0.02 6.9E-07 57.3 5.4 29 349-377 217-245 (434)
69 4b4t_J 26S protease regulatory 95.0 0.024 8.3E-07 56.0 5.4 29 349-377 184-212 (405)
70 1tue_A Replication protein E1; 94.9 0.013 4.3E-07 52.6 2.8 23 349-371 60-82 (212)
71 4b4t_L 26S protease subunit RP 94.8 0.029 9.9E-07 56.2 5.7 29 349-377 217-245 (437)
72 1upt_A ARL1, ADP-ribosylation 94.7 0.017 5.7E-07 48.8 3.1 27 343-369 3-29 (171)
73 3clv_A RAB5 protein, putative; 94.7 0.018 6.2E-07 49.9 3.4 29 342-370 2-30 (208)
74 4b4t_H 26S protease regulatory 94.5 0.037 1.3E-06 55.6 5.5 29 349-377 245-273 (467)
75 2ce7_A Cell division protein F 94.4 0.03 1E-06 56.8 4.7 63 315-379 17-82 (476)
76 1sxj_E Activator 1 40 kDa subu 94.4 0.022 7.5E-07 54.8 3.6 46 315-371 15-61 (354)
77 4b4t_I 26S protease regulatory 94.4 0.047 1.6E-06 54.4 5.8 29 349-377 218-246 (437)
78 3ec2_A DNA replication protein 94.4 0.017 5.9E-07 50.0 2.4 24 349-372 40-63 (180)
79 2v1u_A Cell division control p 94.3 0.044 1.5E-06 53.0 5.4 50 314-371 19-68 (387)
80 3pxi_A Negative regulator of g 94.2 0.038 1.3E-06 59.3 5.3 45 315-371 181-225 (758)
81 3q85_A GTP-binding protein REM 94.2 0.025 8.4E-07 47.7 3.0 23 347-369 2-24 (169)
82 3t1o_A Gliding protein MGLA; G 94.2 0.026 8.7E-07 48.9 3.1 29 345-373 12-40 (198)
83 3tr0_A Guanylate kinase, GMP k 94.0 0.034 1.1E-06 48.9 3.7 34 346-381 7-40 (205)
84 2w58_A DNAI, primosome compone 94.0 0.026 8.9E-07 49.7 2.8 24 348-371 55-78 (202)
85 3lxw_A GTPase IMAP family memb 93.9 0.054 1.8E-06 49.7 4.9 27 345-371 19-45 (247)
86 2bdt_A BH3686; alpha-beta prot 93.9 0.041 1.4E-06 47.9 3.9 32 349-380 4-35 (189)
87 1zp6_A Hypothetical protein AT 93.8 0.04 1.4E-06 47.9 3.8 32 349-380 11-43 (191)
88 3lxx_A GTPase IMAP family memb 93.8 0.049 1.7E-06 49.4 4.4 28 345-372 27-54 (239)
89 1ye8_A Protein THEP1, hypothet 93.8 0.029 9.8E-07 49.0 2.7 24 349-372 2-25 (178)
90 1pzn_A RAD51, DNA repair and r 93.8 0.045 1.5E-06 53.2 4.3 37 345-382 130-176 (349)
91 2erx_A GTP-binding protein DI- 93.6 0.036 1.2E-06 46.6 3.0 23 347-369 3-25 (172)
92 1ypw_A Transitional endoplasmi 93.6 0.04 1.4E-06 59.7 4.0 34 346-379 237-271 (806)
93 4a74_A DNA repair and recombin 93.6 0.056 1.9E-06 48.2 4.4 37 345-382 24-70 (231)
94 1kao_A RAP2A; GTP-binding prot 93.6 0.035 1.2E-06 46.4 2.8 23 347-369 3-25 (167)
95 4akg_A Glutathione S-transfera 93.6 0.036 1.2E-06 66.9 3.8 23 348-370 1268-1291(2695)
96 1m7b_A RND3/RHOE small GTP-bin 93.5 0.036 1.2E-06 47.8 2.8 24 346-369 6-29 (184)
97 1fnn_A CDC6P, cell division co 93.5 0.05 1.7E-06 52.7 4.2 51 314-372 17-69 (389)
98 3q72_A GTP-binding protein RAD 93.5 0.036 1.2E-06 46.6 2.7 22 348-369 3-24 (166)
99 1jr3_A DNA polymerase III subu 93.4 0.08 2.7E-06 51.0 5.5 46 315-371 17-62 (373)
100 2nzj_A GTP-binding protein REM 93.4 0.039 1.3E-06 46.7 2.9 24 347-370 4-27 (175)
101 3oes_A GTPase rhebl1; small GT 93.4 0.037 1.3E-06 48.5 2.8 31 340-370 17-47 (201)
102 1z08_A RAS-related protein RAB 93.4 0.038 1.3E-06 46.5 2.8 24 346-369 5-28 (170)
103 1z2a_A RAS-related protein RAB 93.4 0.042 1.4E-06 46.0 3.0 23 347-369 5-27 (168)
104 1kag_A SKI, shikimate kinase I 93.4 0.055 1.9E-06 46.2 3.7 29 349-378 6-34 (173)
105 1c1y_A RAS-related protein RAP 93.3 0.041 1.4E-06 46.1 2.9 23 347-369 3-25 (167)
106 1l8q_A Chromosomal replication 93.3 0.044 1.5E-06 52.2 3.4 32 348-379 38-73 (324)
107 2zej_A Dardarin, leucine-rich 93.3 0.039 1.3E-06 47.7 2.7 23 348-370 3-25 (184)
108 1wms_A RAB-9, RAB9, RAS-relate 93.3 0.049 1.7E-06 46.2 3.3 24 346-369 6-29 (177)
109 1ek0_A Protein (GTP-binding pr 93.3 0.042 1.4E-06 46.1 2.8 23 347-369 3-25 (170)
110 1r8s_A ADP-ribosylation factor 93.3 0.042 1.5E-06 46.0 2.8 21 348-368 1-21 (164)
111 1g16_A RAS-related protein SEC 93.3 0.048 1.6E-06 45.8 3.2 23 347-369 3-25 (170)
112 2hxs_A RAB-26, RAS-related pro 93.3 0.044 1.5E-06 46.6 3.0 23 347-369 6-28 (178)
113 1z0j_A RAB-22, RAS-related pro 93.2 0.043 1.5E-06 46.1 2.8 24 347-370 6-29 (170)
114 1ky3_A GTP-binding protein YPT 93.1 0.046 1.6E-06 46.5 2.9 25 345-369 6-30 (182)
115 1r2q_A RAS-related protein RAB 93.1 0.045 1.5E-06 45.9 2.8 24 346-369 5-28 (170)
116 1u8z_A RAS-related protein RAL 93.1 0.048 1.7E-06 45.5 2.9 23 347-369 4-26 (168)
117 3bc1_A RAS-related protein RAB 93.0 0.047 1.6E-06 46.9 2.8 24 346-369 10-33 (195)
118 1z0f_A RAB14, member RAS oncog 93.0 0.048 1.6E-06 46.2 2.8 24 346-369 14-37 (179)
119 1n0w_A DNA repair protein RAD5 93.0 0.074 2.5E-06 47.9 4.2 37 345-382 23-69 (243)
120 2gf0_A GTP-binding protein DI- 93.0 0.05 1.7E-06 47.2 2.9 25 345-369 6-30 (199)
121 3ihw_A Centg3; RAS, centaurin, 92.9 0.052 1.8E-06 47.0 3.0 26 344-369 17-43 (184)
122 2ce2_X GTPase HRAS; signaling 92.9 0.049 1.7E-06 45.3 2.7 23 347-369 3-25 (166)
123 2gj8_A MNME, tRNA modification 92.8 0.054 1.8E-06 46.4 2.9 23 348-370 5-27 (172)
124 2dr3_A UPF0273 protein PH0284; 92.8 0.055 1.9E-06 48.8 3.1 37 345-382 22-62 (247)
125 1zd9_A ADP-ribosylation factor 92.8 0.05 1.7E-06 47.1 2.6 27 343-369 18-44 (188)
126 2cxx_A Probable GTP-binding pr 92.8 0.052 1.8E-06 46.7 2.7 23 348-370 2-24 (190)
127 3llu_A RAS-related GTP-binding 92.8 0.054 1.9E-06 47.3 2.9 25 345-369 18-42 (196)
128 1ksh_A ARF-like protein 2; sma 92.8 0.056 1.9E-06 46.4 2.9 25 345-369 16-40 (186)
129 2f9l_A RAB11B, member RAS onco 92.7 0.065 2.2E-06 46.9 3.3 24 348-371 6-29 (199)
130 3cph_A RAS-related protein SEC 92.7 0.057 1.9E-06 47.5 3.0 26 343-368 16-41 (213)
131 2iwr_A Centaurin gamma 1; ANK 92.7 0.043 1.5E-06 46.8 2.1 23 347-369 7-29 (178)
132 2oil_A CATX-8, RAS-related pro 92.7 0.055 1.9E-06 46.9 2.8 25 345-369 23-47 (193)
133 2lkc_A Translation initiation 92.7 0.065 2.2E-06 45.5 3.2 25 345-369 6-30 (178)
134 1zj6_A ADP-ribosylation factor 92.7 0.061 2.1E-06 46.4 3.1 24 346-369 15-38 (187)
135 3kkq_A RAS-related protein M-R 92.6 0.059 2E-06 46.1 2.9 24 346-369 17-40 (183)
136 3q3j_B RHO-related GTP-binding 92.6 0.057 2E-06 48.1 2.9 27 343-369 23-49 (214)
137 2g6b_A RAS-related protein RAB 92.6 0.058 2E-06 45.9 2.8 25 345-369 8-32 (180)
138 2wji_A Ferrous iron transport 92.6 0.06 2E-06 45.6 2.9 23 348-370 4-26 (165)
139 3lda_A DNA repair protein RAD5 92.6 0.095 3.3E-06 51.8 4.7 38 344-382 176-223 (400)
140 2y8e_A RAB-protein 6, GH09086P 92.6 0.057 2E-06 45.7 2.8 22 347-368 14-35 (179)
141 1x3s_A RAS-related protein RAB 92.6 0.059 2E-06 46.5 2.9 25 345-369 13-37 (195)
142 2efe_B Small GTP-binding prote 92.6 0.058 2E-06 45.9 2.7 24 346-369 11-34 (181)
143 2qby_A CDC6 homolog 1, cell di 92.6 0.089 3E-06 50.7 4.4 59 314-380 20-85 (386)
144 2fn4_A P23, RAS-related protei 92.5 0.058 2E-06 45.8 2.7 25 346-370 8-32 (181)
145 3tw8_B RAS-related protein RAB 92.5 0.059 2E-06 45.7 2.7 24 346-369 8-31 (181)
146 2bov_A RAla, RAS-related prote 92.5 0.065 2.2E-06 46.7 3.1 25 345-369 12-36 (206)
147 2r2a_A Uncharacterized protein 92.5 0.18 6.2E-06 44.7 5.9 18 349-366 7-24 (199)
148 2cjw_A GTP-binding protein GEM 92.5 0.064 2.2E-06 46.9 2.9 22 347-368 6-27 (192)
149 3c5c_A RAS-like protein 12; GD 92.5 0.062 2.1E-06 46.6 2.8 24 345-368 19-42 (187)
150 2atv_A RERG, RAS-like estrogen 92.4 0.064 2.2E-06 46.7 2.9 24 346-369 27-50 (196)
151 1svi_A GTP-binding protein YSX 92.4 0.067 2.3E-06 46.3 3.0 25 345-369 21-45 (195)
152 2q3h_A RAS homolog gene family 92.4 0.066 2.3E-06 46.7 3.0 27 343-369 16-42 (201)
153 1moz_A ARL1, ADP-ribosylation 92.4 0.054 1.9E-06 46.3 2.4 23 346-368 17-39 (183)
154 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.063 2.2E-06 45.8 2.8 22 347-368 5-26 (186)
155 2g3y_A GTP-binding protein GEM 92.4 0.061 2.1E-06 48.2 2.7 24 345-368 35-58 (211)
156 3bwd_D RAC-like GTP-binding pr 92.4 0.067 2.3E-06 45.6 2.9 24 346-369 7-30 (182)
157 3t5g_A GTP-binding protein RHE 92.4 0.065 2.2E-06 45.7 2.8 22 347-368 6-27 (181)
158 3te6_A Regulatory protein SIR3 92.3 0.056 1.9E-06 51.8 2.5 34 348-381 46-90 (318)
159 3reg_A RHO-like small GTPase; 92.3 0.067 2.3E-06 46.4 2.8 25 345-369 21-45 (194)
160 2dyk_A GTP-binding protein; GT 92.3 0.069 2.4E-06 44.4 2.8 22 349-370 3-24 (161)
161 4dsu_A GTPase KRAS, isoform 2B 92.3 0.067 2.3E-06 45.8 2.8 23 347-369 4-26 (189)
162 1fzq_A ADP-ribosylation factor 92.3 0.066 2.3E-06 46.1 2.7 25 346-370 15-39 (181)
163 2wjg_A FEOB, ferrous iron tran 92.3 0.084 2.9E-06 45.3 3.4 24 347-370 7-30 (188)
164 3dz8_A RAS-related protein RAB 92.2 0.08 2.7E-06 45.8 3.3 27 344-370 20-46 (191)
165 3cbq_A GTP-binding protein REM 92.2 0.066 2.3E-06 46.9 2.7 24 345-368 21-44 (195)
166 1nrj_B SR-beta, signal recogni 92.2 0.074 2.5E-06 47.1 3.1 27 345-371 10-36 (218)
167 2a9k_A RAS-related protein RAL 92.2 0.075 2.6E-06 45.3 3.0 24 346-369 17-40 (187)
168 2xtp_A GTPase IMAP family memb 92.2 0.1 3.5E-06 47.9 4.1 25 345-369 20-44 (260)
169 2a5j_A RAS-related protein RAB 92.2 0.089 3E-06 45.5 3.5 24 346-369 20-43 (191)
170 2qby_B CDC6 homolog 3, cell di 92.2 0.11 3.7E-06 50.4 4.4 49 314-370 20-68 (384)
171 2b6h_A ADP-ribosylation factor 92.2 0.073 2.5E-06 46.4 2.9 24 345-368 27-50 (192)
172 2bme_A RAB4A, RAS-related prot 92.1 0.07 2.4E-06 45.7 2.7 23 346-368 9-31 (186)
173 2fg5_A RAB-22B, RAS-related pr 92.1 0.069 2.4E-06 46.4 2.7 24 346-369 22-45 (192)
174 2gf9_A RAS-related protein RAB 92.1 0.073 2.5E-06 46.0 2.8 23 347-369 22-44 (189)
175 1zbd_A Rabphilin-3A; G protein 92.1 0.075 2.6E-06 46.4 2.9 23 347-369 8-30 (203)
176 2qgz_A Helicase loader, putati 92.1 0.068 2.3E-06 50.9 2.8 25 348-372 153-177 (308)
177 1z06_A RAS-related protein RAB 92.1 0.076 2.6E-06 45.8 2.9 24 345-368 18-41 (189)
178 2p5s_A RAS and EF-hand domain 92.0 0.087 3E-06 46.0 3.3 27 345-371 26-52 (199)
179 3vkg_A Dynein heavy chain, cyt 92.0 0.055 1.9E-06 66.0 2.5 27 347-373 1304-1330(3245)
180 4eun_A Thermoresistant glucoki 92.0 0.082 2.8E-06 46.5 3.1 32 349-381 31-62 (200)
181 1vg8_A RAS-related protein RAB 92.0 0.077 2.6E-06 46.4 2.9 25 345-369 6-30 (207)
182 2ged_A SR-beta, signal recogni 92.0 0.083 2.8E-06 45.6 3.0 27 345-371 46-72 (193)
183 3con_A GTPase NRAS; structural 91.9 0.078 2.7E-06 45.7 2.8 23 347-369 21-43 (190)
184 2h17_A ADP-ribosylation factor 91.9 0.071 2.4E-06 45.8 2.5 27 344-370 18-44 (181)
185 2bcg_Y Protein YP2, GTP-bindin 91.9 0.076 2.6E-06 46.5 2.7 24 346-369 7-30 (206)
186 2il1_A RAB12; G-protein, GDP, 91.9 0.073 2.5E-06 46.3 2.6 24 346-369 25-48 (192)
187 3tkl_A RAS-related protein RAB 91.8 0.084 2.9E-06 45.6 2.9 25 345-369 14-38 (196)
188 2fu5_C RAS-related protein RAB 91.8 0.052 1.8E-06 46.4 1.5 22 347-368 8-29 (183)
189 2f7s_A C25KG, RAS-related prot 91.8 0.11 3.9E-06 45.8 3.8 24 346-369 24-47 (217)
190 2fh5_B SR-beta, signal recogni 91.8 0.083 2.8E-06 46.6 2.8 25 345-369 5-29 (214)
191 1oix_A RAS-related protein RAB 91.8 0.089 3E-06 45.8 3.0 26 347-372 29-54 (191)
192 2ehv_A Hypothetical protein PH 91.8 0.14 4.8E-06 46.2 4.5 36 345-381 29-69 (251)
193 1qhx_A CPT, protein (chloramph 91.7 0.1 3.6E-06 44.6 3.3 28 349-376 5-32 (178)
194 2o52_A RAS-related protein RAB 91.7 0.085 2.9E-06 46.2 2.8 25 345-369 23-47 (200)
195 1m2o_B GTP-binding protein SAR 91.7 0.084 2.9E-06 45.9 2.7 24 346-369 22-45 (190)
196 2x77_A ADP-ribosylation factor 91.6 0.075 2.6E-06 45.8 2.4 23 346-368 21-43 (189)
197 2h57_A ADP-ribosylation factor 91.6 0.081 2.8E-06 45.7 2.6 25 345-369 19-43 (190)
198 3pqc_A Probable GTP-binding pr 91.6 0.096 3.3E-06 45.1 3.0 26 345-370 21-46 (195)
199 1htw_A HI0065; nucleotide-bind 91.6 0.098 3.3E-06 44.7 2.9 24 349-372 35-58 (158)
200 2ew1_A RAS-related protein RAB 91.5 0.09 3.1E-06 46.4 2.7 22 347-368 26-47 (201)
201 1gwn_A RHO-related GTP-binding 91.4 0.092 3.1E-06 46.4 2.7 24 346-369 27-50 (205)
202 2j0v_A RAC-like GTP-binding pr 91.4 0.11 3.9E-06 45.6 3.3 25 345-369 7-31 (212)
203 1knq_A Gluconate kinase; ALFA/ 91.4 0.11 3.7E-06 44.4 3.1 31 349-380 10-40 (175)
204 2j1l_A RHO-related GTP-binding 91.4 0.094 3.2E-06 46.5 2.8 23 347-369 34-56 (214)
205 2gco_A H9, RHO-related GTP-bin 91.3 0.095 3.2E-06 45.9 2.7 23 347-369 25-47 (201)
206 1u0j_A DNA replication protein 91.3 0.1 3.5E-06 48.6 2.9 25 349-373 106-130 (267)
207 1via_A Shikimate kinase; struc 91.3 0.11 3.7E-06 44.6 3.0 30 349-378 6-35 (175)
208 4gzl_A RAS-related C3 botulinu 91.2 0.1 3.4E-06 45.9 2.8 24 346-369 29-52 (204)
209 2hup_A RAS-related protein RAB 91.2 0.098 3.3E-06 45.9 2.7 23 347-369 29-51 (201)
210 3iij_A Coilin-interacting nucl 91.2 0.11 3.8E-06 44.6 3.0 33 347-379 11-43 (180)
211 1kgd_A CASK, peripheral plasma 91.2 0.11 3.7E-06 45.0 2.9 24 349-372 7-30 (180)
212 3vaa_A Shikimate kinase, SK; s 91.0 0.11 3.6E-06 45.8 2.7 28 349-376 27-54 (199)
213 2atx_A Small GTP binding prote 91.0 0.11 3.6E-06 45.1 2.7 25 346-370 17-41 (194)
214 2fv8_A H6, RHO-related GTP-bin 91.0 0.1 3.6E-06 45.8 2.7 24 347-370 25-48 (207)
215 1ypw_A Transitional endoplasmi 91.0 0.047 1.6E-06 59.1 0.4 60 315-374 478-538 (806)
216 1puj_A YLQF, conserved hypothe 91.0 0.26 8.9E-06 46.2 5.5 25 345-369 118-142 (282)
217 1ly1_A Polynucleotide kinase; 91.0 0.17 5.8E-06 43.1 3.9 30 349-378 4-33 (181)
218 1cke_A CK, MSSA, protein (cyti 91.0 0.11 3.9E-06 46.3 2.9 33 348-380 6-38 (227)
219 4gp7_A Metallophosphoesterase; 90.9 0.1 3.4E-06 44.9 2.4 20 346-366 9-28 (171)
220 4dkx_A RAS-related protein RAB 90.9 0.11 3.8E-06 46.7 2.7 21 347-367 13-33 (216)
221 3sop_A Neuronal-specific septi 90.8 0.093 3.2E-06 48.9 2.2 26 347-372 2-27 (270)
222 4bas_A ADP-ribosylation factor 90.8 0.11 3.8E-06 45.0 2.5 26 344-369 14-39 (199)
223 3dl0_A Adenylate kinase; phosp 90.7 0.14 4.7E-06 45.5 3.2 30 349-378 2-31 (216)
224 3cpj_B GTP-binding protein YPT 90.7 0.15 5E-06 45.5 3.4 24 347-370 13-36 (223)
225 2qt1_A Nicotinamide riboside k 90.7 0.2 7E-06 44.1 4.3 31 348-378 22-52 (207)
226 2z4s_A Chromosomal replication 90.6 0.11 3.9E-06 51.9 2.8 24 348-371 131-154 (440)
227 2p5t_B PEZT; postsegregational 90.6 0.29 9.9E-06 44.8 5.3 33 348-380 33-66 (253)
228 1f6b_A SAR1; gtpases, N-termin 90.5 0.1 3.6E-06 45.6 2.2 23 347-369 25-47 (198)
229 3r7w_A Gtpase1, GTP-binding pr 90.5 0.13 4.5E-06 48.7 3.0 22 347-368 3-24 (307)
230 3trf_A Shikimate kinase, SK; a 90.5 0.13 4.5E-06 44.3 2.8 28 349-376 7-34 (185)
231 2j41_A Guanylate kinase; GMP, 90.5 0.15 5E-06 44.7 3.1 24 349-372 8-32 (207)
232 3gj0_A GTP-binding nuclear pro 90.4 0.12 4.2E-06 45.8 2.6 22 345-366 13-34 (221)
233 3cf2_A TER ATPase, transitiona 90.4 0.18 6E-06 54.3 4.2 59 315-376 205-267 (806)
234 1pui_A ENGB, probable GTP-bind 90.4 0.084 2.9E-06 46.4 1.4 25 347-371 26-50 (210)
235 1y63_A LMAJ004144AAA protein; 90.3 0.14 4.9E-06 44.3 2.8 29 348-376 11-40 (184)
236 3k53_A Ferrous iron transport 90.3 0.15 5E-06 47.3 3.1 24 348-371 4-27 (271)
237 4djt_A GTP-binding nuclear pro 90.2 0.09 3.1E-06 46.5 1.5 24 345-368 9-32 (218)
238 2bbw_A Adenylate kinase 4, AK4 90.2 0.17 5.7E-06 46.1 3.4 24 349-372 29-55 (246)
239 2orw_A Thymidine kinase; TMTK, 90.2 0.34 1.2E-05 42.2 5.2 24 346-370 3-27 (184)
240 3a1s_A Iron(II) transport prot 90.2 0.13 4.6E-06 47.4 2.7 23 347-369 5-27 (258)
241 3lw7_A Adenylate kinase relate 90.1 0.19 6.3E-06 42.4 3.4 28 349-377 3-30 (179)
242 1zuh_A Shikimate kinase; alpha 90.1 0.15 5.2E-06 43.2 2.8 29 349-377 9-37 (168)
243 3hr8_A Protein RECA; alpha and 90.1 0.19 6.7E-06 48.8 3.8 38 345-383 60-101 (356)
244 3kb2_A SPBC2 prophage-derived 90.0 0.15 5.2E-06 43.1 2.8 25 349-373 3-27 (173)
245 2qu8_A Putative nucleolar GTP- 90.0 0.16 5.4E-06 45.5 2.9 24 346-369 28-51 (228)
246 1z6g_A Guanylate kinase; struc 89.8 0.19 6.6E-06 45.0 3.4 29 349-377 25-53 (218)
247 2yc2_C IFT27, small RAB-relate 89.8 0.074 2.5E-06 46.4 0.6 25 345-369 18-42 (208)
248 1xjc_A MOBB protein homolog; s 89.8 0.32 1.1E-05 42.0 4.6 23 349-371 6-28 (169)
249 3t5d_A Septin-7; GTP-binding p 89.8 0.15 5.2E-06 47.3 2.7 22 346-367 7-28 (274)
250 1znw_A Guanylate kinase, GMP k 89.7 0.17 5.9E-06 44.7 3.0 32 345-378 19-50 (207)
251 3b1v_A Ferrous iron uptake tra 89.7 0.16 5.6E-06 47.3 2.9 23 348-370 4-26 (272)
252 2gmg_A Hypothetical protein PF 89.6 0.26 8.9E-06 38.7 3.4 29 147-188 66-94 (105)
253 2qen_A Walker-type ATPase; unk 89.5 0.46 1.6E-05 44.9 6.0 54 314-382 12-65 (350)
254 2pcj_A ABC transporter, lipopr 89.3 0.19 6.5E-06 45.4 2.9 33 349-381 32-67 (224)
255 1v5w_A DMC1, meiotic recombina 89.3 0.38 1.3E-05 46.4 5.2 37 345-382 121-167 (343)
256 2qnr_A Septin-2, protein NEDD5 89.3 0.16 5.4E-06 48.1 2.5 23 347-369 18-40 (301)
257 3fb4_A Adenylate kinase; psych 89.3 0.17 6E-06 44.7 2.6 30 349-378 2-31 (216)
258 3cm0_A Adenylate kinase; ATP-b 89.2 0.17 5.9E-06 43.5 2.5 31 349-379 6-36 (186)
259 1lvg_A Guanylate kinase, GMP k 89.1 0.17 5.7E-06 44.6 2.3 24 349-372 6-29 (198)
260 1gvn_B Zeta; postsegregational 89.1 0.23 8E-06 46.6 3.5 32 348-379 34-66 (287)
261 3i8s_A Ferrous iron transport 89.1 0.19 6.6E-06 46.7 2.9 24 347-370 3-26 (274)
262 3gfo_A Cobalt import ATP-bindi 89.1 0.27 9.3E-06 45.9 3.9 36 345-381 33-71 (275)
263 1e6c_A Shikimate kinase; phosp 89.0 0.23 8E-06 42.0 3.2 28 349-376 4-31 (173)
264 3t61_A Gluconokinase; PSI-biol 89.0 0.2 6.8E-06 43.9 2.8 25 348-372 19-43 (202)
265 2onk_A Molybdate/tungstate ABC 88.9 0.23 8E-06 45.4 3.2 34 348-381 25-61 (240)
266 3th5_A RAS-related C3 botulinu 88.5 0.08 2.7E-06 46.4 0.0 24 345-368 28-51 (204)
267 3a00_A Guanylate kinase, GMP k 88.8 0.2 6.7E-06 43.5 2.6 23 350-372 4-26 (186)
268 2w0m_A SSO2452; RECA, SSPF, un 88.8 0.21 7.3E-06 44.3 2.9 36 345-381 22-61 (235)
269 1tf7_A KAIC; homohexamer, hexa 88.8 0.2 6.7E-06 51.3 2.9 34 349-382 41-79 (525)
270 2qor_A Guanylate kinase; phosp 88.7 0.22 7.6E-06 43.8 2.9 25 349-373 14-38 (204)
271 3cf2_A TER ATPase, transitiona 88.7 0.3 1E-05 52.5 4.4 60 316-377 479-541 (806)
272 2qag_C Septin-7; cell cycle, c 88.7 0.22 7.6E-06 49.5 3.1 25 347-371 31-55 (418)
273 3tau_A Guanylate kinase, GMP k 88.6 0.24 8.1E-06 43.9 3.0 25 349-373 10-34 (208)
274 1s96_A Guanylate kinase, GMP k 88.5 0.23 8E-06 44.7 2.9 27 345-372 15-41 (219)
275 2if2_A Dephospho-COA kinase; a 88.5 0.22 7.4E-06 43.7 2.7 22 349-370 3-24 (204)
276 3c8u_A Fructokinase; YP_612366 88.5 0.2 7E-06 44.3 2.5 24 349-372 24-47 (208)
277 3t34_A Dynamin-related protein 88.5 0.23 8E-06 48.0 3.1 26 349-374 36-63 (360)
278 2cbz_A Multidrug resistance-as 88.5 0.22 7.5E-06 45.4 2.7 25 349-373 33-57 (237)
279 1sgw_A Putative ABC transporte 88.4 0.25 8.5E-06 44.3 3.1 35 345-380 34-71 (214)
280 1nks_A Adenylate kinase; therm 88.4 0.22 7.6E-06 42.8 2.7 24 349-372 3-26 (194)
281 3tif_A Uncharacterized ABC tra 88.4 0.25 8.6E-06 44.9 3.1 32 349-380 33-67 (235)
282 1tf7_A KAIC; homohexamer, hexa 88.4 0.28 9.4E-06 50.2 3.7 37 345-382 280-320 (525)
283 1aky_A Adenylate kinase; ATP:A 88.3 0.26 9.1E-06 43.8 3.1 30 348-377 5-34 (220)
284 2vhj_A Ntpase P4, P4; non- hyd 88.3 0.24 8.1E-06 47.5 2.9 34 345-379 122-156 (331)
285 1kht_A Adenylate kinase; phosp 88.3 0.24 8.2E-06 42.6 2.8 24 349-372 5-28 (192)
286 1g6h_A High-affinity branched- 88.3 0.26 8.7E-06 45.5 3.1 36 345-381 32-70 (257)
287 3uie_A Adenylyl-sulfate kinase 88.3 0.23 7.9E-06 43.6 2.7 32 349-380 27-62 (200)
288 2ff7_A Alpha-hemolysin translo 88.3 0.26 8.8E-06 45.2 3.1 33 349-381 37-72 (247)
289 2rhm_A Putative kinase; P-loop 88.2 0.24 8.1E-06 42.8 2.7 24 348-371 6-29 (193)
290 2c95_A Adenylate kinase 1; tra 88.2 0.25 8.5E-06 42.8 2.9 29 348-376 10-38 (196)
291 2jaq_A Deoxyguanosine kinase; 88.2 0.24 8.3E-06 43.1 2.8 25 349-373 2-26 (205)
292 4dhe_A Probable GTP-binding pr 88.2 0.18 6E-06 44.7 1.9 24 346-369 28-51 (223)
293 3iby_A Ferrous iron transport 88.1 0.24 8.3E-06 45.6 2.8 22 349-370 3-24 (256)
294 1b0u_A Histidine permease; ABC 88.1 0.26 9E-06 45.6 3.1 33 349-381 34-69 (262)
295 1h65_A Chloroplast outer envel 88.1 0.25 8.7E-06 45.6 3.0 24 346-369 38-61 (270)
296 2iyv_A Shikimate kinase, SK; t 88.0 0.26 8.8E-06 42.4 2.8 29 349-377 4-32 (184)
297 1e4v_A Adenylate kinase; trans 88.0 0.23 7.9E-06 44.0 2.5 30 349-378 2-31 (214)
298 2xb4_A Adenylate kinase; ATP-b 87.9 0.27 9.1E-06 44.1 2.9 30 349-378 2-31 (223)
299 2i3b_A HCR-ntpase, human cance 87.9 0.25 8.7E-06 43.3 2.7 23 349-371 3-25 (189)
300 1ak2_A Adenylate kinase isoenz 87.9 0.26 9E-06 44.4 2.9 32 348-379 17-48 (233)
301 1zd8_A GTP:AMP phosphotransfer 87.9 0.31 1.1E-05 43.6 3.4 29 348-376 8-36 (227)
302 1tev_A UMP-CMP kinase; ploop, 87.9 0.28 9.5E-06 42.3 2.9 28 349-376 5-32 (196)
303 3ney_A 55 kDa erythrocyte memb 87.9 0.29 1E-05 43.3 3.1 28 345-373 18-45 (197)
304 2cvh_A DNA repair and recombin 87.9 0.27 9.1E-06 43.4 2.9 36 345-381 19-55 (220)
305 2qi9_C Vitamin B12 import ATP- 87.9 0.28 9.5E-06 45.1 3.1 32 349-380 28-61 (249)
306 1mv5_A LMRA, multidrug resista 87.8 0.29 9.8E-06 44.7 3.1 33 349-381 30-65 (243)
307 2pze_A Cystic fibrosis transme 87.7 0.29 9.9E-06 44.3 3.1 28 345-373 33-60 (229)
308 2pt5_A Shikimate kinase, SK; a 87.7 0.28 9.5E-06 41.4 2.7 28 349-376 2-29 (168)
309 2vli_A Antibiotic resistance p 87.7 0.27 9.3E-06 42.0 2.7 28 349-376 7-34 (183)
310 2cdn_A Adenylate kinase; phosp 87.6 0.26 8.9E-06 43.1 2.6 30 348-377 21-50 (201)
311 2ixe_A Antigen peptide transpo 87.6 0.3 1E-05 45.5 3.1 33 349-381 47-82 (271)
312 1ji0_A ABC transporter; ATP bi 87.5 0.31 1E-05 44.5 3.1 33 349-381 34-69 (240)
313 2olj_A Amino acid ABC transpor 87.4 0.3 1E-05 45.3 3.1 36 345-381 49-87 (263)
314 2aka_B Dynamin-1; fusion prote 87.4 0.27 9.1E-06 45.8 2.7 23 347-369 26-48 (299)
315 2z43_A DNA repair and recombin 87.4 0.44 1.5E-05 45.4 4.3 37 345-382 106-152 (324)
316 2bwj_A Adenylate kinase 5; pho 87.4 0.3 1E-05 42.4 2.8 28 349-376 14-41 (199)
317 1w5s_A Origin recognition comp 87.3 0.53 1.8E-05 45.8 4.9 49 314-371 22-76 (412)
318 2v9p_A Replication protein E1; 87.3 0.27 9.2E-06 46.7 2.6 23 349-371 128-150 (305)
319 1qf9_A UMP/CMP kinase, protein 87.3 0.31 1.1E-05 41.9 2.9 28 349-376 8-35 (194)
320 4e22_A Cytidylate kinase; P-lo 87.3 0.37 1.3E-05 44.1 3.5 32 349-380 29-60 (252)
321 2nq2_C Hypothetical ABC transp 87.2 0.32 1.1E-05 44.8 3.0 28 345-373 30-57 (253)
322 2yz2_A Putative ABC transporte 87.2 0.32 1.1E-05 45.1 3.1 32 349-380 35-69 (266)
323 1vpl_A ABC transporter, ATP-bi 87.2 0.32 1.1E-05 44.9 3.1 36 345-381 40-78 (256)
324 2hf9_A Probable hydrogenase ni 87.1 0.32 1.1E-05 43.2 2.9 22 348-369 39-60 (226)
325 2ghi_A Transport protein; mult 87.0 0.34 1.1E-05 44.8 3.1 32 349-380 48-81 (260)
326 2qag_B Septin-6, protein NEDD5 86.9 0.28 9.7E-06 48.8 2.6 24 348-371 43-66 (427)
327 2ihy_A ABC transporter, ATP-bi 86.9 0.34 1.2E-05 45.3 3.1 36 345-381 46-84 (279)
328 2ohf_A Protein OLA1, GTP-bindi 86.9 0.34 1.2E-05 47.7 3.2 28 343-370 18-45 (396)
329 3asz_A Uridine kinase; cytidin 86.9 0.3 1E-05 43.0 2.6 29 349-377 8-37 (211)
330 3be4_A Adenylate kinase; malar 86.9 0.33 1.1E-05 43.2 2.9 31 348-378 6-36 (217)
331 1ukz_A Uridylate kinase; trans 86.9 0.42 1.4E-05 41.7 3.5 31 348-378 16-46 (203)
332 2pez_A Bifunctional 3'-phospho 86.8 0.5 1.7E-05 40.4 3.9 23 349-371 7-29 (179)
333 2yvu_A Probable adenylyl-sulfa 86.8 0.33 1.1E-05 41.8 2.8 25 348-372 14-38 (186)
334 2r8r_A Sensor protein; KDPD, P 86.8 0.21 7.3E-06 45.3 1.5 30 344-373 3-33 (228)
335 2fna_A Conserved hypothetical 86.8 0.4 1.4E-05 45.4 3.6 53 313-381 12-65 (357)
336 1mky_A Probable GTP-binding pr 86.8 0.33 1.1E-05 48.4 3.1 53 318-371 152-204 (439)
337 1jjv_A Dephospho-COA kinase; P 86.8 0.34 1.2E-05 42.5 2.9 22 349-370 4-25 (206)
338 4g1u_C Hemin import ATP-bindin 86.7 0.35 1.2E-05 44.9 3.0 33 349-381 39-74 (266)
339 3b85_A Phosphate starvation-in 86.7 0.23 8E-06 44.3 1.8 21 350-370 25-45 (208)
340 3sr0_A Adenylate kinase; phosp 86.7 0.36 1.2E-05 43.0 3.0 31 349-379 2-32 (206)
341 3nwj_A ATSK2; P loop, shikimat 86.6 0.35 1.2E-05 44.4 3.0 32 349-380 50-81 (250)
342 1nij_A Hypothetical protein YJ 86.6 0.69 2.4E-05 43.9 5.1 22 350-371 7-28 (318)
343 2zr9_A Protein RECA, recombina 86.5 0.53 1.8E-05 45.5 4.3 37 345-382 60-100 (349)
344 3lnc_A Guanylate kinase, GMP k 86.5 0.25 8.4E-06 44.4 1.8 25 349-373 29-54 (231)
345 2pt7_A CAG-ALFA; ATPase, prote 86.5 0.38 1.3E-05 46.1 3.2 32 349-380 173-207 (330)
346 3tlx_A Adenylate kinase 2; str 86.4 0.36 1.2E-05 43.9 2.9 32 348-379 30-61 (243)
347 3o47_A ADP-ribosylation factor 86.4 0.33 1.1E-05 46.4 2.7 25 345-369 163-187 (329)
348 2pjz_A Hypothetical protein ST 86.3 0.43 1.5E-05 44.2 3.4 32 349-380 32-65 (263)
349 2i1q_A DNA repair and recombin 86.1 0.48 1.7E-05 44.9 3.8 37 345-382 97-153 (322)
350 2plr_A DTMP kinase, probable t 86.1 0.37 1.3E-05 42.1 2.8 23 349-371 6-28 (213)
351 4akg_A Glutathione S-transfera 86.1 0.2 7E-06 60.5 1.3 63 348-420 646-708 (2695)
352 2qtf_A Protein HFLX, GTP-bindi 86.1 0.36 1.2E-05 47.0 2.9 29 343-371 174-203 (364)
353 3l0i_B RAS-related protein RAB 86.1 0.13 4.6E-06 44.7 -0.2 23 346-368 32-54 (199)
354 3r20_A Cytidylate kinase; stru 86.1 0.39 1.3E-05 43.7 2.9 34 347-380 9-42 (233)
355 1svm_A Large T antigen; AAA+ f 86.0 0.4 1.4E-05 46.9 3.2 27 349-375 171-197 (377)
356 1wf3_A GTP-binding protein; GT 85.9 0.36 1.2E-05 45.6 2.8 21 349-369 9-29 (301)
357 1cr0_A DNA primase/helicase; R 85.9 0.37 1.3E-05 45.0 2.8 36 345-381 34-74 (296)
358 2qag_A Septin-2, protein NEDD5 85.9 0.32 1.1E-05 47.2 2.4 22 347-368 37-58 (361)
359 2zts_A Putative uncharacterize 85.8 0.49 1.7E-05 42.4 3.5 37 345-382 29-70 (251)
360 3def_A T7I23.11 protein; chlor 85.8 0.4 1.4E-05 44.1 2.9 24 346-369 35-58 (262)
361 1m7g_A Adenylylsulfate kinase; 85.8 0.36 1.2E-05 42.7 2.5 31 349-379 27-62 (211)
362 2wkq_A NPH1-1, RAS-related C3 85.6 0.41 1.4E-05 45.1 2.9 24 345-368 153-176 (332)
363 2ze6_A Isopentenyl transferase 85.6 0.4 1.4E-05 44.0 2.8 24 349-372 3-26 (253)
364 3kta_A Chromosome segregation 85.5 0.43 1.5E-05 40.8 2.8 23 350-372 29-51 (182)
365 1ega_A Protein (GTP-binding pr 85.5 0.41 1.4E-05 45.2 2.9 22 349-370 10-31 (301)
366 1ltq_A Polynucleotide kinase; 85.3 0.56 1.9E-05 43.7 3.8 30 349-378 4-33 (301)
367 1zak_A Adenylate kinase; ATP:A 85.3 0.42 1.5E-05 42.5 2.8 26 348-373 6-31 (222)
368 2bbs_A Cystic fibrosis transme 85.2 0.45 1.5E-05 44.7 3.0 25 349-373 66-90 (290)
369 1lw7_A Transcriptional regulat 85.1 0.44 1.5E-05 46.2 2.9 25 349-373 172-196 (365)
370 2pbr_A DTMP kinase, thymidylat 85.0 0.46 1.6E-05 40.8 2.8 23 349-371 2-24 (195)
371 1jal_A YCHF protein; nucleotid 85.0 0.44 1.5E-05 46.3 2.9 23 348-370 3-25 (363)
372 3a43_A HYPD, hydrogenase nicke 84.9 2.2 7.4E-05 35.4 6.7 54 141-199 63-128 (139)
373 1a5t_A Delta prime, HOLB; zinc 84.9 0.44 1.5E-05 45.5 2.8 21 350-370 27-47 (334)
374 2d2e_A SUFC protein; ABC-ATPas 84.8 0.48 1.6E-05 43.4 3.0 36 345-381 28-68 (250)
375 1z47_A CYSA, putative ABC-tran 84.6 0.53 1.8E-05 45.7 3.2 36 345-381 40-78 (355)
376 3c5h_A Glucocorticoid receptor 84.6 0.64 2.2E-05 42.5 3.7 25 345-369 17-50 (255)
377 2gza_A Type IV secretion syste 84.5 0.51 1.7E-05 45.8 3.1 31 349-379 177-210 (361)
378 2kdx_A HYPA, hydrogenase/ureas 84.5 1.3 4.6E-05 35.6 5.1 48 134-195 59-107 (119)
379 2yyz_A Sugar ABC transporter, 84.5 0.54 1.8E-05 45.7 3.2 36 345-381 28-66 (359)
380 4ag6_A VIRB4 ATPase, type IV s 84.5 0.53 1.8E-05 46.0 3.3 26 345-370 33-58 (392)
381 1nlf_A Regulatory protein REPA 84.4 0.48 1.6E-05 43.9 2.8 24 345-369 29-52 (279)
382 3geh_A MNME, tRNA modification 84.4 0.36 1.2E-05 48.6 2.0 27 343-369 220-246 (462)
383 2eyu_A Twitching motility prot 84.4 0.47 1.6E-05 43.9 2.7 32 349-380 27-62 (261)
384 2zu0_C Probable ATP-dependent 84.4 0.51 1.7E-05 43.7 2.9 36 345-381 45-85 (267)
385 2oap_1 GSPE-2, type II secreti 84.4 0.55 1.9E-05 47.9 3.4 25 349-373 262-286 (511)
386 2hjg_A GTP-binding protein ENG 84.4 0.97 3.3E-05 44.9 5.2 24 346-369 174-197 (436)
387 3umf_A Adenylate kinase; rossm 84.3 0.46 1.6E-05 42.7 2.5 25 349-373 31-55 (217)
388 3d31_A Sulfate/molybdate ABC t 84.2 0.51 1.7E-05 45.6 2.9 33 349-381 28-63 (348)
389 2wwf_A Thymidilate kinase, put 84.2 0.51 1.7E-05 41.3 2.7 23 348-370 11-33 (212)
390 2dby_A GTP-binding protein; GD 84.2 0.49 1.7E-05 46.2 2.8 23 348-370 2-24 (368)
391 3a4m_A L-seryl-tRNA(SEC) kinas 84.2 0.5 1.7E-05 43.4 2.8 22 349-370 6-27 (260)
392 2wsm_A Hydrogenase expression/ 84.2 0.5 1.7E-05 41.7 2.7 22 348-369 31-52 (221)
393 2it1_A 362AA long hypothetical 84.2 0.56 1.9E-05 45.6 3.2 36 345-381 28-66 (362)
394 1ex7_A Guanylate kinase; subst 84.2 0.64 2.2E-05 40.7 3.3 26 350-375 4-29 (186)
395 3dpu_A RAB family protein; roc 84.1 0.49 1.7E-05 48.4 2.9 26 344-369 38-63 (535)
396 3cnl_A YLQF, putative uncharac 84.1 1.1 3.6E-05 41.5 4.9 22 348-369 100-121 (262)
397 2z0h_A DTMP kinase, thymidylat 83.9 0.66 2.3E-05 40.0 3.3 22 350-371 3-24 (197)
398 1g29_1 MALK, maltose transport 83.8 0.59 2E-05 45.6 3.2 35 345-380 28-65 (372)
399 2v54_A DTMP kinase, thymidylat 83.8 0.55 1.9E-05 40.8 2.8 24 348-371 5-28 (204)
400 3iev_A GTP-binding protein ERA 83.8 0.76 2.6E-05 43.4 3.9 21 349-369 12-32 (308)
401 1u0l_A Probable GTPase ENGC; p 83.8 0.55 1.9E-05 44.3 2.9 24 349-372 171-194 (301)
402 2e87_A Hypothetical protein PH 83.8 0.52 1.8E-05 45.5 2.8 27 345-371 165-191 (357)
403 1v43_A Sugar-binding transport 83.8 0.6 2E-05 45.6 3.2 33 349-381 39-74 (372)
404 1q3t_A Cytidylate kinase; nucl 83.7 0.59 2E-05 42.1 3.0 33 348-380 17-49 (236)
405 3rlf_A Maltose/maltodextrin im 83.7 0.61 2.1E-05 45.7 3.2 35 345-380 28-65 (381)
406 3fvq_A Fe(3+) IONS import ATP- 83.7 0.6 2E-05 45.3 3.1 35 345-380 29-66 (359)
407 1uf9_A TT1252 protein; P-loop, 83.4 0.61 2.1E-05 40.4 2.9 23 348-370 9-31 (203)
408 3ake_A Cytidylate kinase; CMP 83.4 0.55 1.9E-05 40.9 2.6 31 349-379 4-34 (208)
409 1jwy_B Dynamin A GTPase domain 83.3 0.56 1.9E-05 44.0 2.8 27 348-374 25-53 (315)
410 1ni3_A YCHF GTPase, YCHF GTP-b 83.3 0.59 2E-05 46.0 2.9 27 343-369 16-42 (392)
411 1nn5_A Similar to deoxythymidy 83.3 0.58 2E-05 41.0 2.7 23 348-370 10-32 (215)
412 3gee_A MNME, tRNA modification 83.2 0.41 1.4E-05 48.4 1.9 28 342-369 228-255 (476)
413 2ga8_A Hypothetical 39.9 kDa p 82.9 0.6 2E-05 45.2 2.8 25 348-372 25-49 (359)
414 3upu_A ATP-dependent DNA helic 82.8 0.63 2.1E-05 46.6 3.0 23 349-371 47-69 (459)
415 2obl_A ESCN; ATPase, hydrolase 82.8 0.74 2.5E-05 44.5 3.4 24 350-373 74-97 (347)
416 3lvq_E ARF-GAP with SH3 domain 82.8 0.61 2.1E-05 47.1 2.9 25 345-369 320-344 (497)
417 1oxx_K GLCV, glucose, ABC tran 82.6 0.52 1.8E-05 45.7 2.3 35 345-380 30-67 (353)
418 1udx_A The GTP-binding protein 82.5 0.51 1.7E-05 46.8 2.2 25 348-372 158-182 (416)
419 1wxq_A GTP-binding protein; st 82.4 0.63 2.1E-05 45.8 2.8 23 348-370 1-23 (397)
420 3jvv_A Twitching mobility prot 82.3 0.44 1.5E-05 46.2 1.6 24 349-372 125-148 (356)
421 3aez_A Pantothenate kinase; tr 82.1 0.64 2.2E-05 44.2 2.6 25 348-372 91-115 (312)
422 1tq4_A IIGP1, interferon-induc 82.0 0.73 2.5E-05 45.6 3.1 25 348-372 70-94 (413)
423 1rz3_A Hypothetical protein rb 81.9 0.67 2.3E-05 40.6 2.6 24 348-371 23-46 (201)
424 2rcn_A Probable GTPase ENGC; Y 81.9 0.77 2.6E-05 44.5 3.2 24 349-372 217-240 (358)
425 2h92_A Cytidylate kinase; ross 81.9 0.94 3.2E-05 39.9 3.6 33 348-380 4-36 (219)
426 3nh6_A ATP-binding cassette SU 81.9 0.69 2.4E-05 43.8 2.8 34 349-382 82-118 (306)
427 1bif_A 6-phosphofructo-2-kinas 81.8 0.7 2.4E-05 46.4 3.0 24 347-370 39-62 (469)
428 2dpy_A FLII, flagellum-specifi 81.7 0.83 2.8E-05 45.6 3.4 25 349-373 159-183 (438)
429 1f2t_A RAD50 ABC-ATPase; DNA d 81.5 0.75 2.6E-05 38.5 2.6 20 350-369 26-45 (149)
430 3gd7_A Fusion complex of cysti 81.5 0.68 2.3E-05 45.5 2.6 33 349-381 49-83 (390)
431 2yv5_A YJEQ protein; hydrolase 81.4 0.84 2.9E-05 43.0 3.2 22 350-372 168-189 (302)
432 2ewv_A Twitching motility prot 81.3 0.5 1.7E-05 46.1 1.6 24 349-372 138-161 (372)
433 2qm8_A GTPase/ATPase; G protei 81.2 0.81 2.8E-05 43.9 3.0 24 348-371 56-79 (337)
434 3tui_C Methionine import ATP-b 81.2 0.86 3E-05 44.3 3.2 36 345-381 53-91 (366)
435 2gno_A DNA polymerase III, gam 81.1 1.2 4E-05 42.1 4.1 22 348-369 19-40 (305)
436 1vht_A Dephospho-COA kinase; s 81.0 1.1 3.9E-05 39.4 3.8 23 348-370 5-27 (218)
437 2jeo_A Uridine-cytidine kinase 80.8 0.79 2.7E-05 41.5 2.7 23 349-371 27-49 (245)
438 2x2e_A Dynamin-1; nitration, h 80.5 0.63 2.1E-05 44.9 2.0 27 348-374 32-60 (353)
439 2qmh_A HPR kinase/phosphorylas 80.5 1.2 4E-05 39.6 3.5 25 348-372 35-59 (205)
440 2www_A Methylmalonic aciduria 80.4 0.89 3E-05 43.8 3.0 24 347-370 74-97 (349)
441 1sq5_A Pantothenate kinase; P- 80.4 0.7 2.4E-05 43.6 2.2 24 349-372 82-105 (308)
442 2npi_A Protein CLP1; CLP1-PCF1 80.2 0.66 2.3E-05 46.6 2.1 31 349-379 140-175 (460)
443 2f1r_A Molybdopterin-guanine d 80.1 0.62 2.1E-05 40.1 1.6 24 349-372 4-27 (171)
444 1p9r_A General secretion pathw 80.0 0.76 2.6E-05 45.6 2.4 33 349-381 169-204 (418)
445 4dcu_A GTP-binding protein ENG 79.9 1.8 6.2E-05 43.1 5.3 25 345-369 193-217 (456)
446 2hjg_A GTP-binding protein ENG 79.7 0.8 2.7E-05 45.5 2.5 22 348-369 4-25 (436)
447 1mky_A Probable GTP-binding pr 79.3 0.93 3.2E-05 45.1 2.9 21 349-369 3-23 (439)
448 3r7w_B Gtpase2, GTP-binding pr 79.2 0.9 3.1E-05 43.5 2.6 24 349-372 1-25 (331)
449 2vp4_A Deoxynucleoside kinase; 79.2 1.1 3.7E-05 40.2 3.0 35 344-380 18-52 (230)
450 4dcu_A GTP-binding protein ENG 79.0 0.94 3.2E-05 45.3 2.8 23 347-369 23-45 (456)
451 1gtv_A TMK, thymidylate kinase 78.9 0.58 2E-05 41.0 1.1 24 349-372 2-25 (214)
452 1xzp_A Probable tRNA modificat 78.8 0.39 1.3E-05 48.6 -0.1 27 343-369 239-265 (482)
453 1t9h_A YLOQ, probable GTPase E 78.7 0.52 1.8E-05 44.7 0.8 23 349-371 175-197 (307)
454 4a9a_A Ribosome-interacting GT 78.6 1 3.5E-05 44.0 2.8 28 343-370 68-95 (376)
455 1lnz_A SPO0B-associated GTP-bi 78.6 0.87 3E-05 43.8 2.3 24 349-372 160-183 (342)
456 1rj9_A FTSY, signal recognitio 78.1 1.1 3.6E-05 42.5 2.7 37 345-382 101-140 (304)
457 1u94_A RECA protein, recombina 78.1 1.5 5.3E-05 42.3 3.9 37 345-382 62-102 (356)
458 3crm_A TRNA delta(2)-isopenten 78.1 1.6 5.6E-05 41.6 4.0 30 349-379 7-36 (323)
459 2j69_A Bacterial dynamin-like 77.7 1.1 3.7E-05 47.5 2.9 24 345-368 67-90 (695)
460 3tqc_A Pantothenate kinase; bi 77.6 1.6 5.6E-05 41.5 3.9 84 280-372 33-117 (321)
461 3e70_C DPA, signal recognition 77.6 1.1 3.8E-05 42.9 2.7 36 345-381 128-166 (328)
462 3b9q_A Chloroplast SRP recepto 77.5 1.1 3.8E-05 42.3 2.6 37 345-382 99-138 (302)
463 3e1s_A Exodeoxyribonuclease V, 77.3 1.1 3.6E-05 46.4 2.6 22 349-370 206-227 (574)
464 2grj_A Dephospho-COA kinase; T 77.2 1.3 4.4E-05 38.8 2.8 26 347-372 12-37 (192)
465 4eaq_A DTMP kinase, thymidylat 77.2 1.2 4.2E-05 40.0 2.8 25 348-372 27-51 (229)
466 3sjy_A Translation initiation 77.1 1.3 4.5E-05 43.5 3.1 25 345-369 6-30 (403)
467 3szr_A Interferon-induced GTP- 77.0 0.92 3.1E-05 47.3 2.1 24 350-373 48-72 (608)
468 1yqt_A RNAse L inhibitor; ATP- 77.0 1.3 4.5E-05 45.4 3.2 28 345-373 46-73 (538)
469 1w36_D RECD, exodeoxyribonucle 76.9 2.5 8.6E-05 43.9 5.4 35 319-368 151-185 (608)
470 1q57_A DNA primase/helicase; d 76.6 1.8 6.1E-05 43.8 4.1 38 344-382 240-282 (503)
471 1zcb_A G alpha I/13; GTP-bindi 76.5 1.2 4.2E-05 43.2 2.7 26 343-368 29-54 (362)
472 3tqf_A HPR(Ser) kinase; transf 76.2 1.4 4.8E-05 38.2 2.7 22 348-369 17-38 (181)
473 2ius_A DNA translocase FTSK; n 76.1 1.3 4.4E-05 45.1 2.8 25 344-368 164-188 (512)
474 3qks_A DNA double-strand break 76.0 1.5 5E-05 38.7 2.9 21 350-370 26-46 (203)
475 1uj2_A Uridine-cytidine kinase 75.6 1.4 4.9E-05 39.9 2.8 26 347-372 22-47 (252)
476 1e9r_A Conjugal transfer prote 75.5 1.4 4.9E-05 43.5 3.0 23 345-367 51-73 (437)
477 2f6r_A COA synthase, bifunctio 75.0 1.4 4.7E-05 41.0 2.6 23 348-370 76-98 (281)
478 3zvl_A Bifunctional polynucleo 75.0 1.5 5E-05 43.4 2.8 24 348-371 259-282 (416)
479 3ec1_A YQEH GTPase; atnos1, at 75.0 2.3 7.7E-05 41.3 4.2 23 348-370 163-185 (369)
480 2b8t_A Thymidine kinase; deoxy 74.9 1.6 5.4E-05 39.3 2.8 38 342-380 8-49 (223)
481 3bh0_A DNAB-like replicative h 74.8 1.5 5.3E-05 41.4 2.9 37 345-382 67-107 (315)
482 2yhs_A FTSY, cell division pro 74.5 1.4 4.9E-05 44.5 2.7 35 345-380 292-329 (503)
483 3cr8_A Sulfate adenylyltranfer 74.3 1.4 4.6E-05 45.4 2.4 25 348-372 370-394 (552)
484 1c9k_A COBU, adenosylcobinamid 74.0 2.9 0.0001 36.2 4.2 29 350-378 2-30 (180)
485 3p32_A Probable GTPase RV1496/ 73.9 1.8 6.3E-05 41.6 3.2 22 348-369 80-101 (355)
486 3j16_B RLI1P; ribosome recycli 73.7 2.1 7.1E-05 44.6 3.7 24 350-373 381-404 (608)
487 2og2_A Putative signal recogni 73.4 1.6 5.6E-05 42.2 2.6 37 345-382 156-195 (359)
488 3euj_A Chromosome partition pr 73.4 1.4 4.9E-05 44.4 2.4 33 348-380 30-65 (483)
489 3ice_A Transcription terminati 72.9 1.8 6E-05 42.6 2.7 23 349-371 176-198 (422)
490 2qpt_A EH domain-containing pr 72.7 1.8 6.1E-05 44.5 2.9 25 345-369 63-87 (550)
491 1odf_A YGR205W, hypothetical 3 72.4 1.8 6.2E-05 40.5 2.7 25 348-372 32-56 (290)
492 1np6_A Molybdopterin-guanine d 72.4 2 6.9E-05 36.9 2.8 22 349-370 8-29 (174)
493 3h2y_A GTPase family protein; 72.2 2.3 8E-05 41.2 3.5 23 348-370 161-183 (368)
494 3d3q_A TRNA delta(2)-isopenten 71.8 3 0.0001 40.0 4.1 29 349-378 9-37 (340)
495 1nnx_A Protein YGIW; structura 71.8 8.5 0.00029 30.4 6.0 43 221-273 63-107 (109)
496 3bk7_A ABC transporter ATP-bin 71.7 2 6.9E-05 44.6 3.1 23 350-372 120-142 (607)
497 2r6a_A DNAB helicase, replicat 71.5 2 6.7E-05 42.9 2.8 37 345-382 202-243 (454)
498 2o5v_A DNA replication and rep 71.5 1.6 5.4E-05 42.3 2.1 24 349-372 28-51 (359)
499 1d2e_A Elongation factor TU (E 71.4 2.1 7.1E-05 41.9 2.9 24 347-370 3-26 (397)
500 3ohm_A Guanine nucleotide-bind 71.3 1.9 6.6E-05 41.2 2.6 29 342-370 2-30 (327)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-72 Score=594.07 Aligned_cols=386 Identities=31% Similarity=0.515 Sum_probs=340.2
Q ss_pred HHHHHHHHHHHHH--------hHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHHHHH
Q 014661 8 AHLKALAEFVIRH--------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKI 79 (420)
Q Consensus 8 ~~i~~f~~Fl~~~--------y~~~i~~~~~~~~~~~~~sl~Id~~dL~~~~p~La~~l~~~P~~~l~~~e~ai~~~~~~ 79 (420)
|..++|++||++| |.++|++|+.. .+++|.||++||.+|+|+||++|+++|.+++++|++|+++++..
T Consensus 3 ~~~~~f~~Fl~~~~~~~~~~~y~~~i~~~~~~----~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~ 78 (595)
T 3f9v_A 3 DYRDVFIEFLTTFKGNNNQNKYIERINELVAY----RKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQ 78 (595)
T ss_dssp CHHHHHHHHHHHCCTTTTSCTTHHHHHHHHHH----TCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCChhHHHHHHHHHHc----CCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Confidence 5678899999998 99999999865 47899999999999999999999999999999999999998663
Q ss_pred HhhccchhhhhccceeEEEEEeecCCCCCCCCCCcccccccccccccEEEEEEEEEEecceeEEEEEEEEEecC--CCce
Q 014661 80 VFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRK--CKHM 157 (420)
Q Consensus 80 ~~~~~~~~~~~~~~~~i~vri~~~~~p~~~p~~~~~~~~l~~~~igkLV~v~G~V~r~s~vk~~~~~~~f~C~~--C~~~ 157 (420)
.. +.. ....+.+|||+. ++| ...++|+|++.++||||+|+|+|+|+|.|+|++.+++|.|.+ ||+.
T Consensus 79 ~~---~~~--~~~~~~~~v~~~------~~~-~~~~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~ 146 (595)
T 3f9v_A 79 LD---PTY--QRDIEKVHVRIV------GIP-RVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQE 146 (595)
T ss_dssp HC---GGG--TTTCCCCCCCEE------CCS-CEECGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCB
T ss_pred hc---hhh--hhccceEEEEEe------CCC-CCCChhhcchhhCCcEEEEEEEEEEecCEEEEEEEEEEEecCCCCCCE
Confidence 22 111 112345888887 455 356799999999999999999999999999999999999999 9998
Q ss_pred eeeccccccccceecCCCCCCCCCCCCCCC-ceEEecceeeEeeeeEEEEeecccccCCCCcceEEEEEEecCccCceec
Q 014661 158 FPVYPELETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKA 236 (420)
Q Consensus 158 ~~~~~~~~~~~~~~~P~~C~~~~~~~C~~~-~f~~~~~~s~~~d~Q~IkiQE~~e~~~~g~~pr~i~v~L~~dLv~~~~p 236 (420)
+.+.......+.+..|..||+ |+++ +|.++.+.|.|+|||+|+|||.|+.+|.|++||+++|+|++||||.|+|
T Consensus 147 ~~~~~~~~~~~~~~~p~~C~~-----C~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~p 221 (595)
T 3f9v_A 147 FEWPEDEEMPEVLEMPTICPK-----CGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARP 221 (595)
T ss_dssp CCSSCSSCCCSSCCCCSSCTT-----TCCCSEEECCSTTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCS
T ss_pred EEEEeccccCCcccCCCcCCC-----CCCCCceEEeccCceeeeeEEEEEEeccccCCCCCCCceEEEEEeccccccccc
Confidence 764421124467889999984 8876 7999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEeeecCCC-cCcccccceEEEEeeEEEccCccCCCCCCHHHHHHHHHHHHhhcCCCccchhhhhhccCCc
Q 014661 237 GDDVIVTGILTAKWSPDL-KDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQ 315 (420)
Q Consensus 237 Gd~V~v~GIl~~~~~~~~-~~~~~~~~~~i~a~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~siaP~ 315 (420)
||+|.|+||++..|.... ++.++.|++|++|++|+..++......+++++++.+.++++ ++ ..++.|.++++|+
T Consensus 222 Gd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~t~~~~~~i~~~~~----~~-~~~~~l~~~l~~~ 296 (595)
T 3f9v_A 222 GDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQKVLDEVIISEEDEKKIKDLAK----DP-WIRDRIISSIAPS 296 (595)
T ss_dssp SCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEEEEEECCCCCCCCCCTTSTHHHHHTTSS----TT-TGGGTHHHHTSST
T ss_pred CCEEEEEEEEEecccccccCCCcceEEEEEEEEeecccccccccCCCCHHHHHHHHHHhh----Cc-HHHHHHHHhhcch
Confidence 999999999999887543 23467899999999999887766677889888888876653 33 2678999999999
Q ss_pred ccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEEEeccccccCCceeeEEeeC
Q 014661 316 VFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG 395 (420)
Q Consensus 316 i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~~ss~~gLt~~~~r~~ 395 (420)
|+|++.+|+|++++|+||..+..++ .++|+++|+||+|+||||||+|++++++.+||++|++|.+++.+||++++.++.
T Consensus 297 I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~ 375 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK 375 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGG
T ss_pred hcChHHHHHHHHHHHhCCCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecc
Confidence 9999999999999999999888777 899999999999999999999999999999999999999999999999998875
Q ss_pred --CceeeccceeeecCCceEeeecccC
Q 014661 396 --GEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 396 --g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
|+|.+++|++++||+|||||||||+
T Consensus 376 ~~g~~~~~~G~l~~A~~gil~IDEid~ 402 (595)
T 3f9v_A 376 GTGEYYLEAGALVLADGGIAVIDEIDK 402 (595)
T ss_dssp GTSSCSEEECHHHHHSSSEECCTTTTC
T ss_pred ccccccccCCeeEecCCCcEEeehhhh
Confidence 8999999999999999999999996
No 2
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=100.00 E-value=7.9e-53 Score=403.50 Aligned_cols=266 Identities=24% Similarity=0.358 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHH-hHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhccc
Q 014661 7 PAHLKALAEFVIRH-HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIVFDELK 85 (420)
Q Consensus 7 ~~~i~~f~~Fl~~~-y~~~i~~~~~~~~~~~~~sl~Id~~dL~~~~p~La~~l~~~P~~~l~~~e~ai~~~~~~~~~~~~ 85 (420)
.+..++|.+||++| |+++|++|+.+. ..+++|.||++||.+|+|+||++|+++|.+++++|++|++++. +
T Consensus 12 ~~~~~~f~~Fl~~~~Y~~~i~~~~~~~--~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~-------~ 82 (279)
T 1ltl_A 12 SKTLTKFEEFFSLQDYKDRVFEAIEKY--PNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNID-------R 82 (279)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHT--TSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTC-------T
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhhC--CCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHhc-------c
Confidence 34456799999998 999999998221 1478999999999999999999999999999999999987642 1
Q ss_pred hhhhhccceeEEEEEeecCCCCCCCCCCcccccccccccccEEEEEEEEEEecceeEEEEEEEEEecCCCceeeeccccc
Q 014661 86 SCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPVYPELE 165 (420)
Q Consensus 86 ~~~~~~~~~~i~vri~~~~~p~~~p~~~~~~~~l~~~~igkLV~v~G~V~r~s~vk~~~~~~~f~C~~C~~~~~~~~~~~ 165 (420)
. .... .+|||+. ++| ...++|+|++.++||||+|+|+|+|+|.|+|++++++|.|..||+.+.+.+
T Consensus 83 -~--~~~~-~~~vr~~------~~~-~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~--- 148 (279)
T 1ltl_A 83 -L--RKNV-DLNIRFS------GIS-NVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQ--- 148 (279)
T ss_dssp -T--CCCC-CCEEEEE------CCS-CBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEEC---
T ss_pred -c--cCCe-eEEEEEE------CCC-CCCCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEe---
Confidence 1 1112 6899998 445 356899999999999999999999999999999999999999998865543
Q ss_pred cccceecCCCCCCCCCCCCCCCceEEecceeeEeeeeEEEEeecccccCCCCcceEEEEEEecCccCceecCCeEEEEEE
Q 014661 166 TRNSIVLPSHCPSQRSKPCEGTNFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDVIVTGI 245 (420)
Q Consensus 166 ~~~~~~~P~~C~~~~~~~C~~~~f~~~~~~s~~~d~Q~IkiQE~~e~~~~g~~pr~i~v~L~~dLv~~~~pGd~V~v~GI 245 (420)
..+.+..|..||+ |++++|.++.+.|.|+|||+|||||.|+.+|.|++||+++|+|++||||.|+|||+|.||||
T Consensus 149 ~~~~~~~P~~Cp~-----C~~~~f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI 223 (279)
T 1ltl_A 149 STNMITEPSLCSE-----CGGRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGT 223 (279)
T ss_dssp SSSSCCCCSCCTT-----TCCCCEEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEE
T ss_pred cCCcccCCCcCCC-----CCCCCcEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccccCccCCCCEEEEEEE
Confidence 2467889999984 98888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecCCCcCcccccceEEEEeeEEEccCccCCCCCCHHHHHHHHHHHHhhcCCCccchhhhh
Q 014661 246 LTAKWSPDLKDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAIL 309 (420)
Q Consensus 246 l~~~~~~~~~~~~~~~~~~i~a~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 309 (420)
++..|. +..+.|++||+||||+..++...+..+|++|+++|++++++ | ++|++|+
T Consensus 224 ~~~~~~----~~~~~~~~~l~a~~I~~~~~~~~~~~~t~ed~~~i~~ls~~----~-~iy~~L~ 278 (279)
T 1ltl_A 224 LRTVRD----ERTKRFKNFIYGNYTEFLEQEFEELQISEEDEEKIKELAGD----P-NIYEKII 278 (279)
T ss_dssp EEEEEE----TTTTEEEEEEEEEECCBC------------------------------------
T ss_pred EEEeeC----CCCceEEEEEEEEEEEEecCccccCCCCHHHHHHHHHHhcC----C-CHHHHhh
Confidence 999873 34567999999999998776666678999999988877643 3 3667665
No 3
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.5e-51 Score=388.54 Aligned_cols=252 Identities=23% Similarity=0.363 Sum_probs=214.1
Q ss_pred CCChHHHHHHHHHHHHHH--------hHHHHHHhhcCCCCCCceeEEEechhhhccCHHHHHHHHhChHHHHHHHHHHHH
Q 014661 3 PENVPAHLKALAEFVIRH--------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAI 74 (420)
Q Consensus 3 ~~~~~~~i~~f~~Fl~~~--------y~~~i~~~~~~~~~~~~~sl~Id~~dL~~~~p~La~~l~~~P~~~l~~~e~ai~ 74 (420)
|.+..+..++|++||++| |+++|++++.. .+++|.||++||.+|+|+||++|+++|.+++++|++|++
T Consensus 4 ~~~~~~~~~~f~~Fl~~f~~~~~~~~Y~~~i~~~~~~----~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~ 79 (268)
T 2vl6_A 4 PSKQIDYRDVFIEFLTTFKGNNNQNKYIERINELVAY----RKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALY 79 (268)
T ss_dssp ---CCCHHHHHHHHHHHCCCSSSSCTTHHHHHHHHHT----TCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHc----CCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHH
Confidence 444447778899999997 89999999875 478999999999999999999999999999999999999
Q ss_pred HHHHHHhhccchhhhhccceeEEEEEeecCCCCCCCCCCcccccccccccccEEEEEEEEEEecceeEEEEEEEEEe--c
Q 014661 75 WAHKIVFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMC--R 152 (420)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~vri~~~~~p~~~p~~~~~~~~l~~~~igkLV~v~G~V~r~s~vk~~~~~~~f~C--~ 152 (420)
+++.... +.. ....+.+|||+. ++| ...++|+|++.++||||+|+|+|+|+|.|+|++.+++|.| .
T Consensus 80 ~~~~~~~---~~~--~~~~~~~~vr~~------~~~-~~~~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~ 147 (268)
T 2vl6_A 80 DHILQLD---PTY--QRDIEKVHVRIV------GIP-RVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHP 147 (268)
T ss_dssp HHHHTTC---GGG--TTTCSCCCEEEE------CCS-CEECGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECT
T ss_pred HHHHHhC---chh--hccCccEEEEEE------CCC-CCCccccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEECCCC
Confidence 8876322 111 123456899998 445 3568999999999999999999999999999999999999 9
Q ss_pred CCCceeeeccccccccceecCCCCCCCCCCCCCCC-ceEEecceeeEeeeeEEEEeecccccCCCCcceEEEEEEecCcc
Q 014661 153 KCKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLV 231 (420)
Q Consensus 153 ~C~~~~~~~~~~~~~~~~~~P~~C~~~~~~~C~~~-~f~~~~~~s~~~d~Q~IkiQE~~e~~~~g~~pr~i~v~L~~dLv 231 (420)
+||+.+.+.....+.+.+..|..|| .|+++ +|.++.+.|.|+|||+|||||.|+.+|.|++||+++|+|++|||
T Consensus 148 ~C~~~~~~~~~~~~~~~~~~P~~Cp-----~C~~~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLv 222 (268)
T 2vl6_A 148 DCMQEFEWPEDEEMPEVLEMPTICP-----KCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLV 222 (268)
T ss_dssp TCCCEEESSTTSCCCTTCCCCSBCT-----TTCCBCEEEECGGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGT
T ss_pred CCCCEEeeeecccCCCcccCCccCC-----CCCCCCCEEEecCccEEEeeEEEEEEeCCCCCCCCCCCcEEEEEEccCcc
Confidence 9999876441112456789999998 48887 59999999999999999999999999999999999999999999
Q ss_pred CceecCCeEEEEEEEEeeecCC-CcCcccccceEEEEeeEEEccC
Q 014661 232 DIVKAGDDVIVTGILTAKWSPD-LKDVRCDLDPVLIANHVRRTNE 275 (420)
Q Consensus 232 ~~~~pGd~V~v~GIl~~~~~~~-~~~~~~~~~~~i~a~~I~~~~~ 275 (420)
|.|+|||+|.||||++..|... .++.++.|++||+||||+..++
T Consensus 223 d~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 223 DSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp TSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred CcccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEecc
Confidence 9999999999999999998752 3356678999999999997653
No 4
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=4e-50 Score=402.07 Aligned_cols=226 Identities=25% Similarity=0.310 Sum_probs=198.4
Q ss_pred ccccccccceecCCCCCCCCCCCCCCCceEEecceeeEeeeeEEEEeecccccCCCCcceEEEEEEecCccC------ce
Q 014661 161 YPELETRNSIVLPSHCPSQRSKPCEGTNFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVD------IV 234 (420)
Q Consensus 161 ~~~~~~~~~~~~P~~C~~~~~~~C~~~~f~~~~~~s~~~d~Q~IkiQE~~e~~~~g~~pr~i~v~L~~dLv~------~~ 234 (420)
++.++.-.....|..||..+.++|-. .|. -.+.+.|.|+|+|||||.|+++|.|++||+++|+|++|||| +|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~-r~~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~ 155 (506)
T 3f8t_A 78 EPALRELVRTVAPDVEPRVRFRGLPH-RFR-RVERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRL 155 (506)
T ss_dssp HHHHHHHHHHHCTTSCCCEEEECCCG-GGS-SCSCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCC
T ss_pred cHHHHHHHHhhCCCCCcccccCCccc-ccc-hHhhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccc
Confidence 44445556677899999755455432 222 22345789999999999999999999999999999999999 99
Q ss_pred ecCCeEEEEEEEEeeecCCCcCcccccceEEEEeeEEEccCccCCCCCCHHHHHHHHHHHHhhcCCCccchhhhhhccCC
Q 014661 235 KAGDDVIVTGILTAKWSPDLKDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICP 314 (420)
Q Consensus 235 ~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~i~a~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~siaP 314 (420)
+|||+|.|+||++.. |++||||+. ++.+....+|+++++.|++++++ ..++.|++||||
T Consensus 156 ~pGd~V~v~GI~~~~--------------~l~a~~i~~-~~~~~~~~~t~ed~~~i~~l~~~------~~~~~l~~sIap 214 (506)
T 3f8t_A 156 GPGLRVEILGIVRSA--------------TLDALEVHK-KDPIPEVHPDPAELEEFRELADK------DPLTTFARAIAP 214 (506)
T ss_dssp CTTCEEEEEEEEETT--------------EEEEEEEEE-ECSSCCCCCCHHHHHHHHHHHHS------CHHHHHHHHHCC
T ss_pred cCCCEEEEEEEEEEe--------------EEEEEEEEE-cCccccCCCCHHHHHHHHHHHHH------HHHHHHHHHhcc
Confidence 999999999999853 899999998 44556778999999999998863 267899999999
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHH-hccCCcEEEEeccccccCCceeeEEe
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFA-AKLSNRSVITTGLGSTSAGLTVTAVK 393 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~-~~~~p~~v~~~G~~ss~~gLt~~~~r 393 (420)
|||++.+|+|++|+|+||..+ .||++||||+|+||| ||+|++++ ++++||++||+|.+++.+|||++ .|
T Consensus 215 -I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r 284 (506)
T 3f8t_A 215 -LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LK 284 (506)
T ss_dssp -STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EE
T ss_pred -cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE-EE
Confidence 999999999999999999764 899999999999999 99999999 99999999999999999999999 88
Q ss_pred eC-CceeeccceeeecCCceEeeecccC
Q 014661 394 DG-GEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 394 ~~-g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
+. | |.+++|+++|||+|+||||||++
T Consensus 285 ~~tG-~~~~~G~l~LAdgGvl~lDEIn~ 311 (506)
T 3f8t_A 285 EDRG-WALRAGAAVLADGGILAVDHLEG 311 (506)
T ss_dssp ESSS-EEEEECHHHHTTTSEEEEECCTT
T ss_pred cCCC-cccCCCeeEEcCCCeeehHhhhh
Confidence 76 7 99999999999999999999986
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.88 E-value=2.1e-09 Score=104.53 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=75.2
Q ss_pred hhhhhhccCCcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE-Eec-ccc
Q 014661 305 RNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI-TTG-LGS 382 (420)
Q Consensus 305 ~~~l~~siaP~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~-~~G-~~s 382 (420)
.+.+..++.+.|.|++.++.+++..+.+| -|+||.|+||||||+|++++++..+..++ +.. .+.
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--------------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~ 83 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICTG--------------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDL 83 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHHT--------------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHcC--------------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 35677888999999999999999999874 18999999999999999999988876654 332 223
Q ss_pred ccCCceeeEEeeC--CceeeccceeeecCCceEeeecccC
Q 014661 383 TSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 383 s~~gLt~~~~r~~--g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
+...++.....+. |.|.+.+|.+ .+||++|||+|+
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~ 120 (331)
T 2r44_A 84 LPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNR 120 (331)
T ss_dssp CHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGG
T ss_pred ChhhcCCceeecCCCCceEeccCcc---cccEEEEEcccc
Confidence 3344554444332 7787777776 379999999984
No 6
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.83 E-value=2.4e-09 Score=109.88 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=68.2
Q ss_pred hhhhhhccCCcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcE---EEEeccc
Q 014661 305 RNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS---VITTGLG 381 (420)
Q Consensus 305 ~~~l~~siaP~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~---v~~~G~~ 381 (420)
++.+.+++++.|+|++.++.++++++.+|. |+||.|+||||||.|++++++.++++ .+.....
T Consensus 13 ~~~l~~~l~~~ivGq~~~i~~l~~al~~~~--------------~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~ 78 (500)
T 3nbx_X 13 ISRLSSSLEKGLYERSHAIRLCLLAALSGE--------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF 78 (500)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHHHTC--------------EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCC--------------eeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence 356788999999999999999999998762 89999999999999999999988653 3333333
Q ss_pred cccCCceeeE----EeeCCcee-eccceeeecCCceEeeecccC
Q 014661 382 STSAGLTVTA----VKDGGEWM-LEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 382 ss~~gLt~~~----~r~~g~~~-leaGalvlad~Gv~ciDe~dK 420 (420)
++...|+... .+..|.+. ...|. ++..+|++|||+++
T Consensus 79 ~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 79 STPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWK 120 (500)
T ss_dssp CCHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGGG
T ss_pred CCHHHhcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHhh
Confidence 3333333211 11123332 23332 33466899999974
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.78 E-value=1.8e-09 Score=105.27 Aligned_cols=94 Identities=29% Similarity=0.320 Sum_probs=67.9
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEEEeccc-------------
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG------------- 381 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~~------------- 381 (420)
.|+|++.+|.++.+.++.+. .-|+||.|+||||||.|++++++.+++..+..+..
T Consensus 25 ~i~G~~~~~~~l~~~~~~~~------------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAVDPG------------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWA 92 (350)
T ss_dssp GSCSCHHHHHHHHHHHHCGG------------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTC
T ss_pred hccChHHHHHHHHHHhhCCC------------CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchh
Confidence 47899999999888877532 12799999999999999999999999866655421
Q ss_pred --------------------cccCCceeeEE-e---eCCceeeccceeeecCCceEeeecccC
Q 014661 382 --------------------STSAGLTVTAV-K---DGGEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 382 --------------------ss~~gLt~~~~-r---~~g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
.+...|..... + ..+.+.+.+|.+..|++|+++|||+|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~ 155 (350)
T 1g8p_A 93 TVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNL 155 (350)
T ss_dssp CCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGG
T ss_pred hhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhh
Confidence 11111221111 0 114467788999999999999999984
No 8
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.47 E-value=4.8e-08 Score=96.65 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=68.1
Q ss_pred hhhhccCCcccCCHHHHHHHHHHHhcCceeeCC------------------CCCcccCcccEEEEcCCCchhhHHHHHHh
Q 014661 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDA------------------SGTKVRGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 307 ~l~~siaP~i~G~~~~K~ailL~L~gg~~~~~~------------------~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
.+.+.+...|.|++.+|+++..++......... .+...++..|+||.|+||||||.+++.++
T Consensus 14 ~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHH
Confidence 345556667899999999999888532211000 00012356799999999999999999999
Q ss_pred ccCCcEEE-EeccccccCCceeeEEeeC--CceeeccceeeecCCceEeeecccC
Q 014661 369 KLSNRSVI-TTGLGSTSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 369 ~~~p~~v~-~~G~~ss~~gLt~~~~r~~--g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
+.+...++ ++....+..|+...-.+.. +.+.-..|.+..+.+||++|||+|+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 148 (376)
T 1um8_A 94 KHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDK 148 (376)
T ss_dssp HHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGG
T ss_pred HHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHH
Confidence 98865444 3433333334332211110 1111223556678999999999985
No 9
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.34 E-value=2.3e-07 Score=97.61 Aligned_cols=47 Identities=32% Similarity=0.393 Sum_probs=41.1
Q ss_pred CcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcE
Q 014661 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (420)
Q Consensus 314 P~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~ 374 (420)
..++|++.++..+-+.+-.| -|+||+|+||||||+|++.++.+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------------~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------------RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------------CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ceEECchhhHhhccccccCC--------------CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 46889999999999988765 189999999999999999999998743
No 10
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.28 E-value=1.7e-07 Score=89.50 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=69.0
Q ss_pred hhhhhccCCcccCCHHHHHHHHHHHhcCceeeC-CCCC-cccCcccEEEEcCCCchhhHHHHHHhccCCcE-EEEecccc
Q 014661 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVD-ASGT-KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS-VITTGLGS 382 (420)
Q Consensus 306 ~~l~~siaP~i~G~~~~K~ailL~L~gg~~~~~-~~g~-~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~-v~~~G~~s 382 (420)
+.+.+++.+.|+|++.+|+++..++.....+.. ..+. .-+..-|+||.|+||||||.+++++++..+.. +++++...
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 356777888999999999999988865221100 0000 01234589999999999999999998877543 44454433
Q ss_pred ccCCceeeEEeeC-Cce-eeccceeeec-CCceEeeecccC
Q 014661 383 TSAGLTVTAVKDG-GEW-MLEAGALVLA-DGGLCCIDEFDR 420 (420)
Q Consensus 383 s~~gLt~~~~r~~-g~~-~leaGalvla-d~Gv~ciDe~dK 420 (420)
+..|+...-.... .++ .-.+|++-.+ .+||++|||+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 87 TEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp SSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred ccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 3333321100000 000 0113444444 479999999985
No 11
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.11 E-value=1.2e-06 Score=74.62 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=43.3
Q ss_pred CcccEEEEcCCCchhhHHHHHHhccCCcEEEEeccccccCCceeeEEeeCCceeeccceeeecCCceEeeecccC
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~~ss~~gLt~~~~r~~g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
.+.||||.|+||||||.+.+++++.+++. +..-. +.++... .+ .-..|.+-.|++|+++|||+|.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~------~~~~v-~~~~~~~--~~-~~~~~~~~~a~~g~l~ldei~~ 87 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNA------QGEFV-YRELTPD--NA-PQLNDFIALAQGGTLVLSHPEH 87 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTT------TSCCE-EEECCTT--TS-SCHHHHHHHHTTSCEEEECGGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCcc------CCCEE-EECCCCC--cc-hhhhcHHHHcCCcEEEEcChHH
Confidence 34589999999999999999999987652 00000 1111100 11 1235667778999999999984
No 12
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.03 E-value=8.1e-07 Score=75.46 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=43.3
Q ss_pred cccEEEEcCCCchhhHHHHHHhccCCcEEEEeccccccCCceeeEEeeCCceeeccceeeecCCceEeeecccC
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~~ss~~gLt~~~~r~~g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
+.||||.|+||||||.+.+++++.++.-++++.. .+.. ++ ..|.+-.|++|+++|||+|.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~-----~~~~-------~~--~~~~~~~a~~~~l~lDei~~ 86 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGTPWVSPARV-----EYLI-------DM--PMELLQKAEGGVLYVGDIAQ 86 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTSCEECCSST-----THHH-------HC--HHHHHHHTTTSEEEEEECTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCCCeEEechh-----hCCh-------Hh--hhhHHHhCCCCeEEEeChHH
Confidence 4589999999999999999999887732332211 1111 11 36667788999999999984
No 13
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.02 E-value=2.2e-07 Score=91.51 Aligned_cols=113 Identities=22% Similarity=0.245 Sum_probs=66.2
Q ss_pred hhhccCCcccCCHHHHHHHHHHHhcCceeeCC---CCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEEE-eccccc
Q 014661 308 ILRGICPQVFGLFTVKLAVALTLIGGVQHVDA---SGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT-TGLGST 383 (420)
Q Consensus 308 l~~siaP~i~G~~~~K~ailL~L~gg~~~~~~---~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~-~G~~ss 383 (420)
+.+.+...|+|++.+|+.+..++......... ....-...-|+||.|+||||||.+.+++++.+...++. ++...+
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 33444456899999999988877522111100 00111245699999999999999999999988665553 222222
Q ss_pred cCCceeeEEeeC--CceeeccceeeecCCceEeeecccC
Q 014661 384 SAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 384 ~~gLt~~~~r~~--g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
..|+...-.... +-+.-.+|.+-.+.+||++|||+|+
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~ 127 (363)
T 3hws_A 89 EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDK 127 (363)
T ss_dssp TCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHH
T ss_pred ccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhh
Confidence 222221100000 1111123444567899999999984
No 14
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.93 E-value=2.5e-06 Score=81.47 Aligned_cols=110 Identities=15% Similarity=0.069 Sum_probs=64.8
Q ss_pred hhhccCCcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcE----EEEeccccc
Q 014661 308 ILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS----VITTGLGST 383 (420)
Q Consensus 308 l~~siaP~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~----v~~~G~~ss 383 (420)
+.+.+...++|++.+++.+...+..+..... ...+..-++||+|+||||||.+++++++..++. +++.....+
T Consensus 11 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 11 LEEELHKRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 4456666789999999988888876532110 012333589999999999999999999887542 333322211
Q ss_pred cCCceeeEEee-CCcee-----eccceeeecCCceEeeecccC
Q 014661 384 SAGLTVTAVKD-GGEWM-----LEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 384 ~~gLt~~~~r~-~g~~~-----leaGalvlad~Gv~ciDe~dK 420 (420)
.........-. .+.+. .-.+++-.+.+||++|||+|+
T Consensus 88 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~ 130 (311)
T 4fcw_A 88 EKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEK 130 (311)
T ss_dssp STTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGG
T ss_pred ccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhh
Confidence 11000000000 01000 112345556789999999985
No 15
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.92 E-value=2.7e-06 Score=79.61 Aligned_cols=73 Identities=25% Similarity=0.287 Sum_probs=45.1
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCc----EEEEeccccccCCceeeE---Eee--CCceeeccceeeecCCceEeeecc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSAGLTVTA---VKD--GGEWMLEAGALVLADGGLCCIDEF 418 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~----~v~~~G~~ss~~gLt~~~---~r~--~g~~~leaGalvlad~Gv~ciDe~ 418 (420)
.++||.|+||||||.+++++++.+++ -++++....+...+...+ .+. .|...-..|.+-.|++|+++|||+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi 109 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDEL 109 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEech
Confidence 58999999999999999999998874 344543322110000000 000 022222467777789999999999
Q ss_pred cC
Q 014661 419 DR 420 (420)
Q Consensus 419 dK 420 (420)
|+
T Consensus 110 ~~ 111 (265)
T 2bjv_A 110 AT 111 (265)
T ss_dssp GG
T ss_pred Hh
Confidence 84
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.91 E-value=4.9e-06 Score=80.60 Aligned_cols=87 Identities=21% Similarity=0.294 Sum_probs=55.8
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE-EeccccccCCceeeEEe
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI-TTGLGSTSAGLTVTAVK 393 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~-~~G~~ss~~gLt~~~~r 393 (420)
.+.|++.++..+.-.+-.+... -+...|+||.|+||||||.|++++++-....++ +++......
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~-------- 94 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS-------- 94 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH--------
T ss_pred HhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch--------
Confidence 5789999998877666543110 012348999999999999999999887755433 333221111
Q ss_pred eCCceeeccceeeecCCceEeeecccC
Q 014661 394 DGGEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 394 ~~g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
+. +....--++++|+++|||+|+
T Consensus 95 --~~--~~~~~~~~~~~~vl~lDEi~~ 117 (338)
T 3pfi_A 95 --GD--LAAILTNLSEGDILFIDEIHR 117 (338)
T ss_dssp --HH--HHHHHHTCCTTCEEEEETGGG
T ss_pred --hH--HHHHHHhccCCCEEEEechhh
Confidence 11 101111257899999999984
No 17
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.88 E-value=2.6e-06 Score=81.89 Aligned_cols=74 Identities=30% Similarity=0.359 Sum_probs=46.6
Q ss_pred CcccEEEEcCCCchhhHHHHHHhccCCcE----EEEeccccccCCceee----EEee--CCceeeccceeeecCCceEee
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRS----VITTGLGSTSAGLTVT----AVKD--GGEWMLEAGALVLADGGLCCI 415 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~~~p~~----v~~~G~~ss~~gLt~~----~~r~--~g~~~leaGalvlad~Gv~ci 415 (420)
.+.+|||.|+||||||.+.+++++.+++. ++++...... .+..+ ..+. .|.+.-..|.+-.|++|+++|
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~L 102 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 102 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEE
Confidence 35689999999999999999999988753 3333221110 00000 0000 022223567788899999999
Q ss_pred ecccC
Q 014661 416 DEFDR 420 (420)
Q Consensus 416 De~dK 420 (420)
||+|.
T Consensus 103 DEi~~ 107 (304)
T 1ojl_A 103 DEIGD 107 (304)
T ss_dssp ESCTT
T ss_pred ecccc
Confidence 99984
No 18
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.75 E-value=9.1e-06 Score=77.53 Aligned_cols=106 Identities=26% Similarity=0.231 Sum_probs=60.0
Q ss_pred hhhhhccCCcccCCHHHHHHHHHHHhcC-cee-eCCCCC-cccCcccEEEEcCCCchhhHHHHHHhccCC--------cE
Q 014661 306 NAILRGICPQVFGLFTVKLAVALTLIGG-VQH-VDASGT-KVRGESHLLLVGDPGTGKSQFLKFAAKLSN--------RS 374 (420)
Q Consensus 306 ~~l~~siaP~i~G~~~~K~ailL~L~gg-~~~-~~~~g~-~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p--------~~ 374 (420)
+.+.+.+...|.|++.+|..+.-.+-.- ... ....|. ..++..|+||.|+||||||.+++.+++... ..
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~ 102 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL 102 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCE
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcE
Confidence 3456677778999999998776222110 000 000000 124456899999999999999998877652 22
Q ss_pred EEEeccccccCCceeeEEeeCCce-eeccceeeecCCceEeeeccc
Q 014661 375 VITTGLGSTSAGLTVTAVKDGGEW-MLEAGALVLADGGLCCIDEFD 419 (420)
Q Consensus 375 v~~~G~~ss~~gLt~~~~r~~g~~-~leaGalvlad~Gv~ciDe~d 419 (420)
++++... |..... |.. .--.+.+-.+.+||++|||+|
T Consensus 103 ~~~~~~~-----l~~~~~---g~~~~~~~~~~~~~~~~vl~iDEid 140 (309)
T 3syl_A 103 VSVTRDD-----LVGQYI---GHTAPKTKEVLKRAMGGVLFIDEAY 140 (309)
T ss_dssp EEECGGG-----TCCSST---TCHHHHHHHHHHHHTTSEEEEETGG
T ss_pred EEEcHHH-----hhhhcc---cccHHHHHHHHHhcCCCEEEEEChh
Confidence 3333211 110000 100 001234445688999999998
No 19
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.59 E-value=2.3e-05 Score=74.37 Aligned_cols=61 Identities=23% Similarity=0.240 Sum_probs=40.8
Q ss_pred cccCCHHHHHHHHHHHhcCcee-eCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 315 QVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~-~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|.|++.+|+.+.-.+...... ..-.+. ....-++||.|+||||||.+++++++-+...++
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGG-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcC-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 5789999998876655432110 000011 112358999999999999999999988765443
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.58 E-value=9.1e-06 Score=78.53 Aligned_cols=60 Identities=33% Similarity=0.355 Sum_probs=41.5
Q ss_pred cccCCHHHHHHHHHHHhcCcee--eCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 315 QVFGLFTVKLAVALTLIGGVQH--VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~--~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
+|.|++.+|+.+.-.+.--... .... ..+...++||.|+||||||.|++++++-+...++
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 80 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF 80 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCT--TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEE
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhc--CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEE
Confidence 5789999998877655321110 0011 1234468999999999999999999988766554
No 21
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.57 E-value=3.6e-05 Score=79.82 Aligned_cols=62 Identities=29% Similarity=0.324 Sum_probs=42.4
Q ss_pred hhhccCCcccCCHHHHHHHHHHHhc-CceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 308 ILRGICPQVFGLFTVKLAVALTLIG-GVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 308 l~~siaP~i~G~~~~K~ailL~L~g-g~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
+-+.+...++|++.+|+.+.=.+.- .... ..+| -++||+|+||||||.|++.++...++...
T Consensus 75 ~~~~l~~di~G~~~vk~~i~~~~~l~~~~~------~~~g-~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 75 AGRLLDEEHHGLEKVKERILEYLAVQKLTK------SLKG-PILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp GGGTHHHHCSSCHHHHHHHHHHHHHHHHSS------SCCS-CEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcc------cCCC-CEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 3445566799999999877432221 1110 1122 37999999999999999999998865543
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.51 E-value=4.5e-05 Score=75.61 Aligned_cols=61 Identities=28% Similarity=0.244 Sum_probs=41.2
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcc-cCcccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKV-RGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~-Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
+|.|++.+|..+.-.+...... ..-.... +..-|+||.|+||||||.|++++++-....++
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLR-PELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHC-TTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HhCCHHHHHHHHHHHHHHhccC-HHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 5789999998877666321110 0000011 22358999999999999999999988766554
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.51 E-value=2.6e-05 Score=72.29 Aligned_cols=58 Identities=26% Similarity=0.337 Sum_probs=36.5
Q ss_pred cccCCHHHHHHHHHHH--hcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcE
Q 014661 315 QVFGLFTVKLAVALTL--IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L--~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~ 374 (420)
+|.|++.+|+.+.-.+ +.........| .+..-++||.|+||||||.+++++++-....
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g--~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLG--AKVPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC--------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcC--CCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5789999988763222 11111111111 2344579999999999999999998765443
No 24
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.46 E-value=7e-05 Score=80.72 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=62.6
Q ss_pred hhhccCCcccCCHHHHHHHHHHHh----cCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE-Eecccc
Q 014661 308 ILRGICPQVFGLFTVKLAVALTLI----GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI-TTGLGS 382 (420)
Q Consensus 308 l~~siaP~i~G~~~~K~ailL~L~----gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~-~~G~~s 382 (420)
+.+.+...++|++.++..+.-.+- |... ..|-.-|+||.|+||||||.+.+++++.++..++ ++...-
T Consensus 452 l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~-------~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 452 LGDRLKMLVFGQDKAIEALTEAIKMARAGLGH-------EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp HHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSC-------TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHhcccCC-------CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 455677889999988865544432 2211 1122348999999999999999999998876544 332211
Q ss_pred c----cCCceeeEEeeCCcee------eccceeeecCCceEeeecccC
Q 014661 383 T----SAGLTVTAVKDGGEWM------LEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 383 s----~~gLt~~~~r~~g~~~------leaGalvlad~Gv~ciDe~dK 420 (420)
+ ...|..+. .| |+ .-.+++-.+++||++|||+||
T Consensus 525 ~~~~~~~~l~g~~---~g-~~g~~~~~~l~~~~~~~~~~vl~lDEi~~ 568 (758)
T 1r6b_X 525 MERHTVSRLIGAP---PG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_dssp SSSSCCSSSCCCC---SC-SHHHHHTTHHHHHHHHCSSEEEEEETGGG
T ss_pred cchhhHhhhcCCC---CC-CcCccccchHHHHHHhCCCcEEEEeCccc
Confidence 1 11222110 01 11 013455678899999999986
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.45 E-value=0.00012 Score=70.68 Aligned_cols=56 Identities=32% Similarity=0.303 Sum_probs=36.4
Q ss_pred cccCCHHHHHHHHHHHhcCcee-eCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~-~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
+|.|++.+|+.+.-.+.--... ..-.|. .+..-++||.|+||||||.|++++++-+
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 5789999988775443211000 000011 1223479999999999999999999876
No 26
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.45 E-value=6.7e-05 Score=75.81 Aligned_cols=56 Identities=34% Similarity=0.322 Sum_probs=37.7
Q ss_pred cccCCHHHHHHHHHHHhcCceee-CCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~-~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
+|.|++.+|..+.-.+....... .-.| ..+..-++||.|+||||||.|++++++-+
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999988776553211000 0001 11223589999999999999999999877
No 27
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.41 E-value=5.6e-05 Score=72.41 Aligned_cols=87 Identities=28% Similarity=0.392 Sum_probs=52.7
Q ss_pred CcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcE-EEEeccccccCCceeeEE
Q 014661 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS-VITTGLGSTSAGLTVTAV 392 (420)
Q Consensus 314 P~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~-v~~~G~~ss~~gLt~~~~ 392 (420)
.++.|++.++..+.-.+-..... -+..-++||.|+||||||.+++++++-+... +++++...+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh-------
Confidence 35779888877665444321100 0123589999999999999999998765443 33433221110
Q ss_pred eeCCceeecccee--eecCCceEeeecccC
Q 014661 393 KDGGEWMLEAGAL--VLADGGLCCIDEFDR 420 (420)
Q Consensus 393 r~~g~~~leaGal--vlad~Gv~ciDe~dK 420 (420)
+++ .+++ .++++|+++|||+|+
T Consensus 78 ---~~l---~~~l~~~~~~~~~l~lDEi~~ 101 (324)
T 1hqc_A 78 ---GDL---AAILANSLEEGDILFIDEIHR 101 (324)
T ss_dssp ---HHH---HHHHTTTCCTTCEEEETTTTS
T ss_pred ---HHH---HHHHHHhccCCCEEEEECCcc
Confidence 110 0111 257899999999984
No 28
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.35 E-value=3e-05 Score=76.03 Aligned_cols=60 Identities=35% Similarity=0.386 Sum_probs=40.7
Q ss_pred cccCCHHHHHHHHHHHhcCce--eeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 315 QVFGLFTVKLAVALTLIGGVQ--HVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~--~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
+|.|++.+|+.+.-.+..... .....+ .+..-++||.|+||||||.|++++++-+...++
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 113 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFF 113 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 588999998877665532111 000111 233458999999999999999999988765544
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.34 E-value=5.5e-05 Score=74.17 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=40.3
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|.|++.+|+.+.-.+..............+..-++||.|+||||||.|++++++-+...++
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 57899999987765553211100000000123458999999999999999999988765443
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.27 E-value=6.8e-05 Score=70.59 Aligned_cols=60 Identities=25% Similarity=0.301 Sum_probs=39.1
Q ss_pred cccCCHHHHHHHHHHHhc---CceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 315 QVFGLFTVKLAVALTLIG---GVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~g---g~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|.|++.+|+.+.-.+.. .......-| .+..-++||.|+||||||.|++++++-....++
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVG--IEPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHC--CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 477999888877544422 110000001 123347999999999999999999988766544
No 31
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.24 E-value=8.1e-05 Score=75.26 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=53.9
Q ss_pred cccCCHHHH---HHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEEE-eccccccCCceee
Q 014661 315 QVFGLFTVK---LAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT-TGLGSTSAGLTVT 390 (420)
Q Consensus 315 ~i~G~~~~K---~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~-~G~~ss~~gLt~~ 390 (420)
.+.|++.++ +.+.-.+-.|. . .++||.|+||||||+|++.+++.+.+.++. ++.+ .| ..
T Consensus 27 ~ivGq~~~~~~~~~L~~~i~~~~---------~---~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~---~~--~~ 89 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPLPRAIEAGH---------L---HSMILWGPPGTGKTTLAEVIARYANADVERISAVT---SG--VK 89 (447)
T ss_dssp TCCSCHHHHSTTSHHHHHHHHTC---------C---CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT---CC--HH
T ss_pred HhCCcHHHHhchHHHHHHHHcCC---------C---cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc---CC--HH
Confidence 578999988 55555555441 1 379999999999999999999988766543 2211 11 11
Q ss_pred EEeeCCceeeccceeeecCCceEeeecccC
Q 014661 391 AVKDGGEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 391 ~~r~~g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
-+++--+... .....+.++|++|||+|.
T Consensus 90 ~ir~~~~~a~--~~~~~~~~~iLfIDEI~~ 117 (447)
T 3pvs_A 90 EIREAIERAR--QNRNAGRRTILFVDEVHR 117 (447)
T ss_dssp HHHHHHHHHH--HHHHTTCCEEEEEETTTC
T ss_pred HHHHHHHHHH--HhhhcCCCcEEEEeChhh
Confidence 1111000000 011246789999999974
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.24 E-value=0.00038 Score=67.88 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=36.1
Q ss_pred CcccCCHHHHHHH--HHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCC
Q 014661 314 PQVFGLFTVKLAV--ALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 314 P~i~G~~~~K~ai--lL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-.+.|++.++.++ ++..+.... ...-++||.|+||||||.+++++++.+.
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~---------~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK---------IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC---------CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhccChHHHHHHHHHHHHHHHcCC---------CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999998764 444443211 1113799999999999999999987765
No 33
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.09 E-value=0.00039 Score=74.92 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=58.1
Q ss_pred hccCCcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCc----EEEEeccccccC
Q 014661 310 RGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSA 385 (420)
Q Consensus 310 ~siaP~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~----~v~~~G~~ss~~ 385 (420)
+.+...|+|++.++..+.-.+--..... .+ ..|..-|+||.|+||||||.+.+++++.+.+ -++++...-...
T Consensus 487 ~~l~~~viGq~~a~~~l~~~i~~~~~~~-~~--~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 487 NILHSRVIGQDEAVVAVAKAVRRARAGL-KD--PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTTC-SC--TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred HHHhCcCcChHHHHHHHHHHHHHHHccc-CC--CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 3455678999998877766664321100 00 1122238999999999999999999998632 233332211110
Q ss_pred CceeeEEeeCCceeeccceeeecCCceEeeecccC
Q 014661 386 GLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 386 gLt~~~~r~~g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
...+ .|.+ .+++-.+.+||++|||+||
T Consensus 564 -~~~~----~~~l---~~~~~~~~~~vl~lDEi~~ 590 (758)
T 3pxi_A 564 -HSTS----GGQL---TEKVRRKPYSVVLLDAIEK 590 (758)
T ss_dssp -CCCC-------C---HHHHHHCSSSEEEEECGGG
T ss_pred -cccc----cchh---hHHHHhCCCeEEEEeCccc
Confidence 0001 1111 1234456789999999986
No 34
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.07 E-value=0.00029 Score=62.70 Aligned_cols=44 Identities=30% Similarity=0.272 Sum_probs=34.0
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.+.|++..+..+.-.+-.+ ..-|+||.|+||+|||.+++.+++-
T Consensus 18 ~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4679998888776666443 1126999999999999999988764
No 35
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.04 E-value=0.00052 Score=58.45 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=36.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc----EEEEeccccccCCceeeEEeeCCceeeccceeeecCCceEeeeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFD 419 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~----~v~~~G~~ss~~gLt~~~~r~~g~~~leaGalvlad~Gv~ciDe~d 419 (420)
.++|+|.||+|||.|++.++...+. .+|+++...... + .+.+-.+++|||++
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------------~-~~~~~~lLilDE~~ 93 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------------D-AAFEAEYLAVDQVE 93 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------------G-GGGGCSEEEEESTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------------H-HHhCCCEEEEeCcc
Confidence 5899999999999999999887632 344443321111 1 24566899999986
No 36
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.03 E-value=0.00012 Score=71.04 Aligned_cols=45 Identities=33% Similarity=0.448 Sum_probs=36.4
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.++|++.++..+-..+-.|. . .|+||.|+||+|||++++..++..
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~---------~---~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGK---------L---PHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTC---------C---CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCC---------C---ceEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999988777766541 1 279999999999999999998764
No 37
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.03 E-value=0.00023 Score=67.73 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=25.9
Q ss_pred ccCcccEEEEcCCCchhhHHHHHHhccCCcEE
Q 014661 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v 375 (420)
.+....+||.|.||||||.|.+++++-+...+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34556899999999999999999988765443
No 38
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.00 E-value=0.00013 Score=68.06 Aligned_cols=58 Identities=26% Similarity=0.229 Sum_probs=34.4
Q ss_pred cccCCHHHHHHHHHHHh--cCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcE
Q 014661 315 QVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~--gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~ 374 (420)
+|.|++.+|+.+.-.+- ........-| .+..-++||.|+||||||.|++++++-+...
T Consensus 12 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 12 DMAGNEEAKEEVVEIVDFLKYPERYANLG--AKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp TSSSCTTTHHHHHHHHHHHHCHHHHHHHS--CCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred HhCCcHHHHHHHHHHHHHHHChHHHHHCC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 47788777766543322 1000000000 1122359999999999999999998865443
No 39
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.88 E-value=0.00071 Score=65.50 Aligned_cols=58 Identities=29% Similarity=0.466 Sum_probs=40.8
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEE-EEec
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV-ITTG 379 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v-~~~G 379 (420)
.++|.+.++..+-+.+-.|... | +.--|++|+|+||+|||+|++.++......+ +++|
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~----~---~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg 84 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMR----G---EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSG 84 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHH----T---CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred HccCcHHHHHHHHHHHHHHHhc----C---CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEec
Confidence 3678999998888877544211 0 0113899999999999999999998874432 3444
No 40
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.78 E-value=0.00029 Score=67.23 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=35.3
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.+.|++.++..+.-.+-+|. .-|+||.|+||+|||++++.+++-.
T Consensus 26 ~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKTGS------------MPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TCCSCHHHHHHHHHHHHHTC------------CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHcCC------------CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 57899999987775555431 1279999999999999999987753
No 41
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.78 E-value=0.0008 Score=67.61 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=49.7
Q ss_pred hhhhccCCcccCCHHHHHHHHHHHhcCceee-CCCCCcc-cCcccEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHV-DASGTKV-RGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 307 ~l~~siaP~i~G~~~~K~ailL~L~gg~~~~-~~~g~~~-Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
.|.+.+...|.|++.+|+++..++.....+. ...+.+. ...-|+||+|.||||||.+.+..++..+..++.
T Consensus 8 ~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~ 80 (444)
T 1g41_A 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (444)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence 3455566679999999999999886642211 1111100 112489999999999999999999988766553
No 42
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.71 E-value=0.0014 Score=59.29 Aligned_cols=57 Identities=28% Similarity=0.318 Sum_probs=36.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC----cEEEEeccccccCCceeeEEeeCCceeeccceeeecCCceEeeeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFD 419 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p----~~v~~~G~~ss~~gLt~~~~r~~g~~~leaGalvlad~Gv~ciDe~d 419 (420)
++||.|+||+|||.|++.+++-.. +.+|++....... + .-.++ -++..++++|||+|
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~----~~~~~~vliiDe~~ 114 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S---------TALLE----GLEQFDLICIDDVD 114 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C---------GGGGT----TGGGSSEEEEETGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H---------HHHHH----hccCCCEEEEeccc
Confidence 799999999999999998876553 2344433211100 0 00011 13567899999987
No 43
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.62 E-value=0.0015 Score=60.36 Aligned_cols=63 Identities=27% Similarity=0.279 Sum_probs=39.0
Q ss_pred cccCCHHHHHHHHHHH--hcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCc-EEEEec
Q 014661 315 QVFGLFTVKLAVALTL--IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-SVITTG 379 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L--~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~-~v~~~G 379 (420)
+|.|++.+|+.+.-.+ +.........| .+-.-++||+|+||||||.|++.+++..+. -+++++
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~ 78 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLG--GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 78 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcC--CCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH
Confidence 5789999887664322 22111111111 122346999999999999999999887653 344554
No 44
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.62 E-value=0.00061 Score=64.64 Aligned_cols=44 Identities=30% Similarity=0.272 Sum_probs=33.2
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.+.|++.++..+.-.+-.| ..-|+||.|+||+|||.+++.+++-
T Consensus 18 ~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTT------------CCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhCC------------CCCeEEEECcCCcCHHHHHHHHHHH
Confidence 5779999887655443321 1237999999999999999998775
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.60 E-value=0.0002 Score=67.02 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=23.2
Q ss_pred cccEEEEcCCCchhhHHHHHHhccCCc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
.-++||.|+||||||.+++++++....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~ 90 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNF 90 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 348999999999999999999886543
No 46
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.00073 Score=64.24 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=34.2
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.+.|++.++..+.-.+-+|. --|+||.|+||+|||++++.+++-.
T Consensus 22 ~~~g~~~~~~~l~~~l~~~~------------~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAKDGN------------MPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GCCSCTHHHHHHHHHHHSCC------------CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHcCC------------CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 57799998877665554431 1269999999999999999887653
No 47
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.33 E-value=0.0048 Score=53.16 Aligned_cols=47 Identities=21% Similarity=0.240 Sum_probs=35.6
Q ss_pred CCcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 313 aP~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
...++|.+.....+.-.+..+ ..-|+||.|+||+|||.|++.+++-.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345779888777766665442 12379999999999999999988764
No 48
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.33 E-value=0.001 Score=65.86 Aligned_cols=72 Identities=28% Similarity=0.411 Sum_probs=46.6
Q ss_pred CcccEEEEcCCCchhhHHHHHHhccCCcE--EEEeccccccCCceeeEE------eeC----CceeeccceeeecCCceE
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRS--VITTGLGSTSAGLTVTAV------KDG----GEWMLEAGALVLADGGLC 413 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~~~p~~--v~~~G~~ss~~gLt~~~~------r~~----g~~~leaGalvlad~Gv~ 413 (420)
.+.++|+.|++||||+.+.+++...++|+ -++.-. ++ .+..... ... |...-.+|.+-.|+||++
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~-~~--~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtl 235 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALN-VA--SIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTL 235 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEE-TT--TSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEE
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEe-cC--CCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEE
Confidence 35689999999999999999999998863 111111 00 1110000 001 222235788889999999
Q ss_pred eeecccC
Q 014661 414 CIDEFDR 420 (420)
Q Consensus 414 ciDe~dK 420 (420)
+|||++.
T Consensus 236 fldei~~ 242 (387)
T 1ny5_A 236 FLDEIGE 242 (387)
T ss_dssp EEESGGG
T ss_pred EEcChhh
Confidence 9999873
No 49
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.27 E-value=0.002 Score=60.64 Aligned_cols=63 Identities=24% Similarity=0.357 Sum_probs=38.2
Q ss_pred cccCCHHHHHHHHHHH---hcCceeeCCCCCc-ccCcccEEEEcCCCchhhHHHHHHhccCCc-EEEEecc
Q 014661 315 QVFGLFTVKLAVALTL---IGGVQHVDASGTK-VRGESHLLLVGDPGTGKSQFLKFAAKLSNR-SVITTGL 380 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L---~gg~~~~~~~g~~-~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~-~v~~~G~ 380 (420)
+|-|++.+|..+--.+ ++.......-|.. .+| +||+|.||||||.|++.++...+. .++++|.
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G---vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~ 78 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG---VLLAGPPGCGKTLLAKAVANESGLNFISVKGP 78 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE---EEEESSTTSCHHHHHHHHHHHTTCEEEEEETT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe---EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcH
Confidence 3567788877664332 2222111101111 233 999999999999999999987754 4445554
No 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.23 E-value=0.0018 Score=65.38 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=37.2
Q ss_pred ccCCcccCCHHHHHHHHH--HHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCC
Q 014661 311 GICPQVFGLFTVKLAVAL--TLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 311 siaP~i~G~~~~K~ailL--~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
...-.|.|++.+|..+.. ..+-. |. ...-|+||.|.||||||.|.+++++...
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~~~~-------~~--~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVELIKS-------KK--MAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHHT-------TC--CTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hchhhccCHHHHHHHHHHHHHHHHh-------CC--CCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 344568899999886443 22211 11 1123799999999999999999998765
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.17 E-value=0.0031 Score=68.79 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=54.0
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCc----EEEEeccccccC----C
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSA----G 386 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~----~v~~~G~~ss~~----g 386 (420)
.|+|++.++..+.-.+-.+.... .+ ..|..-++||+|+||||||.+.+++++.+++ -+++++...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~-~~--~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~ 635 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGL-KD--PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSR 635 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGC-SC--SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGG
T ss_pred ccCCcHHHHHHHHHHHHHHhccc-CC--CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHH
Confidence 46788877766655543221100 00 0122348999999999999999999988743 244443322111 1
Q ss_pred ceeeE---E-eeC-CceeeccceeeecCCceEeeecccC
Q 014661 387 LTVTA---V-KDG-GEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 387 Lt~~~---~-r~~-g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
|..+. + .+. |.+ .+++-.+.+||++|||+||
T Consensus 636 l~g~~~~~~G~~~~g~l---~~~~~~~~~~vl~lDEi~~ 671 (854)
T 1qvr_A 636 LIGAPPGYVGYEEGGQL---TEAVRRRPYSVILFDEIEK 671 (854)
T ss_dssp C--------------CH---HHHHHHCSSEEEEESSGGG
T ss_pred HcCCCCCCcCccccchH---HHHHHhCCCeEEEEecccc
Confidence 11000 0 000 111 1233345689999999985
No 52
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=96.17 E-value=0.0028 Score=62.21 Aligned_cols=74 Identities=24% Similarity=0.414 Sum_probs=46.7
Q ss_pred CcccEEEEcCCCchhhHHHHHHhccCCcE--EE-EeccccccCCceeeEE--eeC----CceeeccceeeecCCceEeee
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRS--VI-TTGLGSTSAGLTVTAV--KDG----GEWMLEAGALVLADGGLCCID 416 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~~~p~~--v~-~~G~~ss~~gLt~~~~--r~~----g~~~leaGalvlad~Gv~ciD 416 (420)
.+.++|+.|++||||+.+.+++.+.++|. +. ++-... ...+..+.. ... |...-.+|.+-.|+||+++||
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~-~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfld 229 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASI-PQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLD 229 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSS-CTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEE
T ss_pred cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccC-ChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEec
Confidence 45689999999999999999999998875 21 111110 111110000 001 111234678889999999999
Q ss_pred cccC
Q 014661 417 EFDR 420 (420)
Q Consensus 417 e~dK 420 (420)
|++.
T Consensus 230 ei~~ 233 (368)
T 3dzd_A 230 EVGE 233 (368)
T ss_dssp TGGG
T ss_pred Chhh
Confidence 9873
No 53
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.14 E-value=0.0056 Score=52.67 Aligned_cols=46 Identities=26% Similarity=0.259 Sum_probs=34.9
Q ss_pred CcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 314 P~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
..++|.+.....++-.+..+ ..-|+||.|+||||||.|++.+++-.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35789888777766665432 12379999999999999999987764
No 54
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.12 E-value=0.0041 Score=57.25 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=23.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v 375 (420)
+++|+|.||+|||.|++.++.....+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~ 77 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPF 77 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 399999999999999999998876443
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.11 E-value=0.0072 Score=57.38 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=38.1
Q ss_pred cccCCHHHHHHHHHHHhcCcee---eCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 315 QVFGLFTVKLAVALTLIGGVQH---VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~---~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
+|.|++.+|+.+.-.+.-.... ....| .+..-++||.|+||||||.|++++++.+...++
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~--~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i 78 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFG--MTPSKGVLFYGPPGCGKTLLAKAIANECQANFI 78 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHC--CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEE
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcC--CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEE
Confidence 4778888887665433211000 00000 122347999999999999999999998765543
No 56
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.98 E-value=0.0063 Score=62.47 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=38.2
Q ss_pred cccCCHHHHHHHHHHHhcC-------ceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEE
Q 014661 315 QVFGLFTVKLAVALTLIGG-------VQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg-------~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v 375 (420)
++.|++.++..+.-.|-.. ..+...+|. ...-++||.|+||||||.+++.+++-+...+
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~--~~~~~lLL~GppGtGKTtla~~la~~l~~~~ 105 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGS--GVFRAAMLYGPPGIGKTTAAHLVAQELGYDI 105 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTST--TSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCC--CCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 4779988887766555431 111111111 1124899999999999999999998775433
No 57
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.98 E-value=0.0038 Score=59.67 Aligned_cols=87 Identities=23% Similarity=0.231 Sum_probs=49.8
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccE-EEEcCCCchhhHHHHHHhccCCc-EEEEeccccccCCceeeEE
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHL-LLVGDPGTGKSQFLKFAAKLSNR-SVITTGLGSTSAGLTVTAV 392 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihi-LlvGdpg~gKSqlL~~~~~~~p~-~v~~~G~~ss~~gLt~~~~ 392 (420)
.+.|++.++..+.-.+-.|.. -|+ |+-|+||||||.+++.+++-... -+++++.. .| ....
T Consensus 27 ~ivg~~~~~~~l~~~l~~~~~------------~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~---~~--~~~i 89 (324)
T 3u61_B 27 ECILPAFDKETFKSITSKGKI------------PHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD---CK--IDFV 89 (324)
T ss_dssp TSCCCHHHHHHHHHHHHTTCC------------CSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT---CC--HHHH
T ss_pred HHhCcHHHHHHHHHHHHcCCC------------CeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc---cC--HHHH
Confidence 567999988776655553311 145 55566999999999999876643 34444322 22 1111
Q ss_pred eeC-CceeeccceeeecCCceEeeecccC
Q 014661 393 KDG-GEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 393 r~~-g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
++. .++. ...-..++.+|++|||+|.
T Consensus 90 ~~~~~~~~--~~~~~~~~~~vliiDEi~~ 116 (324)
T 3u61_B 90 RGPLTNFA--SAASFDGRQKVIVIDEFDR 116 (324)
T ss_dssp HTHHHHHH--HBCCCSSCEEEEEEESCCC
T ss_pred HHHHHHHH--hhcccCCCCeEEEEECCcc
Confidence 111 1110 0011223678999999984
No 58
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.92 E-value=0.0062 Score=65.45 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=33.5
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.+.|.+.....++-.|.. +..-|+||+|+||||||.+++.+++..
T Consensus 187 ~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 366888777665555432 123489999999999999999988754
No 59
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.82 E-value=0.0013 Score=67.09 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=37.2
Q ss_pred cccCCHHHHHHHHHHHhcC---ceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 315 QVFGLFTVKLAVALTLIGG---VQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg---~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|.|.+..+..+.-.+.-- ......-| .+..-++||.|+||||||.+++++++-+...++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g--~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv 267 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIG--VKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHT--CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEE
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcC--CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 5788888776654333210 00000000 233457999999999999999999887755443
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.80 E-value=0.0049 Score=59.33 Aligned_cols=45 Identities=27% Similarity=0.276 Sum_probs=36.3
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.+.|++.++..+.-.+-+|.. -|+||.|+||+|||++++.+++..
T Consensus 38 ~i~g~~~~~~~l~~~l~~~~~------------~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSANL------------PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCTTC------------CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcCCC------------CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999998888777665421 269999999999999999988764
No 61
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.72 E-value=0.0076 Score=56.35 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=23.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v 375 (420)
+++|+|.||+|||.|++.++...+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~ 101 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPF 101 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCE
Confidence 399999999999999999998876443
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.013 Score=58.68 Aligned_cols=29 Identities=38% Similarity=0.607 Sum_probs=25.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
.+||.|+||||||.|.++++.-+...++.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 49999999999999999999888777664
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.51 E-value=0.0079 Score=65.58 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=33.7
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.+.|.+.....++-.|..+ ..-|+||+|+||||||.|++.+++..
T Consensus 171 ~viGr~~~i~~l~~~l~~~------------~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRR------------TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCS------------SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHhcC------------CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3668887776666555432 22379999999999999999998764
No 64
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.39 E-value=0.016 Score=51.62 Aligned_cols=47 Identities=30% Similarity=0.261 Sum_probs=35.8
Q ss_pred CcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 314 P~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
..++|++.++..+.-.+-.|. ..-.+||.|+||+|||++++.+++-.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----------~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----------IHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----------CCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899998887776665431 11268999999999999999987654
No 65
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.37 E-value=0.019 Score=58.57 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=38.3
Q ss_pred cccCCHHHHHHHHHH--HhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcE-EEEecc
Q 014661 315 QVFGLFTVKLAVALT--LIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS-VITTGL 380 (420)
Q Consensus 315 ~i~G~~~~K~ailL~--L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~-v~~~G~ 380 (420)
+|.|++.+|..+-=. .++.......-|.++ .-++||+|+||||||.|+++++..+... ++++|.
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~i--p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~ 98 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARI--PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 98 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCC--CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCC--CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 466777777544321 122222111112111 2249999999999999999999887654 344553
No 66
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.16 E-value=0.018 Score=58.34 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=35.3
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.|.|++.....++-.|-.+ ..-|+||+|+||||||.+++.+++..
T Consensus 181 ~iiGr~~~i~~l~~~l~r~------------~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4779998887766555432 22389999999999999999998775
No 67
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.11 E-value=0.015 Score=55.72 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=30.2
Q ss_pred ccCcccEEEEcCCCchhhHH-HHHHhccC-----CcEEEEeccccc
Q 014661 344 VRGESHLLLVGDPGTGKSQF-LKFAAKLS-----NRSVITTGLGST 383 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSql-L~~~~~~~-----p~~v~~~G~~ss 383 (420)
.|| + +++.|+||+|||+| |+++++.. -+.+|+++..+.
T Consensus 27 ~~G-i-teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 27 QSG-L-LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp CSE-E-EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred cCC-e-EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 467 6 89999999999998 66665553 468999998874
No 68
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.02 Score=57.27 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
.|||.|+||||||.|.++++.-+...++.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 59999999999999999999887766653
No 69
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.024 Score=56.04 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=25.4
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
.+||.|.||||||.|.++++.-+...++.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 49999999999999999999887766653
No 70
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.88 E-value=0.013 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.4
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
|+|+.|+||||||.+..++++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999888887765
No 71
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.029 Score=56.16 Aligned_cols=29 Identities=38% Similarity=0.494 Sum_probs=25.3
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
.|||.|+||||||.|.++++.-+...++.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 59999999999999999999887666553
No 72
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.70 E-value=0.017 Score=48.84 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=22.7
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHhc
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..+..++|+++|+||+|||.|++....
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 345568999999999999999998753
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.67 E-value=0.018 Score=49.95 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=23.8
Q ss_pred CcccCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 342 TKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 342 ~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
+..+..++|+++|+||+|||.|++....-
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 33456789999999999999999887643
No 74
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.037 Score=55.63 Aligned_cols=29 Identities=34% Similarity=0.559 Sum_probs=25.4
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
.|||.|.||||||.|.++++.-+...++.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 59999999999999999999877766653
No 75
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.44 E-value=0.03 Score=56.77 Aligned_cols=63 Identities=25% Similarity=0.312 Sum_probs=37.7
Q ss_pred cccCCHHHHHHHHHH--HhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEE-EEec
Q 014661 315 QVFGLFTVKLAVALT--LIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV-ITTG 379 (420)
Q Consensus 315 ~i~G~~~~K~ailL~--L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v-~~~G 379 (420)
+|.|.+.+|..+-=. .++.......-|. +-.-++||+|+||||||.|+++++.-+...+ ++++
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~--~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~ 82 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGA--RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISG 82 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTC--CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCC--CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCH
Confidence 577888877654322 1222221111121 2223599999999999999999987665433 3443
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.43 E-value=0.022 Score=54.85 Aligned_cols=46 Identities=20% Similarity=0.021 Sum_probs=33.0
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhc-cC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAK-LS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~-~~ 371 (420)
.+.|++.++..+.-.+... | +. -|+||+|+||+|||++++.+++ +.
T Consensus 15 ~~vg~~~~~~~l~~~~~~~-------~---~~-~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSDQP-------R---DL-PHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp GCCSCHHHHHHHHTTTTCT-------T---CC-CCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred HhcCCHHHHHHHHHHHhhC-------C---CC-CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4669998887654443111 1 12 2599999999999999999988 54
No 77
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.047 Score=54.37 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=25.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
.|||.|.||||||.|.++++.-+...++.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 59999999999999999999887766653
No 78
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.35 E-value=0.017 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
+++|+|+||+|||.|++.++....
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999987763
No 79
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.26 E-value=0.044 Score=52.96 Aligned_cols=50 Identities=22% Similarity=0.183 Sum_probs=35.3
Q ss_pred CcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 314 P~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
..++|.+.....+.-.|-.... + ...-+++|.|+||||||.+++.+++-.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~-----~---~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR-----G---EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS-----S---CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-----C---CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4578998887776655532110 0 112389999999999999999988765
No 80
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.24 E-value=0.038 Score=59.34 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=36.2
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.|.|++.....++-.|... ..-|+||+|+||||||.+.+.+++..
T Consensus 181 ~iiG~~~~i~~l~~~l~~~------------~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHhCC------------CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4789999888777666542 22379999999999999999998875
No 81
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.20 E-value=0.025 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.4
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
-++|+++|+||+|||.|++....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998754
No 82
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.17 E-value=0.026 Score=48.87 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=24.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
...++|+++|+||+|||.|++++..-.+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 34589999999999999999998765543
No 83
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.04 E-value=0.034 Score=48.92 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=27.4
Q ss_pred CcccEEEEcCCCchhhHHHHHHhccCCcEEEEeccc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG 381 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~~ 381 (420)
|.+ +.|+|.+|+|||+|++.++.+.| .++..|..
T Consensus 7 g~i-i~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~ 40 (205)
T 3tr0_A 7 ANL-FIISAPSGAGKTSLVRALVKALA-EIKISISH 40 (205)
T ss_dssp CCE-EEEECCTTSCHHHHHHHHHHHSS-SEEECCCE
T ss_pred CcE-EEEECcCCCCHHHHHHHHHhhCC-CeEEecee
Confidence 444 77899999999999999999987 56666543
No 84
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.96 E-value=0.026 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.348 Sum_probs=21.6
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
-+++|.|+||||||.|++++++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999988765
No 85
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.91 E-value=0.054 Score=49.72 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=22.5
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
...++|+|||.||+|||.|+.....-.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 457899999999999999999876543
No 86
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.88 E-value=0.041 Score=47.85 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=26.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~ 380 (420)
-+.|+|.||+|||++++.++.-..-.++++|.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d 35 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGD 35 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEEEEHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCeEEEccc
Confidence 37899999999999999998855555888775
No 87
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.84 E-value=0.04 Score=47.86 Aligned_cols=32 Identities=38% Similarity=0.441 Sum_probs=25.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc-EEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR-SVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~-~v~~~G~ 380 (420)
.+.|+|.||+|||+|++..+..... .++..|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 4889999999999999999988433 3566654
No 88
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.80 E-value=0.049 Score=49.41 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=22.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCC
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
...++|+|+|+||+|||.|++....-..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3468999999999999999998765443
No 89
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.78 E-value=0.029 Score=48.99 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=21.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
++.|+|.+|+|||+||+.++.+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998765
No 90
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.77 E-value=0.045 Score=53.16 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=30.1
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC--C--------cEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS--N--------RSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~--p--------~~v~~~G~~s 382 (420)
+|.+ ++|+|+||+|||||++.++... | +.+|++|..+
T Consensus 130 ~G~i-~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 130 TQAI-TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp SSEE-EEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCeE-EEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 4444 8899999999999999988876 3 4489998775
No 91
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.62 E-value=0.036 Score=46.61 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999988764
No 92
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.61 E-value=0.04 Score=59.65 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=27.5
Q ss_pred CcccEEEEcCCCchhhHHHHHHhccCCcEE-EEec
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRSV-ITTG 379 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~~~p~~v-~~~G 379 (420)
..-++||+|+||||||.|++.++...+..+ +++|
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~ 271 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 334799999999999999999999887654 3444
No 93
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.60 E-value=0.056 Score=48.24 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=28.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC-C---------cEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS-N---------RSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~-p---------~~v~~~G~~s 382 (420)
+|.+ +.|+|.||+|||+|++.++... | +.+|..+...
T Consensus 24 ~G~~-~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 24 TQAI-TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp SSEE-EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCcE-EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 4554 7899999999999999998733 3 2678877653
No 94
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.57 E-value=0.035 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.0
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999987653
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.57 E-value=0.036 Score=66.94 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=19.4
Q ss_pred ccEEEEcCCCchhhHHH-HHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFL-KFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL-~~~~~~ 370 (420)
-|+||+|+||||||.++ +++++.
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999 555554
No 96
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.50 E-value=0.036 Score=47.82 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.0
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999987754
No 97
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.50 E-value=0.05 Score=52.73 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=35.9
Q ss_pred CcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcc--cEEEEcCCCchhhHHHHHHhccCC
Q 014661 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGES--HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 314 P~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~i--hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
+.+.|.+.....+.-.+-..... +..- +++|.|.||+|||.|++.+++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 45889988777666555432110 1112 799999999999999999877653
No 98
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.48 E-value=0.036 Score=46.57 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=19.7
Q ss_pred ccEEEEcCCCchhhHHHHHHhc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
++|+++|+||+|||.|++....
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 6899999999999999998753
No 99
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.44 E-value=0.08 Score=51.04 Aligned_cols=46 Identities=30% Similarity=0.264 Sum_probs=34.4
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.+.|++.++..+.-.+-.|. ..-.+||.|+||+|||++++.+++-.
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~-----------~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGR-----------IHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTC-----------CCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHhCC-----------CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899998887766664331 11147999999999999999887654
No 100
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.43 E-value=0.039 Score=46.69 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.8
Q ss_pred cccEEEEcCCCchhhHHHHHHhcc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.++|+++|+||+|||.|++....-
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 468999999999999999987643
No 101
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.41 E-value=0.037 Score=48.51 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=22.3
Q ss_pred CCCcccCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 340 SGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 340 ~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.|...+..++|+++|+||+|||.|++....-
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3445566799999999999999999987653
No 102
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.40 E-value=0.038 Score=46.49 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.9
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||+|++....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 357999999999999999988753
No 103
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.36 E-value=0.042 Score=46.05 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.7
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||+|++....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 57899999999999999998764
No 104
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.36 E-value=0.055 Score=46.17 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=24.3
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
.|.|+|.||+|||++++..+...+. .++.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~-~~id 34 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM-EFYD 34 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC-EEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-CEEe
Confidence 6999999999999999999987654 3444
No 105
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.33 E-value=0.041 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999998764
No 106
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.33 E-value=0.044 Score=52.19 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=25.2
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC----CcEEEEec
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS----NRSVITTG 379 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~----p~~v~~~G 379 (420)
-++||.|+||||||.|++.+++.. .+.+|++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 379999999999999999998765 23455543
No 107
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.29 E-value=0.039 Score=47.66 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=20.8
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
+.|+++|+||+|||.|++.....
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 67999999999999999988764
No 108
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.29 E-value=0.049 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.2
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 457999999999999999998764
No 109
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.27 E-value=0.042 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.1
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999987753
No 110
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.27 E-value=0.042 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.9
Q ss_pred ccEEEEcCCCchhhHHHHHHh
Q 014661 348 SHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~ 368 (420)
++|+++|+||+|||.|++...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998874
No 111
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.26 E-value=0.048 Score=45.77 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.3
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999988754
No 112
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.26 E-value=0.044 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.5
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 58999999999999999988753
No 113
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.23 E-value=0.043 Score=46.12 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.0
Q ss_pred cccEEEEcCCCchhhHHHHHHhcc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.++|+++|+||+|||.|++....-
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 489999999999999999887543
No 114
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.14 E-value=0.046 Score=46.51 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=21.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+..++|+++|++|+|||.|++....
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4568999999999999999987643
No 115
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.13 E-value=0.045 Score=45.90 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.9
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||+|++....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999988754
No 116
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.07 E-value=0.048 Score=45.52 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999998754
No 117
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.02 E-value=0.047 Score=46.92 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.2
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999998864
No 118
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.01 E-value=0.048 Score=46.23 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|++|+|||+|++....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 358999999999999999998764
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.97 E-value=0.074 Score=47.90 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=28.6
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc--cC--------CcEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK--LS--------NRSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~--~~--------p~~v~~~G~~s 382 (420)
+|. -++|+|+||+|||+|++.++. +. -+.+|+++..+
T Consensus 23 ~G~-~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 23 TGS-ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp TTS-EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CCe-EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 344 488999999999999998877 33 25688888774
No 120
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.95 E-value=0.05 Score=47.19 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=22.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|+||+|||.|++....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4568999999999999999998765
No 121
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.93 E-value=0.052 Score=47.03 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.1
Q ss_pred ccCcccEEEEcCCCchhhHHHH-HHhc
Q 014661 344 VRGESHLLLVGDPGTGKSQFLK-FAAK 369 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSqlL~-~~~~ 369 (420)
....++|+++|+||+|||.|++ ++..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999995 4443
No 122
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.91 E-value=0.049 Score=45.29 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.3
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|++|+|||.|++....
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999998754
No 123
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.83 E-value=0.054 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.7
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..|.++|+||+|||.|++....-
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998754
No 124
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.81 E-value=0.055 Score=48.83 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=27.3
Q ss_pred cCcccEEEEcCCCchhhHH-HHHHhccC---CcEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQF-LKFAAKLS---NRSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSql-L~~~~~~~---p~~v~~~G~~s 382 (420)
+|. -+++.|+||+|||+| ++.+..++ -+.+|+++..+
T Consensus 22 ~G~-~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERN-VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTC-EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCc-EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 444 488999999999999 55655554 36788887754
No 125
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.78 E-value=0.05 Score=47.13 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=22.6
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHhc
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..+..++|+++|+||+|||.|++....
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHc
Confidence 345579999999999999999988764
No 126
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.77 E-value=0.052 Score=46.65 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=19.9
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
++|+++|+||+|||.|++....-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 47999999999999999887643
No 127
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.77 E-value=0.054 Score=47.27 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.1
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|++|+|||.|+++...
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4468999999999999999998765
No 128
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.77 E-value=0.056 Score=46.44 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+..++|+++|+||+|||.|++....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4468999999999999999998754
No 129
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.74 E-value=0.065 Score=46.91 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.8
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
+.++++|++|+|||+|++......
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 689999999999999999988764
No 130
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.73 E-value=0.057 Score=47.49 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=20.5
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHh
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
..+..++|+++|+||+|||.|++...
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHH
Confidence 34566899999999999999998876
No 131
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.72 E-value=0.043 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999997654
No 132
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.71 E-value=0.055 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.4
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|+||+|||.|++....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 3358999999999999999987754
No 133
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.69 E-value=0.065 Score=45.48 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.5
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
....+|+++|+||+|||.|++....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999998754
No 134
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.68 E-value=0.061 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999998763
No 135
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.64 E-value=0.059 Score=46.11 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.0
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 358999999999999999998763
No 136
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.64 E-value=0.057 Score=48.05 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=20.7
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHhc
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.....++|+++|+||+|||.|++....
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhc
Confidence 345579999999999999999987654
No 137
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.63 E-value=0.058 Score=45.88 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|+||+|||.|++....
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 4468999999999999999988754
No 138
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.63 E-value=0.06 Score=45.57 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..|.++|+||+|||.|++.....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999988764
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.63 E-value=0.095 Score=51.84 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=28.8
Q ss_pred ccCcccEEEEcCCCchhhHHHHHH--hccCCc--------EEEEecccc
Q 014661 344 VRGESHLLLVGDPGTGKSQFLKFA--AKLSNR--------SVITTGLGS 382 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSqlL~~~--~~~~p~--------~v~~~G~~s 382 (420)
.+|.+ ++|+|+||+|||+|++.. .-+.|. .+|++|..+
T Consensus 176 ~~Gei-~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 176 ETGSI-TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp ETTSE-EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CCCcE-EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 35555 899999999999999943 444443 789998875
No 140
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.63 E-value=0.057 Score=45.72 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=20.1
Q ss_pred cccEEEEcCCCchhhHHHHHHh
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
.++|+++|++|+|||.|++...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4899999999999999999875
No 141
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.059 Score=46.50 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.6
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|+||+|||.|++....
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3458999999999999999998754
No 142
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.59 E-value=0.058 Score=45.95 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=20.9
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 358999999999999999988754
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.59 E-value=0.089 Score=50.68 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=39.6
Q ss_pred CcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC-------CcEEEEecc
Q 014661 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS-------NRSVITTGL 380 (420)
Q Consensus 314 P~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~-------p~~v~~~G~ 380 (420)
..++|.+.....+.-.+-.... + +..-+++|.|.||+|||.|++.+++.. ...+|+++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~-----~---~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR-----E---EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG-----T---CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----C---CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 4578988887766554432111 0 112379999999999999999988764 234666643
No 144
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.54 E-value=0.058 Score=45.77 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.3
Q ss_pred CcccEEEEcCCCchhhHHHHHHhcc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..++|+++|++|+|||.|++....-
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3578999999999999999887643
No 145
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.53 E-value=0.059 Score=45.74 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=20.8
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 457999999999999999997653
No 146
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.52 E-value=0.065 Score=46.73 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.6
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|+||+|||.|++....
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 4468999999999999999998753
No 147
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.48 E-value=0.18 Score=44.73 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.7
Q ss_pred cEEEEcCCCchhhHHHHH
Q 014661 349 HLLLVGDPGTGKSQFLKF 366 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~ 366 (420)
..|+.|.||+|||.+...
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 578999999999998655
No 148
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.45 E-value=0.064 Score=46.86 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred cccEEEEcCCCchhhHHHHHHh
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
.+.|+|+|+||+|||.|++...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999998765
No 149
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.45 E-value=0.062 Score=46.57 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.1
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
...++|+++|+||+|||.|++...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 445899999999999999997654
No 150
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.43 E-value=0.064 Score=46.71 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.1
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 358999999999999999988754
No 151
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.43 E-value=0.067 Score=46.26 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.+.++|+++|+||+|||.|++....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3458999999999999999998764
No 152
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.43 E-value=0.066 Score=46.68 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=20.8
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHhc
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.....++|+++|++|+|||.|++....
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHh
Confidence 345578999999999999999987754
No 153
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.42 E-value=0.054 Score=46.27 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.2
Q ss_pred CcccEEEEcCCCchhhHHHHHHh
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
..++|+++|+||+|||+|++...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45799999999999999998754
No 154
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.41 E-value=0.063 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.8
Q ss_pred cccEEEEcCCCchhhHHHHHHh
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
.++|+++|+||+|||.|++...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999998775
No 155
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.40 E-value=0.061 Score=48.17 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
...+.|+|+|+||+|||.|++...
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 445889999999999999998765
No 156
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.38 E-value=0.067 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.9
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999988764
No 157
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.36 E-value=0.065 Score=45.73 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=20.0
Q ss_pred cccEEEEcCCCchhhHHHHHHh
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
.++|+++|+||+|||.|++...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 5789999999999999998876
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.30 E-value=0.056 Score=51.77 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=27.2
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC---------C--cEEEEeccc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS---------N--RSVITTGLG 381 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~---------p--~~v~~~G~~ 381 (420)
-++||.|.||||||.+.+++++-. | .-+|++|..
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 379999999999999999997654 1 456777765
No 159
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.28 E-value=0.067 Score=46.40 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+..++|+++|+||+|||.|++....
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhc
Confidence 4458999999999999999998764
No 160
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.28 E-value=0.069 Score=44.39 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.6
Q ss_pred cEEEEcCCCchhhHHHHHHhcc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~ 370 (420)
+|+++|++|+|||.|++....-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999987654
No 161
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.27 E-value=0.067 Score=45.81 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.6
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999998764
No 162
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.27 E-value=0.066 Score=46.12 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.7
Q ss_pred CcccEEEEcCCCchhhHHHHHHhcc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..+.|+++|+||+|||.|++....-
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999987654
No 163
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.25 E-value=0.084 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.2
Q ss_pred cccEEEEcCCCchhhHHHHHHhcc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.+.|+++|++|+|||.|++....-
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999988653
No 164
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.25 E-value=0.08 Score=45.85 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=22.5
Q ss_pred ccCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 344 VRGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..-.++|+++|+||+|||.|++....-
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcC
Confidence 344589999999999999999987643
No 165
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.23 E-value=0.066 Score=46.89 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
...+.|+++|+||+|||.|++...
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999999874
No 166
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.21 E-value=0.074 Score=47.08 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=22.6
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
...++|+++|+||+|||.|+.....-.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345899999999999999998876543
No 167
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.20 E-value=0.075 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.1
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|++|+|||.|++....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 358999999999999999998764
No 168
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.20 E-value=0.1 Score=47.86 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=21.1
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+|+|+||+|||+|+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 3458999999999999999998753
No 169
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.19 E-value=0.089 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.2
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
-.++|+++|++|+|||.|++....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 358999999999999999988764
No 170
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.19 E-value=0.11 Score=50.35 Aligned_cols=49 Identities=18% Similarity=0.082 Sum_probs=33.2
Q ss_pred CcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 314 P~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..++|++.....+.-.|-.-.. + +..-++||.|.||||||.|++.+++-
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~-----~---~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK-----N---EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT-----T---CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----C---CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4578988877665543322100 0 01128999999999999999999875
No 171
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.16 E-value=0.073 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.1
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
+..++|+++|+||+|||.|++...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 446899999999999999999874
No 172
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.14 E-value=0.07 Score=45.69 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.4
Q ss_pred CcccEEEEcCCCchhhHHHHHHh
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
..++|+++|+||+|||.|++...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 35899999999999999998775
No 173
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.12 E-value=0.069 Score=46.35 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.1
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
-.++|+++|+||+|||.|++....
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhc
Confidence 358999999999999999988754
No 174
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.11 E-value=0.073 Score=45.97 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.5
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 48999999999999999988754
No 175
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.11 E-value=0.075 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.4
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999988754
No 176
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.10 E-value=0.068 Score=50.85 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=21.8
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-+++|.|+||||||.|+++++.-+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999876554
No 177
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.06 E-value=0.076 Score=45.83 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=20.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
...++|+++|+||+|||.|++...
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHH
Confidence 345899999999999999998875
No 178
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.04 E-value=0.087 Score=45.98 Aligned_cols=27 Identities=33% Similarity=0.472 Sum_probs=21.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
+..++|+++|+||+|||.|++....-.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 445899999999999999999876543
No 179
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.03 E-value=0.055 Score=66.02 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=20.3
Q ss_pred cccEEEEcCCCchhhHHHHHHhccCCc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
.-|+||+|+||||||.+++.+.+-.|.
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~ 1330 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPD 1330 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCC
Confidence 358999999999999888654433333
No 180
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.03 E-value=0.082 Score=46.55 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=25.8
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~~ 381 (420)
.+.|+|.||+|||++++.++.... .+++.|..
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g-~~~i~~d~ 62 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETG-LEFAEADA 62 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC-CEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC-CeEEcccc
Confidence 588999999999999999988764 46666653
No 181
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.01 E-value=0.077 Score=46.36 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.2
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+..++|+++|+||+|||.|++....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHc
Confidence 4468999999999999999988754
No 182
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.98 E-value=0.083 Score=45.64 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=23.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
+..++|+++|++|+|||.|+.....-.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445799999999999999999887654
No 183
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.95 E-value=0.078 Score=45.71 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.6
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|++|+|||+|++....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECcCCCCHHHHHHHHHc
Confidence 47999999999999999998754
No 184
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.94 E-value=0.071 Score=45.76 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=21.5
Q ss_pred ccCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 344 VRGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
....++|+++|++|+|||.|++....-
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 344689999999999999999988654
No 185
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.90 E-value=0.076 Score=46.54 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.0
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999998754
No 186
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.90 E-value=0.073 Score=46.27 Aligned_cols=24 Identities=17% Similarity=0.438 Sum_probs=21.0
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|++|+|||.|++....
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 358899999999999999998754
No 187
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.83 E-value=0.084 Score=45.61 Aligned_cols=25 Identities=44% Similarity=0.468 Sum_probs=21.5
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|+||+|||.|++....
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3458999999999999999998764
No 188
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.83 E-value=0.052 Score=46.44 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=11.1
Q ss_pred cccEEEEcCCCchhhHHHHHHh
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
.++|+++|+||+|||.|++...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~ 29 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFS 29 (183)
T ss_dssp EEEEEEECCCCC----------
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999998764
No 189
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.81 E-value=0.11 Score=45.82 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.1
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
-.++|+++|+||+|||.|++....
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHhc
Confidence 358999999999999999988764
No 190
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.78 E-value=0.083 Score=46.62 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=19.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+..++|+++|+||+|||.|++....
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457999999999999999987653
No 191
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.78 E-value=0.089 Score=45.81 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.6
Q ss_pred cccEEEEcCCCchhhHHHHHHhccCC
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.+.+.|+|++|+|||+|++.......
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 37899999999999999999877653
No 192
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.78 E-value=0.14 Score=46.17 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=26.6
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh--cc---CCcEEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA--KL---SNRSVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~--~~---~p~~v~~~G~~ 381 (420)
+|.+ ++|+|+||+|||+|++.++ .+ .-..+|.++..
T Consensus 29 ~G~~-~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 29 EGTT-VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TTCE-EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCcE-EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 4555 7789999999999999877 33 33556777654
No 193
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.71 E-value=0.1 Score=44.57 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=24.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|+|+|-||+|||++.+..++-.+..++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 5899999999999999999987765544
No 194
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.71 E-value=0.085 Score=46.21 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.4
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|++|+|||.|++....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3458999999999999999998753
No 195
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.70 E-value=0.084 Score=45.89 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.0
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998764
No 196
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.65 E-value=0.075 Score=45.82 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.2
Q ss_pred CcccEEEEcCCCchhhHHHHHHh
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
..++|+++|+||+|||.|++...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999764
No 197
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.64 E-value=0.081 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|++|+|||.|++....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4468999999999999999997654
No 198
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.57 E-value=0.096 Score=45.05 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
....+|+++|++|+|||.|++....-
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 45578999999999999999987543
No 199
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.57 E-value=0.098 Score=44.65 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-+.|+|+.|.|||+|+|.++.+.|
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 488999999999999999999876
No 200
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.48 E-value=0.09 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.8
Q ss_pred cccEEEEcCCCchhhHHHHHHh
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
.++|+++|+||+|||.|++...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHH
Confidence 4799999999999999999764
No 201
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.42 E-value=0.092 Score=46.43 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.2
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
-.+.|+++|+||+|||.|++....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999998765
No 202
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.39 E-value=0.11 Score=45.61 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.2
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|+||+|||.|++....
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 3458999999999999999987753
No 203
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.38 E-value=0.11 Score=44.41 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=24.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~ 380 (420)
.++|+|.||+|||++++..+.... .++++|.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g-~~~i~~d 40 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLH-AAFLDGD 40 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT-CEEEEGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhC-cEEEeCc
Confidence 589999999999999999987653 3555554
No 204
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.38 E-value=0.094 Score=46.52 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.7
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 58999999999999999998764
No 205
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.33 E-value=0.095 Score=45.89 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.8
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999988765
No 206
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.30 E-value=0.1 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
++||.|+||||||.|.+++++..+.
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 7999999999999999999987654
No 207
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.28 E-value=0.11 Score=44.56 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=24.4
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
+|+|+|.||+|||++.+..++-....++-+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 699999999999999999887666544433
No 208
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.25 E-value=0.1 Score=45.94 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.2
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|+||+|||.|++....
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 358999999999999999977653
No 209
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.24 E-value=0.098 Score=45.90 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.5
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+++|+||+|||.|++....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 48999999999999999988754
No 210
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.22 E-value=0.11 Score=44.62 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=26.5
Q ss_pred cccEEEEcCCCchhhHHHHHHhccCCcEEEEec
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G 379 (420)
..+|+|+|-||+|||++.+..++-....++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 357999999999999999999877665555444
No 211
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.17 E-value=0.11 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.8
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-+.|+|.+|+|||+|++......|
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998776
No 212
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.05 E-value=0.11 Score=45.76 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=23.8
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
+|+|+|.||+|||++.+..++.....++
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 6999999999999999999877655444
No 213
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.04 E-value=0.11 Score=45.05 Aligned_cols=25 Identities=28% Similarity=0.208 Sum_probs=21.4
Q ss_pred CcccEEEEcCCCchhhHHHHHHhcc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..++|+++|++|+|||.|++....-
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4589999999999999999887643
No 214
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.02 E-value=0.1 Score=45.84 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.0
Q ss_pred cccEEEEcCCCchhhHHHHHHhcc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.++|+++|++|+|||.|++....-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999987653
No 215
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.01 E-value=0.047 Score=59.10 Aligned_cols=60 Identities=25% Similarity=0.257 Sum_probs=39.5
Q ss_pred cccCCHHHHHHHHHHHhcCceeeCC-CCCcccCcccEEEEcCCCchhhHHHHHHhccCCcE
Q 014661 315 QVFGLFTVKLAVALTLIGGVQHVDA-SGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (420)
Q Consensus 315 ~i~G~~~~K~ailL~L~gg~~~~~~-~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~ 374 (420)
.|.|++.+|..+.-.+.-....... ....++..-|+||+|.||||||.|.+.++......
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678899998776554322211100 01122334579999999999999999999887543
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.99 E-value=0.26 Score=46.19 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+..+.++++|.||+|||+|++....
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCceEEEEecCCCchHHHHHHHhc
Confidence 4568999999999999999998753
No 217
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.99 E-value=0.17 Score=43.11 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=23.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
.|+|+|-||+|||++.+..++-.....+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 589999999999999999987222344443
No 218
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.98 E-value=0.11 Score=46.26 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=26.0
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEEecc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~ 380 (420)
..|.|+|.||+|||++++..++...-.+..+|.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~ 38 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA 38 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence 369999999999999999998865544444443
No 219
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.90 E-value=0.1 Score=44.87 Aligned_cols=20 Identities=40% Similarity=0.629 Sum_probs=17.0
Q ss_pred CcccEEEEcCCCchhhHHHHH
Q 014661 346 GESHLLLVGDPGTGKSQFLKF 366 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~ 366 (420)
|.+ +.|+|.+|+|||+|++.
T Consensus 9 gei-~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSL-VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEE-EEEECCTTSCHHHHHHH
T ss_pred CEE-EEEECCCCCCHHHHHHH
Confidence 444 78899999999999994
No 220
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=90.85 E-value=0.11 Score=46.68 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=18.3
Q ss_pred cccEEEEcCCCchhhHHHHHH
Q 014661 347 ESHLLLVGDPGTGKSQFLKFA 367 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~ 367 (420)
...|+|+||+|+|||.|+..-
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~ 33 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRF 33 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEEECcCCcCHHHHHHHH
Confidence 368999999999999999754
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.79 E-value=0.093 Score=48.94 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.9
Q ss_pred cccEEEEcCCCchhhHHHHHHhccCC
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
+.++.++|.+|.|||+||+....+.+
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987653
No 222
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.77 E-value=0.11 Score=44.95 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=21.0
Q ss_pred ccCcccEEEEcCCCchhhHHHHHHhc
Q 014661 344 VRGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
-....+|+++|++|+|||.|++....
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 34557899999999999999997654
No 223
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.71 E-value=0.14 Score=45.47 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=23.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
+|+|+|.||+|||++.+..++-....++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 589999999999999999866555444433
No 224
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.15 Score=45.49 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.0
Q ss_pred cccEEEEcCCCchhhHHHHHHhcc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.++|+++|+||+|||.|++....-
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 479999999999999999887643
No 225
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.69 E-value=0.2 Score=44.06 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=25.4
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
..|.|+|.||+|||++++..++..+...+++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 4589999999999999999999875444443
No 226
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.61 E-value=0.11 Score=51.88 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.6
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
-+++|.|+||+|||.|++.+++..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999998765
No 227
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.58 E-value=0.29 Score=44.82 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=26.9
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCc-EEEEecc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNR-SVITTGL 380 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~-~v~~~G~ 380 (420)
..|+|+|.||+|||++.+..++..+. .++++|-
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D 66 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGD 66 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecH
Confidence 47999999999999999999887653 4566664
No 228
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.53 E-value=0.1 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.0
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.+.|+++|+||+|||.|++....
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999997753
No 229
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=90.52 E-value=0.13 Score=48.74 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=19.4
Q ss_pred cccEEEEcCCCchhhHHHHHHh
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
.+.|+|+|+||+|||.|++...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~ 24 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIF 24 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999743
No 230
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.51 E-value=0.13 Score=44.27 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=23.4
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
+|+|+|.||+|||++.+..++-....++
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999876554444
No 231
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.46 E-value=0.15 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccC-C
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS-N 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~-p 372 (420)
.+.|+|.||+|||++++..+... |
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 58899999999999999999887 5
No 232
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.39 E-value=0.12 Score=45.80 Aligned_cols=22 Identities=50% Similarity=0.755 Sum_probs=19.8
Q ss_pred cCcccEEEEcCCCchhhHHHHH
Q 014661 345 RGESHLLLVGDPGTGKSQFLKF 366 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~ 366 (420)
...++|+++|+||+|||.|++.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~ 34 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKR 34 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTT
T ss_pred ccceEEEEECCCCCCHHHHHHH
Confidence 4458999999999999999997
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.38 E-value=0.18 Score=54.32 Aligned_cols=59 Identities=29% Similarity=0.315 Sum_probs=37.3
Q ss_pred cccCCHHH----HHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 315 QVFGLFTV----KLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 315 ~i~G~~~~----K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
+|-|++.+ +..+.+-|.-- .....-| ++-.-+|||.|.||||||.|.|++++-+...++
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p-~~f~~~g--~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~ 267 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHP-ALFKAIG--VKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCC-GGGTSCC--CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEE
T ss_pred hhcCHHHHHHHHHHHHHHHccCH-HHHhhcC--CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 46676654 45555544321 1111112 223347999999999999999999988766555
No 234
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.36 E-value=0.084 Score=46.35 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.1
Q ss_pred cccEEEEcCCCchhhHHHHHHhccC
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
...+.|+|+||+|||+|++......
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999877654
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.27 E-value=0.14 Score=44.35 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=23.7
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc-CCcEEE
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL-SNRSVI 376 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~-~p~~v~ 376 (420)
.+|+|+|-||+|||++.+..++. ....++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 47999999999999999999887 443343
No 236
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.26 E-value=0.15 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.0
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
++|.|+|+||+|||+|++......
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999886553
No 237
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.21 E-value=0.09 Score=46.52 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=20.5
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
...++|+++|+||+|||.|++...
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCT
T ss_pred cCccEEEEECCCCCCHHHHHHHHh
Confidence 346899999999999999998765
No 238
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.19 E-value=0.17 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.1
Q ss_pred cEEEEcCCCchhhHHHHHHh---ccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAA---KLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~---~~~p 372 (420)
.+.|+|.||+|||+|++.++ .+.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 69999999999999999998 5543
No 239
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.19 E-value=0.34 Score=42.21 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=18.0
Q ss_pred CcccEEEEcCCCchhhHHH-HHHhcc
Q 014661 346 GESHLLLVGDPGTGKSQFL-KFAAKL 370 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL-~~~~~~ 370 (420)
|.+ +++.|+||+|||++| +.+.+.
T Consensus 3 g~i-~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKL-TVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCE-EEEEESTTSSHHHHHHHHHHHH
T ss_pred cEE-EEEECCCCCCHHHHHHHHHHHH
Confidence 344 568999999999986 555544
No 240
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.17 E-value=0.13 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.5
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.++|+|+|+||+|||+|++....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 47899999999999999998764
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.10 E-value=0.19 Score=42.36 Aligned_cols=28 Identities=43% Similarity=0.689 Sum_probs=22.2
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
.|+|+|.||+|||++.+.. +-....++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 5899999999999999999 444444444
No 242
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.09 E-value=0.15 Score=43.22 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=23.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
||+|.|-||+|||++.+..++-....++-
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 79999999999999999988754444443
No 243
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.06 E-value=0.19 Score=48.76 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=28.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC----CcEEEEeccccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS----NRSVITTGLGST 383 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~----p~~v~~~G~~ss 383 (420)
+|. -++|.|+||+|||+|+..++..+ -+.+|+++..+.
T Consensus 60 ~G~-i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGR-IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp TTE-EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CCc-EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 444 48899999999999988876553 346799887653
No 244
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.04 E-value=0.15 Score=43.05 Aligned_cols=25 Identities=20% Similarity=0.017 Sum_probs=21.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
.|.|+|.||+|||++.+..++...-
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999998876543
No 245
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.98 E-value=0.16 Score=45.49 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=20.7
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
....|+++|+||+|||.|+.....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999997654
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.84 E-value=0.19 Score=44.97 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=24.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
-+.|+|.+|.|||+|++.++.+.|-.++.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~pG~i~~ 53 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFPNYFYF 53 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCcEEE
Confidence 37899999999999999999988723444
No 247
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.82 E-value=0.074 Score=46.38 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=7.1
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|+++|+||+|||.|++....
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEEEC----------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHh
Confidence 3458999999999999999986653
No 248
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.77 E-value=0.32 Score=42.00 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=19.2
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
-+.++|.+|+|||+|+....+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 37899999999999998876543
No 249
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=89.77 E-value=0.15 Score=47.29 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.6
Q ss_pred CcccEEEEcCCCchhhHHHHHH
Q 014661 346 GESHLLLVGDPGTGKSQFLKFA 367 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~ 367 (420)
.+++|+++|.||+|||+|+...
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSL 28 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHH
Confidence 3689999999999999999863
No 250
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.75 E-value=0.17 Score=44.72 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=25.4
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
+|.+ +.|+|.+|.|||+|++.++.+.|. ++..
T Consensus 19 ~Gei-~~l~GpnGsGKSTLl~~l~gl~~~-i~~~ 50 (207)
T 1znw_A 19 VGRV-VVLSGPSAVGKSTVVRCLRERIPN-LHFS 50 (207)
T ss_dssp CCCE-EEEECSTTSSHHHHHHHHHHHSTT-CEEC
T ss_pred CCCE-EEEECCCCCCHHHHHHHHHhhCCc-eEEc
Confidence 4444 778899999999999999999873 4433
No 251
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.70 E-value=0.16 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.638 Sum_probs=20.6
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
+.|.|+|+||+|||.|++....-
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999988753
No 252
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=89.59 E-value=0.26 Score=38.68 Aligned_cols=29 Identities=38% Similarity=0.928 Sum_probs=21.0
Q ss_pred EEEEecCCCceeeeccccccccceecCCCCCCCCCCCCCCCc
Q 014661 147 RTYMCRKCKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGTN 188 (420)
Q Consensus 147 ~~f~C~~C~~~~~~~~~~~~~~~~~~P~~C~~~~~~~C~~~~ 188 (420)
.-|+|.+||+.|. .....|.+||. |++.+
T Consensus 66 ~p~~C~~CG~~F~--------~~~~kPsrCP~-----CkSe~ 94 (105)
T 2gmg_A 66 KPAQCRKCGFVFK--------AEINIPSRCPK-----CKSEW 94 (105)
T ss_dssp CCCBBTTTCCBCC--------CCSSCCSSCSS-----SCCCC
T ss_pred ECcChhhCcCeec--------ccCCCCCCCcC-----CCCCc
Confidence 3489999998861 23567999995 77653
No 253
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.53 E-value=0.46 Score=44.88 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=38.6
Q ss_pred CcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEEEecccc
Q 014661 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS 382 (420)
Q Consensus 314 P~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~~s 382 (420)
+.++|.+.....+.=.+-.| -++++.|.+|+|||.|++.+.+-.+ .+|++..+.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--------------~~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~~~~~~ 65 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--------------PLTLLLGIRRVGKSSLLRAFLNERP-GILIDCREL 65 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--------------SEEEEECCTTSSHHHHHHHHHHHSS-EEEEEHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--------------CeEEEECCCcCCHHHHHHHHHHHcC-cEEEEeecc
Confidence 45788877655544333221 2799999999999999999887665 788876543
No 254
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.35 E-value=0.19 Score=45.37 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=26.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
.+.|+|..|+|||+||+.++.+.+. .|+..|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 67 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKE 67 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 3778999999999999999998763 25555543
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.34 E-value=0.38 Score=46.36 Aligned_cols=37 Identities=14% Similarity=0.049 Sum_probs=28.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhcc--C--------CcEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKL--S--------NRSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~--~--------p~~v~~~G~~s 382 (420)
+|. -+++.|+||+|||+|+...+.- . -+.+|+++.++
T Consensus 121 ~G~-i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 121 SMA-ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SSE-EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 444 4889999999999998876552 2 35789888775
No 256
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.30 E-value=0.16 Score=48.12 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.1
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+++|+|+|++|+|||+||+....
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999654
No 257
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.28 E-value=0.17 Score=44.73 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=22.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
+|+|.|.||+|||++.+..++-..-.++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 589999999999999998865444434433
No 258
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.17 E-value=0.17 Score=43.49 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=23.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEec
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G 379 (420)
.|+|+|-||+|||++.+..++-....++.+|
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~~d 36 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLSTG 36 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence 5999999999999999998764444344333
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.08 E-value=0.17 Score=44.62 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.+.|+|.+|.|||+|++.+..+.|
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 588999999999999999988766
No 260
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.07 E-value=0.23 Score=46.58 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=25.6
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC-cEEEEec
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN-RSVITTG 379 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p-~~v~~~G 379 (420)
..|+|+|.||+|||++.+..++-.| ..+++++
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 4699999999999999999877554 4466665
No 261
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=89.06 E-value=0.19 Score=46.70 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.1
Q ss_pred cccEEEEcCCCchhhHHHHHHhcc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.++|+++|+||+|||.|++....-
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999987654
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=89.05 E-value=0.27 Score=45.93 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=27.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
+|.+ +.|+|..|.|||+||+.++.+.+. .|+..|..
T Consensus 33 ~Ge~-~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~ 71 (275)
T 3gfo_A 33 RGEV-TAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP 71 (275)
T ss_dssp TTSE-EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCCE-EEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE
Confidence 3444 789999999999999999998754 35555543
No 263
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.01 E-value=0.23 Score=42.02 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=23.3
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|+|+|-||+|||++.+..++.....++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999886554444
No 264
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.00 E-value=0.2 Score=43.93 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.9
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
..|+|+|.||+|||++.+..++...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999987654
No 265
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.88 E-value=0.23 Score=45.36 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=27.1
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
=.+.|+|.+|.|||+|||.++.+.+. .|+..|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 61 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD 61 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE
Confidence 35789999999999999999999753 35556643
No 266
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=88.50 E-value=0.08 Score=46.39 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.4
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
+..++|+++|+||+|||.|++...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 345899999999999999997654
No 267
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.82 E-value=0.2 Score=43.52 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.3
Q ss_pred EEEEcCCCchhhHHHHHHhccCC
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~p 372 (420)
+.|+|.+|.|||+|++.+..+.|
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999998887
No 268
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.80 E-value=0.21 Score=44.27 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=25.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC----CcEEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS----NRSVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~----p~~v~~~G~~ 381 (420)
+|.+ ++|+|+||+|||+|++..+... -+..|.+...
T Consensus 22 ~G~~-~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFF-IALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp TTCE-EEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCCE-EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 4444 7889999999999999887432 2445655443
No 269
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.77 E-value=0.2 Score=51.34 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=27.2
Q ss_pred cEEEEcCCCchhhHHHHH--HhccCC---cEEEEecccc
Q 014661 349 HLLLVGDPGTGKSQFLKF--AAKLSN---RSVITTGLGS 382 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~--~~~~~p---~~v~~~G~~s 382 (420)
.++|+|+||+|||+|++. ++.+.+ ..+|++|..+
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET 79 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 478899999999999998 455543 5799998763
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.73 E-value=0.22 Score=43.84 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
-|.|+|.||+|||+|.+..++..|.
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCcc
Confidence 5899999999999999999877663
No 271
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.72 E-value=0.3 Score=52.54 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=39.9
Q ss_pred ccCCHHHHHHHHHHHhcCcee---eCCCCCcccCcccEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 316 VFGLFTVKLAVALTLIGGVQH---VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 316 i~G~~~~K~ailL~L~gg~~~---~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
|-|++.+|+.+--.+.--... ....| .+-.-.+||.|.||||||.|.++++.-+...++.
T Consensus 479 iggl~~~k~~l~e~v~~p~~~p~~f~~~g--~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~ 541 (806)
T 3cf2_A 479 IGGLEDVKRELQELVQYPVEHPDKFLKFG--MTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCSCHHHHHHHTTTTTTTTTCSGGGSSSC--CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEE
T ss_pred hCCHHHHHHHHHHHHHhhhhCHHHHHhcC--CCCCceEEEecCCCCCchHHHHHHHHHhCCceEE
Confidence 458999998765443321111 01112 2333469999999999999999999988776553
No 272
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.65 E-value=0.22 Score=49.47 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=21.9
Q ss_pred cccEEEEcCCCchhhHHHHHHhccC
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
+++|.|+|++|+|||+|++......
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999988764
No 273
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=88.63 E-value=0.24 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=22.2
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
-+.|+|.+|+|||+|++..+...|.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3788999999999999999988764
No 274
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.54 E-value=0.23 Score=44.65 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.2
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCC
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
+|.+ +.|+|.+|+|||+|++.+..+.|
T Consensus 15 ~G~i-i~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTL-YIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCE-EEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcE-EEEECCCCCCHHHHHHHHhccCC
Confidence 4444 77899999999999999999877
No 275
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.53 E-value=0.22 Score=43.66 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.3
Q ss_pred cEEEEcCCCchhhHHHHHHhcc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.|.|+|.||+|||++++..+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 5899999999999999999984
No 276
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.49 E-value=0.2 Score=44.27 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.+.|+|.+|.|||+|++.++.+.+
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999998875
No 277
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=88.48 E-value=0.23 Score=48.03 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.2
Q ss_pred cEEEEcCCCchhhHHHHHHhc--cCCcE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAK--LSNRS 374 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~--~~p~~ 374 (420)
.|.+||++|+|||.||+.... +.|++
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~ 63 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRG 63 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCC
Confidence 799999999999999999987 66764
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.46 E-value=0.22 Score=45.37 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
.+.|+|..|+|||+||+.++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4889999999999999999999863
No 279
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.45 E-value=0.25 Score=44.34 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=27.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEecc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGL 380 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~ 380 (420)
+|++ +.|+|..|.|||+||+.++.+.+. .|+..|.
T Consensus 34 ~Ge~-~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 71 (214)
T 1sgw_A 34 KGNV-VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV 71 (214)
T ss_dssp TTCC-EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred CCCE-EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE
Confidence 3444 778999999999999999998753 3555554
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.43 E-value=0.22 Score=42.79 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.|+|+|-||+|||++.+..++-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999887554
No 281
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.40 E-value=0.25 Score=44.92 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=26.2
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~ 380 (420)
.+.|+|..|.|||+||+.++.+.+. .|+..|.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 67 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNI 67 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCE
Confidence 4889999999999999999998864 3555554
No 282
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.37 E-value=0.28 Score=50.21 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=27.5
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCC----cEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p----~~v~~~G~~s 382 (420)
+|. .++|+|+||+|||+|++..+...+ +.+|.++..+
T Consensus 280 ~G~-i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~ 320 (525)
T 1tf7_A 280 KDS-IILATGATGTGKTLLVSRFVENACANKERAILFAYEES 320 (525)
T ss_dssp SSC-EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred CCc-EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 444 489999999999999998876553 3467766543
No 283
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.31 E-value=0.26 Score=43.81 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=24.1
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
..|+|+|-||+|||++.+..++-....++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 479999999999999999988765544443
No 284
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.30 E-value=0.24 Score=47.48 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=23.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhcc-CCcEEEEec
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKL-SNRSVITTG 379 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~-~p~~v~~~G 379 (420)
+|.+ +||.|+||+|||+|...++.- --+..|++.
T Consensus 122 ~gsv-iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGM-VIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEE-EEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcE-EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4444 689999999999998887653 123355554
No 285
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.28 E-value=0.24 Score=42.58 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.2
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.|+|.|-||+|||++.+..++-.+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999988443
No 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.26 E-value=0.26 Score=45.50 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=27.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
+|. .+.|+|..|+|||+|||.++.+.+. .|+..|..
T Consensus 32 ~Ge-~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~ 70 (257)
T 1g6h_A 32 KGD-VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKD 70 (257)
T ss_dssp TTC-EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence 444 4788999999999999999998763 35556643
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.26 E-value=0.23 Score=43.56 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=25.2
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc----EEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~----~v~~~G~ 380 (420)
.|.|+|.+|+|||++++.++...+. .+|..|.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 5889999999999999999887631 1366664
No 288
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.25 E-value=0.26 Score=45.23 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=26.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
.+.|+|..|.|||+||+.++.+.+. .|+..|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~ 72 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 72 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3789999999999999999999764 35556543
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.25 E-value=0.24 Score=42.77 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.9
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
..|+|+|-||+|||++.+..++-.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 369999999999999999987744
No 290
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.24 E-value=0.25 Score=42.75 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=23.7
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
..|.|+|-||+|||++.+..++-....++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 38 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHL 38 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 36999999999999999999875554444
No 291
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.21 E-value=0.24 Score=43.06 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
.|.|+|.||+|||++.+..++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999885544
No 292
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.19 E-value=0.18 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.0
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|++|+|||.|++....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 457899999999999999998754
No 293
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=88.12 E-value=0.24 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=19.5
Q ss_pred cEEEEcCCCchhhHHHHHHhcc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~ 370 (420)
+|.|+|+||+|||+|++....-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999987654
No 294
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.08 E-value=0.26 Score=45.59 Aligned_cols=33 Identities=30% Similarity=0.595 Sum_probs=26.2
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
-+.|+|..|.|||+||+.++.+.+. .|+..|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~ 69 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN 69 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3788999999999999999999763 35555543
No 295
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=88.07 E-value=0.25 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.1
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|++|+|||.|+.....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 457999999999999999998754
No 296
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.02 E-value=0.26 Score=42.39 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=23.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
.|+|+|-||+|||++.+..++...-.++-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48999999999999999988754443443
No 297
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.01 E-value=0.23 Score=44.03 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=23.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
+|+|+|-||+|||++.+..++-....++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 589999999999999999887444444444
No 298
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.94 E-value=0.27 Score=44.10 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=24.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
.|+|+|-||+|||++.+..++-....++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 589999999999999999887555445544
No 299
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.94 E-value=0.25 Score=43.35 Aligned_cols=23 Identities=35% Similarity=0.749 Sum_probs=20.8
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.+.|+|.+|+|||+|++.++.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999998775
No 300
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.94 E-value=0.26 Score=44.37 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=25.7
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEEec
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G 379 (420)
.+|+|+|-||+|||++.+..++-....++.++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecHH
Confidence 57999999999999999998876555455443
No 301
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.92 E-value=0.31 Score=43.58 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=23.6
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
..|+|+|-||+|||++.+..++-....++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i 36 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHL 36 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 46999999999999999999865554444
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.91 E-value=0.28 Score=42.26 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=22.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|+|+|-||+|||++.+..++-....++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 5899999999999999988765443333
No 303
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=87.89 E-value=0.29 Score=43.34 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=23.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
+|.+ +.|+|.+|+|||+|++...+..|.
T Consensus 18 ~g~~-ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 18 GRKT-LVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp SCCE-EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCE-EEEECcCCCCHHHHHHHHHhhCCc
Confidence 4554 778999999999999999988773
No 304
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.89 E-value=0.27 Score=43.36 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=27.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhcc-CCcEEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKL-SNRSVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~-~p~~v~~~G~~ 381 (420)
+|.+ ++|+|+||+|||+|++..+.- .-+.+|+++..
T Consensus 19 ~G~~-~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVL-TQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSE-EEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEE-EEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4444 899999999999999988761 12567777665
No 305
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.88 E-value=0.28 Score=45.10 Aligned_cols=32 Identities=38% Similarity=0.475 Sum_probs=26.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc--EEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~--~v~~~G~ 380 (420)
.+.|+|..|.|||+||+.++.+.+. .|+..|.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~ 61 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQ 61 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCE
Confidence 4889999999999999999999864 3555554
No 306
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.76 E-value=0.29 Score=44.73 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=26.8
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
.+.|+|..|.|||+||+.++.+.+. .|+..|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 65 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 4889999999999999999999753 36666643
No 307
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.74 E-value=0.29 Score=44.28 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.6
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
+|. .+.|+|..|.|||+||+.++.+.+.
T Consensus 33 ~Ge-~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 33 RGQ-LLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCC-EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 344 4789999999999999999998763
No 308
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.70 E-value=0.28 Score=41.38 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=22.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|+|.|-||+|||++.+..++-....++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999999999885444344
No 309
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.69 E-value=0.27 Score=42.04 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=19.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|+|.|-||+|||++.+..++-....++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 6999999999999999998876555454
No 310
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.60 E-value=0.26 Score=43.14 Aligned_cols=30 Identities=30% Similarity=0.374 Sum_probs=23.8
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEE
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~ 377 (420)
..|+|+|-||+|||++.+..++-....++.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 469999999999999999988754443443
No 311
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.58 E-value=0.3 Score=45.50 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=26.4
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
.+.|+|..|.|||+||+.++.+.+. .|+..|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 82 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEP 82 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 4889999999999999999999753 35555543
No 312
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.52 E-value=0.31 Score=44.48 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=26.4
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
.+.|+|..|.|||+|||.++.+.+. .|+..|+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 69 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQD 69 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence 3788999999999999999998753 35556643
No 313
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.45 E-value=0.3 Score=45.25 Aligned_cols=36 Identities=33% Similarity=0.681 Sum_probs=27.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
+|.+ +.|+|..|.|||+||+.++.+.+. .|+..|+.
T Consensus 49 ~Gei-~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 87 (263)
T 2olj_A 49 EGEV-VVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGIN 87 (263)
T ss_dssp TTCE-EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCCE-EEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 3444 788999999999999999999863 35566643
No 314
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=87.45 E-value=0.27 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.5
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...|.++|+||+|||.|+.+...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCHHHHHHHHHC
Confidence 46899999999999999999853
No 315
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.42 E-value=0.44 Score=45.37 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=28.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhcc--CC--------cEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKL--SN--------RSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~--~p--------~~v~~~G~~s 382 (420)
+|. -+++.|+||+|||+|+...+.- .| +.+|+++.++
T Consensus 106 ~G~-i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 106 TRT-MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TTS-EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCc-EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 444 4899999999999998766542 23 6789988875
No 316
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.38 E-value=0.3 Score=42.35 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=23.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|.|+|-||+|||++.+..++-....++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 5999999999999999999876554443
No 317
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.35 E-value=0.53 Score=45.75 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=31.8
Q ss_pred CcccCCHHHHHHHHHHH----hcCceeeCCCCCcccCcccEEE--EcCCCchhhHHHHHHhccC
Q 014661 314 PQVFGLFTVKLAVALTL----IGGVQHVDASGTKVRGESHLLL--VGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 314 P~i~G~~~~K~ailL~L----~gg~~~~~~~g~~~Rg~ihiLl--vGdpg~gKSqlL~~~~~~~ 371 (420)
+.++|.+.....+.-.| ..|.. ...-++++ .|.||+|||.|++.+++-.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~---------~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAG---------LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSC---------BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCC---------CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 45789877555443333 22210 01127888 8999999999999987654
No 318
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.33 E-value=0.27 Score=46.71 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.+.|+|.+|+|||+||+.+..+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 58999999999999999999987
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.31 E-value=0.31 Score=41.88 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=22.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~ 376 (420)
.|+|+|.||+|||++.+..++-....++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 6999999999999999998875444444
No 320
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.29 E-value=0.37 Score=44.14 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=25.4
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~ 380 (420)
.|.|+|.+|+|||++++.+++...--.+.+|.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~ 60 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGA 60 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCc
Confidence 69999999999999999998555444555554
No 321
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.19 E-value=0.32 Score=44.81 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=23.6
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
+|++ +.|+|..|.|||+||+.++.+.+.
T Consensus 30 ~Ge~-~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 30 KGDI-LAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp TTCE-EEEECCSSSSHHHHHHHHTTSSCC
T ss_pred CCCE-EEEECCCCCCHHHHHHHHhCCCCC
Confidence 3444 789999999999999999998763
No 322
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.17 E-value=0.32 Score=45.06 Aligned_cols=32 Identities=38% Similarity=0.608 Sum_probs=25.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~ 380 (420)
.+.|+|..|.|||+||+.++.+.+. .|+..|.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~ 69 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE 69 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCE
Confidence 4788999999999999999999863 3555554
No 323
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.16 E-value=0.32 Score=44.85 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=27.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
+|++ +.|+|..|.|||+||+.++.+.+. .|+..|..
T Consensus 40 ~Gei-~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 78 (256)
T 1vpl_A 40 EGEI-FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN 78 (256)
T ss_dssp TTCE-EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CCcE-EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE
Confidence 4444 788999999999999999999753 25555543
No 324
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.12 E-value=0.32 Score=43.15 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=18.7
Q ss_pred ccEEEEcCCCchhhHHHHHHhc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..|.++|+||+|||+|+.....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999876653
No 325
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.02 E-value=0.34 Score=44.82 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=25.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc--EEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~--~v~~~G~ 380 (420)
.+.|+|..|.|||+||+.++.+.+. .|+..|.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~ 81 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGK 81 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCE
Confidence 4889999999999999999998752 2445554
No 326
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=86.93 E-value=0.28 Score=48.78 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.++.|+|.+|+|||+||+.+..+.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 369999999999999999998773
No 327
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.91 E-value=0.34 Score=45.35 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=27.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
+|++ +.|+|..|.|||+|||.++.+.+. .|+..|+.
T Consensus 46 ~Ge~-~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~ 84 (279)
T 2ihy_A 46 KGDK-WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKM 84 (279)
T ss_dssp TTCE-EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBC
T ss_pred CCCE-EEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 3443 789999999999999999998753 35556643
No 328
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=86.89 E-value=0.34 Score=47.71 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.5
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
+++....+.|||.||+|||+|++.....
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3555678999999999999999998765
No 329
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.87 E-value=0.3 Score=42.96 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=23.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC-cEEEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN-RSVIT 377 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p-~~v~~ 377 (420)
.+.|+|.+|+|||+|++..+.+.+ +..|+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 488999999999999999999754 33344
No 330
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.86 E-value=0.33 Score=43.20 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=24.6
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
..|+|+|-||+|||++.+..++-....++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4799999999999999999887555444443
No 331
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.86 E-value=0.42 Score=41.72 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.1
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
..|.|+|-||+|||++.+..++-..-.++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 3699999999999999998876655444433
No 332
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.82 E-value=0.5 Score=40.39 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.|.|+|-||+|||++++..++..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999998864
No 333
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.82 E-value=0.33 Score=41.85 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.6
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
..|.|+|.||+|||++++..++..+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999877653
No 334
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.81 E-value=0.21 Score=45.27 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=24.5
Q ss_pred ccCcccEEEEcCCCchhhHH-HHHHhccCCc
Q 014661 344 VRGESHLLLVGDPGTGKSQF-LKFAAKLSNR 373 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSql-L~~~~~~~p~ 373 (420)
.||.++|++.|.||+|||.+ +..+..++-+
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 48889999999999999998 6666665543
No 335
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.81 E-value=0.4 Score=45.38 Aligned_cols=53 Identities=15% Similarity=0.037 Sum_probs=37.2
Q ss_pred CCcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhcc-CCcEEEEeccc
Q 014661 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL-SNRSVITTGLG 381 (420)
Q Consensus 313 aP~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~-~p~~v~~~G~~ 381 (420)
.+.++|.+.....+.= +.. -++++.|.+|+|||.|++.+.+- ..+.+|+++..
T Consensus 12 ~~~~~gR~~el~~L~~--l~~--------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG--LRA--------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp GGGSCCCHHHHHHHHH--TCS--------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred HHHhcChHHHHHHHHH--hcC--------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 3457888766554433 321 17999999999999999987654 34578887664
No 336
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=86.79 E-value=0.33 Score=48.37 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 318 GLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 318 G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
|.+.+...++-.+-......... ....+.+.+.|+|+||+|||+|++......
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~-~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESK-PEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSC-CCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CHHHHHHHHHHhcccccccchhc-cccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 55666666655553211000000 012345899999999999999999987653
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.79 E-value=0.34 Score=42.48 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred cEEEEcCCCchhhHHHHHHhcc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.|.|+|.||+|||++.+..+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5889999999999999999984
No 338
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.73 E-value=0.35 Score=44.91 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=26.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
.+.|+|..|.|||+|||.++.+.+. .|+..|+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 74 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQN 74 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 3778999999999999999998854 35566653
No 339
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.73 E-value=0.23 Score=44.29 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 014661 350 LLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~ 370 (420)
+.|+|..|+|||+||+.++.+
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 778999999999999999988
No 340
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.71 E-value=0.36 Score=43.01 Aligned_cols=31 Identities=39% Similarity=0.485 Sum_probs=23.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEec
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G 379 (420)
.|+|+|.||.||++..+..++-..-....+|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 5899999999999999988876654333333
No 341
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.60 E-value=0.35 Score=44.44 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=25.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~ 380 (420)
.|.|+|.||+|||++++..++.....++-++.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~ 81 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDCDT 81 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeCcH
Confidence 69999999999999999999866555554443
No 342
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.58 E-value=0.69 Score=43.92 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.7
Q ss_pred EEEEcCCCchhhHHHHHHhccC
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~ 371 (420)
+.|+|-.|.|||+||+......
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 6789999999999999998764
No 343
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.55 E-value=0.53 Score=45.52 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=26.9
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh-ccC---CcEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA-KLS---NRSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~-~~~---p~~v~~~G~~s 382 (420)
+|.+ +++.|+||+|||+|+..++ .+. -+.+|+++..+
T Consensus 60 ~G~i-v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 60 RGRV-IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp TTSE-EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCeE-EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 4554 8888999999999965544 443 36788887764
No 344
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.50 E-value=0.25 Score=44.43 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=15.0
Q ss_pred cEEEEcCCCchhhHHHHHHh-ccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAA-KLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~-~~~p~ 373 (420)
-+.|+|.+|+|||+|++..+ .+.|.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 37889999999999999999 88764
No 345
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.47 E-value=0.38 Score=46.12 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=26.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~ 380 (420)
.++++|.+|+|||+||+....+.|. .+...|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 6999999999999999999999863 4555554
No 346
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.41 E-value=0.36 Score=43.90 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=25.3
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEEec
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G 379 (420)
..|+|.|.||+|||++.+..++-.+.-++.+|
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 47999999999999999998765555455444
No 347
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=86.36 E-value=0.33 Score=46.44 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+..+.|+++|+||+|||.|++....
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred cCcceEEEECCCCccHHHHHHHHhC
Confidence 4567999999999999999987643
No 348
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=86.25 E-value=0.43 Score=44.23 Aligned_cols=32 Identities=25% Similarity=0.569 Sum_probs=25.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcE--EEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRS--VITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~--v~~~G~ 380 (420)
.+.|+|..|+|||+|||.++.+.|.+ |+..|.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~ 65 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGM 65 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCE
Confidence 47899999999999999999887532 444443
No 349
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.14 E-value=0.48 Score=44.91 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=27.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc---cC-----------------CcEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK---LS-----------------NRSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~---~~-----------------p~~v~~~G~~s 382 (420)
+|. -+++.|+||+|||+|+...+. +. -+.+|++...+
T Consensus 97 ~g~-i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 97 SQS-VTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp TTE-EEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 444 489999999999999876553 11 36688888775
No 350
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.14 E-value=0.37 Score=42.10 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.|+|.|-||+|||++.+..++-.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988743
No 351
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.13 E-value=0.2 Score=60.54 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=40.6
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEEeccccccCCceeeEEeeCCceeeccceeeecCCceEeeecccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDR 420 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~~ss~~gLt~~~~r~~g~~~leaGalvlad~Gv~ciDe~dK 420 (420)
..+++.|+||||||.+.++.++...+-+++-- ++ -+++.+.. |.. + .| ....|..+|+||||.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~n--c~-e~ld~~~l---g~~-~-~g--~~~~Gaw~~~DE~nr 708 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFN--CD-DSFDYQVL---SRL-L-VG--ITQIGAWGCFDEFNR 708 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEE--TT-SSCCHHHH---HHH-H-HH--HHHHTCEEEEETTTS
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEE--CC-CCCChhHh---hHH-H-HH--HHhcCCEeeehhhhh
Confidence 35789999999999999999999988766521 11 12222110 111 1 11 224578999999984
No 352
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=86.12 E-value=0.36 Score=47.01 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=20.7
Q ss_pred cccCccc-EEEEcCCCchhhHHHHHHhccC
Q 014661 343 KVRGESH-LLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 343 ~~Rg~ih-iLlvGdpg~gKSqlL~~~~~~~ 371 (420)
+.|..+. |.|+|.||+|||+|++......
T Consensus 174 r~~~~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 174 NKRNNIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -----CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred hhhcCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 3444566 9999999999999999887654
No 353
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=86.08 E-value=0.13 Score=44.74 Aligned_cols=23 Identities=48% Similarity=0.505 Sum_probs=19.8
Q ss_pred CcccEEEEcCCCchhhHHHHHHh
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
..++|+++|+||+|||.|++...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSB
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 35899999999999999998654
No 354
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.07 E-value=0.39 Score=43.68 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=26.7
Q ss_pred cccEEEEcCCCchhhHHHHHHhccCCcEEEEecc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~ 380 (420)
.+.|.|.|.||+|||++.+.+++...-.++-+|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGA 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCc
Confidence 4689999999999999999998765544444443
No 355
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.97 E-value=0.4 Score=46.90 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=22.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEE
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v 375 (420)
.++|+|.||+|||+|++.++....-.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 689999999999999999987654333
No 356
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=85.93 E-value=0.36 Score=45.58 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.0
Q ss_pred cEEEEcCCCchhhHHHHHHhc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~ 369 (420)
.|.|+|+||+|||+|++....
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 699999999999999998754
No 357
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.92 E-value=0.37 Score=45.03 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=26.1
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC-Cc----EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS-NR----SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~-p~----~v~~~G~~ 381 (420)
+|++ ++|+|.||+|||+|++.++... |. ..|.++..
T Consensus 34 ~G~~-~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 34 GGEV-IMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TTCE-EEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CCeE-EEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 4554 7889999999999999876654 22 34666654
No 358
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.88 E-value=0.32 Score=47.24 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.6
Q ss_pred cccEEEEcCCCchhhHHHHHHh
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
+++|+++|++|+|||+|++...
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHh
Confidence 4689999999999999999853
No 359
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.83 E-value=0.49 Score=42.44 Aligned_cols=37 Identities=35% Similarity=0.463 Sum_probs=24.8
Q ss_pred cCcccEEEEcCCCchhhHHHH-HHhcc----CCcEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLK-FAAKL----SNRSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~-~~~~~----~p~~v~~~G~~s 382 (420)
+|+ -+++.|+||+|||+|+- ++.+. -.+..|.|...+
T Consensus 29 ~G~-l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 29 EGT-TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTC-EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCe-EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 444 48899999999999864 34332 245677776543
No 360
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=85.82 E-value=0.4 Score=44.10 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++|+++|++|+|||.|+.....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999998764
No 361
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.82 E-value=0.36 Score=42.72 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=25.2
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC-----cEEEEec
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTG 379 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p-----~~v~~~G 379 (420)
.|+|+|-||+|||++.+..++..+ ..+++.|
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 589999999999999999987765 2566655
No 362
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=85.62 E-value=0.41 Score=45.08 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
+..++|+++|+||+|||.|+....
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~ 176 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYT 176 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHH
T ss_pred cceeEEEEECCCCCChHHHHHHHH
Confidence 345789999999999999997664
No 363
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.56 E-value=0.4 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.++|+|.||+|||+|.+..++-.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 378999999999999998876544
No 364
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.50 E-value=0.43 Score=40.84 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.2
Q ss_pred EEEEcCCCchhhHHHHHHhccCC
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.+|+|+.|+|||.||+++.-+..
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 57999999999999999987654
No 365
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=85.46 E-value=0.41 Score=45.15 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred cEEEEcCCCchhhHHHHHHhcc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.|.|+|.||+|||+|++.....
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999998754
No 366
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.35 E-value=0.56 Score=43.72 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=23.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
.|+|+|-||+|||++.+..++-.+...+++
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 589999999999999999987444444553
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.33 E-value=0.42 Score=42.49 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=22.3
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
..|+|+|-||+|||++.+..++-...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999998776554
No 368
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.18 E-value=0.45 Score=44.75 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
.+.|+|..|.|||+||+.++.+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4788999999999999999999864
No 369
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.11 E-value=0.44 Score=46.19 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
.+.|+|.+|+|||+|++..+.+.+.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999988764
No 370
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.02 E-value=0.46 Score=40.83 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.|.|.|-||+|||++.+..++-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999987743
No 371
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=84.97 E-value=0.44 Score=46.35 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.5
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
+.|.|||.||+|||+|++....-
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999998763
No 372
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=84.94 E-value=2.2 Score=35.43 Aligned_cols=54 Identities=19% Similarity=0.489 Sum_probs=31.7
Q ss_pred eEEEEEEEEEecCCCceeeecc---cccc----cccee-----cCCCCCCCCCCCCCCCceEEecceeeEe
Q 014661 141 KMYEGERTYMCRKCKHMFPVYP---ELET----RNSIV-----LPSHCPSQRSKPCEGTNFQFVENSIICH 199 (420)
Q Consensus 141 k~~~~~~~f~C~~C~~~~~~~~---~~~~----~~~~~-----~P~~C~~~~~~~C~~~~f~~~~~~s~~~ 199 (420)
......+.+.|..||+.+.... .+.. ...+. .+..||. |++..+.+..+.-.++
T Consensus 63 ~i~~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~-----Cgs~~~~i~~G~el~I 128 (139)
T 3a43_A 63 EFVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPK-----CGSHDFEVVKGRGVYV 128 (139)
T ss_dssp EEEEECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSS-----SSCCCEEEEESSCEEE
T ss_pred EEEecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCcc-----ccCCccEEecCCeEEE
Confidence 3444556799999999976422 0000 00011 1678984 9998777776654443
No 373
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=84.87 E-value=0.44 Score=45.54 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 014661 350 LLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~ 370 (420)
+||.|+||+|||++.+..++-
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHHH
Confidence 999999999999999988764
No 374
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.85 E-value=0.48 Score=43.41 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=26.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhcc--C-Cc--EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKL--S-NR--SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~--~-p~--~v~~~G~~ 381 (420)
+|.+ +.|+|..|.|||+||+.++.+ . |. .|+..|..
T Consensus 28 ~Ge~-~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~ 68 (250)
T 2d2e_A 28 KGEV-HALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGEN 68 (250)
T ss_dssp TTCE-EEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE
T ss_pred CCCE-EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEE
Confidence 3443 789999999999999999997 3 32 35566643
No 375
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.61 E-value=0.53 Score=45.65 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=27.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
+|.+ +.|+|..|+|||+|||.++.+.+. .|+..|+.
T Consensus 40 ~Ge~-~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~ 78 (355)
T 1z47_A 40 EGEM-VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKR 78 (355)
T ss_dssp TTCE-EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred CCCE-EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEE
Confidence 3444 778899999999999999999863 25555543
No 376
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=84.60 E-value=0.64 Score=42.50 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.1
Q ss_pred cCcccEEEEcCC---------CchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDP---------GTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdp---------g~gKSqlL~~~~~ 369 (420)
...+.|+++|+| |+|||.|++....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 445899999999 9999999998876
No 377
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.54 E-value=0.51 Score=45.79 Aligned_cols=31 Identities=19% Similarity=0.405 Sum_probs=25.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC---cEEEEec
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN---RSVITTG 379 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p---~~v~~~G 379 (420)
.++++|..|+|||+||+....+.| +.+.+.|
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~ 210 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQRLITIED 210 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence 699999999999999999999876 3455554
No 378
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=84.53 E-value=1.3 Score=35.60 Aligned_cols=48 Identities=19% Similarity=0.493 Sum_probs=30.3
Q ss_pred EEEecceeEEEEEEEEEecCCCceeeeccccccccceecCC-CCCCCCCCCCCCCceEEecce
Q 014661 134 VIRSGATKMYEGERTYMCRKCKHMFPVYPELETRNSIVLPS-HCPSQRSKPCEGTNFQFVENS 195 (420)
Q Consensus 134 V~r~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~P~-~C~~~~~~~C~~~~f~~~~~~ 195 (420)
+..-...........|.|..||+.+... ..+. .||. |++....+..+.
T Consensus 59 ~~e~a~L~i~~~p~~~~C~~CG~~~e~~---------~~~~~~CP~-----Cgs~~~~i~~G~ 107 (119)
T 2kdx_A 59 VCKDAILDIVDEKVELECKDCSHVFKPN---------ALDYGVCEK-----CHSKNVIITQGN 107 (119)
T ss_dssp TTSSCCEEEEEECCEEECSSSSCEECSC---------CSTTCCCSS-----SSSCCCEEEESS
T ss_pred hhcCcEEEEEeccceEEcCCCCCEEeCC---------CCCCCcCcc-----ccCCCcEEecCC
Confidence 3333344444555689999999987531 2356 7984 988766655554
No 379
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.52 E-value=0.54 Score=45.69 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=27.5
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
+|.+ +.|+|..|+|||+|||.++.+.+. .|+..|+.
T Consensus 28 ~Ge~-~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~ 66 (359)
T 2yyz_A 28 DGEF-VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVL 66 (359)
T ss_dssp TTCE-EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred CCCE-EEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEE
Confidence 3444 678899999999999999999753 25555543
No 380
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.51 E-value=0.53 Score=45.99 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.5
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
+.+-|++++|.+|.|||.+++.....
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHH
Confidence 46779999999999999999987643
No 381
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.45 E-value=0.48 Score=43.90 Aligned_cols=24 Identities=33% Similarity=0.278 Sum_probs=19.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+|.+ ++|+|.||+|||+|++..+.
T Consensus 29 ~G~i-~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTV-GALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSE-EEEEESTTSSHHHHHHHHHH
T ss_pred CCCE-EEEEcCCCCCHHHHHHHHHH
Confidence 5555 88899999999999887764
No 382
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=84.43 E-value=0.36 Score=48.64 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.3
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHhc
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..|..++|.++|+||+|||.|++....
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~ 246 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQ 246 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHH
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 456778999999999999999998654
No 383
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.43 E-value=0.47 Score=43.85 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=25.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC----cEEEEecc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGL 380 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p----~~v~~~G~ 380 (420)
.++++|.+|.|||+||+.+..+.+ ..+++.|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 599999999999999999988763 24666664
No 384
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=84.40 E-value=0.51 Score=43.74 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=26.9
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC---C--cEEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS---N--RSVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~---p--~~v~~~G~~ 381 (420)
+|++ +.|+|..|.|||+|||.++.+. | -.|+..|..
T Consensus 45 ~Ge~-~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~ 85 (267)
T 2zu0_C 45 PGEV-HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKD 85 (267)
T ss_dssp TTCE-EEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEE
T ss_pred CCCE-EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEE
Confidence 4444 7899999999999999999983 2 135555543
No 385
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.39 E-value=0.55 Score=47.88 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=23.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
+++++|.+|+|||++|+....+.|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 5999999999999999999998864
No 386
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=84.36 E-value=0.97 Score=44.90 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.1
Q ss_pred CcccEEEEcCCCchhhHHHHHHhc
Q 014661 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 346 g~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+.++|.++|+||+|||.|+.....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~ 197 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG 197 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC
Confidence 357999999999999999998764
No 387
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.26 E-value=0.46 Score=42.69 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
-|+|+|.||.||++..+..++-..-
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3788999999999999888776544
No 388
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.22 E-value=0.51 Score=45.63 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=26.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
-+.|+|..|+|||+|||.++.+.+. .|+..|+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~ 63 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKD 63 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 3778899999999999999999753 25555543
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=84.22 E-value=0.51 Score=41.35 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.4
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..|.|.|-||+|||++.+..++-
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999998864
No 390
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=84.21 E-value=0.49 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.0
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
+.+.|||.||+|||+|++.....
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999987654
No 391
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=84.19 E-value=0.5 Score=43.39 Aligned_cols=22 Identities=50% Similarity=0.738 Sum_probs=20.1
Q ss_pred cEEEEcCCCchhhHHHHHHhcc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.|+|+|-||+|||++.+..++-
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5999999999999999998874
No 392
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=84.16 E-value=0.5 Score=41.69 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=18.9
Q ss_pred ccEEEEcCCCchhhHHHHHHhc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..++++|.||+|||+|+.....
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999977654
No 393
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.16 E-value=0.56 Score=45.59 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=27.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
+|.+ +.|+|..|+|||+|||.++.+.+. .|+..|+.
T Consensus 28 ~Ge~-~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~ 66 (362)
T 2it1_A 28 DGEF-MALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKD 66 (362)
T ss_dssp TTCE-EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred CCCE-EEEECCCCchHHHHHHHHhcCCCCCceEEEECCEE
Confidence 3444 678899999999999999999763 25555543
No 394
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.15 E-value=0.64 Score=40.69 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.1
Q ss_pred EEEEcCCCchhhHHHHHHhccCCcEE
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLSNRSV 375 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~p~~v 375 (420)
|.|+|++|+||++|++...+-.|..+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 78999999999999999877666543
No 395
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=84.12 E-value=0.49 Score=48.43 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.3
Q ss_pred ccCcccEEEEcCCCchhhHHHHHHhc
Q 014661 344 VRGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
....+.|+|||+||+|||+|++....
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~ 63 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIG 63 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhc
Confidence 34568999999999999999998764
No 396
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=84.09 E-value=1.1 Score=41.47 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.8
Q ss_pred ccEEEEcCCCchhhHHHHHHhc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+.++++|.||+|||.|++....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 6899999999999999998764
No 397
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.94 E-value=0.66 Score=39.99 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEcCCCchhhHHHHHHhccC
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~ 371 (420)
|.|.|-||+|||++.+..++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999988764
No 398
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=83.84 E-value=0.59 Score=45.60 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=26.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEecc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGL 380 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~ 380 (420)
+|.+ +.|+|..|+|||+|||.++.+.+. .|+..|+
T Consensus 28 ~Ge~-~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 65 (372)
T 1g29_1 28 DGEF-MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDK 65 (372)
T ss_dssp TTCE-EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred CCCE-EEEECCCCcHHHHHHHHHHcCCCCCccEEEECCE
Confidence 4444 778899999999999999999863 2555554
No 399
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=83.83 E-value=0.55 Score=40.81 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=21.7
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
..|.|+|-||+|||++.+..++-.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 369999999999999999998875
No 400
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=83.79 E-value=0.76 Score=43.39 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.9
Q ss_pred cEEEEcCCCchhhHHHHHHhc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~ 369 (420)
.|.++|+||+|||+|++....
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 699999999999999998754
No 401
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.78 E-value=0.55 Score=44.27 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-+.|+|.+|+|||+||+.+..+.+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 368999999999999999988764
No 402
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=83.78 E-value=0.52 Score=45.51 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccC
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.+...++++|+||+|||+|++....-.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355789999999999999999876654
No 403
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=83.78 E-value=0.6 Score=45.59 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=26.3
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
-+.|+|..|+|||+|||.++.+.+. .|+..|+.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~ 74 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD 74 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEE
Confidence 3678899999999999999999863 25556644
No 404
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.68 E-value=0.59 Score=42.11 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=25.7
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEEecc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~ 380 (420)
..|.|+|.||+|||++.+..++.....++-+|.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~ 49 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA 49 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecCCC
Confidence 359999999999999999998854444555543
No 405
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=83.66 E-value=0.61 Score=45.67 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=27.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEecc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGL 380 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~ 380 (420)
+|.+ +.|+|..|+|||+|||.++.+.+. .|+..|+
T Consensus 28 ~Ge~-~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~ 65 (381)
T 3rlf_A 28 EGEF-VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 65 (381)
T ss_dssp TTCE-EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred CCCE-EEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCE
Confidence 4444 678899999999999999999864 2455554
No 406
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=83.66 E-value=0.6 Score=45.34 Aligned_cols=35 Identities=29% Similarity=0.569 Sum_probs=27.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEecc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGL 380 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~ 380 (420)
+|.+ +.|+|..|+|||+|||.++.+.+. .|+..|+
T Consensus 29 ~Ge~-~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~ 66 (359)
T 3fvq_A 29 PGEI-LFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK 66 (359)
T ss_dssp TTCE-EEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred CCCE-EEEECCCCchHHHHHHHHhcCCCCCCcEEEECCE
Confidence 3444 678999999999999999998754 3555554
No 407
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=83.44 E-value=0.61 Score=40.43 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.3
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..|.|+|.||+|||++.+..++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46999999999999999999987
No 408
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.43 E-value=0.55 Score=40.92 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=25.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEec
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G 379 (420)
.|.|.|.||+|||++.+..++.....++-++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5899999999999999999886555455444
No 409
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=83.29 E-value=0.56 Score=44.02 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=21.8
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc--CCcE
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL--SNRS 374 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~--~p~~ 374 (420)
..|.++|+||+|||+|+.+...- .|++
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~lp~~ 53 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDFLPRG 53 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCCC-
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCcCCCC
Confidence 57999999999999999998543 4553
No 410
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=83.26 E-value=0.59 Score=45.98 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.0
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHhc
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+.+....+.|||.||.|||+|++....
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 345556899999999999999999876
No 411
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=83.25 E-value=0.58 Score=40.97 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.4
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..|.|+|-||+|||++.+..++-
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
No 412
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=83.23 E-value=0.41 Score=48.37 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.1
Q ss_pred CcccCcccEEEEcCCCchhhHHHHHHhc
Q 014661 342 TKVRGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 342 ~~~Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...|..++|.++|+||+|||.|++....
T Consensus 228 ~~~r~~~kV~ivG~~nvGKSSLln~L~~ 255 (476)
T 3gee_A 228 RIVSEGVSTVIAGKPNAGKSTLLNTLLG 255 (476)
T ss_dssp HHHHHCEEEEEECCTTSSHHHHHHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3467778999999999999999997643
No 413
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=82.92 E-value=0.6 Score=45.25 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=21.5
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.+|+|+|.||+|||++.+..++...
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3799999999999999998877553
No 414
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=82.77 E-value=0.63 Score=46.60 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.2
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
++|+.|.||||||.+++...+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999998876544
No 415
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=82.76 E-value=0.74 Score=44.45 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=22.1
Q ss_pred EEEEcCCCchhhHHHHHHhccCCc
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
+.|+|++|+|||+||+.++.+...
T Consensus 74 ~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 74 IGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 889999999999999999998754
No 416
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=82.76 E-value=0.61 Score=47.09 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
+..++|+|+|+||+|||.|+.....
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~ 344 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKL 344 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhc
Confidence 3458999999999999999998754
No 417
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.58 E-value=0.52 Score=45.65 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=26.7
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEecc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGL 380 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~ 380 (420)
+|.+ +.|+|..|+|||+|||.++.+.+. .|+..|+
T Consensus 30 ~Ge~-~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~ 67 (353)
T 1oxx_K 30 NGER-FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR 67 (353)
T ss_dssp TTCE-EEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred CCCE-EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCE
Confidence 3444 678899999999999999998753 2555554
No 418
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=82.54 E-value=0.51 Score=46.81 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.4
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-.+.|||.||.|||+||+.+....|
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc
Confidence 3689999999999999999988866
No 419
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=82.43 E-value=0.63 Score=45.84 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=19.4
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
++|.+||.||+|||+|+++...-
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999987643
No 420
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=82.33 E-value=0.44 Score=46.23 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.++++|.+|+|||++|+.+..+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 699999999999999999877764
No 421
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=82.10 E-value=0.64 Score=44.17 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.9
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.-+.|+|.+|+|||+|++.++.+.+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3588999999999999999988764
No 422
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.01 E-value=0.73 Score=45.64 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=22.5
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
..+.|+|.+|.|||+||+.+..+.+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3789999999999999999998764
No 423
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=81.92 E-value=0.67 Score=40.60 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.0
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.-+.|+|.+|+|||++++..+...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999988764
No 424
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=81.91 E-value=0.77 Score=44.55 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.3
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-+.|+|.||+|||+|++......+
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 378999999999999999988765
No 425
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=81.91 E-value=0.94 Score=39.92 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=26.8
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCcEEEEecc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~ 380 (420)
..|.|+|.||+|||++.+..++...-.++-++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~ 36 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTGA 36 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCCh
Confidence 468999999999999999998876666665543
No 426
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=81.88 E-value=0.69 Score=43.85 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=27.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc---EEEEecccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGS 382 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~s 382 (420)
.+.|||..|.|||+||+.++.+.+. .|+..|...
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i 118 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDI 118 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 5889999999999999999998754 366666543
No 427
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=81.84 E-value=0.7 Score=46.43 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.8
Q ss_pred cccEEEEcCCCchhhHHHHHHhcc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
...|+|+|.||+|||++.+..++-
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999987653
No 428
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=81.69 E-value=0.83 Score=45.59 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
-+.|+|++|+|||+||+.++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 3889999999999999999998853
No 429
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=81.54 E-value=0.75 Score=38.46 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.8
Q ss_pred EEEEcCCCchhhHHHHHHhc
Q 014661 350 LLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~ 369 (420)
.+++|+.|.|||.||.++.-
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999864
No 430
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=81.54 E-value=0.68 Score=45.50 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=25.6
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc--EEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~--~v~~~G~~ 381 (420)
-+.|+|..|+|||+|||.++.+.+. .|+..|+.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~ 83 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVS 83 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCB
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEE
Confidence 4889999999999999999998762 14444543
No 431
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.40 E-value=0.84 Score=43.03 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEcCCCchhhHHHHHHhccCC
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~p 372 (420)
+.|+|.+|.|||+|++.+. +.+
T Consensus 168 ~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEECCCCCCHHHHHHHHH-Hhh
Confidence 6789999999999999999 654
No 432
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=81.30 E-value=0.5 Score=46.09 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.++++|.+|+|||++|+....+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 599999999999999999988764
No 433
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=81.25 E-value=0.81 Score=43.93 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.0
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
..+.|+|.||.|||+||+.+..+.
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998654
No 434
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=81.17 E-value=0.86 Score=44.32 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=27.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
+|.+ +.|+|..|.|||+|||.++.+.+. .|+..|+.
T Consensus 53 ~Gei-~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~ 91 (366)
T 3tui_C 53 AGQI-YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 91 (366)
T ss_dssp TTCE-EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred CCCE-EEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEE
Confidence 4444 678999999999999999999754 25555553
No 435
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=81.10 E-value=1.2 Score=42.15 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=20.0
Q ss_pred ccEEEEcCCCchhhHHHHHHhc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.|.||.|+||+||+++.+..++
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998876
No 436
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=81.02 E-value=1.1 Score=39.43 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.0
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..|.|.|.||+|||++++..+++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHc
Confidence 46999999999999999999984
No 437
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=80.82 E-value=0.79 Score=41.53 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.8
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
-|-|+|.+|+|||+|++..+.+.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998864
No 438
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=80.53 E-value=0.63 Score=44.86 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.1
Q ss_pred ccEEEEcCCCchhhHHHHHHhc--cCCcE
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAK--LSNRS 374 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~--~~p~~ 374 (420)
..|.+||+||+|||.|+.+... ++|++
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~ 60 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDFLPRG 60 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCCSCCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 5799999999999999998754 44553
No 439
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.47 E-value=1.2 Score=39.61 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.2
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.-|+|+|++|+|||.|....++-.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3599999999999999888777655
No 440
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=80.45 E-value=0.89 Score=43.84 Aligned_cols=24 Identities=38% Similarity=0.711 Sum_probs=21.0
Q ss_pred cccEEEEcCCCchhhHHHHHHhcc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
-..|.|+|.||.|||+|++.....
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998753
No 441
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=80.35 E-value=0.7 Score=43.65 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-+.|+|.+|+|||+|++.++.+.+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999998754
No 442
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=80.22 E-value=0.66 Score=46.64 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=26.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCc----E-EEEec
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNR----S-VITTG 379 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~----~-v~~~G 379 (420)
-++|+|..|+|||+|||.++.+.++ . +++.|
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 4899999999999999999999853 3 77766
No 443
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=80.07 E-value=0.62 Score=40.12 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.3
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.+.++|.+|+|||+|++.+..+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999988864
No 444
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=80.03 E-value=0.76 Score=45.58 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=26.1
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC---cEEEEeccc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLG 381 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p---~~v~~~G~~ 381 (420)
.++++|.+|.|||++|+.+..+.+ ..|++.|..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 489999999999999999877654 246666643
No 445
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=79.92 E-value=1.8 Score=43.15 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.6
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|.++|+||+|||.|+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~ 217 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLG 217 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cccceeEEecCCCCCHHHHHHHHhC
Confidence 4468999999999999999998763
No 446
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=79.66 E-value=0.8 Score=45.51 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.4
Q ss_pred ccEEEEcCCCchhhHHHHHHhc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..|.|||+||+|||.|++....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEE
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999998754
No 447
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=79.33 E-value=0.93 Score=45.06 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=18.5
Q ss_pred cEEEEcCCCchhhHHHHHHhc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~ 369 (420)
.|.|||+|++|||+|+.....
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~ 23 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVK 23 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999987653
No 448
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=79.23 E-value=0.9 Score=43.54 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=18.9
Q ss_pred cEEEEcCCCchhhHHHHHHh-ccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAA-KLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~-~~~p 372 (420)
.|+|+||.|+|||.|+++.. +..|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~ 25 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP 25 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC
Confidence 37999999999999997653 4444
No 449
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=79.23 E-value=1.1 Score=40.21 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=26.8
Q ss_pred ccCcccEEEEcCCCchhhHHHHHHhccCCcEEEEecc
Q 014661 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G~ 380 (420)
.+|. -|.|+|..|.|||++++.++.. ...+..+|.
T Consensus 18 ~~g~-~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~~~ 52 (230)
T 2vp4_A 18 TQPF-TVLIEGNIGSGKTTYLNHFEKY-KNDICLLTE 52 (230)
T ss_dssp CCCE-EEEEECSTTSCHHHHHHTTGGG-TTTEEEECC
T ss_pred CCce-EEEEECCCCCCHHHHHHHHHhc-cCCeEEEec
Confidence 3454 4889999999999999999998 333555554
No 450
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=78.99 E-value=0.94 Score=45.28 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.0
Q ss_pred cccEEEEcCCCchhhHHHHHHhc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...|+|||+||+|||.|++....
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35799999999999999998754
No 451
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=78.91 E-value=0.58 Score=41.04 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.4
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-|.++|-||+|||++++..++..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999876653
No 452
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=78.78 E-value=0.39 Score=48.62 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=22.9
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHhc
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..|..+.|.|+|+||+|||.||+....
T Consensus 239 ~~r~~~kV~ivG~pnvGKSSLln~L~~ 265 (482)
T 1xzp_A 239 LLNRGLRMVIVGKPNVGKSTLLNRLLN 265 (482)
T ss_dssp HHHHCEEEEEECCHHHHTCHHHHHHHH
T ss_pred hccCCCEEEEECcCCCcHHHHHHHHHC
Confidence 455568999999999999999987754
No 453
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=78.73 E-value=0.52 Score=44.73 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.3
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
-+.|+|.||+|||+|++......
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 58899999999999999987655
No 454
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=78.60 E-value=1 Score=43.96 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=24.5
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
...|+..|-|||-|++|||+|++....-
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999999998764
No 455
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=78.59 E-value=0.87 Score=43.84 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.5
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.|.|+|+|++|||+|++....--|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~ 183 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP 183 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC
Confidence 688999999999999998765443
No 456
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=78.10 E-value=1.1 Score=42.47 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=27.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCC---cEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p---~~v~~~G~~s 382 (420)
+|. .+.|+|.+|+|||++++..+.+.+ ..|...|.-.
T Consensus 101 ~g~-vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGR-VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSS-EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCe-EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 344 488899999999999999987653 3466655544
No 457
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=78.08 E-value=1.5 Score=42.32 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=26.5
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc-c---CCcEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK-L---SNRSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~-~---~p~~v~~~G~~s 382 (420)
+|.+ +++.|.||+|||+|...++. + -.+.+|+++..+
T Consensus 62 ~G~i-i~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 62 MGRI-VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp TTSE-EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCeE-EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4444 78889999999998755442 2 246788888654
No 458
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.07 E-value=1.6 Score=41.58 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=24.9
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEec
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~G 379 (420)
.|+|+|.||+|||+|.+..++-.+ ..++++
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~-~~iis~ 36 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP-CELISV 36 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC-EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CcEEec
Confidence 589999999999999999988776 455554
No 459
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=77.70 E-value=1.1 Score=47.51 Aligned_cols=24 Identities=42% Similarity=0.593 Sum_probs=21.4
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
+..++|.++|+||.|||+|+.+..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLl 90 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALI 90 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 455789999999999999999876
No 460
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=77.60 E-value=1.6 Score=41.54 Aligned_cols=84 Identities=8% Similarity=0.005 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHHhhcC-CCccchhhhhhccCCcccCCHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCc
Q 014661 280 IDIPDDIIMQFKQFWSEFKD-TPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGT 358 (420)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~siaP~i~G~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~ 358 (420)
..+|+++++.++.+-+.+.- +-..+|-=|++.+ --.||....-.++.+.+.++.. .+...-+.|+|.+|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll-~~~~~~~~~l~~~~~~~l~~~~--------~~~p~iigI~GpsGS 103 (321)
T 3tqc_A 33 LTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLL-SFYVTARQTLQQATYQFLGKPE--------PKVPYIIGIAGSVAV 103 (321)
T ss_dssp CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCC--------CCCCEEEEEECCTTS
T ss_pred CCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHhccCC--------CCCCEEEEEECCCCC
Confidence 55788877666533222110 0001121222222 1123444444556666665421 123356999999999
Q ss_pred hhhHHHHHHhccCC
Q 014661 359 GKSQFLKFAAKLSN 372 (420)
Q Consensus 359 gKSqlL~~~~~~~p 372 (420)
|||++++....+..
T Consensus 104 GKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 104 GKSTTSRVLKALLS 117 (321)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999988864
No 461
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.59 E-value=1.1 Score=42.87 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=26.4
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc---EEEEeccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG 381 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~~ 381 (420)
+|. -+.|+|.+|+|||++++..+.+.+. .|+..|.-
T Consensus 128 ~g~-vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 128 KPY-VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp SSE-EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 444 4789999999999999998876532 45555544
No 462
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=77.54 E-value=1.1 Score=42.28 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=27.6
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCC---cEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p---~~v~~~G~~s 382 (420)
+|. -++|+|.+|+|||++++..+.+.+ ..|+..|.-.
T Consensus 99 ~g~-vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 99 KPA-VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp SCE-EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCc-EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 344 488999999999999999988753 3466666543
No 463
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=77.29 E-value=1.1 Score=46.44 Aligned_cols=22 Identities=50% Similarity=0.690 Sum_probs=19.4
Q ss_pred cEEEEcCCCchhhHHHHHHhcc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~ 370 (420)
++++.|.||||||.+++.+...
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999998887664
No 464
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=77.23 E-value=1.3 Score=38.83 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.1
Q ss_pred cccEEEEcCCCchhhHHHHHHhccCC
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
...|.|.|-||+|||++.+..++...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45688999999999999999988743
No 465
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=77.21 E-value=1.2 Score=40.01 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.9
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.-|.+.|.||+|||++++..++..+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3589999999999999999988765
No 466
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=77.12 E-value=1.3 Score=43.45 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.4
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
...++|.++|++|.|||.|+++...
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999999875
No 467
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=77.01 E-value=0.92 Score=47.26 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEcCCCchhhHHHHHHhccC-Cc
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLS-NR 373 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~-p~ 373 (420)
+.+||++|.|||+||+.+..+. |+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~ 72 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPR 72 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC
Confidence 8999999999999999999986 53
No 468
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=77.00 E-value=1.3 Score=45.35 Aligned_cols=28 Identities=36% Similarity=0.360 Sum_probs=23.4
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCCc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
+|++ +.|+|..|.|||+|||.++.+.+.
T Consensus 46 ~Ge~-~~LvG~NGaGKSTLlk~l~Gl~~p 73 (538)
T 1yqt_A 46 EGMV-VGIVGPNGTGKSTAVKILAGQLIP 73 (538)
T ss_dssp TTSE-EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCE-EEEECCCCCCHHHHHHHHhCCCCC
Confidence 4444 688999999999999999998753
No 469
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=76.92 E-value=2.5 Score=43.92 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHhcCceeeCCCCCcccCcccEEEEcCCCchhhHHHHHHh
Q 014661 319 LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 319 ~~~~K~ailL~L~gg~~~~~~~g~~~Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
.+.=|.|+...+-++ .+++.|.||||||.++.++.
T Consensus 151 ~~~Q~~Ai~~~l~~~---------------~~vi~G~pGTGKTt~l~~ll 185 (608)
T 1w36_D 151 INWQKVAAAVALTRR---------------ISVISGGPGTGKTTTVAKLL 185 (608)
T ss_dssp CCHHHHHHHHHHTBS---------------EEEEECCTTSTHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC---------------CEEEEeCCCCCHHHHHHHHH
Confidence 445666776666321 68999999999999887664
No 470
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=76.64 E-value=1.8 Score=43.78 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=27.6
Q ss_pred ccCcccEEEEcCCCchhhHHH-HHHhccCC----cEEEEecccc
Q 014661 344 VRGESHLLLVGDPGTGKSQFL-KFAAKLSN----RSVITTGLGS 382 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSqlL-~~~~~~~p----~~v~~~G~~s 382 (420)
.+|++ +++.|.||+|||+|+ .++..++. +..|.|...+
T Consensus 240 ~~G~l-~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 240 RGGEV-IMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp CTTCE-EEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred CCCeE-EEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 35655 688999999999984 45555553 4678887765
No 471
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=76.48 E-value=1.2 Score=43.18 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=21.6
Q ss_pred cccCcccEEEEcCCCchhhHHHHHHh
Q 014661 343 KVRGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 343 ~~Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
..+..+.|||+|.+|.|||+++|...
T Consensus 29 ~~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 29 RSARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HhcCccEEEEECCCCCcHHHHHHHHH
Confidence 34667899999999999999999873
No 472
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=76.17 E-value=1.4 Score=38.19 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=18.4
Q ss_pred ccEEEEcCCCchhhHHHHHHhc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.-+||.|++|+|||++.....+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999988776554
No 473
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=76.07 E-value=1.3 Score=45.11 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.0
Q ss_pred ccCcccEEEEcCCCchhhHHHHHHh
Q 014661 344 VRGESHLLLVGDPGTGKSQFLKFAA 368 (420)
Q Consensus 344 ~Rg~ihiLlvGdpg~gKSqlL~~~~ 368 (420)
+...-|+|+.|.+|+|||.+|+...
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHH
Confidence 3445799999999999999998864
No 474
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=75.96 E-value=1.5 Score=38.67 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=18.0
Q ss_pred EEEEcCCCchhhHHHHHHhcc
Q 014661 350 LLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~ 370 (420)
.+|+|+.|+|||.||.++.-+
T Consensus 26 ~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578899999999999988643
No 475
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=75.64 E-value=1.4 Score=39.93 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.2
Q ss_pred cccEEEEcCCCchhhHHHHHHhccCC
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-..|.|.|.||+|||++.+..++...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999888443
No 476
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=75.50 E-value=1.4 Score=43.45 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=19.5
Q ss_pred cCcccEEEEcCCCchhhHHHHHH
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFA 367 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~ 367 (420)
..+-|+|++|.+|+|||++++.+
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~~~l 73 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLLREL 73 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHH
T ss_pred cCcceEEEECCCCCCHHHHHHHH
Confidence 35679999999999999987654
No 477
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=75.04 E-value=1.4 Score=40.99 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.9
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
..|.|.|.||+|||++.+..+++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 46999999999999999999875
No 478
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.96 E-value=1.5 Score=43.39 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=20.2
Q ss_pred ccEEEEcCCCchhhHHHHHHhccC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.-|+|+|-||+|||++.+..++-.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 458899999999999999876544
No 479
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=74.96 E-value=2.3 Score=41.28 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.3
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.+++++|.||+|||+|++....-
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 47999999999999999988654
No 480
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=74.91 E-value=1.6 Score=39.34 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=22.7
Q ss_pred CcccCcccEEEEcCCCchhhHHH-HHHhccCC---cEEEEecc
Q 014661 342 TKVRGESHLLLVGDPGTGKSQFL-KFAAKLSN---RSVITTGL 380 (420)
Q Consensus 342 ~~~Rg~ihiLlvGdpg~gKSqlL-~~~~~~~p---~~v~~~G~ 380 (420)
.+.+|.+ +++.|+||+|||++| +.+.+... +..++++.
T Consensus 8 ~~~~G~i-~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~ 49 (223)
T 2b8t_A 8 SKKIGWI-EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 49 (223)
T ss_dssp ---CCEE-EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCcEE-EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 3456665 677899999999954 44444432 44555433
No 481
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=74.83 E-value=1.5 Score=41.41 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=26.0
Q ss_pred cCcccEEEEcCCCchhhHHHHHHh-ccC---CcEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAA-KLS---NRSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~-~~~---p~~v~~~G~~s 382 (420)
+|++ +++.|.||+|||+|+...+ .++ -+.+|.|...+
T Consensus 67 ~G~l-~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 67 RRNF-VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp TTCE-EEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred CCcE-EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 4444 8889999999999865443 443 35678877654
No 482
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=74.55 E-value=1.4 Score=44.51 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=26.3
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCC---cEEEEecc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGL 380 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p---~~v~~~G~ 380 (420)
+|.+ ++|+|.+|+|||+|++.++.+.. ..|+..|.
T Consensus 292 ~GeV-I~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~ 329 (503)
T 2yhs_A 292 APFV-ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG 329 (503)
T ss_dssp TTEE-EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCeE-EEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC
Confidence 3444 88999999999999999987753 34666543
No 483
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=74.25 E-value=1.4 Score=45.41 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.2
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-.+.|+|.+|+|||+|++.++...+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 3589999999999999999998764
No 484
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=73.96 E-value=2.9 Score=36.22 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=22.2
Q ss_pred EEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
+|++|.+|+|||++....+.-..+.+|+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCeEEEe
Confidence 79999999999999776553354567763
No 485
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=73.91 E-value=1.8 Score=41.61 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.0
Q ss_pred ccEEEEcCCCchhhHHHHHHhc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
..|.++|.||+|||+|+...+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999987654
No 486
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=73.74 E-value=2.1 Score=44.59 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=22.1
Q ss_pred EEEEcCCCchhhHHHHHHhccCCc
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLSNR 373 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~p~ 373 (420)
+.|+|..|.|||+||+.++.+.+.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 789999999999999999998864
No 487
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=73.38 E-value=1.6 Score=42.25 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=27.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhccCC---cEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~~~p---~~v~~~G~~s 382 (420)
+|. -++|+|.+|+|||++++..+.+.+ ..|+..|.-.
T Consensus 156 ~g~-vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 156 KPA-VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SSE-EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCe-EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 344 488999999999999999988753 3466666543
No 488
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=73.38 E-value=1.4 Score=44.38 Aligned_cols=33 Identities=18% Similarity=0.011 Sum_probs=25.5
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCCc---EEEEecc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGL 380 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p~---~v~~~G~ 380 (420)
=-+.|+|..|.|||+||+.++.+.+. .++..|+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 65 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT 65 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 35789999999999999999988654 2444444
No 489
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=72.92 E-value=1.8 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.2
Q ss_pred cEEEEcCCCchhhHHHHHHhccC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~ 371 (420)
.++|+|+||+|||+|++.+++..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 69999999999999998777653
No 490
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=72.75 E-value=1.8 Score=44.48 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=21.9
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~ 369 (420)
.+...|+++|.||+|||+|+++...
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg 87 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLE 87 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999998864
No 491
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=72.44 E-value=1.8 Score=40.52 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=21.9
Q ss_pred ccEEEEcCCCchhhHHHHHHhccCC
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
.-|.++|.+|+|||+|++..+.+.+
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999998887765
No 492
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=72.37 E-value=2 Score=36.94 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.0
Q ss_pred cEEEEcCCCchhhHHHHHHhcc
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~ 370 (420)
-+.++|.+|+|||+|++.....
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999987754
No 493
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=72.20 E-value=2.3 Score=41.17 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.1
Q ss_pred ccEEEEcCCCchhhHHHHHHhcc
Q 014661 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 348 ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.+++++|.||+|||+|++....-
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 47999999999999999987654
No 494
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=71.83 E-value=3 Score=40.01 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=24.0
Q ss_pred cEEEEcCCCchhhHHHHHHhccCCcEEEEe
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p~~v~~~ 378 (420)
-|.|+|.+|+|||+|.+..++-.+ +..++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~-~~iis 37 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN-GEIIS 37 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT-EEEEE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC-Cceec
Confidence 589999999999999999988776 34444
No 495
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=71.81 E-value=8.5 Score=30.39 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=33.0
Q ss_pred EEEEEEecCccC--ceecCCeEEEEEEEEeeecCCCcCcccccceEEEEeeEEEc
Q 014661 221 SILVILKDDLVD--IVKAGDDVIVTGILTAKWSPDLKDVRCDLDPVLIANHVRRT 273 (420)
Q Consensus 221 ~i~v~L~~dLv~--~~~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~i~a~~I~~~ 273 (420)
.|.|.+.+++-. .+.|+|+|+|.|-+-..|. ..-|++.+|+..
T Consensus 63 ~I~VeId~~~w~g~~v~p~~~Vri~GevDkd~~----------~~eIdV~~i~~~ 107 (109)
T 1nnx_A 63 TINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWN----------SVEIDVKQIRKV 107 (109)
T ss_dssp EEEEECCGGGSTTCCCCTTSCEEEEEEEEEETT----------EEEEEEEEEEEC
T ss_pred cEEEEEChhhcCCcccCCCCEEEEEEEECCCCC----------ceEEEEEEEEEc
Confidence 477888887665 7899999999999986553 235778888764
No 496
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=71.66 E-value=2 Score=44.65 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=0.0
Q ss_pred EEEEcCCCchhhHHHHHHhccCC
Q 014661 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 350 iLlvGdpg~gKSqlL~~~~~~~p 372 (420)
+.|+|..|.|||+||+.++.+.+
T Consensus 120 ~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 120 VGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCChHHHHHHHHhCCCC
No 497
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=71.47 E-value=2 Score=42.90 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=25.8
Q ss_pred cCcccEEEEcCCCchhhHHHHHHhc-cCC----cEEEEecccc
Q 014661 345 RGESHLLLVGDPGTGKSQFLKFAAK-LSN----RSVITTGLGS 382 (420)
Q Consensus 345 Rg~ihiLlvGdpg~gKSqlL~~~~~-~~p----~~v~~~G~~s 382 (420)
+|++ +++.|.||+|||+|+...+. +++ +..|.+...+
T Consensus 202 ~G~l-iiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 202 RSDL-IIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp TTCE-EEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CCCE-EEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4444 88899999999998765543 433 4577776654
No 498
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=71.46 E-value=1.6 Score=42.32 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.7
Q ss_pred cEEEEcCCCchhhHHHHHHhccCC
Q 014661 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (420)
Q Consensus 349 hiLlvGdpg~gKSqlL~~~~~~~p 372 (420)
-..|+|+.|.|||.||+++.-+++
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~~ 51 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLALT 51 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHhcc
Confidence 478999999999999999986553
No 499
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=71.36 E-value=2.1 Score=41.88 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.0
Q ss_pred cccEEEEcCCCchhhHHHHHHhcc
Q 014661 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 347 ~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.++|.++|+++.|||+|+......
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 478999999999999999887653
No 500
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=71.25 E-value=1.9 Score=41.16 Aligned_cols=29 Identities=38% Similarity=0.556 Sum_probs=22.9
Q ss_pred CcccCcccEEEEcCCCchhhHHHHHHhcc
Q 014661 342 TKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (420)
Q Consensus 342 ~~~Rg~ihiLlvGdpg~gKSqlL~~~~~~ 370 (420)
.+.|..+.+||+|..+.|||+++|-..-+
T Consensus 2 ~~~~~~~klLlLG~geSGKSTi~KQmkii 30 (327)
T 3ohm_A 2 ADARRELKLLLLGTGESGKSTFIKQMRII 30 (327)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred chhcccceEEEEcCCCccHHHHHHHHHHH
Confidence 45678899999999999999999976544
Done!