Your job contains 1 sequence.
>014662
MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC
AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESAC
EQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINST
TQNRDQIHGSANNPPLPKLCCSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLN
HSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQPACSNAASADSIMST
KTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSAS
RSKAVLRYKEKKKTRKFDKRVRYASRKARADVRRRVKGRFVKAGEAYDYDPLTQTETRSY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014662
(420 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2164718 - symbol:BBX8 "B-box domain protein 8"... 582 1.3e-86 2
TAIR|locus:2091082 - symbol:COL9 "CONSTANS-like 9" specie... 581 2.0e-56 1
TAIR|locus:2129860 - symbol:BBX9 "B-box domain protein 9"... 332 7.8e-48 3
TAIR|locus:2088748 - symbol:BBX10 "B-box domain protein 1... 323 7.6e-44 2
TAIR|locus:2199262 - symbol:BBX27 "B-box domain protein 2... 294 2.1e-32 2
TAIR|locus:2051104 - symbol:BBX12 "B-box domain protein 1... 316 7.7e-31 2
TAIR|locus:2010504 - symbol:BBX13 "B-box domain protein 1... 326 2.1e-29 1
TAIR|locus:2043288 - symbol:AT2G47890 species:3702 "Arabi... 282 9.7e-25 1
UNIPROTKB|Q9FRZ6 - symbol:Q9FRZ6 "Hd1" species:4530 "Oryz... 208 2.2e-16 1
TAIR|locus:2047246 - symbol:COL3 "CONSTANS-like 3" specie... 202 2.0e-14 1
UNIPROTKB|Q9FRZ7 - symbol:Hd1 "Hd1 protein" species:39946... 206 2.2e-14 1
UNIPROTKB|Q9FE92 - symbol:Hd1 "Heading day 1" species:453... 208 2.7e-14 1
TAIR|locus:2143221 - symbol:COL1 "CONSTANS-like 1" specie... 203 6.1e-14 1
TAIR|locus:2143206 - symbol:CO "CONSTANS" species:3702 "A... 203 7.5e-14 1
TAIR|locus:2074587 - symbol:COL2 "CONSTANS-like 2" specie... 194 6.5e-13 1
UNIPROTKB|Q9FDX8 - symbol:HD1 "Zinc finger protein HD1" s... 194 1.0e-12 1
TAIR|locus:2050130 - symbol:BBX18 "B-box domain protein 1... 161 3.3e-11 1
TAIR|locus:2061330 - symbol:STH "salt tolerance homologue... 167 8.0e-11 1
TAIR|locus:2172545 - symbol:COL5 "CONSTANS-like 5" specie... 171 3.5e-10 2
TAIR|locus:2120207 - symbol:BZS1 "BZS1" species:3702 "Ara... 159 1.4e-09 1
TAIR|locus:2198841 - symbol:STO "SALT TOLERANCE" species:... 158 2.3e-09 1
TAIR|locus:1009023318 - symbol:BBX30 "B-box domain protei... 138 1.1e-08 1
TAIR|locus:2005624 - symbol:BBX21 "B-box domain protein 2... 157 1.1e-08 1
TAIR|locus:2195643 - symbol:BBX26 "B-box domain protein 2... 145 9.9e-08 1
TAIR|locus:2122759 - symbol:bbx23 "B-box domain protein 2... 127 1.7e-07 1
TAIR|locus:2095562 - symbol:BBX31 "B-box domain protein 3... 121 7.5e-07 1
TAIR|locus:2131709 - symbol:BBX28 "B-box domain protein 2... 135 9.1e-07 1
TAIR|locus:2147274 - symbol:BBX29 "B-box domain protein 2... 129 4.1e-06 1
TAIR|locus:2207155 - symbol:AT1G05290 species:3702 "Arabi... 109 9.8e-06 2
TAIR|locus:2092940 - symbol:BBX32 "B-box domain protein 3... 125 1.5e-05 1
TAIR|locus:2031180 - symbol:BBX15 "B-box domain protein 1... 116 0.00068 1
>TAIR|locus:2164718 [details] [associations]
symbol:BBX8 "B-box domain protein 8" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005886 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB023039 EMBL:AY039957 EMBL:AY142607
IPI:IPI00527282 RefSeq:NP_199636.1 UniGene:At.7080
ProteinModelPortal:Q9LUA9 IntAct:Q9LUA9 STRING:Q9LUA9
EnsemblPlants:AT5G48250.1 GeneID:834878 KEGG:ath:AT5G48250
TAIR:At5g48250 eggNOG:NOG248444 HOGENOM:HOG000116529
InParanoid:Q9LUA9 OMA:ESACEQG PhylomeDB:Q9LUA9
ProtClustDB:CLSN2684850 Genevestigator:Q9LUA9 GermOnline:AT5G48250
Uniprot:Q9LUA9
Length = 373
Score = 582 (209.9 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 107/162 (66%), Positives = 125/162 (77%)
Query: 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
MGYMCDFCG+QRS+VYCRSDAACLCLSCDRNVH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRC 60
Query: 61 AEERVSLCQNCDWIGHG--TSTSASSHKRQTINCYSGCPSASELSSIWSFVLDF--PSGG 116
++ERVSLCQNCDW GH ST+ S HKRQTINCYSGCPS++ELSSIWSF +D S
Sbjct: 61 SDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAE 120
Query: 117 ESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEAND 158
ESACEQ +GLM+I ++ G + ++ Q + D
Sbjct: 121 ESACEQGMGLMTIDEDGTGEKSGVQKINVEQPETSSAAQGMD 162
Score = 303 (111.7 bits), Expect = 1.3e-86, Sum P(2) = 1.3e-86
Identities = 75/182 (41%), Positives = 100/182 (54%)
Query: 246 LENGGIESLFGTKDMSAADSNCQGAVAA--EGSSAGLVNAMQPACSNAASADSIMSTKTE 303
LEN E LFG+ S+ G + + E A + QPA SN ASADS M+ +TE
Sbjct: 196 LEN--YEELFGSAFNSSRYLFEHGGIGSLFEKDEAHEGSMQQPALSNNASADSFMTCRTE 253
Query: 304 PILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSML-LMGEP-PWCPPCPETSFTSA-- 359
PI+C+++K HS++SFSG+TG+SNAGD+Q+C ASSM L EP PWC P + S+
Sbjct: 254 PIICYSSKPAHSNISFSGITGESNAGDFQDCGASSMKQLSREPQPWCHPTAQDIIASSHA 313
Query: 360 -SRSKAVLXXXXXXXXXXXXXXXXYASXXXXXXXXXXXXXXFVKAGEAYDYDPLTQTETR 418
+R+ AV+ Y S FVK+GEAYDYDP++ T R
Sbjct: 314 TTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYDPMSPT--R 371
Query: 419 SY 420
SY
Sbjct: 372 SY 373
Score = 171 (65.3 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 79/275 (28%), Positives = 118/275 (42%)
Query: 47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTI--NCYSGCPS---ASE 101
+C+ C Q ++V C + LC +CD H + + H R + C + S + E
Sbjct: 4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDE 63
Query: 102 LSSI-----WSFVLDFPSGGESACE-QELGLMSITDNSIKNS--WG----PNEDSISQNA 149
S+ WS S S + Q + S +S + S W N S ++A
Sbjct: 64 RVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAEESA 123
Query: 150 AGGGVEANDVCD---ADKSNVRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKD 206
G+ + + +KS V+ P +S Q D H S +P+ S K+
Sbjct: 124 CEQGMGLMTIDEDGTGEKSGVQKINVEQPETSSAAQGMD--HSS-----VPENS-SMAKE 175
Query: 207 LAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELLENGGIESLFGTKDMSAADSN 266
L CEDD + DE+DL ENYEELFG N S L E+GGI SLF KD + S
Sbjct: 176 LGVCEDD-FNGNLISDEVDLALENYEELFGSAFNSSRYLFEHGGIGSLF-EKDEAHEGSM 233
Query: 267 CQGAVAAEGSSAGLVNAM-QPA-CSNAASADSIMS 299
Q A++ S+ + +P C ++ A S +S
Sbjct: 234 QQPALSNNASADSFMTCRTEPIICYSSKPAHSNIS 268
>TAIR|locus:2091082 [details] [associations]
symbol:COL9 "CONSTANS-like 9" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017
SMART:SM00336 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0007623 GO:GO:0008270 GO:GO:0003700
EMBL:AC009176 eggNOG:NOG248444 HOGENOM:HOG000116529
ProtClustDB:CLSN2684850 EMBL:AY049290 IPI:IPI00522412
RefSeq:NP_001030659.1 RefSeq:NP_001118599.1 RefSeq:NP_187422.1
RefSeq:NP_974250.1 UniGene:At.18337 STRING:Q9SSE5 PRIDE:Q9SSE5
EnsemblPlants:AT3G07650.1 EnsemblPlants:AT3G07650.2
EnsemblPlants:AT3G07650.3 EnsemblPlants:AT3G07650.4 GeneID:819956
KEGG:ath:AT3G07650 TAIR:At3g07650 InParanoid:Q9SSE5 OMA:TSHIQTE
PhylomeDB:Q9SSE5 Genevestigator:Q9SSE5 GermOnline:AT3G07650
GO:GO:0048579 Uniprot:Q9SSE5
Length = 372
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 116/193 (60%), Positives = 137/193 (70%)
Query: 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
MGYMCDFCG+QRS+VYCRSDAACLCLSCDR+VH ANALSKRHSRTL+CERCN+QPA VRC
Sbjct: 1 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRC 60
Query: 61 AEERVSLCQNCDWIGHG---------TSTSASSHKRQTINCYSGCPSASELSSIWSFVLD 111
EERVSLCQNCDW GH +STS HKRQTI+CYSGCPS+SEL+SIWSF LD
Sbjct: 61 VEERVSLCQNCDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSSSELASIWSFCLD 120
Query: 112 FPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGA 171
G+S CEQELG+M+I D+ GP + C+ DK +V VG+
Sbjct: 121 L--AGQSICEQELGMMNIDDD------GPTDKK--------------TCNEDKKDVLVGS 158
Query: 172 TSVPGINSTTQNR 184
+S+P +S Q +
Sbjct: 159 SSIPETSSVPQGK 171
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 111/389 (28%), Positives = 178/389 (45%)
Query: 47 LCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIW 106
+C+ C Q ++V C + LC +CD H + + H R + C + +
Sbjct: 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLV-----CERCNAQPATV 58
Query: 107 SFVLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSN 166
V + S ++ C+ S +NS +S P + + G ++ ++ ++
Sbjct: 59 RCVEERVSLCQN-CDWSGHNNSNNNNSSSSSTSPQQHKRQTISCYSGCPSS----SELAS 113
Query: 167 VRVGATSVPGINSTTQNRDQIHGSANNPPLPKLCCSATKDL-----AFCEDDDLYEDFNM 221
+ + G + Q ++ + P K C KD+ + E + + +
Sbjct: 114 IWSFCLDLAGQSICEQELGMMNIDDDGPTDKKTCNEDKKDVLVGSSSIPETSSVPQGKSS 173
Query: 222 DEMDLNFENYEELFG-VTLNHSEELLENGGIESLFGTKDMSAADSNCQGAVAA-----EG 275
D+ ++ +G + ++ + LEN E LFGT + + G + + +
Sbjct: 174 SAKDVGMCE-DDFYGNLGMDEVDMALEN--YEELFGTAFNPSEELFGHGGIDSLFHKHQT 230
Query: 276 SSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECD 335
+ G N++QPA SN DS MS+KTEPI+CF +K HS++SFSG+TG+S+AGD+QEC
Sbjct: 231 APEG-GNSVQPAGSN----DSFMSSKTEPIICFASKPAHSNISFSGVTGESSAGDFQECG 285
Query: 336 ASSML-LMGEPPWCPPCPETSFT---SASRSKAVLXXXXXXXXXXXXXXXXYASXXXXXX 391
ASS + L GEPPW PP + + S +R+ AV+ YAS
Sbjct: 286 ASSSIQLSGEPPWYPPTLQDNNACSHSVTRNNAVMRYKEKKKARKFDKRVRYASRKARAD 345
Query: 392 XXXXXXXXFVKAGEAYDYDPLTQTETRSY 420
FVKAGEAYDYDPLT T RSY
Sbjct: 346 VRRRVKGRFVKAGEAYDYDPLTPT--RSY 372
>TAIR|locus:2129860 [details] [associations]
symbol:BBX9 "B-box domain protein 9" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006863 "purine
nucleobase transport" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:Z97338 EMBL:AL161541 GO:GO:0046872
GO:GO:0008270 GO:GO:0003700 HOGENOM:HOG000116529 IPI:IPI00529586
PIR:F71416 RefSeq:NP_193260.2 UniGene:At.54335
EnsemblPlants:AT4G15250.1 GeneID:827191 KEGG:ath:AT4G15250
TAIR:At4g15250 eggNOG:NOG321931 InParanoid:O23379 OMA:YQDCGIS
PhylomeDB:O23379 ProtClustDB:CLSN2915042 Genevestigator:O23379
GermOnline:AT4G15250 Uniprot:O23379
Length = 330
Score = 332 (121.9 bits), Expect = 7.8e-48, Sum P(3) = 7.8e-48
Identities = 57/110 (51%), Positives = 78/110 (70%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CDFCG +++++YC+SD+A LCL+CD NVH AN LS+RH+R+LLCE+C+ QP V C E
Sbjct: 5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNEN 64
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPS 114
VSLCQ C W ++ + H+ Q++N YS CPS S+ IWS L+ PS
Sbjct: 65 VSLCQGCQWTA--SNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLE-PS 111
Score = 144 (55.7 bits), Expect = 7.8e-48, Sum P(3) = 7.8e-48
Identities = 35/96 (36%), Positives = 43/96 (44%)
Query: 316 SLSFSGLTGDSNAGDYQECDASSMLLMGEPPWCPPCPETSFTSASRSKAVLXXXXXXXXX 375
SLS S LTG+SNA DYQ+C S L+G+ PW E SF R +A
Sbjct: 232 SLSMSNLTGESNATDYQDCGISPGFLIGDSPW-ESNVEVSFNPKLRDEAKKRYKQKKSKR 290
Query: 376 XXXXXXXYASXXXXXXXXXXXXXXFVKAGEAYDYDP 411
YAS FVK+GE ++YDP
Sbjct: 291 MFGKQIRYASRKARADTRKRVKGRFVKSGETFEYDP 326
Score = 53 (23.7 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKR 41
+C+ C Q + V+C ++ LC C L R
Sbjct: 47 LCEKCSLQPTAVHCMNENVSLCQGCQWTASNCTGLGHR 84
Score = 52 (23.4 bits), Expect = 7.8e-48, Sum P(3) = 7.8e-48
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 210 CEDDDLYEDFNMDEMDLNFENYEELFG 236
C DL E N+D+ LNF ++ G
Sbjct: 165 CSGLDLCEGINLDDAPLNFNASNDIIG 191
Score = 49 (22.3 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 26/110 (23%), Positives = 41/110 (37%)
Query: 201 CSATKDLAFCEDDDLYEDFNMDEMDLNFENYEELFGVTLNHSEELL-ENGGIESLFGTKD 259
C K L +C+ D N D +N + L + H+ LL E ++
Sbjct: 8 CGTEKALIYCKSDSAKLCLNCD---VNVHSANPL---SQRHTRSLLCEKCSLQPT-AVHC 60
Query: 260 MSAADSNCQGAVAAEGSSAGLVNAMQPA-----CSNAASADSIMSTKTEP 304
M+ S CQG + GL + +Q C + + I S+ EP
Sbjct: 61 MNENVSLCQGCQWTASNCTGLGHRLQSLNPYSDCPSPSDFGKIWSSTLEP 110
>TAIR|locus:2088748 [details] [associations]
symbol:BBX10 "B-box domain protein 10" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AP000739 HOGENOM:HOG000116529 EMBL:AB493626 IPI:IPI00533145
RefSeq:NP_188826.1 UniGene:At.53422 EnsemblPlants:AT3G21880.1
GeneID:821743 KEGG:ath:AT3G21880 TAIR:At3g21880 eggNOG:NOG290178
InParanoid:Q9LJ44 OMA:KKTRTFG PhylomeDB:Q9LJ44
ProtClustDB:CLSN2685267 Genevestigator:Q9LJ44 Uniprot:Q9LJ44
Length = 364
Score = 323 (118.8 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 54/112 (48%), Positives = 79/112 (70%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CD C ++++YC+SD A LCL+CD +VH AN LS RH R+L+CE+C SQPA +RC +E+
Sbjct: 5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEK 64
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGG 116
VS CQ C W H ++ S H+ Q++N +SGCPS ++ + +WS +L+ P G
Sbjct: 65 VSYCQGCHW--HESNCSELGHRVQSLNPFSGCPSPTDFNRMWSSILEPPVSG 114
Score = 156 (60.0 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 61/208 (29%), Positives = 87/208 (41%)
Query: 212 DDDLYEDFNMDEMDLNFENYEELFGVTLN-HSEELLENGGIESLFGTKDMSAADSNCQGA 270
++DL E N+D+ LNF+ +++ G + H E + T S SN
Sbjct: 175 EEDLCEGLNLDDAPLNFDVGDDIIGCSSEVHIEPDHTVPNCLLIDKTNTSSFTGSNFTVD 234
Query: 271 VAAEGSSAGLVNAMQPACSNAASADSIMSTKTEPILCFTAKQGHSSLSFSGLTGDSNAGD 330
A E S G Q N + P+L F Q H SL+ +TG++NA D
Sbjct: 235 KALEASPPG-----QQMNINTG-----LQLPLSPVL-FG--QIHPSLN---ITGENNAAD 278
Query: 331 YQECDASSMLLMGEPPWCPPCPETSFTSA---SRSKAVLXXXXXXXXXXXXXXXXYASXX 387
YQ+C S +M E PW ET+F + +R++A L YAS
Sbjct: 279 YQDCGMSPGFIMSEAPW-----ETNFEVSCPQARNEAKLRYKEKKLKRSFGKQIRYASRK 333
Query: 388 XXXXXXXXXXXXFVKAGEAYDYDPLTQT 415
FVKAG++YDYDP + T
Sbjct: 334 ARADTRKRVKGRFVKAGDSYDYDPSSPT 361
Score = 42 (19.8 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRH 42
+C+ C Q + + C + C C + H +N H
Sbjct: 47 ICEKCFSQPAAIRCLDEKVSYCQGC--HWHESNCSELGH 83
>TAIR|locus:2199262 [details] [associations]
symbol:BBX27 "B-box domain protein 27" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 PROSITE:PS50119 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC016447 EMBL:AK117800 IPI:IPI00522806
PIR:C96705 RefSeq:NP_176986.1 UniGene:At.35557
ProteinModelPortal:Q9C9F4 EnsemblPlants:AT1G68190.1 GeneID:843148
KEGG:ath:AT1G68190 TAIR:At1g68190 eggNOG:NOG293044
HOGENOM:HOG000111890 InParanoid:Q9C9F4 OMA:CIADTAN PhylomeDB:Q9C9F4
ProtClustDB:CLSN2717503 Genevestigator:Q9C9F4 GermOnline:AT1G68190
Uniprot:Q9C9F4
Length = 356
Score = 294 (108.6 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 51/112 (45%), Positives = 75/112 (66%)
Query: 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
M +C+FC R++VYC +D A LCL+CD VH AN+LS RH RT+LC+ C +QP +VRC
Sbjct: 10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRC 69
Query: 61 AEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF-VLD 111
+ ++ LC C+ HG +S H+R+ + CY+GCP A + + +W F V+D
Sbjct: 70 FDHKMFLCHGCNDKFHGGGSS--EHRRRDLRCYTGCPPAKDFAVMWGFRVMD 119
Score = 76 (31.8 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 23/100 (23%), Positives = 46/100 (46%)
Query: 205 KDLAFCEDDDLYED-FNMDEMDLNFENYEELFGVTLNHSEELLENGGI---ESLFGTKDM 260
+D+ CED +D F + ++DL F N+EE FG E + ++ + SL + +M
Sbjct: 230 QDIGVCEDTICSDDDFQIPDIDLTFRNFEEQFGAD---PEPIADSNNVFFVSSLDKSHEM 286
Query: 261 SAADSNCQGAVAAEGSSAGLVNAMQPACSNAAS-ADSIMS 299
S+ + A ++ ++ N S ++ ++S
Sbjct: 287 KTFSSSFNNPIFAPKPASSTISFSSSETDNPYSHSEEVIS 326
>TAIR|locus:2051104 [details] [associations]
symbol:BBX12 "B-box domain protein 12" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC002332 EMBL:BT002067 EMBL:AY128321
EMBL:BT006572 IPI:IPI00527026 IPI:IPI00539934 PIR:C84746
RefSeq:NP_850211.1 RefSeq:NP_973589.1 UniGene:At.43493
IntAct:O22800 STRING:O22800 EnsemblPlants:AT2G33500.1 GeneID:817915
KEGG:ath:AT2G33500 TAIR:At2g33500 eggNOG:NOG269245
HOGENOM:HOG000243233 InParanoid:O22800 OMA:ATHERSA PhylomeDB:O22800
ProtClustDB:CLSN2713949 Genevestigator:O22800 Uniprot:O22800
Length = 402
Score = 316 (116.3 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 50/120 (41%), Positives = 82/120 (68%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
C+FCG++ ++++CR+D A LCL CD++VH AN LS++H R+ +C+ C+ +P VRC +
Sbjct: 12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDN 71
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
+ LCQ CDW HG+ +S+++H+R + +SGCPS EL+++W +D + E EL
Sbjct: 72 LVLCQECDWDVHGSCSSSATHERSAVEGFSGCPSVLELAAVWG--IDLKGKKKEDDEDEL 129
Score = 39 (18.8 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 350 PCPETSFTSASRSKAV 365
P P TSFTS S+++
Sbjct: 205 PSPTTSFTSLLMSQSL 220
>TAIR|locus:2010504 [details] [associations]
symbol:BBX13 "B-box domain protein 13" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017
SMART:SM00336 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AC069471
HOGENOM:HOG000243233 ProtClustDB:CLSN2713949 EMBL:AY037206
EMBL:BT002681 IPI:IPI00538865 PIR:B86406 RefSeq:NP_174126.1
UniGene:At.19754 ProteinModelPortal:Q9C7E8 SMR:Q9C7E8 IntAct:Q9C7E8
STRING:Q9C7E8 PRIDE:Q9C7E8 EnsemblPlants:AT1G28050.1 GeneID:839698
KEGG:ath:AT1G28050 TAIR:At1g28050 eggNOG:NOG245106
InParanoid:Q9C7E8 OMA:SCGRYKQ PhylomeDB:Q9C7E8
Genevestigator:Q9C7E8 GermOnline:AT1G28050 Uniprot:Q9C7E8
Length = 433
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 59/143 (41%), Positives = 94/143 (65%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CDFCG++ ++++CR+D A LCL CD+ VH AN LS++H R+ +C+ C ++P VRC +
Sbjct: 9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDN 68
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
+ LCQ CDW HG+ + + +H R + +SGCPSA EL+++W LD G + E ++
Sbjct: 69 LILCQECDWDVHGSCSVSDAHVRSAVEGFSGCPSALELAALWG--LDLEQGRKDE-ENQV 125
Query: 125 GLMSIT-DN-SIK-NSW--GPNE 142
+M++ DN ++ +SW G NE
Sbjct: 126 PMMAMMMDNFGMQLDSWVLGSNE 148
>TAIR|locus:2043288 [details] [associations]
symbol:AT2G47890 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009611 "response to wounding"
evidence=RCA] [GO:0009805 "coumarin biosynthetic process"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AC005309 EMBL:AC006072 EMBL:BT023413 IPI:IPI00543399
PIR:G84920 RefSeq:NP_182310.1 UniGene:At.12948 STRING:O82256
EnsemblPlants:AT2G47890.1 GeneID:819401 KEGG:ath:AT2G47890
TAIR:At2g47890 eggNOG:NOG271369 HOGENOM:HOG000240051
InParanoid:O82256 OMA:CSRHARA PhylomeDB:O82256
ProtClustDB:CLSN2683730 Genevestigator:O82256 Uniprot:O82256
Length = 332
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 48/102 (47%), Positives = 69/102 (67%)
Query: 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
+CD+C ++VYC++D+A LCL+CD+ VH+AN L +H R+LLC+ CN P+ + C E
Sbjct: 12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETE 71
Query: 64 RVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSI 105
R LCQNCDW H + S+S H R+ ++GCPS EL +I
Sbjct: 72 RSVLCQNCDWQHH--TASSSLHSRRPFEGFTGCPSVPELLAI 111
>UNIPROTKB|Q9FRZ6 [details] [associations]
symbol:Q9FRZ6 "Hd1" species:4530 "Oryza sativa" [GO:0003677
"DNA binding" evidence=ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=ISS] [GO:0010229 "inflorescence development" evidence=IGI]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] InterPro:IPR000315
PROSITE:PS50119 SMART:SM00336 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0010229 GO:GO:0048571
GO:GO:0048572 EMBL:AB041841 Gramene:Q9FRZ6 Genevestigator:Q9FRZ6
Uniprot:Q9FRZ6
Length = 259
Score = 208 (78.3 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 57/190 (30%), Positives = 86/190 (45%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CD C S+VYCR+DAA LC SCD VH AN ++ RH R +CE C PA + C +
Sbjct: 35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADA 94
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGC--PSASELSSIWSFVLDFPSGGESACEQ 122
+LC CD + + A H+R + P+ S L+ + +
Sbjct: 95 AALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATVLGDKDEEVDS 154
Query: 123 ELGLMSITDNSIKNSWG---PNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
L L +DN+ N+ N D+ + N++ G+ +V D+ VG S N
Sbjct: 155 WLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEV---DEYFDLVGYNSYYD-NR 210
Query: 180 TTQNRDQIHG 189
N+D+ +G
Sbjct: 211 IENNQDRQYG 220
>TAIR|locus:2047246 [details] [associations]
symbol:COL3 "CONSTANS-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010099 "regulation of
photomorphogenesis" evidence=IMP] [GO:0010161 "red light signaling
pathway" evidence=IMP] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC006585 EMBL:AC007266 GO:GO:0010161
GO:GO:0010099 HOGENOM:HOG000238833 EMBL:AY058130 EMBL:AY140103
EMBL:BT002107 EMBL:AY085729 IPI:IPI00519735 PIR:E84640
RefSeq:NP_180052.1 UniGene:At.24362 ProteinModelPortal:Q9SK53
IntAct:Q9SK53 STRING:Q9SK53 EnsemblPlants:AT2G24790.1 GeneID:817016
KEGG:ath:AT2G24790 TAIR:At2g24790 eggNOG:NOG277018
InParanoid:Q9SK53 OMA:TDSREND PhylomeDB:Q9SK53
ProtClustDB:CLSN2912944 Genevestigator:Q9SK53 Uniprot:Q9SK53
Length = 294
Score = 202 (76.2 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 43/115 (37%), Positives = 58/115 (50%)
Query: 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEE 63
+CD C + ++CR+DAA LC CD +H AN L+ RH R LCE C PA V C +
Sbjct: 7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKAD 66
Query: 64 RVSLCQNCDWIGHGTSTSASSHKRQTIN-CYSGCPSASELSSIWSFVLDFPSGGE 117
+LC CD H + + H+R I Y A SS +FV + GG+
Sbjct: 67 AAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFVDE--DGGD 119
Score = 126 (49.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR 44
++C+ C + V C++DAA LC++CDR++H AN LS+RH R
Sbjct: 49 WLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHER 90
>UNIPROTKB|Q9FRZ7 [details] [associations]
symbol:Hd1 "Hd1 protein" species:39946 "Oryza sativa Indica
Group" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 Pfam:PF00643
PROSITE:PS50119 SMART:SM00336 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0010229 GO:GO:0048571
GO:GO:0048572 EMBL:AB041839 EMBL:AB564434 Gramene:Q9FRZ7
Uniprot:Q9FRZ7
Length = 342
Score = 206 (77.6 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 58/187 (31%), Positives = 85/187 (45%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CD C S+VYCR+DAA LC SCD VH AN ++ RH R +CE C PA + C +
Sbjct: 35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACEQAPAALACRADA 94
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGC--PSASELSSIWSFVLDFPSGGESACEQ 122
+LC CD H + A H+R + P+ S L+ GG+ ++
Sbjct: 95 AALCVACDVQVHSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATV-LGGK---DE 150
Query: 123 ELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTTQ 182
E+ I N N ++ + N++ G+ +V D+ VG S N
Sbjct: 151 EVDSWIILSKDSNN----NNNNNNSNSSNNGMYFGEV---DEYFDLVGYNSYYD-NRIEN 202
Query: 183 NRDQIHG 189
N+DQ +G
Sbjct: 203 NQDQQYG 209
>UNIPROTKB|Q9FE92 [details] [associations]
symbol:Hd1 "Heading day 1" species:4530 "Oryza sativa"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0009909 GO:GO:0010229 GO:GO:0048571 GO:GO:0048572
EMBL:JN402207 EMBL:AB041840 EMBL:AB041842 Gramene:Q9FE92
Genevestigator:Q9FE92 Uniprot:Q9FE92
Length = 407
Score = 208 (78.3 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 57/190 (30%), Positives = 86/190 (45%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CD C S+VYCR+DAA LC SCD VH AN ++ RH R +CE C PA + C +
Sbjct: 35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADA 94
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGC--PSASELSSIWSFVLDFPSGGESACEQ 122
+LC CD + + A H+R + P+ S L+ + +
Sbjct: 95 AALCVACDVQVYSANPLARRHQRVPVAPLPAITIPATSVLAEAVVATATVLGDKDEEVDS 154
Query: 123 ELGLMSITDNSIKNSWG---PNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINS 179
L L +DN+ N+ N D+ + N++ G+ +V D+ VG S N
Sbjct: 155 WLLLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEV---DEYFDLVGYNSYYD-NR 210
Query: 180 TTQNRDQIHG 189
N+D+ +G
Sbjct: 211 IENNQDRQYG 220
>TAIR|locus:2143221 [details] [associations]
symbol:COL1 "CONSTANS-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0009909
EMBL:AL391144 EMBL:Y10555 EMBL:Y10556 EMBL:AY074369 EMBL:BT002363
IPI:IPI00520338 PIR:T51414 RefSeq:NP_197089.1 UniGene:At.24486
UniGene:At.48027 IntAct:O50055 STRING:O50055
EnsemblPlants:AT5G15850.1 GeneID:831442 KEGG:ath:AT5G15850
TAIR:At5g15850 eggNOG:NOG314154 HOGENOM:HOG000238833
InParanoid:O50055 OMA:QSCERAP PhylomeDB:O50055
ProtClustDB:CLSN2685199 Genevestigator:O50055 GermOnline:AT5G15850
Uniprot:O50055
Length = 355
Score = 203 (76.5 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 56/149 (37%), Positives = 70/149 (46%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CD C VYCR+D+A LC SCD VH AN L+ RH R +C+ C PA C +
Sbjct: 12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADA 71
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTI---NCYSGCPSASELSSIWSFVLDFPS----GGE 117
SLC CD H + A H+R I + YS +A+ S + V D + G E
Sbjct: 72 ASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATN-HSCETTVTDPENRLVLGQE 130
Query: 118 SACEQELGLMS-ITDNSIKNSWGPNEDSI 145
E E S + NS KNS N SI
Sbjct: 131 EEDEDEAEAASWLLPNSGKNSGNNNGFSI 159
>TAIR|locus:2143206 [details] [associations]
symbol:CO "CONSTANS" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IGI] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010018 "far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009908 GO:GO:0009909 EMBL:AL391144 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:X94937 EMBL:BT001926 EMBL:AY086574
IPI:IPI00535908 IPI:IPI00657421 PIR:A56133 RefSeq:NP_001031887.1
RefSeq:NP_197088.1 UniGene:At.18 IntAct:Q39057 MINT:MINT-6608985
STRING:Q39057 EnsemblPlants:AT5G15840.1 GeneID:831441
KEGG:ath:AT5G15840 TAIR:At5g15840 eggNOG:NOG306777
InParanoid:Q39057 KO:K12135 OMA:CHADSAY PhylomeDB:Q39057
Genevestigator:Q39057 GO:GO:0010018 Uniprot:Q39057
Length = 373
Score = 203 (76.5 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 52/151 (34%), Positives = 67/151 (44%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CD C VYC +D+A LC+SCD VH AN ++ RH R +CE C PA C +
Sbjct: 20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADD 79
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGES--ACEQ 122
SLC CD H + A H+R I SG S S +++ + E +Q
Sbjct: 80 ASLCTACDSEVHSANPLARRHQRVPILPISG-NSFSSMTTTHHQSEKTMTDPEKRLVVDQ 138
Query: 123 ELGLMSITDNSIKNSW-GPNEDSISQNAAGG 152
E G D SW PN D + N G
Sbjct: 139 EEGEEGDKDAKEVASWLFPNSDKNNNNQNNG 169
>TAIR|locus:2074587 [details] [associations]
symbol:COL2 "CONSTANS-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009658
"chloroplast organization" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:AC021640
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677
EMBL:AC068900 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009658 GO:GO:0009909 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:L81120 EMBL:L81119 EMBL:AF370149
EMBL:AY059092 EMBL:AY088779 IPI:IPI00518847 RefSeq:NP_186887.1
UniGene:At.10373 IntAct:Q96502 STRING:Q96502
EnsemblPlants:AT3G02380.1 GeneID:821298 KEGG:ath:AT3G02380
TAIR:At3g02380 eggNOG:NOG281690 InParanoid:Q96502 OMA:RVCEACE
PhylomeDB:Q96502 Genevestigator:Q96502 GermOnline:AT3G02380
Uniprot:Q96502
Length = 347
Score = 194 (73.4 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 39/103 (37%), Positives = 52/103 (50%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CD C VYC +D+A LC +CD VH AN ++ RH R +C+ C S PA C +
Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADA 75
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTI------NCYSGCPSASE 101
SLC CD H + A H+R I +C S PS ++
Sbjct: 76 ASLCTACDAEIHSANPLARRHQRVPILPLSANSCSSMAPSETD 118
>UNIPROTKB|Q9FDX8 [details] [associations]
symbol:HD1 "Zinc finger protein HD1" species:39947 "Oryza
sativa Japonica Group" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0045892 GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 EMBL:AP008212 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0009908 GO:GO:0009909 GO:GO:0010229
eggNOG:NOG281690 OMA:RVCEACE GO:GO:0048579 GO:GO:0048576
EMBL:AB041837 EMBL:AB041838 EMBL:AB375859 EMBL:AP003044
EMBL:AP005813 RefSeq:NP_001057378.1 UniGene:Os.1189 STRING:Q9FDX8
EnsemblPlants:LOC_Os06g16370.1 GeneID:4340746 KEGG:osa:4340746
Gramene:Q9FDX8 ProtClustDB:CLSN2696123 GO:GO:0048571 GO:GO:0048572
Uniprot:Q9FDX8
Length = 395
Score = 194 (73.4 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 59/188 (31%), Positives = 85/188 (45%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CD C S+VYCR+DAA LC SCD VH AN ++ RH R +CE C PA + C +
Sbjct: 35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRVCEACERAPAALACRADA 94
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSFVLDFPSGGESACEQEL 124
+LC CD H SA+ TI P+ S L+ + + L
Sbjct: 95 AALCVACDVQVH----SANPLPAITI------PATSVLAEAVVATATVLGDKDEEVDSWL 144
Query: 125 GLMSITDNSIKNSWG---PNEDSISQNAAGGGVEANDVCDADKSNVRVGATSVPGINSTT 181
L +DN+ N+ N D+ + N++ G+ +V D+ VG S N
Sbjct: 145 LLSKDSDNNNNNNNNNDNDNNDNNNSNSSNNGMYFGEV---DEYFDLVGYNSYYD-NRIE 200
Query: 182 QNRDQIHG 189
N+D+ +G
Sbjct: 201 NNQDRQYG 208
>TAIR|locus:2050130 [details] [associations]
symbol:BBX18 "B-box domain protein 18" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010264 "myo-inositol hexakisphosphate biosynthetic process"
evidence=RCA] InterPro:IPR000315 Pfam:PF00643 PROSITE:PS50119
SMART:SM00336 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008270
EMBL:AC006841 GO:GO:0003700 GO:GO:0005622 HOGENOM:HOG000239240
EMBL:AY060570 EMBL:AY125573 IPI:IPI00525924 PIR:H84599
RefSeq:NP_565507.1 UniGene:At.27367 ProteinModelPortal:Q9SJU5
SMR:Q9SJU5 STRING:Q9SJU5 EnsemblPlants:AT2G21320.1 GeneID:816671
KEGG:ath:AT2G21320 TAIR:At2g21320 eggNOG:NOG329451
InParanoid:Q9SJU5 OMA:KCNKLAS PhylomeDB:Q9SJU5
ProtClustDB:CLSN2914972 ArrayExpress:Q9SJU5 Genevestigator:Q9SJU5
Uniprot:Q9SJU5
Length = 172
Score = 161 (61.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 33/84 (39%), Positives = 42/84 (50%)
Query: 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL--------CERCN 52
M +CD C +IV+C +D A LC SCD VH N L+ RH R L C+ C
Sbjct: 1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICE 60
Query: 53 SQPALVRCAEERVSLCQNCDWIGH 76
+ PA C + SLC CD + H
Sbjct: 61 NAPAFFYCEIDGSSLCLQCDMVVH 84
>TAIR|locus:2061330 [details] [associations]
symbol:STH "salt tolerance homologue" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0019904 "protein domain specific binding"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0010224 "response to UV-B"
evidence=RCA] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] InterPro:IPR000315 Pfam:PF00643
PROSITE:PS50119 SMART:SM00336 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AC007169 HOGENOM:HOG000239240 UniGene:At.24192
UniGene:At.69838 EMBL:AF323666 EMBL:AF325077 EMBL:AF370311
EMBL:AY063097 IPI:IPI00545007 PIR:A84720 RefSeq:NP_565722.1
ProteinModelPortal:Q9SID1 SMR:Q9SID1 IntAct:Q9SID1 STRING:Q9SID1
EnsemblPlants:AT2G31380.1 GeneID:817696 KEGG:ath:AT2G31380
TAIR:At2g31380 eggNOG:NOG279894 InParanoid:Q9SID1 OMA:CAKCDVE
PhylomeDB:Q9SID1 ProtClustDB:CLSN2682276 Genevestigator:Q9SID1
GermOnline:AT2G31380 Uniprot:Q9SID1
Length = 238
Score = 167 (63.8 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 33/96 (34%), Positives = 49/96 (51%)
Query: 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL---------CERC 51
M CD C + + C +D A LC CD VH AN L+ +H R L C+ C
Sbjct: 1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60
Query: 52 NSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKR 87
+ A + C E+R LC++CD H +T +++H+R
Sbjct: 61 LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQR 96
>TAIR|locus:2172545 [details] [associations]
symbol:COL5 "CONSTANS-like 5" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB018118 HOGENOM:HOG000238833 EMBL:AY057632
EMBL:AY080747 EMBL:AY114006 EMBL:AY088432 IPI:IPI00531436
RefSeq:NP_568863.1 UniGene:At.20797 IntAct:Q9FHH8 STRING:Q9FHH8
PRIDE:Q9FHH8 EnsemblPlants:AT5G57660.1 GeneID:835872
KEGG:ath:AT5G57660 TAIR:At5g57660 eggNOG:NOG321782
InParanoid:Q9FHH8 OMA:YSSYTAT PhylomeDB:Q9FHH8
ProtClustDB:CLSN2917767 Genevestigator:Q9FHH8 GermOnline:AT5G57660
Uniprot:Q9FHH8
Length = 355
Score = 171 (65.3 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 32/89 (35%), Positives = 46/89 (51%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
CD C + V+CR D+A LC++CD +H RH R +CE C PA V C +
Sbjct: 22 CDACKSVTAAVFCRVDSAFLCIACDTRIHSFT----RHERVWVCEVCEQAPAAVTCKADA 77
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCY 93
+LC +CD H + AS H+R + +
Sbjct: 78 AALCVSCDADIHSANPLASRHERVPVETF 106
Score = 119 (46.9 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 3 YMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR 44
++C+ C + V C++DAA LC+SCD ++H AN L+ RH R
Sbjct: 59 WVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHER 100
Score = 38 (18.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 314 HSSLSFSGLTGDSNAGDYQECDASSM 339
++S++ S +T + GD+Q ASSM
Sbjct: 261 NNSVNRSTITSSTTGGDHQ---ASSM 283
>TAIR|locus:2120207 [details] [associations]
symbol:BZS1 "BZS1" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010200 "response to chitin"
evidence=IEP] [GO:0080167 "response to karrikin" evidence=IEP]
[GO:0009741 "response to brassinosteroid stimulus" evidence=IEP]
InterPro:IPR000315 Pfam:PF00643 PROSITE:PS50119 SMART:SM00336
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0080167
GO:GO:0010200 EMBL:AL035679 EMBL:AL161594 EMBL:AK118879
EMBL:BT028893 IPI:IPI00535007 PIR:T06067 RefSeq:NP_195618.2
UniGene:At.31120 ProteinModelPortal:Q0IGM7 SMR:Q0IGM7 PRIDE:Q0IGM7
EnsemblPlants:AT4G39070.1 GeneID:830062 KEGG:ath:AT4G39070
TAIR:At4g39070 eggNOG:NOG257043 HOGENOM:HOG000239240
InParanoid:Q0IGM7 OMA:DICGERR PhylomeDB:Q0IGM7
ProtClustDB:CLSN2915067 Genevestigator:Q0IGM7 GO:GO:0009741
Uniprot:Q0IGM7
Length = 242
Score = 159 (61.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 39/111 (35%), Positives = 54/111 (48%)
Query: 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR-TL---------LCER 50
M C C + + V+C +D A LC CDR+VH AN L+ +H R +L LC+
Sbjct: 1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60
Query: 51 CNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCY--SGCPSA 99
C + AL+ C E+R LC+ CD H + H R + S PSA
Sbjct: 61 CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSA 111
Score = 122 (48.0 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 32/106 (30%), Positives = 45/106 (42%)
Query: 4 MCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL--------------CE 49
+CD CG++R++++C+ D A LC CD +H AN +K+H+R LL
Sbjct: 57 LCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRAS 116
Query: 50 RCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSG 95
NS A R S+ SS T NCY G
Sbjct: 117 NSNSAAAFGRAKTRPKSVSSEVP-SSASNEVFTSSSSTTTSNCYYG 161
>TAIR|locus:2198841 [details] [associations]
symbol:STO "SALT TOLERANCE" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009416 "response to light stimulus"
evidence=IEP] [GO:0009640 "photomorphogenesis" evidence=IGI]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009651
"response to salt stress" evidence=IGI;RCA] [GO:0009737 "response
to abscisic acid stimulus" evidence=RCA] [GO:0046686 "response to
cadmium ion" evidence=RCA] [GO:0003677 "DNA binding" evidence=ISS]
InterPro:IPR000315 Pfam:PF00643 PROSITE:PS50119 SMART:SM00336
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0009651 GO:GO:0008270 GO:GO:0003700
GO:GO:0080167 GO:GO:0009640 EMBL:AC024174 HOGENOM:HOG000239240
ProtClustDB:CLSN2682276 EMBL:X95572 EMBL:AY079377 EMBL:AY045794
IPI:IPI00518701 PIR:E86195 RefSeq:NP_172094.1 UniGene:At.23289
UniGene:At.38035 UniGene:At.70752 ProteinModelPortal:Q96288
SMR:Q96288 IntAct:Q96288 MINT:MINT-189223 STRING:Q96288
EnsemblPlants:AT1G06040.1 GeneID:837113 KEGG:ath:AT1G06040
TAIR:At1g06040 eggNOG:NOG313367 InParanoid:Q96288 OMA:PRCDICQ
PhylomeDB:Q96288 Genevestigator:Q96288 Uniprot:Q96288
Length = 248
Score = 158 (60.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL---------CERC 51
M CD C + V C +D A LC CD +H AN L+ +H R L C+ C
Sbjct: 1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60
Query: 52 NSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKR 87
+ A + C E+R LC++CD H ++ +++H+R
Sbjct: 61 QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQR 96
Score = 111 (44.1 bits), Expect = 0.00089, P = 0.00089
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTL 46
CD C ++ + ++C D A LC CD ++H+AN+ S H R L
Sbjct: 57 CDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFL 98
>TAIR|locus:1009023318 [details] [associations]
symbol:BBX30 "B-box domain protein 30" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000315 Pfam:PF00643 PROSITE:PS50119
SMART:SM00336 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008270
GO:GO:0005622 EMBL:DQ487602 IPI:IPI00657516 RefSeq:NP_001031645.1
UniGene:At.63271 EnsemblPlants:AT4G15248.1 GeneID:3769879
KEGG:ath:AT4G15248 TAIR:At4g15248 OMA:ELCGENA PhylomeDB:Q1G3I2
Genevestigator:Q2V3I2 Uniprot:Q1G3I2
Length = 117
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERC 51
C+ CG+ + VYC +DAA LC CDR VH AN L++RH R ++C C
Sbjct: 32 CELCGENAT-VYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTC 77
>TAIR|locus:2005624 [details] [associations]
symbol:BBX21 "B-box domain protein 21" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009641 "shade avoidance"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR000315 Pfam:PF00643
PROSITE:PS50119 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 GO:GO:0009641 HOGENOM:HOG000239240 EMBL:AC006434
EMBL:AB493536 IPI:IPI00536705 PIR:G96785 RefSeq:NP_177686.1
UniGene:At.34761 UniGene:At.69592 ProteinModelPortal:Q9LQZ7
SMR:Q9LQZ7 IntAct:Q9LQZ7 STRING:Q9LQZ7 EnsemblPlants:AT1G75540.1
GeneID:843890 KEGG:ath:AT1G75540 TAIR:At1g75540 eggNOG:NOG315170
InParanoid:Q9LQZ7 OMA:CDICQDK PhylomeDB:Q9LQZ7
ProtClustDB:CLSN2682536 Genevestigator:Q9LQZ7 GermOnline:AT1G75540
Uniprot:Q9LQZ7
Length = 331
Score = 157 (60.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 52/186 (27%), Positives = 83/186 (44%)
Query: 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSR-TLL-----------C 48
M CD C + + V+C +D A LC CD VH AN L+ +H R +LL C
Sbjct: 1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60
Query: 49 ERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKRQTINCYSGCPSASELSSIWSF 108
+ C + AL+ C ++R LC++CD H + H R + +G S SS++
Sbjct: 61 DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLL---TGV-KLSATSSVYKP 116
Query: 109 VLDFPSGGESACEQELGLMSITDNSIKNSWGPNEDSISQNAAGGGVEA-NDVCDADKSNV 167
S S+ Q+ S+ +SI N P + +S ++ + + D S
Sbjct: 117 TSK--SSSSSSSNQDF---SVPGSSISNP-PPLKKPLSAPPQSNKIQPFSKINGGDASVN 170
Query: 168 RVGATS 173
+ G+TS
Sbjct: 171 QWGSTS 176
>TAIR|locus:2195643 [details] [associations]
symbol:BBX26 "B-box domain protein 26" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 PROSITE:PS50119 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0005622
EMBL:AC004473 IPI:IPI00523867 PIR:T02277 RefSeq:NP_176231.1
UniGene:At.52283 ProteinModelPortal:O80748
EnsemblPlants:AT1G60250.1 GeneID:842320 KEGG:ath:AT1G60250
TAIR:At1g60250 eggNOG:NOG305480 HOGENOM:HOG000115139 OMA:FERSCHG
PhylomeDB:O80748 ProtClustDB:CLSN2913661 Genevestigator:O80748
Uniprot:O80748
Length = 251
Score = 145 (56.1 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
M +C C ++++C ++A CL+CD N+ N + H R LC+ C+ P+++ C
Sbjct: 1 MAQVCHTCRHVTAVIHCVTEALNFCLTCD-NLRHHNNIHAEHVRYQLCDNCSMYPSILFC 59
Query: 61 AEERVSLCQNCDWIGHGTSTSASSHKRQTI 90
E+ + LCQ+C H + + + H+ Q +
Sbjct: 60 YEDGMVLCQSC--YSHHYNCATNGHQTQVV 87
>TAIR|locus:2122759 [details] [associations]
symbol:bbx23 "B-box domain protein 23" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 Pfam:PF00643 PROSITE:PS50119 SMART:SM00336
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008270 GO:GO:0003700
GO:GO:0005622 EMBL:AF096373 EMBL:AL161516 HOGENOM:HOG000239240
EMBL:AL049488 EMBL:AY122916 IPI:IPI00525768 PIR:T01973
RefSeq:NP_192762.1 UniGene:At.33641 ProteinModelPortal:O82617
SMR:O82617 EnsemblPlants:AT4G10240.1 GeneID:826615
KEGG:ath:AT4G10240 TAIR:At4g10240 eggNOG:NOG273282
InParanoid:O82617 OMA:TENSECS PhylomeDB:O82617
ProtClustDB:CLSN2915973 Genevestigator:O82617 Uniprot:O82617
Length = 162
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 34/102 (33%), Positives = 44/102 (43%)
Query: 1 MGYMCDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLL------------- 47
M C+ C + V C SD A LC CD VH AN L +RH R L
Sbjct: 1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60
Query: 48 --CERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSHKR 87
C+ C + C E+R LC +CD H + +SH+R
Sbjct: 61 PLCDICQERKGYFFCLEDRAMLCNDCDEAIH----TCNSHQR 98
>TAIR|locus:2095562 [details] [associations]
symbol:BBX31 "B-box domain protein 31" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010224 "response to UV-B" evidence=IEP;RCA] [GO:0009744
"response to sucrose stimulus" evidence=RCA] InterPro:IPR000315
Pfam:PF00643 SMART:SM00336 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 GO:GO:0010224
EMBL:AB028622 EMBL:AY086564 EMBL:AB493627 IPI:IPI00531471
RefSeq:NP_188827.1 UniGene:At.37979 ProteinModelPortal:Q9LRM4
EnsemblPlants:AT3G21890.1 GeneID:821744 KEGG:ath:AT3G21890
TAIR:At3g21890 eggNOG:NOG259331 HOGENOM:HOG000090727
InParanoid:Q9LRM4 OMA:CEADSAF PhylomeDB:Q9LRM4
ProtClustDB:CLSN2685268 Genevestigator:Q9LRM4 Uniprot:Q9LRM4
Length = 121
Score = 121 (47.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 26/56 (46%), Positives = 32/56 (57%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRC 60
C+ C S V+C +D+A LC CDR VH AN L+ RH R +LC C Q RC
Sbjct: 31 CELCDGDAS-VFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSC--QKLTRRC 83
>TAIR|locus:2131709 [details] [associations]
symbol:BBX28 "B-box domain protein 28" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 Pfam:PF00643 SMART:SM00336 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161566 GO:GO:0008270 GO:GO:0003700
GO:GO:0005622 EMBL:AL030978 IPI:IPI00524555 PIR:T05755
RefSeq:NP_194461.1 UniGene:At.28344 EnsemblPlants:AT4G27310.1
GeneID:828839 KEGG:ath:AT4G27310 TAIR:At4g27310 eggNOG:NOG263097
HOGENOM:HOG000115162 InParanoid:O81834 OMA:SAFKSTV PhylomeDB:O81834
ProtClustDB:CLSN2916189 Genevestigator:O81834 Uniprot:O81834
Length = 223
Score = 135 (52.6 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 36/102 (35%), Positives = 49/102 (48%)
Query: 1 MGYMCDFC-GDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNS-QP--A 56
MG CD C G R +YC SD A LC CD VH AN L +H+R LLC C S P A
Sbjct: 1 MGKKCDLCNGVAR--MYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLTPWKA 58
Query: 57 LVRCAEERVSLCQNCDWI-----GHGTSTSASSHKRQTINCY 93
S+C++C + G G + + ++ +N +
Sbjct: 59 TGLRLGPTFSVCESCVALKNAGGGRGNRVLSENRGQEEVNSF 100
>TAIR|locus:2147274 [details] [associations]
symbol:BBX29 "B-box domain protein 29" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009409 "response to cold" evidence=IEP] [GO:0009555 "pollen
development" evidence=IMP] InterPro:IPR000315 SMART:SM00336
EMBL:CP002688 GO:GO:0009555 GO:GO:0009409 GO:GO:0008270
GO:GO:0003700 GO:GO:0005622 HOGENOM:HOG000115162
ProtClustDB:CLSN2916189 EMBL:BT012358 EMBL:AK221519 IPI:IPI00528573
RefSeq:NP_200258.2 UniGene:At.43303 STRING:Q6NLH4
EnsemblPlants:AT5G54470.1 GeneID:835535 KEGG:ath:AT5G54470
TAIR:At5g54470 eggNOG:NOG303512 InParanoid:Q6NLH4 OMA:CESCLAR
Genevestigator:Q6NLH4 Uniprot:Q6NLH4
Length = 215
Score = 129 (50.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 46/146 (31%), Positives = 67/146 (45%)
Query: 5 CDFC-GDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQ-P--ALVRC 60
C+ C G R +YC SD A LC CD VH AN L +H R LLC C S P A
Sbjct: 6 CELCCGVAR--MYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHTPWKASGLN 63
Query: 61 AEERVSLCQNCDWIGHGTSTSAS------SHKRQTINCYSGCPSASELSSIWSFVLDFPS 114
VS+C++C ++S + + + + I C G S E S + +
Sbjct: 64 LGPTVSICESCLARKKNNNSSLAGRDQNLNQEEEIIGCNDGAESYDEESDEDEEEEEVEN 123
Query: 115 GG-ESACEQELGLMSITDNSIKNSWG 139
+A EQEL ++S + +S+ + G
Sbjct: 124 QVVPAAVEQELPVVS-SSSSVSSGEG 148
>TAIR|locus:2207155 [details] [associations]
symbol:AT1G05290 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002684 GO:GO:0003700 EMBL:DQ446230 IPI:IPI00535628
RefSeq:NP_172021.2 UniGene:At.51486 EnsemblPlants:AT1G05290.1
GeneID:837025 KEGG:ath:AT1G05290 TAIR:At1g05290 OMA:FEILQIF
PhylomeDB:Q1PFY3 ProtClustDB:CLSN2920218 ArrayExpress:Q1PFY3
Genevestigator:Q1PFY3 Uniprot:Q1PFY3
Length = 369
Score = 109 (43.4 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 22 ACLCLSCDRNVHLANALSK-RHSRTLLCERCNSQPALVRCAEERVSLCQNC 71
A LCL CD +H ++++ +SR LC C SQ ALV E+ + LCQ+C
Sbjct: 10 ARLCLQCDLKLHSKSSVNNYNYSRIPLCNNCVSQTALVESLEQGLCLCQSC 60
Score = 65 (27.9 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 41/176 (23%), Positives = 62/176 (35%)
Query: 240 NHSEELLENGGIESLFGTKDMSAADSNCQGAVAAEGSSAGLVNAMQP-ACSNAASADSIM 298
N E+L+ I+ L +D S +A G S+ + A +NA+S D +
Sbjct: 193 NPEEDLILTELIDEL--ARDNSETTPTNTLPTSASGMSSDIHKDYNTEALANASSQDYFI 250
Query: 299 STKTEPILCFTAKQGHSSLSFSGLTGDSNAGDYQECDASSMLLMGEP-PWCPPC--PETS 355
+ ++ AK+ + L+ NA +C S ++L E PW P
Sbjct: 251 NQ----MIGSKAKEETNDLAIL-----PNALVQLDCGQSQLILTDEMLPWENQTFVPVKG 301
Query: 356 FTSASRSKAVLXXXXXXXXXXXXXXXXYASXXXXXXXXXXXXXXFVKAGEAYDYDP 411
F+ R +A Y S F KAG YDYDP
Sbjct: 302 FSPKDREEAKKRYFEKKKKRKFGKQIRYESRKSTADTKKRMKGRFTKAGADYDYDP 357
>TAIR|locus:2092940 [details] [associations]
symbol:BBX32 "B-box domain protein 32" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010200 "response to chitin"
evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0009785 "blue
light signaling pathway" evidence=IMP] [GO:0010017 "red or far-red
light signaling pathway" evidence=IMP] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IEP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009909 "regulation of
flower development" evidence=IMP] GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003700 EMBL:AP000604
GO:GO:0009640 GO:GO:0010200 GO:GO:0009909 EMBL:BT005244
EMBL:AK117844 IPI:IPI00537563 RefSeq:NP_188752.1 UniGene:At.38107
IntAct:Q9LJB7 EnsemblPlants:AT3G21150.1 GeneID:821667
KEGG:ath:AT3G21150 TAIR:At3g21150 eggNOG:NOG279642
HOGENOM:HOG000090878 InParanoid:Q9LJB7 OMA:IISAVEM PhylomeDB:Q9LJB7
ProtClustDB:CLSN2915650 Genevestigator:Q9LJB7 Uniprot:Q9LJB7
Length = 225
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 42/136 (30%), Positives = 60/136 (44%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVRCAEER 64
C+ CG + + +C +D+A LC SCD H +N L RH R ++C C S +
Sbjct: 5 CELCGAEADL-HCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKS------LTQNF 57
Query: 65 VSLCQNCDWIGHGTSTSASSHKRQTINCYSG--CPSASELSSIWSFVLDFPSGGESACEQ 122
VS W T S SS +C S C S+SELSS V + G E+
Sbjct: 58 VS-GPLLPWPPRTTCCSESSSS----SCCSSLDCVSSSELSSTTRDV-NRARGRENRVNA 111
Query: 123 ELGLMSITDNSIKNSW 138
+ +++ D N W
Sbjct: 112 KAVAVTVADGIFVN-W 126
>TAIR|locus:2031180 [details] [associations]
symbol:BBX15 "B-box domain protein 15" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016020 "membrane" evidence=IDA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281 GO:GO:0016020
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AY093174
IPI:IPI00533844 PIR:E86384 RefSeq:NP_173915.2 UniGene:At.27494
EnsemblPlants:AT1G25440.1 GeneID:839130 KEGG:ath:AT1G25440
TAIR:At1g25440 eggNOG:NOG293508 HOGENOM:HOG000240360
InParanoid:Q8RWD0 OMA:SDEISHE PhylomeDB:Q8RWD0
ProtClustDB:CLSN2689085 Genevestigator:Q8RWD0 Uniprot:Q8RWD0
Length = 417
Score = 116 (45.9 bits), Expect = 0.00068, P = 0.00068
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 5 CDFCGDQRSIVYCRSDAACLCLSCDRNVHLANALSKRHSRTLLCERCNSQPALVR 59
CD C +R+ YC +D A LC SCD VH AN L++RH R L + PA+V+
Sbjct: 17 CDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHERVRLK---TASPAVVK 68
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.128 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 420 390 0.00094 117 3 11 23 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 31
No. of states in DFA: 617 (66 KB)
Total size of DFA: 274 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 34.54u 0.09s 34.63t Elapsed: 00:00:02
Total cpu time: 34.55u 0.09s 34.64t Elapsed: 00:00:03
Start: Sat May 11 11:28:08 2013 End: Sat May 11 11:28:11 2013