BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014662
         (420 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J0M|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
           Acts On Side Chains Of Xanthan
 pdb|1J0N|A Chain A, Crystal Structure Of Bacillus Sp. Gl1 Xanthan Lyase That
           Acts On Side Chains Of Xanthan
          Length = 752

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 19/97 (19%)

Query: 39  SKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSH--------KRQTI 90
           +KR +RT   ++ N++PA    A  R        WI HGT+ S +S+            +
Sbjct: 572 TKREARTGTWKQINNRPATPSTAVTR---NYETMWIDHGTNPSGASYGYVLLPNKTSAQV 628

Query: 91  NCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLM 127
             Y+  P+          ++   SG +S  E+ LGL+
Sbjct: 629 GAYAADPAIE--------IVVNTSGVQSVKEKTLGLV 657


>pdb|2E22|A Chain A, Crystal Structure Of Xanthan Lyase In Complex With Mannose
          Length = 752

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 19/97 (19%)

Query: 39  SKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSH--------KRQTI 90
           +KR +RT   ++ N++PA    A  R        WI HGT+ S +S+            +
Sbjct: 572 TKREARTGTWKQINNRPATPSTAVTR---NYETMWIDHGTNPSGASYGYVLLPNKTSAQV 628

Query: 91  NCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLM 127
             Y+  P+          ++   SG +S  E+ LGL+
Sbjct: 629 GAYAADPAIE--------IVVNTSGVQSVKEKTLGLV 657


>pdb|1X1H|A Chain A, Crystal Structure Of Xanthan Lyase (N194a)
 pdb|1X1I|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) Complexed With
           A Product
 pdb|1X1J|A Chain A, Crystal Structure Of Xanthan Lyase (N194a) With A
           Substrate
          Length = 752

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 19/97 (19%)

Query: 39  SKRHSRTLLCERCNSQPALVRCAEERVSLCQNCDWIGHGTSTSASSH--------KRQTI 90
           +KR +RT   ++ N++PA    A  R        WI HGT+ S +S+            +
Sbjct: 572 TKREARTGTWKQINNRPATPSTAVTR---NYETMWIDHGTNPSGASYGYVLLPNKTSAQV 628

Query: 91  NCYSGCPSASELSSIWSFVLDFPSGGESACEQELGLM 127
             Y+  P+          ++   SG +S  E+ LGL+
Sbjct: 629 GAYAADPAIE--------IVVNTSGVQSVKEKTLGLV 657


>pdb|1YPX|A Chain A, Crystal Structure Of The Putative Vitamin-B12 Independent
           Methionine Synthase From Listeria Monocytogenes,
           Northeast Structural Genomics Target Lmr13
          Length = 375

 Score = 28.5 bits (62), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 121 EQELGLMSITDNSIKNSWG-----PNEDSISQNAAGGGVEANDV 159
           ++E+GL SITD   + +W       N D +    A GG++ + V
Sbjct: 53  QKEVGLKSITDGEFRRAWWHFDFLENLDGVEGYDAAGGIQFSKV 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,194,356
Number of Sequences: 62578
Number of extensions: 415373
Number of successful extensions: 672
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 10
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)