BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014663
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 529 bits (1363), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/400 (63%), Positives = 312/400 (78%), Gaps = 5/400 (1%)
Query: 23 IAKKWRSLSGQNNWEGLLDPLDIDLRRYMIHYGEIAQAAYDTFNTEKASKYAGDSIYAKK 82
AK+WR LSGQN+W+G L PLD DLR Y+IHYGE AQA YDTFN S++AG SIY++K
Sbjct: 19 FAKRWRDLSGQNHWKGXLQPLDQDLREYIIHYGEXAQAGYDTFNINTESQFAGASIYSRK 78
Query: 83 DFFSKVGLDKGNPY-KYNVTKFFYATSQIHVPEAFIIVPLSREAWSKESNWMGYVAVATD 141
DFF+KVGL+ +PY KY VTKF YATS IHVPE+F++ P+SRE WSKESNW GYVAV D
Sbjct: 79 DFFAKVGLEIAHPYTKYKVTKFIYATSDIHVPESFLLFPISREGWSKESNWXGYVAVTDD 138
Query: 142 EGKAVLGRRDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSD 201
+G A+LGRRDIV++WRGS+Q LEWV D EF V+A KIFG +R D ++HQGWYSIY S
Sbjct: 139 QGTALLGRRDIVVSWRGSVQPLEWVEDFEFGLVNAIKIFG-ERNDQVQIHQGWYSIYXSQ 197
Query: 202 DQRSPFNKTSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVDIAANGFNKP 261
D+RSPF KT+ARDQV+ E+ RL+++YK+EE+SIT+ GHSLGAALATL+A DI ANG+N+P
Sbjct: 198 DERSPFTKTNARDQVLREVGRLLEKYKDEEVSITICGHSLGAALATLSATDIVANGYNRP 257
Query: 262 GGQPNKACPVTAIIFASPRVGDSTFKKVLSGYQDLRVLRIRNELDVVPKYPLIGYEDVGK 321
+P+K+CPVTA +FASPRVGDS F+K+ SG +D+RVLR RN DV+P YP IGY +VG
Sbjct: 258 KSRPDKSCPVTAFVFASPRVGDSDFRKLFSGLEDIRVLRTRNLPDVIPIYPPIGYSEVGD 317
Query: 322 ELTIDTTNSKYLKNGAANFSGWHNLEVYLHGVAGTQGRKGG--FQLEVNRDISLVNKTMD 379
E IDT S Y K+ N + +H LE YLHGVAGTQG F+L+V R I LVNK++D
Sbjct: 318 EFPIDTRKSPYXKS-PGNLATFHCLEGYLHGVAGTQGTNKADLFRLDVERAIGLVNKSVD 376
Query: 380 SLKDQYLVPVSWRILKNKGMVQQADGSWKLMDHEKDDDID 419
LKD+ VP WR+LKNKG QQ DGSW+L+DHE DD+ D
Sbjct: 377 GLKDECXVPGKWRVLKNKGXAQQDDGSWELVDHEIDDNED 416
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 33/181 (18%)
Query: 152 IVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFNKTS 211
+V+A+RGS WV D F + D G++S +
Sbjct: 76 VVLAFRGSYSVRNWVADATFVHTNP------GLCDGCLAELGFWSSWKL----------- 118
Query: 212 ARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVDIAANGFNKPGGQPNKACPV 271
RD +I E++ +V Q N E+ V GHSLGAA+ATL A D+ G+ P +
Sbjct: 119 VRDDIIKELKEVVAQNPNYEL--VVVGHSLGAAVATLAATDLRGKGY--PSAK------- 167
Query: 272 TAIIFASPRVGDSTFKKVLSGYQDLRVLRIRNELDVVPKYPLI--GYEDVGKELTIDTTN 329
+ASPRVG++ K ++ + R + D VPK PL+ GY V E I + N
Sbjct: 168 -LYAYASPRVGNAALAKYITAQGN--NFRFTHTNDPVPKLPLLSMGYVHVSPEYWITSPN 224
Query: 330 S 330
+
Sbjct: 225 N 225
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 106/259 (40%), Gaps = 54/259 (20%)
Query: 56 EIAQAAYDTFNTEKASKYAGDSIYAKKDFFSKVGLDKGNPYKYNVTKFFYATSQIHVPEA 115
E++Q ++ FN ++A+ + G + P N+T A ++ +A
Sbjct: 1 EVSQDLFNQFN-----------LFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADA 49
Query: 116 FIIVPLSREAWSKESNWMGYVA--VATDEGKAVLGRRDIVIAWRGSLQTLEWVNDLEFNF 173
+ +S E + +G V +A D + IV+++RGS W+ +L F+
Sbjct: 50 TFL-------YSFEDSGVGDVTGFLALDNTNKL-----IVLSFRGSRSIENWIGNLNFDL 97
Query: 174 VSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFNKTSARDQVIHEIRRLVDQYKNEEIS 233
I G R D W S+ + R +V +R ++ +
Sbjct: 98 KEINDICSGCRGHD-GFTSSWRSV-----------ADTLRQKVEDAVR------EHPDYR 139
Query: 234 ITVTGHSLGAALATLNAVDIAANGFNKPGGQPNKACPVTAIIFASPRVGDSTFKKVLSGY 293
+ TGHSLG ALAT+ D+ NG++ + + +PRVG+ F + L+
Sbjct: 140 VVFTGHSLGGALATVAGADLRGNGYD-----------IDVFSYGAPRVGNRAFAEFLTVQ 188
Query: 294 QDLRVLRIRNELDVVPKYP 312
+ RI + D+VP+ P
Sbjct: 189 TGGTLYRITHTNDIVPRLP 207
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 106/259 (40%), Gaps = 54/259 (20%)
Query: 56 EIAQAAYDTFNTEKASKYAGDSIYAKKDFFSKVGLDKGNPYKYNVTKFFYATSQIHVPEA 115
E++Q ++ FN ++A+ + G + P N+T A ++ +A
Sbjct: 1 EVSQDLFNQFN-----------LFAQYSAAAYCGKNNDAPAGTNITCTGNACPEVEKADA 49
Query: 116 FIIVPLSREAWSKESNWMGYVA--VATDEGKAVLGRRDIVIAWRGSLQTLEWVNDLEFNF 173
+ +S E + +G V +A D + IV+++RGS W+ +L F+
Sbjct: 50 TFL-------YSFEDSGVGDVTGFLALDNTNKL-----IVLSFRGSRSIENWIGNLNFDL 97
Query: 174 VSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFNKTSARDQVIHEIRRLVDQYKNEEIS 233
I G R D W S+ + R +V +R ++ +
Sbjct: 98 KEINDICSGCRGHD-GFTSSWRSV-----------ADTLRQKVEDAVR------EHPDYR 139
Query: 234 ITVTGHSLGAALATLNAVDIAANGFNKPGGQPNKACPVTAIIFASPRVGDSTFKKVLSGY 293
+ TGH+LG ALAT+ D+ NG++ + + +PRVG+ F + L+
Sbjct: 140 VVFTGHALGGALATVAGADLRGNGYD-----------IDVFSYGAPRVGNRAFAEFLTVQ 188
Query: 294 QDLRVLRIRNELDVVPKYP 312
+ RI + D+VP+ P
Sbjct: 189 TGGTLYRITHTNDIVPRLP 207
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 77/187 (41%), Gaps = 50/187 (26%)
Query: 149 RRDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFN 208
+ I I +RGS W+ DL F VS + G KVH+G+ Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGT------KVHKGFLDSY---------- 115
Query: 209 KTSARDQVIHE-IRRLVDQYKN-EEISITVTGHSLGAALATLNAVDI--------AANGF 258
+V +E + ++DQ+K + VTGHSLG A L A+D+ ++N F
Sbjct: 116 -----GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATVLLCALDLYQREEGLSSSNLF 170
Query: 259 NKPGGQPNKACPVTAIIFASPRVGDSTFKK-VLSGYQDLRVLRIRNELDVVPKYP--LIG 315
GQ PRVGD F V+S R R NE D+VP P G
Sbjct: 171 LYTQGQ--------------PRVGDPAFANYVVSTGIPYR--RTVNERDIVPHLPPAAFG 214
Query: 316 YEDVGKE 322
+ G+E
Sbjct: 215 FLHAGEE 221
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 77/187 (41%), Gaps = 50/187 (26%)
Query: 149 RRDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFN 208
+ I I +RGS W+ DL F VS + G KVH+G+ Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGT------KVHKGFLDSY---------- 115
Query: 209 KTSARDQVIHE-IRRLVDQYKN-EEISITVTGHSLGAALATLNAVDI--------AANGF 258
+V +E + ++DQ+K + VTGHSLG A A L A+D+ ++N F
Sbjct: 116 -----GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLF 170
Query: 259 NKPGGQPNKACPVTAIIFASPRVGDSTFKK-VLSGYQDLRVLRIRNELDVVPKYP--LIG 315
GQ PRVG+ F V+S R R NE D+VP P G
Sbjct: 171 LYTQGQ--------------PRVGNPAFANYVVSTGIPYR--RTVNERDIVPHLPPAAFG 214
Query: 316 YEDVGKE 322
+ G E
Sbjct: 215 FLHAGSE 221
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 77/187 (41%), Gaps = 50/187 (26%)
Query: 149 RRDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFN 208
+ I I +RGS W+ DL F VS + G KVH+G+ Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGT------KVHKGFLDSY---------- 115
Query: 209 KTSARDQVIHE-IRRLVDQYKN-EEISITVTGHSLGAALATLNAVDI--------AANGF 258
+V +E + ++DQ+K + VTGHSLG A A L A+D+ ++N F
Sbjct: 116 -----GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLF 170
Query: 259 NKPGGQPNKACPVTAIIFASPRVGDSTFKK-VLSGYQDLRVLRIRNELDVVPKYP--LIG 315
GQ PRVG+ F V+S R R NE D+VP P G
Sbjct: 171 LYTQGQ--------------PRVGNPAFANYVVSTGIPYR--RTVNERDIVPHLPPAAFG 214
Query: 316 YEDVGKE 322
+ G E
Sbjct: 215 FLHAGSE 221
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 77/187 (41%), Gaps = 50/187 (26%)
Query: 149 RRDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFN 208
+ I I +RGS W+ DL F VS + G KVH+G+ Y
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGT------KVHKGFLDSY---------- 115
Query: 209 KTSARDQVIHE-IRRLVDQYKN-EEISITVTGHSLGAALATLNAVDI--------AANGF 258
+V +E + ++DQ+K + VTGHSLG A A L A+D+ ++N F
Sbjct: 116 -----GEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLF 170
Query: 259 NKPGGQPNKACPVTAIIFASPRVGDSTFKK-VLSGYQDLRVLRIRNELDVVPKYP--LIG 315
GQ PRVG+ F V+S R R NE D+VP P G
Sbjct: 171 LYTQGQ--------------PRVGNPAFANYVVSTGIPYR--RTVNERDIVPHLPPAAFG 214
Query: 316 YEDVGKE 322
+ G E
Sbjct: 215 FLHAGSE 221
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 44/197 (22%)
Query: 150 RDIVIAWRGSLQTLEWVNDLEF------NFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQ 203
+ I + RG+ + + D+ NF A I DD VH G+ Y +
Sbjct: 79 KQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCLVHNGFIQSYNN--- 135
Query: 204 RSPFNKTSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVDIAANGFNKPGG 263
+Q+ ++ +++QY + +I+ VTGHSLG A A L +++ NG +
Sbjct: 136 --------TYNQIGPKLDSVIEQYPDYQIA--VTGHSLGGAAALLFGINLKVNGHDP--- 182
Query: 264 QPNKACPVTAIIFASPRVGDSTFK----KVLSGYQ---------DLRVLRIRNELDVVPK 310
+ P VG++ F K+ G + D ++ RI + D+VP+
Sbjct: 183 --------LVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQ 234
Query: 311 YPL-IGYEDVGKELTID 326
P GY+ E+ ID
Sbjct: 235 VPFWDGYQHCSGEVFID 251
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 33/176 (18%)
Query: 149 RRDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFN 208
R++IV+++RGS+ W+ +L+F+ T VH G+ ++ +N
Sbjct: 72 RKEIVVSFRGSINIRNWLTNLDFDQDDCS------LTSGCGVHSGF---------QNAWN 116
Query: 209 KTSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVDIAANGFNKPGGQPNKA 268
+ SA + N + GHSLG A+ATL ++ G
Sbjct: 117 EISAAATA----AVAKARKANPSFKVVSVGHSLGGAVATLAGANLRIGGT---------- 162
Query: 269 CPVTAIIFASPRVGDSTFKKVLSGYQDLRVLRIRNELDVVPKYP--LIGYEDVGKE 322
P+ + SPRVG++ +S Q R+ N D VP+ P + GY E
Sbjct: 163 -PLDIYTYGSPRVGNTQLAAFVSN-QAGGEFRVTNAKDPVPRLPPLIFGYRHTSPE 216
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 35/181 (19%)
Query: 150 RDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFNK 209
++I+ +RG+ D + + + + +D +VH G+Y
Sbjct: 59 KEIITVFRGTGSDTNLQLDTNYTLTPFDTL---PQCNDCEVHGGYY-----------IGW 104
Query: 210 TSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVDIAANGFNKPGGQPNKAC 269
S +DQV +++ QY + ++TVTGHSLGA++A L A ++A N
Sbjct: 105 ISVQDQVESLVKQQASQYP--DYALTVTGHSLGASMAALTAAQLSATYDN---------- 152
Query: 270 PVTAIIFASPRVGDSTFKKVL------SGYQDLRVLRIRNELDVVPKYPLI--GYEDVGK 321
V F PR G+ F + S + + R+ + D +P P GY G
Sbjct: 153 -VRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPAEQGYAHGGV 211
Query: 322 E 322
E
Sbjct: 212 E 212
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 35/181 (19%)
Query: 150 RDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFNK 209
++I+ +RG+ D + + + + +D +VH G+Y
Sbjct: 59 KEIITVFRGTGSDTNLQLDTNYTLTPFDTL---PQCNDCEVHGGYY-----------IGW 104
Query: 210 TSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVDIAANGFNKPGGQPNKAC 269
S +DQV +++ QY + ++TVTGHSLGA++A L A ++A N
Sbjct: 105 ISVQDQVESLVKQQASQYP--DYALTVTGHSLGASMAALTAAQLSATYDN---------- 152
Query: 270 PVTAIIFASPRVGDSTFKKVL------SGYQDLRVLRIRNELDVVPKYPLI--GYEDVGK 321
V F PR G+ F + S + + R+ + D +P P GY G
Sbjct: 153 -VRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPADEGYAHGGV 211
Query: 322 E 322
E
Sbjct: 212 E 212
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 35/181 (19%)
Query: 150 RDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFNK 209
++I+ +RG+ D + + + + +D +VH G+Y
Sbjct: 59 KEIITVFRGTGSDTNLQLDTNYTLTPFDTL---PQCNDCEVHGGYY-----------IGW 104
Query: 210 TSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVDIAANGFNKPGGQPNKAC 269
S +DQV +++ QY + ++TVTGHSLGA++A L A ++A N
Sbjct: 105 ISVQDQVESLVKQQASQYP--DYALTVTGHSLGASMAALTAAQLSATYDN---------- 152
Query: 270 PVTAIIFASPRVGDSTFKKVL------SGYQDLRVLRIRNELDVVPKYPLI--GYEDVGK 321
V F PR G+ F + S + + R+ + D +P P GY G
Sbjct: 153 -VRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPAEQGYAHGGV 211
Query: 322 E 322
E
Sbjct: 212 E 212
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 35/181 (19%)
Query: 150 RDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFNK 209
++I+ +RG+ D + + + + +D +VH G+Y
Sbjct: 59 KEIITVFRGTGSDTNLQLDTNYTLTPFDTL---PQCNDCEVHGGYY-----------IGW 104
Query: 210 TSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVDIAANGFNKPGGQPNKAC 269
S +DQV +++ QY + ++TVTGH+LGA++A L A ++A N
Sbjct: 105 ISVQDQVESLVKQQASQYP--DYALTVTGHALGASMAALTAAQLSATYDN---------- 152
Query: 270 PVTAIIFASPRVGDSTFKKVL------SGYQDLRVLRIRNELDVVPKYPLI--GYEDVGK 321
V F PR G+ F + S + + R+ + D +P P GY G
Sbjct: 153 -VRLYTFGEPRSGNQAFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLPPADEGYAHGGV 211
Query: 322 E 322
E
Sbjct: 212 E 212
>pdb|3G7N|A Chain A, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
pdb|3G7N|B Chain B, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
Length = 258
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 149 RRDIVIAWRGSLQTLEWVNDLEFNFVSAE---KIFGGDRTDDPKVHQGWYSIYTSDDQRS 205
++ I + RGS ++VND++ ++ E F D VH+ W +++
Sbjct: 55 KKTIAVIMRGSTTITDFVNDIDIALITPELSGVTFPSDVKIMRGVHRPWSAVH------- 107
Query: 206 PFNKTSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVDIAANGFNKPGGQP 265
D +I E++ L+ +Y + ++ GHSLG AL ++ V +A N P
Sbjct: 108 --------DTIITEVKALIAKY--PDYTLEAVGHSLGGALTSIAHVALAQN-------FP 150
Query: 266 NKACPVTAIIFASPRVGDSTFKKVLSGYQDLRVLRIRNELDVVPKY---PLIGYEDVGKE 322
+K+ V+ + A P +G+ + + Q R N LD VP PL+ ++ G E
Sbjct: 151 DKSL-VSNALNAFP-IGNQAWADFGTA-QAGTFNRGNNVLDGVPNMYSSPLVNFKHYGTE 207
Query: 323 LTIDTTNSKYLK 334
T + +K
Sbjct: 208 YYSSGTEASTVK 219
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 30/166 (18%)
Query: 149 RRDIVIAWRGSLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFN 208
++ I + +RG+ + D+ FNF + + G KVH G+ S Y
Sbjct: 73 QKTIYLVFRGTNSFRSAITDIVFNFSDYKPVKGA------KVHAGFLSSY---------- 116
Query: 209 KTSARDQVIHEIRRLVDQ--YKNEEISITVTGHSLGAALATLNAVDIAANGFNKPGGQPN 266
+QV+++ +V + + + VTGHSLG A A L +D+ +P P
Sbjct: 117 -----EQVVNDYFPVVQEQLTAHPTYKVIVTGHSLGGAQALLAGMDLYQ---REPRLSPK 168
Query: 267 KACPVTAIIFASPRVGDSTFKKVLSGYQDLRVLRIRNELDVVPKYP 312
++ PRVG+ TF + + R ++ D+VP P
Sbjct: 169 N---LSIFTVGGPRVGNPTFAYYVES-TGIPFQRTVHKRDIVPHVP 210
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 222 RLVDQYKNEEIS------ITVTGHSLGAALATLNAV---DIAANGFNKPGGQPNKACPVT 272
+ + Q+ NE+I I VTGHS G AL++ A+ DI G + ++ ++
Sbjct: 150 KTILQFLNEKIGPEGKAKICVTGHSKGGALSSTLALWLKDIQ-------GVKLSQNIDIS 202
Query: 273 AIIFASPRVGDSTFKKVLSGYQDLRVLRIRNELDVVP 309
I FA P G++ F + RI N LD+VP
Sbjct: 203 TIPFAGPTAGNADFADYFDDCLGDQCTRIANSLDIVP 239
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 191 HQGWYSIYTSDDQRSPFNKTSARDQVIHEIRRLVDQYKNEEISITVTGHSLGA 243
+ W +++T D+ +PFN VI IR+L+D+Y +E I +TG S+G
Sbjct: 224 NSSWSTLFT--DRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGG 274
>pdb|3UUF|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 278
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 234 ITVTGHSLGAALATLNAVDIAANGFNKPGGQPNKACPVTAIIFASPRVGDSTFKKVLSGY 293
+TV GHSLGAA+ L A+DI GG +F PR+G+ TF +
Sbjct: 139 VTVIGHSLGAAMGLLCAMDIE---LRMDGGL------YKTYLFGLPRLGNPTFASFVDQK 189
Query: 294 QDLRVLRIRNELDVVPKYP--LIGYEDVGKELTIDTTNSKYLK 334
+ I N D VP P +GY+ + I NS K
Sbjct: 190 IGDKFHSIINGRDWVPTVPPRALGYQHPSDYVWIYPGNSTSAK 232
>pdb|3UUE|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 279
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 234 ITVTGHSLGAALATLNAVDIAANGFNKPGGQPNKACPVTAIIFASPRVGDSTFKKVLSGY 293
+TV GHSLGAA+ L A+DI GG +F PR+G+ TF +
Sbjct: 140 VTVIGHSLGAAMGLLCAMDIE---LRMDGGL------YKTYLFGLPRLGNPTFASFVDQK 190
Query: 294 QDLRVLRIRNELDVVPKYP--LIGYEDVGKELTIDTTNSKYLK 334
+ I N D VP P +GY+ + I NS K
Sbjct: 191 IGDKFHSIINGRDWVPTVPPRALGYQHPSDYVWIYPGNSTSAK 233
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 193 GWYSIYTSDDQRSPFNKTSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVD 252
GW + SD+Q +P+ K + Q+I + +L + + GH+ GA ++ A+D
Sbjct: 71 GWSDMPESDEQHTPYTKRAMAKQLIEAMEQL------GHVHFALAGHNRGARVSYRLALD 124
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 193 GWYSIYTSDDQRSPFNKTSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVD 252
GW + SD+Q +P+ K + Q+I + +L + + GH GA ++ A+D
Sbjct: 71 GWSDMPESDEQHTPYTKRAMAKQLIEAMEQL------GHVHFALAGHXRGARVSYRLALD 124
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 193 GWYSIYTSDDQRSPFNKTSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVD 252
GW + SD+Q +P+ K + Q+I + +L + + GH GA ++ A+D
Sbjct: 71 GWSDMPESDEQHTPYTKRAMAKQLIEAMEQL------GHVHFALAGHDRGARVSYRLALD 124
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 193 GWYSIYTSDDQRSPFNKTSARDQVIHEIRRLVDQYKNEEISITVTGHSLGAALATLNAVD 252
GW + SD+Q +P+ K + Q+I + +L + + GH GA ++ A+D
Sbjct: 71 GWSDMPESDEQHTPYTKRAMAKQLIEAMEQL------GHVHFALAGHDRGARVSYRLALD 124
>pdb|2A8L|A Chain A, Crystal Structure Of Human Taspase1 (T234a Mutant)
pdb|2A8L|B Chain B, Crystal Structure Of Human Taspase1 (T234a Mutant)
Length = 420
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 1 MDKKFFFSCFGKNKKKMEMADSI------AKKWRSLSGQNNWEGLLDPLDIDLRRYMIHY 54
M +F + F +NK+K+E+A+ + KK R S + N G LD + + + H
Sbjct: 187 MTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLDAVGAVV---VDHE 243
Query: 55 GEIAQA 60
G +A A
Sbjct: 244 GNVAAA 249
>pdb|2A8M|A Chain A, Crystal Structure Of Human Taspase1 (T234s Mutant)
pdb|2A8M|B Chain B, Crystal Structure Of Human Taspase1 (T234s Mutant)
Length = 420
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 1 MDKKFFFSCFGKNKKKMEMADSI------AKKWRSLSGQNNWEGLLDPLDIDLRRYMIHY 54
M +F + F +NK+K+E+A+ + KK R S + N G LD + + + H
Sbjct: 187 MTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLDSVGAVV---VDHE 243
Query: 55 GEIAQA 60
G +A A
Sbjct: 244 GNVAAA 249
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 197 IYTSDDQRSPFNKTSARDQVIHEIR----RLVDQYKNEEISITVTGHSLGAALATLNAVD 252
I +D+ PFN + V H I + D + +++ GH LG+A+A L+ D
Sbjct: 283 IAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGD 342
Query: 253 IAANGFNKPGGQPNKACPVTAIIFASPRVGDSTFKKVLSGYQDLRVLRIRNELDVV 308
N + ++ + A PR+ + G++D++ R R E ++V
Sbjct: 343 GQHNMVYTGDFKYEQSRLLEAAANRFPRIETLVMESTYGGHEDVQPSRNRAEKELV 398
>pdb|2A8J|A Chain A, Crystal Structure Of Human Taspase1 (Acivated Form)
pdb|2A8J|B Chain B, Crystal Structure Of Human Taspase1 (Acivated Form)
Length = 420
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 1 MDKKFFFSCFGKNKKKMEMADSI------AKKWRSLSGQNNWEGLLDPLDIDLRRYMIHY 54
M +F + F +NK+K+E+A+ + KK R S + N G LD + + + H
Sbjct: 187 MTTRFSLAAFKRNKRKLELAERVDTDFMQLKKRRQSSEKENDSGTLDTVGAVV---VDHE 243
Query: 55 GEIAQA 60
G +A A
Sbjct: 244 GNVAAA 249
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 26 KWRSLSGQNNWEGLLDPLDIDLRRYMIHYGEIAQAAYDTFNTEKASKYAGDSIYAKKDFF 85
++ +L G+N LD + R + GE Q AY+ NT++A S+ +K F
Sbjct: 1197 RYCTLQGRNEVPDTLDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRK--F 1254
Query: 86 SKVGLDKGN 94
GL G+
Sbjct: 1255 GMFGLQPGH 1263
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 26 KWRSLSGQNNWEGLLDPLDIDLRRYMIHYGEIAQAAYDTFNTEKASKYAGDSIYAKKDFF 85
++ +L G+N LD + R + GE Q AY+ NT++A S+ +K F
Sbjct: 1197 RYCTLQGRNEVPDTLDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRK--F 1254
Query: 86 SKVGLDKGN 94
GL G+
Sbjct: 1255 GMFGLQPGH 1263
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 322 ELTIDTTNSKYLKNGAANFSGWHNLEVYLHGVAG-TQGRKGGFQLEVNRDISLVNKTMDS 380
E I T+NS NG NF +L +L VA T RK Q+++ S ++++
Sbjct: 186 ERGILTSNSA--GNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINT 243
Query: 381 LKDQYLVPVSWRILKNKGM 399
+QY VS R + N G
Sbjct: 244 FDNQYYPLVSGRDIPNTGF 262
>pdb|2A8I|A Chain A, Crystal Structure Of Human Taspase1
pdb|2A8I|B Chain B, Crystal Structure Of Human Taspase1
Length = 420
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 4 KFFFSCFGKNKKKMEMADSI------AKKWRSLSGQNNWEGLLDPLDIDLRRYMIHYGEI 57
+F + F +NK+K+E+A+ + KK R S + N G LD + + + H G +
Sbjct: 190 RFSLAAFKRNKRKLELAERVDTDFXQLKKRRQSSEKENDSGTLDTVGAVV---VDHEGNV 246
Query: 58 AQA 60
A A
Sbjct: 247 AAA 249
>pdb|3MII|A Chain A, Crystal Structure Of Y0r391cpHSP33 FROM SACCHAROMYCES
CEREVISIAE
pdb|3MII|B Chain B, Crystal Structure Of Y0r391cpHSP33 FROM SACCHAROMYCES
CEREVISIAE
Length = 245
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 71/192 (36%), Gaps = 28/192 (14%)
Query: 159 SLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFNKTSARDQVIH 218
S T E + E +FVS FG D PK G + + S FNK AR + +
Sbjct: 42 SFDTFEK-HGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTAN 100
Query: 219 EIRRLVDQYKNEEISITVTGH-SLGAALATLNAVDIAANGFNKPGGQPNKACPVTAIIFA 277
E+ YK + GH +L N DIA+ + G V A I
Sbjct: 101 EVN--ASDYK---VFFASAGHGALFDYPKAKNLQDIASKIYANGG--------VIAAIXH 147
Query: 278 SPRVGDSTFKKVLSGYQDLRVLRIRNELDVVPKYPL-----IGYEDVGKELTIDTTNSKY 332
P + D G D++ R E + +PL +G +D+ + + T
Sbjct: 148 GPLLFD--------GLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVA 199
Query: 333 LKNGAANFSGWH 344
KNGA + H
Sbjct: 200 NKNGAKYLAPIH 211
>pdb|3KKL|A Chain A, Crystal Structure Of Functionally Unknown Hsp33 From
Saccharomyces Cerevisiae
pdb|3KKL|B Chain B, Crystal Structure Of Functionally Unknown Hsp33 From
Saccharomyces Cerevisiae
Length = 244
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 71/192 (36%), Gaps = 28/192 (14%)
Query: 159 SLQTLEWVNDLEFNFVSAEKIFGGDRTDDPKVHQGWYSIYTSDDQRSPFNKTSARDQVIH 218
S T E + E +FVS FG D PK G + + S FNK AR + +
Sbjct: 34 SFDTFEK-HGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTAN 92
Query: 219 EIRRLVDQYKNEEISITVTGH-SLGAALATLNAVDIAANGFNKPGGQPNKACPVTAIIFA 277
E+ YK + GH +L N DIA+ + G V A I
Sbjct: 93 EVN--ASDYK---VFFASAGHGALFDYPKAKNLQDIASKIYANGG--------VIAAICH 139
Query: 278 SPRVGDSTFKKVLSGYQDLRVLRIRNELDVVPKYPL-----IGYEDVGKELTIDTTNSKY 332
P + D G D++ R E + +PL +G +D+ + + T
Sbjct: 140 GPLLFD--------GLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVA 191
Query: 333 LKNGAANFSGWH 344
KNGA + H
Sbjct: 192 NKNGAKYLAPIH 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,737,219
Number of Sequences: 62578
Number of extensions: 606928
Number of successful extensions: 1522
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1491
Number of HSP's gapped (non-prelim): 40
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)