BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014664
(420 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DC64|MET16_DANRE Methyltransferase-like protein 16 OS=Danio rerio GN=mettl16 PE=2
SV=1
Length = 471
Score = 234 bits (598), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 134/352 (38%), Positives = 189/352 (53%), Gaps = 76/352 (21%)
Query: 15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
++HP+N+Y + PPDF LAS YP F+ V + GR +++ D A R LT LL D G
Sbjct: 6 SMHPRNRYKDKPPDFVYLASKYPEFQKHVQTTLTGRVTLNFKDPEAVRALTCTLLKEDFG 65
Query: 75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
L IP +L PTVP R NYIHW+EDL+ G+ +G DIGTGA+CIYPLLG
Sbjct: 66 LTIEIPLERLIPTVPLRLNYIHWVEDLIGG--------QGNPQRGIDIGTGASCIYPLLG 117
Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
A++ GW F+ +++ D+ +A+KNV+ N H++ELI++ KV Q++L ++++
Sbjct: 118 ATMNGWFFLATEVDDICFNYAKKNVEQN-HLAELIKVVKVP--------QKTLLMDALKE 168
Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
ES + +DFC+CNPPFF +
Sbjct: 169 ESIV-------------------------------------------YDFCMCNPPFFAN 185
Query: 255 MEEA-GLNPKTSCGGTPE--------EMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG 305
EA G+N + S P E++ GGE F+ R+I DS+ LK+ RWY+ M+G
Sbjct: 186 QLEAKGVNSRNSRRPPPSSINTGGVTEIMAEGGELEFVKRVIHDSLQLKKRLRWYSCMLG 245
Query: 306 RKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV-------PPARK 350
+K +L L +LRK GV V TEF QG+T RW LAWSF PP +K
Sbjct: 246 KKCSLAPLKDELRKQGVAKVTHTEFCQGRTMRWALAWSFYDDVPVPSPPCKK 297
>sp|Q554C9|MET16_DICDI Methyltransferase-like protein 16 homolog OS=Dictyostelium
discoideum GN=DDB_G0275203 PE=3 SV=1
Length = 568
Score = 232 bits (592), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 199/358 (55%), Gaps = 43/358 (12%)
Query: 3 SKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATR 62
+KK+R+R + ++H N Y NPP+F LLAS YP+F+ ++ + IDW D NAT+
Sbjct: 31 TKKKRKRSND--SMHINNFYRYNPPNFKLLASKYPTFDKYIINKTEKIYNIDWKDSNATK 88
Query: 63 ELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSS-NIIPTTSRNGDKV-KGF 120
ELTRVLL HD GL +PD LCPT+ R NY++WI D L + II + N +K+ KG
Sbjct: 89 ELTRVLLDHDFGLRIELPDNYLCPTLTLRINYLYWISDQLKNLKIILNDNDNDNKIIKGI 148
Query: 121 DIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSES 179
DIGTG +CI+PLLGA L WSF+G D+ D LE+A+ N+ N
Sbjct: 149 DIGTGTSCIFPLLGAKLFNNWSFIGIDIDDKVLEYAQNNITIN----------------- 191
Query: 180 TPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDG 239
S+ +T ++E N D+ + E S++FN SS D
Sbjct: 192 --SLNSKIT--LFKNEKNSDILLKLLNYKE--GSNTFN------SSNDDHQDNHDDDDDD 239
Query: 240 EQF--DFCICNPPFFESMEEAGLNPKTS----CGGTPEEMVCSGGERAFITRIIEDSVAL 293
E++ DFC+CNPPFF+ + E N + C G+ EMV GGE F+ RII++S L
Sbjct: 240 EEYFADFCLCNPPFFKDLNENNNNKNNNPKSNCTGSVNEMVTDGGEFEFVKRIIKESFQL 299
Query: 294 KQTFRWYTSMVGRKSNLKFLISKLRK---VGVTIVKTTEFVQGQTCRWGLAWSFVPPA 348
K R+YT+M+GRK NL LI+ L K + ++TTE VQG T RW L+W F+ +
Sbjct: 300 KCKIRFYTTMIGRKVNLNPLINILIKQYYLPKNQIQTTELVQGNTSRWVLSWYFLNKS 357
>sp|Q6GR37|MET16_XENLA Methyltransferase-like protein 16 OS=Xenopus laevis GN=mettl16 PE=2
SV=1
Length = 547
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/360 (38%), Positives = 197/360 (54%), Gaps = 73/360 (20%)
Query: 15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
++HP+N+Y + PPDFA LAS YP F+ V + GR +++ D A R LT LL D G
Sbjct: 6 SMHPRNRYKDKPPDFAYLASKYPEFKQHVNVNLAGRVSLNFKDPCAVRALTCTLLKEDFG 65
Query: 75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKV---KGFDIGTGANCIYP 131
L IP +L PTVP R NYIHW+EDL++ + + DK +G DIGTGA+CIYP
Sbjct: 66 LTIDIPLERLIPTVPLRLNYIHWVEDLINYH-------DSDKTALRRGIDIGTGASCIYP 118
Query: 132 LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKS 191
LLGA+L GW F+ +++ D+ +A+KNV+ N ++S+LI++ KV Q++L +
Sbjct: 119 LLGATLNGWYFLATEVDDICYNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDA 169
Query: 192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251
+++ES + +DFC+CNPPF
Sbjct: 170 LKEESEI------------------------------------------IYDFCMCNPPF 187
Query: 252 FESMEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302
F + EA G+N P + G E++ GGE F+ RII DS+ LK+ RWY+
Sbjct: 188 FANQLEAQGVNSRNPHRSPPSSVNTGGITEIMAEGGELEFVKRIIHDSLKLKKRLRWYSC 247
Query: 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNL 362
M+G+K +L L +LR GV V TEF QG+T RW LAWSF ++I P+ +K+ L
Sbjct: 248 MLGKKCSLAPLKEELRLQGVPKVAHTEFYQGRTMRWALAWSFY---EEVIIPNPPKKRKL 304
>sp|Q9CQG2|MET16_MOUSE Methyltransferase-like protein 16 OS=Mus musculus GN=Mettl16 PE=1
SV=1
Length = 553
Score = 229 bits (583), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 205/379 (54%), Gaps = 78/379 (20%)
Query: 15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
++H +N+Y + PPDFA LAS YP F+ + + +GR +++ D A R LT LL D G
Sbjct: 6 SMHARNRYKDKPPDFAYLASKYPDFKQHIQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65
Query: 75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
L+ IP +L PTVP R NYIHW+EDL+ T+ +G DIGTGA+CIYPLLG
Sbjct: 66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKTTLR----RGIDIGTGASCIYPLLG 121
Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
A+L GW F+ +++ D+ +A+KNV+ N ++S+LI++ KV Q++L ++++
Sbjct: 122 ATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDALKE 172
Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
ES + +DFC+CNPPFF +
Sbjct: 173 ESEI------------------------------------------VYDFCMCNPPFFAN 190
Query: 255 MEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG 305
EA G+N P + G E++ GGE F+ RII DS+ LK+ RWY+ M+G
Sbjct: 191 QLEAKGVNSRNSRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG 250
Query: 306 RKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV-------PPA--RKIISPHV 356
+K +L L +LR GV V TEF QG+T RW LAWSF PP+ RK+ P
Sbjct: 251 KKCSLAPLKEELRIQGVPKVTFTEFCQGRTMRWALAWSFYDDVTVPSPPSKRRKLEKP-- 308
Query: 357 AEKKNLSF-MLEGVQRQFS 374
+K ++F +LE V ++ S
Sbjct: 309 --RKPITFVVLESVMKELS 325
>sp|Q86W50|MET16_HUMAN Methyltransferase-like protein 16 OS=Homo sapiens GN=METTL16 PE=1
SV=2
Length = 562
Score = 226 bits (577), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 203/379 (53%), Gaps = 78/379 (20%)
Query: 15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
++H +N+Y + PPDFA LAS YP F+ V + +GR +++ D A R LT LL D G
Sbjct: 6 SMHARNRYKDKPPDFAYLASKYPDFKQHVQINLNGRVSLNFKDPEAVRALTCTLLREDFG 65
Query: 75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
L+ IP +L PTVP R NYIHW+EDL+ S +G DIGTGA+CIYPLLG
Sbjct: 66 LSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ----DSDKSTLRRGIDIGTGASCIYPLLG 121
Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
A+L GW F+ +++ D+ +A+KNV+ N ++S+LI++ KV Q++L ++++
Sbjct: 122 ATLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDALKE 172
Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
ES + +DFC+CNPPFF +
Sbjct: 173 ESEI------------------------------------------IYDFCMCNPPFFAN 190
Query: 255 MEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG 305
EA G+N P + G E++ GGE F+ RII DS+ LK+ RWY+ M+G
Sbjct: 191 QLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG 250
Query: 306 RKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV-------PPA--RKIISPHV 356
+K +L L +LR GV V TEF QG+T RW LAWSF PP+ RK+ P
Sbjct: 251 KKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAWSFYDDVTVPSPPSKRRKLEKP-- 308
Query: 357 AEKKNLSF-MLEGVQRQFS 374
+K ++F +L V ++ S
Sbjct: 309 --RKPITFVVLASVMKELS 325
>sp|Q5ZIA0|MET16_CHICK Methyltransferase-like protein 16 OS=Gallus gallus GN=METTL16 PE=2
SV=1
Length = 558
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 189/355 (53%), Gaps = 77/355 (21%)
Query: 15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
++H +N+Y + PPDFA LA YP F V + GR +++ D A R LT LL D G
Sbjct: 6 SMHARNRYKDKPPDFAYLAGKYPEFRQHVQTTLAGRVSLNFKDPEAVRALTCTLLKEDFG 65
Query: 75 LNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDK---VKGFDIGTGANCIYP 131
L IP +L PTVP R NYIHW+EDL+ ++ DK +G DIGTGA+CIYP
Sbjct: 66 LTIDIPLERLIPTVPLRLNYIHWVEDLIG-------HQDADKRVLRRGIDIGTGASCIYP 118
Query: 132 LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKS 191
LLG++L GW F+ +++ D+ +A+KNV+ N ++S+LI++ KV Q++L +
Sbjct: 119 LLGSTLNGWYFLATEVDDMCFNYAKKNVEQN-NLSDLIKVVKVP--------QKTLLMDA 169
Query: 192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251
+++ES + +DFC+CNPPF
Sbjct: 170 LKEESEI------------------------------------------IYDFCMCNPPF 187
Query: 252 FESMEEA-GLN--------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302
F + EA G+N P + G E++ GGE F+ RII DS+ LK+ RWY+
Sbjct: 188 FANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSC 247
Query: 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV-------PPARK 350
M+G+K +L L +L+ GV V TEF QG+T RW LAWSF PP+++
Sbjct: 248 MLGKKCSLAPLKEELKIQGVPKVTHTEFCQGRTMRWALAWSFYDDVQVPSPPSKR 302
>sp|A6W2M9|RLMF_MARMS Ribosomal RNA large subunit methyltransferase F OS=Marinomonas sp.
(strain MWYL1) GN=rlmF PE=3 SV=1
Length = 327
Score = 187 bits (475), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 175/364 (48%), Gaps = 73/364 (20%)
Query: 1 MGSKKRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNA 60
+ SK + +R + +HP+N + DFALLA P F+ ++ G +D+ + NA
Sbjct: 3 LKSKNTKSKRTNKLELHPRNPHRARY-DFALLADSCPELSGFIQLNQYGNESVDFANPNA 61
Query: 61 TRELTRVLLLHDHGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKG 119
+ L R LL H +G+ +W IP G LCP +P R++YIH++ DLL+++ + R G VK
Sbjct: 62 VKTLNRALLNHFYGVAFWDIPPGYLCPPIPGRADYIHYLADLLAASNLGVIPR-GKGVKV 120
Query: 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSES 179
D+G GANC+YP++G GW FVGSD+ VA+ + VKSNP + I R
Sbjct: 121 LDVGVGANCVYPIIGHQEYGWQFVGSDVNPVAVATCDTIVKSNPCLKGAISAR------- 173
Query: 180 TPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDG 239
+ S+ F+ GV ++
Sbjct: 174 ----------------------------LQTQSAKLFD----------------GVWKEK 189
Query: 240 EQFDFCICNPPFFESMEEAGLN------------------PKTSCGGTPEEMVCSGGERA 281
++FD +CNPPF S E A ++ P + GGT E+ C GGE
Sbjct: 190 DRFDLTLCNPPFHTS-ESAMIDESQRKWRGVKGKKTTTQKPVLNFGGTAAELWCDGGEAG 248
Query: 282 FITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA 341
F++R++++SV W+TS+V R+ NL + L+ VG VKT E QGQ +A
Sbjct: 249 FVSRMVKESVQYADRCFWFTSLVARQGNLDAIYRTLKDVGARQVKTIEMAQGQKISRFVA 308
Query: 342 WSFV 345
WSF+
Sbjct: 309 WSFL 312
>sp|Q4ZXI1|RLMF_PSEU2 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
syringae pv. syringae (strain B728a) GN=rlmF PE=3 SV=1
Length = 328
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 115/360 (31%), Positives = 171/360 (47%), Gaps = 78/360 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
E+ T+HP+N++ + DFA L P FV + G+ ID+ + A R R LL
Sbjct: 23 EKATLHPRNRH-QGQYDFAKLIKSSPELAAFVILNPYGKESIDFANPQAVRVFNRALLKA 81
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLSSN---IIPTTSRNGDKVKGFDIGTGAN 127
+G+ +W IP LCP +P R++Y+H++ DLL+ + +IP G +K DIGTGAN
Sbjct: 82 FYGIAHWDIPADYLCPPIPGRADYLHFLADLLAEDNEGVIP----RGASIKALDIGTGAN 137
Query: 128 CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESL 187
CIYPLLG S GW FVGSD+ A+ A VK+N +S+ I +R+ N
Sbjct: 138 CIYPLLGHSDYGWQFVGSDIDSTAIAAATTIVKAN-GLSKAISVRQQANRRQ-------- 188
Query: 188 TGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247
+L+G++ E+F +C
Sbjct: 189 -------------------------------------------ILLGLLDSSERFHVSLC 205
Query: 248 NPPFFESMEEAGLN-----------------PKTSCGGTPEEMVCSGGERAFITRIIEDS 290
NPPF S+EEA P + GG +E+ C GGE FIT++I++S
Sbjct: 206 NPPFHASLEEAQRGSQRKWRALGKADPKRKLPVLNFGGQSQELWCDGGEIGFITQLIQES 265
Query: 291 VALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350
L W++++V + SNL + S L+K G VK E QGQ +AW+F+ A++
Sbjct: 266 ALLPSQVAWFSTLVSKASNLPPIHSALKKAGALEVKVVEMGQGQKQSRFVAWTFLDKAQR 325
>sp|Q61J97|MET16_CAEBR Methyltransferase-like protein 16 homolog OS=Caenorhabditis
briggsae GN=CBG09879 PE=3 SV=1
Length = 481
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 168/353 (47%), Gaps = 78/353 (22%)
Query: 16 IHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGL 75
+HP+N Y + PPDF LA YP F F Y +G+ +D+ A R LT+ LL D L
Sbjct: 7 MHPRNPYRDKPPDFKALAIEYPEFRKFCQYVSNGKVTLDFRKDAAVRCLTQTLLKKDFSL 66
Query: 76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGA 135
N +P G L P VP + NY I+D+L +N I + V G DIGTG +CI+ L+GA
Sbjct: 67 NVNLPAGHLVPRVPQKLNYCLLIDDILQANSITSN------VVGIDIGTGTSCIHALIGA 120
Query: 136 SLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195
GW FV +D + +++ A +NV N + + I + V+ P+++ L
Sbjct: 121 RHFGWKFVATDGDENSVQVAHENVARN-EMGDSICVVHVN-----PAVKTVL-------- 166
Query: 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES- 254
MD+ M P S +F FC+CNPPFFE
Sbjct: 167 --MDVINSM-----PDS----------------------------EFSFCMCNPPFFEKS 191
Query: 255 ------MEEAGLN---------------PKTSCGGTPEEMVCSGGERAFITRIIEDSVAL 293
EE L+ P + + E+ GGE AF+ RII+DSV L
Sbjct: 192 DKEERFCEEPSLSNETYSNNFDFDMRSAPHSETIASSAELYVEGGEVAFVNRIIDDSVCL 251
Query: 294 KQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTE-FVQGQTCRWGLAWSFV 345
+ ++YT+M+GRKS+LK L+ +L + G + QG+T RW LAW+F
Sbjct: 252 RDRIKFYTTMIGRKSSLKPLLQRLERFGENVKFLVHPLNQGKTKRWMLAWTFA 304
>sp|Q48MF3|RLMF_PSE14 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=rlmF PE=3 SV=2
Length = 328
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 176/365 (48%), Gaps = 80/365 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
E+ T+HP+N++ + DFA L P FV + G+ ID+ D A R R LL
Sbjct: 23 EKATLHPRNRH-QGHYDFAKLIKSSPELAAFVILNPYGKESIDFADPQAVRVFNRALLKA 81
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLSSN---IIPTTSRNGDKVKGFDIGTGAN 127
+G+ +W IP LCP +P R++Y+H++ DLL+ + +IP G +K DIGTGAN
Sbjct: 82 FYGIAHWDIPADYLCPPIPGRADYLHFLADLLAEDNEGVIP----RGASIKALDIGTGAN 137
Query: 128 CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESL 187
CIYPLLG S GW FVGSD+ A+ A +K+N +S+ I +R+ DN +
Sbjct: 138 CIYPLLGHSDYGWQFVGSDIDSTAIAAATTIIKAN-GLSKAISVRQQDNRKQ-------- 188
Query: 188 TGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247
+L+G++ E+F +C
Sbjct: 189 -------------------------------------------ILLGLLDSSERFHVSLC 205
Query: 248 NPPFFESMEEAGLN-----------------PKTSCGGTPEEMVCSGGERAFITRIIEDS 290
NPPF S++EA P + GG +E+ C GGE F+TR+I++S
Sbjct: 206 NPPFHASLDEAQRGSQRKWRALGKADPKRKLPVLNFGGQSQELWCEGGEIGFVTRLIQES 265
Query: 291 VALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350
L W++++V + SNL + + L+K G VK E QGQ +AW+F+ A++
Sbjct: 266 ATLPSQVVWFSTLVSKASNLPPIQNALKKAGALEVKVIEMGQGQKQSRFVAWTFLDKAQR 325
Query: 351 IISPH 355
+PH
Sbjct: 326 --TPH 328
>sp|C6D8Y7|RLMF_PECCP Ribosomal RNA large subunit methyltransferase F OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rlmF PE=3
SV=1
Length = 311
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 168/349 (48%), Gaps = 69/349 (19%)
Query: 16 IHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGL 75
+HP+N++ + DF L YP+ PFV + G +D+ + A + L + LL H + +
Sbjct: 11 LHPRNRHRDRY-DFPTLKHSYPALIPFVTVNAYGDESVDFANPEAVKTLNQALLQHFYQI 69
Query: 76 -NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134
+W IPDG LCP +P R++YIH + DLL+ + R + DIG GANCIYPL+G
Sbjct: 70 EHWEIPDGFLCPPIPGRADYIHHLADLLAEDNRAVVPREASVL---DIGCGANCIYPLIG 126
Query: 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194
GW F GS++ +A++ A + +++NP ++ I +R+ +S +
Sbjct: 127 YREYGWRFTGSEINPIAMKAANQTIEANPGLNRAIRLRRQKSSTA--------------- 171
Query: 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFES 254
+L G++ E FD +CNPPF S
Sbjct: 172 ------------------------------------ILAGIIHKNETFDAVMCNPPFHAS 195
Query: 255 MEEA-----------GLNPKT--SCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT 301
E+A GL+ ++ + GG +E+ C GGE AFI ++I++S + W+T
Sbjct: 196 AEDARQGSQRKLHNLGLDKRSPLNFGGQQDELWCEGGESAFIGQMIKESAGFARQCLWFT 255
Query: 302 SMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350
S+V RK NL + L V V+T + QGQ +AWSF+ A +
Sbjct: 256 SLVSRKENLPEIYRALEAVDAEKVRTIDMAQGQKQSRFVAWSFLDTAAR 304
>sp|Q15VI3|RLMF_PSEA6 Ribosomal RNA large subunit methyltransferase F
OS=Pseudoalteromonas atlantica (strain T6c / ATCC
BAA-1087) GN=rlmF PE=3 SV=1
Length = 330
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 165/360 (45%), Gaps = 86/360 (23%)
Query: 15 TIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHG 74
T+HP+N + P AL S YP+ E V ++ G+ ID++ + + L LL+H +G
Sbjct: 25 TMHPRNVHRNGYPMSALCQS-YPTLEAHVIKAKSGQQSIDFSKAASVKALNAALLIHYYG 83
Query: 75 LNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSN---IIPTTSRNGDKVKGFDIGTGANCIY 130
LN W IP+G LCP VP R++YIH + DLL+ + ++PT G++V G DIG GAN IY
Sbjct: 84 LNMWDIPEGYLCPPVPGRADYIHGLADLLAKDNKGVVPT----GNRVIGLDIGVGANAIY 139
Query: 131 PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGK 190
P++G+ GW FVGSD+ DVAL+ A +NP + L+ +RK
Sbjct: 140 PIIGSQTYGWDFVGSDIDDVALKSATTLANNNPKLKPLLAVRK----------------- 182
Query: 191 SVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP 250
Q + +G +++ + F F +CNPP
Sbjct: 183 --QHDKAYIFAG--------------------------------IIQPDDHFTFSLCNPP 208
Query: 251 FFESMEEAGLNP--------------------------KTSCGGTPEEMVCSGGERAFIT 284
F +S EEA + K + G E+ C GGE AFI
Sbjct: 209 FHKSAEEAAMGSLRKVKGLGRNKQKSNNTGNAQPITANKLNFAGQSNELWCDGGELAFIQ 268
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
R+I++SV + W+T +V + +LK + + R G + QGQ +AW F
Sbjct: 269 RMIKESVEYQSQVGWFTCLVSKSLHLKAIETSARYFGAKQFMKVDMGQGQKISRFVAWKF 328
>sp|Q88P77|RLMF_PSEPK Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain KT2440) GN=rlmF PE=3 SV=1
Length = 317
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 166/356 (46%), Gaps = 72/356 (20%)
Query: 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHD 72
+PT+HP+N++ + DF L +P F + G+P ID+ + A R R LL
Sbjct: 5 KPTLHPRNRH-QGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLKAQ 63
Query: 73 HGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYP 131
+G+ W IP LCP +P R++YIH DLL+ + R G +V+ DIG GANCIYP
Sbjct: 64 YGIQHWDIPADYLCPPIPGRADYIHVAADLLADDNAGDVPR-GAQVRALDIGVGANCIYP 122
Query: 132 LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKS 191
LLG S W F+GSD+ VAL A+ V++N + + I +R+ N
Sbjct: 123 LLGYSDYRWRFLGSDIDPVALASAKAIVQAN-GLGKAITLRQQANRAH------------ 169
Query: 192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251
+L G++++GE+FD +CNPPF
Sbjct: 170 ---------------------------------------ILSGLLQEGERFDLTLCNPPF 190
Query: 252 FESMEEAGLN-----------------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALK 294
S +EA P + GG E+ C GGE F+T++I +SV
Sbjct: 191 HASRDEATRGSQRKWKNLGKQDPKRKLPVLNFGGQNNELWCEGGEIRFVTQLIGESVQYA 250
Query: 295 QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350
+ W+TS+V + SNL + + L+K G V+ E QGQ +AWSF+ A +
Sbjct: 251 ERVLWFTSLVSKASNLPGIEAALKKSGAKAVRIIEMGQGQKQSRMVAWSFLDDAAR 306
>sp|Q6D958|RLMF_ERWCT Ribosomal RNA large subunit methyltransferase F OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rlmF PE=3 SV=1
Length = 311
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 173/353 (49%), Gaps = 69/353 (19%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++ +HP+N++ + DF L YP+ PFV + G +D+ + A + L + LL H
Sbjct: 7 QKSGLHPRNRHRDRY-DFPALKQSYPALIPFVKVNAYGDESVDFANPEAVKTLNQALLQH 65
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY 130
+ + +W IPDG LCP +P R++Y+H + DLL+ + R+ + D+G GANC+Y
Sbjct: 66 FYQIEHWTIPDGFLCPPIPGRADYVHHLADLLAEDNRSVVPRDASVL---DVGCGANCVY 122
Query: 131 PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGK 190
PL+G GW F GS++ +A++ A + +++N ++ I +R+ NS++
Sbjct: 123 PLIGHREYGWRFTGSEVNPLAMKAANETIEANSGLNRSIRLRRQKNSKA----------- 171
Query: 191 SVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP 250
+L G++ + FD +CNPP
Sbjct: 172 ----------------------------------------ILAGIIHKNDSFDAVMCNPP 191
Query: 251 FFESMEEA-----------GLNPKT--SCGGTPEEMVCSGGERAFITRIIEDSVALKQTF 297
F S E+A GL+ ++ + GG +E+ C GGE AFI ++I+DSV+ +
Sbjct: 192 FHASAEDAREGSQRKLHNLGLDKRSPLNFGGQQDELWCEGGELAFIGQMIKDSVSFGRQC 251
Query: 298 RWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350
W+TS+V RK +L + L V V+T + QGQ +AWSF+ A +
Sbjct: 252 LWFTSLVSRKEHLPEIYRALEAVDAEKVRTIDMAQGQKQSRFVAWSFLDTAAR 304
>sp|A5VZ65|RLMF_PSEP1 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain F1 / ATCC 700007) GN=rlmF PE=3 SV=1
Length = 317
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 163/350 (46%), Gaps = 72/350 (20%)
Query: 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHD 72
+PT+HP+N++ + DF L +P F + G+P ID+ + A R R LL
Sbjct: 5 KPTLHPRNRH-QGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLKAQ 63
Query: 73 HGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYP 131
+G+ W IP LCP +P R++YIH DLL+ + R G +V+ D+G GANCIYP
Sbjct: 64 YGIQHWDIPADYLCPPIPGRADYIHVAADLLADDNAGDVPR-GTQVRALDVGVGANCIYP 122
Query: 132 LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKS 191
LLG S W F+GSD+ VAL A+ V++N + + I +R+ N
Sbjct: 123 LLGHSDYRWRFLGSDIDPVALASAKAIVQAN-GLGKAITLRQQANRAH------------ 169
Query: 192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251
+L G++++GE+FD +CNPPF
Sbjct: 170 ---------------------------------------ILSGLLQEGERFDLTLCNPPF 190
Query: 252 FESMEEAGLN-----------------PKTSCGGTPEEMVCSGGERAFITRIIEDSVALK 294
S +EA P + GG E+ C GGE F+T++I +SV
Sbjct: 191 HASRDEATRGSQRKWKNLGKQDPKRKLPVLNFGGQNNELWCEGGEIRFVTQLIGESVQYA 250
Query: 295 QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
+ W+TS+V + SNL + + L+K G V+ E QGQ +AWSF
Sbjct: 251 ERVLWFTSLVSKASNLPGIEAALKKSGAKAVRIIEMGQGQKQSRMVAWSF 300
>sp|C1DPF6|RLMF_AZOVD Ribosomal RNA large subunit methyltransferase F OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=rlmF PE=3 SV=1
Length = 335
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 162/351 (46%), Gaps = 77/351 (21%)
Query: 16 IHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGL 75
+HP+N++ DF L +P+ FV + G+ ID+ D A + L R LL +G+
Sbjct: 18 LHPRNRHRGRY-DFPALIRRHPALAAFVILNPYGKRSIDFADPEAVKALNRALLAEHYGI 76
Query: 76 NWW-IPDGQLCPTVPNRSNYIHWIEDLLSS---NIIPTTSRNGDKVKGFDIGTGANCIYP 131
W IP G LCP +P R++Y+H + DLL++ IIP G ++ DIG GANCIYP
Sbjct: 77 RQWDIPPGYLCPPIPGRADYLHGLADLLAAEHGGIIP----RGAALRVLDIGVGANCIYP 132
Query: 132 LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKS 191
L+G GW F+G+D+ +AL AE V++NP ++ I +R+ ++
Sbjct: 133 LIGHREYGWRFLGADIDPIALASAEAIVRANPGLAAAIRLRRQNDPAH------------ 180
Query: 192 VQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251
+ G++R E+FD +CNPPF
Sbjct: 181 ---------------------------------------IFQGLLRSDERFDLSLCNPPF 201
Query: 252 FESMEEA------------GLNPKTSC-----GGTPEEMVCSGGERAFITRIIEDSVALK 294
S EEA L+P+ GG E+ C GGE AF+ R+I +S
Sbjct: 202 HASPEEAVRGSRRKWRNLGKLDPRRKLPLLNFGGQGAELYCPGGEAAFVARMIAESAQFA 261
Query: 295 QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W++S++ + +NL + L++ G V+ QGQ +AW+F+
Sbjct: 262 GQVCWFSSLISKTANLPAARAALQRAGAREVRVVPMAQGQKQSRFVAWTFL 312
>sp|Q3Z3X8|RLMF_SHISS Ribosomal RNA large subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rlmF PE=3 SV=2
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|Q323Y7|RLMF_SHIBS Ribosomal RNA large subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rlmF PE=3 SV=2
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B2TVC2|RLMF_SHIB3 Ribosomal RNA large subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rlmF PE=3
SV=2
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|Q1REB8|RLMF_ECOUT Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rlmF PE=3 SV=2
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|Q0TJP1|RLMF_ECOL5 Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rlmF PE=3 SV=1
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|A1A947|RLMF_ECOK1 Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rlmF PE=3 SV=2
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B7M782|RLMF_ECO8A Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rlmF PE=3 SV=1
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B7MQR1|RLMF_ECO81 Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rlmF PE=3 SV=1
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B7LC90|RLMF_ECO55 Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rlmF PE=3 SV=1
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B7MGR5|RLMF_ECO45 Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rlmF PE=3 SV=1
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|A7ZJM2|RLMF_ECO24 Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rlmF PE=3 SV=2
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B7NNN9|RLMF_ECO7I Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rlmF PE=3 SV=1
Length = 308
Score = 176 bits (445), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 161/350 (46%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLTH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH++ DLL+ + IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHYLADLLAEATGSIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|Q1I5F5|RLMF_PSEE4 Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
entomophila (strain L48) GN=rlmF PE=3 SV=1
Length = 316
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 164/351 (46%), Gaps = 72/351 (20%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++PT+HP+N++ + DF L +P F + G+P ID+ + A R R LL
Sbjct: 3 DKPTLHPRNRH-QGRYDFPALIKAHPDLARFTITNPYGKPSIDFANPEAVRVFNRALLKA 61
Query: 72 DHGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY 130
+G+ W IP LCP +P R++YIH + DLL+ + R G +V+ DIG GANCIY
Sbjct: 62 QYGVQHWDIPADYLCPPIPGRADYIHVLADLLAEDNAGDVPR-GAQVRALDIGVGANCIY 120
Query: 131 PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGK 190
PLLG S W F+GSD+ AL A+ V++N
Sbjct: 121 PLLGHSDYRWRFLGSDIDTTALASAKAIVQAN---------------------------- 152
Query: 191 SVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP 250
+D + + ++ +P +L G+++ E+FD +CNPP
Sbjct: 153 ------KLDKAIGLRQQTQPKH------------------ILAGLLQADERFDVTLCNPP 188
Query: 251 FFESMEEAGLN-----------------PKTSCGGTPEEMVCSGGERAFITRIIEDSVAL 293
F S EEA P + GG E+ C GGE F+++++ +SV
Sbjct: 189 FHASREEATRGSQRKWKNLGKQDPKRKLPVLNFGGQNNELWCEGGEIRFVSQLVGESVQY 248
Query: 294 KQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
+ W+TS+V + SNL + + L+K GV ++ E QGQ +AWSF
Sbjct: 249 AEQVLWFTSLVSKASNLPGIEAALKKAGVKALRIVEMGQGQKQSRMVAWSF 299
>sp|Q8FJM4|RLMF_ECOL6 Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rlmF PE=3
SV=2
Length = 308
Score = 175 bits (443), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHNSATAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|P75782|RLMF_ECOLI Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rlmF PE=1 SV=2
Length = 308
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + SNP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B1IXG1|RLMF_ECOLC Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rlmF PE=3 SV=1
Length = 308
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + SNP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|A7ZY64|RLMF_ECOHS Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O9:H4 (strain HS) GN=rlmF PE=3 SV=2
Length = 308
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + SNP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B1X7D7|RLMF_ECODH Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rlmF PE=3 SV=1
Length = 308
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + SNP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|C4ZXX9|RLMF_ECOBW Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rlmF PE=3 SV=1
Length = 308
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 110/350 (31%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + SNP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B7LJV2|RLMF_ESCF3 Ribosomal RNA large subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rlmF PE=3 SV=1
Length = 308
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P + F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELKQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPA------RASILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|A6WHK9|RLMF_SHEB8 Ribosomal RNA large subunit methyltransferase F OS=Shewanella
baltica (strain OS185) GN=rlmF PE=3 SV=1
Length = 365
Score = 174 bits (442), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 114/366 (31%), Positives = 165/366 (45%), Gaps = 75/366 (20%)
Query: 5 KRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATREL 64
K + R E + +HP+N + N DF L S +P + FV + G +D+ D A + L
Sbjct: 45 KDKPRVEIKKALHPRNAHL-NGYDFPALISAFPQLKTFVRPTPYGALSVDFADPLAVKTL 103
Query: 65 TRVLLLHDHGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIG 123
LL H +G+ W IP+G LCP +P R +Y+H++ DLL+ S DK + DIG
Sbjct: 104 NAALLKHHYGIGSWNIPEGALCPPIPGRVDYVHYVADLLAEG---DKSCAMDKARVLDIG 160
Query: 124 TGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSI 183
TGAN IYP+LG + GW +V SD+ N+ S ++
Sbjct: 161 TGANGIYPILGCQVYGWQYVASDI----------------------------NAHSLTNV 192
Query: 184 QESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFD 243
Q + E N + G + +P + F GV++ E+F+
Sbjct: 193 QSII-------EQNPVLQGRISLRLQPDDKAVFK----------------GVIQAEERFE 229
Query: 244 FCICNPPFFESMEEAG-----------LN--------PKTSCGGTPEEMVCSGGERAFIT 284
+CNPPF SM EA LN PK + GG E+ C GGER F+
Sbjct: 230 LTLCNPPFHASMAEASEGTKRKVNNLQLNRGSSVKAAPKLNFGGQAAELWCQGGERQFLA 289
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
+I +S W+TS+V ++ NLK L ++ V VKT E QG LAWSF
Sbjct: 290 TMIRESQMFADQCLWFTSLVSKQENLKPCYQALAQLNVDTVKTIEMQQGNKITRVLAWSF 349
Query: 345 VPPARK 350
A++
Sbjct: 350 QSAAKR 355
>sp|B8E3W0|RLMF_SHEB2 Ribosomal RNA large subunit methyltransferase F OS=Shewanella
baltica (strain OS223) GN=rlmF PE=3 SV=1
Length = 365
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 164/366 (44%), Gaps = 75/366 (20%)
Query: 5 KRRRRREERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATREL 64
K R R E + +HP+N + N DF L S +P + FV + G ID+ D A + L
Sbjct: 45 KDRPRVEIKKALHPRNAHL-NGYDFPALISAFPRLKTFVRPTPYGALSIDFADPLAVKTL 103
Query: 65 TRVLLLHDHGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIG 123
LL H +G+ W IP G LCP +P R +Y+H++ DLL+ S K + DIG
Sbjct: 104 NAALLKHHYGIGAWDIPQGALCPPIPGRVDYVHYVADLLAEG---DKSCAISKARVLDIG 160
Query: 124 TGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSI 183
TGAN IYP+LG+ + GW FV SD++ +L + ++ NP + I +R
Sbjct: 161 TGANGIYPILGSQVYGWQFVASDISAHSLTNVQSIIEQNPALQGRISLR----------- 209
Query: 184 QESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFD 243
+P + F G+V+ E+F+
Sbjct: 210 ------------------------LQPDDKAVFK----------------GIVQPEERFE 229
Query: 244 FCICNPPFFESMEEAG-----------LN--------PKTSCGGTPEEMVCSGGERAFIT 284
+CNPPF SM EA LN PK + GG E+ C GGER F+
Sbjct: 230 LTLCNPPFHASMAEASEGTKRKVNNLQLNRGSSVKAAPKLNFGGQAAELWCQGGERQFLA 289
Query: 285 RIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
+I +S W+TS+V ++ NLK L ++ V VKT E QG LAWSF
Sbjct: 290 TMIRESQMFADQCLWFTSLVSKQENLKPCYQALAQLKVDTVKTIEMQQGNKITRVLAWSF 349
Query: 345 VPPARK 350
A++
Sbjct: 350 QSAAKR 355
>sp|B5YS99|RLMF_ECO5E Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rlmF PE=3 SV=1
Length = 308
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P + F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELKQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSECKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|Q8X7W6|RLMF_ECO57 Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O157:H7 GN=rlmF PE=3 SV=2
Length = 308
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P + F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELKQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSECKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|Q83LU4|RLMF_SHIFL Ribosomal RNA large subunit methyltransferase F OS=Shigella
flexneri GN=rlmF PE=3 SV=2
Length = 308
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVNFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|Q0T6F4|RLMF_SHIF8 Ribosomal RNA large subunit methyltransferase F OS=Shigella
flexneri serotype 5b (strain 8401) GN=rlmF PE=3 SV=2
Length = 308
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVNFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B1JBB3|RLMF_PSEPW Ribosomal RNA large subunit methyltransferase F OS=Pseudomonas
putida (strain W619) GN=rlmF PE=3 SV=1
Length = 316
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/351 (30%), Positives = 165/351 (47%), Gaps = 72/351 (20%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++PT+HP+N++ + DF L +P F + G+P ID+ + A R R LL
Sbjct: 3 QKPTLHPRNRH-QGRYDFPSLIKAHPDLARFTITNPHGKPSIDFANPEAVRVFNRALLKA 61
Query: 72 DHGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY 130
+G+ W IP LCP +P R++YIH DLL+ + + G +V+ DIG GANCIY
Sbjct: 62 QYGIQHWDIPADYLCPPIPGRADYIHVAADLLAEDNAGEVPK-GAQVRALDIGVGANCIY 120
Query: 131 PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGK 190
PLLG W F+GSD+ VAL A+ V++N +S+ I +R+ +N++
Sbjct: 121 PLLGHCDYRWRFLGSDIDPVALASAKAIVQAN-GLSKAIALRQQNNAKL----------- 168
Query: 191 SVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP 250
+L G++ + E+FD +CNPP
Sbjct: 169 ----------------------------------------ILGGLLEEDERFDLTLCNPP 188
Query: 251 FFESMEEAGLN-----------------PKTSCGGTPEEMVCSGGERAFITRIIEDSVAL 293
F S EEA P + GG E+ C GGE F+++++ +S+
Sbjct: 189 FHASREEATRGSQRKWKNLGKQDPKRKLPVLNFGGQNNELWCEGGEIRFVSQLVGESLQY 248
Query: 294 KQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344
W+TS+V + SNL + + L+K GV V+ E QGQ +AWSF
Sbjct: 249 AVQVLWFTSLVSKASNLPGIEAALKKAGVKAVRIVEMGQGQKQSRMVAWSF 299
>sp|A6T6Q1|RLMF_KLEP7 Ribosomal RNA large subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rlmF PE=3 SV=1
Length = 304
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 168/357 (47%), Gaps = 74/357 (20%)
Query: 10 REERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLL 69
+ ++P +HP+N++ + D L +P + ++ + G ID+ + A + L + LL
Sbjct: 2 KAQKPGLHPRNRHHQRY-DLPALCQAHPDLQGYITLNPLGEQTIDFANPQAVKALNKALL 60
Query: 70 LHDHGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGA 126
H + + W IPDG LCP VP R++YIH + DLL+ S +P + DIGTGA
Sbjct: 61 AHFYAVKHWDIPDGFLCPPVPGRADYIHHLADLLAGDSGEVPKDATI------LDIGTGA 114
Query: 127 NCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQES 186
N IYPL+GA GW F GS++ A A+ + NP ++ I +R+
Sbjct: 115 NLIYPLIGAHEYGWRFTGSEINPQAFASAQAIINGNPGLTRQIRLRR------------- 161
Query: 187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCI 246
Q ES Q+ +H GV+ E +D +
Sbjct: 162 ------QKES--------------------------QAIFH------GVIHKNETYDATL 183
Query: 247 CNPPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVAL 293
CNPPF +S E A GL ++ GG +E+ C GGE AFI+++I +S A
Sbjct: 184 CNPPFHDSAESARAGGERKRRNLGLGAESGLNFGGQQQELWCEGGEVAFISQMIRESQAF 243
Query: 294 KQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350
+ +W+TS+V R NL L L +VG V E QGQ +AWSF+ A++
Sbjct: 244 ARQVKWFTSLVSRGDNLPPLYRLLTEVGAVKVVKKEMAQGQKQSRFIAWSFMDDAKR 300
>sp|B1LM99|RLMF_ECOSM Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rlmF PE=3 SV=1
Length = 308
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 158/348 (45%), Gaps = 70/348 (20%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY 130
+ + NW IPDG LCP VP R++YIH + DLL+ T DIG GANCIY
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAE----ATGSILANASILDIGVGANCIY 118
Query: 131 PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGK 190
PL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 119 PLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR----------------- 161
Query: 191 SVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP 250
+ S + FN G++ EQ+D +CNPP
Sbjct: 162 ------------------QKESGAIFN----------------GIIHKNEQYDATLCNPP 187
Query: 251 FFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQTF 297
F +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 188 FHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAKQV 247
Query: 298 RWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L +VG V E QGQ +AW+F+
Sbjct: 248 MWFTSLVSRGENLPPLYRVLTEVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B7NAA7|RLMF_ECOLU Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rlmF PE=3 SV=1
Length = 308
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 160/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R++YIH + DLL+ + IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEATGSIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPK--TSCGGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDVLNFGGQQQELWCEGGEVAFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QVMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|A7MEZ1|RLMF_CROS8 Ribosomal RNA large subunit methyltransferase F OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rlmF PE=3 SV=1
Length = 309
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 160/356 (44%), Gaps = 77/356 (21%)
Query: 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHD 72
+P +HP+N++ DF L P+ FV S G P ID+ D A + L + LL H
Sbjct: 4 KPGLHPRNRHHSRY-DFDALTESCPALGAFVRPSPAGEPTIDFADPQAVKTLNQALLAHF 62
Query: 73 HGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKG----FDIGTGAN 127
+G+ W IPDG LCP VP R++YIH + DLL+ NG + DIG GAN
Sbjct: 63 YGVREWDIPDGFLCPPVPGRADYIHHLADLLAEG-------NGGALPAQASVLDIGVGAN 115
Query: 128 CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESL 187
CIYPL+G GW F G+D +D A+ A + +NP ++ I +R+
Sbjct: 116 CIYPLIGQHEYGWRFTGTDTSDEAIRSASAIIDANPGLNRAIRLRR-------------- 161
Query: 188 TGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCIC 247
+ S + FN G++ E +D +C
Sbjct: 162 ---------------------QKSPGAIFN----------------GIIHKNESYDATLC 184
Query: 248 NPPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALK 294
NPPF +S + A GL + GG +E+ C GGE FIT++I +S
Sbjct: 185 NPPFHDSADAAEAGNARKRRNLGLAADSGLNFGGQQQELWCEGGEVGFITQMIAESKLFA 244
Query: 295 QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350
+ W+T++V + NL L L + G V E QGQ +AWSF+ A++
Sbjct: 245 RQVLWFTTLVSKGDNLPLLYRALEQAGAVKVVKKEMAQGQKQSRFIAWSFLDTAQR 300
>sp|B7UM03|RLMF_ECO27 Ribosomal RNA large subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rlmF PE=3 SV=1
Length = 308
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 159/348 (45%), Gaps = 70/348 (20%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIY 130
+ + NW IPDG LCP VP R++YIH + DLL+ T N + DIG GANCIY
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADYIHHLADLLAE-ASGTIQANASIL---DIGVGANCIY 118
Query: 131 PLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGK 190
PL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 119 PLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR----------------- 161
Query: 191 SVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP 250
+ S + FN G++ EQ+D +CNPP
Sbjct: 162 ------------------QKESGAIFN----------------GIIHKNEQYDATLCNPP 187
Query: 251 FFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQTF 297
F +S A GLN + GG +E+ C GGE AFI ++IE+S +
Sbjct: 188 FHDSATAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVAFIKKMIEESKGFAKQV 247
Query: 298 RWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 248 MWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
>sp|B5EVS5|RLMF_VIBFM Ribosomal RNA large subunit methyltransferase F OS=Vibrio fischeri
(strain MJ11) GN=rlmF PE=3 SV=1
Length = 319
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 165/361 (45%), Gaps = 86/361 (23%)
Query: 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHD 72
+ ++HP+NK++ N DF L +PFV ++ G I+++D A + L + LL H
Sbjct: 10 KKSLHPRNKHTGNY-DFPALIKACAELKPFVETNQYGNESINFSDPQAVKALNKALLAHF 68
Query: 73 HGLNWW-IPDGQLCPTVPNRSNYIHWIEDLLS---SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + +W IP G LCP +P R++YIH I DLL+ IPT G KVKG D+G GANC
Sbjct: 69 YNVPFWDIPQGYLCPPIPGRADYIHNIADLLAITNEGTIPT----GKKVKGLDVGVGANC 124
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
+YP++G WSFVGSD+ +++ A +NP + IE R N E+
Sbjct: 125 VYPIIGNREYQWSFVGSDIDPQSIKMASFIANNNPSLKG-IECRLQKNEEN--------- 174
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ G+++ E FDF +CN
Sbjct: 175 ------------------------------------------IFKGIIKPTEFFDFTMCN 192
Query: 249 PPFFESMEEAGL------------------------NPKT-SCGGTPEEMVCSGGERAFI 283
PPF S EA N K + GG E+ C GGE AFI
Sbjct: 193 PPFHASEAEATAGTERKQKNLAANKAKKGHSFQEMQNAKALNFGGQKAELWCEGGELAFI 252
Query: 284 TRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWS 343
++ + S +W+T+++ +K N+ L +L K+GV +KT E QGQ +AW+
Sbjct: 253 LKMAQQSREFSLQVQWFTTLISKKENVAELYKELEKIGVKTIKTIEMAQGQKISRFVAWT 312
Query: 344 F 344
+
Sbjct: 313 Y 313
>sp|Q32I85|RLMF_SHIDS Ribosomal RNA large subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rlmF PE=3 SV=2
Length = 308
Score = 172 bits (437), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/350 (30%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 12 ERPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLH 71
++P +HP+N++ D A L + P F+ + G +D+ + A + L + LL H
Sbjct: 4 QKPGLHPRNRHHSRY-DLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAH 62
Query: 72 DHGL-NWWIPDGQLCPTVPNRSNYIHWIEDLLS--SNIIPTTSRNGDKVKGFDIGTGANC 128
+ + NW IPDG LCP VP R+++IH + DLL+ S IP + DIG GANC
Sbjct: 63 FYAVANWDIPDGFLCPPVPGRADHIHHLADLLAEASGTIPANA------SILDIGVGANC 116
Query: 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLT 188
IYPL+G GW F GS+ + AL A+ + +NP ++ I +R+
Sbjct: 117 IYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRR--------------- 161
Query: 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248
+ S + FN G++ EQ+D +CN
Sbjct: 162 --------------------QKESGAIFN----------------GIIHKNEQYDATLCN 185
Query: 249 PPFFESMEEA-----------GLNPKTSC--GGTPEEMVCSGGERAFITRIIEDSVALKQ 295
PPF +S A GLN + GG +E+ C GGE FI ++IE+S +
Sbjct: 186 PPFHDSAAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVTFIKKMIEESKGFAK 245
Query: 296 TFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345
W+TS+V R NL L L VG V E QGQ +AW+F+
Sbjct: 246 QMMWFTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFM 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,098,573
Number of Sequences: 539616
Number of extensions: 7062915
Number of successful extensions: 17694
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 17062
Number of HSP's gapped (non-prelim): 305
length of query: 420
length of database: 191,569,459
effective HSP length: 120
effective length of query: 300
effective length of database: 126,815,539
effective search space: 38044661700
effective search space used: 38044661700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)