Query 014664
Match_columns 420
No_of_seqs 388 out of 2194
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 07:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05971 Methyltransf_10: Prot 100.0 2.3E-88 5E-93 668.2 21.6 278 13-346 4-299 (299)
2 KOG2912 Predicted DNA methylas 100.0 6.6E-80 1.4E-84 601.5 27.2 331 14-401 5-352 (419)
3 PRK11727 23S rRNA mA1618 methy 100.0 3.5E-79 7.5E-84 610.7 27.5 285 13-350 13-313 (321)
4 COG3129 Predicted SAM-dependen 100.0 3.9E-62 8.5E-67 460.3 18.3 261 36-350 1-280 (292)
5 COG2890 HemK Methylase of poly 100.0 1.3E-31 2.9E-36 263.9 21.9 194 70-343 76-276 (280)
6 PRK01544 bifunctional N5-gluta 100.0 2.5E-29 5.5E-34 265.9 21.6 204 70-341 79-304 (506)
7 TIGR00536 hemK_fam HemK family 100.0 7.7E-29 1.7E-33 244.0 22.5 197 70-342 78-281 (284)
8 PRK14966 unknown domain/N5-glu 100.0 1E-28 2.2E-33 254.1 21.8 194 70-342 218-417 (423)
9 KOG2904 Predicted methyltransf 99.9 2.6E-26 5.7E-31 222.2 18.1 204 71-341 111-325 (328)
10 PRK09328 N5-glutamine S-adenos 99.9 3.4E-25 7.4E-30 214.6 22.9 195 70-342 73-274 (275)
11 TIGR03533 L3_gln_methyl protei 99.9 4.5E-25 9.8E-30 217.8 20.0 177 70-323 85-268 (284)
12 PRK11805 N5-glutamine S-adenos 99.9 3.3E-24 7.1E-29 214.0 22.2 178 70-324 97-281 (307)
13 PLN02672 methionine S-methyltr 99.9 1.5E-24 3.3E-29 243.9 20.4 185 70-327 82-301 (1082)
14 TIGR03704 PrmC_rel_meth putati 99.9 1.5E-23 3.3E-28 203.5 19.8 186 70-331 50-243 (251)
15 TIGR03534 RF_mod_PrmC protein- 99.9 5.8E-23 1.2E-27 195.7 21.6 191 70-339 53-250 (251)
16 COG4123 Predicted O-methyltran 99.9 3.5E-21 7.7E-26 186.3 15.0 175 116-355 45-223 (248)
17 PF05175 MTS: Methyltransferas 99.8 2.1E-18 4.6E-23 157.7 18.5 161 75-331 2-163 (170)
18 PRK14967 putative methyltransf 99.7 7.5E-16 1.6E-20 146.4 20.1 172 73-323 5-178 (223)
19 TIGR00537 hemK_rel_arch HemK-r 99.6 1.3E-14 2.9E-19 133.0 18.3 142 117-329 21-164 (179)
20 COG2813 RsmC 16S RNA G1207 met 99.6 1.9E-14 4.1E-19 142.6 16.7 128 117-329 160-287 (300)
21 PRK14968 putative methyltransf 99.6 9.6E-14 2.1E-18 126.3 19.2 145 116-327 24-171 (188)
22 PF13659 Methyltransf_26: Meth 99.6 1.2E-14 2.5E-19 122.9 11.3 114 117-304 2-115 (117)
23 PRK15001 SAM-dependent 23S rib 99.6 4E-14 8.7E-19 145.3 16.1 111 117-306 230-342 (378)
24 KOG3191 Predicted N6-DNA-methy 99.5 1.6E-13 3.5E-18 126.9 14.1 142 116-324 44-188 (209)
25 COG2263 Predicted RNA methylas 99.4 2.5E-12 5.5E-17 119.8 15.8 137 86-323 25-162 (198)
26 PRK09489 rsmC 16S ribosomal RN 99.4 4E-12 8.6E-17 129.2 18.1 117 117-315 198-314 (342)
27 PHA03412 putative methyltransf 99.4 7.7E-13 1.7E-17 127.8 11.6 106 116-299 50-158 (241)
28 PRK10909 rsmD 16S rRNA m(2)G96 99.4 6.4E-12 1.4E-16 118.6 12.0 93 71-176 19-111 (199)
29 PHA03411 putative methyltransf 99.3 7.6E-12 1.7E-16 123.3 11.5 134 117-322 66-207 (279)
30 PRK11783 rlmL 23S rRNA m(2)G24 99.3 1.3E-11 2.9E-16 135.9 14.8 145 116-333 539-684 (702)
31 TIGR01177 conserved hypothetic 99.3 6.6E-11 1.4E-15 119.2 18.4 143 116-339 183-326 (329)
32 PRK15128 23S rRNA m(5)C1962 me 99.3 1.6E-11 3.5E-16 127.0 13.5 134 116-320 221-356 (396)
33 COG2264 PrmA Ribosomal protein 99.3 5.2E-11 1.1E-15 118.6 15.6 141 89-329 147-288 (300)
34 PRK00107 gidB 16S rRNA methylt 99.3 1.4E-10 3.1E-15 108.5 15.9 119 116-324 46-164 (187)
35 PRK08287 cobalt-precorrin-6Y C 99.2 1.4E-10 3.1E-15 107.0 14.5 127 116-331 32-158 (187)
36 PF12847 Methyltransf_18: Meth 99.2 2.2E-10 4.8E-15 95.8 13.8 59 117-176 3-61 (112)
37 PF06325 PrmA: Ribosomal prote 99.2 1.1E-10 2.3E-15 116.6 13.1 137 89-329 146-283 (295)
38 PRK00517 prmA ribosomal protei 99.2 3.4E-10 7.5E-15 109.7 16.1 119 116-329 120-238 (250)
39 TIGR00138 gidB 16S rRNA methyl 99.2 2.1E-10 4.5E-15 106.6 13.7 125 116-330 43-170 (181)
40 TIGR00406 prmA ribosomal prote 99.2 6.6E-10 1.4E-14 110.1 16.5 122 117-329 161-283 (288)
41 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.1E-10 2.4E-15 122.1 10.7 93 71-176 261-354 (443)
42 PRK00377 cbiT cobalt-precorrin 99.2 6E-10 1.3E-14 104.1 13.9 143 116-344 41-184 (198)
43 PRK00121 trmB tRNA (guanine-N( 99.1 6.9E-10 1.5E-14 104.4 12.6 132 116-322 41-174 (202)
44 PF01170 UPF0020: Putative RNA 99.1 1E-09 2.3E-14 101.7 13.6 121 116-313 29-158 (179)
45 PLN02336 phosphoethanolamine N 99.1 1.9E-09 4.2E-14 113.2 17.1 86 69-176 238-323 (475)
46 TIGR00091 tRNA (guanine-N(7)-) 99.1 1E-09 2.2E-14 102.4 13.0 131 116-321 17-149 (194)
47 TIGR02752 MenG_heptapren 2-hep 99.1 8.8E-09 1.9E-13 97.5 18.6 75 94-176 30-105 (231)
48 PRK14902 16S rRNA methyltransf 99.1 1.8E-09 4E-14 112.9 14.4 145 116-321 251-399 (444)
49 PRK03522 rumB 23S rRNA methylu 99.1 9.2E-10 2E-14 110.3 11.3 90 74-176 140-230 (315)
50 PF13847 Methyltransf_31: Meth 99.0 2.3E-09 5.1E-14 95.5 10.6 61 115-177 3-64 (152)
51 PRK10901 16S rRNA methyltransf 99.0 5.8E-09 1.3E-13 108.8 14.6 145 116-321 245-392 (427)
52 TIGR02085 meth_trns_rumB 23S r 99.0 2.6E-09 5.6E-14 109.7 11.0 90 74-176 200-290 (374)
53 smart00650 rADc Ribosomal RNA 98.9 4.1E-09 8.9E-14 96.0 9.7 55 116-176 14-68 (169)
54 PLN02244 tocopherol O-methyltr 98.9 7.4E-08 1.6E-12 97.7 19.3 85 89-176 93-177 (340)
55 TIGR02469 CbiT precorrin-6Y C5 98.9 3.6E-08 7.8E-13 83.2 14.2 57 117-175 21-77 (124)
56 TIGR00095 RNA methyltransferas 98.9 5E-09 1.1E-13 98.0 9.6 93 72-176 16-108 (189)
57 PLN02490 MPBQ/MSBQ methyltrans 98.9 9E-08 2E-12 97.4 19.3 148 116-351 114-281 (340)
58 PRK11036 putative S-adenosyl-L 98.9 2.1E-08 4.6E-13 97.2 13.4 58 116-176 45-102 (255)
59 PRK14896 ksgA 16S ribosomal RN 98.9 1E-08 2.3E-13 100.0 10.8 69 93-176 16-84 (258)
60 TIGR00563 rsmB ribosomal RNA s 98.9 3.3E-08 7.2E-13 103.1 15.2 147 116-321 239-388 (426)
61 PRK11873 arsM arsenite S-adeno 98.9 1.2E-07 2.7E-12 92.3 17.4 59 116-176 78-137 (272)
62 PLN02396 hexaprenyldihydroxybe 98.9 1.3E-07 2.9E-12 95.5 17.9 108 57-175 77-188 (322)
63 PRK15451 tRNA cmo(5)U34 methyl 98.8 2.7E-08 5.8E-13 96.3 12.3 60 116-176 57-118 (247)
64 TIGR00446 nop2p NOL1/NOP2/sun 98.8 3.5E-08 7.6E-13 96.7 13.1 143 116-320 72-218 (264)
65 PLN02233 ubiquinone biosynthes 98.8 2.9E-07 6.2E-12 90.1 19.2 61 116-176 74-136 (261)
66 PRK04457 spermidine synthase; 98.8 1.1E-07 2.3E-12 93.4 16.1 142 93-320 52-194 (262)
67 PTZ00338 dimethyladenosine tra 98.8 1.7E-08 3.6E-13 100.8 10.6 58 116-176 37-94 (294)
68 PRK07402 precorrin-6B methylas 98.8 9.7E-08 2.1E-12 88.9 14.4 58 116-175 41-98 (196)
69 PRK00274 ksgA 16S ribosomal RN 98.8 1.2E-08 2.6E-13 100.3 8.7 55 116-177 43-97 (272)
70 TIGR00477 tehB tellurite resis 98.8 7.3E-08 1.6E-12 90.1 13.5 55 116-175 31-85 (195)
71 TIGR00479 rumA 23S rRNA (uraci 98.8 2.3E-08 4.9E-13 104.2 10.6 88 74-176 259-349 (431)
72 PRK11188 rrmJ 23S rRNA methylt 98.8 1.3E-07 2.8E-12 89.8 14.2 151 116-344 52-207 (209)
73 PRK11783 rlmL 23S rRNA m(2)G24 98.8 9E-08 2E-12 105.9 14.6 61 116-177 191-293 (702)
74 PRK14903 16S rRNA methyltransf 98.8 7.5E-08 1.6E-12 100.8 13.2 145 116-321 238-386 (431)
75 TIGR00740 methyltransferase, p 98.8 2.4E-07 5.1E-12 88.8 15.5 60 116-176 54-115 (239)
76 PRK14901 16S rRNA methyltransf 98.8 1.2E-07 2.6E-12 99.2 14.6 148 116-321 253-404 (434)
77 KOG3420 Predicted RNA methylas 98.8 1E-08 2.2E-13 92.4 5.5 58 115-177 48-106 (185)
78 PRK13944 protein-L-isoaspartat 98.7 1.2E-07 2.5E-12 89.4 12.8 60 116-176 73-133 (205)
79 PRK14904 16S rRNA methyltransf 98.7 1.5E-07 3.2E-12 98.8 13.8 143 116-321 251-397 (445)
80 PRK14103 trans-aconitate 2-met 98.7 1.2E-07 2.5E-12 91.9 11.8 42 116-157 30-71 (255)
81 smart00828 PKS_MT Methyltransf 98.7 3.5E-07 7.6E-12 86.2 14.7 58 118-176 2-59 (224)
82 PRK12335 tellurite resistance 98.7 3.8E-07 8.3E-12 90.2 15.6 55 117-176 122-176 (287)
83 PLN02781 Probable caffeoyl-CoA 98.7 3.9E-08 8.4E-13 94.9 8.0 60 116-176 69-129 (234)
84 TIGR00438 rrmJ cell division p 98.7 4.5E-07 9.7E-12 83.9 14.7 150 116-344 33-188 (188)
85 PLN02585 magnesium protoporphy 98.7 1.2E-07 2.6E-12 95.6 11.7 81 73-162 109-189 (315)
86 PRK00216 ubiE ubiquinone/menaq 98.7 1.2E-06 2.7E-11 82.2 17.5 60 116-176 52-112 (239)
87 PRK11207 tellurite resistance 98.7 2.5E-07 5.5E-12 86.6 12.7 57 116-176 31-87 (197)
88 cd02440 AdoMet_MTases S-adenos 98.7 4.8E-07 1E-11 71.4 12.0 56 118-176 1-56 (107)
89 TIGR00080 pimt protein-L-isoas 98.7 2.2E-07 4.7E-12 88.0 11.4 59 116-176 78-137 (215)
90 PRK05031 tRNA (uracil-5-)-meth 98.6 8.7E-08 1.9E-12 98.1 8.8 56 117-176 208-263 (362)
91 PTZ00098 phosphoethanolamine N 98.6 1.7E-06 3.7E-11 84.8 17.4 56 116-176 53-108 (263)
92 TIGR02987 met_A_Alw26 type II 98.6 1.8E-07 3.8E-12 100.0 11.3 59 115-175 31-97 (524)
93 PRK06922 hypothetical protein; 98.6 4.1E-07 8.9E-12 99.0 14.0 120 116-305 419-538 (677)
94 PRK14121 tRNA (guanine-N(7)-)- 98.6 1E-06 2.2E-11 91.2 16.2 105 58-176 68-181 (390)
95 COG2242 CobL Precorrin-6B meth 98.6 1.4E-06 2.9E-11 81.7 15.1 132 116-335 35-166 (187)
96 PF13649 Methyltransf_25: Meth 98.6 1E-07 2.2E-12 79.2 6.8 55 119-176 1-58 (101)
97 TIGR03587 Pse_Me-ase pseudamin 98.6 2.8E-07 6E-12 87.2 10.5 59 93-159 29-87 (204)
98 TIGR02143 trmA_only tRNA (urac 98.6 1.8E-07 4E-12 95.5 9.6 55 118-176 200-254 (353)
99 PRK08317 hypothetical protein; 98.6 4.3E-06 9.3E-11 78.1 17.9 58 116-176 20-78 (241)
100 PRK01683 trans-aconitate 2-met 98.6 7.5E-07 1.6E-11 86.0 12.9 53 116-175 32-84 (258)
101 PRK00811 spermidine synthase; 98.6 4.2E-06 9.1E-11 83.0 18.3 62 115-176 76-140 (283)
102 PRK03612 spermidine synthase; 98.5 4E-07 8.6E-12 97.6 11.1 135 115-327 297-441 (521)
103 PF02384 N6_Mtase: N-6 DNA Met 98.5 9.2E-07 2E-11 87.9 12.9 59 116-175 47-113 (311)
104 COG2227 UbiG 2-polyprenyl-3-me 98.5 1.2E-07 2.7E-12 91.7 6.3 65 88-163 41-105 (243)
105 PRK10258 biotin biosynthesis p 98.5 1.4E-06 3E-11 83.9 13.5 42 116-159 43-84 (251)
106 PF09445 Methyltransf_15: RNA 98.5 2.5E-06 5.4E-11 78.5 13.7 145 118-331 2-148 (163)
107 TIGR02716 C20_methyl_CrtF C-20 98.5 2.9E-06 6.3E-11 84.4 15.2 60 116-177 150-209 (306)
108 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 1.3E-05 2.9E-10 74.5 18.4 57 116-176 40-97 (223)
109 PF01209 Ubie_methyltran: ubiE 98.5 6.8E-07 1.5E-11 86.4 9.2 59 116-176 48-107 (233)
110 PF03602 Cons_hypoth95: Conser 98.5 2.9E-07 6.3E-12 86.0 6.3 88 74-176 10-101 (183)
111 PRK05134 bifunctional 3-demeth 98.4 9.1E-06 2E-10 77.2 16.4 55 116-175 49-103 (233)
112 PRK00312 pcm protein-L-isoaspa 98.4 2.5E-06 5.4E-11 80.3 12.4 57 116-176 79-135 (212)
113 PRK07580 Mg-protoporphyrin IX 98.4 5.4E-06 1.2E-10 78.1 14.6 57 116-175 64-120 (230)
114 TIGR02021 BchM-ChlM magnesium 98.4 8.4E-07 1.8E-11 83.8 8.9 58 116-176 56-113 (219)
115 COG2226 UbiE Methylase involve 98.4 1.2E-06 2.7E-11 85.1 10.2 74 95-176 37-110 (238)
116 TIGR00755 ksgA dimethyladenosi 98.4 7.9E-07 1.7E-11 86.4 8.9 55 116-176 30-84 (253)
117 PF08241 Methyltransf_11: Meth 98.4 1E-06 2.3E-11 70.3 8.1 51 120-176 1-51 (95)
118 TIGR02072 BioC biotin biosynth 98.4 3.8E-06 8.1E-11 78.7 13.0 55 116-176 35-89 (240)
119 PRK06202 hypothetical protein; 98.4 6.4E-07 1.4E-11 85.5 7.8 47 116-162 61-111 (232)
120 COG1092 Predicted SAM-dependen 98.4 1.3E-06 2.8E-11 90.5 10.3 131 116-318 218-351 (393)
121 PRK04338 N(2),N(2)-dimethylgua 98.4 6E-07 1.3E-11 92.8 7.8 57 117-175 59-115 (382)
122 PRK04266 fibrillarin; Provisio 98.4 1.6E-05 3.5E-10 76.7 17.1 57 116-176 73-129 (226)
123 PRK13942 protein-L-isoaspartat 98.4 3E-06 6.4E-11 80.5 11.6 59 116-176 77-136 (212)
124 COG2519 GCD14 tRNA(1-methylade 98.4 4.9E-06 1.1E-10 81.2 12.8 127 116-331 95-222 (256)
125 KOG1271 Methyltransferases [Ge 98.4 1.5E-06 3.3E-11 81.2 8.8 89 76-177 40-128 (227)
126 COG0116 Predicted N6-adenine-s 98.4 5.3E-06 1.1E-10 85.4 13.3 60 117-177 193-291 (381)
127 PF10672 Methyltrans_SAM: S-ad 98.3 3.3E-06 7.2E-11 84.2 11.2 131 116-322 124-257 (286)
128 PRK11705 cyclopropane fatty ac 98.3 5.9E-06 1.3E-10 85.4 13.5 54 116-175 168-221 (383)
129 COG2230 Cfa Cyclopropane fatty 98.3 2.8E-06 6.2E-11 84.4 10.3 60 116-177 73-132 (283)
130 PLN03075 nicotianamine synthas 98.3 2.1E-06 4.5E-11 85.9 9.0 62 115-176 123-186 (296)
131 PRK15068 tRNA mo(5)U34 methylt 98.3 2.4E-05 5.1E-10 79.1 16.0 58 116-175 123-180 (322)
132 PRK01581 speE spermidine synth 98.3 4.5E-05 9.7E-10 78.5 17.8 62 115-176 150-216 (374)
133 PRK11088 rrmA 23S rRNA methylt 98.2 9.5E-06 2.1E-10 79.6 11.7 53 116-175 86-141 (272)
134 PF03848 TehB: Tellurite resis 98.2 6.9E-06 1.5E-10 77.5 10.1 56 116-176 31-86 (192)
135 PRK13943 protein-L-isoaspartat 98.2 6.7E-06 1.4E-10 83.3 10.3 58 116-175 81-139 (322)
136 TIGR01983 UbiG ubiquinone bios 98.2 7.5E-05 1.6E-09 70.2 16.8 72 95-175 30-101 (224)
137 PF02475 Met_10: Met-10+ like- 98.2 6.4E-06 1.4E-10 78.2 9.3 92 70-176 68-161 (200)
138 TIGR02081 metW methionine bios 98.2 1.3E-05 2.9E-10 74.4 11.0 40 117-157 15-54 (194)
139 COG2265 TrmA SAM-dependent met 98.2 3.6E-06 7.9E-11 88.4 8.0 90 74-176 260-350 (432)
140 TIGR00452 methyltransferase, p 98.2 8.1E-05 1.8E-09 75.2 17.1 135 26-175 38-179 (314)
141 PF08704 GCD14: tRNA methyltra 98.2 7.2E-05 1.6E-09 73.2 15.8 131 116-331 41-173 (247)
142 TIGR00417 speE spermidine synt 98.2 4.5E-05 9.7E-10 75.0 14.3 60 116-175 73-134 (270)
143 PF01596 Methyltransf_3: O-met 98.1 4.2E-06 9.1E-11 79.6 6.4 60 116-176 46-106 (205)
144 PF02353 CMAS: Mycolic acid cy 98.1 7E-06 1.5E-10 81.3 8.1 59 116-176 63-121 (273)
145 KOG1270 Methyltransferases [Co 98.1 2.7E-06 5.9E-11 83.3 5.1 89 78-171 53-143 (282)
146 smart00138 MeTrc Methyltransfe 98.1 2.3E-06 5.1E-11 84.0 4.7 45 115-159 99-152 (264)
147 PLN02366 spermidine synthase 98.1 0.00019 4.2E-09 72.3 18.4 60 116-176 92-154 (308)
148 PF05958 tRNA_U5-meth_tr: tRNA 98.1 1.1E-05 2.5E-10 82.4 9.8 54 118-175 199-252 (352)
149 COG4122 Predicted O-methyltran 98.1 1.1E-05 2.5E-10 77.5 8.9 73 89-174 45-118 (219)
150 PLN02476 O-methyltransferase 98.1 8.7E-06 1.9E-10 80.9 8.0 60 116-176 119-179 (278)
151 PF08242 Methyltransf_12: Meth 98.1 3.6E-07 7.9E-12 75.2 -1.6 44 120-163 1-44 (99)
152 PRK05785 hypothetical protein; 98.1 1.2E-05 2.6E-10 77.2 8.4 42 116-158 52-93 (226)
153 PLN02336 phosphoethanolamine N 98.0 3.5E-05 7.5E-10 81.2 11.6 55 116-176 38-92 (475)
154 KOG2187 tRNA uracil-5-methyltr 98.0 1.3E-05 2.7E-10 84.8 7.7 90 70-174 346-438 (534)
155 COG2521 Predicted archaeal met 98.0 1.2E-05 2.6E-10 77.8 6.8 140 115-333 134-281 (287)
156 PF01135 PCMT: Protein-L-isoas 98.0 7.2E-05 1.6E-09 71.4 11.8 88 74-176 44-132 (209)
157 KOG1540 Ubiquinone biosynthesi 98.0 0.00011 2.4E-09 72.1 12.8 60 115-175 100-167 (296)
158 KOG1499 Protein arginine N-met 98.0 2.6E-05 5.6E-10 79.2 8.5 58 116-176 61-118 (346)
159 PF10294 Methyltransf_16: Puta 97.9 1.6E-05 3.5E-10 73.2 6.3 61 115-176 45-106 (173)
160 TIGR03438 probable methyltrans 97.9 0.00024 5.3E-09 71.0 14.6 61 116-177 64-125 (301)
161 PF04816 DUF633: Family of unk 97.9 0.00016 3.5E-09 68.9 11.7 57 119-176 1-57 (205)
162 COG2518 Pcm Protein-L-isoaspar 97.9 0.00011 2.3E-09 70.3 10.3 58 116-177 73-130 (209)
163 TIGR00308 TRM1 tRNA(guanine-26 97.8 3.7E-05 8E-10 79.5 7.3 59 116-176 45-104 (374)
164 PF05401 NodS: Nodulation prot 97.8 6.4E-05 1.4E-09 71.2 7.7 54 117-176 45-98 (201)
165 COG1041 Predicted DNA modifica 97.8 0.00058 1.3E-08 69.7 14.6 143 116-340 198-342 (347)
166 PLN02589 caffeoyl-CoA O-methyl 97.8 0.00012 2.6E-09 71.7 9.2 60 116-176 80-140 (247)
167 COG0742 N6-adenine-specific me 97.8 9.6E-05 2.1E-09 69.5 8.0 60 115-176 43-102 (187)
168 TIGR01444 fkbM_fam methyltrans 97.7 0.0001 2.2E-09 64.4 7.5 57 118-176 1-57 (143)
169 PF05185 PRMT5: PRMT5 arginine 97.7 0.00013 2.7E-09 77.2 9.1 61 116-177 187-251 (448)
170 COG4106 Tam Trans-aconitate me 97.7 6.3E-05 1.4E-09 72.2 6.0 56 115-177 30-85 (257)
171 PLN02823 spermine synthase 97.7 0.0011 2.4E-08 67.7 15.4 61 116-176 104-166 (336)
172 KOG2899 Predicted methyltransf 97.7 0.00015 3.3E-09 70.6 8.3 47 115-161 58-104 (288)
173 PF02527 GidB: rRNA small subu 97.7 0.0021 4.6E-08 60.2 15.6 148 93-333 30-179 (184)
174 PF07021 MetW: Methionine bios 97.6 9.8E-05 2.1E-09 69.7 6.4 52 116-177 14-65 (193)
175 COG0286 HsdM Type I restrictio 97.6 0.00062 1.3E-08 72.8 12.6 58 117-175 188-249 (489)
176 KOG1500 Protein arginine N-met 97.6 0.00019 4.1E-09 72.8 7.8 59 115-176 177-235 (517)
177 PRK13255 thiopurine S-methyltr 97.6 0.00037 7.9E-09 66.8 9.1 39 116-156 38-76 (218)
178 COG0030 KsgA Dimethyladenosine 97.6 0.00038 8.3E-09 68.6 9.4 56 116-177 31-86 (259)
179 PTZ00146 fibrillarin; Provisio 97.5 0.0077 1.7E-07 60.5 17.8 57 116-176 133-190 (293)
180 PRK04148 hypothetical protein; 97.5 0.00033 7.1E-09 62.7 7.1 51 116-177 17-68 (134)
181 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00062 1.3E-08 66.7 8.7 71 92-177 16-86 (262)
182 TIGR03840 TMPT_Se_Te thiopurin 97.4 0.00041 8.9E-09 66.3 7.2 40 116-157 35-74 (213)
183 COG2384 Predicted SAM-dependen 97.4 0.0038 8.1E-08 60.2 13.2 128 118-333 19-146 (226)
184 KOG0820 Ribosomal RNA adenine 97.3 0.00078 1.7E-08 66.7 8.6 58 116-176 59-116 (315)
185 KOG1541 Predicted protein carb 97.3 0.00033 7.1E-09 67.6 5.5 41 115-157 50-90 (270)
186 KOG3010 Methyltransferase [Gen 97.3 0.00041 8.9E-09 67.6 5.4 57 86-157 17-73 (261)
187 PF02390 Methyltransf_4: Putat 97.2 0.0017 3.8E-08 61.2 9.1 59 117-177 19-77 (195)
188 PRK00050 16S rRNA m(4)C1402 me 97.2 0.00092 2E-08 67.2 7.1 56 117-176 21-77 (296)
189 PF03291 Pox_MCEL: mRNA cappin 97.1 0.0055 1.2E-07 62.5 12.1 177 93-347 40-235 (331)
190 PRK11933 yebU rRNA (cytosine-C 97.1 0.0052 1.1E-07 65.5 12.0 144 116-321 114-262 (470)
191 PF13489 Methyltransf_23: Meth 97.1 0.0019 4.1E-08 56.6 7.4 38 115-154 22-59 (161)
192 PF13679 Methyltransf_32: Meth 97.0 0.0025 5.3E-08 56.7 7.6 60 115-174 25-89 (141)
193 PF07091 FmrO: Ribosomal RNA m 97.0 0.0028 6.1E-08 62.1 8.5 117 24-177 47-164 (251)
194 KOG4300 Predicted methyltransf 96.9 0.0082 1.8E-07 57.7 10.3 58 115-175 76-134 (252)
195 COG4076 Predicted RNA methylas 96.8 0.0013 2.9E-08 62.1 4.5 57 117-177 34-90 (252)
196 PF11599 AviRa: RRNA methyltra 96.7 0.0023 5E-08 61.6 5.4 69 86-161 29-99 (246)
197 PRK10611 chemotaxis methyltran 96.7 0.0032 6.9E-08 63.0 6.5 45 115-159 115-167 (287)
198 COG3897 Predicted methyltransf 96.7 0.0094 2E-07 56.7 8.7 57 115-175 79-135 (218)
199 PRK13256 thiopurine S-methyltr 96.6 0.0089 1.9E-07 57.9 8.9 40 116-157 44-83 (226)
200 PRK10742 putative methyltransf 96.6 0.009 2E-07 58.7 8.8 59 116-176 89-154 (250)
201 COG0220 Predicted S-adenosylme 96.5 0.0083 1.8E-07 58.1 7.8 58 117-176 50-107 (227)
202 PF01564 Spermine_synth: Sperm 96.4 0.032 7E-07 54.4 11.0 62 115-176 76-139 (246)
203 COG2520 Predicted methyltransf 96.4 0.0076 1.6E-07 61.7 6.8 60 116-177 189-248 (341)
204 KOG1501 Arginine N-methyltrans 96.3 0.0063 1.4E-07 63.9 6.0 60 114-175 65-124 (636)
205 KOG2730 Methylase [General fun 96.3 0.0021 4.6E-08 62.0 2.3 58 117-177 96-153 (263)
206 COG0144 Sun tRNA and rRNA cyto 96.3 0.14 3E-06 52.8 15.3 147 116-321 157-308 (355)
207 KOG1663 O-methyltransferase [S 96.1 0.023 5E-07 55.2 8.2 98 57-176 34-134 (237)
208 PF01861 DUF43: Protein of unk 95.9 0.034 7.4E-07 54.4 8.4 59 116-178 45-103 (243)
209 COG4976 Predicted methyltransf 95.9 0.0038 8.1E-08 60.8 1.6 41 116-158 126-166 (287)
210 COG0357 GidB Predicted S-adeno 95.8 0.033 7.2E-07 53.6 7.9 77 92-175 48-125 (215)
211 PF00891 Methyltransf_2: O-met 95.8 0.022 4.8E-07 54.5 6.8 54 116-178 101-154 (241)
212 PF06962 rRNA_methylase: Putat 95.6 0.18 3.8E-06 45.6 11.3 111 141-323 1-116 (140)
213 TIGR00478 tly hemolysin TlyA f 95.6 0.021 4.5E-07 55.4 5.4 38 116-154 76-113 (228)
214 PF08003 Methyltransf_9: Prote 95.4 0.056 1.2E-06 54.7 8.2 42 115-157 115-156 (315)
215 PLN02232 ubiquinone biosynthes 95.1 0.43 9.4E-06 43.2 12.3 34 143-176 1-35 (160)
216 PRK01544 bifunctional N5-gluta 95.1 0.063 1.4E-06 57.8 7.8 59 115-175 347-405 (506)
217 KOG2671 Putative RNA methylase 94.9 0.02 4.4E-07 58.5 3.2 79 72-153 142-244 (421)
218 KOG1975 mRNA cap methyltransfe 94.9 0.19 4E-06 51.4 9.9 156 81-320 90-250 (389)
219 COG0421 SpeE Spermidine syntha 94.9 0.1 2.2E-06 52.3 8.0 61 116-176 77-139 (282)
220 PF01739 CheR: CheR methyltran 94.4 0.051 1.1E-06 51.5 4.3 44 115-158 31-83 (196)
221 KOG2361 Predicted methyltransf 94.3 0.056 1.2E-06 53.0 4.7 46 117-163 73-121 (264)
222 PF12147 Methyltransf_20: Puta 94.3 0.33 7.2E-06 48.9 10.0 65 113-178 133-199 (311)
223 KOG1661 Protein-L-isoaspartate 94.1 0.28 6E-06 47.4 8.7 47 116-162 83-131 (237)
224 KOG2915 tRNA(1-methyladenosine 94.0 1.4 3E-05 44.3 13.5 62 116-178 106-168 (314)
225 PF05724 TPMT: Thiopurine S-me 93.8 0.073 1.6E-06 51.2 4.3 39 116-156 38-76 (218)
226 TIGR00497 hsdM type I restrict 93.6 0.17 3.8E-06 54.2 7.2 47 117-163 219-269 (501)
227 PF07669 Eco57I: Eco57I restri 93.6 0.091 2E-06 44.7 4.1 66 241-320 2-72 (106)
228 KOG3115 Methyltransferase-like 93.6 0.096 2.1E-06 50.3 4.6 48 115-162 60-107 (249)
229 PF05219 DREV: DREV methyltran 93.3 0.28 6.1E-06 48.6 7.5 84 60-152 43-129 (265)
230 PRK11524 putative methyltransf 93.2 0.36 7.7E-06 47.9 8.1 72 239-322 25-96 (284)
231 COG1352 CheR Methylase of chem 92.9 0.15 3.1E-06 50.8 4.9 43 115-157 96-147 (268)
232 PF03059 NAS: Nicotianamine sy 92.8 0.43 9.2E-06 47.7 8.0 85 89-176 97-183 (276)
233 PF08123 DOT1: Histone methyla 92.7 0.28 6.1E-06 46.8 6.4 45 116-161 43-88 (205)
234 PF06080 DUF938: Protein of un 92.7 0.85 1.8E-05 43.7 9.5 45 118-162 28-72 (204)
235 PF02005 TRM: N2,N2-dimethylgu 92.6 0.32 6.9E-06 50.6 7.2 61 115-176 49-111 (377)
236 KOG4058 Uncharacterized conser 92.6 0.2 4.4E-06 46.0 4.9 81 84-176 50-131 (199)
237 PF09243 Rsm22: Mitochondrial 91.4 0.45 9.8E-06 47.1 6.4 48 115-162 33-81 (274)
238 TIGR00006 S-adenosyl-methyltra 91.4 1.1 2.3E-05 45.5 9.1 57 117-176 22-78 (305)
239 PF01555 N6_N4_Mtase: DNA meth 91.4 0.4 8.7E-06 44.2 5.7 40 116-157 192-231 (231)
240 cd00315 Cyt_C5_DNA_methylase C 91.2 0.46 1E-05 47.0 6.2 40 118-159 2-42 (275)
241 PF05148 Methyltransf_8: Hypot 90.7 3.9 8.5E-05 39.6 11.7 76 238-345 119-196 (219)
242 PF01189 Nol1_Nop2_Fmu: NOL1/N 90.7 0.69 1.5E-05 46.1 6.9 144 116-321 86-239 (283)
243 COG0500 SmtA SAM-dependent met 90.6 1.1 2.3E-05 35.7 6.8 54 119-175 52-106 (257)
244 PHA01634 hypothetical protein 89.3 0.82 1.8E-05 41.1 5.4 46 115-163 28-75 (156)
245 PRK13699 putative methylase; P 89.2 2.7 5.9E-05 40.5 9.6 75 238-324 17-91 (227)
246 PRK11524 putative methyltransf 88.9 1.2 2.5E-05 44.3 7.0 45 115-161 208-252 (284)
247 COG1867 TRM1 N2,N2-dimethylgua 88.9 0.85 1.8E-05 47.3 6.0 58 116-175 53-110 (380)
248 TIGR03439 methyl_EasF probable 88.4 1.2 2.5E-05 45.5 6.6 45 116-160 77-125 (319)
249 PRK11760 putative 23S rRNA C24 85.5 2.2 4.9E-05 44.1 6.8 76 88-176 184-261 (357)
250 COG3963 Phospholipid N-methylt 85.2 2.8 6E-05 39.5 6.6 76 82-176 27-103 (194)
251 PF07757 AdoMet_MTase: Predict 84.1 0.9 2E-05 39.5 2.8 31 116-148 59-89 (112)
252 PF13578 Methyltransf_24: Meth 84.0 0.63 1.4E-05 38.6 1.8 55 120-176 1-58 (106)
253 PF01728 FtsJ: FtsJ-like methy 83.9 0.75 1.6E-05 42.0 2.4 36 115-150 23-59 (181)
254 KOG3045 Predicted RNA methylas 83.5 13 0.00028 37.4 10.8 43 283-325 243-287 (325)
255 COG0293 FtsJ 23S rRNA methylas 83.3 32 0.0007 33.1 13.2 60 286-346 141-203 (205)
256 PF01795 Methyltransf_5: MraW 82.5 1.6 3.5E-05 44.4 4.3 58 116-176 21-78 (310)
257 PF00145 DNA_methylase: C-5 cy 81.8 2.4 5.3E-05 41.4 5.2 41 118-160 2-43 (335)
258 PRK13699 putative methylase; P 81.7 4.9 0.00011 38.8 7.1 45 116-162 164-208 (227)
259 PF04989 CmcI: Cephalosporin h 80.9 1.2 2.7E-05 42.7 2.7 60 115-177 32-95 (206)
260 PRK10458 DNA cytosine methylas 79.3 7.5 0.00016 41.7 8.2 72 82-159 58-130 (467)
261 KOG2078 tRNA modification enzy 79.2 1.3 2.8E-05 46.9 2.3 57 117-176 251-308 (495)
262 PF05050 Methyltransf_21: Meth 78.5 5.1 0.00011 35.0 5.7 53 121-174 1-59 (167)
263 KOG2793 Putative N2,N2-dimethy 77.9 3.3 7.1E-05 40.9 4.6 37 115-152 86-122 (248)
264 KOG3201 Uncharacterized conser 76.5 1 2.2E-05 42.1 0.7 47 116-162 30-77 (201)
265 COG0275 Predicted S-adenosylme 75.7 15 0.00033 37.4 8.7 57 117-176 25-82 (314)
266 KOG1253 tRNA methyltransferase 75.6 1.8 4E-05 46.5 2.3 104 62-175 49-169 (525)
267 PF04672 Methyltransf_19: S-ad 74.0 6.7 0.00014 39.2 5.7 60 117-178 70-132 (267)
268 COG1063 Tdh Threonine dehydrog 72.9 11 0.00024 38.4 7.2 40 118-157 171-211 (350)
269 PF02636 Methyltransf_28: Puta 68.5 5.6 0.00012 38.6 3.7 72 96-172 4-87 (252)
270 PRK01747 mnmC bifunctional tRN 67.7 24 0.00052 39.2 8.9 58 271-342 181-238 (662)
271 PF01234 NNMT_PNMT_TEMT: NNMT/ 67.6 3.7 8.1E-05 40.7 2.3 43 116-159 57-99 (256)
272 PRK00536 speE spermidine synth 67.1 10 0.00022 37.7 5.3 76 71-157 37-112 (262)
273 PF03141 Methyltransf_29: Puta 66.9 5.1 0.00011 43.2 3.3 53 76-135 84-137 (506)
274 COG1064 AdhP Zn-dependent alco 66.8 11 0.00024 38.9 5.6 82 73-158 122-209 (339)
275 PF05891 Methyltransf_PK: AdoM 66.7 13 0.00028 36.1 5.8 46 115-161 55-100 (218)
276 COG4262 Predicted spermidine s 66.5 16 0.00036 38.4 6.7 60 116-176 290-355 (508)
277 TIGR00675 dcm DNA-methyltransf 63.6 11 0.00023 38.2 4.7 39 119-159 1-40 (315)
278 KOG2352 Predicted spermine/spe 60.4 4.3 9.4E-05 43.6 1.3 47 115-161 295-341 (482)
279 COG0270 Dcm Site-specific DNA 59.9 16 0.00034 37.1 5.3 43 116-160 3-46 (328)
280 KOG2651 rRNA adenine N-6-methy 59.6 16 0.00034 38.6 5.1 42 116-158 154-195 (476)
281 PRK12826 3-ketoacyl-(acyl-carr 56.4 23 0.0005 32.8 5.4 57 117-177 7-65 (251)
282 KOG3987 Uncharacterized conser 56.3 4.6 0.0001 39.3 0.7 41 114-156 111-151 (288)
283 KOG2940 Predicted methyltransf 53.5 14 0.00031 36.6 3.5 42 116-158 73-114 (325)
284 PF12368 DUF3650: Protein of u 53.0 4.7 0.0001 26.8 0.1 8 16-23 4-11 (28)
285 PF01555 N6_N4_Mtase: DNA meth 52.1 26 0.00055 32.1 4.9 75 242-323 1-77 (231)
286 PRK05854 short chain dehydroge 50.9 45 0.00097 33.1 6.7 59 117-177 15-75 (313)
287 PF04445 SAM_MT: Putative SAM- 50.5 52 0.0011 32.3 6.9 60 116-177 76-142 (234)
288 COG1568 Predicted methyltransf 49.0 34 0.00073 34.8 5.3 58 117-177 154-211 (354)
289 COG1565 Uncharacterized conser 47.7 65 0.0014 33.7 7.4 61 96-162 64-132 (370)
290 KOG2920 Predicted methyltransf 47.6 12 0.00027 37.6 2.1 37 116-153 117-153 (282)
291 PTZ00357 methyltransferase; Pr 47.1 61 0.0013 37.0 7.4 63 116-178 701-774 (1072)
292 PRK08340 glucose-1-dehydrogena 45.7 38 0.00081 32.1 5.1 55 118-177 2-58 (259)
293 cd08283 FDH_like_1 Glutathione 43.3 53 0.0011 33.5 6.0 42 117-158 186-228 (386)
294 PRK06125 short chain dehydroge 42.4 96 0.0021 29.2 7.3 58 117-177 8-67 (259)
295 PF11899 DUF3419: Protein of u 42.3 48 0.0011 34.7 5.6 43 117-161 37-79 (380)
296 PF03514 GRAS: GRAS domain fam 41.9 48 0.001 34.4 5.5 49 113-161 108-167 (374)
297 PRK05599 hypothetical protein; 41.7 56 0.0012 30.9 5.6 56 119-177 3-59 (246)
298 KOG3178 Hydroxyindole-O-methyl 40.2 47 0.001 34.4 5.0 58 117-182 179-236 (342)
299 PRK06940 short chain dehydroge 40.1 83 0.0018 30.4 6.6 50 125-177 9-59 (275)
300 PRK07102 short chain dehydroge 40.0 1.4E+02 0.003 27.8 8.0 57 118-177 3-61 (243)
301 PRK08303 short chain dehydroge 39.4 62 0.0013 32.2 5.7 58 116-177 8-77 (305)
302 PRK06124 gluconate 5-dehydroge 39.2 1.7E+02 0.0036 27.4 8.4 58 116-177 11-70 (256)
303 COG5379 BtaA S-adenosylmethion 39.1 62 0.0014 33.3 5.5 44 115-161 63-107 (414)
304 PF13651 EcoRI_methylase: Aden 38.9 14 0.00031 37.9 1.1 12 241-252 135-146 (336)
305 PRK08339 short chain dehydroge 37.9 1.7E+02 0.0037 27.9 8.4 58 117-177 9-68 (263)
306 PRK07063 short chain dehydroge 37.2 1.9E+02 0.0041 27.2 8.5 59 117-177 8-68 (260)
307 KOG0024 Sorbitol dehydrogenase 37.0 67 0.0014 33.3 5.4 41 117-157 171-212 (354)
308 KOG1227 Putative methyltransfe 36.9 9.5 0.00021 39.0 -0.5 59 117-177 196-255 (351)
309 PRK06172 short chain dehydroge 36.0 1.9E+02 0.0042 26.9 8.3 57 117-177 8-66 (253)
310 KOG0022 Alcohol dehydrogenase, 35.9 72 0.0016 33.1 5.4 41 117-157 194-235 (375)
311 PRK07677 short chain dehydroge 35.8 1.9E+02 0.0041 27.1 8.2 56 118-177 3-60 (252)
312 PRK07666 fabG 3-ketoacyl-(acyl 35.7 2.1E+02 0.0045 26.5 8.3 57 117-177 8-66 (239)
313 PRK08213 gluconate 5-dehydroge 35.6 2.1E+02 0.0045 26.9 8.4 57 117-177 13-71 (259)
314 PRK05867 short chain dehydroge 35.0 2.1E+02 0.0046 26.8 8.4 57 117-177 10-68 (253)
315 PRK07326 short chain dehydroge 34.4 1.9E+02 0.0042 26.5 7.9 56 117-177 7-64 (237)
316 PRK07814 short chain dehydroge 34.0 2.1E+02 0.0045 27.1 8.2 57 117-177 11-69 (263)
317 PRK06949 short chain dehydroge 34.0 2.3E+02 0.0051 26.3 8.5 58 116-177 9-68 (258)
318 PRK07791 short chain dehydroge 33.7 85 0.0018 30.6 5.6 57 117-177 7-74 (286)
319 PRK07576 short chain dehydroge 33.5 2.2E+02 0.0048 27.0 8.4 57 117-177 10-68 (264)
320 KOG2352 Predicted spermine/spe 33.4 3.5E+02 0.0076 29.5 10.3 54 117-175 50-104 (482)
321 PRK05872 short chain dehydroge 33.3 75 0.0016 31.0 5.2 56 116-176 9-66 (296)
322 PRK08251 short chain dehydroge 33.3 2.3E+02 0.0049 26.3 8.2 58 118-177 4-63 (248)
323 COG1062 AdhC Zn-dependent alco 32.9 82 0.0018 32.9 5.4 41 117-157 187-228 (366)
324 PRK12481 2-deoxy-D-gluconate 3 32.8 84 0.0018 29.8 5.2 55 117-177 9-65 (251)
325 TIGR01500 sepiapter_red sepiap 32.7 2E+02 0.0044 27.1 7.9 57 119-177 3-65 (256)
326 PF02737 3HCDH_N: 3-hydroxyacy 32.5 1.4E+02 0.003 27.5 6.5 42 120-161 3-44 (180)
327 PRK08589 short chain dehydroge 32.3 1E+02 0.0022 29.5 5.8 56 117-177 7-64 (272)
328 PRK07454 short chain dehydroge 31.8 2.8E+02 0.006 25.6 8.5 57 117-177 7-65 (241)
329 PRK06181 short chain dehydroge 31.5 2.5E+02 0.0054 26.4 8.3 56 118-177 3-60 (263)
330 PRK14045 1-aminocyclopropane-1 31.4 1.6E+02 0.0034 29.8 7.2 83 61-149 137-221 (329)
331 PRK09424 pntA NAD(P) transhydr 30.8 1.1E+02 0.0023 33.5 6.1 104 48-157 85-206 (509)
332 PRK08416 7-alpha-hydroxysteroi 30.7 1.2E+02 0.0027 28.6 6.0 58 117-177 9-69 (260)
333 PRK06197 short chain dehydroge 30.4 1.3E+02 0.0028 29.4 6.2 59 117-177 17-77 (306)
334 PRK07523 gluconate 5-dehydroge 30.3 2.8E+02 0.006 26.0 8.3 57 117-177 11-69 (255)
335 PF00107 ADH_zinc_N: Zinc-bind 29.0 88 0.0019 26.1 4.2 30 127-157 3-32 (130)
336 PRK05855 short chain dehydroge 28.6 74 0.0016 33.6 4.5 94 79-177 267-374 (582)
337 PRK07097 gluconate 5-dehydroge 28.5 3.1E+02 0.0067 25.9 8.4 57 117-177 11-69 (265)
338 PF02254 TrkA_N: TrkA-N domain 28.4 91 0.002 25.7 4.2 44 124-176 4-49 (116)
339 PF07942 N2227: N2227-like pro 28.1 2.3E+02 0.0049 28.4 7.5 68 89-159 31-98 (270)
340 PRK07904 short chain dehydroge 27.8 2.6E+02 0.0055 26.6 7.7 60 115-177 7-70 (253)
341 PRK07062 short chain dehydroge 27.5 3.1E+02 0.0067 25.8 8.2 59 117-177 9-69 (265)
342 PRK06194 hypothetical protein; 26.8 2E+02 0.0044 27.4 6.8 57 117-177 7-65 (287)
343 KOG1201 Hydroxysteroid 17-beta 26.6 3.2E+02 0.0069 28.0 8.2 58 115-177 37-96 (300)
344 PRK09242 tropinone reductase; 26.6 3.7E+02 0.008 25.1 8.5 59 117-177 10-70 (257)
345 PRK05876 short chain dehydroge 26.6 3.3E+02 0.0071 26.2 8.3 57 117-177 7-65 (275)
346 PF12692 Methyltransf_17: S-ad 26.6 1.4E+02 0.0031 27.6 5.2 46 93-148 16-61 (160)
347 PRK12429 3-hydroxybutyrate deh 26.3 2.3E+02 0.0049 26.3 6.9 56 118-177 6-63 (258)
348 PRK12384 sorbitol-6-phosphate 26.1 3.6E+02 0.0077 25.2 8.3 58 118-177 4-63 (259)
349 PLN02989 cinnamyl-alcohol dehy 25.9 2.2E+02 0.0047 27.9 7.0 60 116-177 5-66 (325)
350 TIGR01712 phage_N6A_met phage 25.7 34 0.00073 31.9 1.1 9 244-252 64-72 (166)
351 PRK07035 short chain dehydroge 25.5 3.9E+02 0.0085 24.8 8.4 57 117-177 9-67 (252)
352 PRK07533 enoyl-(acyl carrier p 25.5 1.1E+02 0.0024 29.1 4.7 56 117-176 11-69 (258)
353 PRK08945 putative oxoacyl-(acy 25.5 3.1E+02 0.0066 25.5 7.7 58 116-176 12-71 (247)
354 PLN02668 indole-3-acetate carb 24.7 51 0.0011 34.7 2.3 19 116-134 64-82 (386)
355 PRK08862 short chain dehydroge 24.6 3.8E+02 0.0083 25.1 8.2 56 117-176 6-63 (227)
356 PRK08217 fabG 3-ketoacyl-(acyl 24.3 4.2E+02 0.0091 24.3 8.3 57 117-177 6-64 (253)
357 PRK06196 oxidoreductase; Provi 24.3 1.7E+02 0.0037 28.8 5.9 53 117-177 27-81 (315)
358 PRK07890 short chain dehydroge 24.3 4.1E+02 0.0089 24.6 8.3 57 117-177 6-64 (258)
359 PF07101 DUF1363: Protein of u 24.1 27 0.00058 29.9 0.1 11 119-129 6-16 (124)
360 PLN02780 ketoreductase/ oxidor 24.0 3E+02 0.0064 27.5 7.6 58 117-176 54-113 (320)
361 PRK05866 short chain dehydroge 23.8 4E+02 0.0087 26.0 8.4 57 117-177 41-99 (293)
362 TIGR03206 benzo_BadH 2-hydroxy 23.7 4.6E+02 0.01 24.1 8.5 57 117-177 4-62 (250)
363 PRK06914 short chain dehydroge 23.4 4.2E+02 0.0092 25.1 8.3 58 118-177 5-64 (280)
364 PRK07478 short chain dehydroge 23.4 4.5E+02 0.0098 24.5 8.4 57 117-177 7-65 (254)
365 PRK06935 2-deoxy-D-gluconate 3 23.2 1.7E+02 0.0037 27.5 5.5 56 117-177 16-73 (258)
366 COG1189 Predicted rRNA methyla 23.0 99 0.0021 30.6 3.8 39 115-154 79-117 (245)
367 PRK05650 short chain dehydroge 23.0 3.9E+02 0.0085 25.3 8.0 56 118-177 2-59 (270)
368 PF03721 UDPG_MGDP_dh_N: UDP-g 22.8 1.7E+02 0.0036 27.3 5.2 32 121-154 5-38 (185)
369 PF01481 Arteri_nucleo: Arteri 22.8 81 0.0018 27.7 2.8 45 375-419 67-114 (116)
370 PRK08277 D-mannonate oxidoredu 22.7 4.5E+02 0.0097 24.9 8.4 57 117-177 11-69 (278)
371 PF01269 Fibrillarin: Fibrilla 22.6 7.5E+02 0.016 24.3 10.3 58 116-177 74-132 (229)
372 PRK08993 2-deoxy-D-gluconate 3 22.5 1.5E+02 0.0034 27.8 5.0 55 117-177 11-67 (253)
373 PRK05786 fabG 3-ketoacyl-(acyl 22.5 4.8E+02 0.01 23.8 8.3 56 117-177 6-63 (238)
374 PRK08703 short chain dehydroge 22.4 3.4E+02 0.0074 25.0 7.3 57 117-176 7-65 (239)
375 PF04378 RsmJ: Ribosomal RNA s 22.2 4.4E+02 0.0095 26.0 8.2 128 120-330 62-192 (245)
376 PRK05808 3-hydroxybutyryl-CoA 22.0 1.5E+02 0.0033 28.9 5.0 40 119-160 6-47 (282)
377 TIGR01832 kduD 2-deoxy-D-gluco 21.8 2E+02 0.0044 26.7 5.6 55 117-177 6-62 (248)
378 PRK12824 acetoacetyl-CoA reduc 21.8 3.7E+02 0.0081 24.6 7.4 57 118-177 4-62 (245)
379 PRK06139 short chain dehydroge 21.8 4.1E+02 0.009 26.7 8.2 57 117-177 8-66 (330)
380 KOG4589 Cell division protein 21.7 1.2E+02 0.0026 29.4 3.9 32 116-148 70-103 (232)
381 PLN02253 xanthoxin dehydrogena 21.5 3.8E+02 0.0081 25.5 7.5 56 117-177 19-76 (280)
382 PRK08293 3-hydroxybutyryl-CoA 21.4 2.5E+02 0.0053 27.6 6.4 41 118-160 5-47 (287)
383 PF07279 DUF1442: Protein of u 21.2 6.4E+02 0.014 24.6 8.8 59 116-175 42-104 (218)
384 KOG0822 Protein kinase inhibit 21.0 2E+02 0.0042 32.0 5.8 60 116-177 368-431 (649)
385 COG1255 Uncharacterized protei 20.7 1.4E+02 0.003 26.7 3.8 32 116-150 14-47 (129)
386 PRK08085 gluconate 5-dehydroge 20.3 5.5E+02 0.012 23.9 8.3 57 117-177 10-68 (254)
387 PF05869 Dam: DNA N-6-adenine- 20.3 47 0.001 31.2 0.9 10 244-253 66-75 (181)
388 PRK08643 acetoin reductase; Va 20.2 3.3E+02 0.0071 25.4 6.7 56 118-177 4-61 (256)
389 PF02086 MethyltransfD12: D12 20.0 1.6E+02 0.0035 27.9 4.6 58 93-161 7-64 (260)
No 1
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=100.00 E-value=2.3e-88 Score=668.16 Aligned_cols=278 Identities=51% Similarity=0.944 Sum_probs=177.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhhcCCcE-EEecCCceeCCCCCc
Q 014664 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNR 91 (420)
Q Consensus 13 ~~~mHprN~y~~~~~dF~~La~~yP~l~~~v~~~~~g~~~IDf~d~~a~r~Lt~aLL~~ffgl~-~~vp~g~LiPrvP~R 91 (420)
++.|||||+|+ ++|||++||++||+|++||..+.+|+.+|||+|++||++||+|||++||||+ |+||+|+|||+||+|
T Consensus 4 ~~~mHprN~~~-~~~dF~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~Ln~aLLk~dfgl~~wdiP~~~LcP~iP~R 82 (299)
T PF05971_consen 4 KKSMHPRNPYK-DRYDFAALAKKYPELKKFVIINKKGRVSIDFSDPEAVRELNKALLKHDFGLDVWDIPEGRLCPPIPNR 82 (299)
T ss_dssp ----------------------------------------S-TTSHHHHHHHHHHHHHHHH--------TTS----HHHH
T ss_pred cCCCCCCCCCC-CCCCHHHHHHhCcchhHhhEECCCCcEEEecCCHHHHHHHHHHHHHHhcCCccccCCCCCcCCCCchh
Confidence 46799999999 5889999999999999999999999999999999999999999999999998 699999999999999
Q ss_pred HhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 014664 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (420)
Q Consensus 92 ~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l 171 (420)
+||||||+|||...... ....+++||||||++|||++|+++.++|+|+|+|||+.+++.|++|+++|++|+++|++
T Consensus 83 ~nYi~~i~DlL~~~~~~----~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l 158 (299)
T PF05971_consen 83 LNYIHWIADLLASSNPG----IPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHT--TCG----CS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred HHHHHHHHHHhhccccc----cccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEE
Confidence 99999999999864211 11368999999999999999999999999999999999999999999999669999999
Q ss_pred EEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCc
Q 014664 172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251 (420)
Q Consensus 172 ~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF 251 (420)
+++.... .||.+++...+.||||||||||
T Consensus 159 ~~~~~~~---------------------------------------------------~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 159 RKQKNPD---------------------------------------------------NIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp EE--ST----------------------------------------------------SSTTTSTT--S-EEEEEE----
T ss_pred EEcCCcc---------------------------------------------------ccchhhhcccceeeEEecCCcc
Confidence 9875321 3677777777899999999999
Q ss_pred ccCccccc-----------C------CCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHH
Q 014664 252 FESMEEAG-----------L------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI 314 (420)
Q Consensus 252 ~~s~eea~-----------~------eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~ 314 (420)
|++.+|+. . +|..+|+|+.+||||+|||++||++||+||..+..++.|||+||||+++|+.|+
T Consensus 188 y~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~ 267 (299)
T PF05971_consen 188 YSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLK 267 (299)
T ss_dssp -SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHH
T ss_pred ccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHH
Confidence 99998752 1 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEEEecCCCeeeEEEEEeecC
Q 014664 315 SKLRKVGVTIVKTTEFVQGQTCRWGLAWSFVP 346 (420)
Q Consensus 315 ~~L~~~g~~~v~~~e~~qG~t~Rw~lAWsF~~ 346 (420)
+.|++.|+.++++++|.||+|.||+|||||++
T Consensus 268 ~~L~~~~~~~~~~~e~~QG~t~rw~lAWsF~d 299 (299)
T PF05971_consen 268 KELKKLGATNYKVTEMCQGQTKRWILAWSFLD 299 (299)
T ss_dssp HHHHHTT-SEEEEEEEEETTEEEEEEEEES--
T ss_pred HHHHhcCCceEEEEEccCCceEEEEEEEeccC
Confidence 99999999999999999999999999999974
No 2
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=100.00 E-value=6.6e-80 Score=601.46 Aligned_cols=331 Identities=49% Similarity=0.837 Sum_probs=281.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhhcCCcEEEecCCceeCCCCCcHh
Q 014664 14 PTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSN 93 (420)
Q Consensus 14 ~~mHprN~y~~~~~dF~~La~~yP~l~~~v~~~~~g~~~IDf~d~~a~r~Lt~aLL~~ffgl~~~vp~g~LiPrvP~R~n 93 (420)
+.|||||+|+++||||+.||..||+|++||+.+.+||++|||+|++|+|+||++||++||||.++||+|+|||+||+|+|
T Consensus 5 k~mhpRn~Y~dkPPDfa~LaseyPsfK~fvq~~~ngRv~~Dfkd~~AvR~Lt~tLL~~Dfgl~veiP~grLcPtVPnR~n 84 (419)
T KOG2912|consen 5 KSMHPRNRYKDKPPDFAYLASEYPSFKQFVQINLNGRVSLDFKDPEAVRALTCTLLREDFGLSVEIPLGRLCPTVPNRLN 84 (419)
T ss_pred cccCCcccccCCCccHHHHHHhCccchhheEeccCCeEEeecCCHHHHHHHHHHHHhhccCceEecCccccCCCCccchh
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEE
Q 014664 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRK 173 (420)
Q Consensus 94 yi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~ 173 (420)
|||||+|||.+.. ..++..++++|||||+.|||++++++..+|.++|+|||+..+..|+.|+..|+ ++++|.+++
T Consensus 85 YihwI~DLLss~q----~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~-lss~ikvV~ 159 (419)
T KOG2912|consen 85 YIHWIEDLLSSQQ----SDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN-LSSLIKVVK 159 (419)
T ss_pred hHHHHHHHhhccc----CCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccc-cccceeeEE
Confidence 9999999998752 11233356999999999999999999999999999999999999999999995 999999998
Q ss_pred ccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCccc
Q 014664 174 VDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFE 253 (420)
Q Consensus 174 ~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~ 253 (420)
..--. + .-|| .+.. ..+..|||||||||||+
T Consensus 160 ~~~~k-t---------------ll~d-------------------------------~~~~--~~e~~ydFcMcNPPFfe 190 (419)
T KOG2912|consen 160 VEPQK-T---------------LLMD-------------------------------ALKE--ESEIIYDFCMCNPPFFE 190 (419)
T ss_pred ecchh-h---------------cchh-------------------------------hhcc--CccceeeEEecCCchhh
Confidence 85210 0 0011 0100 12456999999999999
Q ss_pred CcccccC---------CCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCce
Q 014664 254 SMEEAGL---------NPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI 324 (420)
Q Consensus 254 s~eea~~---------eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~ 324 (420)
..+|+.. .|..+|+|+.+||+..|||++|+.|||.+|..++++.+|||+|+|||++|+.|++.|++.|++.
T Consensus 191 ~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~eggev~fvnRiitds~~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~k 270 (419)
T KOG2912|consen 191 NQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSEGGEVSFVNRIITDSFVLRKRIRWYTCMLGKKSSLKPLISKLREQGVTK 270 (419)
T ss_pred chhhhccccccCCCCCCcccccccchhHHHhhccHHHHHHHHHHHHHHhhhcceEEeeecccccccHHHHHHHHHcCCce
Confidence 9877642 4677899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeeeEEEEEeecCccccccCCccccccchhhhHH--------hhhhhhhhhHHHHHHHHHHhhcCCccccc
Q 014664 325 VKTTEFVQGQTCRWGLAWSFVPPARKIISPHVAEKKNLSFMLE--------GVQRQFSALDVLQSIETFFSASGASCKLN 396 (420)
Q Consensus 325 v~~~e~~qG~t~Rw~lAWsF~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (420)
|+++|++||+|.||++||||++...+++.|++.+++..| |++ .|+-||++ ++=+.+.+| ...|+-=..+
T Consensus 271 v~itel~qGkTkRW~LaWSF~~~v~~~~~ps~~rps~~s-l~~vf~~Lq~~pl~~e~~~-~i~~ilq~~-~~~~rip~k~ 347 (419)
T KOG2912|consen 271 VKITELVQGKTKRWGLAWSFMPIVRKIIAPSVVRPSVKS-LLEVFYLLQNWPLDPELCA-QIDDILQKF-LDDNRIPSKK 347 (419)
T ss_pred EEEEEeeccccceeeEEeeecccccccCCchhcccchhh-HHHHHHHHhcCCCChHHHH-HHHHHHHHH-HhcCCCCCcC
Confidence 999999999999999999999999999999998888765 333 24457766 444444455 4444433444
Q ss_pred CceeE
Q 014664 397 ASSFT 401 (420)
Q Consensus 397 ~~~~~ 401 (420)
.++-.
T Consensus 348 ~~~l~ 352 (419)
T KOG2912|consen 348 GSVLE 352 (419)
T ss_pred ceEEE
Confidence 44433
No 3
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=100.00 E-value=3.5e-79 Score=610.69 Aligned_cols=285 Identities=40% Similarity=0.739 Sum_probs=252.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhhcCCcE-EEecCCceeCCCCCc
Q 014664 13 RPTIHPKNKYSENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNR 91 (420)
Q Consensus 13 ~~~mHprN~y~~~~~dF~~La~~yP~l~~~v~~~~~g~~~IDf~d~~a~r~Lt~aLL~~ffgl~-~~vp~g~LiPrvP~R 91 (420)
++.|||||+|+ ++|||++|+++||+|++||..+.+|+.+|||+|++||++|||+||++||||+ |+||+|+||||||+|
T Consensus 13 ~~~~h~rn~~~-~~~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R 91 (321)
T PRK11727 13 KPGLHPRNRHR-GRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGR 91 (321)
T ss_pred ccCCCCCCcCC-CCCCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcH
Confidence 56899999999 5899999999999999999999999999999999999999999999999998 799999999999999
Q ss_pred HhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 014664 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (420)
Q Consensus 92 ~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l 171 (420)
++|||||+|||........ ..+...++||||||+||||++|+++.++|+|+|+|||+.|+++|++|++.|+++.++|++
T Consensus 92 ~~Yi~~l~dll~~~~~~~~-p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~ 170 (321)
T PRK11727 92 ADYIHHLADLLAEDNGGVI-PRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRL 170 (321)
T ss_pred HHHHHHHHHHhcccccccC-CCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEE
Confidence 9999999999976421111 123568999999999999999999999999999999999999999999999448889999
Q ss_pred EEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCc
Q 014664 172 RKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF 251 (420)
Q Consensus 172 ~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF 251 (420)
+...... +++.++....++||+|||||||
T Consensus 171 ~~~~~~~---------------------------------------------------~i~~~i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 171 RLQKDSK---------------------------------------------------AIFKGIIHKNERFDATLCNPPF 199 (321)
T ss_pred EEccchh---------------------------------------------------hhhhcccccCCceEEEEeCCCC
Confidence 7653211 2344443346789999999999
Q ss_pred ccCccccc-----------C--C--CCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHH
Q 014664 252 FESMEEAG-----------L--N--PKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISK 316 (420)
Q Consensus 252 ~~s~eea~-----------~--e--P~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~ 316 (420)
|++.+++. . + +.++|+|...||||+|||++||.+||+||..++.+++|||+|+||+++++.|++.
T Consensus 200 ~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~ 279 (321)
T PRK11727 200 HASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRA 279 (321)
T ss_pred cCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHH
Confidence 99987631 1 1 1578899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEEEecCCCeeeEEEEEeecCcccc
Q 014664 317 LRKVGVTIVKTTEFVQGQTCRWGLAWSFVPPARK 350 (420)
Q Consensus 317 L~~~g~~~v~~~e~~qG~t~Rw~lAWsF~~~~~~ 350 (420)
|++.|++.++++||.||++.||+|||||.+..++
T Consensus 280 L~~~~~~~~~~~e~~qG~~~~~~vaWsf~~~~~~ 313 (321)
T PRK11727 280 LKKVGAVEVKTIEMAQGQKQSRFIAWTFLDDEQR 313 (321)
T ss_pred HHHcCCceEEEEEEeCCCeeeEEEEeecCCHHHh
Confidence 9999999999999999999999999999987544
No 4
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=100.00 E-value=3.9e-62 Score=460.25 Aligned_cols=261 Identities=36% Similarity=0.703 Sum_probs=238.0
Q ss_pred CCCcccceeccCCCCccccCCCHHHHHHHHHHHhhhcCCcE-EEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCC
Q 014664 36 YPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLN-WWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNG 114 (420)
Q Consensus 36 yP~l~~~v~~~~~g~~~IDf~d~~a~r~Lt~aLL~~ffgl~-~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~ 114 (420)
.|+|..|+..+++|+.+|||.||.||+.|+||||.+||++. |+||+|.|||+||+|++|||+|+|||.+..-. ..+
T Consensus 1 ~Pel~~f~~~~p~G~~siDFanp~AVk~LnKAlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~---~~~ 77 (292)
T COG3129 1 MPELILFLRLTPAGRQSIDFANPLAVKALNKALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQ---IPG 77 (292)
T ss_pred CcceeeeeeccCCCceeeccCCHHHHHHHHHHHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCC---CCc
Confidence 38999999999999999999999999999999999999997 99999999999999999999999999875321 124
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
+++++||||+|++||||+++.+.++|+++|+|||+.+++.|+.|+..|++++..|+++.+....
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~---------------- 141 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD---------------- 141 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc----------------
Confidence 6789999999999999999999999999999999999999999999998899999999875321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCccccc---------------
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAG--------------- 259 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~--------------- 259 (420)
.||.+++...|.||++||||||++|.+++.
T Consensus 142 -----------------------------------~if~giig~nE~yd~tlCNPPFh~s~~da~~gsqrk~~nl~g~l~ 186 (292)
T COG3129 142 -----------------------------------AIFNGIIGKNERYDATLCNPPFHDSAADARAGSQRKRRNLGGELG 186 (292)
T ss_pred -----------------------------------ccccccccccceeeeEecCCCcchhHHHHHhcccCCccccccccc
Confidence 378888777899999999999999987651
Q ss_pred ---CCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCCCee
Q 014664 260 ---LNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTC 336 (420)
Q Consensus 260 ---~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~ 336 (420)
..|..+++|+..|+||+|||.+||.+|++||..+.+++.|||++|+|.+++..|...|+..|...+.+.|+.||++.
T Consensus 187 ~~~~~~~lnfggq~qelwCegGe~afi~~mv~es~afakqv~WfttLisk~snlp~l~~~l~~~ga~~v~~~emaqgqK~ 266 (292)
T COG3129 187 PTNKLDALNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFTTLISKGSNLPPLYRALTDVGAVKVVKKEMAQGQKQ 266 (292)
T ss_pred ccccchhhhccCCceEEEecCcchhhHHHHHHHHHHHhhheehheeecCCcCCCHHHHHHHHHhcceeeeehhhcccccc
Confidence 12456789999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eEEEEEeecCcccc
Q 014664 337 RWGLAWSFVPPARK 350 (420)
Q Consensus 337 Rw~lAWsF~~~~~~ 350 (420)
...|||||+++.++
T Consensus 267 SrfIaWtf~d~eqr 280 (292)
T COG3129 267 SRFIAWTFMDDEQR 280 (292)
T ss_pred ceeEEEEeeCHHHH
Confidence 78899999988654
No 5
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-31 Score=263.95 Aligned_cols=194 Identities=21% Similarity=0.261 Sum_probs=164.3
Q ss_pred hhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcH
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~ 149 (420)
++|+|++++|.+++|||| |.++..+.++...+.. ... +|||||||||||++.|+.+.+.++|+|+|||+
T Consensus 76 ~~f~gl~~~v~~~vliPr-~dTe~Lve~~l~~~~~---------~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~ 144 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPR-PDTELLVEAALALLLQ---------LDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISP 144 (280)
T ss_pred CeecceeeeeCCCceecC-CchHHHHHHHHHhhhh---------cCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCH
Confidence 469999999999999999 7787777776533322 112 79999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014664 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (420)
Q Consensus 150 ~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (420)
+|+++|++|++.|+ + .++.++.+|.
T Consensus 145 ~Al~~A~~Na~~~~-l-~~~~~~~~dl----------------------------------------------------- 169 (280)
T COG2890 145 DALALARENAERNG-L-VRVLVVQSDL----------------------------------------------------- 169 (280)
T ss_pred HHHHHHHHHHHHcC-C-ccEEEEeeec-----------------------------------------------------
Confidence 99999999999995 7 5666665543
Q ss_pred CccccccCCCCcEEEEEECCCcccCccc------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 014664 230 PVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (420)
Q Consensus 230 ~il~~i~~~~~~FD~imcNPPF~~s~ee------a~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsm 303 (420)
|.++ .++||+|||||||++.... ..++|..++.|+.+ |++++++|+.++..+++.++|+.++
T Consensus 170 --f~~~---~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~d-------Gl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 170 --FEPL---RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGD-------GLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred --cccc---CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCcc-------HHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 3333 2489999999999998611 13689999888888 9999999999999999999999999
Q ss_pred eCCcCcHHHHHHHHHHcC-CceEEEEEecCCCeeeEEEEEe
Q 014664 304 VGRKSNLKFLISKLRKVG-VTIVKTTEFVQGQTCRWGLAWS 343 (420)
Q Consensus 304 vgk~~~l~~l~~~L~~~g-~~~v~~~e~~qG~t~Rw~lAWs 343 (420)
+| ..+.+.+.+++.+.| +..+.+.+|..|+ .|.+++|.
T Consensus 238 ~g-~~q~~~v~~~~~~~~~~~~v~~~~d~~g~-~rv~~~~~ 276 (280)
T COG2890 238 IG-LTQGEAVKALFEDTGFFEIVETLKDLFGR-DRVVLAKL 276 (280)
T ss_pred EC-CCcHHHHHHHHHhcCCceEEEEEecCCCc-eEEEEEEe
Confidence 99 899999999999999 7789999999998 68777764
No 6
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.97 E-value=2.5e-29 Score=265.86 Aligned_cols=204 Identities=19% Similarity=0.220 Sum_probs=169.5
Q ss_pred hhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCC-CCC------------CC--CCCCCCeEEEECCchhHHHHHHH
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNI-IPT------------TS--RNGDKVKGFDIGTGANCIYPLLG 134 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~-~~~------------~~--~~~~~~~vLDIGTGsG~I~~~La 134 (420)
++|||++|.|.++||||| |+|+..|+|+.+.+.... .+. .. ......+|||||||||||++.++
T Consensus 79 ~~F~g~~f~V~~~VLIPR-peTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la 157 (506)
T PRK01544 79 KEFYSREFIVNKHVLIPR-SDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLL 157 (506)
T ss_pred CEEcCcEEEeCCCcccCC-CcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHH
Confidence 569999999999999999 889999999876653100 000 00 01123589999999999999999
Q ss_pred HhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCC
Q 014664 135 ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS 214 (420)
Q Consensus 135 ~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (420)
.+.++++++|+|+|+.|+++|++|++.++ +.++|.++.+|...
T Consensus 158 ~~~p~~~v~avDis~~al~~A~~N~~~~~-l~~~v~~~~~D~~~------------------------------------ 200 (506)
T PRK01544 158 CELPNANVIATDISLDAIEVAKSNAIKYE-VTDRIQIIHSNWFE------------------------------------ 200 (506)
T ss_pred HHCCCCeEEEEECCHHHHHHHHHHHHHcC-Cccceeeeecchhh------------------------------------
Confidence 88889999999999999999999999985 77889998876321
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHH
Q 014664 215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRII 287 (420)
Q Consensus 215 ~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea-------~~eP~~a~~G~~~Em~~~GGel~Fv~riI 287 (420)
.+ ..++||+|||||||++..+.. .++|..|+.|+.+ ++.|+++++
T Consensus 201 -------------------~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~d-------Gl~~~~~il 252 (506)
T PRK01544 201 -------------------NI--EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEED-------GLQAYFIIA 252 (506)
T ss_pred -------------------hC--cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCcc-------HHHHHHHHH
Confidence 11 135799999999999876532 3689999999988 999999999
Q ss_pred HHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCCCeeeEEEE
Q 014664 288 EDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLA 341 (420)
Q Consensus 288 ~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~lA 341 (420)
+++..+++++|++..++| .++.+.+.+.+.+.|+..+.+.+|++|+ .|.+++
T Consensus 253 ~~a~~~L~~gG~l~lEig-~~q~~~v~~~~~~~g~~~~~~~~D~~g~-~R~v~~ 304 (506)
T PRK01544 253 ENAKQFLKPNGKIILEIG-FKQEEAVTQIFLDHGYNIESVYKDLQGH-SRVILI 304 (506)
T ss_pred HHHHHhccCCCEEEEEEC-CchHHHHHHHHHhcCCCceEEEecCCCC-ceEEEe
Confidence 999999999999999999 8899999999999999999999999999 687654
No 7
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.97 E-value=7.7e-29 Score=243.99 Aligned_cols=197 Identities=22% Similarity=0.307 Sum_probs=166.5
Q ss_pred hhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcH
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~ 149 (420)
++|||++|.|++++|||| |+++.++.++.+.+... ....++||+|||+|||++.++...++++++|+|+|+
T Consensus 78 ~~f~g~~f~v~~~vliPr-~ete~lv~~~l~~~~~~--------~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~ 148 (284)
T TIGR00536 78 KEFYGLEFFVNEHVLIPR-PETEELVEKALASLISQ--------NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISP 148 (284)
T ss_pred ceEcCeEEEECCCCcCCC-CccHHHHHHHHHHhhhc--------CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH
Confidence 579999999999999999 78888887765544211 112589999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014664 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (420)
Q Consensus 150 ~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (420)
+|+++|++|++.++ +.++++++.+|...
T Consensus 149 ~al~~a~~n~~~~~-~~~~v~~~~~d~~~--------------------------------------------------- 176 (284)
T TIGR00536 149 DALAVAEENAEKNQ-LEHRVEFIQSNLFE--------------------------------------------------- 176 (284)
T ss_pred HHHHHHHHHHHHcC-CCCcEEEEECchhc---------------------------------------------------
Confidence 99999999999985 77779999887421
Q ss_pred CccccccCCCCcEEEEEECCCcccCccc------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 014664 230 PVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (420)
Q Consensus 230 ~il~~i~~~~~~FD~imcNPPF~~s~ee------a~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsm 303 (420)
.+ ...+||+|||||||++..+. ..++|..++.|+.+ ++.++++++.++..+++++||+.++
T Consensus 177 ----~~--~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~d-------gl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 177 ----PL--AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDD-------GLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred ----cC--cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCc-------HHHHHHHHHHHHHHhccCCCEEEEE
Confidence 11 12379999999999987642 13689999999888 8999999999999999999999999
Q ss_pred eCCcCcHHHHHHHHH-HcCCceEEEEEecCCCeeeEEEEE
Q 014664 304 VGRKSNLKFLISKLR-KVGVTIVKTTEFVQGQTCRWGLAW 342 (420)
Q Consensus 304 vgk~~~l~~l~~~L~-~~g~~~v~~~e~~qG~t~Rw~lAW 342 (420)
+| ..|...+.+++. +.|+..+.+.+|++|+ .|+++++
T Consensus 244 ~g-~~q~~~~~~~~~~~~~~~~~~~~~D~~g~-~R~~~~~ 281 (284)
T TIGR00536 244 IG-NWQQKSLKELLRIKFTWYDVENGRDLNGK-ERVVLGF 281 (284)
T ss_pred EC-ccHHHHHHHHHHhcCCCceeEEecCCCCC-ceEEEEE
Confidence 99 789999999988 4688899999999999 7988875
No 8
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.96 E-value=1e-28 Score=254.11 Aligned_cols=194 Identities=17% Similarity=0.175 Sum_probs=163.6
Q ss_pred hhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcH
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~ 149 (420)
++|||++|.|++++|||| |+++.++.++.+.+. ...++||||||+|||++.++.+.++++++|+|+|+
T Consensus 218 ~~F~G~~f~V~p~vLIPR-peTE~LVe~aL~~l~-----------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~ 285 (423)
T PRK14966 218 REFYGRRFAVNPNVLIPR-PETEHLVEAVLARLP-----------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP 285 (423)
T ss_pred eeecCcEEEeCCCccCCC-ccHHHHHHHhhhccC-----------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH
Confidence 459999999999999999 777777666654332 12489999999999999998888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014664 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (420)
Q Consensus 150 ~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (420)
+|++.|++|++.++ . +|+++++|..+.
T Consensus 286 ~ALe~AreNa~~~g-~--rV~fi~gDl~e~-------------------------------------------------- 312 (423)
T PRK14966 286 PALETARKNAADLG-A--RVEFAHGSWFDT-------------------------------------------------- 312 (423)
T ss_pred HHHHHHHHHHHHcC-C--cEEEEEcchhcc--------------------------------------------------
Confidence 99999999999874 3 799988874310
Q ss_pred CccccccCCCCcEEEEEECCCcccCcccc------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 014664 230 PVLVGVVRDGEQFDFCICNPPFFESMEEA------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (420)
Q Consensus 230 ~il~~i~~~~~~FD~imcNPPF~~s~eea------~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsm 303 (420)
.+ ...++||+|+|||||+++.+.. .+||..++.|+++ +++|+++|++++..+++++||+..+
T Consensus 313 -~l----~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~d-------GL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 313 -DM----PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSD-------GLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred -cc----ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCc-------hHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 00 0124799999999999875432 3689999999988 9999999999999999999999999
Q ss_pred eCCcCcHHHHHHHHHHcCCceEEEEEecCCCeeeEEEEE
Q 014664 304 VGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (420)
Q Consensus 304 vgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~lAW 342 (420)
+| .+|.+.+.+.+++.|+..+++.+|++|+ .|.+++.
T Consensus 381 iG-~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~-dR~v~~~ 417 (423)
T PRK14966 381 HG-FDQGAAVRGVLAENGFSGVETLPDLAGL-DRVTLGK 417 (423)
T ss_pred EC-ccHHHHHHHHHHHCCCcEEEEEEcCCCC-cEEEEEE
Confidence 99 7999999999999999999999999999 6888875
No 9
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.94 E-value=2.6e-26 Score=222.25 Aligned_cols=204 Identities=17% Similarity=0.178 Sum_probs=160.1
Q ss_pred hcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHH
Q 014664 71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (420)
Q Consensus 71 ~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~ 150 (420)
+|-++++.+-+|||||| |+|++.+.|+.|.+....- .+...+||+|||||||++.+++.++..+|+|+|+|+.
T Consensus 111 ~F~~l~l~~~pgVlIPR-pETEE~V~~Vid~~~~~~~------~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~ 183 (328)
T KOG2904|consen 111 PFGDLDLVCKPGVLIPR-PETEEWVEAVIDALNNSEH------SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA 183 (328)
T ss_pred ccCCceEEecCCeeecC-ccHHHHHHHHHHHHhhhhh------cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHH
Confidence 47788999999999999 8999999999999975311 1234799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014664 151 ALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPP 230 (420)
Q Consensus 151 AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (420)
|+.+|.+|++++. +.++|.+++-+....
T Consensus 184 Ai~La~eN~qr~~-l~g~i~v~~~~me~d--------------------------------------------------- 211 (328)
T KOG2904|consen 184 AIKLAKENAQRLK-LSGRIEVIHNIMESD--------------------------------------------------- 211 (328)
T ss_pred HHHHHHHHHHHHh-hcCceEEEecccccc---------------------------------------------------
Confidence 9999999999995 999999987643210
Q ss_pred ccccccCCCCcEEEEEECCCcccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE
Q 014664 231 VLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM 303 (420)
Q Consensus 231 il~~i~~~~~~FD~imcNPPF~~s~eea-------~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsm 303 (420)
.+..-....+++|+++|||||+.+.+.. .+||+.|+.|+.+ +..++..+..-+.+.+.++|.+..+
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~e-------G~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLE-------GYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccc-------hhHHHHHHHHhhHhhcccCCeEEEE
Confidence 0000001246899999999999987743 2799999999998 9999999999999999999988888
Q ss_pred eCCcCcHHHHHH----HHHHcCCceEEEEEecCCCeeeEEEE
Q 014664 304 VGRKSNLKFLIS----KLRKVGVTIVKTTEFVQGQTCRWGLA 341 (420)
Q Consensus 304 vgk~~~l~~l~~----~L~~~g~~~v~~~e~~qG~t~Rw~lA 341 (420)
++-...-..+++ .+.+--...+++..|..|+ .|+++.
T Consensus 285 ~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~-~Rfv~i 325 (328)
T KOG2904|consen 285 LVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGR-PRFVII 325 (328)
T ss_pred ecccccCcHHHHHHHHhchhhccchhheeecccCC-cceEEE
Confidence 873333333333 2233334567888888888 577653
No 10
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.94 E-value=3.4e-25 Score=214.60 Aligned_cols=195 Identities=23% Similarity=0.339 Sum_probs=164.4
Q ss_pred hhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcH
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~ 149 (420)
.+|||+++.+.+++|+|| |+++.++.|+.+.+.. ....++||+|||+|+++..++...+.++++|+|+|+
T Consensus 73 ~~f~~~~~~~~~~~lipr-~~te~l~~~~~~~~~~---------~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~ 142 (275)
T PRK09328 73 AEFWGLDFKVSPGVLIPR-PETEELVEWALEALLL---------KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP 142 (275)
T ss_pred ceEcCcEEEECCCceeCC-CCcHHHHHHHHHhccc---------cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH
Confidence 569999999999999999 7888888888754432 134689999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014664 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (420)
Q Consensus 150 ~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (420)
.+++.|++|++ +. ...++.++.+|...
T Consensus 143 ~~l~~a~~n~~-~~-~~~~i~~~~~d~~~--------------------------------------------------- 169 (275)
T PRK09328 143 EALAVARRNAK-HG-LGARVEFLQGDWFE--------------------------------------------------- 169 (275)
T ss_pred HHHHHHHHHHH-hC-CCCcEEEEEccccC---------------------------------------------------
Confidence 99999999998 32 45678998876421
Q ss_pred CccccccCCCCcEEEEEECCCcccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 014664 230 PVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (420)
Q Consensus 230 ~il~~i~~~~~~FD~imcNPPF~~s~eea-------~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~ts 302 (420)
.+ ..++||+|+|||||++..+.. .++|..++.++.+ ++.++.++++++..+++++|++.+
T Consensus 170 ----~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~-------g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 170 ----PL--PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGED-------GLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred ----cC--CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCC-------HHHHHHHHHHHHHHhcccCCEEEE
Confidence 11 135899999999999865421 3689999998888 899999999999999999999999
Q ss_pred EeCCcCcHHHHHHHHHHcCCceEEEEEecCCCeeeEEEEE
Q 014664 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (420)
Q Consensus 303 mvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~lAW 342 (420)
++| ..+.+.+.+.|.+.|+..+.+..|..|+ .|+++++
T Consensus 237 e~g-~~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~~~~ 274 (275)
T PRK09328 237 EIG-YDQGEAVRALLAAAGFADVETRKDLAGR-DRVVLGR 274 (275)
T ss_pred EEC-chHHHHHHHHHHhCCCceeEEecCCCCC-ceEEEEE
Confidence 998 7788999999999999999999999998 7888874
No 11
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.93 E-value=4.5e-25 Score=217.80 Aligned_cols=177 Identities=19% Similarity=0.254 Sum_probs=146.0
Q ss_pred hhcCCcEEEecCCceeCCCCCcHhHHHHHHH-HHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCc
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~d-ll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs 148 (420)
++|+|++|.|++++|||| |.++..+.+... .+.. ....+|||+|||+|+|+..++.+.++++++|+|+|
T Consensus 85 ~~f~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis 154 (284)
T TIGR03533 85 AWFAGLEFYVDERVLIPR-SPIAELIEDGFAPWLEP---------EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS 154 (284)
T ss_pred CeecCcEEEECCCCccCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC
Confidence 468999999999999999 677777776543 2211 12358999999999999999988888999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014664 149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228 (420)
Q Consensus 149 ~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (420)
+.|++.|++|++.++ +.++|+++.+|...
T Consensus 155 ~~al~~A~~n~~~~~-~~~~i~~~~~D~~~-------------------------------------------------- 183 (284)
T TIGR03533 155 PDALAVAEINIERHG-LEDRVTLIQSDLFA-------------------------------------------------- 183 (284)
T ss_pred HHHHHHHHHHHHHcC-CCCcEEEEECchhh--------------------------------------------------
Confidence 999999999999985 77789999887421
Q ss_pred CCccccccCCCCcEEEEEECCCcccCcccc------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 014664 229 PPVLVGVVRDGEQFDFCICNPPFFESMEEA------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (420)
Q Consensus 229 ~~il~~i~~~~~~FD~imcNPPF~~s~eea------~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~ts 302 (420)
.+ ++++||+|+|||||++..+.. .++|..++.|+.+ ++.++++++.++..+++++|++.+
T Consensus 184 -----~~--~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~d-------Gl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 184 -----AL--PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGED-------GLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred -----cc--CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCc-------HHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 134799999999999865421 3578889888888 999999999999999999999999
Q ss_pred EeCCcCcHHHHHHHHHHcCCc
Q 014664 303 MVGRKSNLKFLISKLRKVGVT 323 (420)
Q Consensus 303 mvgk~~~l~~l~~~L~~~g~~ 323 (420)
++| ..+ +.+.+.+.+.|+.
T Consensus 250 e~g-~~~-~~v~~~~~~~~~~ 268 (284)
T TIGR03533 250 EVG-NSM-EALEEAYPDVPFT 268 (284)
T ss_pred EEC-cCH-HHHHHHHHhCCCc
Confidence 999 455 7899999988864
No 12
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.93 E-value=3.3e-24 Score=214.02 Aligned_cols=178 Identities=18% Similarity=0.244 Sum_probs=143.7
Q ss_pred hhcCCcEEEecCCceeCCCCCcHhHHHHHHH-HHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCc
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIED-LLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~d-ll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs 148 (420)
++|||++|.|++++|||| |.++..+.++.. .+.. ....++||+|||+|++++.++.+.++++++|+|+|
T Consensus 97 ~~F~g~~f~v~~~vlipr-~~te~lv~~~l~~~~~~---------~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis 166 (307)
T PRK11805 97 AWFCGLEFYVDERVLVPR-SPIAELIEDGFAPWLED---------PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDIS 166 (307)
T ss_pred ceEcCcEEEECCCCcCCC-CchHHHHHHHHHHHhcc---------CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCC
Confidence 569999999999999999 667777766543 2221 11258999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014664 149 DVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHG 228 (420)
Q Consensus 149 ~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (420)
+.|++.|++|++.++ +.++|+++.+|...
T Consensus 167 ~~al~~A~~n~~~~~-l~~~i~~~~~D~~~-------------------------------------------------- 195 (307)
T PRK11805 167 PDALAVAEINIERHG-LEDRVTLIESDLFA-------------------------------------------------- 195 (307)
T ss_pred HHHHHHHHHHHHHhC-CCCcEEEEECchhh--------------------------------------------------
Confidence 999999999999985 77789999887421
Q ss_pred CCccccccCCCCcEEEEEECCCcccCccc------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 014664 229 PPVLVGVVRDGEQFDFCICNPPFFESMEE------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (420)
Q Consensus 229 ~~il~~i~~~~~~FD~imcNPPF~~s~ee------a~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~ts 302 (420)
.+ +.++||+|||||||+...+. ..++|..++.|+.+ ++.+++++++++..+++++|++.+
T Consensus 196 -----~l--~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d-------Gl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 196 -----AL--PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD-------GLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred -----hC--CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc-------hHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 12479999999999986442 13689999988888 899999999999999999999999
Q ss_pred EeCCcCcHHHHHHHHHHcCCce
Q 014664 303 MVGRKSNLKFLISKLRKVGVTI 324 (420)
Q Consensus 303 mvgk~~~l~~l~~~L~~~g~~~ 324 (420)
++|. .+ ..+.+.+.+.++..
T Consensus 262 E~g~-~~-~~~~~~~~~~~~~~ 281 (307)
T PRK11805 262 EVGN-SR-VHLEEAYPDVPFTW 281 (307)
T ss_pred EECc-CH-HHHHHHHhhCCCEE
Confidence 9994 44 45888888776543
No 13
>PLN02672 methionine S-methyltransferase
Probab=99.92 E-value=1.5e-24 Score=243.86 Aligned_cols=185 Identities=14% Similarity=0.090 Sum_probs=146.5
Q ss_pred hhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcH
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~ 149 (420)
++|||+++.|.+++|||| |+++..++++... +.. .-+..+|||||||||||++.|+.+.+..+++|+|||+
T Consensus 82 ~~F~~l~~~V~p~VLIPR-peTE~lve~L~~~------~~~--~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~ 152 (1082)
T PLN02672 82 RNRKKLTMMEIPSIFIPE-DWSFTFYEGLNRH------PDS--IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP 152 (1082)
T ss_pred EEecCCceeeCCCcccCc-hhHHHHHHHHHhc------ccc--cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH
Confidence 479999999999999999 8888887774321 110 0123489999999999999999888888999999999
Q ss_pred HHHHHHHHHHHHCCCC---------------CCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCC
Q 014664 150 VALEWAEKNVKSNPHI---------------SELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSS 214 (420)
Q Consensus 150 ~AL~~A~~N~~~N~~l---------------~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (420)
+|+++|++|++.|+ + .++|+++.+|..+
T Consensus 153 ~Al~~A~~Na~~n~-l~~~~~~~~~~~~~~l~~rV~f~~sDl~~------------------------------------ 195 (1082)
T PLN02672 153 RAVKVAWINLYLNA-LDDDGLPVYDGEGKTLLDRVEFYESDLLG------------------------------------ 195 (1082)
T ss_pred HHHHHHHHHHHHcC-cccccccccccccccccccEEEEECchhh------------------------------------
Confidence 99999999999873 3 2578888887532
Q ss_pred CCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccc-------cCC---------CCcccCC---CCCcccc
Q 014664 215 SFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLN---------PKTSCGG---TPEEMVC 275 (420)
Q Consensus 215 ~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea-------~~e---------P~~a~~G---~~~Em~~ 275 (420)
.+.....+||+|||||||++..+.. .++ |..++.| +.+
T Consensus 196 -------------------~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d---- 252 (1082)
T PLN02672 196 -------------------YCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF---- 252 (1082)
T ss_pred -------------------hccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc----
Confidence 1101123699999999999876532 133 4677766 466
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHH-HHHHHcCCceEEE
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLI-SKLRKVGVTIVKT 327 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~-~~L~~~g~~~v~~ 327 (420)
|+.||++|+.++..+++++||+.+++| ..|.+.+. +++++.|+..+++
T Consensus 253 ---GL~~yr~i~~~a~~~L~pgG~l~lEiG-~~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 253 ---GLGLIARAVEEGISVIKPMGIMIFNMG-GRPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred ---HHHHHHHHHHHHHHhccCCCEEEEEEC-ccHHHHHHHHHHHHCCCCeeEE
Confidence 999999999999999999999999999 99999999 6999999765443
No 14
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.91 E-value=1.5e-23 Score=203.51 Aligned_cols=186 Identities=14% Similarity=0.178 Sum_probs=147.0
Q ss_pred hhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcH
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~ 149 (420)
++|+|++|.+++++++|| |.++.++.++.+.+... ....++||+|||+|++++.++...++.+++|+|+|+
T Consensus 50 ~~f~g~~~~v~~~vf~pr-~~Te~Lv~~~l~~~~~~--------~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~ 120 (251)
T TIGR03704 50 AEFCGLRIAVDPGVFVPR-RRTEFLVDEAAALARPR--------SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP 120 (251)
T ss_pred CeEcCeEEEECCCCcCCC-ccHHHHHHHHHHhhccc--------CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH
Confidence 569999999999999999 56777777776654321 123589999999999999998888888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014664 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (420)
Q Consensus 150 ~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (420)
.|++.|++|++.|+ ++++.+|..+
T Consensus 121 ~al~~A~~N~~~~~-----~~~~~~D~~~--------------------------------------------------- 144 (251)
T TIGR03704 121 AAVRCARRNLADAG-----GTVHEGDLYD--------------------------------------------------- 144 (251)
T ss_pred HHHHHHHHHHHHcC-----CEEEEeechh---------------------------------------------------
Confidence 99999999999874 3567666421
Q ss_pred CccccccCCCCcEEEEEECCCcccCccc-------ccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 014664 230 PVLVGVVRDGEQFDFCICNPPFFESMEE-------AGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (420)
Q Consensus 230 ~il~~i~~~~~~FD~imcNPPF~~s~ee-------a~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~ts 302 (420)
.+... ..++||+|+|||||++..+. ..++|..++.|+.+ ++.++++|++.+..+++++||+..
T Consensus 145 -~l~~~--~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~d-------gl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 145 -ALPTA--LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGAD-------GLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred -hcchh--cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCc-------HHHHHHHHHHHHHHhcCCCCEEEE
Confidence 00000 02469999999999976432 13678888888888 999999999999999999999988
Q ss_pred EeCCcCcHHHHHHHHHHcCCc-eEEEEEec
Q 014664 303 MVGRKSNLKFLISKLRKVGVT-IVKTTEFV 331 (420)
Q Consensus 303 mvgk~~~l~~l~~~L~~~g~~-~v~~~e~~ 331 (420)
+++ .++...+...|++.|+. .+...+|+
T Consensus 215 ~~~-~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 215 ETS-ERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred EEC-cchHHHHHHHHHHCCCCceeeEcccc
Confidence 888 78999999999999874 33444443
No 15
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.91 E-value=5.8e-23 Score=195.71 Aligned_cols=191 Identities=21% Similarity=0.287 Sum_probs=159.4
Q ss_pred hhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcH
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~ 149 (420)
.+|||..+.+++++++|+ |.+..++.++.+.+.. ...+|||+|||+|+++..++...++++++|+|+++
T Consensus 53 ~~~~~~~~~~~~~~~~p~-~~~~~l~~~~l~~~~~----------~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~ 121 (251)
T TIGR03534 53 REFYGLDFKVSPGVLIPR-PDTEELVEAALERLKK----------GPLRVLDLGTGSGAIALALAKERPDARVTAVDISP 121 (251)
T ss_pred ceEeceEEEECCCcccCC-CChHHHHHHHHHhccc----------CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH
Confidence 468999999999999999 6788888877766531 23589999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014664 150 VALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGP 229 (420)
Q Consensus 150 ~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (420)
.+++.|++|++.++ +. +++++.+|...
T Consensus 122 ~~~~~a~~~~~~~~-~~-~~~~~~~d~~~--------------------------------------------------- 148 (251)
T TIGR03534 122 EALAVARKNAARLG-LD-NVTFLQSDWFE--------------------------------------------------- 148 (251)
T ss_pred HHHHHHHHHHHHcC-CC-eEEEEECchhc---------------------------------------------------
Confidence 99999999999885 64 68888776421
Q ss_pred CccccccCCCCcEEEEEECCCcccCcccc-------cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEE
Q 014664 230 PVLVGVVRDGEQFDFCICNPPFFESMEEA-------GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTS 302 (420)
Q Consensus 230 ~il~~i~~~~~~FD~imcNPPF~~s~eea-------~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~ts 302 (420)
.. ..++||+|+|||||+...+.. .++|..++.++.+ ++.++..+++++..+++++|++..
T Consensus 149 ----~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~-------~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 149 ----PL--PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGED-------GLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred ----cC--cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCc-------HHHHHHHHHHHHHHhcccCCEEEE
Confidence 00 236899999999999754321 2478888877776 899999999999999999999999
Q ss_pred EeCCcCcHHHHHHHHHHcCCceEEEEEecCCCeeeEE
Q 014664 303 MVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWG 339 (420)
Q Consensus 303 mvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~ 339 (420)
++| ..+.+.+.+.|++.|+..+.+..+..|+ .|++
T Consensus 216 ~~~-~~~~~~~~~~l~~~gf~~v~~~~d~~~~-~r~~ 250 (251)
T TIGR03534 216 EIG-YDQGEAVRALFEAAGFADVETRKDLAGK-DRVV 250 (251)
T ss_pred EEC-ccHHHHHHHHHHhCCCCceEEEeCCCCC-cCee
Confidence 998 7888999999999999999999998888 5765
No 16
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.86 E-value=3.5e-21 Score=186.32 Aligned_cols=175 Identities=25% Similarity=0.311 Sum_probs=132.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..+|||||||+|+++++|+.+.++++++|+||++++.+.|++|++.|+ ++++|+++++|..+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~-l~~ri~v~~~Di~~----------------- 106 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP-LEERIQVIEADIKE----------------- 106 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc-chhceeEehhhHHH-----------------
Confidence 579999999999999999998888999999999999999999999995 99999999998643
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
+.... ...+||+||||||||..... .+|.....-+.+|..+
T Consensus 107 -----------------------------------~~~~~--~~~~fD~Ii~NPPyf~~~~~--~~~~~~~~~Ar~e~~~ 147 (248)
T COG4123 107 -----------------------------------FLKAL--VFASFDLIICNPPYFKQGSR--LNENPLRAIARHEITL 147 (248)
T ss_pred -----------------------------------hhhcc--cccccCEEEeCCCCCCCccc--cCcChhhhhhhhhhcC
Confidence 11111 12479999999999998765 2333333334554444
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCCCe----eeEEEEEeecCccccc
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT----CRWGLAWSFVPPARKI 351 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t----~Rw~lAWsF~~~~~~~ 351 (420)
. ...+++-+..+++++|.+ +||.+..++.+++..|++.++. .+.+.|++.+. .|-++.-.........
T Consensus 148 ~------le~~i~~a~~~lk~~G~l-~~V~r~erl~ei~~~l~~~~~~-~k~i~~V~p~~~k~A~~vLv~~~k~~~~~l~ 219 (248)
T COG4123 148 D------LEDLIRAAAKLLKPGGRL-AFVHRPERLAEIIELLKSYNLE-PKRIQFVYPKIGKAANRVLVEAIKGGKSGLK 219 (248)
T ss_pred C------HHHHHHHHHHHccCCCEE-EEEecHHHHHHHHHHHHhcCCC-ceEEEEecCCCCCcceEEEEEEecCCCCCce
Confidence 3 566777888888888866 7999999999999999999985 66677777653 4555555555444344
Q ss_pred cCCc
Q 014664 352 ISPH 355 (420)
Q Consensus 352 ~~~~ 355 (420)
+.|+
T Consensus 220 ~~pp 223 (248)
T COG4123 220 VLPP 223 (248)
T ss_pred ecCC
Confidence 4444
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.80 E-value=2.1e-18 Score=157.67 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=114.6
Q ss_pred cEEEecCCceeCCCCCcHhHHH-HHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHH
Q 014664 75 LNWWIPDGQLCPTVPNRSNYIH-WIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE 153 (420)
Q Consensus 75 l~~~vp~g~LiPrvP~R~nyi~-wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~ 153 (420)
++|..++|+.-|+ +.++-. .+.+.+... ...++||||||+|+|++.++.+.+.++++++|+|+.|++
T Consensus 2 ~~~~~~~gvFs~~---~~d~~t~lL~~~l~~~---------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~ 69 (170)
T PF05175_consen 2 LEFITHPGVFSPP---RLDAGTRLLLDNLPKH---------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALE 69 (170)
T ss_dssp EEEEEETTSTTTT---SHHHHHHHHHHHHHHH---------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHH
T ss_pred EEEEECCCeeCCC---CCCHHHHHHHHHHhhc---------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence 5788999999865 332211 233333321 245899999999999999998888889999999999999
Q ss_pred HHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 014664 154 WAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLV 233 (420)
Q Consensus 154 ~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 233 (420)
.|++|++.|+ +++ ++++..|...
T Consensus 70 ~a~~n~~~n~-~~~-v~~~~~d~~~------------------------------------------------------- 92 (170)
T PF05175_consen 70 LAKRNAERNG-LEN-VEVVQSDLFE------------------------------------------------------- 92 (170)
T ss_dssp HHHHHHHHTT-CTT-EEEEESSTTT-------------------------------------------------------
T ss_pred HHHHHHHhcC-ccc-cccccccccc-------------------------------------------------------
Confidence 9999999995 776 9999887431
Q ss_pred cccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHH
Q 014664 234 GVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFL 313 (420)
Q Consensus 234 ~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l 313 (420)
.+ ..++||+|+|||||... ... +..++.++++++..+++++|.+...+.+....+.+
T Consensus 93 ~~--~~~~fD~Iv~NPP~~~~--------------~~~-------~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~ 149 (170)
T PF05175_consen 93 AL--PDGKFDLIVSNPPFHAG--------------GDD-------GLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL 149 (170)
T ss_dssp TC--CTTCEEEEEE---SBTT--------------SHC-------HHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH
T ss_pred cc--cccceeEEEEccchhcc--------------ccc-------chhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH
Confidence 11 14689999999996532 122 67899999999999999999987777666666666
Q ss_pred HHHHHHcCCceEEEEEec
Q 014664 314 ISKLRKVGVTIVKTTEFV 331 (420)
Q Consensus 314 ~~~L~~~g~~~v~~~e~~ 331 (420)
++.+ +..+++++..
T Consensus 150 l~~~----f~~~~~~~~~ 163 (170)
T PF05175_consen 150 LKEL----FGDVEVVAKN 163 (170)
T ss_dssp HHHH----HS--EEEEEE
T ss_pred HHHh----cCCEEEEEEC
Confidence 3322 3356665543
No 18
>PRK14967 putative methyltransferase; Provisional
Probab=99.71 E-value=7.5e-16 Score=146.39 Aligned_cols=172 Identities=18% Similarity=0.236 Sum_probs=125.1
Q ss_pred CCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHH
Q 014664 73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (420)
Q Consensus 73 fgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL 152 (420)
=|+.+.+++++..|. +.+.....++..+ . + ....++||+|||+|.++..++.. ...+++|+|+|+.++
T Consensus 5 ~~~~~~~~~g~~~p~-~ds~~l~~~l~~~-~---~------~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l 72 (223)
T PRK14967 5 PPDALLRAPGVYRPQ-EDTQLLADALAAE-G---L------GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAV 72 (223)
T ss_pred CCceeecCCCCcCCC-CcHHHHHHHHHhc-c---c------CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHH
Confidence 367899999999999 3443333333211 1 1 12358999999999987776653 335899999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 014664 153 EWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVL 232 (420)
Q Consensus 153 ~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 232 (420)
+.|++|++.++ + +++++..|...
T Consensus 73 ~~a~~n~~~~~-~--~~~~~~~d~~~------------------------------------------------------ 95 (223)
T PRK14967 73 RSARLNALLAG-V--DVDVRRGDWAR------------------------------------------------------ 95 (223)
T ss_pred HHHHHHHHHhC-C--eeEEEECchhh------------------------------------------------------
Confidence 99999999874 4 47777665321
Q ss_pred ccccCCCCcEEEEEECCCcccCcccc--cCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcH
Q 014664 233 VGVVRDGEQFDFCICNPPFFESMEEA--GLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNL 310 (420)
Q Consensus 233 ~~i~~~~~~FD~imcNPPF~~s~eea--~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l 310 (420)
.+ ..+.||+|+|||||+...+.. ...|..++.++.+ +..++.++++++..+++++|.+........+.
T Consensus 96 -~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~ 165 (223)
T PRK14967 96 -AV--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPD-------GRAVLDRLCDAAPALLAPGGSLLLVQSELSGV 165 (223)
T ss_pred -hc--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCc-------HHHHHHHHHHHHHHhcCCCcEEEEEEecccCH
Confidence 01 235799999999999765432 2345556666665 67888999999999999999876655655688
Q ss_pred HHHHHHHHHcCCc
Q 014664 311 KFLISKLRKVGVT 323 (420)
Q Consensus 311 ~~l~~~L~~~g~~ 323 (420)
..++..+++.|+.
T Consensus 166 ~~~~~~l~~~g~~ 178 (223)
T PRK14967 166 ERTLTRLSEAGLD 178 (223)
T ss_pred HHHHHHHHHCCCC
Confidence 8999999998875
No 19
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.64 E-value=1.3e-14 Score=132.95 Aligned_cols=142 Identities=16% Similarity=0.214 Sum_probs=105.3
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (420)
.++||+|||+|.+...++... .+++|+|+|+++++.|++|++.++ + .++++..|...
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~--~~~~~~~d~~~------------------ 77 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNN-V--GLDVVMTDLFK------------------ 77 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEccccc------------------
Confidence 479999999999887776543 389999999999999999999884 4 47777665321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCC--CCcccCCCCCccc
Q 014664 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLN--PKTSCGGTPEEMV 274 (420)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~e--P~~a~~G~~~Em~ 274 (420)
. ..++||+|+|||||++........ ...++.|+.+
T Consensus 78 -------------------------------------~---~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~--- 114 (179)
T TIGR00537 78 -------------------------------------G---VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKD--- 114 (179)
T ss_pred -------------------------------------c---cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCc---
Confidence 0 124799999999998764432111 1223334443
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEE
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTE 329 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e 329 (420)
+...+.+++++..++++++|++........+...+.+.|++.|+. +++..
T Consensus 115 ----~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~-~~~~~ 164 (179)
T TIGR00537 115 ----GRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFR-YEIVA 164 (179)
T ss_pred ----hHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCe-EEEEE
Confidence 456688899999999999998877766667799999999999985 44443
No 20
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.9e-14 Score=142.56 Aligned_cols=128 Identities=21% Similarity=0.206 Sum_probs=94.6
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (420)
.+|||+|||.|.|++.|+...|..+++.+|+|..|++.|++|++.|+ ++.. +++.++.
T Consensus 160 ~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~-~v~~s~~-------------------- 217 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-VENT-EVWASNL-------------------- 217 (300)
T ss_pred CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-CCcc-EEEEecc--------------------
Confidence 48999999999999999999999999999999999999999999995 6654 5555543
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccccc
Q 014664 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (420)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~ 276 (420)
+.++ .++||+|+|||||+...+.
T Consensus 218 -----------------------------------~~~v---~~kfd~IisNPPfh~G~~v------------------- 240 (300)
T COG2813 218 -----------------------------------YEPV---EGKFDLIISNPPFHAGKAV------------------- 240 (300)
T ss_pred -----------------------------------cccc---cccccEEEeCCCccCCcch-------------------
Confidence 2222 2489999999999864321
Q ss_pred CchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEE
Q 014664 277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTE 329 (420)
Q Consensus 277 GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e 329 (420)
......+||+++..+++.+|-.. +|.. .......+|++. |.++.++.
T Consensus 241 --~~~~~~~~i~~A~~~L~~gGeL~-iVan--~~l~y~~~L~~~-Fg~v~~la 287 (300)
T COG2813 241 --VHSLAQEIIAAAARHLKPGGELW-IVAN--RHLPYEKKLKEL-FGNVEVLA 287 (300)
T ss_pred --hHHHHHHHHHHHHHhhccCCEEE-EEEc--CCCChHHHHHHh-cCCEEEEE
Confidence 23456689999999999998764 4442 233334444443 34455554
No 21
>PRK14968 putative methyltransferase; Provisional
Probab=99.60 E-value=9.6e-14 Score=126.33 Aligned_cols=145 Identities=22% Similarity=0.325 Sum_probs=107.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~r-I~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..++||+|||+|.++..++.+ +.+++|+|+|+++++.|++|+..++ +.++ +.++..|..+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~~d~~~---------------- 84 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNN-IRNNGVEVIRSDLFE---------------- 84 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcC-CCCcceEEEeccccc----------------
Confidence 358999999999998888765 7899999999999999999999885 6544 7777665321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCC--CcccCCCCCc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNP--KTSCGGTPEE 272 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP--~~a~~G~~~E 272 (420)
.+ ....||+|++||||+........++ ..++.++..
T Consensus 85 ---------------------------------------~~--~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~- 122 (188)
T PRK14968 85 ---------------------------------------PF--RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKD- 122 (188)
T ss_pred ---------------------------------------cc--cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcC-
Confidence 11 1237999999999987542211111 112222222
Q ss_pred ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEE
Q 014664 273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKT 327 (420)
Q Consensus 273 m~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~ 327 (420)
+...+..+++++..+++.+|++...++-....+.+.+.+.+.|+....+
T Consensus 123 ------~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 123 ------GREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred ------hHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeee
Confidence 4667888999999999999998888876677899999999999865544
No 22
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.59 E-value=1.2e-14 Score=122.92 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=83.6
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (420)
.+|||+|||+|.+...++... ..+++|+|||+.++++|+.|+..++ +.++++++.+|...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~-~~~~~~~~~~D~~~------------------ 61 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNG-LDDRVEVIVGDARD------------------ 61 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCT-TTTTEEEEESHHHH------------------
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHcc-CCceEEEEECchhh------------------
Confidence 479999999999987777665 6899999999999999999999985 88899999987431
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccccc
Q 014664 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (420)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~ 276 (420)
+... ...++||+|+|||||+..........
T Consensus 62 ----------------------------------~~~~--~~~~~~D~Iv~npP~~~~~~~~~~~~-------------- 91 (117)
T PF13659_consen 62 ----------------------------------LPEP--LPDGKFDLIVTNPPYGPRSGDKAALR-------------- 91 (117)
T ss_dssp ----------------------------------HHHT--CTTT-EEEEEE--STTSBTT----GG--------------
T ss_pred ----------------------------------chhh--ccCceeEEEEECCCCccccccchhhH--------------
Confidence 0000 13478999999999986532211000
Q ss_pred CchHHHHHHHHHHHHHhhcCCeEEEEEe
Q 014664 277 GGERAFITRIIEDSVALKQTFRWYTSMV 304 (420)
Q Consensus 277 GGel~Fv~riI~eS~~l~~~~~w~tsmv 304 (420)
..+.++++.+.++++++|.+...+
T Consensus 92 ----~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 92 ----RLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp ----CHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHcCCCeEEEEEe
Confidence 056678888899999999887655
No 23
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.57 E-value=4e-14 Score=145.33 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=86.0
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCC--CcEEEEEccCCCCCCcccccccCCcccc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS--ELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~--~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
.+|||||||+|+|+..++.+.|..+|+++|+|+.|++.|++|++.|+ .+ .+++++..|..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~-~~~~~~v~~~~~D~l----------------- 291 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM-PEALDRCEFMINNAL----------------- 291 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-cccCceEEEEEcccc-----------------
Confidence 48999999999999999988899999999999999999999999884 43 36777766532
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
..+ ..++||+|+|||||+..... .
T Consensus 292 --------------------------------------~~~--~~~~fDlIlsNPPfh~~~~~------------~---- 315 (378)
T PRK15001 292 --------------------------------------SGV--EPFRFNAVLCNPPFHQQHAL------------T---- 315 (378)
T ss_pred --------------------------------------ccC--CCCCEEEEEECcCcccCccC------------C----
Confidence 111 13579999999999853110 0
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCC
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGR 306 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk 306 (420)
.....+|+.++.+.++++|++.+...+
T Consensus 316 -----~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 316 -----DNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred -----HHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 123568999999999999988666543
No 24
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.6e-13 Score=126.89 Aligned_cols=142 Identities=19% Similarity=0.306 Sum_probs=115.1
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
+..++|||||||++...|+... ++....++||+|.|+++..+.++.|. . .|.++..|.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-~--~~~~V~tdl------------------ 102 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-V--HIDVVRTDL------------------ 102 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-C--ccceeehhH------------------
Confidence 4579999999999998888765 56789999999999999999999985 3 477776653
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCccccc--CCCCcccCCCCCc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAG--LNPKTSCGGTPEE 272 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~--~eP~~a~~G~~~E 272 (420)
+.++. .++.|+++-||||.+..++.. ..-..+.+|+.+
T Consensus 103 -------------------------------------~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~- 142 (209)
T KOG3191|consen 103 -------------------------------------LSGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKD- 142 (209)
T ss_pred -------------------------------------Hhhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcc-
Confidence 23332 278999999999999865431 223456778887
Q ss_pred ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCce
Q 014664 273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI 324 (420)
Q Consensus 273 m~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~ 324 (420)
|.+.+.+++.+-..++.+.|||+...-+....+++.+.+++.|+..
T Consensus 143 ------Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~ 188 (209)
T KOG3191|consen 143 ------GREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGV 188 (209)
T ss_pred ------hHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccce
Confidence 8889999999999999999999877777778899999999999853
No 25
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.5e-12 Score=119.83 Aligned_cols=137 Identities=27% Similarity=0.363 Sum_probs=101.5
Q ss_pred CCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHCCC
Q 014664 86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPH 164 (420)
Q Consensus 86 PrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N~~ 164 (420)
+|++.-+.|+.|++++.... +...|+|+|||+|.++ +++.+.+ .+|+|+|+|++|++.|++|+.++
T Consensus 25 ~Tp~~~Aa~il~~a~~~g~l---------~g~~V~DlG~GTG~La--~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-- 91 (198)
T COG2263 25 RTPAPLAAYILWVAYLRGDL---------EGKTVLDLGAGTGILA--IGAALLGASRVLAVDIDPEALEIARANAEEL-- 91 (198)
T ss_pred CCChHHHHHHHHHHHHcCCc---------CCCEEEEcCCCcCHHH--HHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--
Confidence 34466789999999855431 3457999999999875 4444555 68999999999999999999984
Q ss_pred CCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEE
Q 014664 165 ISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDF 244 (420)
Q Consensus 165 l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~ 244 (420)
..+|+++..|... -..+||.
T Consensus 92 -~g~v~f~~~dv~~-----------------------------------------------------------~~~~~dt 111 (198)
T COG2263 92 -LGDVEFVVADVSD-----------------------------------------------------------FRGKFDT 111 (198)
T ss_pred -CCceEEEEcchhh-----------------------------------------------------------cCCccce
Confidence 4679999887531 1357889
Q ss_pred EEECCCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCc
Q 014664 245 CICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVT 323 (420)
Q Consensus 245 imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~ 323 (420)
++.||||-.....+ ...|+..-++-| .+. .-+++..+...+.+..++.|.+
T Consensus 112 vimNPPFG~~~rha--------------------Dr~Fl~~Ale~s-------~vV-YsiH~a~~~~f~~~~~~~~G~~ 162 (198)
T COG2263 112 VIMNPPFGSQRRHA--------------------DRPFLLKALEIS-------DVV-YSIHKAGSRDFVEKFAADLGGT 162 (198)
T ss_pred EEECCCCccccccC--------------------CHHHHHHHHHhh-------heE-EEeeccccHHHHHHHHHhcCCe
Confidence 99999998653221 467887766655 232 3456677899999999999864
No 26
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.44 E-value=4e-12 Score=129.16 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=87.4
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (420)
.+|||||||+|.++..++.+.++.+++++|+|+.|++.|++|++.|+ +. .+++..|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-l~--~~~~~~D~~------------------- 255 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-LE--GEVFASNVF------------------- 255 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CC--CEEEEcccc-------------------
Confidence 47999999999999988888888899999999999999999999985 64 344444321
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccccc
Q 014664 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (420)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~ 276 (420)
..+ .++||+|+|||||+.....
T Consensus 256 ------------------------------------~~~---~~~fDlIvsNPPFH~g~~~------------------- 277 (342)
T PRK09489 256 ------------------------------------SDI---KGRFDMIISNPPFHDGIQT------------------- 277 (342)
T ss_pred ------------------------------------ccc---CCCccEEEECCCccCCccc-------------------
Confidence 111 3579999999999853211
Q ss_pred CchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHH
Q 014664 277 GGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLIS 315 (420)
Q Consensus 277 GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~ 315 (420)
...-..++|.++..+++++|.+.....+.-....+++
T Consensus 278 --~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~ 314 (342)
T PRK09489 278 --SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLD 314 (342)
T ss_pred --cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHH
Confidence 2345678999999999999988654443334454443
No 27
>PHA03412 putative methyltransferase; Provisional
Probab=99.43 E-value=7.7e-13 Score=127.77 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=77.8
Q ss_pred CCeEEEECCchhHHHHHHHHhh---cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSV 192 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~---~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~ 192 (420)
..+|||+|||+|+|++.++.+. +..+++|+|||+.|+++|++|+. ++.++.+|...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~-------------- 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALT-------------- 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhc--------------
Confidence 3589999999999998887764 35699999999999999998853 26677776421
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCc
Q 014664 193 QDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEE 272 (420)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~E 272 (420)
. . ..++||+|||||||+.... +. ..+...
T Consensus 109 ---------------------------------------~-~---~~~~FDlIIsNPPY~~~~~-----~d--~~ar~~- 137 (241)
T PHA03412 109 ---------------------------------------T-E---FDTLFDMAISNPPFGKIKT-----SD--FKGKYT- 137 (241)
T ss_pred ---------------------------------------c-c---ccCCccEEEECCCCCCccc-----cc--cCCccc-
Confidence 0 0 1358999999999997421 00 122222
Q ss_pred ccccCchHHHHHHHHHHHHHhhcCCeE
Q 014664 273 MVCSGGERAFITRIIEDSVALKQTFRW 299 (420)
Q Consensus 273 m~~~GGel~Fv~riI~eS~~l~~~~~w 299 (420)
+..+..++|+.+.+++..+++
T Consensus 138 ------g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 138 ------GAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ------ccHHHHHHHHHHHHHcCCCEE
Confidence 567888899999988777775
No 28
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.35 E-value=6.4e-12 Score=118.64 Aligned_cols=93 Identities=11% Similarity=0.001 Sum_probs=65.5
Q ss_pred hcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHH
Q 014664 71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (420)
Q Consensus 71 ~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~ 150 (420)
.++|+.+.+|++.-. | |.+.....-+.+.+... ....++||+|||+|++++.++++. ..+++++|++++
T Consensus 19 ~~~g~~l~~~~~~~~-R-p~~d~v~e~l~~~l~~~--------~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~ 87 (199)
T PRK10909 19 QWRGRKLPVPDSPGL-R-PTTDRVRETLFNWLAPV--------IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRA 87 (199)
T ss_pred ccCCCEeCCCCCCCc-C-cCCHHHHHHHHHHHhhh--------cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHH
Confidence 478999999885321 4 44444333333333211 123589999999999987544443 468999999999
Q ss_pred HHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 151 ALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 151 AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+++.|++|++.++ +. +++++..|.
T Consensus 88 a~~~a~~Nl~~~~-~~-~v~~~~~D~ 111 (199)
T PRK10909 88 VAQQLIKNLATLK-AG-NARVVNTNA 111 (199)
T ss_pred HHHHHHHHHHHhC-CC-cEEEEEchH
Confidence 9999999999985 64 688888764
No 29
>PHA03411 putative methyltransferase; Provisional
Probab=99.33 E-value=7.6e-12 Score=123.32 Aligned_cols=134 Identities=14% Similarity=0.044 Sum_probs=91.8
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (420)
.+|||+|||+|.+...++.+.++.+++|+|+|+.+++.|++|.. +++++.+|...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~~e------------------ 120 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDVFE------------------ 120 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECchhh------------------
Confidence 58999999999987777666556899999999999999998731 46777776421
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccccc
Q 014664 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (420)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~ 276 (420)
+ . ..++||+|+|||||+....+.. ....+..|+..
T Consensus 121 ----------------------------------~----~-~~~kFDlIIsNPPF~~l~~~d~-~~~~~~~GG~~----- 155 (279)
T PHA03411 121 ----------------------------------F----E-SNEKFDVVISNPPFGKINTTDT-KDVFEYTGGEF----- 155 (279)
T ss_pred ----------------------------------h----c-ccCCCcEEEEcCCccccCchhh-hhhhhhccCcc-----
Confidence 0 0 1357999999999997533221 22234444444
Q ss_pred CchHHH--HHHHHHHHHHhhcCCeEEEEEeCCc------CcHHHHHHHHHHcCC
Q 014664 277 GGERAF--ITRIIEDSVALKQTFRWYTSMVGRK------SNLKFLISKLRKVGV 322 (420)
Q Consensus 277 GGel~F--v~riI~eS~~l~~~~~w~tsmvgk~------~~l~~l~~~L~~~g~ 322 (420)
+..+ +.+++.....++.+.|++....+-+ -.-.+..++|++.|+
T Consensus 156 --g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~ 207 (279)
T PHA03411 156 --EFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGL 207 (279)
T ss_pred --ccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCc
Confidence 3344 4678888888877777664443311 123677889998876
No 30
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.33 E-value=1.3e-11 Score=135.94 Aligned_cols=145 Identities=21% Similarity=0.159 Sum_probs=104.5
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~-~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||+|||+|++++.++.. ...+|+++|+|+.|+++|++|++.|+ +. ++++++.+|...
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng-~~~~~v~~i~~D~~~---------------- 600 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNG-LSGRQHRLIQADCLA---------------- 600 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCccceEEEEccHHH----------------
Confidence 358999999999998777653 33479999999999999999999995 76 689999887431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
++.. ..++||+|+|||||+....... ... .
T Consensus 601 ------------------------------------~l~~---~~~~fDlIilDPP~f~~~~~~~----~~~----~--- 630 (702)
T PRK11783 601 ------------------------------------WLKE---AREQFDLIFIDPPTFSNSKRME----DSF----D--- 630 (702)
T ss_pred ------------------------------------HHHH---cCCCcCEEEECCCCCCCCCccc----hhh----h---
Confidence 1111 1357999999999997533210 011 1
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCC
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQG 333 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG 333 (420)
....+..++..+..+++++|++.+... ..++....+.+.+.|+....+.+.-|+
T Consensus 631 ----~~~~y~~l~~~a~~lL~~gG~l~~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 631 ----VQRDHVALIKDAKRLLRPGGTLYFSNN-KRGFKMDEEGLAKLGLKAEEITAKTLP 684 (702)
T ss_pred ----HHHHHHHHHHHHHHHcCCCCEEEEEeC-CccCChhHHHHHhCCCeEEEEecCCCC
Confidence 344588899998999999998755444 566666688888888764444545454
No 31
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.33 E-value=6.6e-11 Score=119.15 Aligned_cols=143 Identities=19% Similarity=0.174 Sum_probs=101.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..++||+|||+|.+.+.+ ...+.+++|+|+|+.+++.|++|++.++ +.+ +.++..|..+
T Consensus 183 g~~vLDp~cGtG~~liea--a~~~~~v~g~Di~~~~~~~a~~nl~~~g-~~~-i~~~~~D~~~----------------- 241 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEA--GLMGAKVIGCDIDWKMVAGARINLEHYG-IED-FFVKRGDATK----------------- 241 (329)
T ss_pred cCEEEECCCCCCHHHHHH--HHhCCeEEEEcCCHHHHHHHHHHHHHhC-CCC-CeEEecchhc-----------------
Confidence 358999999999875443 3457899999999999999999999885 665 7787776431
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
+ + ..++.||+|+|||||....... ...
T Consensus 242 -----------------------------------l--~--~~~~~~D~Iv~dPPyg~~~~~~----------~~~---- 268 (329)
T TIGR01177 242 -----------------------------------L--P--LSSESVDAIATDPPYGRSTTAA----------GDG---- 268 (329)
T ss_pred -----------------------------------C--C--cccCCCCEEEECCCCcCccccc----------CCc----
Confidence 0 0 0135799999999997542211 010
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEe-cCCCeeeEE
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF-VQGQTCRWG 339 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~-~qG~t~Rw~ 339 (420)
...++.++++++.+.++++||+...+.... .+.+.+++.|+ .+..... ++|.-.|.+
T Consensus 269 ---~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~---~~~~~~~~~g~-i~~~~~~~~h~sl~r~i 326 (329)
T TIGR01177 269 ---LESLYERSLEEFHEVLKSEGWIVYAVPTRI---DLESLAEDAFR-VVKRFEVRVHRSLTRHI 326 (329)
T ss_pred ---hHHHHHHHHHHHHHHccCCcEEEEEEcCCC---CHHHHHhhcCc-chheeeeeeecceEEEE
Confidence 235788999999999999999987776443 34456788888 6665553 445445544
No 32
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.32 E-value=1.6e-11 Score=126.96 Aligned_cols=134 Identities=16% Similarity=0.054 Sum_probs=92.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~-~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||+|||+|++++.++. ....+|+++|+|+.|+++|++|++.|+ +. ++++++.+|...
T Consensus 221 g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ng-l~~~~v~~i~~D~~~---------------- 282 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNK-LDLSKAEFVRDDVFK---------------- 282 (396)
T ss_pred CCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcC-CCCCcEEEEEccHHH----------------
Confidence 45899999999998654442 233589999999999999999999995 76 579999887431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
++......+++||+|+||||||...... +.
T Consensus 283 ------------------------------------~l~~~~~~~~~fDlVilDPP~f~~~k~~-------l~------- 312 (396)
T PRK15128 283 ------------------------------------LLRTYRDRGEKFDVIVMDPPKFVENKSQ-------LM------- 312 (396)
T ss_pred ------------------------------------HHHHHHhcCCCCCEEEECCCCCCCChHH-------HH-------
Confidence 1111111245799999999999753211 11
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHHc
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKV 320 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~t-smvgk~~~l~~l~~~L~~~ 320 (420)
+...-+..++..+..+++++|++. +-.+..-+.+.+.+.+.+.
T Consensus 313 ---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~a 356 (396)
T PRK15128 313 ---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADA 356 (396)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHH
Confidence 022237788888899988888653 4444445556666655543
No 33
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=5.2e-11 Score=118.62 Aligned_cols=141 Identities=21% Similarity=0.271 Sum_probs=100.5
Q ss_pred CCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 014664 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168 (420)
Q Consensus 89 P~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~r 168 (420)
|+|.-.+.|+++++.. +.++||+|||||.+++ .++++...+++|+||||.|++.|++|++.|+ +...
T Consensus 147 pTT~lcL~~Le~~~~~-----------g~~vlDvGcGSGILaI-Aa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~ 213 (300)
T COG2264 147 PTTSLCLEALEKLLKK-----------GKTVLDVGCGSGILAI-AAAKLGAKKVVGVDIDPQAVEAARENARLNG-VELL 213 (300)
T ss_pred hhHHHHHHHHHHhhcC-----------CCEEEEecCChhHHHH-HHHHcCCceEEEecCCHHHHHHHHHHHHHcC-Cchh
Confidence 7888999999988862 4689999999997653 3334444579999999999999999999995 6531
Q ss_pred EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 014664 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248 (420)
Q Consensus 169 I~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcN 248 (420)
+.....+ .... ...++||+||||
T Consensus 214 ~~~~~~~-------------------------------------------------------~~~~--~~~~~~DvIVAN 236 (300)
T COG2264 214 VQAKGFL-------------------------------------------------------LLEV--PENGPFDVIVAN 236 (300)
T ss_pred hhccccc-------------------------------------------------------chhh--cccCcccEEEeh
Confidence 2111000 0111 124689999999
Q ss_pred CCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCC-cCcHHHHHHHHHHcCCceEEE
Q 014664 249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGR-KSNLKFLISKLRKVGVTIVKT 327 (420)
Q Consensus 249 PPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk-~~~l~~l~~~L~~~g~~~v~~ 327 (420)
= . -..+.+|..+...+++++|++. +-|- .++.+.+.+.+.+.|+..+.+
T Consensus 237 I--L---------------------------A~vl~~La~~~~~~lkpgg~lI-lSGIl~~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 237 I--L---------------------------AEVLVELAPDIKRLLKPGGRLI-LSGILEDQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred h--h---------------------------HHHHHHHHHHHHHHcCCCceEE-EEeehHhHHHHHHHHHHhCCCeEeEE
Confidence 5 1 1135578888888888888763 2222 467889999999999987766
Q ss_pred EE
Q 014664 328 TE 329 (420)
Q Consensus 328 ~e 329 (420)
.+
T Consensus 287 ~~ 288 (300)
T COG2264 287 LE 288 (300)
T ss_pred Ee
Confidence 55
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.27 E-value=1.4e-10 Score=108.48 Aligned_cols=119 Identities=12% Similarity=0.150 Sum_probs=94.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
+.++||||||+|+++..++...++.+|+|+|+++++++.|++|++.++ +.+ |+++.+|..+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-l~~-i~~~~~d~~~----------------- 106 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-LKN-VTVVHGRAEE----------------- 106 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-CCC-EEEEeccHhh-----------------
Confidence 468999999999999888887888999999999999999999999985 755 9998876321
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
+ . ..++||+|+||- + .+
T Consensus 107 -----------------------------------~----~-~~~~fDlV~~~~----------------~---~~---- 123 (187)
T PRK00107 107 -----------------------------------F----G-QEEKFDVVTSRA----------------V---AS---- 123 (187)
T ss_pred -----------------------------------C----C-CCCCccEEEEcc----------------c---cC----
Confidence 0 0 135799999971 0 01
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCce
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTI 324 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~ 324 (420)
+..+++++..+++++|.+..+.+ ......+.+..+..|...
T Consensus 124 -------~~~~l~~~~~~LkpGG~lv~~~~-~~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 124 -------LSDLVELCLPLLKPGGRFLALKG-RDPEEEIAELPKALGGKV 164 (187)
T ss_pred -------HHHHHHHHHHhcCCCeEEEEEeC-CChHHHHHHHHHhcCceE
Confidence 34567778888999999988887 678888888888888753
No 35
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.25 E-value=1.4e-10 Score=107.00 Aligned_cols=127 Identities=16% Similarity=0.080 Sum_probs=96.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..++||||||+|.++..++.+.++.+++|+|+++.+++.|++|++.++ +. +|+++.++...
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-~~-~i~~~~~d~~~----------------- 92 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-CG-NIDIIPGEAPI----------------- 92 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-CC-CeEEEecCchh-----------------
Confidence 358999999999999888887788899999999999999999999884 64 58887665210
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
.+ .++||+|+++-..
T Consensus 93 --------------------------------------~~---~~~~D~v~~~~~~------------------------ 107 (187)
T PRK08287 93 --------------------------------------EL---PGKADAIFIGGSG------------------------ 107 (187)
T ss_pred --------------------------------------hc---CcCCCEEEECCCc------------------------
Confidence 00 2469999985210
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEec
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~ 331 (420)
..+..+++.+...++++|++....-...+...+.+.+++.|+..+.+.+..
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 158 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQLQ 158 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEEE
Confidence 013456777778888899876544347888999999999998766665543
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.23 E-value=2.2e-10 Score=95.80 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=53.4
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
.+|||||||+|.+...++...++++++|+|+|+++++.|++|+...+ ..++|+++..|.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG-LSDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT-TTTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECcc
Confidence 58999999999998888887899999999999999999999997664 788999999874
No 37
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.22 E-value=1.1e-10 Score=116.60 Aligned_cols=137 Identities=19% Similarity=0.287 Sum_probs=95.2
Q ss_pred CCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 014664 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168 (420)
Q Consensus 89 P~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~r 168 (420)
|.|.-.+.+|+++... ..+|||+|||||.++ +.|+++...+|+|+||||.|++.|++|++.|+ ++++
T Consensus 146 ~TT~lcl~~l~~~~~~-----------g~~vLDvG~GSGILa-iaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~-~~~~ 212 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKP-----------GKRVLDVGCGSGILA-IAAAKLGAKKVVAIDIDPLAVEAARENAELNG-VEDR 212 (295)
T ss_dssp HHHHHHHHHHHHHSST-----------TSEEEEES-TTSHHH-HHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT--TTC
T ss_pred HHHHHHHHHHHHhccC-----------CCEEEEeCCcHHHHH-HHHHHcCCCeEEEecCCHHHHHHHHHHHHHcC-CCee
Confidence 5567777788777432 358999999999764 34445544589999999999999999999995 8887
Q ss_pred EEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEEC
Q 014664 169 IEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICN 248 (420)
Q Consensus 169 I~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcN 248 (420)
+.+.... +. ..++||+|++|
T Consensus 213 ~~v~~~~------------------------------------------------------~~------~~~~~dlvvAN 232 (295)
T PF06325_consen 213 IEVSLSE------------------------------------------------------DL------VEGKFDLVVAN 232 (295)
T ss_dssp EEESCTS------------------------------------------------------CT------CCS-EEEEEEE
T ss_pred EEEEEec------------------------------------------------------cc------ccccCCEEEEC
Confidence 7663110 00 13689999998
Q ss_pred CCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEE-EEeCCcCcHHHHHHHHHHcCCceEEE
Q 014664 249 PPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYT-SMVGRKSNLKFLISKLRKVGVTIVKT 327 (420)
Q Consensus 249 PPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~t-smvgk~~~l~~l~~~L~~~g~~~v~~ 327 (420)
== ...+..|+.+...+++++|++. |=+= .++...+++.+++ |+..++.
T Consensus 233 I~-----------------------------~~vL~~l~~~~~~~l~~~G~lIlSGIl-~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 233 IL-----------------------------ADVLLELAPDIASLLKPGGYLILSGIL-EEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp S------------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEE-GGGHHHHHHHHHT-TEEEEEE
T ss_pred CC-----------------------------HHHHHHHHHHHHHhhCCCCEEEEcccc-HHHHHHHHHHHHC-CCEEEEE
Confidence 51 1235677777777888877763 3332 5788899999977 9876665
Q ss_pred EE
Q 014664 328 TE 329 (420)
Q Consensus 328 ~e 329 (420)
.+
T Consensus 282 ~~ 283 (295)
T PF06325_consen 282 RE 283 (295)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 38
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.22 E-value=3.4e-10 Score=109.70 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=86.5
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..+|||+|||+|.+++.++ +....+++|+|+|+.+++.|++|++.|+ +.+++.+..+
T Consensus 120 ~~~VLDiGcGsG~l~i~~~-~~g~~~v~giDis~~~l~~A~~n~~~~~-~~~~~~~~~~--------------------- 176 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAA-KLGAKKVLAVDIDPQAVEAARENAELNG-VELNVYLPQG--------------------- 176 (250)
T ss_pred CCEEEEeCCcHHHHHHHHH-HcCCCeEEEEECCHHHHHHHHHHHHHcC-CCceEEEccC---------------------
Confidence 4589999999997765443 3333469999999999999999999985 6443332111
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
+.+||+|+||..
T Consensus 177 -------------------------------------------~~~fD~Vvani~------------------------- 188 (250)
T PRK00517 177 -------------------------------------------DLKADVIVANIL------------------------- 188 (250)
T ss_pred -------------------------------------------CCCcCEEEEcCc-------------------------
Confidence 126999999841
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEE
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTE 329 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e 329 (420)
...+..++.+...+++++|++...--...+.+.+.+.+++.|+..+.+.+
T Consensus 189 ----~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 189 ----ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred ----HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEE
Confidence 12356778888888888888754322256788999999999998766655
No 39
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.21 E-value=2.1e-10 Score=106.58 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=92.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..++||||||+|.++..++...++.+|+|+|+|+.+++.|++|++.++ +. +|+++.+|..+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-~~-~i~~i~~d~~~----------------- 103 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-LN-NVEIVNGRAED----------------- 103 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-CC-CeEEEecchhh-----------------
Confidence 458999999999998888776677899999999999999999999885 64 59998886421
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
+ ...++||+|+||. +.
T Consensus 104 -----------------------------------~-----~~~~~fD~I~s~~-~~----------------------- 119 (181)
T TIGR00138 104 -----------------------------------F-----QHEEQFDVITSRA-LA----------------------- 119 (181)
T ss_pred -----------------------------------c-----cccCCccEEEehh-hh-----------------------
Confidence 1 0135799999984 10
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHH---cCCceEEEEEe
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK---VGVTIVKTTEF 330 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~---~g~~~v~~~e~ 330 (420)
-+..+++....+++++|.+....| .....++....++ .|+..++.-++
T Consensus 120 ------~~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 120 ------SLNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHHhhhhcCceEeecccc
Confidence 022344555677788888877777 6667777666655 67776665544
No 40
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.18 E-value=6.6e-10 Score=110.09 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=88.7
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccccc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDES 196 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~ 196 (420)
.+|||+|||+|.++..++ +....+++|+|+|+.|++.|++|++.|+ +..++.+...+..
T Consensus 161 ~~VLDvGcGsG~lai~aa-~~g~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~~~~~~------------------- 219 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAAL-KLGAAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVKLIYLE------------------- 219 (288)
T ss_pred CEEEEeCCChhHHHHHHH-HcCCCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEEecccc-------------------
Confidence 589999999998775544 4445689999999999999999999995 7777766644311
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccccc
Q 014664 197 NMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCS 276 (420)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~ 276 (420)
. ...++||+|+||...
T Consensus 220 ------------------------------------~---~~~~~fDlVvan~~~------------------------- 235 (288)
T TIGR00406 220 ------------------------------------Q---PIEGKADVIVANILA------------------------- 235 (288)
T ss_pred ------------------------------------c---ccCCCceEEEEecCH-------------------------
Confidence 0 013579999999621
Q ss_pred CchHHHHHHHHHHHHHhhcCCeEEEE-EeCCcCcHHHHHHHHHHcCCceEEEEE
Q 014664 277 GGERAFITRIIEDSVALKQTFRWYTS-MVGRKSNLKFLISKLRKVGVTIVKTTE 329 (420)
Q Consensus 277 GGel~Fv~riI~eS~~l~~~~~w~ts-mvgk~~~l~~l~~~L~~~g~~~v~~~e 329 (420)
..+..++.+...+++++|++.. .+. .++...+.+.+++. +..+.+.+
T Consensus 236 ----~~l~~ll~~~~~~LkpgG~li~sgi~-~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKPGGWLILSGIL-ETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred ----HHHHHHHHHHHHHcCCCcEEEEEeCc-HhHHHHHHHHHHcc-CceeeEec
Confidence 1245677777788888887643 454 67888899999876 76665544
No 41
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.17 E-value=1.1e-10 Score=122.08 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=68.5
Q ss_pred hcCCcEEEecCCceeCCCC-CcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcH
Q 014664 71 HDHGLNWWIPDGQLCPTVP-NRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (420)
Q Consensus 71 ~ffgl~~~vp~g~LiPrvP-~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~ 149 (420)
+++|+.|.+.++.+.-.-+ ..+..+.++.+.+.. ....++||+|||+|++++.|+.. ..+++|+|+|+
T Consensus 261 ~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~---------~~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~ 329 (443)
T PRK13168 261 PEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP---------QPGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVE 329 (443)
T ss_pred EcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC---------CCCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCH
Confidence 4568888888888865311 123344444444431 12358999999999998888765 36899999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 150 VALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 150 ~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+|++.|++|++.|+ +. +++++.+|.
T Consensus 330 ~al~~A~~n~~~~~-~~-~v~~~~~d~ 354 (443)
T PRK13168 330 AMVERARENARRNG-LD-NVTFYHANL 354 (443)
T ss_pred HHHHHHHHHHHHcC-CC-ceEEEEeCh
Confidence 99999999999985 64 599998874
No 42
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.15 E-value=6e-10 Score=104.11 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=102.9
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..++||+|||+|.+++.++... +..+++|+|+++++++.|++|++.++ +.+++.++.+|...
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g-~~~~v~~~~~d~~~---------------- 103 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG-VLNNIVLIKGEAPE---------------- 103 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC-CCCCeEEEEechhh----------------
Confidence 3589999999999887776654 45689999999999999999999985 66778888766321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
.+.. ..+.||.++++.. ..
T Consensus 104 ------------------------------------~l~~---~~~~~D~V~~~~~------------------~~---- 122 (198)
T PRK00377 104 ------------------------------------ILFT---INEKFDRIFIGGG------------------SE---- 122 (198)
T ss_pred ------------------------------------hHhh---cCCCCCEEEECCC------------------cc----
Confidence 1111 1247899988631 01
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCCCeeeEEEEEee
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAWSF 344 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~lAWsF 344 (420)
-+..+++++..+++++|.+....-..+++..+...|++.|+ .+++++....+..++.-.+.|
T Consensus 123 -------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~ 184 (198)
T PRK00377 123 -------KLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITEVIIAKGMKTKVGTAM 184 (198)
T ss_pred -------cHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEEEehhhcccccCCcEe
Confidence 14567778888888888876666667788999999999998 677777665444343333333
No 43
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.12 E-value=6.9e-10 Score=104.40 Aligned_cols=132 Identities=13% Similarity=0.091 Sum_probs=95.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..+|||||||+|.+...++...++.+++|+|+|+++++.|++|++.++ + .+++++..|...
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-~-~~v~~~~~d~~~----------------- 101 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-L-TNLRLLCGDAVE----------------- 101 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-C-CCEEEEecCHHH-----------------
Confidence 458999999999998888877788899999999999999999999884 6 568888776310
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCc--ccCcccccCCCCcccCCCCCcc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPF--FESMEEAGLNPKTSCGGTPEEM 273 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF--~~s~eea~~eP~~a~~G~~~Em 273 (420)
.+... ...+.||.|++|.|. ..... ...
T Consensus 102 -----------------------------------~l~~~-~~~~~~D~V~~~~~~p~~~~~~------------~~~-- 131 (202)
T PRK00121 102 -----------------------------------VLLDM-FPDGSLDRIYLNFPDPWPKKRH------------HKR-- 131 (202)
T ss_pred -----------------------------------HHHHH-cCccccceEEEECCCCCCCccc------------ccc--
Confidence 01000 123579999998653 21100 000
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCC
Q 014664 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGV 322 (420)
Q Consensus 274 ~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~ 322 (420)
......++++...+++++|.+....-.......+.+.+++.|+
T Consensus 132 ------~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 132 ------RLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred ------ccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence 0113456677778888888887766657778899999999986
No 44
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.12 E-value=1e-09 Score=101.71 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=82.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCe---------eEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWS---------FVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQES 186 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~---------vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~ 186 (420)
...+||-.||||.|.+-.+....+.. ++|+|||+++++.|++|++..+ +.+.|.+.+.|...
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag-~~~~i~~~~~D~~~-------- 99 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG-VEDYIDFIQWDARE-------- 99 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT--CGGEEEEE--GGG--------
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc-cCCceEEEecchhh--------
Confidence 35899999999999766655555555 8999999999999999999885 88889998876431
Q ss_pred ccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCccc
Q 014664 187 LTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSC 266 (420)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~ 266 (420)
+. ...+.+|.|||||||-.......
T Consensus 100 ---------------------------------------------l~---~~~~~~d~IvtnPPyG~r~~~~~------- 124 (179)
T PF01170_consen 100 ---------------------------------------------LP---LPDGSVDAIVTNPPYGRRLGSKK------- 124 (179)
T ss_dssp ---------------------------------------------GG---GTTSBSCEEEEE--STTSHCHHH-------
T ss_pred ---------------------------------------------cc---cccCCCCEEEECcchhhhccCHH-------
Confidence 11 12468999999999975432110
Q ss_pred CCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHH
Q 014664 267 GGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFL 313 (420)
Q Consensus 267 ~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l 313 (420)
+ ...|+..++++..+.+.. |...++.....+...
T Consensus 125 ----~-------~~~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~~~ 158 (179)
T PF01170_consen 125 ----D-------LEKLYRQFLRELKRVLKP--RAVFLTTSNRELEKA 158 (179)
T ss_dssp ----H-------HHHHHHHHHHHHHCHSTT--CEEEEEESCCCHHHH
T ss_pred ----H-------HHHHHHHHHHHHHHHCCC--CEEEEEECCHHHHHH
Confidence 1 357899999999886665 555555545555443
No 45
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.11 E-value=1.9e-09 Score=113.15 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=64.6
Q ss_pred hhhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCc
Q 014664 69 LLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (420)
Q Consensus 69 L~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs 148 (420)
.+.|||.+|.++++++ + +...+. .+. + ....+|||||||+|+++..|+... +++++|+|+|
T Consensus 238 ~~~f~g~~~~v~~~v~-~----te~l~~----~~~---~------~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS 298 (475)
T PLN02336 238 YERVFGEGFVSTGGLE-T----TKEFVD----KLD---L------KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLS 298 (475)
T ss_pred HHHHhCCCCCCCchHH-H----HHHHHH----hcC---C------CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECC
Confidence 4668999999999988 1 222222 221 1 124589999999999988887654 7899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 149 DVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 149 ~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.+++.|++|+.. +..++++..+|.
T Consensus 299 ~~~l~~A~~~~~~---~~~~v~~~~~d~ 323 (475)
T PLN02336 299 VNMISFALERAIG---RKCSVEFEVADC 323 (475)
T ss_pred HHHHHHHHHHhhc---CCCceEEEEcCc
Confidence 9999999999863 445788888774
No 46
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.10 E-value=1e-09 Score=102.41 Aligned_cols=131 Identities=10% Similarity=0.079 Sum_probs=94.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..++||||||+|.+...++.+.|+..|+|+|+++++++.|++|+..++ +. +|+++.+|...
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-l~-ni~~i~~d~~~----------------- 77 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-LK-NLHVLCGDANE----------------- 77 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-CC-CEEEEccCHHH-----------------
Confidence 458999999999999899988899999999999999999999999874 65 79998887421
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCC--cccCcccccCCCCcccCCCCCcc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPP--FFESMEEAGLNPKTSCGGTPEEM 273 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPP--F~~s~eea~~eP~~a~~G~~~Em 273 (420)
++.... +++.||.+++|+| ++.. .+.++. +
T Consensus 78 -----------------------------------~~~~~~-~~~~~d~v~~~~pdpw~k~----~h~~~r--------~ 109 (194)
T TIGR00091 78 -----------------------------------LLDKFF-PDGSLSKVFLNFPDPWPKK----RHNKRR--------I 109 (194)
T ss_pred -----------------------------------HHHhhC-CCCceeEEEEECCCcCCCC----Cccccc--------c
Confidence 011111 2347999999975 3221 111111 0
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcC
Q 014664 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG 321 (420)
Q Consensus 274 ~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g 321 (420)
....++++...+++++|++.+..........+.+.+.+.+
T Consensus 110 --------~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 110 --------TQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred --------CCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC
Confidence 1245677778888999998666654555777788888876
No 47
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.08 E-value=8.8e-09 Score=97.55 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=56.5
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 014664 94 YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR 172 (420)
Q Consensus 94 yi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~ 172 (420)
+..|-..++....+ ....+|||||||+|.++..++... ++.+++|+|+++.+++.|++|++.++ + ++++++
T Consensus 30 ~~~~~~~~l~~l~~------~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~-~~v~~~ 101 (231)
T TIGR02752 30 HKKWRKDTMKRMNV------QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-L-HNVELV 101 (231)
T ss_pred hHHHHHHHHHhcCC------CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-C-CceEEE
Confidence 44555555543211 123589999999999888787765 46799999999999999999998764 5 578888
Q ss_pred EccC
Q 014664 173 KVDN 176 (420)
Q Consensus 173 ~~d~ 176 (420)
..|.
T Consensus 102 ~~d~ 105 (231)
T TIGR02752 102 HGNA 105 (231)
T ss_pred Eech
Confidence 8764
No 48
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=1.8e-09 Score=112.94 Aligned_cols=145 Identities=16% Similarity=0.142 Sum_probs=99.3
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||+|||+|.....++... ++.+++|+|+++.+++.+++|+++++ +.+ |+++.+|...
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-~~~-v~~~~~D~~~---------------- 312 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-LTN-IETKALDARK---------------- 312 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCe-EEEEeCCccc----------------
Confidence 3589999999999988888765 46799999999999999999999985 654 8888887431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
+...+ .+.||+|+||||+..... ...+|......+..++.
T Consensus 313 ------------------------------------~~~~~---~~~fD~Vl~D~Pcsg~G~-~~~~p~~~~~~~~~~~~ 352 (444)
T PRK14902 313 ------------------------------------VHEKF---AEKFDKILVDAPCSGLGV-IRRKPDIKYNKTKEDIE 352 (444)
T ss_pred ------------------------------------ccchh---cccCCEEEEcCCCCCCee-eccCcchhhcCCHHHHH
Confidence 00001 157999999999864322 23456655443332110
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~t---smvgk~~~l~~l~~~L~~~g 321 (420)
.-......+++.+..+++++|.+. +-+...++...+...+++.+
T Consensus 353 ---~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~ 399 (444)
T PRK14902 353 ---SLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP 399 (444)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC
Confidence 012234678999999988888754 34454456666666777654
No 49
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.06 E-value=9.2e-10 Score=110.32 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=65.1
Q ss_pred CcEEEecCCceeCCCCC-cHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHH
Q 014664 74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (420)
Q Consensus 74 gl~~~vp~g~LiPrvP~-R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL 152 (420)
|+.|.+.++.+..+-+. .+.++..+.+++... .+.+|||+|||+|.+++.++. .+.+|+|+|+++.|+
T Consensus 140 ~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~---------~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av 208 (315)
T PRK03522 140 GVPLFIRPQSFFQTNPAVAAQLYATARDWVREL---------PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAI 208 (315)
T ss_pred CEEEEECCCeeeecCHHHHHHHHHHHHHHHHhc---------CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHH
Confidence 55677777777664221 123333444444321 235899999999999887775 457999999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 014664 153 EWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 153 ~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.|++|++.|+ + ++++++.+|.
T Consensus 209 ~~A~~n~~~~~-l-~~v~~~~~D~ 230 (315)
T PRK03522 209 ACAKQSAAELG-L-TNVQFQALDS 230 (315)
T ss_pred HHHHHHHHHcC-C-CceEEEEcCH
Confidence 99999999995 7 5799998874
No 50
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.01 E-value=2.3e-09 Score=95.50 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=51.7
Q ss_pred CCCeEEEECCchhHHHHHHHHh-hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 115 DKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~-~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
+..+|||+|||+|.+...|+.+ .++.+++|+|+|+++++.|+++++.++ +. ++++..+|..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-~~-ni~~~~~d~~ 64 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-LD-NIEFIQGDIE 64 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-ST-TEEEEESBTT
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-cc-ccceEEeehh
Confidence 3579999999999998888843 567899999999999999999999885 66 8999998753
No 51
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.99 E-value=5.8e-09 Score=108.84 Aligned_cols=145 Identities=14% Similarity=0.078 Sum_probs=99.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..+|||+|||+|.....++...++.+++|+|+++.+++.+++|+++++ +. ++++.+|...
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g-~~--~~~~~~D~~~----------------- 304 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG-LK--ATVIVGDARD----------------- 304 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC-CC--eEEEEcCccc-----------------
Confidence 458999999999998888877666899999999999999999999985 53 6777776421
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
+ ... ...++||.|+||||+..+..- ..+|..........+ .
T Consensus 305 -----------------------------------~-~~~-~~~~~fD~Vl~D~Pcs~~G~~-~~~p~~~~~~~~~~l-~ 345 (427)
T PRK10901 305 -----------------------------------P-AQW-WDGQPFDRILLDAPCSATGVI-RRHPDIKWLRRPEDI-A 345 (427)
T ss_pred -----------------------------------c-hhh-cccCCCCEEEECCCCCccccc-ccCccccccCCHHHH-H
Confidence 0 000 023579999999999754321 224444332222100 0
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~t---smvgk~~~l~~l~~~L~~~g 321 (420)
. -.....++++.+..+++++|++. +.+...++...+...|++.+
T Consensus 346 ~--l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~ 392 (427)
T PRK10901 346 A--LAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHP 392 (427)
T ss_pred H--HHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 0 01346789999999999888754 34556778887888887764
No 52
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.98 E-value=2.6e-09 Score=109.73 Aligned_cols=90 Identities=10% Similarity=0.093 Sum_probs=63.4
Q ss_pred CcEEEecCCceeCCCCC-cHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHH
Q 014664 74 GLNWWIPDGQLCPTVPN-RSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (420)
Q Consensus 74 gl~~~vp~g~LiPrvP~-R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL 152 (420)
|+.|.++++...-+-+. ++.+..++.+.+... ...++||+|||+|.+++.++. .+.+++|+|+|+.|+
T Consensus 200 g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~---------~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av 268 (374)
T TIGR02085 200 DVPLVIRPQSFFQTNPKVAAQLYATARQWVREI---------PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAI 268 (374)
T ss_pred CEEEEECCCccccCCHHHHHHHHHHHHHHHHhc---------CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHH
Confidence 44566666666554222 122334444444311 124899999999999887774 457899999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 014664 153 EWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 153 ~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.|++|++.|+ +. +++++.+|.
T Consensus 269 ~~a~~N~~~~~-~~-~~~~~~~d~ 290 (374)
T TIGR02085 269 ACAQQSAQMLG-LD-NLSFAALDS 290 (374)
T ss_pred HHHHHHHHHcC-CC-cEEEEECCH
Confidence 99999999995 64 799988764
No 53
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.94 E-value=4.1e-09 Score=96.01 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=46.4
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..++||||||+|.+...++.+ +.+++|+|+|+.+++.+++|+..+ .+++++.+|.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~----~~v~ii~~D~ 68 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAA----DNLTVIHGDA 68 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccC----CCEEEEECch
Confidence 358999999999998888765 578999999999999999998642 3688888874
No 54
>PLN02244 tocopherol O-methyltransferase
Probab=98.93 E-value=7.4e-08 Score=97.71 Aligned_cols=85 Identities=19% Similarity=0.240 Sum_probs=62.0
Q ss_pred CCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc
Q 014664 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL 168 (420)
Q Consensus 89 P~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~r 168 (420)
..+..-+..+.+++....++.. ......+|||||||+|.+...|+.+. +.+|+|+|+|+.+++.|+++++.++ +.++
T Consensus 93 ~~~~aq~~~~~~~l~~~~~~~~-~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g-~~~~ 169 (340)
T PLN02244 93 DHRQAQIRMIEESLAWAGVPDD-DEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG-LSDK 169 (340)
T ss_pred cHHHHHHHHHHHHHHhcCCCcc-cCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC-CCCc
Confidence 3344445556666654322210 01234689999999999887777654 7899999999999999999999885 7778
Q ss_pred EEEEEccC
Q 014664 169 IEIRKVDN 176 (420)
Q Consensus 169 I~l~~~d~ 176 (420)
|+++.+|.
T Consensus 170 v~~~~~D~ 177 (340)
T PLN02244 170 VSFQVADA 177 (340)
T ss_pred eEEEEcCc
Confidence 99988874
No 55
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.92 E-value=3.6e-08 Score=83.21 Aligned_cols=57 Identities=23% Similarity=0.158 Sum_probs=49.6
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
.++||||||+|.....++.+.++.+++|+|+++.+++.|++|++.++ +. +++++..|
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~~ 77 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-VS-NIVIVEGD 77 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-CC-ceEEEecc
Confidence 48999999999998888887778899999999999999999999874 54 57777665
No 56
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.92 E-value=5e-09 Score=98.00 Aligned_cols=93 Identities=11% Similarity=-0.035 Sum_probs=64.4
Q ss_pred cCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHH
Q 014664 72 DHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVA 151 (420)
Q Consensus 72 ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~A 151 (420)
+-|..+..|++.-..+... -..+.+...+... -...++||++||||.+++.++.+- ..+++++|+|+.|
T Consensus 16 ~kg~~l~~p~~~~~rpt~~--~vrea~f~~l~~~--------~~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a 84 (189)
T TIGR00095 16 RGGRLLKLPPGGSTRPTTR--VVRELFFNILRPE--------IQGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKA 84 (189)
T ss_pred hCCcccCCCCCCCCCCchH--HHHHHHHHHHHHh--------cCCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHH
Confidence 3455666777654433222 2223333333321 023589999999999987776653 3489999999999
Q ss_pred HHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 152 LEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 152 L~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
++.+++|++.|+ +.++++++..|.
T Consensus 85 ~~~~~~N~~~~~-~~~~~~~~~~D~ 108 (189)
T TIGR00095 85 NQTLKENLALLK-SGEQAEVVRNSA 108 (189)
T ss_pred HHHHHHHHHHhC-CcccEEEEehhH
Confidence 999999999995 777899988874
No 57
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.91 E-value=9e-08 Score=97.44 Aligned_cols=148 Identities=14% Similarity=-0.012 Sum_probs=96.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..+|||||||+|.+...++...++.+++++|+|+.+++.|+++...+ +++++.+|..+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~-----~i~~i~gD~e~----------------- 171 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK-----ECKIIEGDAED----------------- 171 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc-----CCeEEeccHHh-----------------
Confidence 46899999999998887877767789999999999999999986532 36676665321
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
+ + ..++.||+|+||..+....+
T Consensus 172 -----------------------------------l--p--~~~~sFDvVIs~~~L~~~~d------------------- 193 (340)
T PLN02490 172 -----------------------------------L--P--FPTDYADRYVSAGSIEYWPD------------------- 193 (340)
T ss_pred -----------------------------------C--C--CCCCceeEEEEcChhhhCCC-------------------
Confidence 0 0 02467999999876643211
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEe--C--------------CcCcHHHHHHHHHHcCCceEEEEEecCCCe----
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYTSMV--G--------------RKSNLKFLISKLRKVGVTIVKTTEFVQGQT---- 335 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~tsmv--g--------------k~~~l~~l~~~L~~~g~~~v~~~e~~qG~t---- 335 (420)
..+++++..++++++|++...- . ...+.+++.+.|++.|+..+++. ++.+..
T Consensus 194 -------~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~-~i~~~~~~~~ 265 (340)
T PLN02490 194 -------PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK-RIGPKWYRGV 265 (340)
T ss_pred -------HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE-EcChhhcccc
Confidence 1134455555555555543211 0 02357889999999999988764 444432
Q ss_pred eeEEEEEeecCccccc
Q 014664 336 CRWGLAWSFVPPARKI 351 (420)
Q Consensus 336 ~Rw~lAWsF~~~~~~~ 351 (420)
+|..+.|+..-.++|.
T Consensus 266 ~~~~~~~~~~v~~~k~ 281 (340)
T PLN02490 266 RRHGLIMGCSVTGVKP 281 (340)
T ss_pred ccccceeeEEEEEecc
Confidence 3455666665554444
No 58
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.89 E-value=2.1e-08 Score=97.16 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=49.6
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.+|||||||+|.+...|+.. +.+|+|+|+|+++++.|+++++..+ +..+++++.++.
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g-~~~~v~~~~~d~ 102 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG-VSDNMQFIHCAA 102 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccceEEEEcCH
Confidence 468999999999887777654 6799999999999999999998874 777889888763
No 59
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.88 E-value=1e-08 Score=99.99 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=52.9
Q ss_pred hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 014664 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR 172 (420)
Q Consensus 93 nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~ 172 (420)
+.+.+|.+.+.. ....+|||||||+|.+...|+.+ ..+++|+|+|+.+++.+++++... .+++++
T Consensus 16 ~~~~~iv~~~~~---------~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~----~~v~ii 80 (258)
T PRK14896 16 RVVDRIVEYAED---------TDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAA----GNVEII 80 (258)
T ss_pred HHHHHHHHhcCC---------CCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccC----CCEEEE
Confidence 455566665532 12358999999999998888765 458999999999999999988542 468998
Q ss_pred EccC
Q 014664 173 KVDN 176 (420)
Q Consensus 173 ~~d~ 176 (420)
.+|.
T Consensus 81 ~~D~ 84 (258)
T PRK14896 81 EGDA 84 (258)
T ss_pred Eecc
Confidence 8874
No 60
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.88 E-value=3.3e-08 Score=103.08 Aligned_cols=147 Identities=15% Similarity=0.086 Sum_probs=98.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..+|||+|||+|.....++...++.+++|+|+++.+++.+++|+++++ +..++.+..+|...
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g-~~~~v~~~~~d~~~----------------- 300 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG-LTIKAETKDGDGRG----------------- 300 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCeEEEEecccccc-----------------
Confidence 358999999999998888877666899999999999999999999985 65333334443210
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
...+ ...+.||.|+++||+..+.-- ...|......+..++-
T Consensus 301 ---------------------------------~~~~----~~~~~fD~VllDaPcSg~G~~-~~~p~~~~~~~~~~~~- 341 (426)
T TIGR00563 301 ---------------------------------PSQW----AENEQFDRILLDAPCSATGVI-RRHPDIKWLRKPRDIA- 341 (426)
T ss_pred ---------------------------------cccc----ccccccCEEEEcCCCCCCccc-ccCcchhhcCCHHHHH-
Confidence 0000 124579999999998654321 2345544333332100
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~t---smvgk~~~l~~l~~~L~~~g 321 (420)
.-...-.+|++++..+++++|.+. +-+...++-..+...|.+++
T Consensus 342 --~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 342 --ELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388 (426)
T ss_pred --HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 012235678999999888888763 34555678888888888764
No 61
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.86 E-value=1.2e-07 Score=92.33 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=47.0
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.....++... +..+++|+|+++.+++.|++|++.++ + .+++++.+|.
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-~-~~v~~~~~d~ 137 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-Y-TNVEFRLGEI 137 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-C-CCEEEEEcch
Confidence 4589999999998765555443 34689999999999999999998874 5 4688877763
No 62
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.85 E-value=1.3e-07 Score=95.53 Aligned_cols=108 Identities=20% Similarity=0.371 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHhhhcCCcEEEecCCceeC---CCCCcHhHHHHHH-HHHccCCCCCCCCCCCCCeEEEECCchhHHHHH
Q 014664 57 DFNATRELTRVLLLHDHGLNWWIPDGQLCP---TVPNRSNYIHWIE-DLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPL 132 (420)
Q Consensus 57 d~~a~r~Lt~aLL~~ffgl~~~vp~g~LiP---rvP~R~nyi~wi~-dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~ 132 (420)
|++.+..+.+ +.+ .||-+.|-+-| --|.|..||..+. ..+..... ........+|||||||+|.+...
T Consensus 77 ~~~e~~~f~~--~a~----~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~--~~~~~~g~~ILDIGCG~G~~s~~ 148 (322)
T PLN02396 77 NEDELAKFSA--IAD----TWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPS--SAKPFEGLKFIDIGCGGGLLSEP 148 (322)
T ss_pred CHHHHHHHHH--HHH----HhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchh--hccCCCCCEEEEeeCCCCHHHHH
Confidence 5666555555 222 57777666544 2255777765432 22221100 00012345899999999988766
Q ss_pred HHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 133 LGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 133 La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
|+. .+.+|+|+|+++++++.|+++++.++ +..+|+++.++
T Consensus 149 La~--~g~~V~GID~s~~~i~~Ar~~~~~~~-~~~~i~~~~~d 188 (322)
T PLN02396 149 LAR--MGATVTGVDAVDKNVKIARLHADMDP-VTSTIEYLCTT 188 (322)
T ss_pred HHH--cCCEEEEEeCCHHHHHHHHHHHHhcC-cccceeEEecC
Confidence 653 57899999999999999999987764 55678888775
No 63
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.85 E-value=2.7e-08 Score=96.27 Aligned_cols=60 Identities=8% Similarity=0.140 Sum_probs=50.8
Q ss_pred CCeEEEECCchhHHHHHHHHh--hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~--~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.....++.. .++++++|+|+|+.+++.|++++..++ +..+|+++.+|.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~-~~~~v~~~~~d~ 118 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK-APTPVDVIEGDI 118 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEeCCh
Confidence 358999999999987767653 478999999999999999999998874 667899988764
No 64
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.85 E-value=3.5e-08 Score=96.67 Aligned_cols=143 Identities=10% Similarity=0.071 Sum_probs=92.3
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||+|||+|.....++.... ...|+|+|+++.+++.+++|+++++ +. .|.++..|...
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-~~-~v~~~~~D~~~---------------- 133 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-VL-NVAVTNFDGRV---------------- 133 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-CC-cEEEecCCHHH----------------
Confidence 35899999999999888877654 3589999999999999999999985 64 58887766321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
+. ...+.||.|++|||+..+.- ...+|.....-+...+.
T Consensus 134 -------------------------------------~~---~~~~~fD~Vl~D~Pcsg~G~-~~~~p~~~~~~~~~~~~ 172 (264)
T TIGR00446 134 -------------------------------------FG---AAVPKFDAILLDAPCSGEGV-IRKDPSRKKNWSEEDIQ 172 (264)
T ss_pred -------------------------------------hh---hhccCCCEEEEcCCCCCCcc-cccChhhhhcCCHHHHH
Confidence 00 01245999999999864321 12345443221111000
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEE---EeCCcCcHHHHHHHHHHc
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWYTS---MVGRKSNLKFLISKLRKV 320 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~ts---mvgk~~~l~~l~~~L~~~ 320 (420)
. =...-.+|++.+..+++++|++.. -+...++-.-+...|++.
T Consensus 173 -~--l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 173 -E--ISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred -H--HHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence 0 012345689999999888886533 344344444455556654
No 65
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.84 E-value=2.9e-07 Score=90.09 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=46.7
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHC-CCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSN-PHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N-~~l~~rI~l~~~d~ 176 (420)
..+|||+|||+|.+...|+.+. +.++|+|+|+|++|++.|+++.... .....+|+++.+|.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~ 136 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA 136 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc
Confidence 4589999999999877777664 4579999999999999998875421 01234688888764
No 66
>PRK04457 spermidine synthase; Provisional
Probab=98.83 E-value=1.1e-07 Score=93.45 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=96.5
Q ss_pred hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 014664 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR 172 (420)
Q Consensus 93 nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~ 172 (420)
.|..++...+... ..+.+|||||||+|.+...++...|+.+++++|+|+++++.|+++...++ ...+++++
T Consensus 52 ~y~~~m~~~l~~~--------~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~rv~v~ 122 (262)
T PRK04457 52 AYTRAMMGFLLFN--------PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-NGERFEVI 122 (262)
T ss_pred HHHHHHHHHHhcC--------CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-CCCceEEE
Confidence 4777775444321 13458999999999998888888888999999999999999999987653 45689998
Q ss_pred EccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcc
Q 014664 173 KVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFF 252 (420)
Q Consensus 173 ~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~ 252 (420)
.+|... .+.. ..++||+|+++. |.
T Consensus 123 ~~Da~~----------------------------------------------------~l~~---~~~~yD~I~~D~-~~ 146 (262)
T PRK04457 123 EADGAE----------------------------------------------------YIAV---HRHSTDVILVDG-FD 146 (262)
T ss_pred ECCHHH----------------------------------------------------HHHh---CCCCCCEEEEeC-CC
Confidence 887421 1111 135799999984 32
Q ss_pred cCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEE-eCCcCcHHHHHHHHHHc
Q 014664 253 ESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSM-VGRKSNLKFLISKLRKV 320 (420)
Q Consensus 253 ~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsm-vgk~~~l~~l~~~L~~~ 320 (420)
.. . .|. . + ....+++++...++++|++..- .+....+..+++.|++.
T Consensus 147 ~~----~-~~~-~-------l--------~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~ 194 (262)
T PRK04457 147 GE----G-IID-A-------L--------CTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESS 194 (262)
T ss_pred CC----C-Ccc-c-------c--------CcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHh
Confidence 11 0 110 0 0 0234556677788899998763 45555567777777765
No 67
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.83 E-value=1.7e-08 Score=100.81 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=49.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.+...|+.. ..+++|+|+|+++++.+++++..++ +.++++++.+|.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~-~~~~v~ii~~Da 94 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP-LASKLEVIEGDA 94 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC-CCCcEEEEECCH
Confidence 358999999999998777654 4579999999999999999998764 557899998874
No 68
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.81 E-value=9.7e-08 Score=88.91 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=49.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
..+|||+|||+|.++..++...++.+++|+|+|+++++.|++|++.++ + .+|+++.+|
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-~-~~v~~~~~d 98 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-V-KNVEVIEGS 98 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-C-CCeEEEECc
Confidence 358999999999998877766677899999999999999999999885 5 468888776
No 69
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.81 E-value=1.2e-08 Score=100.32 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=45.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|||||||+|.+...|+.+. .+++|+|+|+++++.+++|... .+++++.+|..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~ 97 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDAL 97 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhh
Confidence 3589999999999988887764 3899999999999999987642 46899988753
No 70
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.81 E-value=7.3e-08 Score=90.13 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=44.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
+.++||+|||+|.++..|+. .+++|+|+|+|+.|++.|+++++.++ +. +.+...|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~--~g~~V~~iD~s~~~l~~a~~~~~~~~-~~--v~~~~~d 85 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL--AGYDVRAWDHNPASIASVLDMKAREN-LP--LRTDAYD 85 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHHHhC-CC--ceeEecc
Confidence 45899999999998877775 37899999999999999999998774 53 5555444
No 71
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.80 E-value=2.3e-08 Score=104.21 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=63.4
Q ss_pred CcEEEecCCceeCCCCCcHh---HHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHH
Q 014664 74 GLNWWIPDGQLCPTVPNRSN---YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (420)
Q Consensus 74 gl~~~vp~g~LiPrvP~R~n---yi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~ 150 (420)
|+.|.+.++..... |+.. ++.++.+.+.. ....++||+|||+|.+++.++.. ..+|+|+|+++.
T Consensus 259 ~~~~~~~~~~F~Q~--N~~~~~~l~~~~~~~l~~---------~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~ 325 (431)
T TIGR00479 259 DLSFSLSARDFFQV--NSGQNEKLVDRALEALEL---------QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPE 325 (431)
T ss_pred CEEEEECCCceeec--CHHHHHHHHHHHHHHhcc---------CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHH
Confidence 55666777766653 3332 33344333321 12358999999999999888754 358999999999
Q ss_pred HHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 151 ALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 151 AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
|++.|++|++.|+ + ++|+++.+|.
T Consensus 326 av~~a~~n~~~~~-~-~nv~~~~~d~ 349 (431)
T TIGR00479 326 SVEKAQQNAELNG-I-ANVEFLAGTL 349 (431)
T ss_pred HHHHHHHHHHHhC-C-CceEEEeCCH
Confidence 9999999999985 6 4799988874
No 72
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.78 E-value=1.3e-07 Score=89.81 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=98.2
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||||||+|.....++.+.. ..+|+|+|+++. ++ +. .|+++++|......
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~-~~-~v~~i~~D~~~~~~------------- 105 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP-IV-GVDFLQGDFRDELV------------- 105 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC-CC-CcEEEecCCCChHH-------------
Confidence 35899999999998877776653 469999999981 21 22 37888887532000
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECC-CcccCcccccCCCCcccCCCCCcc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP-PFFESMEEAGLNPKTSCGGTPEEM 273 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNP-PF~~s~eea~~eP~~a~~G~~~Em 273 (420)
+ ..+.... ..+.||+|+||+ |++... |.... ..
T Consensus 106 ----------~-----------------------~~i~~~~--~~~~~D~V~S~~~~~~~g~------~~~d~---~~-- 139 (209)
T PRK11188 106 ----------L-----------------------KALLERV--GDSKVQVVMSDMAPNMSGT------PAVDI---PR-- 139 (209)
T ss_pred ----------H-----------------------HHHHHHh--CCCCCCEEecCCCCccCCC------hHHHH---HH--
Confidence 0 0011111 246799999998 666321 11000 00
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCCCe---eeEEEEEee
Q 014664 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF 344 (420)
Q Consensus 274 ~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t---~Rw~lAWsF 344 (420)
-..+...+++++..+++++|+|..-+-..+.+.++...+++ .+..++++++.+++. ..++++-.|
T Consensus 140 -----~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~s~e~~~~~~~~ 207 (209)
T PRK11188 140 -----AMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVATGR 207 (209)
T ss_pred -----HHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-CceEEEEECCccccccCceeEEEeecc
Confidence 12235678899999999999997756557888888777765 578899999999985 445555433
No 73
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.77 E-value=9e-08 Score=105.86 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=49.2
Q ss_pred CCeEEEECCchhHHHHHHHHhh----c--------------------------------------CCeeEEecCcHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASL----L--------------------------------------GWSFVGSDMTDVALE 153 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~----~--------------------------------------~~~vvavDIs~~AL~ 153 (420)
...++|-+||||.|.+-.+... | ..+++|+|||+.|++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 4689999999998876554310 0 126999999999999
Q ss_pred HHHHHHHHCCCCCCcEEEEEccCC
Q 014664 154 WAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 154 ~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.|++|+..++ +.++|++++.|..
T Consensus 271 ~A~~N~~~~g-~~~~i~~~~~D~~ 293 (702)
T PRK11783 271 AARKNARRAG-VAELITFEVKDVA 293 (702)
T ss_pred HHHHHHHHcC-CCcceEEEeCChh
Confidence 9999999995 8888999988753
No 74
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=7.5e-08 Score=100.84 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=98.4
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||+|||+|.....++... ++.+|+|+|+++.+++.+++|+++.+ +. .|+++..|...
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-~~-~v~~~~~Da~~---------------- 299 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-LS-SIEIKIADAER---------------- 299 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-CC-eEEEEECchhh----------------
Confidence 3589999999999988887765 35799999999999999999999985 64 48888776321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
+... ..++||.|+|+||+...... ..+|..-...+...+
T Consensus 300 -------------------------------------l~~~--~~~~fD~Vl~DaPCsg~G~~-~~~p~~~~~~~~~~~- 338 (431)
T PRK14903 300 -------------------------------------LTEY--VQDTFDRILVDAPCTSLGTA-RNHPEVLRRVNKEDF- 338 (431)
T ss_pred -------------------------------------hhhh--hhccCCEEEECCCCCCCccc-cCChHHHHhCCHHHH-
Confidence 0000 13579999999999654321 223433222111100
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~---tsmvgk~~~l~~l~~~L~~~g 321 (420)
.+=..+-.+|++.+..+++++|.. |+-+...++-..+...|++..
T Consensus 339 --~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~ 386 (431)
T PRK14903 339 --KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQK 386 (431)
T ss_pred --HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCC
Confidence 001235688999999998888765 444555667777777777653
No 75
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.76 E-value=2.4e-07 Score=88.80 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=50.4
Q ss_pred CCeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.....++... ++++++|+|+|+.+++.|+++++..+ ...+++++.+|.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-~~~~v~~~~~d~ 115 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-SEIPVEILCNDI 115 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-CCCCeEEEECCh
Confidence 3589999999999877777653 68999999999999999999998763 556789988774
No 76
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=1.2e-07 Score=99.23 Aligned_cols=148 Identities=14% Similarity=0.040 Sum_probs=98.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||+|||+|.....++.... ..+++|+|+++.+++.+++|+++++ +. .|+++..|...
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-~~-~v~~~~~D~~~---------------- 314 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-LK-SIKILAADSRN---------------- 314 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-CC-eEEEEeCChhh----------------
Confidence 35899999999999888887654 4689999999999999999999985 65 48888877431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
+........++||.|+++||.... .....+|.....-+...+
T Consensus 315 ------------------------------------~~~~~~~~~~~fD~Vl~DaPCSg~-G~~~r~p~~~~~~~~~~~- 356 (434)
T PRK14901 315 ------------------------------------LLELKPQWRGYFDRILLDAPCSGL-GTLHRHPDARWRQTPEKI- 356 (434)
T ss_pred ------------------------------------cccccccccccCCEEEEeCCCCcc-cccccCcchhhhCCHHHH-
Confidence 000000013579999999997432 111234443222111100
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~---tsmvgk~~~l~~l~~~L~~~g 321 (420)
. .=...-.+|++++..+++++|-+ |+.+...++...+...|++++
T Consensus 357 ~--~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 357 Q--ELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred H--HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 0 00123467899998888887754 346777788888888898874
No 77
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1e-08 Score=92.41 Aligned_cols=58 Identities=24% Similarity=0.251 Sum_probs=46.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++.+++|||||+|.+. .+..+++ -.++|+||||+||+++.+|++.. +-+|.+++.+..
T Consensus 48 Egkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf---EvqidlLqcdil 106 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEF---EVQIDLLQCDIL 106 (185)
T ss_pred cCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHh---hhhhheeeeecc
Confidence 4568999999999874 5666665 47999999999999999999875 335677777643
No 78
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.75 E-value=1.2e-07 Score=89.44 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=50.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.+...++.... ..+++|+|+++++++.|++|++.++ +.++++++.+|.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~-~~~~v~~~~~d~ 133 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG-YWGVVEVYHGDG 133 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCCcEEEEECCc
Confidence 35899999999998877776653 4689999999999999999999885 766789988774
No 79
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.72 E-value=1.5e-07 Score=98.84 Aligned_cols=143 Identities=13% Similarity=0.077 Sum_probs=95.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||+|||+|.....++.... ..+++|+|+++.+++.|++|+++++ +. .|+++.+|...
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-~~-~v~~~~~Da~~---------------- 312 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-IT-IIETIEGDARS---------------- 312 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-CC-eEEEEeCcccc----------------
Confidence 35899999999998777776553 4689999999999999999999885 64 58888776421
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
+. ..+.||.|+++||+..+.. ...+|......+.. .+
T Consensus 313 ------------------------------------~~-----~~~~fD~Vl~D~Pcsg~g~-~~r~p~~~~~~~~~-~~ 349 (445)
T PRK14904 313 ------------------------------------FS-----PEEQPDAILLDAPCTGTGV-LGRRAELRWKLTPE-KL 349 (445)
T ss_pred ------------------------------------cc-----cCCCCCEEEEcCCCCCcch-hhcCcchhhcCCHH-HH
Confidence 10 1357999999999865432 12345443322221 00
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEE---EEeCCcCcHHHHHHHHHHcC
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWYT---SMVGRKSNLKFLISKLRKVG 321 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~t---smvgk~~~l~~l~~~L~~~g 321 (420)
.. =...-.+|+..+..+++++|.+. +-+.+.++-..+...|++++
T Consensus 350 ~~--l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 397 (445)
T PRK14904 350 AE--LVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHP 397 (445)
T ss_pred HH--HHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 00 01234578999999888888763 34444556666677777663
No 80
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.71 E-value=1.2e-07 Score=91.87 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=38.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~ 157 (420)
..+|||||||+|.+...|+.+.++.+++|+|+|+.+++.|++
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE 71 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh
Confidence 468999999999998888888788999999999999999965
No 81
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.71 E-value=3.5e-07 Score=86.21 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=51.4
Q ss_pred eEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+|||||||+|.....++...++.+++|+|+|+++++.|++++...+ +.++|+++..|.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g-l~~~i~~~~~d~ 59 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG-LQGRIRIFYRDS 59 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CCcceEEEeccc
Confidence 6999999999987778777777899999999999999999998874 888899988764
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.71 E-value=3.8e-07 Score=90.19 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=45.8
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
.++||||||+|..+..|+. .+++|+|+|+|+.|++.|+++++.++ + .+++...|.
T Consensus 122 ~~vLDlGcG~G~~~~~la~--~g~~V~avD~s~~ai~~~~~~~~~~~-l--~v~~~~~D~ 176 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLAL--LGFDVTAVDINQQSLENLQEIAEKEN-L--NIRTGLYDI 176 (287)
T ss_pred CCEEEeCCCCCHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHcC-C--ceEEEEech
Confidence 4899999999998777765 37899999999999999999999874 5 477766553
No 83
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.70 E-value=3.9e-08 Score=94.91 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=53.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..++||||||+|+.++.++...+ +.+++++|+++++++.|++|++.++ +.++|+++.+|.
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g-l~~~i~~~~gda 129 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG-VDHKINFIQSDA 129 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEccH
Confidence 45899999999998777877665 5799999999999999999999995 889999999874
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.70 E-value=4.5e-07 Score=83.91 Aligned_cols=150 Identities=11% Similarity=0.090 Sum_probs=96.9
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||||||+|.+...++.+. +..+++|+|+|+.+ . . ..++++..|..+..
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~---~-~~i~~~~~d~~~~~-------------- 85 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P---I-ENVDFIRGDFTDEE-------------- 85 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c---C-CCceEEEeeCCChh--------------
Confidence 4589999999999877777665 45689999999854 1 1 23667666542100
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECC--CcccCcccccCCCCcccCCCCCc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNP--PFFESMEEAGLNPKTSCGGTPEE 272 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNP--PF~~s~eea~~eP~~a~~G~~~E 272 (420)
..+ .+.... ..+.||+|+||+ ||... +... ...
T Consensus 86 -------------------------~~~-------~l~~~~--~~~~~D~V~~~~~~~~~g~-------~~~~---~~~- 120 (188)
T TIGR00438 86 -------------------------VLN-------KIRERV--GDDKVDVVMSDAAPNISGY-------WDID---HLR- 120 (188)
T ss_pred -------------------------HHH-------HHHHHh--CCCCccEEEcCCCCCCCCC-------cccc---HHH-
Confidence 000 000001 245799999995 33110 0000 000
Q ss_pred ccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCCCe---eeEEEEEee
Q 014664 273 MVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSF 344 (420)
Q Consensus 273 m~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t---~Rw~lAWsF 344 (420)
...-...++.++..+++++|.+..++....++..+...|++. +..+.+.++..|+. .+++++-.|
T Consensus 121 ------~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 121 ------SIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred ------HHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hceEEEeCCCCCCcccceEEEEEecC
Confidence 123356778888888888988877777678888999888885 77899999999974 566666443
No 85
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.69 E-value=1.2e-07 Score=95.58 Aligned_cols=81 Identities=19% Similarity=0.092 Sum_probs=57.4
Q ss_pred CCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHH
Q 014664 73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (420)
Q Consensus 73 fgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL 152 (420)
||....+....+.++ +++...+..+.+.+.... +..+.+|||||||+|.+...|+.+ +++|+|+|+|+.++
T Consensus 109 y~~~d~v~~~~l~~~-~~~~~~v~~~l~~l~~~~------~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml 179 (315)
T PLN02585 109 YGETDEVNKVQLDIR-LGHAQTVEKVLLWLAEDG------SLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMV 179 (315)
T ss_pred cCCccccCceeeecc-cChHHHHHHHHHHHHhcC------CCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHH
Confidence 444455666678887 554445555555553210 012468999999999998777653 78999999999999
Q ss_pred HHHHHHHHHC
Q 014664 153 EWAEKNVKSN 162 (420)
Q Consensus 153 ~~A~~N~~~N 162 (420)
+.|++|++..
T Consensus 180 ~~A~~~~~~~ 189 (315)
T PLN02585 180 AEAERRAKEA 189 (315)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 86
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.68 E-value=1.2e-06 Score=82.25 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=50.2
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.....++...+ ..+++++|+++.+++.|++++..++ +..++.++..|.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~-~~~~~~~~~~d~ 112 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG-LSGNVEFVQGDA 112 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc-cccCeEEEeccc
Confidence 36899999999998877777665 6899999999999999999998763 556788877763
No 87
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.68 E-value=2.5e-07 Score=86.62 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=47.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.+|||+|||+|..+..|+.+ +++|+|+|+|+.+++.|+++++.++ +. .|+++..|.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~-~~-~v~~~~~d~ 87 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN-LD-NLHTAVVDL 87 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC-CC-cceEEecCh
Confidence 358999999999988777754 7899999999999999999998874 53 477766653
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.66 E-value=4.8e-07 Score=71.36 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=43.8
Q ss_pred eEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+++|+|||.|.+...++. ....+++++|+++.+++.++++...+ ...++.++..|.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 56 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL--LADNVEVLKGDA 56 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc--cccceEEEEcCh
Confidence 489999999988766655 46789999999999999999755443 345688877664
No 89
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.65 E-value=2.2e-07 Score=87.97 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=49.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..++||||||+|.++..|+.... ..+|+|+|+++++++.|++|++.++ + ++++++.+|.
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-~-~~v~~~~~d~ 137 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-L-DNVIVIVGDG 137 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-C-CCeEEEECCc
Confidence 45899999999999887776643 3579999999999999999999985 6 5688888764
No 90
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.63 E-value=8.7e-08 Score=98.14 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=48.4
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
.++||++||+|.+++.|+... .+|+|+|+++.|++.|++|++.|+ +. +++++..|.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~-~~-~v~~~~~d~ 263 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG-ID-NVQIIRMSA 263 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC-CC-cEEEEECCH
Confidence 369999999999998777553 489999999999999999999995 64 799998874
No 91
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.63 E-value=1.7e-06 Score=84.79 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=45.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.....|+.. .+.+++|+|+++.+++.|+++... ..+|.++..|.
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~-~~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~ 108 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEK-YGAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDI 108 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhh-cCCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCc
Confidence 458999999999877666644 478999999999999999988653 24688877763
No 92
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.63 E-value=1.8e-07 Score=100.04 Aligned_cols=59 Identities=17% Similarity=0.059 Sum_probs=44.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhhc--------CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLL--------GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~--------~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
...+|||.|||+|++...++.+.+ ...++|+|||+.++..|+.|+...+. ..+.+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d 97 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFN 97 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeecc
Confidence 356899999999999877766553 25789999999999999999987631 224444444
No 93
>PRK06922 hypothetical protein; Provisional
Probab=98.62 E-value=4.1e-07 Score=99.02 Aligned_cols=120 Identities=12% Similarity=0.134 Sum_probs=82.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
+.+|||||||+|.....|+...++.+++|+|+|+.+++.|+++...++ .++.++.+|..+ .|
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~d-Lp-------------- 480 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAIN-LS-------------- 480 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHh-Cc--------------
Confidence 358999999999888888888889999999999999999999986553 357777776321 00
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
..+ +++.||+|+||+++..-.. +-| ..+...
T Consensus 481 ----------------------------------~~f-----edeSFDvVVsn~vLH~L~s---yIp---~~g~~f---- 511 (677)
T PRK06922 481 ----------------------------------SSF-----EKESVDTIVYSSILHELFS---YIE---YEGKKF---- 511 (677)
T ss_pred ----------------------------------ccc-----CCCCEEEEEEchHHHhhhh---hcc---cccccc----
Confidence 001 2457999999998853211 001 111111
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeC
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYTSMVG 305 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~tsmvg 305 (420)
...-+.+++++....++++|++...-+
T Consensus 512 ---~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 512 ---NHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred ---cHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 123466788888888899998866543
No 94
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.62 E-value=1e-06 Score=91.16 Aligned_cols=105 Identities=16% Similarity=0.094 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHh--hhcCCcEEEecCC-------ceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhH
Q 014664 58 FNATRELTRVLL--LHDHGLNWWIPDG-------QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANC 128 (420)
Q Consensus 58 ~~a~r~Lt~aLL--~~ffgl~~~vp~g-------~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~ 128 (420)
|.-+-.|-+||. ++.|.+ +|+.+ .+... ..|+.=..+++..-. +.....+||||||+|-
T Consensus 68 p~~~~~~~~a~~~~~~~~~~--~v~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~------~~~~p~vLEIGcGsG~ 135 (390)
T PRK14121 68 PSKVGILKKALKIFSELFCA--DIISHNLAENSKKLSLK----KPYILDIDNFLDFIS------KNQEKILIEIGFGSGR 135 (390)
T ss_pred ccchHHHHHHHHHHHHHhhc--ccccccccccccccccc----ccccCCHHHHHHHhc------CCCCCeEEEEcCcccH
Confidence 444556667664 344443 34433 33333 344444444544321 1124589999999999
Q ss_pred HHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 129 IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 129 I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
....+|.+.|++.++|+|+++.+++.|.+++..++ +. +|.++.+|.
T Consensus 136 ~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-L~-NV~~i~~DA 181 (390)
T PRK14121 136 HLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-LK-NLLIINYDA 181 (390)
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEECCH
Confidence 99999999999999999999999999999999885 75 599998874
No 95
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.61 E-value=1.4e-06 Score=81.68 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=95.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDE 195 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~ 195 (420)
..+++|||||||.|++-++...|..+++|+|-++++++..++|+++.+ + ++++++.++..
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~-~n~~vv~g~Ap------------------ 94 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-V-DNLEVVEGDAP------------------ 94 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-C-CcEEEEeccch------------------
Confidence 358999999999999999877788999999999999999999999995 4 67999988631
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccc
Q 014664 196 SNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVC 275 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~ 275 (420)
..|. +.| +|...|.|+
T Consensus 95 ----------------------------------~~L~--------------~~~----------~~daiFIGG------ 110 (187)
T COG2242 95 ----------------------------------EALP--------------DLP----------SPDAIFIGG------ 110 (187)
T ss_pred ----------------------------------Hhhc--------------CCC----------CCCEEEECC------
Confidence 1111 111 122333222
Q ss_pred cCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCCCe
Q 014664 276 SGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT 335 (420)
Q Consensus 276 ~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t 335 (420)
+ .=+..+++.+...++++|-...-.-..+++..+.+.+++.|+..+....-..|..
T Consensus 111 ---g-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~~ 166 (187)
T COG2242 111 ---G-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQISRGKP 166 (187)
T ss_pred ---C-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEeeccee
Confidence 2 2377888888888888877656555678888889999999984333333344444
No 96
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.60 E-value=1e-07 Score=79.21 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=43.1
Q ss_pred EEEECCchhHHHHHHHHhh---cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 119 GFDIGTGANCIYPLLGASL---LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 119 vLDIGTGsG~I~~~La~~~---~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
|||+|||+|-....+.... +..+++|+|+|+++++.|+++....+ . .++++.+|.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-~--~~~~~~~D~ 58 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-P--KVRFVQADA 58 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-T--TSEEEESCT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-C--ceEEEECCH
Confidence 7999999999888777665 34899999999999999999998753 4 688888875
No 97
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.60 E-value=2.8e-07 Score=87.22 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=45.4
Q ss_pred hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHH
Q 014664 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (420)
Q Consensus 93 nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~ 159 (420)
.++.++...+... ....+|||||||+|.+...|+...++.+++|+|+|++|++.|+++.
T Consensus 29 ~~~~~~~~~l~~~--------~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 29 AKLAMFARALNRL--------PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred HHHHHHHHHHHhc--------CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC
Confidence 3555555555431 1235799999999998887876667889999999999999998864
No 98
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.59 E-value=1.8e-07 Score=95.52 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=48.2
Q ss_pred eEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
++||+|||+|.+++.|+... .+|+|+|++++|++.|++|++.|+ ++ +++++.+|.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~-~~-~v~~~~~d~ 254 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN-ID-NVQIIRMSA 254 (353)
T ss_pred cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-CC-cEEEEEcCH
Confidence 69999999999998887653 489999999999999999999995 74 599988874
No 99
>PRK08317 hypothetical protein; Provisional
Probab=98.58 E-value=4.3e-06 Score=78.11 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=46.5
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.+...++... +..+++|+|+++.+++.|+++... ....+.++..|.
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~---~~~~~~~~~~d~ 78 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG---LGPNVEFVRGDA 78 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC---CCCceEEEeccc
Confidence 4689999999999888787766 567999999999999999998432 234677776653
No 100
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.57 E-value=7.5e-07 Score=85.99 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=44.4
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
..+|||||||+|.+...++...++.+++|+|+|+.+++.|+++.. ++.++.+|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~~~d 84 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFVEAD 84 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEEECc
Confidence 468999999999998888877778899999999999999987642 36676665
No 101
>PRK00811 spermidine synthase; Provisional
Probab=98.57 E-value=4.2e-06 Score=83.04 Aligned_cols=62 Identities=11% Similarity=0.009 Sum_probs=47.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCC-CC--CCcEEEEEccC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI--SELIEIRKVDN 176 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~-~l--~~rI~l~~~d~ 176 (420)
.+.+|||||||.|.+...++......+|+++|||+++++.|+++....+ +. ..+++++.+|.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da 140 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG 140 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch
Confidence 3568999999999987766644344689999999999999999886421 11 45788888874
No 102
>PRK03612 spermidine synthase; Provisional
Probab=98.54 E-value=4e-07 Score=97.57 Aligned_cols=135 Identities=13% Similarity=0.051 Sum_probs=87.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHH---CC-CC-CCcEEEEEccCCCCCCccccccc
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKS---NP-HI-SELIEIRKVDNSESTPSIQESLT 188 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~---N~-~l-~~rI~l~~~d~~~~~p~~~~~~~ 188 (420)
++.+|||||||+|.+...+.. .+. .+++++|||+++++.|++|... |. .+ ..+++++.+|...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~---------- 365 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN---------- 365 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH----------
Confidence 346899999999988766664 455 6999999999999999996421 10 12 2478888776321
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCC
Q 014664 189 GKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGG 268 (420)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G 268 (420)
.+. ...++||+|++|+|.-.. |..
T Consensus 366 ------------------------------------------~l~---~~~~~fDvIi~D~~~~~~-------~~~---- 389 (521)
T PRK03612 366 ------------------------------------------WLR---KLAEKFDVIIVDLPDPSN-------PAL---- 389 (521)
T ss_pred ------------------------------------------HHH---hCCCCCCEEEEeCCCCCC-------cch----
Confidence 111 123689999999875321 100
Q ss_pred CCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeC----CcCcHHHHHHHHHHcCCceEEE
Q 014664 269 TPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG----RKSNLKFLISKLRKVGVTIVKT 327 (420)
Q Consensus 269 ~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvg----k~~~l~~l~~~L~~~g~~~v~~ 327 (420)
..+. ..+|+ +...+.++++|.+....+ ....+..+.+.+++.|+ .+..
T Consensus 390 --~~L~----t~ef~----~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~ 441 (521)
T PRK03612 390 --GKLY----SVEFY----RLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTP 441 (521)
T ss_pred --hccc----hHHHH----HHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEE
Confidence 0000 13344 445667888888765332 34556778889999998 4544
No 103
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.54 E-value=9.2e-07 Score=87.85 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=41.9
Q ss_pred CCeEEEECCchhHHHHHHHHh-------hcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGAS-------LLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~-------~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~r-I~l~~~d 175 (420)
..+|+|-+||+|.....+... .....++|+|+++.++.+|+.|+..++ .... +.+..+|
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~-~~~~~~~i~~~d 113 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG-IDNSNINIIQGD 113 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT-HHCBGCEEEES-
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc-cccccccccccc
Confidence 458999999999875555443 256789999999999999999998764 3322 3455555
No 104
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.54 E-value=1.2e-07 Score=91.66 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=49.6
Q ss_pred CCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 014664 88 VPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (420)
Q Consensus 88 vP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~ 163 (420)
.|.|++||.-....-- +-...+|||+|||-|.+...+|. -+.+|+|+|++++++++|+.-+..++
T Consensus 41 N~~rl~~i~~~~~~~~---------~l~g~~vLDvGCGgG~Lse~mAr--~Ga~VtgiD~se~~I~~Ak~ha~e~g 105 (243)
T COG2227 41 NPLRLDYIREVARLRF---------DLPGLRVLDVGCGGGILSEPLAR--LGASVTGIDASEKPIEVAKLHALESG 105 (243)
T ss_pred ccchhhhhhhhhhccc---------CCCCCeEEEecCCccHhhHHHHH--CCCeeEEecCChHHHHHHHHhhhhcc
Confidence 4669888853332100 01357899999999988777764 36999999999999999999998885
No 105
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.53 E-value=1.4e-06 Score=83.94 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=35.3
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~ 159 (420)
..+|||||||+|.+...|+. .+.+++|+|+|+.+++.|+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhC
Confidence 45899999999987666653 4689999999999999998874
No 106
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.50 E-value=2.5e-06 Score=78.53 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=81.0
Q ss_pred eEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccc
Q 014664 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESN 197 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~ 197 (420)
.|+|++||.|.-.+.+|.. ..+|+|+|+|+.-+++|+.|++-.+ +.++|+++.+|..+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYG-v~~~I~~i~gD~~~------------------- 59 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYG-VADNIDFICGDFFE------------------- 59 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT--GGGEEEEES-HHH-------------------
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEeCCHHH-------------------
Confidence 5899999999988888765 3479999999999999999999995 88999999998531
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccccC
Q 014664 198 MDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSG 277 (420)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~G 277 (420)
++... +....||+|++.||+--..-.. .+...+. +...+-
T Consensus 60 ---------------------------------~~~~~-~~~~~~D~vFlSPPWGGp~Y~~--~~~fdL~----~~~~p~ 99 (163)
T PF09445_consen 60 ---------------------------------LLKRL-KSNKIFDVVFLSPPWGGPSYSK--KDVFDLE----KSMQPF 99 (163)
T ss_dssp ---------------------------------HGGGB-------SEEEE---BSSGGGGG--SSSB-TT----TSSSS-
T ss_pred ---------------------------------HHhhc-cccccccEEEECCCCCCccccc--cCccCHH----HccCCC
Confidence 11111 1112289999999996321111 1111110 011111
Q ss_pred chHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcC--CceEEEEEec
Q 014664 278 GERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVG--VTIVKTTEFV 331 (420)
Q Consensus 278 Gel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g--~~~v~~~e~~ 331 (420)
+ +..+++.+..+-..+. ..+.|-..+..|.+..++.. -..+++.+..
T Consensus 100 ~----~~~l~~~~~~~t~nv~---l~LPRn~dl~ql~~~~~~l~~~~~~~~v~~~~ 148 (163)
T PF09445_consen 100 N----LEDLLKAARKITPNVV---LFLPRNSDLNQLSQLTRELFGPSKKCEVEQNY 148 (163)
T ss_dssp -----HHHHHHHHHHH-S-EE---EEEETTB-HHHHHHT----T-TTEEEEEEEEE
T ss_pred C----HHHHHHHHHhhCCCEE---EEeCCCCCHHHHHHHhccccCCCCeEEEEEeh
Confidence 1 4456666666655444 46888999999988866542 2335554443
No 107
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.50 E-value=2.9e-06 Score=84.37 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=54.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..++||||||+|.+...++.+.|+.+++++|+ +.+++.|++|++..+ +.++|+++.+|..
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g-l~~rv~~~~~d~~ 209 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG-VADRMRGIAVDIY 209 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC-ccceEEEEecCcc
Confidence 45899999999999988998889999999998 799999999999885 8889999988753
No 108
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.49 E-value=1.3e-05 Score=74.49 Aligned_cols=57 Identities=25% Similarity=0.233 Sum_probs=46.4
Q ss_pred CCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||+|||+|.+...++...+. .+++++|+++.+++.++++.. ...++.++.+|.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~----~~~~i~~~~~d~ 97 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE----LPLNIEFIQADA 97 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc----cCCCceEEecch
Confidence 468999999999987777777665 789999999999999999875 234678877663
No 109
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.46 E-value=6.8e-07 Score=86.45 Aligned_cols=59 Identities=24% Similarity=0.256 Sum_probs=43.8
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.+|||+|||+|-+...|+.+. ++.+|+|+|+|+.+|+.|++.++..+ .. +|+++.+|.
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-~~-~i~~v~~da 107 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-LQ-NIEFVQGDA 107 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BT
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-CC-CeeEEEcCH
Confidence 4599999999999887777654 46799999999999999999999874 43 899999874
No 110
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.45 E-value=2.9e-07 Score=85.96 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=57.9
Q ss_pred CcEEEecCC-ceeCCCCCc--HhHHHHHHHH-HccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcH
Q 014664 74 GLNWWIPDG-QLCPTVPNR--SNYIHWIEDL-LSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTD 149 (420)
Q Consensus 74 gl~~~vp~g-~LiPrvP~R--~nyi~wi~dl-l~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~ 149 (420)
|..+..|++ .+=|| ++| +....||... + ...++||+.+|||++++-..++ ...+++.+|.|+
T Consensus 10 gr~l~~p~~~~~RPT-~drvrealFniL~~~~~------------~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~ 75 (183)
T PF03602_consen 10 GRKLKTPKGDNTRPT-TDRVREALFNILQPRNL------------EGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNR 75 (183)
T ss_dssp T-EEE-TT--TS-SS-SHHHHHHHHHHHHCH-H------------TT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-H
T ss_pred CCEecCCCCCCcCCC-cHHHHHHHHHHhccccc------------CCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCH
Confidence 566777775 44454 332 4444444433 2 2468999999999998765443 345899999999
Q ss_pred HHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 150 VALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 150 ~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
++++..++|++..+ +.++++++..|.
T Consensus 76 ~a~~~i~~N~~~l~-~~~~~~v~~~d~ 101 (183)
T PF03602_consen 76 KAIKIIKKNLEKLG-LEDKIRVIKGDA 101 (183)
T ss_dssp HHHHHHHHHHHHHT--GGGEEEEESSH
T ss_pred HHHHHHHHHHHHhC-CCcceeeeccCH
Confidence 99999999999884 777899988873
No 111
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.44 E-value=9.1e-06 Score=77.18 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=44.3
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
..+|||||||+|.+...++.. +.+++++|+++.+++.|++++..++ + .++++..+
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~--~~~~~~~~ 103 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESG-L--KIDYRQTT 103 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcC-C--ceEEEecC
Confidence 458999999999987766543 5789999999999999999998763 3 46666554
No 112
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.44 E-value=2.5e-06 Score=80.30 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=46.6
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.....++... .+++++|+++++++.|++|++.++ +. .++++.+|.
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~-~~-~v~~~~~d~ 135 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG-LH-NVSVRHGDG 135 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC-CC-ceEEEECCc
Confidence 4689999999998876665442 489999999999999999999884 64 488887763
No 113
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.44 E-value=5.4e-06 Score=78.10 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=47.2
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
..+|||||||+|.++..|+.. +..++|+|+|+.+++.|+++....+ +.++|.+...|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~-~~~~i~~~~~d 120 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAG-LAGNITFEVGD 120 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC-CccCcEEEEcC
Confidence 358999999999887777654 4679999999999999999998774 55678887765
No 114
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.43 E-value=8.4e-07 Score=83.82 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=48.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..++||||||+|.+...++.. +.+++|+|+|+++++.|++++..++ ..+++.+...|.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~ 113 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD-VAGNVEFEVNDL 113 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEECCh
Confidence 468999999999987777643 6799999999999999999998774 556788887763
No 115
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.43 E-value=1.2e-06 Score=85.10 Aligned_cols=74 Identities=26% Similarity=0.277 Sum_probs=58.3
Q ss_pred HHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEc
Q 014664 95 IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174 (420)
Q Consensus 95 i~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~ 174 (420)
-.|=..+...... ..+.+|||+|||||-++..++......+|+|+|+|+.||+.|++-+..-+ ... |+++.+
T Consensus 37 ~~Wr~~~i~~~~~------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~-~~~-i~fv~~ 108 (238)
T COG2226 37 RLWRRALISLLGI------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG-VQN-VEFVVG 108 (238)
T ss_pred HHHHHHHHHhhCC------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC-ccc-eEEEEe
Confidence 3465555543211 13568999999999999999888778899999999999999999998653 555 999998
Q ss_pred cC
Q 014664 175 DN 176 (420)
Q Consensus 175 d~ 176 (420)
|.
T Consensus 109 dA 110 (238)
T COG2226 109 DA 110 (238)
T ss_pred ch
Confidence 74
No 116
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.43 E-value=7.9e-07 Score=86.36 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=45.3
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.+...|+.+. ..++|+|+|+.+++.++++... ..+++++.+|.
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~----~~~v~v~~~D~ 84 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL----YERLEVIEGDA 84 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc----CCcEEEEECch
Confidence 4589999999999988887664 3599999999999999988743 24688888874
No 117
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.42 E-value=1e-06 Score=70.32 Aligned_cols=51 Identities=31% Similarity=0.418 Sum_probs=40.5
Q ss_pred EEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 120 LDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
||||||+|-....|+.+ ++.+++|+|+++++++.|+++.... .+.++..|.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~ 51 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDA 51 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBT
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc-----CchheeehH
Confidence 89999999888777766 7899999999999999999987654 355776663
No 118
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.42 E-value=3.8e-06 Score=78.74 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=45.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.+|||||||+|.....++...+..+++++|+++.+++.|+++.. .++.++..|.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~ 89 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDA 89 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecch
Confidence 468999999999988888887788899999999999999887653 2466776653
No 119
>PRK06202 hypothetical protein; Provisional
Probab=98.42 E-value=6.4e-07 Score=85.46 Aligned_cols=47 Identities=21% Similarity=0.187 Sum_probs=38.7
Q ss_pred CCeEEEECCchhHHHHHHHHhh----cCCeeEEecCcHHHHHHHHHHHHHC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSN 162 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~----~~~~vvavDIs~~AL~~A~~N~~~N 162 (420)
..+|||||||+|.+...|+... ++++++|+|+++++++.|+++...+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~ 111 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP 111 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC
Confidence 4689999999998877776432 4579999999999999999886544
No 120
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.40 E-value=1.3e-06 Score=90.52 Aligned_cols=131 Identities=20% Similarity=0.227 Sum_probs=92.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCC-eeEEecCcHHHHHHHHHHHHHCCCC-CCcEEEEEccCCCCCCcccccccCCccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHI-SELIEIRKVDNSESTPSIQESLTGKSVQ 193 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~-~vvavDIs~~AL~~A~~N~~~N~~l-~~rI~l~~~d~~~~~p~~~~~~~~~~~~ 193 (420)
..+|||+.|=||..+ +.+...++ +++.||+|..||++|++|++.|+ + .+++.++..|...
T Consensus 218 GkrvLNlFsYTGgfS--v~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg-~~~~~~~~i~~Dvf~--------------- 279 (393)
T COG1092 218 GKRVLNLFSYTGGFS--VHAALGGASEVTSVDLSKRALEWARENAELNG-LDGDRHRFIVGDVFK--------------- 279 (393)
T ss_pred CCeEEEecccCcHHH--HHHHhcCCCceEEEeccHHHHHHHHHHHHhcC-CCccceeeehhhHHH---------------
Confidence 458999999998664 44455676 99999999999999999999996 5 4678999887542
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcc
Q 014664 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (420)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em 273 (420)
+|......+++||+|+..||=|...... .+.
T Consensus 280 -------------------------------------~l~~~~~~g~~fDlIilDPPsF~r~k~~------~~~------ 310 (393)
T COG1092 280 -------------------------------------WLRKAERRGEKFDLIILDPPSFARSKKQ------EFS------ 310 (393)
T ss_pred -------------------------------------HHHHHHhcCCcccEEEECCcccccCccc------chh------
Confidence 2333334567999999999988653321 122
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEE-EEEeCCcCcHHHHHHHHH
Q 014664 274 VCSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLR 318 (420)
Q Consensus 274 ~~~GGel~Fv~riI~eS~~l~~~~~w~-tsmvgk~~~l~~l~~~L~ 318 (420)
...-+.+|+..+.+++.++|.+ ++-....-..+.+++.+.
T Consensus 311 -----~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~ 351 (393)
T COG1092 311 -----AQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIA 351 (393)
T ss_pred -----HHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHH
Confidence 3445889999999998887764 444443344454444443
No 121
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.40 E-value=6e-07 Score=92.80 Aligned_cols=57 Identities=14% Similarity=-0.030 Sum_probs=48.4
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
.++||++||+|.+++.++.+....+|+++|+|+.|++.|++|++.|+ +. .++++..|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-~~-~~~v~~~D 115 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-LE-NEKVFNKD 115 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-ceEEEhhh
Confidence 57999999999999888876654589999999999999999999995 65 45666665
No 122
>PRK04266 fibrillarin; Provisional
Probab=98.40 E-value=1.6e-05 Score=76.65 Aligned_cols=57 Identities=7% Similarity=-0.043 Sum_probs=45.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||+|||+|.+...|+...+..+|+|+|+++.+++.+.++++.. .+|.++.+|.
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~ 129 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADA 129 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCC
Confidence 35899999999998888876655568999999999999888887653 2477777764
No 123
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.39 E-value=3e-06 Score=80.46 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=49.5
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|.+...++.... +.+++++|+++++++.|++|++.++ + .+|+++.+|.
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-~-~~v~~~~gd~ 136 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-Y-DNVEVIVGDG 136 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-C-CCeEEEECCc
Confidence 35899999999998877776543 4699999999999999999999874 5 4689988874
No 124
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=4.9e-06 Score=81.21 Aligned_cols=127 Identities=15% Similarity=0.208 Sum_probs=100.0
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||.|||||++...|+... +.-+++..|+.++.++.|++|++..+ +.++|++..+|..+
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~-l~d~v~~~~~Dv~~---------------- 157 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG-LGDRVTLKLGDVRE---------------- 157 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc-cccceEEEeccccc----------------
Confidence 4689999999999988888655 44699999999999999999999984 88889988877542
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
+. ..+.||.++--=| +| .
T Consensus 158 ---------------------------------------~~--~~~~vDav~LDmp----------~P--------W--- 175 (256)
T COG2519 158 ---------------------------------------GI--DEEDVDAVFLDLP----------DP--------W--- 175 (256)
T ss_pred ---------------------------------------cc--cccccCEEEEcCC----------Ch--------H---
Confidence 00 1236777764322 11 1
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEec
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~ 331 (420)
+.|+.....+++++++.+.+.--+|++.+.+.|++.|+..+++.|-.
T Consensus 176 ----------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~E~l 222 (256)
T COG2519 176 ----------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAVETL 222 (256)
T ss_pred ----------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhheee
Confidence 45555667788999999999888999999999999999998888854
No 125
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.37 E-value=1.5e-06 Score=81.21 Aligned_cols=89 Identities=19% Similarity=0.385 Sum_probs=67.8
Q ss_pred EEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHH
Q 014664 76 NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA 155 (420)
Q Consensus 76 ~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A 155 (420)
++|..++. -.-.+.|+.|+.....+. ....+|||+|||.|-+.--|+.+-..-..+|+|-+++|+++|
T Consensus 40 EvWFg~~a-------e~riv~wl~d~~~~~rv~-----~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA 107 (227)
T KOG1271|consen 40 EVWFGEDA-------EERIVDWLKDLIVISRVS-----KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELA 107 (227)
T ss_pred ceecCCcH-------HHHHHHHHHhhhhhhhhc-----ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHH
Confidence 46666543 244688999988733221 122389999999998877787765555699999999999999
Q ss_pred HHHHHHCCCCCCcEEEEEccCC
Q 014664 156 EKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 156 ~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
+..+++++ +++.|++.+.|..
T Consensus 108 ~niAe~~~-~~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 108 QNIAERDG-FSNEIRFQQLDIT 128 (227)
T ss_pred HHHHHhcC-CCcceeEEEeecc
Confidence 98888885 8888999988864
No 126
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.36 E-value=5.3e-06 Score=85.35 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=48.4
Q ss_pred CeEEEECCchhHHHHHHHHhhcC--------------------------------C-------eeEEecCcHHHHHHHHH
Q 014664 117 VKGFDIGTGANCIYPLLGASLLG--------------------------------W-------SFVGSDMTDVALEWAEK 157 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~--------------------------------~-------~vvavDIs~~AL~~A~~ 157 (420)
..++|==||||-|.+-.|..-.+ . .++|+|||+.+++.|+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~ 272 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKA 272 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHH
Confidence 47999999999887655443221 1 37899999999999999
Q ss_pred HHHHCCCCCCcEEEEEccCC
Q 014664 158 NVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 158 N~~~N~~l~~rI~l~~~d~~ 177 (420)
|+++-+ +.+.|+|.+.|..
T Consensus 273 NA~~AG-v~d~I~f~~~d~~ 291 (381)
T COG0116 273 NARAAG-VGDLIEFKQADAT 291 (381)
T ss_pred HHHhcC-CCceEEEEEcchh
Confidence 999985 9999999998753
No 127
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.34 E-value=3.3e-06 Score=84.20 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=85.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCC-eeEEecCcHHHHHHHHHHHHHCCCCC-CcEEEEEccCCCCCCcccccccCCccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHIS-ELIEIRKVDNSESTPSIQESLTGKSVQ 193 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~-~vvavDIs~~AL~~A~~N~~~N~~l~-~rI~l~~~d~~~~~p~~~~~~~~~~~~ 193 (420)
..+|||+-|=+|..++ ++...++ +++.+|+|..|+++|++|++.|+ +. ++++++..|...
T Consensus 124 gkrvLnlFsYTGgfsv--~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg-~~~~~~~~~~~Dvf~--------------- 185 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSV--AAAAGGAKEVVSVDSSKRALEWAKENAALNG-LDLDRHRFIQGDVFK--------------- 185 (286)
T ss_dssp TCEEEEET-TTTHHHH--HHHHTTESEEEEEES-HHHHHHHHHHHHHTT--CCTCEEEEES-HHH---------------
T ss_pred CCceEEecCCCCHHHH--HHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCccceEEEecCHHH---------------
Confidence 3599999999987754 3334554 79999999999999999999996 65 689998877431
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcc
Q 014664 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (420)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em 273 (420)
.+..+ +..++||+||+.||=|.... + .
T Consensus 186 -------------------------------------~l~~~-~~~~~fD~IIlDPPsF~k~~---------~----~-- 212 (286)
T PF10672_consen 186 -------------------------------------FLKRL-KKGGRFDLIILDPPSFAKSK---------F----D-- 212 (286)
T ss_dssp -------------------------------------HHHHH-HHTT-EEEEEE--SSEESST---------C----E--
T ss_pred -------------------------------------HHHHH-hcCCCCCEEEECCCCCCCCH---------H----H--
Confidence 12221 23468999999999774211 0 0
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEE-EEEeCCcCcHHHHHHHHHHcCC
Q 014664 274 VCSGGERAFITRIIEDSVALKQTFRWY-TSMVGRKSNLKFLISKLRKVGV 322 (420)
Q Consensus 274 ~~~GGel~Fv~riI~eS~~l~~~~~w~-tsmvgk~~~l~~l~~~L~~~g~ 322 (420)
-..=+.+++..+..++.++|.+ ++-.+..-+.+.+++.+++.+-
T Consensus 213 -----~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~ 257 (286)
T PF10672_consen 213 -----LERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAR 257 (286)
T ss_dssp -----HHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCc
Confidence 1123778999999999888864 4555545556777777777653
No 128
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.34 E-value=5.9e-06 Score=85.44 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=43.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
..+|||||||+|.++..++.. ++.+|+|+|+|+++++.|+++++. + .+++...|
T Consensus 168 g~rVLDIGcG~G~~a~~la~~-~g~~V~giDlS~~~l~~A~~~~~~---l--~v~~~~~D 221 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEH-YGVSVVGVTISAEQQKLAQERCAG---L--PVEIRLQD 221 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHhcc---C--eEEEEECc
Confidence 358999999999987666644 578999999999999999999842 3 26666554
No 129
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=2.8e-06 Score=84.36 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=52.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..++||||||-|.+.+.+| +.++.+|+|+++|++.++.|++-++.-+ ++++|+++.+|..
T Consensus 73 G~~lLDiGCGWG~l~~~aA-~~y~v~V~GvTlS~~Q~~~~~~r~~~~g-l~~~v~v~l~d~r 132 (283)
T COG2230 73 GMTLLDIGCGWGGLAIYAA-EEYGVTVVGVTLSEEQLAYAEKRIAARG-LEDNVEVRLQDYR 132 (283)
T ss_pred CCEEEEeCCChhHHHHHHH-HHcCCEEEEeeCCHHHHHHHHHHHHHcC-CCcccEEEecccc
Confidence 4699999999999865555 4569999999999999999999998885 8889999988854
No 130
>PLN03075 nicotianamine synthase; Provisional
Probab=98.31 E-value=2.1e-06 Score=85.93 Aligned_cols=62 Identities=23% Similarity=0.186 Sum_probs=49.6
Q ss_pred CCCeEEEECCchhHHHHHHH--HhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 115 DKVKGFDIGTGANCIYPLLG--ASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La--~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
.+.+|+|||||.|-+..++. ...++.+|+++|+|+++++.|+++++...++.++|+|..+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da 186 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV 186 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch
Confidence 45689999999885544433 345788999999999999999999965335888999998874
No 131
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.29 E-value=2.4e-05 Score=79.13 Aligned_cols=58 Identities=16% Similarity=-0.001 Sum_probs=40.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
..+|||||||+|.....++... ...|+|+|+|+.++..++...+..+ ...+|.++..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~-~~~~i~~~~~d 180 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLG-NDQRAHLLPLG 180 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcC-CCCCeEEEeCC
Confidence 3589999999998766665543 3369999999998876555433321 23468887765
No 132
>PRK01581 speE spermidine synthase; Validated
Probab=98.28 E-value=4.5e-05 Score=78.48 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=43.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHH-----HHCCCCCCcEEEEEccC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV-----KSNPHISELIEIRKVDN 176 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~-----~~N~~l~~rI~l~~~d~ 176 (420)
.+.+||+||||.|.....+....+..+++++|||++++++|++.- .....-..+++++.+|.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da 216 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA 216 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH
Confidence 356999999999987655554323468999999999999999621 11110135788887774
No 133
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.24 E-value=9.5e-06 Score=79.56 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=40.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhc---CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL---GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~---~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
..+|||||||+|.....|+...+ .+.++|+|+|+.+++.|+++. + .+.+..+|
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~----~~~~~~~d 141 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---P----QVTFCVAS 141 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---C----CCeEEEee
Confidence 35799999999988777776654 258999999999999997652 2 35666665
No 134
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.23 E-value=6.9e-06 Score=77.49 Aligned_cols=56 Identities=25% Similarity=0.357 Sum_probs=44.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.++||||||.|-.+.-||.+ ++.|+|+|+|+.+++.+++-++..+ ++ |+....|.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~-l~--i~~~~~Dl 86 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEG-LD--IRTRVADL 86 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT--T--EEEEE-BG
T ss_pred CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcC-ce--eEEEEecc
Confidence 569999999999998888754 8999999999999999999888874 65 88877764
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.22 E-value=6.7e-06 Score=83.30 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=48.4
Q ss_pred CCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
..+|||||||+|.++..++..... ..|+|+|+++++++.|++|++.++ + +++.++.+|
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-~-~nV~~i~gD 139 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-I-ENVIFVCGD 139 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-C-CcEEEEeCC
Confidence 358999999999998888765542 479999999999999999999885 5 468887776
No 136
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.22 E-value=7.5e-05 Score=70.16 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=51.9
Q ss_pred HHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEc
Q 014664 95 IHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV 174 (420)
Q Consensus 95 i~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~ 174 (420)
+.||.+.+..... .....+|||||||+|-+...++.. +..++++|+++.+++.|++++..++ .. ++.+...
T Consensus 30 ~~~i~~~~~~~~~-----~~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~~-~~~~~~~ 100 (224)
T TIGR01983 30 LDYIRDTIRKNKK-----PLFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDP-LL-KIEYRCT 100 (224)
T ss_pred HHHHHHHHHhccc-----CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcC-CC-ceEEEeC
Confidence 5677777764210 113468999999999877666543 4579999999999999999998774 32 4666655
Q ss_pred c
Q 014664 175 D 175 (420)
Q Consensus 175 d 175 (420)
+
T Consensus 101 d 101 (224)
T TIGR01983 101 S 101 (224)
T ss_pred C
Confidence 4
No 137
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.21 E-value=6.4e-06 Score=78.16 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=60.6
Q ss_pred hhcCCcEEE--ecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecC
Q 014664 70 LHDHGLNWW--IPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDM 147 (420)
Q Consensus 70 ~~ffgl~~~--vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDI 147 (420)
..-+|+.|. +..-...|+ ..+.+ ..+.... .....|+|+.||-|..++.+|.......|+|+|+
T Consensus 68 ~~E~G~~f~~D~~kvyfs~r----l~~Er--~Ri~~~v--------~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~ 133 (200)
T PF02475_consen 68 HKENGIRFKVDLSKVYFSPR----LSTER--RRIANLV--------KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDL 133 (200)
T ss_dssp EEETTEEEEEETTTS---GG----GHHHH--HHHHTC----------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES
T ss_pred EEeCCEEEEEccceEEEccc----cHHHH--HHHHhcC--------CcceEEEEccCCccHHHHHHhhhcCccEEEEecC
Confidence 446788654 444556676 33333 1222211 1245899999999998887776556678999999
Q ss_pred cHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 148 TDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 148 s~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+|.|+++.++|++.|+ ++++|.++.+|.
T Consensus 134 Np~a~~~L~~Ni~lNk-v~~~i~~~~~D~ 161 (200)
T PF02475_consen 134 NPDAVEYLKENIRLNK-VENRIEVINGDA 161 (200)
T ss_dssp -HHHHHHHHHHHHHTT--TTTEEEEES-G
T ss_pred CHHHHHHHHHHHHHcC-CCCeEEEEcCCH
Confidence 9999999999999995 999999998874
No 138
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.19 E-value=1.3e-05 Score=74.44 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=33.3
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~ 157 (420)
.+|||||||+|.+...++.. .+..++|+|+++++++.|++
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~ 54 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA 54 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH
Confidence 48999999999987666543 56788999999999998864
No 139
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=3.6e-06 Score=88.35 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=66.9
Q ss_pred CcEEEecCCcee-CCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHH
Q 014664 74 GLNWWIPDGQLC-PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (420)
Q Consensus 74 gl~~~vp~g~Li-PrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL 152 (420)
++.|.++++... |-..-.+.++.|+.+.+... ...++||+=||.|-+++.||. ...+|+|+||+++|+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~---------~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV 328 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELA---------GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAV 328 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhc---------CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHH
Confidence 566777764333 22222355667777777642 245899999999999888873 356899999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 014664 153 EWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 153 ~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.|++|++.|+ +.+ +++...+.
T Consensus 329 ~~A~~NA~~n~-i~N-~~f~~~~a 350 (432)
T COG2265 329 EAAQENAAANG-IDN-VEFIAGDA 350 (432)
T ss_pred HHHHHHHHHcC-CCc-EEEEeCCH
Confidence 99999999996 765 88887763
No 140
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.18 E-value=8.1e-05 Score=75.22 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=70.0
Q ss_pred CCCHHHHHhhCCCcccce-eccCCCCccccCC---CHHHHHHHHHHHhhhcCCc---EEEecCCceeCCCCCcHhHHHHH
Q 014664 26 PPDFALLASLYPSFEPFV-FYSRDGRPRIDWT---DFNATRELTRVLLLHDHGL---NWWIPDGQLCPTVPNRSNYIHWI 98 (420)
Q Consensus 26 ~~dF~~La~~yP~l~~~v-~~~~~g~~~IDf~---d~~a~r~Lt~aLL~~ffgl---~~~vp~g~LiPrvP~R~nyi~wi 98 (420)
-+.+....++-|.+.+-- ..+. .++|.-. +....++|.. +|+..++. .|.+ .++-+|+ +-...+.|-
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~-~l~~l~p~~~~~~~l-~~~~~~~--e~~s~~~~~ 111 (314)
T TIGR00452 38 FKQWSNAVEFLPEIKPYRLDLLM--LVCNDKSNPLSAGQIKRILE-EIMALMPWRKGPFEL-SGIKIDS--EWRSDIKWD 111 (314)
T ss_pred HHHHHHHHHhcCCCCcCeeeccC--ccccCCCCCCCHHHHHHHHH-HHHhcCCCCCCCccc-ccccCCH--HHHHHHHHH
Confidence 456667777777765532 2211 1222222 2344556654 45555443 2443 3555554 222233332
Q ss_pred HHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 99 EDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 99 ~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
. ++.. +. .....+|||||||+|.....++.. ....|+|+|+|+.++..++...+... ...++.+...+
T Consensus 112 ~-~l~~--l~----~~~g~~VLDvGCG~G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~-~~~~v~~~~~~ 179 (314)
T TIGR00452 112 R-VLPH--LS----PLKGRTILDVGCGSGYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLD-NDKRAILEPLG 179 (314)
T ss_pred H-HHHh--cC----CCCCCEEEEeccCCcHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhc-cCCCeEEEECC
Confidence 2 1111 11 112458999999999765555433 23479999999999987654333211 12356665543
No 141
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.16 E-value=7.2e-05 Score=73.25 Aligned_cols=131 Identities=16% Similarity=0.180 Sum_probs=95.6
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+||+.|||||++...|+... |.-+|+-.|+.++-++.|++|++.++ +.+.|++.+.|....
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g-l~~~v~~~~~Dv~~~--------------- 104 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG-LDDNVTVHHRDVCEE--------------- 104 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT-CCTTEEEEES-GGCG---------------
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC-CCCCceeEecceecc---------------
Confidence 4589999999999998888655 55699999999999999999999995 888999999886420
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
-|.. ..+..||.++--=| +|..+
T Consensus 105 ------------------------------------g~~~--~~~~~~DavfLDlp----------~Pw~~--------- 127 (247)
T PF08704_consen 105 ------------------------------------GFDE--ELESDFDAVFLDLP----------DPWEA--------- 127 (247)
T ss_dssp --------------------------------------ST--T-TTSEEEEEEESS----------SGGGG---------
T ss_pred ------------------------------------cccc--cccCcccEEEEeCC----------CHHHH---------
Confidence 0100 01245777654322 23322
Q ss_pred ccCchHHHHHHHHHHHHHhh-cCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEec
Q 014664 275 CSGGERAFITRIIEDSVALK-QTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFV 331 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~-~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~ 331 (420)
|..+...+ +++|++.+.+.--+|+..+.+.|++.|+..+++.|-+
T Consensus 128 ------------i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~Evl 173 (247)
T PF08704_consen 128 ------------IPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVEVL 173 (247)
T ss_dssp ------------HHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ------------HHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEEEE
Confidence 22233334 7899999999988999999999999999999999965
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.15 E-value=4.5e-05 Score=75.01 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=44.6
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCC-CC-CCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HI-SELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~-~l-~~rI~l~~~d 175 (420)
+.+||+||||+|.+...++...+..+++++|+|+++++.|+++..... .+ ..+++++..|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D 134 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD 134 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc
Confidence 459999999999987666554445789999999999999999875431 11 2356766654
No 143
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.13 E-value=4.2e-06 Score=79.60 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=53.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.+||+||||+|.-++.++..++ +.+++.+|++++..+.|++|++..+ +.++|+++.+|.
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag-~~~~I~~~~gda 106 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG-LDDRIEVIEGDA 106 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT-GGGGEEEEES-H
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC-CCCcEEEEEecc
Confidence 46899999999998888887776 5899999999999999999999995 889999999873
No 144
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.13 E-value=7e-06 Score=81.26 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=47.4
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||-|..+..++.+. +.+|+|+.+|++-.+.|++.++..+ ++++|+++..|.
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~g-l~~~v~v~~~D~ 121 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAG-LEDRVEVRLQDY 121 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST-SSSTEEEEES-G
T ss_pred CCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcC-CCCceEEEEeec
Confidence 4589999999999987777664 8999999999999999999999885 899999998874
No 145
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.13 E-value=2.7e-06 Score=83.33 Aligned_cols=89 Identities=24% Similarity=0.257 Sum_probs=57.1
Q ss_pred EecCCceeCCCCCcHhHHHHHHHHHccC--CCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHH
Q 014664 78 WIPDGQLCPTVPNRSNYIHWIEDLLSSN--IIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWA 155 (420)
Q Consensus 78 ~vp~g~LiPrvP~R~nyi~wi~dll~~~--~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A 155 (420)
+.+..-|-=.=+.|+.+|. .+++... ..|.. ......+|||+|||.|.+..-||. .+++|+|+|+++++++.|
T Consensus 53 ~g~~~~Lh~mn~~Rl~fi~--d~~~~~v~~~~p~~-k~~~g~~ilDvGCGgGLLSepLAr--lga~V~GID~s~~~V~vA 127 (282)
T KOG1270|consen 53 EGVRHPLHSMNQTRLPFIR--DDLRNRVNNHAPGS-KPLLGMKILDVGCGGGLLSEPLAR--LGAQVTGIDASDDMVEVA 127 (282)
T ss_pred ccchhhhhhccchhhhHHH--HHHHhcccccCCCc-cccCCceEEEeccCccccchhhHh--hCCeeEeecccHHHHHHH
Confidence 3333444333355666654 4444432 11110 001235799999999998887863 478999999999999999
Q ss_pred HHHHHHCCCCCCcEEE
Q 014664 156 EKNVKSNPHISELIEI 171 (420)
Q Consensus 156 ~~N~~~N~~l~~rI~l 171 (420)
++-...+|-++..|..
T Consensus 128 ~~h~~~dP~~~~~~~y 143 (282)
T KOG1270|consen 128 NEHKKMDPVLEGAIAY 143 (282)
T ss_pred HHhhhcCchhccccce
Confidence 9998877744443333
No 146
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.13 E-value=2.3e-06 Score=84.00 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=35.9
Q ss_pred CCCeEEEECCchhH----HHHHHHHhhc-----CCeeEEecCcHHHHHHHHHHH
Q 014664 115 DKVKGFDIGTGANC----IYPLLGASLL-----GWSFVGSDMTDVALEWAEKNV 159 (420)
Q Consensus 115 ~~~~vLDIGTGsG~----I~~~La~~~~-----~~~vvavDIs~~AL~~A~~N~ 159 (420)
.+.+|+|+|||+|- |+.+|+...+ +++|+|+|||+.||+.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45799999999995 4545554433 478999999999999999865
No 147
>PLN02366 spermidine synthase
Probab=98.12 E-value=0.00019 Score=72.35 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=46.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHC-CCC-CCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSN-PHI-SELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N-~~l-~~rI~l~~~d~ 176 (420)
+.+||+||+|.|.+...++.. +. .+++.+|||++.++.|++..... ..+ ..|++++.+|.
T Consensus 92 pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH
Confidence 568999999999987766643 54 68999999999999999987532 112 34899988874
No 148
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.12 E-value=1.1e-05 Score=82.37 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=42.8
Q ss_pred eEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
.+||+.||+|-+++.||.. ..+|+|+|+++.|++.|++|++.|+ +. +++++..+
T Consensus 199 ~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~-i~-n~~f~~~~ 252 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG-ID-NVEFIRGD 252 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--
T ss_pred cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC-CC-cceEEEee
Confidence 7999999999998888754 3589999999999999999999995 74 68998765
No 149
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.11 E-value=1.1e-05 Score=77.47 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=62.5
Q ss_pred CCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCC
Q 014664 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISE 167 (420)
Q Consensus 89 P~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~ 167 (420)
|++..|+.++..+. ...++|+|||+.|.=++.++...+ +.+++.+|++++..+.|++|.++-+ +.+
T Consensus 45 ~e~g~~L~~L~~~~------------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag-~~~ 111 (219)
T COG4122 45 PETGALLRLLARLS------------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG-VDD 111 (219)
T ss_pred hhHHHHHHHHHHhc------------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC-Ccc
Confidence 77888887776543 246899999999988888888888 7799999999999999999999995 888
Q ss_pred cEEEEEc
Q 014664 168 LIEIRKV 174 (420)
Q Consensus 168 rI~l~~~ 174 (420)
+|+++.+
T Consensus 112 ~i~~~~~ 118 (219)
T COG4122 112 RIELLLG 118 (219)
T ss_pred eEEEEec
Confidence 9998874
No 150
>PLN02476 O-methyltransferase
Probab=98.09 E-value=8.7e-06 Score=80.90 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=53.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||||||+|..++.++...+ +-+++++|+++++++.|++|++..+ +.++|+++.+|.
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG-l~~~I~li~GdA 179 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG-VSHKVNVKHGLA 179 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCcEEEEEcCH
Confidence 46899999999988888877665 5689999999999999999999995 889999998874
No 151
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.09 E-value=3.6e-07 Score=75.25 Aligned_cols=44 Identities=25% Similarity=0.342 Sum_probs=37.4
Q ss_pred EEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 014664 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (420)
Q Consensus 120 LDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~ 163 (420)
||||||+|.+...+....+..+++|+|+|+.+++.|++......
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~ 44 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG 44 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC
Confidence 79999999998888888889999999999999999998888763
No 152
>PRK05785 hypothetical protein; Provisional
Probab=98.08 E-value=1.2e-05 Score=77.22 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=35.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N 158 (420)
+.+|||||||+|-+...|+... +.+++|+|+|++|++.|++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc
Confidence 3589999999998887776654 67999999999999999753
No 153
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.03 E-value=3.5e-05 Score=81.20 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=42.5
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..++||||||+|.+...|+.. ..+++|+|+++.+++.|++ .++ ...++.++..|.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~---~~~-~~~~i~~~~~d~ 92 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNES---ING-HYKNVKFMCADV 92 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHH---Hhc-cCCceEEEEecc
Confidence 348999999999998887754 4589999999999987654 232 335688888764
No 154
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=1.3e-05 Score=84.84 Aligned_cols=90 Identities=24% Similarity=0.182 Sum_probs=66.9
Q ss_pred hhcCCcEEEecCCceeCCCCCcH--h-HHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEec
Q 014664 70 LHDHGLNWWIPDGQLCPTVPNRS--N-YIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSD 146 (420)
Q Consensus 70 ~~ffgl~~~vp~g~LiPrvP~R~--n-yi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavD 146 (420)
.+.-||.|.|+++-.-=. |+. + .-..|.|.+.. +....++|++||||.|++.|++. -.+|+|+|
T Consensus 346 E~l~~ltF~iSp~AFFQ~--Nt~~aevLys~i~e~~~l---------~~~k~llDv~CGTG~iglala~~--~~~ViGvE 412 (534)
T KOG2187|consen 346 ESLLGLTFRISPGAFFQT--NTSAAEVLYSTIGEWAGL---------PADKTLLDVCCGTGTIGLALARG--VKRVIGVE 412 (534)
T ss_pred eecCCeEEEECCchhhcc--CcHHHHHHHHHHHHHhCC---------CCCcEEEEEeecCCceehhhhcc--ccceeeee
Confidence 446688999999877765 331 1 12234444442 12368999999999999888654 46899999
Q ss_pred CcHHHHHHHHHHHHHCCCCCCcEEEEEc
Q 014664 147 MTDVALEWAEKNVKSNPHISELIEIRKV 174 (420)
Q Consensus 147 Is~~AL~~A~~N~~~N~~l~~rI~l~~~ 174 (420)
++++|++-|++|++.|+ ++ +.+|+.+
T Consensus 413 i~~~aV~dA~~nA~~Ng-is-Na~Fi~g 438 (534)
T KOG2187|consen 413 ISPDAVEDAEKNAQING-IS-NATFIVG 438 (534)
T ss_pred cChhhcchhhhcchhcC-cc-ceeeeec
Confidence 99999999999999995 65 5788776
No 155
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.01 E-value=1.2e-05 Score=77.79 Aligned_cols=140 Identities=26% Similarity=0.266 Sum_probs=92.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCC-eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~-~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~ 193 (420)
+..+|||-|||-|-- ++.+...++ .|+-+|.||..|++|+.|=-..+..+..|+++.+|..+
T Consensus 134 ~G~rVLDtC~GLGYt--Ai~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e--------------- 196 (287)
T COG2521 134 RGERVLDTCTGLGYT--AIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE--------------- 196 (287)
T ss_pred cCCEeeeeccCccHH--HHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH---------------
Confidence 346899999999954 444444566 99999999999999988764332234467888877321
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcc
Q 014664 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (420)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em 273 (420)
+...+ +++.||+|+--||=|+-. | |+
T Consensus 197 -------------------------------------~V~~~--~D~sfDaIiHDPPRfS~A------------g---eL 222 (287)
T COG2521 197 -------------------------------------VVKDF--DDESFDAIIHDPPRFSLA------------G---EL 222 (287)
T ss_pred -------------------------------------HHhcC--CccccceEeeCCCccchh------------h---hH
Confidence 11111 467899999999987632 2 11
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC-------cHHHHHHHHHHcCCceEEEEEecCC
Q 014664 274 VCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS-------NLKFLISKLRKVGVTIVKTTEFVQG 333 (420)
Q Consensus 274 ~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~-------~l~~l~~~L~~~g~~~v~~~e~~qG 333 (420)
. ..+||+.+. .+++++|-..--+|.+. -.+.+.+.|++.||..|+..+..-|
T Consensus 223 Y----seefY~El~----RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~g 281 (287)
T COG2521 223 Y----SEEFYRELY----RILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALG 281 (287)
T ss_pred h----HHHHHHHHH----HHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccc
Confidence 1 356777654 45666654334444332 3467899999999988877664433
No 156
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.99 E-value=7.2e-05 Score=71.39 Aligned_cols=88 Identities=20% Similarity=0.160 Sum_probs=59.5
Q ss_pred CcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHH
Q 014664 74 GLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVAL 152 (420)
Q Consensus 74 gl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL 152 (420)
+..+.|..++-+.. | ..+.++.++|.. ....+|||||||||-...+|+..... -+|+++|+++..+
T Consensus 44 d~~l~i~~~~~is~-P---~~~a~~l~~L~l---------~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~ 110 (209)
T PF01135_consen 44 DRPLPIGCGQTISA-P---SMVARMLEALDL---------KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA 110 (209)
T ss_dssp SS-EEEETTEEE---H---HHHHHHHHHTTC----------TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH
T ss_pred CCCeeecceeechH-H---HHHHHHHHHHhc---------CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH
Confidence 44566777777766 3 334444555542 12458999999999887777655432 3799999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEEEccC
Q 014664 153 EWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 153 ~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.|++|++..+ + .+|.++.+|.
T Consensus 111 ~~A~~~l~~~~-~-~nv~~~~gdg 132 (209)
T PF01135_consen 111 ERARRNLARLG-I-DNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHHT-T-HSEEEEES-G
T ss_pred HHHHHHHHHhc-c-CceeEEEcch
Confidence 99999999874 4 4799988873
No 157
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.97 E-value=0.00011 Score=72.11 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=49.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcC------CeeEEecCcHHHHHHHHHHHHHCCCCCCc--EEEEEcc
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLG------WSFVGSDMTDVALEWAEKNVKSNPHISEL--IEIRKVD 175 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~------~~vvavDIs~~AL~~A~~N~~~N~~l~~r--I~l~~~d 175 (420)
...++||+|+|||-|+..+...... .+|+.+||+|++|+.+++-+++-+ +.+. +.++.+|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~-l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP-LKASSRVEWVEGD 167 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC-CCcCCceEEEeCC
Confidence 3479999999999998887765544 789999999999999999997764 6554 7777766
No 158
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.95 E-value=2.6e-05 Score=79.17 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=47.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
...|||+|||+|.+. +.+++-...+|+|+|-+.-| +.|++.+..|+ +++.|+++++..
T Consensus 61 dK~VlDVGcGtGILS-~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~-~~~ii~vi~gkv 118 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILS-MFAAKAGARKVYAVEASSIA-DFARKIVKDNG-LEDVITVIKGKV 118 (346)
T ss_pred CCEEEEcCCCccHHH-HHHHHhCcceEEEEechHHH-HHHHHHHHhcC-ccceEEEeecce
Confidence 468999999999664 44444445689999999888 99999999995 999999998864
No 159
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.94 E-value=1.6e-05 Score=73.23 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=39.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEccC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-HISELIEIRKVDN 176 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~-~l~~rI~l~~~d~ 176 (420)
...+||+||||+|..++.++......+|+++|.++ +++..+.|++.|+ ....++.+..-+.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~W 106 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDW 106 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--T
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEe
Confidence 45799999999998877666554678999999999 9999999999984 1345677666554
No 160
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.91 E-value=0.00024 Score=70.95 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=48.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..++||+|||+|.....|+.+.+ +.+++|+|+|+++|+.|++++.... -..+|.++.+|..
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-p~~~v~~i~gD~~ 125 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-PQLEVHGICADFT 125 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-CCceEEEEEEccc
Confidence 35799999999998888887766 6899999999999999999987531 1235777777743
No 161
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.87 E-value=0.00016 Score=68.91 Aligned_cols=57 Identities=25% Similarity=0.196 Sum_probs=47.9
Q ss_pred EEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 119 GFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 119 vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.||||-.|-++..|..+..--+++|+||++..++.|++|++.++ +.++|+++.+|.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~-l~~~i~~rlgdG 57 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG-LEDRIEVRLGDG 57 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--TTTEEEEE-SG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CcccEEEEECCc
Confidence 689999999998888766554589999999999999999999995 999999999873
No 162
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00011 Score=70.30 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=48.5
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+||+||||||--+..|+. +-+ +|+.+|++++-.+.|++|++..+ +.+ |.++++|..
T Consensus 73 g~~VLEIGtGsGY~aAvla~-l~~-~V~siEr~~~L~~~A~~~L~~lg-~~n-V~v~~gDG~ 130 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLAR-LVG-RVVSIERIEELAEQARRNLETLG-YEN-VTVRHGDGS 130 (209)
T ss_pred CCeEEEECCCchHHHHHHHH-HhC-eEEEEEEcHHHHHHHHHHHHHcC-CCc-eEEEECCcc
Confidence 46899999999987666654 334 99999999999999999999985 654 999999853
No 163
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.83 E-value=3.7e-05 Score=79.45 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=49.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
+.++||+.||+|..++.++.+.++ .+|+++|+|++|++.+++|++.|+ +. .+++++.|.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-~~-~~~v~~~Da 104 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-VE-NIEVPNEDA 104 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-CC-cEEEEchhH
Confidence 368999999999999888877544 589999999999999999999995 54 577777663
No 164
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.80 E-value=6.4e-05 Score=71.18 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=42.0
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
.++||+|||.|.+...|+.+. -+++++|+++.|++.|++.+... ..|+++..+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dv 98 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGL----PHVEWIQADV 98 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-T
T ss_pred ceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcC
Confidence 589999999999988887664 37999999999999999988753 3699998875
No 165
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00058 Score=69.70 Aligned_cols=143 Identities=19% Similarity=0.214 Sum_probs=97.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEc-cCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKV-DNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~-d~~~~~p~~~~~~~~~~~~~ 194 (420)
...+||==||+|.|. +-+.+-+.+++|+|||.++++-|+.|++..+ +++ ..++.. |...
T Consensus 198 G~~vlDPFcGTGgiL--iEagl~G~~viG~Did~~mv~gak~Nl~~y~-i~~-~~~~~~~Da~~---------------- 257 (347)
T COG1041 198 GELVLDPFCGTGGIL--IEAGLMGARVIGSDIDERMVRGAKINLEYYG-IED-YPVLKVLDATN---------------- 257 (347)
T ss_pred CCEeecCcCCccHHH--HhhhhcCceEeecchHHHHHhhhhhhhhhhC-cCc-eeEEEeccccc----------------
Confidence 348999999999874 4455779999999999999999999999884 554 444444 4321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCccc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMV 274 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~ 274 (420)
+ ++ ++..||-|+|-|||-.+...+.. .
T Consensus 258 -------------------------------------l-pl--~~~~vdaIatDPPYGrst~~~~~---------~---- 284 (347)
T COG1041 258 -------------------------------------L-PL--RDNSVDAIATDPPYGRSTKIKGE---------G---- 284 (347)
T ss_pred -------------------------------------C-CC--CCCccceEEecCCCCcccccccc---------c----
Confidence 0 11 22369999999999876432210 0
Q ss_pred ccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEe-cCCCeeeEEE
Q 014664 275 CSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF-VQGQTCRWGL 340 (420)
Q Consensus 275 ~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~-~qG~t~Rw~l 340 (420)
=...+.+.++.+...++.+||+.+-.. ..-...+.+.++..+....+ ++|.-.|.+.
T Consensus 285 ----l~~Ly~~~le~~~evLk~gG~~vf~~p-----~~~~~~~~~~~f~v~~~~~~~~H~sLtR~i~ 342 (347)
T COG1041 285 ----LDELYEEALESASEVLKPGGRIVFAAP-----RDPRHELEELGFKVLGRFTMRVHGSLTRVIY 342 (347)
T ss_pred ----HHHHHHHHHHHHHHHhhcCcEEEEecC-----CcchhhHhhcCceEEEEEEEeecCceEEEEE
Confidence 245788899988899999998744433 22334556778876655444 4444456443
No 166
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.76 E-value=0.00012 Score=71.70 Aligned_cols=60 Identities=12% Similarity=0.114 Sum_probs=52.6
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..++|+|||++|.-++.++...+ +.+++.+|++++..+.|++|++..+ +.++|+++.++.
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag-~~~~I~~~~G~a 140 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG-VAHKIDFREGPA 140 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CCCceEEEeccH
Confidence 45899999999987777776664 6799999999999999999999985 889999998874
No 167
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.75 E-value=9.6e-05 Score=69.46 Aligned_cols=60 Identities=12% Similarity=0.044 Sum_probs=50.4
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
...++||+-+|||++++-.+++ ...+++.+|.|.+|+...++|++..+ +..+.+++..|.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~-~~~~~~~~~~da 102 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALG-LEGEARVLRNDA 102 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC-CccceEEEeecH
Confidence 3569999999999998766544 45689999999999999999999874 778888888773
No 168
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.73 E-value=0.0001 Score=64.43 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=49.3
Q ss_pred eEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
.++|||||.|.+...++...++++++++|.++.+++.+++|++.|+ +. ++.++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-~~-~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-LP-NVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-CC-cEEEEEeee
Confidence 3899999999988888777778899999999999999999999985 64 488887754
No 169
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.71 E-value=0.00013 Score=77.23 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=45.9
Q ss_pred CCeEEEECCchhHHHHHHHHh---h-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGAS---L-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~---~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
...|+|+|||+|.+....+.. . ...+|+|+|.++.|....++-++.|+ ++++|+++++|..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-w~~~V~vi~~d~r 251 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-WGDKVTVIHGDMR 251 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-TTTTEEEEES-TT
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-CCCeEEEEeCccc
Confidence 468999999999775333222 1 24699999999999988888878884 9999999999864
No 170
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.70 E-value=6.3e-05 Score=72.22 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=45.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
...+|.|||||.|--.-+|+.++|++.++|+|-|++||+-|+. +.+ ..+|..+|..
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~---rlp----~~~f~~aDl~ 85 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ---RLP----DATFEEADLR 85 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH---hCC----CCceecccHh
Confidence 3568999999999988899999999999999999999999843 322 3567666643
No 171
>PLN02823 spermine synthase
Probab=97.69 E-value=0.0011 Score=67.65 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=46.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCC-C-CCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-H-ISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~-~-l~~rI~l~~~d~ 176 (420)
+.+||-||+|.|.+...+....+..+++++|||++.+++|++....+. . -..+++++..|.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da 166 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA 166 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh
Confidence 468999999999886655544445689999999999999999876431 1 136888888874
No 172
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00015 Score=70.61 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=42.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHH
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~ 161 (420)
.+..+|||||-+|.+.+.++..+..-.|+|+|||+.-++.|++|++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 45789999999999999998887777899999999999999999974
No 173
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.66 E-value=0.0021 Score=60.25 Aligned_cols=148 Identities=18% Similarity=0.166 Sum_probs=97.0
Q ss_pred hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEE
Q 014664 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIR 172 (420)
Q Consensus 93 nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~ 172 (420)
-+..++.|-|... +... ....+++|||||+|.=++.|+..+|+++++.+|-...-+..-+.-+...+ |+ +++++
T Consensus 30 ~~~~Hi~DSL~~~--~~~~--~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~-L~-nv~v~ 103 (184)
T PF02527_consen 30 IWERHILDSLALL--PFLP--DFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG-LS-NVEVI 103 (184)
T ss_dssp HHHHHHHHHHGGG--GCS---CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--S-SEEEE
T ss_pred HHHHHHHHHHHhh--hhhc--cCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC-CC-CEEEE
Confidence 3444666665532 1111 11227999999999888888888999999999999999998888888774 75 58888
Q ss_pred EccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcc
Q 014664 173 KVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFF 252 (420)
Q Consensus 173 ~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~ 252 (420)
.....+ ....++||+++|=
T Consensus 104 ~~R~E~---------------------------------------------------------~~~~~~fd~v~aR---- 122 (184)
T PF02527_consen 104 NGRAEE---------------------------------------------------------PEYRESFDVVTAR---- 122 (184)
T ss_dssp ES-HHH---------------------------------------------------------TTTTT-EEEEEEE----
T ss_pred Eeeecc---------------------------------------------------------cccCCCccEEEee----
Confidence 765210 0124689999861
Q ss_pred cCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcC--cHHHHHHHHHHcCCceEEEEEe
Q 014664 253 ESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKS--NLKFLISKLRKVGVTIVKTTEF 330 (420)
Q Consensus 253 ~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~--~l~~l~~~L~~~g~~~v~~~e~ 330 (420)
|++ . +..+++-+..+++++|.+..|-|+.. .+++....++..+.....+.++
T Consensus 123 ------------Av~-----------~---l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~~ 176 (184)
T PF02527_consen 123 ------------AVA-----------P---LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPEF 176 (184)
T ss_dssp ------------SSS-----------S---HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEEE
T ss_pred ------------hhc-----------C---HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeeccc
Confidence 111 1 44666667778888998889999542 3455566677777777777666
Q ss_pred cCC
Q 014664 331 VQG 333 (420)
Q Consensus 331 ~qG 333 (420)
...
T Consensus 177 ~~~ 179 (184)
T PF02527_consen 177 ELP 179 (184)
T ss_dssp E-T
T ss_pred cCC
Confidence 433
No 174
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.64 E-value=9.8e-05 Score=69.66 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=39.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|||+|||.|.+...|.. ..+.+.+|+|||++.+..|.+ ++ +.++++|..
T Consensus 14 gsrVLDLGCGdG~LL~~L~~-~k~v~g~GvEid~~~v~~cv~----rG-----v~Viq~Dld 65 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKD-EKQVDGYGVEIDPDNVAACVA----RG-----VSVIQGDLD 65 (193)
T ss_pred CCEEEecCCCchHHHHHHHH-hcCCeEEEEecCHHHHHHHHH----cC-----CCEEECCHH
Confidence 35899999999987655544 468999999999998766543 22 567778753
No 175
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.61 E-value=0.00062 Score=72.76 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=42.5
Q ss_pred CeEEEECCchhHHHHHHHHhhc----CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 117 VKGFDIGTGANCIYPLLGASLL----GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~----~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
.+|.|-+||||......+.... ...++|.|+++..+.+|+.|.-.|+ +...+.+...|
T Consensus 188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg-i~~~~~i~~~d 249 (489)
T COG0286 188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG-IEGDANIRHGD 249 (489)
T ss_pred CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC-CCccccccccc
Confidence 3899999999976444333221 3679999999999999999999885 54334444444
No 176
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.58 E-value=0.00019 Score=72.83 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=47.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
....|||+|||||.+ ...|+.-...+|+|+|-| ++.+.|++-++.| ++.+||.++.+..
T Consensus 177 ~~kiVlDVGaGSGIL-S~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N-~~~~rItVI~GKi 235 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGIL-SFFAAQAGAKKVYAVEAS-EMAQYARKLVASN-NLADRITVIPGKI 235 (517)
T ss_pred CCcEEEEecCCccHH-HHHHHHhCcceEEEEehh-HHHHHHHHHHhcC-CccceEEEccCcc
Confidence 446899999999966 445555455689999987 5779999999999 5999999998864
No 177
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.56 E-value=0.00037 Score=66.84 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=34.2
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE 156 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~ 156 (420)
..+|||+|||.|--+..||. .+++|+|+|+++.|++.|.
T Consensus 38 ~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHH
Confidence 35899999999988877874 5899999999999999874
No 178
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00038 Score=68.58 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=45.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
...||+||.|.|++...|+.+ ..+|+|+|||+..++.-++.... .++++++++|..
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~----~~n~~vi~~DaL 86 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP----YDNLTVINGDAL 86 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc----ccceEEEeCchh
Confidence 468999999999998777654 45799999999999988877652 357999999854
No 179
>PTZ00146 fibrillarin; Provisional
Probab=97.49 E-value=0.0077 Score=60.51 Aligned_cols=57 Identities=9% Similarity=-0.077 Sum_probs=38.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|||+|||+|.....++.... .-.|+|+|+++++++....-++.. .+|.++..|.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da 190 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDA 190 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCc
Confidence 35899999999998777776553 358999999998664443333221 2366666664
No 180
>PRK04148 hypothetical protein; Provisional
Probab=97.48 E-value=0.00033 Score=62.65 Aligned_cols=51 Identities=22% Similarity=0.159 Sum_probs=39.5
Q ss_pred CCeEEEECCchhH-HHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~-I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
+.+++|||||+|. ++..|+ ..+..|+|+|+++.+++.|+++. +.++..|..
T Consensus 17 ~~kileIG~GfG~~vA~~L~--~~G~~ViaIDi~~~aV~~a~~~~---------~~~v~dDlf 68 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLK--ESGFDVIVIDINEKAVEKAKKLG---------LNAFVDDLF 68 (134)
T ss_pred CCEEEEEEecCCHHHHHHHH--HCCCEEEEEECCHHHHHHHHHhC---------CeEEECcCC
Confidence 4689999999995 766665 34789999999999988886652 456667754
No 181
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.41 E-value=0.00062 Score=66.70 Aligned_cols=71 Identities=17% Similarity=0.123 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEE
Q 014664 92 SNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEI 171 (420)
Q Consensus 92 ~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l 171 (420)
.+.+..|.+.+... ....|||||.|.|.+.-.|+... .+++++|+|+..++..++....+ .++++
T Consensus 16 ~~~~~~Iv~~~~~~---------~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~----~~~~v 80 (262)
T PF00398_consen 16 PNIADKIVDALDLS---------EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASN----PNVEV 80 (262)
T ss_dssp HHHHHHHHHHHTCG---------TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTC----SSEEE
T ss_pred HHHHHHHHHhcCCC---------CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhc----cccee
Confidence 35667777776531 35689999999999988886554 79999999999999988876533 57999
Q ss_pred EEccCC
Q 014664 172 RKVDNS 177 (420)
Q Consensus 172 ~~~d~~ 177 (420)
+.+|..
T Consensus 81 i~~D~l 86 (262)
T PF00398_consen 81 INGDFL 86 (262)
T ss_dssp EES-TT
T ss_pred eecchh
Confidence 999854
No 182
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.39 E-value=0.00041 Score=66.27 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=34.4
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~ 157 (420)
..++||+|||.|--+..||. .++.|+|+|+|+.|++.|..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFA 74 (213)
T ss_pred CCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHH
Confidence 35899999999988877874 48999999999999998643
No 183
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.37 E-value=0.0038 Score=60.19 Aligned_cols=128 Identities=20% Similarity=0.198 Sum_probs=93.3
Q ss_pred eEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccc
Q 014664 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESN 197 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~ 197 (420)
++.||||-.+-++..|....+...++++||++..++.|.+|++.++ +.++|+++.+|...
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~-l~~~i~vr~~dgl~------------------- 78 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN-LSERIDVRLGDGLA------------------- 78 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC-CcceEEEeccCCcc-------------------
Confidence 4999999999887777766677799999999999999999999995 99999999887431
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccccC
Q 014664 198 MDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSG 277 (420)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~G 277 (420)
. +..+..+|.|+- ++.
T Consensus 79 ------------------------------------~-l~~~d~~d~ivI----------AGM----------------- 94 (226)
T COG2384 79 ------------------------------------V-LELEDEIDVIVI----------AGM----------------- 94 (226)
T ss_pred ------------------------------------c-cCccCCcCEEEE----------eCC-----------------
Confidence 1 112334555541 111
Q ss_pred chHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCC
Q 014664 278 GERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQG 333 (420)
Q Consensus 278 Gel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG 333 (420)
|-..|+.|+++-...++...- ..+-.-.+...|.+.|.+.++. ++.-..+..
T Consensus 95 -GG~lI~~ILee~~~~l~~~~r--lILQPn~~~~~LR~~L~~~~~~-I~~E~ileE 146 (226)
T COG2384 95 -GGTLIREILEEGKEKLKGVER--LILQPNIHTYELREWLSANSYE-IKAETILEE 146 (226)
T ss_pred -cHHHHHHHHHHhhhhhcCcce--EEECCCCCHHHHHHHHHhCCce-eeeeeeecc
Confidence 224588999998887766532 3455478999999999999986 333333444
No 184
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.35 E-value=0.00078 Score=66.73 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=47.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
...||++|-|+|.+...|. ..+.+|+|+|+|+.++..-++-++..+ .+.+.+++.+|.
T Consensus 59 tD~VLEvGPGTGnLT~~lL--e~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~ 116 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLL--EAGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDF 116 (315)
T ss_pred CCEEEEeCCCCCHHHHHHH--HhcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEeccc
Confidence 4589999999998765554 347899999999999999998888765 678899988874
No 185
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.32 E-value=0.00033 Score=67.60 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=34.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~ 157 (420)
...-|||||||||.-+..|. ..+..++|+|||+.||+.|.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~--~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLS--DSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheec--cCCceEEeecCCHHHHHHHHH
Confidence 46789999999997766663 356789999999999999987
No 186
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.25 E-value=0.00041 Score=67.58 Aligned_cols=57 Identities=23% Similarity=0.469 Sum_probs=40.9
Q ss_pred CCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH
Q 014664 86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 86 PrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~ 157 (420)
|..| ..|+.++...+ .+. ..++|+|||+|--+..++ ..+ -+|+|+|+++.+|++|++
T Consensus 17 P~YP-----tdw~~~ia~~~-------~~h-~~a~DvG~G~Gqa~~~ia-e~~-k~VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 17 PSYP-----TDWFKKIASRT-------EGH-RLAWDVGTGNGQAARGIA-EHY-KEVIATDVSEAMLKVAKK 73 (261)
T ss_pred CCCc-----HHHHHHHHhhC-------CCc-ceEEEeccCCCcchHHHH-Hhh-hhheeecCCHHHHHHhhc
Confidence 5556 57888887643 122 389999999995444443 444 479999999999998864
No 187
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.21 E-value=0.0017 Score=61.17 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=49.7
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+||||||.|--...+|...|++.++|+|+....+..|...+...+ + .++.++..|..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-l-~Nv~~~~~da~ 77 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-L-KNVRFLRGDAR 77 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-T-SSEEEEES-CT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-c-cceEEEEccHH
Confidence 38999999999988889999999999999999999999999998874 5 47999988743
No 188
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.17 E-value=0.00092 Score=67.17 Aligned_cols=56 Identities=13% Similarity=-0.079 Sum_probs=47.9
Q ss_pred CeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+||.+||.|.-...++...+ +.+|+|+|+|++|++.|++.++. .+++++++.+.
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f 77 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNF 77 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCH
Confidence 4899999999998888887765 67999999999999999988753 35899998874
No 189
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.11 E-value=0.0055 Score=62.52 Aligned_cols=177 Identities=14% Similarity=0.200 Sum_probs=91.2
Q ss_pred hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHH-HHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCC--------
Q 014664 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCI-YPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP-------- 163 (420)
Q Consensus 93 nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I-~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~-------- 163 (420)
++=-||...|-....+.........+|||||||-|.- .-... ..-..++|+||+.++++.|++-.+...
T Consensus 40 ~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~--~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~ 117 (331)
T PF03291_consen 40 NFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQK--AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQY 117 (331)
T ss_dssp HHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHH--TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTS
T ss_pred HHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHh--cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccc
Confidence 3444766665432222111112457999999998863 22221 122479999999999999998773210
Q ss_pred CCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccC-CCCcE
Q 014664 164 HISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVR-DGEQF 242 (420)
Q Consensus 164 ~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~-~~~~F 242 (420)
...-...++.+|... .. +..+.. ...+|
T Consensus 118 ~~~f~a~f~~~D~f~--------------------------------------------------~~-l~~~~~~~~~~F 146 (331)
T PF03291_consen 118 RFDFIAEFIAADCFS--------------------------------------------------ES-LREKLPPRSRKF 146 (331)
T ss_dssp EECCEEEEEESTTCC--------------------------------------------------SH-HHCTSSSTTS-E
T ss_pred cccchhheecccccc--------------------------------------------------ch-hhhhccccCCCc
Confidence 011123444444221 00 111111 23589
Q ss_pred EEEEECCCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHH---
Q 014664 243 DFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRK--- 319 (420)
Q Consensus 243 D~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~--- 319 (420)
|+|-|-==++ -+|. -.+-.+.|++....+++++|.|.-.+ -....|.+.|++
T Consensus 147 DvVScQFalH-----------Y~Fe-----------se~~ar~~l~Nvs~~Lk~GG~FIgT~---~d~~~i~~~l~~~~~ 201 (331)
T PF03291_consen 147 DVVSCQFALH-----------YAFE-----------SEEKARQFLKNVSSLLKPGGYFIGTT---PDSDEIVKRLREKKS 201 (331)
T ss_dssp EEEEEES-GG-----------GGGS-----------SHHHHHHHHHHHHHTEEEEEEEEEEE---E-HHHHHCCHHC-EE
T ss_pred ceeehHHHHH-----------HhcC-----------CHHHHHHHHHHHHHhcCCCCEEEEEe---cCHHHHHHHHHhhcc
Confidence 9999952222 1221 12346789999999999999764333 355677777776
Q ss_pred ------cCCceEEEEEecCCCeeeEEEEEeecCc
Q 014664 320 ------VGVTIVKTTEFVQGQTCRWGLAWSFVPP 347 (420)
Q Consensus 320 ------~g~~~v~~~e~~qG~t~Rw~lAWsF~~~ 347 (420)
.|-..+++.-+.......|+....|..+
T Consensus 202 ~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~ 235 (331)
T PF03291_consen 202 NSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLE 235 (331)
T ss_dssp ECCCSCSETSSEEEEESCCSS--CTTEEEEEEET
T ss_pred cccccccCCccEEEEecccCCCCCCCcEEEEEec
Confidence 1223344433333244667777777543
No 190
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.07 E-value=0.0052 Score=65.50 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=92.4
Q ss_pred CCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
..+|||+|+|.|.=...|+..+.+ -.++|.|+++.-++..++|+++.+ +. .|.+...|...
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-~~-nv~v~~~D~~~---------------- 175 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-VS-NVALTHFDGRV---------------- 175 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeCchhh----------------
Confidence 458999999999988888877653 589999999999999999999985 64 46776655321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccc-cCCCCcccCCCCCcc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEA-GLNPKTSCGGTPEEM 273 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea-~~eP~~a~~G~~~Em 273 (420)
+... ..+.||.|++-+|= |.+.. ..+|.....-+...
T Consensus 176 -------------------------------------~~~~--~~~~fD~ILvDaPC--SG~G~~rk~p~~~~~~s~~~- 213 (470)
T PRK11933 176 -------------------------------------FGAA--LPETFDAILLDAPC--SGEGTVRKDPDALKNWSPES- 213 (470)
T ss_pred -------------------------------------hhhh--chhhcCeEEEcCCC--CCCcccccCHHHhhhCCHHH-
Confidence 0000 12469999999994 33322 22343322111110
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 014664 274 VCSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (420)
Q Consensus 274 ~~~GGel~Fv~riI~eS~~l~~~~~w~---tsmvgk~~~l~~l~~~L~~~g 321 (420)
+.. =...=++|++.+..+++++|.. |+-+...++-.-+...|++.+
T Consensus 214 v~~--l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 214 NLE--IAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred HHH--HHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 000 0123356888888988888865 344554555566666777754
No 191
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.07 E-value=0.0019 Score=56.63 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=31.6
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHH
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW 154 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~ 154 (420)
...+|||||||.|.....++.. +.+++|+|+++.+++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK 59 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh
Confidence 3569999999999887767433 4599999999999988
No 192
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.02 E-value=0.0025 Score=56.67 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=46.4
Q ss_pred CCCeEEEECCchhHHHHHHHHh----hcCCeeEEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEc
Q 014664 115 DKVKGFDIGTGANCIYPLLGAS----LLGWSFVGSDMTDVALEWAEKNVKSNP-HISELIEIRKV 174 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~----~~~~~vvavDIs~~AL~~A~~N~~~N~-~l~~rI~l~~~ 174 (420)
....|+|+|+|-|-++..|+.. .++++|+|+|.++..++.|.+..+... .+..++.+...
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 4578999999999998888872 278999999999999999999887652 13344554444
No 193
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.01 E-value=0.0028 Score=62.14 Aligned_cols=117 Identities=20% Similarity=0.219 Sum_probs=73.7
Q ss_pred CCCCCHHHHHhhCCCcccceeccCCCCccccCCCHHHHHHHHHHHhhhcCCcEEEecCCceeCCCCCcH-hHHHHHHHHH
Q 014664 24 ENPPDFALLASLYPSFEPFVFYSRDGRPRIDWTDFNATRELTRVLLLHDHGLNWWIPDGQLCPTVPNRS-NYIHWIEDLL 102 (420)
Q Consensus 24 ~~~~dF~~La~~yP~l~~~v~~~~~g~~~IDf~d~~a~r~Lt~aLL~~ffgl~~~vp~g~LiPrvP~R~-nyi~wi~dll 102 (420)
..+||.++|.++. .+ ..+..|+++++...+.+|.....-. +|+ ++-+....+.
T Consensus 47 ~~~p~~~~ll~~l---~~----------a~~~~D~e~~~~~~r~lL~~HaST~-------------ERl~~Ld~fY~~if 100 (251)
T PF07091_consen 47 EGRPDYDALLRKL---QE----------ALDVGDPEAIRAWCRRLLAGHASTR-------------ERLPNLDEFYDEIF 100 (251)
T ss_dssp SS---HHHHHHHH---HH----------HHCTTHHHHHHHHHHHHHHTSHHHH-------------CCGGGHHHHHHHHC
T ss_pred cCCCCHHHHHHHH---Hh----------ccCcCCHHHHHHHHHHHHhhccchh-------------hhhhhHHHHHHHHH
Confidence 4677788777663 21 4678899999999998887543321 222 2334444444
Q ss_pred ccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 103 SSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 103 ~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
... +.+.+|+|||||.+-++.-.....++..++|+|||..+++.-..-+...+ .. .++...|..
T Consensus 101 ~~~--------~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~--~~~~v~Dl~ 164 (251)
T PF07091_consen 101 GRI--------PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VP--HDARVRDLL 164 (251)
T ss_dssp CCS-----------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--C--EEEEEE-TT
T ss_pred hcC--------CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CC--cceeEeeee
Confidence 421 12568999999999887655555567899999999999999998887763 44 445555644
No 194
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.90 E-value=0.0082 Score=57.65 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=43.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE-EEEcc
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE-IRKVD 175 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~-l~~~d 175 (420)
.+..+|++|||+|.-...+- -.|..+|+++|-++.+-++|.+.++.+.. .+++ ++.++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~--~~~~~fvva~ 134 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKP--LQVERFVVAD 134 (252)
T ss_pred CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccC--cceEEEEeec
Confidence 45678999999997643321 12567999999999999999999988742 3455 66665
No 195
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.83 E-value=0.0013 Score=62.12 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=46.0
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
....|+|+|||.++ ..|++. .-+|+|+|.||.-.++|.+|+.-++ + .+++++.+|..
T Consensus 34 d~~~DLGaGsGiLs-~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g-~-~n~evv~gDA~ 90 (252)
T COG4076 34 DTFADLGAGSGILS-VVAAHA-AERVIAIEKDPKRARLAEENLHVPG-D-VNWEVVVGDAR 90 (252)
T ss_pred hceeeccCCcchHH-HHHHhh-hceEEEEecCcHHHHHhhhcCCCCC-C-cceEEEecccc
Confidence 47899999999764 444443 5689999999999999999997774 4 57999999854
No 196
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.74 E-value=0.0023 Score=61.57 Aligned_cols=69 Identities=23% Similarity=0.234 Sum_probs=43.6
Q ss_pred CCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcC--CeeEEecCcHHHHHHHHHHHHH
Q 014664 86 PTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKS 161 (420)
Q Consensus 86 PrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~--~~vvavDIs~~AL~~A~~N~~~ 161 (420)
|..|-|+.-.. .+..|... .++.+.++-|=|||+|-+.-.|+.-..+ ..++|+|||+++|++|++|+..
T Consensus 29 p~FPVRLAsEi-~qR~l~~l------~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 29 PAFPVRLASEI-FQRALHYL------EGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp ----HHHHHHH-HHHHHCTS------SS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CCccHHHHHHH-HHHHHHhh------cCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 55676755432 23333321 1246789999999999887777764443 4799999999999999999964
No 197
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.72 E-value=0.0032 Score=63.05 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=34.7
Q ss_pred CCCeEEEECCchh----HHHHHHHHhhc----CCeeEEecCcHHHHHHHHHHH
Q 014664 115 DKVKGFDIGTGAN----CIYPLLGASLL----GWSFVGSDMTDVALEWAEKNV 159 (420)
Q Consensus 115 ~~~~vLDIGTGsG----~I~~~La~~~~----~~~vvavDIs~~AL~~A~~N~ 159 (420)
.+++|+..||.|| -|+.+|....+ +++|+|+|||+.+|+.|++-+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 3589999999999 34444443222 478999999999999999864
No 198
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.65 E-value=0.0094 Score=56.70 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=43.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
...+|||+|+|||..++.- ++.....++++|++|......+.|++.|+ . .|.+...|
T Consensus 79 rgkrVLd~gagsgLvaIAa-a~aGA~~v~a~d~~P~~~~ai~lNa~ang-v--~i~~~~~d 135 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAA-ARAGAAEVVAADIDPWLEQAIRLNAAANG-V--SILFTHAD 135 (218)
T ss_pred ccceeeecccccChHHHHH-HHhhhHHHHhcCCChHHHHHhhcchhhcc-c--eeEEeecc
Confidence 3568999999999765433 33334589999999999999999999995 3 46666554
No 199
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.65 E-value=0.0089 Score=57.91 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=34.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~ 157 (420)
..+||+.|||.|--...|+. .+++|+|+|+|+.|++.+.+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHH
Confidence 35899999999988777765 47899999999999999865
No 200
>PRK10742 putative methyltransferase; Provisional
Probab=96.63 E-value=0.009 Score=58.67 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=47.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHC------CC-CCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN------PH-ISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N------~~-l~~rI~l~~~d~ 176 (420)
..+|||+-+|+|..+..++.+ +.+|+++|.++.+..+.+.|+++- +. +..+|+++++|.
T Consensus 89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 348999999999998888765 778999999999999999999873 11 225688877763
No 201
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.53 E-value=0.0083 Score=58.14 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=51.8
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+||||||.|--.+-+|.+.|.+.++|+||....+..|.+-+...+ +. +|.++..|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-l~-Nlri~~~DA 107 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-LK-NLRLLCGDA 107 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-CC-cEEEEcCCH
Confidence 58999999999988899999999999999999999999999998874 64 688888874
No 202
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.38 E-value=0.032 Score=54.43 Aligned_cols=62 Identities=16% Similarity=-0.014 Sum_probs=43.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCC--CCCCcEEEEEccC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--HISELIEIRKVDN 176 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~--~l~~rI~l~~~d~ 176 (420)
.+.+||=||-|.|.+.-.+....+..+++++|||+..++.|++-..... .-..|++++..|.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 3568999999999876655533334689999999999999998654321 0135899988873
No 203
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.38 E-value=0.0076 Score=61.74 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=50.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
+..|+|+=+|-|-+++.+|.. ...+|+|+||+|.|+++.++|++.|+ ++++|..+.+|..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~-v~~~v~~i~gD~r 248 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNK-VEGRVEPILGDAR 248 (341)
T ss_pred CCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcC-ccceeeEEeccHH
Confidence 458999999999887666543 33449999999999999999999995 9999999999854
No 204
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.34 E-value=0.0063 Score=63.86 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=50.7
Q ss_pred CCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 114 ~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
+.++.+||||||+|.+. ++|.+...-.|+|+|+=.-+.++|++...+|+ .+++|.++...
T Consensus 65 ~gkv~vLdigtGTGLLS-mMAvragaD~vtA~EvfkPM~d~arkI~~kng-~SdkI~vInkr 124 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLS-MMAVRAGADSVTACEVFKPMVDLARKIMHKNG-MSDKINVINKR 124 (636)
T ss_pred CceEEEEEccCCccHHH-HHHHHhcCCeEEeehhhchHHHHHHHHHhcCC-Cccceeeeccc
Confidence 45678999999999764 55555555679999999999999999999996 99999998654
No 205
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.33 E-value=0.0021 Score=62.02 Aligned_cols=58 Identities=16% Similarity=0.032 Sum_probs=47.7
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..++|.=||.|.-.+..+.+ ...|+++||||.-+.+|+.|++-.+ +.+||+|+++|..
T Consensus 96 ~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYG-I~~rItFI~GD~l 153 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYG-VPDRITFICGDFL 153 (263)
T ss_pred chhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeec-CCceeEEEechHH
Confidence 46778777777655566544 5589999999999999999999995 9999999999854
No 206
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.14 Score=52.78 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=95.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcC--CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQ 193 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~--~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~ 193 (420)
..+|||+|.+.|.=...|+..+.+ ..|+|+|+|+.-++..++|+++.+ +.+ +.++..|...
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-~~n-v~~~~~d~~~--------------- 219 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-VRN-VIVVNKDARR--------------- 219 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-CCc-eEEEeccccc---------------
Confidence 468999999999776677776654 567999999999999999999985 654 6666665321
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcc
Q 014664 194 DESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEM 273 (420)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em 273 (420)
+.......++||-|++=||=-.+. ....+|..-..-+...+
T Consensus 220 --------------------------------------~~~~~~~~~~fD~iLlDaPCSg~G-~irr~Pd~~~~~~~~~i 260 (355)
T COG0144 220 --------------------------------------LAELLPGGEKFDRILLDAPCSGTG-VIRRDPDVKWRRTPEDI 260 (355)
T ss_pred --------------------------------------ccccccccCcCcEEEECCCCCCCc-ccccCccccccCCHHHH
Confidence 000111234799999999953221 12345554332222200
Q ss_pred cccCchHHHHHHHHHHHHHhhcCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 014664 274 VCSGGERAFITRIIEDSVALKQTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (420)
Q Consensus 274 ~~~GGel~Fv~riI~eS~~l~~~~~w~---tsmvgk~~~l~~l~~~L~~~g 321 (420)
..-..+=.+|++.+..+++++|-. |+-+...++-+-+...|++..
T Consensus 261 ---~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~ 308 (355)
T COG0144 261 ---AELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP 308 (355)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence 012334456888888988887754 344555667777777887763
No 207
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.11 E-value=0.023 Score=55.15 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHhhhcCCc--EEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHH
Q 014664 57 DFNATRELTRVLLLHDHGL--NWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLG 134 (420)
Q Consensus 57 d~~a~r~Lt~aLL~~ffgl--~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La 134 (420)
.++.+++|.++.+.+- +- ...++++ =.+++.-++... .+.++||||+=+|.=++..|
T Consensus 34 e~~~l~el~e~t~~~~-~~~~~m~v~~d-----------~g~fl~~li~~~---------~ak~~lelGvfTGySaL~~A 92 (237)
T KOG1663|consen 34 EPELLKELREATLTYP-QPGSEMLVGPD-----------KGQFLQMLIRLL---------NAKRTLELGVFTGYSALAVA 92 (237)
T ss_pred CcHHHHHHHHHHhhcC-CcccceecChH-----------HHHHHHHHHHHh---------CCceEEEEecccCHHHHHHH
Confidence 3778899998877764 22 2333322 234455555532 24689999975554444455
Q ss_pred Hhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 135 ASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 135 ~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
...| +-+++++|||+++++++.+-++.-+ +.++|+++.++.
T Consensus 93 lalp~dGrv~a~eid~~~~~~~~~~~k~ag-v~~KI~~i~g~a 134 (237)
T KOG1663|consen 93 LALPEDGRVVAIEIDADAYEIGLELVKLAG-VDHKITFIEGPA 134 (237)
T ss_pred HhcCCCceEEEEecChHHHHHhHHHHHhcc-ccceeeeeecch
Confidence 5566 5799999999999999999998884 899999998864
No 208
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.92 E-value=0.034 Score=54.40 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=39.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~ 178 (420)
+.++|=||=+- .+++.++...+..+++-+|||+..++.-++.++..+ +. |+.++.|.+.
T Consensus 45 gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g-l~--i~~~~~DlR~ 103 (243)
T PF01861_consen 45 GKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG-LP--IEAVHYDLRD 103 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS
T ss_pred CCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC-Cc--eEEEEecccc
Confidence 46799898654 566677766667899999999999999999999885 64 9999888764
No 209
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.87 E-value=0.0038 Score=60.78 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=33.3
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N 158 (420)
-.++||+|||+|..+..|-.. -.+.+|+|||..|++.|.+.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK 166 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc
Confidence 468999999999887766322 34789999999999999764
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.83 E-value=0.033 Score=53.63 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=58.1
Q ss_pred HhHHHHHHHHHccCCCCCCCCCCC-CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEE
Q 014664 92 SNYIHWIEDLLSSNIIPTTSRNGD-KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIE 170 (420)
Q Consensus 92 ~nyi~wi~dll~~~~~~~~~~~~~-~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~ 170 (420)
.-|.+++.|.+... +.. .. ..+++|||+|+|.=++.||..+|+.+|+.+|-..+-+..-+.=++..+ |+ +++
T Consensus 48 e~~~rHilDSl~~~--~~~---~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~-L~-nv~ 120 (215)
T COG0357 48 ELWQRHILDSLVLL--PYL---DGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG-LE-NVE 120 (215)
T ss_pred HHHHHHHHHHhhhh--hcc---cccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC-CC-CeE
Confidence 46777777776542 111 11 469999999999877788878899999999999998888888777764 54 588
Q ss_pred EEEcc
Q 014664 171 IRKVD 175 (420)
Q Consensus 171 l~~~d 175 (420)
++++.
T Consensus 121 i~~~R 125 (215)
T COG0357 121 IVHGR 125 (215)
T ss_pred Eehhh
Confidence 88764
No 211
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.83 E-value=0.022 Score=54.48 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=45.2
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~ 178 (420)
..+++|||.|+|..+..++.+.|+++++..|. |..++.|++ .+||+++.+|...
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f~ 154 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFFD 154 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TTT
T ss_pred ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHHh
Confidence 35899999999999999999999999999999 889998888 3589999998753
No 212
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.64 E-value=0.18 Score=45.62 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=67.9
Q ss_pred eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCC
Q 014664 141 SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPA 220 (420)
Q Consensus 141 ~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (420)
+|+|.||+++|++.+++.++.++ +.++++++... +.+|+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~-~~~~v~li~~s-------------------He~l~--------------------- 39 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG-LEDRVTLILDS-------------------HENLD--------------------- 39 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT--GSGEEEEES--------------------GGGGG---------------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcC-CCCcEEEEECC-------------------HHHHH---------------------
Confidence 58999999999999999999985 88899998764 11111
Q ss_pred CCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEE
Q 014664 221 GAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY 300 (420)
Q Consensus 221 ~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~ 300 (420)
..++ .+.+|++|-|==|.+..+ .+++|. -+=-..-++.+..+++.+|..
T Consensus 40 -------------~~i~-~~~v~~~iFNLGYLPggD--------------k~i~T~---~~TTl~Al~~al~lL~~gG~i 88 (140)
T PF06962_consen 40 -------------EYIP-EGPVDAAIFNLGYLPGGD--------------KSITTK---PETTLKALEAALELLKPGGII 88 (140)
T ss_dssp -------------GT---S--EEEEEEEESB-CTS---------------TTSB-----HHHHHHHHHHHHHHEEEEEEE
T ss_pred -------------hhCc-cCCcCEEEEECCcCCCCC--------------CCCCcC---cHHHHHHHHHHHHhhccCCEE
Confidence 1121 248999999998876533 333332 111234566788899999998
Q ss_pred EEEeCC--c---CcHHHHHHHHHHcCCc
Q 014664 301 TSMVGR--K---SNLKFLISKLRKVGVT 323 (420)
Q Consensus 301 tsmvgk--~---~~l~~l~~~L~~~g~~ 323 (420)
+.++-. . .-.+.|.+.+....-.
T Consensus 89 ~iv~Y~GH~gG~eE~~av~~~~~~L~~~ 116 (140)
T PF06962_consen 89 TIVVYPGHPGGKEESEAVEEFLASLDQK 116 (140)
T ss_dssp EEEE--STCHHHHHHHHHHHHHHTS-TT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCcc
Confidence 887742 2 2345666777765433
No 213
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=95.55 E-value=0.021 Score=55.38 Aligned_cols=38 Identities=13% Similarity=-0.003 Sum_probs=30.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW 154 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~ 154 (420)
...+||+|||+|.+...++.. ...+|+|+|+++.++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 458999999999887666543 44689999999988765
No 214
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=95.45 E-value=0.056 Score=54.65 Aligned_cols=42 Identities=17% Similarity=0.024 Sum_probs=28.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~ 157 (420)
...+|||||||+|.-.-.++ ......|+|+|-++..+...+.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~-~~GA~~ViGiDP~~lf~~QF~~ 156 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRML-GRGAKSVIGIDPSPLFYLQFEA 156 (315)
T ss_pred CCCEEEEecCCCcHHHHHHh-hcCCCEEEEECCChHHHHHHHH
Confidence 35699999999996543343 2233579999988776655433
No 215
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.12 E-value=0.43 Score=43.15 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=25.1
Q ss_pred EEecCcHHHHHHHHHHHHHCC-CCCCcEEEEEccC
Q 014664 143 VGSDMTDVALEWAEKNVKSNP-HISELIEIRKVDN 176 (420)
Q Consensus 143 vavDIs~~AL~~A~~N~~~N~-~l~~rI~l~~~d~ 176 (420)
+|+|+|+.+|+.|+++.+... ....+|+++.+|.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~ 35 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA 35 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech
Confidence 489999999999987765321 1234699998874
No 216
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.09 E-value=0.063 Score=57.77 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=49.8
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
....+||||||.|--...+|...|++.++|+|+....+..|.+.+...+ +. ++.++..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-l~-N~~~~~~~ 405 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-IT-NFLLFPNN 405 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-CC-eEEEEcCC
Confidence 3568999999999988889999999999999999999999888887764 64 57776554
No 217
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.89 E-value=0.02 Score=58.54 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=46.6
Q ss_pred cCCcE-EEecCCceeCCCCCcHhHHHHHHH----HHcc------CCCCCCC-------------CCCCCCeEEEECCchh
Q 014664 72 DHGLN-WWIPDGQLCPTVPNRSNYIHWIED----LLSS------NIIPTTS-------------RNGDKVKGFDIGTGAN 127 (420)
Q Consensus 72 ffgl~-~~vp~g~LiPrvP~R~nyi~wi~d----ll~~------~~~~~~~-------------~~~~~~~vLDIGTGsG 127 (420)
||=++ |.+.++ ++|.-|.+.-+=+|+.+ ++.. ..+..++ .-..+..|.|==.|+|
T Consensus 142 f~viE~y~~~pn-~~p~~p~~IyFGr~ig~g~R~li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTG 220 (421)
T KOG2671|consen 142 FFVIEEYELDPN-VGPEEPKKIYFGRLIGEGQRELIEKYDLKKRCYIGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTG 220 (421)
T ss_pred EEEEEeeccCCC-CCCCCcceeeehhhhccchHhHhhhcccccccccCCcccchhHHHHHhhhhccCCCCEEecCccccC
Confidence 34443 555555 67777777777777753 2221 1111111 0012347889555555
Q ss_pred HHHHHHHHhhcCCeeEEecCcHHHHH
Q 014664 128 CIYPLLGASLLGWSFVGSDMTDVALE 153 (420)
Q Consensus 128 ~I~~~La~~~~~~~vvavDIs~~AL~ 153 (420)
.+ ++++...++.|+|+|||-.++.
T Consensus 221 sl--Lvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 221 SL--LVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred ce--eeehhhhcceeeccccchheee
Confidence 44 4566678999999999998887
No 218
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.88 E-value=0.19 Score=51.39 Aligned_cols=156 Identities=18% Similarity=0.243 Sum_probs=93.7
Q ss_pred CCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHH
Q 014664 81 DGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNV 159 (420)
Q Consensus 81 ~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~ 159 (420)
....-|.+=- -|+=.||...|-....+ ....++|+|||-|.= ++-....+ -.++|+||.+.+++.|++-.
T Consensus 90 ~Rq~S~Ii~l-RnfNNwIKs~LI~~y~~------~~~~~~~LgCGKGGD--LlKw~kAgI~~~igiDIAevSI~qa~~RY 160 (389)
T KOG1975|consen 90 KRQRSPIIFL-RNFNNWIKSVLINLYTK------RGDDVLDLGCGKGGD--LLKWDKAGIGEYIGIDIAEVSINQARKRY 160 (389)
T ss_pred hhccCceeeh-hhhhHHHHHHHHHHHhc------cccccceeccCCccc--HhHhhhhcccceEeeehhhccHHHHHHHH
Confidence 3445555433 37778998877543211 223689999999964 33222223 37999999999999999876
Q ss_pred HHCCCCCC----cEEEEEccCCCCCCcccccccCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccc
Q 014664 160 KSNPHISE----LIEIRKVDNSESTPSIQESLTGKSVQDESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGV 235 (420)
Q Consensus 160 ~~N~~l~~----rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i 235 (420)
+...+..+ .+.|+.+|-.. . + + . +++.
T Consensus 161 rdm~~r~~~~~f~a~f~~~Dc~~---~--------------~-------l----------------~-------d~~e-- 191 (389)
T KOG1975|consen 161 RDMKNRFKKFIFTAVFIAADCFK---E--------------R-------L----------------M-------DLLE-- 191 (389)
T ss_pred HHHHhhhhcccceeEEEEeccch---h--------------H-------H----------------H-------Hhcc--
Confidence 53211111 35666666321 0 0 0 0 0111
Q ss_pred cCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHH
Q 014664 236 VRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLIS 315 (420)
Q Consensus 236 ~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~ 315 (420)
.++.+||+|-|-==|+=+.+ ..+=.+.++......++++|.| +|---+...|+.
T Consensus 192 -~~dp~fDivScQF~~HYaFe----------------------tee~ar~~l~Nva~~LkpGG~F---IgTiPdsd~Ii~ 245 (389)
T KOG1975|consen 192 -FKDPRFDIVSCQFAFHYAFE----------------------TEESARIALRNVAKCLKPGGVF---IGTIPDSDVIIK 245 (389)
T ss_pred -CCCCCcceeeeeeeEeeeec----------------------cHHHHHHHHHHHHhhcCCCcEE---EEecCcHHHHHH
Confidence 13456999988544432221 1223667888889999999974 555567788888
Q ss_pred HHHHc
Q 014664 316 KLRKV 320 (420)
Q Consensus 316 ~L~~~ 320 (420)
.|++.
T Consensus 246 rlr~~ 250 (389)
T KOG1975|consen 246 RLRAG 250 (389)
T ss_pred HHHhc
Confidence 88876
No 219
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.86 E-value=0.1 Score=52.25 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=46.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCC--CCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP--HISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~--~l~~rI~l~~~d~ 176 (420)
+.+||=||-|.|...--+....+--+++.+|||++.+++|++=...-. ....|++++..|.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 359999999999887766665556799999999999999998664321 1136888887763
No 220
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.36 E-value=0.051 Score=51.51 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCCeEEEECCchhH----HHHHHHHhh---c--CCeeEEecCcHHHHHHHHHH
Q 014664 115 DKVKGFDIGTGANC----IYPLLGASL---L--GWSFVGSDMTDVALEWAEKN 158 (420)
Q Consensus 115 ~~~~vLDIGTGsG~----I~~~La~~~---~--~~~vvavDIs~~AL~~A~~N 158 (420)
.+.+|+..||++|- |+++|.... . .++++|+|||+.+|+.|++=
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 56899999999993 444444321 2 36899999999999999873
No 221
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=94.35 E-value=0.056 Score=53.00 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=38.1
Q ss_pred CeEEEECCchhH-HHHHHHHhhcC--CeeEEecCcHHHHHHHHHHHHHCC
Q 014664 117 VKGFDIGTGANC-IYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNP 163 (420)
Q Consensus 117 ~~vLDIGTGsG~-I~~~La~~~~~--~~vvavDIs~~AL~~A~~N~~~N~ 163 (420)
.+||+||||.|- +.|+|.. .++ ..++|.|-+|.|++.-++|...+.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~-~~n~~l~v~acDfsp~Ai~~vk~~~~~~e 121 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKT-SPNNRLKVYACDFSPRAIELVKKSSGYDE 121 (264)
T ss_pred hhheeeccCCCcccchhhhc-CCCCCeEEEEcCCChHHHHHHHhccccch
Confidence 389999999995 6676654 344 899999999999999999988763
No 222
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.25 E-value=0.33 Score=48.93 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhhcC--CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 014664 113 NGDKVKGFDIGTGANCIYPLLGASLLG--WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (420)
Q Consensus 113 ~~~~~~vLDIGTGsG~I~~~La~~~~~--~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~ 178 (420)
.+.+++||||.||.|---+-.....+. .++...|.|+.+++..++-++.++ |++.++|.++|...
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-L~~i~~f~~~dAfd 199 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-LEDIARFEQGDAFD 199 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-CccceEEEecCCCC
Confidence 357899999999999643333334454 689999999999999999999995 99888999998653
No 223
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.28 Score=47.41 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=35.7
Q ss_pred CCeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSN 162 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N 162 (420)
..+.||+|+|||-+....+.-. ++-..+|+|.-++.++.+++|+...
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence 3579999999996654444222 3344589999999999999999764
No 224
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=93.98 E-value=1.4 Score=44.27 Aligned_cols=62 Identities=11% Similarity=0.144 Sum_probs=53.0
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~ 178 (420)
..+|++-|||||.+.-.++... |--+++-.|+...-.+-|.+-.+.++ +.+.+++..-|.+.
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg-i~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG-IGDNVTVTHRDVCG 168 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC-CCcceEEEEeeccc
Confidence 3589999999999887777665 44589999999999999999999995 99999999998764
No 225
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=93.83 E-value=0.073 Score=51.15 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=32.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE 156 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~ 156 (420)
..+||+.|||.|--...|+.+ +++|+|+|+++.|++.|.
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~ 76 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAF 76 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHH
T ss_pred CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHH
Confidence 458999999999887777754 789999999999999983
No 226
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=93.61 E-value=0.17 Score=54.19 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=35.4
Q ss_pred CeEEEECCchhHHHHHHHHhh----cCCeeEEecCcHHHHHHHHHHHHHCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVKSNP 163 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~----~~~~vvavDIs~~AL~~A~~N~~~N~ 163 (420)
..+.|.+||||-......... ....++|-|+.+.+...|+.|...++
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~ 269 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN 269 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC
Confidence 579999999997643322221 12469999999999999999987763
No 227
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=93.61 E-value=0.091 Score=44.70 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=37.7
Q ss_pred cEEEEEECCCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeC-----CcCcHHHHHH
Q 014664 241 QFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVG-----RKSNLKFLIS 315 (420)
Q Consensus 241 ~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvg-----k~~~l~~l~~ 315 (420)
+||+|+.||||........... .... ....+.-.++.|..++ .|.....+. .....+.+.+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~---~~~~---------~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~ 67 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKK---KKKK---------KSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRK 67 (106)
T ss_pred CcCEEEECCCChhhccccchhh---cccc---------cCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHH
Confidence 5999999999998764322100 0000 2234566777787777 554433332 3445566777
Q ss_pred HHHHc
Q 014664 316 KLRKV 320 (420)
Q Consensus 316 ~L~~~ 320 (420)
.|-+.
T Consensus 68 ~l~~~ 72 (106)
T PF07669_consen 68 FLLNN 72 (106)
T ss_pred HHhcC
Confidence 66543
No 228
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.60 E-value=0.096 Score=50.34 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=43.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N 162 (420)
+++...|||||-|.+...|+-.+|+--++|.||-...-++-++-|+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHH
Confidence 568899999999999888988999999999999999999998888754
No 229
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.29 E-value=0.28 Score=48.61 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhcCCcE-E--EecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHh
Q 014664 60 ATRELTRVLLLHDHGLN-W--WIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS 136 (420)
Q Consensus 60 a~r~Lt~aLL~~ffgl~-~--~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~ 136 (420)
..+.+.+++|..||... + .+..|..-== .++- ...||........ .+....++||||.|.|-+...++..
T Consensus 43 l~~~l~~~~L~~f~S~T~iNG~LgRG~MFvf--S~~Q----~~~LL~~~~~~~~-~~~~~~~lLDlGAGdG~VT~~l~~~ 115 (265)
T PF05219_consen 43 LWHSLASSILSWFMSKTDINGILGRGSMFVF--SEEQ----FRKLLRISGFSWN-PDWKDKSLLDLGAGDGEVTERLAPL 115 (265)
T ss_pred HHHHHHHHHHHHHHhHHhHhhhhcCCcEEEe--cHHH----HHHHhhhhccCCC-CcccCCceEEecCCCcHHHHHHHhh
Confidence 45788888899988663 2 2333322211 1222 2344543211111 1124568999999999998888654
Q ss_pred hcCCeeEEecCcHHHH
Q 014664 137 LLGWSFVGSDMTDVAL 152 (420)
Q Consensus 137 ~~~~~vvavDIs~~AL 152 (420)
+. +|+|+|+|+.|.
T Consensus 116 f~--~v~aTE~S~~Mr 129 (265)
T PF05219_consen 116 FK--EVYATEASPPMR 129 (265)
T ss_pred cc--eEEeecCCHHHH
Confidence 43 699999999984
No 230
>PRK11524 putative methyltransferase; Provisional
Probab=93.16 E-value=0.36 Score=47.92 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=44.0
Q ss_pred CCcEEEEEECCCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHH
Q 014664 239 GEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLR 318 (420)
Q Consensus 239 ~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~ 318 (420)
+++||+|++||||..........+ .+....-..+....+.++..+++.+|.+.+.++ ...+..+ ..+.
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~----------~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~-~~~~~~~-~~~~ 92 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIE----------AWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS-TENMPFI-DLYC 92 (284)
T ss_pred cCcccEEEECCCcccccccccccc----------cccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-chhhhHH-HHHH
Confidence 568999999999975221111100 111111246678899999999999998877655 4445443 3444
Q ss_pred HcCC
Q 014664 319 KVGV 322 (420)
Q Consensus 319 ~~g~ 322 (420)
+.|+
T Consensus 93 ~~~f 96 (284)
T PRK11524 93 RKLF 96 (284)
T ss_pred hcCc
Confidence 4555
No 231
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.92 E-value=0.15 Score=50.82 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=36.0
Q ss_pred CCCeEEEECCchh----HHHHHHHHhhc-----CCeeEEecCcHHHHHHHHH
Q 014664 115 DKVKGFDIGTGAN----CIYPLLGASLL-----GWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 115 ~~~~vLDIGTGsG----~I~~~La~~~~-----~~~vvavDIs~~AL~~A~~ 157 (420)
..++|.-.||+|| -|+.+|....+ .++|+|+|||..+|+.|++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4789999999999 56666665553 5799999999999999986
No 232
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.78 E-value=0.43 Score=47.75 Aligned_cols=85 Identities=20% Similarity=0.135 Sum_probs=49.3
Q ss_pred CCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCC
Q 014664 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHIS 166 (420)
Q Consensus 89 P~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~ 166 (420)
|=-.||+..+.--+...... ..+.+.+|+=||+|.=-+..++.++. ++..|+++|+|++|++.|++=++...+|+
T Consensus 97 pYy~nY~~L~~lE~~~l~~~---~~~~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~ 173 (276)
T PF03059_consen 97 PYYPNYEKLVRLEYAALRIH---AGDPPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS 173 (276)
T ss_dssp TTHHHHHHHHHHHHH-HTT-----TT---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-
T ss_pred CcHHHHHHHHHHHHHHHhhc---CCcccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc
Confidence 56678888776544321110 11234599999999765555554443 46789999999999999999887332488
Q ss_pred CcEEEEEccC
Q 014664 167 ELIEIRKVDN 176 (420)
Q Consensus 167 ~rI~l~~~d~ 176 (420)
.+++++.+|.
T Consensus 174 ~~m~f~~~d~ 183 (276)
T PF03059_consen 174 KRMSFITADV 183 (276)
T ss_dssp SSEEEEES-G
T ss_pred CCeEEEecch
Confidence 8999998874
No 233
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.72 E-value=0.28 Score=46.80 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=31.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCe-eEEecCcHHHHHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNVKS 161 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~-vvavDIs~~AL~~A~~N~~~ 161 (420)
....+|||||.|-+-...+ ...+++ .+|+|+.+...+.|+.+.+.
T Consensus 43 ~dvF~DlGSG~G~~v~~aa-l~~~~~~~~GIEi~~~~~~~a~~~~~~ 88 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAA-LQTGCKKSVGIEILPELHDLAEELLEE 88 (205)
T ss_dssp T-EEEEES-TTSHHHHHHH-HHH--SEEEEEE-SHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHH-HHcCCcEEEEEEechHHHHHHHHHHHH
Confidence 3589999999997644444 345665 99999999999999876653
No 234
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=92.66 E-value=0.85 Score=43.72 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=39.9
Q ss_pred eEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHC
Q 014664 118 KGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N 162 (420)
+||+||+|||-=+...+..+|..+..-+|+++..+..-+.-+...
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~ 72 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA 72 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc
Confidence 699999999988888999999999999999999987777776655
No 235
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.63 E-value=0.32 Score=50.64 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=48.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCC-cEEEEEccC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISE-LIEIRKVDN 176 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N~~l~~-rI~l~~~d~ 176 (420)
.+.++||-=+|||.=++-.+.+.++ .+|++-|||++|++..++|++.|+ +++ +|++.+.|.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~-~~~~~~~v~~~DA 111 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG-LEDERIEVSNMDA 111 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT--SGCCEEEEES-H
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc-ccCceEEEehhhH
Confidence 3579999999999988888888664 689999999999999999999996 887 788887763
No 236
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.56 E-value=0.2 Score=45.99 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=60.6
Q ss_pred eeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHC
Q 014664 84 LCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSN 162 (420)
Q Consensus 84 LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N 162 (420)
-+|-||-+.+-+..+..++.. +.+.+.+|||+|-|-|- |++...+ ..-+|+|++|-.+.+++--+-+.
T Consensus 50 cvPYVpAtteQv~nVLSll~~---------n~~GklvDlGSGDGRiV--laaar~g~~~a~GvELNpwLVaysrl~a~R~ 118 (199)
T KOG4058|consen 50 CVPYVPATTEQVENVLSLLRG---------NPKGKLVDLGSGDGRIV--LAAARCGLRPAVGVELNPWLVAYSRLHAWRA 118 (199)
T ss_pred cccccCccHHHHHHHHHHccC---------CCCCcEEeccCCCceee--hhhhhhCCCcCCceeccHHHHHHHHHHHHHH
Confidence 357788887777766666543 23468999999999884 4433333 56799999999999999988888
Q ss_pred CCCCCcEEEEEccC
Q 014664 163 PHISELIEIRKVDN 176 (420)
Q Consensus 163 ~~l~~rI~l~~~d~ 176 (420)
+ +..+..|+.-|.
T Consensus 119 g-~~k~trf~Rkdl 131 (199)
T KOG4058|consen 119 G-CAKSTRFRRKDL 131 (199)
T ss_pred h-cccchhhhhhhh
Confidence 5 887888776664
No 237
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=91.44 E-value=0.45 Score=47.14 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=34.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSN 162 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N 162 (420)
.+.++||+|+|.|.-...+...++ -.+++++|.|+.++++|+.-++..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 456899999999954222222233 247999999999999999876543
No 238
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=91.40 E-value=1.1 Score=45.53 Aligned_cols=57 Identities=12% Similarity=0.014 Sum_probs=48.5
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..++|.=+|.|.=...++.+.++.+++|+|+|+.|++.|++..+.. .+++++++++.
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~---~~R~~~i~~nF 78 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF---EGRVVLIHDNF 78 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc---CCcEEEEeCCH
Confidence 4799999999988777777766689999999999999999988754 46899998864
No 239
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=91.39 E-value=0.4 Score=44.20 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=31.5
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~ 157 (420)
+..|||-=+|||-. ++|+...+-+++|+|++++.+++|++
T Consensus 192 gdiVlDpF~GSGTT--~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 192 GDIVLDPFAGSGTT--AVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-EEEETT-TTTHH--HHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ceeeehhhhccChH--HHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 46899999999965 45666678899999999999999975
No 240
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=91.20 E-value=0.46 Score=46.97 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=32.1
Q ss_pred eEEEECCchhHHHHHHHHhhcCCe-eEEecCcHHHHHHHHHHH
Q 014664 118 KGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV 159 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~~~~-vvavDIs~~AL~~A~~N~ 159 (420)
+++|+.||+|... ++.+..+.+ +.++|+++.|++..+.|.
T Consensus 2 ~v~dLFsG~Gg~~--~gl~~~G~~~v~a~e~~~~a~~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFR--LGLEKAGFEIVAANEIDKSAAETYEANF 42 (275)
T ss_pred cEEEEccCcchHH--HHHHHcCCEEEEEEeCCHHHHHHHHHhC
Confidence 6899999999764 454545554 688999999999988885
No 241
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=90.72 E-value=3.9 Score=39.58 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=44.8
Q ss_pred CCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEE-EEEe-CCcCcHHHHHH
Q 014664 238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWY-TSMV-GRKSNLKFLIS 315 (420)
Q Consensus 238 ~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~-tsmv-gk~~~l~~l~~ 315 (420)
+++..|++||- +++-|+. +..+|+|+.+.++.+|++ ..+| ++-.+.+..++
T Consensus 119 ~~~svDv~Vfc---------------LSLMGTn------------~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~ 171 (219)
T PF05148_consen 119 EDESVDVAVFC---------------LSLMGTN------------WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIK 171 (219)
T ss_dssp -TT-EEEEEEE---------------S---SS-------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHH
T ss_pred CCCceeEEEEE---------------hhhhCCC------------cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHH
Confidence 35789999963 3455555 556788899988877754 4555 55667888889
Q ss_pred HHHHcCCceEEEEEecCCCeeeEEEEEeec
Q 014664 316 KLRKVGVTIVKTTEFVQGQTCRWGLAWSFV 345 (420)
Q Consensus 316 ~L~~~g~~~v~~~e~~qG~t~Rw~lAWsF~ 345 (420)
.+++.|+.... +|.+.+ .++..-|.
T Consensus 172 ~~~~~GF~~~~--~d~~n~---~F~~f~F~ 196 (219)
T PF05148_consen 172 ALKKLGFKLKS--KDESNK---HFVLFEFK 196 (219)
T ss_dssp HHHCTTEEEEE--EE--ST---TEEEEEEE
T ss_pred HHHHCCCeEEe--cccCCC---eEEEEEEE
Confidence 99999997443 454443 23444553
No 242
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=90.66 E-value=0.69 Score=46.11 Aligned_cols=144 Identities=15% Similarity=0.145 Sum_probs=92.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCcccc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQD 194 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~ 194 (420)
...|||+|+|.|.=...++..+. ...++|.|+++.-+...+.|+++.+ +. .|.+...|...
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-~~-~v~~~~~D~~~---------------- 147 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-VF-NVIVINADARK---------------- 147 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--S-SEEEEESHHHH----------------
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-Cc-eEEEEeecccc----------------
Confidence 45799999999987767776665 5799999999999999999999985 53 46666554211
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCccc-ccCCCCcccCCCCCcc
Q 014664 195 ESNMDMSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEE-AGLNPKTSCGGTPEEM 273 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~ee-a~~eP~~a~~G~~~Em 273 (420)
+.... ....||.|+.-+|= |... ...+|..-..-... .
T Consensus 148 ------------------------------------~~~~~--~~~~fd~VlvDaPC--Sg~G~i~r~p~~~~~~~~~-~ 186 (283)
T PF01189_consen 148 ------------------------------------LDPKK--PESKFDRVLVDAPC--SGLGTIRRNPDIKWRRSPE-D 186 (283)
T ss_dssp ------------------------------------HHHHH--HTTTEEEEEEECSC--CCGGGTTTCTTHHHHE-TT-H
T ss_pred ------------------------------------ccccc--cccccchhhcCCCc--cchhhhhhccchhhccccc-c
Confidence 00000 12369999999994 3332 12345432211111 0
Q ss_pred cccCchHH-HHHHHHHHHHHhh----cCCeEE---EEEeCCcCcHHHHHHHHHHcC
Q 014664 274 VCSGGERA-FITRIIEDSVALK----QTFRWY---TSMVGRKSNLKFLISKLRKVG 321 (420)
Q Consensus 274 ~~~GGel~-Fv~riI~eS~~l~----~~~~w~---tsmvgk~~~l~~l~~~L~~~g 321 (420)
+ -.+. .=.+|++.+..+. +.+|.. |+-+.+.++-.-+...|++..
T Consensus 187 ~---~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~ 239 (283)
T PF01189_consen 187 I---EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP 239 (283)
T ss_dssp H---HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST
T ss_pred c---chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC
Confidence 0 0222 2345888888888 777643 445566777777777888763
No 243
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=90.56 E-value=1.1 Score=35.68 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=35.2
Q ss_pred EEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 119 GFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 119 vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
++|+|||.|... .+...... ..++|+|+++.++..++..... ..... +.+...+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~-~~~~~~~ 106 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGL-VDFVVAD 106 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCc-eEEEEec
Confidence 999999999754 22222222 5899999999999996655533 21211 5666555
No 244
>PHA01634 hypothetical protein
Probab=89.30 E-value=0.82 Score=41.11 Aligned_cols=46 Identities=13% Similarity=-0.060 Sum_probs=35.6
Q ss_pred CCCeEEEECCchh--HHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCC
Q 014664 115 DKVKGFDIGTGAN--CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNP 163 (420)
Q Consensus 115 ~~~~vLDIGTGsG--~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~ 163 (420)
.+.+|+|||.+.| +||-+|. ..-.|+|+|.++...+..++|++.|+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~---GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR---GASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc---CccEEEEeccCHHHHHHHHHHhhhhe
Confidence 3568999997555 6665542 23479999999999999999999874
No 245
>PRK13699 putative methylase; Provisional
Probab=89.24 E-value=2.7 Score=40.53 Aligned_cols=75 Identities=11% Similarity=0.315 Sum_probs=50.5
Q ss_pred CCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHH
Q 014664 238 DGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKL 317 (420)
Q Consensus 238 ~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L 317 (420)
+++++|+|++=|||.-...... -+ ...+ . .-.+|....+.|+.+.+++++++.+..+ ..+...+...+
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~--~~-~~~~-~-------~~~ew~~~~l~E~~RVLKpgg~l~if~~-~~~~~~~~~al 84 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQ--GR-TIAG-D-------KTDEWLQPACNEMYRVLKKDALMVSFYG-WNRVDRFMAAW 84 (227)
T ss_pred CccccceEEeCCCcccccccCC--Cc-cccc-c-------cHHHHHHHHHHHHHHHcCCCCEEEEEec-cccHHHHHHHH
Confidence 4688999999999974321100 00 0111 1 1246788899999998888888766555 55677788888
Q ss_pred HHcCCce
Q 014664 318 RKVGVTI 324 (420)
Q Consensus 318 ~~~g~~~ 324 (420)
++.|+..
T Consensus 85 ~~~GF~l 91 (227)
T PRK13699 85 KNAGFSV 91 (227)
T ss_pred HHCCCEE
Confidence 9999853
No 246
>PRK11524 putative methyltransferase; Provisional
Probab=88.95 E-value=1.2 Score=44.28 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=37.5
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHH
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~ 161 (420)
....|||--+|||-- ++++...+-+++|+||+++.+++|++-++.
T Consensus 208 ~GD~VLDPF~GSGTT--~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 208 PGDIVLDPFAGSFTT--GAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCEEEECCCCCcHH--HHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 346899999999965 455666788999999999999999998764
No 247
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.89 E-value=0.85 Score=47.33 Aligned_cols=58 Identities=19% Similarity=0.048 Sum_probs=48.2
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
..+++|-=+|+|.=++-.+.+.+..++++-||||+|++.+++|++.|. . ..+.+++.|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~-~~~~v~n~D 110 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-G-EDAEVINKD 110 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-c-ccceeecch
Confidence 468999999999888888888777799999999999999999999993 2 345555544
No 248
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=88.39 E-value=1.2 Score=45.52 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=34.6
Q ss_pred CCeEEEECCchhHHHHHHHHhh----cCCeeEEecCcHHHHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASL----LGWSFVGSDMTDVALEWAEKNVK 160 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~----~~~~vvavDIs~~AL~~A~~N~~ 160 (420)
...++|+|||+|-=..+|...+ ..+..+++|||.++|+.|..++.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence 3479999999996333333332 24789999999999999999998
No 249
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=85.54 E-value=2.2 Score=44.07 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=44.6
Q ss_pred CCCcHhHHHHHHHHHccCCCCCC--CCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCC
Q 014664 88 VPNRSNYIHWIEDLLSSNIIPTT--SRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHI 165 (420)
Q Consensus 88 vP~R~nyi~wi~dll~~~~~~~~--~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l 165 (420)
.|+|..|= +++.+..-.+... .......++||||++.|.-.-.|..+ +.+|+|+|..+-+ .++..+
T Consensus 184 apSRs~lK--LeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~-----~~L~~~--- 251 (357)
T PRK11760 184 APSRSTLK--LEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA-----QSLMDT--- 251 (357)
T ss_pred CCChHHHH--HHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC-----HhhhCC---
Confidence 37898773 3444332211100 00123468999999999876555433 6799999976532 223333
Q ss_pred CCcEEEEEccC
Q 014664 166 SELIEIRKVDN 176 (420)
Q Consensus 166 ~~rI~l~~~d~ 176 (420)
.+|+.+..+.
T Consensus 252 -~~V~h~~~d~ 261 (357)
T PRK11760 252 -GQVEHLRADG 261 (357)
T ss_pred -CCEEEEeccC
Confidence 4688887764
No 250
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=85.18 E-value=2.8 Score=39.46 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=52.4
Q ss_pred CceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHh-hcCCeeEEecCcHHHHHHHHHHHH
Q 014664 82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS-LLGWSFVGSDMTDVALEWAEKNVK 160 (420)
Q Consensus 82 g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~-~~~~~vvavDIs~~AL~~A~~N~~ 160 (420)
|.+.|+-+ |++..+.+..-+ ....-||++|.|+|.|.-.+.++ .++-.++++|.|++-+..-.+-
T Consensus 27 GaI~PsSs-------~lA~~M~s~I~p-----esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-- 92 (194)
T COG3963 27 GAILPSSS-------ILARKMASVIDP-----ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-- 92 (194)
T ss_pred eeecCCcH-------HHHHHHHhccCc-----ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--
Confidence 67788753 677777665322 23468999999999998766654 3567899999999987664332
Q ss_pred HCCCCCCcEEEEEccC
Q 014664 161 SNPHISELIEIRKVDN 176 (420)
Q Consensus 161 ~N~~l~~rI~l~~~d~ 176 (420)
. +.+.++++|.
T Consensus 93 -~----p~~~ii~gda 103 (194)
T COG3963 93 -Y----PGVNIINGDA 103 (194)
T ss_pred -C----CCccccccch
Confidence 2 2345666663
No 251
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=84.13 E-value=0.9 Score=39.49 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=22.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCc
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs 148 (420)
....+|||||.|.+--+|.. -+....|+|+-
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD~R 89 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNS--EGYPGWGIDAR 89 (112)
T ss_pred CCceEEccCCchHHHHHHHh--CCCCccccccc
Confidence 45799999999976555543 36677788874
No 252
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=84.04 E-value=0.63 Score=38.59 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=15.1
Q ss_pred EEECCchhHHHHHHHHhhcC---CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 120 FDIGTGANCIYPLLGASLLG---WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 120 LDIGTGsG~I~~~La~~~~~---~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
|+|||..|.-...++..... .+++++|..+. .+.++++++.. .+.++++++.++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-~~~~~~~~~~g~s 58 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-GLSDRVEFIQGDS 58 (106)
T ss_dssp --------------------------EEEESS-------------G-GG-BTEEEEES-T
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-CCCCeEEEEEcCc
Confidence 68998888665556554432 37999999996 44555666554 3677899999874
No 253
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=83.92 E-value=0.75 Score=41.98 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=27.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHH
Q 014664 115 DKVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDV 150 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~ 150 (420)
...++|||||+.|.-.-.+..+. +.++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45799999999998766665554 4689999999876
No 254
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=83.47 E-value=13 Score=37.36 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhc-CCeEEEEEe-CCcCcHHHHHHHHHHcCCceE
Q 014664 283 ITRIIEDSVALKQ-TFRWYTSMV-GRKSNLKFLISKLRKVGVTIV 325 (420)
Q Consensus 283 v~riI~eS~~l~~-~~~w~tsmv-gk~~~l~~l~~~L~~~g~~~v 325 (420)
+...|+|+.++++ .|.||..+| ++.+........|...||...
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK 287 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence 4556677777655 456888888 445667778888999999643
No 255
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.34 E-value=32 Score=33.09 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCCCe---eeEEEEEeecC
Q 014664 286 IIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQT---CRWGLAWSFVP 346 (420)
Q Consensus 286 iI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t---~Rw~lAWsF~~ 346 (420)
.++-+..++.++|-|..-+=.......++..+++. +..|++.+-...++ .=++++|.|..
T Consensus 141 a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~-F~~v~~~KP~aSR~~S~E~y~v~~~~~~ 203 (205)
T COG0293 141 ALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL-FRKVKIFKPKASRKRSREIYLVAKGFKG 203 (205)
T ss_pred HHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh-hceeEEecCccccCCCceEEEEEecccc
Confidence 34445667777777665554567778888888764 66777776555543 44677777653
No 256
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=82.46 E-value=1.6 Score=44.39 Aligned_cols=58 Identities=17% Similarity=0.037 Sum_probs=44.7
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
...++|.=-|.|.-...+..++++.+++|+|.|++|++.|+++++.. .+++.+++.+.
T Consensus 21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~---~~r~~~~~~~F 78 (310)
T PF01795_consen 21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF---DDRFIFIHGNF 78 (310)
T ss_dssp T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC---CTTEEEEES-G
T ss_pred CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc---cceEEEEeccH
Confidence 35899988899988888888888899999999999999998887643 57899998864
No 257
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=81.76 E-value=2.4 Score=41.40 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=32.4
Q ss_pred eEEEECCchhHHHHHHHHhhcCC-eeEEecCcHHHHHHHHHHHH
Q 014664 118 KGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK 160 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~~~-~vvavDIs~~AL~~A~~N~~ 160 (420)
+++|+.||+|.+ .++.+..++ .+.|+|+++.|.+.-+.|..
T Consensus 2 ~~~dlFsG~Gg~--~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGF--SLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHH--HHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHH--HHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 689999999976 566666665 47899999999998888864
No 258
>PRK13699 putative methylase; Provisional
Probab=81.67 E-value=4.9 Score=38.80 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=37.2
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N 162 (420)
...|||-=+|||-. .+++...+-+++|+|++++..+.|.+.++.-
T Consensus 164 g~~vlDpf~Gsgtt--~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 164 NAIVLDPFAGSGST--CVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCEEEeCCCCCCHH--HHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 45899999999965 4555666889999999999999998888653
No 259
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=80.91 E-value=1.2 Score=42.68 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=29.3
Q ss_pred CCCeEEEECCchhH---HHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 115 DKVKGFDIGTGANC---IYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 115 ~~~~vLDIGTGsG~---I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++..|+++|+=.|. .+..+...+ ...+|+|+||+...... .-++.++ +..+|+++++|..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp-~~~rI~~i~Gds~ 95 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP-MSPRITFIQGDSI 95 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc-ccCceEEEECCCC
Confidence 45789999995543 233333334 56799999997654332 2233465 7789999999743
No 260
>PRK10458 DNA cytosine methylase; Provisional
Probab=79.25 E-value=7.5 Score=41.73 Aligned_cols=72 Identities=17% Similarity=0.120 Sum_probs=47.3
Q ss_pred CceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCe-eEEecCcHHHHHHHHHHH
Q 014664 82 GQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWS-FVGSDMTDVALEWAEKNV 159 (420)
Q Consensus 82 g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~-vvavDIs~~AL~~A~~N~ 159 (420)
|-.+|+.+ +..-+..+.+++... |.. ......+++|+-||.|.+ .++.+.-+.+ +.++|+++.|.+.=+.|.
T Consensus 58 ~~~~~~~~-~~~~~~~~~~~~~~~--~~~-~~~~~~~~iDLFsGiGGl--~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 58 GKSAWHRL-SEAEFAHLQTLLPKP--PAH-HPHYAFRFIDLFAGIGGI--RRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CCCCCCCc-cHHHHHHHHHhcccC--ccc-CcCCCceEEEeCcCccHH--HHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 33444423 344556777777542 111 123467999999999976 4555555654 678999999988888774
No 261
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=79.16 E-value=1.3 Score=46.88 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=47.6
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCc-EEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISEL-IEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~r-I~l~~~d~ 176 (420)
..+-|+.||.|-.++-++. .+.+|+|-|.+++++++-+.|+..|. +... |+++.-|.
T Consensus 251 evv~D~FaGvGPfa~Pa~k--K~crV~aNDLNpesik~Lk~ni~lNk-v~~~~iei~Nmda 308 (495)
T KOG2078|consen 251 EVVCDVFAGVGPFALPAAK--KGCRVYANDLNPESIKWLKANIKLNK-VDPSAIEIFNMDA 308 (495)
T ss_pred chhhhhhcCcCccccchhh--cCcEEEecCCCHHHHHHHHHhccccc-cchhheeeecccH
Confidence 4689999999987655544 45999999999999999999999995 7665 99887773
No 262
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=78.52 E-value=5.1 Score=34.98 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=32.1
Q ss_pred EECCchhHHHHHHH----HhhcCCeeEEecCcHHHHHHHHHH--HHHCCCCCCcEEEEEc
Q 014664 121 DIGTGANCIYPLLG----ASLLGWSFVGSDMTDVALEWAEKN--VKSNPHISELIEIRKV 174 (420)
Q Consensus 121 DIGTGsG~I~~~La----~~~~~~~vvavDIs~~AL~~A~~N--~~~N~~l~~rI~l~~~ 174 (420)
|||++.|.....+. ...++.+++++|.+|..++..++| +..|+ ....+++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~-~~~~~~~~~~ 59 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND-KDGEVEFHPY 59 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT-TSTTGGEEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC-CCceEEEEEe
Confidence 89999994333332 234578999999999999999999 77774 3344666654
No 263
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=77.94 E-value=3.3 Score=40.92 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=27.9
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHH
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVAL 152 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL 152 (420)
...++|++|+|+|..+ ++++....++++-+|+-....
T Consensus 86 ~~~~vlELGsGtglvG-~~aa~~~~~~v~ltD~~~~~~ 122 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVG-ILAALLLGAEVVLTDLPKVVE 122 (248)
T ss_pred cceeEEEecCCccHHH-HHHHHHhcceeccCCchhhHH
Confidence 3568999999999655 455556789999999865433
No 264
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.50 E-value=1 Score=42.08 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=38.7
Q ss_pred CCeEEEECCchhHHH-HHHHHhhcCCeeEEecCcHHHHHHHHHHHHHC
Q 014664 116 KVKGFDIGTGANCIY-PLLGASLLGWSFVGSDMTDVALEWAEKNVKSN 162 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~-~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N 162 (420)
..+||++|-|--|++ +++|.+-+...|..+|=++++++.-++.+..|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 368999999976655 44566678889999999999999999888777
No 265
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=75.73 E-value=15 Score=37.40 Aligned_cols=57 Identities=16% Similarity=0.036 Sum_probs=48.5
Q ss_pred CeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
...+|.=-|.|.-+-.+..+++. .+++|+|.|+.|++.|++....+ .+++.+++...
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~---~~r~~~v~~~F 82 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF---DGRVTLVHGNF 82 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc---CCcEEEEeCcH
Confidence 58999988999888888888875 46999999999999999998875 37899998863
No 266
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.57 E-value=1.8 Score=46.46 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=73.5
Q ss_pred HHHHHHHhhhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCC----------------CCCCCCCCCCeEEEECCc
Q 014664 62 RELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNII----------------PTTSRNGDKVKGFDIGTG 125 (420)
Q Consensus 62 r~Lt~aLL~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~----------------~~~~~~~~~~~vLDIGTG 125 (420)
|.|+.+.+++++.+.|..-... .....+.+-...... .......++.+|||.=++
T Consensus 49 RdlSi~vir~~~~~~~~~~~~~---------~~~~~~~~~~se~~~e~~~~~~~~~~~~~t~~~~~~~~~~l~vLealsA 119 (525)
T KOG1253|consen 49 RDLSITVVRAFSNLRFKEGVAK---------TFSKKILKRGSETGKESLKETDSYNDSPKTAALLKREEKSLRVLEALSA 119 (525)
T ss_pred hhhHHHHHHHHHHHHHHhhhhh---------hhhHHHHHhhhcccccccccccccCCCccccchhhhccCcchHHHHhhh
Confidence 7888999999999987665433 111222222211100 000112356789999999
Q ss_pred hhHHHHHHHHhhcCC-eeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 126 ANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 126 sG~I~~~La~~~~~~-~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
||.=++-.+.+.++. +++|-|.++.+++.-++|++.|+ .++.++..+.|
T Consensus 120 tGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~-v~~ive~~~~D 169 (525)
T KOG1253|consen 120 TGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG-VEDIVEPHHSD 169 (525)
T ss_pred hhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC-chhhcccccch
Confidence 998888888888885 79999999999999999999995 77777777666
No 267
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=74.01 E-value=6.7 Score=39.17 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=37.7
Q ss_pred CeEEEECCchh---HHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCC
Q 014664 117 VKGFDIGTGAN---CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSE 178 (420)
Q Consensus 117 ~~vLDIGTGsG---~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~ 178 (420)
...||||||-- -+--..-...|+.+|+-+|+||.++..|+.-+..++ ..+..++.+|...
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADLRD 132 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--TT-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCCCC
Confidence 47999999943 222212223589999999999999999999988774 2468999999764
No 268
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=72.92 E-value=11 Score=38.43 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=29.2
Q ss_pred eEEEECCchhHHHHHHHHhhc-CCeeEEecCcHHHHHHHHH
Q 014664 118 KGFDIGTGANCIYPLLGASLL-GWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~-~~~vvavDIs~~AL~~A~~ 157 (420)
+++=+|+|.=.+..+++++.. ..+++++|++++-|+.|++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 799999987333222333434 4789999999999999987
No 269
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=68.47 E-value=5.6 Score=38.61 Aligned_cols=72 Identities=13% Similarity=0.203 Sum_probs=45.3
Q ss_pred HHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhc--------CCeeEEecCcHHHHHHHHHHHHHC----C
Q 014664 96 HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLL--------GWSFVGSDMTDVALEWAEKNVKSN----P 163 (420)
Q Consensus 96 ~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~--------~~~vvavDIs~~AL~~A~~N~~~N----~ 163 (420)
.|+.+.......| ..+.+|+++|.|+|-++.-+...+. ..+++-+|+|+...+.-++.+... .
T Consensus 4 ~~~~~~~~~~~~p-----~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~ 78 (252)
T PF02636_consen 4 RWIAQMWEQLGRP-----SEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDT 78 (252)
T ss_dssp HHHHHHHHHCT-------SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---ST
T ss_pred HHHHHHHHHcCCC-----CcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccccc
Confidence 3566665543111 2357999999999988766655432 358999999999988888877542 1
Q ss_pred CCCCcEEEE
Q 014664 164 HISELIEIR 172 (420)
Q Consensus 164 ~l~~rI~l~ 172 (420)
....+|..+
T Consensus 79 ~~~~~i~w~ 87 (252)
T PF02636_consen 79 EFGDPIRWL 87 (252)
T ss_dssp TTCGCEEEE
T ss_pred ccCCccchh
Confidence 134456663
No 270
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=67.72 E-value=24 Score=39.16 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=35.2
Q ss_pred CcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEecCCCeeeEEEEE
Q 014664 271 EEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEFVQGQTCRWGLAW 342 (420)
Q Consensus 271 ~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~~qG~t~Rw~lAW 342 (420)
-|||.+ +|+..|.+ +.++++-+++ .+....|+.-|.+.||...+... .|+++-|.+|+
T Consensus 181 p~~W~~----~~~~~l~~----~~~~~~~~~t----~t~a~~vr~~l~~~GF~v~~~~~--~g~kr~~~~~~ 238 (662)
T PRK01747 181 PDMWSP----NLFNALAR----LARPGATLAT----FTSAGFVRRGLQEAGFTVRKVKG--FGRKREMLVGE 238 (662)
T ss_pred hhhccH----HHHHHHHH----HhCCCCEEEE----eehHHHHHHHHHHcCCeeeecCC--Cchhhhhhheh
Confidence 456653 45555543 4445554433 35678999999999997444433 24555566665
No 271
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=67.61 E-value=3.7 Score=40.66 Aligned_cols=43 Identities=35% Similarity=0.301 Sum_probs=30.0
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~ 159 (420)
..++||||||+. ||.+|.+...--+++.+|..+..++.-++=+
T Consensus 57 g~~llDiGsGPt-iy~~lsa~~~f~~I~l~dy~~~N~~el~kWl 99 (256)
T PF01234_consen 57 GETLLDIGSGPT-IYQLLSACEWFEEIVLSDYSEQNREELEKWL 99 (256)
T ss_dssp EEEEEEES-TT---GGGTTGGGTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCcH-HHhhhhHHHhhcceEEeeccHhhHHHHHHHH
Confidence 358999999995 6666655433347999999999988665544
No 272
>PRK00536 speE spermidine synthase; Provisional
Probab=67.10 E-value=10 Score=37.69 Aligned_cols=76 Identities=12% Similarity=-0.104 Sum_probs=51.6
Q ss_pred hcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHH
Q 014664 71 HDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDV 150 (420)
Q Consensus 71 ~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~ 150 (420)
..||.-+-+. ++.+ + ++-+++. .+.|.. +|-+ ....+.+||=||.|-|...--+... + .+|+.+|||++
T Consensus 37 ~~fGr~LvLD-~~~~-t--e~dEfiY--HEmLvH--ppl~-~h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~ 105 (262)
T PRK00536 37 KDFGEIAMLN-KQLL-F--KNFLHIE--SELLAH--MGGC-TKKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEK 105 (262)
T ss_pred cccccEEEEe-eeee-e--cchhhhH--HHHHHH--HHHh-hCCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHH
Confidence 4677777777 6664 3 4544554 344432 1111 1234679999999999876655533 4 39999999999
Q ss_pred HHHHHHH
Q 014664 151 ALEWAEK 157 (420)
Q Consensus 151 AL~~A~~ 157 (420)
.++.|++
T Consensus 106 Vv~~~k~ 112 (262)
T PRK00536 106 ILDSFIS 112 (262)
T ss_pred HHHHHHH
Confidence 9999998
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=66.88 E-value=5.1 Score=43.22 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=34.6
Q ss_pred EEEecCC-ceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHH
Q 014664 76 NWWIPDG-QLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGA 135 (420)
Q Consensus 76 ~~~vp~g-~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~ 135 (420)
.|..|-| ...|. +-..||+.|++++... ..++.-..+||+|||+|-.+..|..
T Consensus 84 ~~~FPgggt~F~~--Ga~~Yid~i~~~~~~~-----~~~g~iR~~LDvGcG~aSF~a~l~~ 137 (506)
T PF03141_consen 84 KFRFPGGGTMFPH--GADHYIDQIAEMIPLI-----KWGGGIRTALDVGCGVASFGAYLLE 137 (506)
T ss_pred EEEeCCCCccccC--CHHHHHHHHHHHhhcc-----ccCCceEEEEeccceeehhHHHHhh
Confidence 4555543 33343 4468999999988642 1123445799999999987766654
No 274
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=66.83 E-value=11 Score=38.91 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=50.7
Q ss_pred CCcEEEecCCceeCCCCCcHhHHHHHHHHHccCC-----CCC-CCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEec
Q 014664 73 HGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNI-----IPT-TSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSD 146 (420)
Q Consensus 73 fgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~-----~~~-~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavD 146 (420)
|.-.+-||+..+++- |...++. ..+=++-... +.. ...+++.+-|.-+| |.|-+++.+|..+- ++|+|+|
T Consensus 122 yaeyv~v~~~~~~~i-P~~~d~~-~aApllCaGiT~y~alk~~~~~pG~~V~I~G~G-GlGh~avQ~Aka~g-a~Via~~ 197 (339)
T COG1064 122 YAEYVVVPARYVVKI-PEGLDLA-EAAPLLCAGITTYRALKKANVKPGKWVAVVGAG-GLGHMAVQYAKAMG-AEVIAIT 197 (339)
T ss_pred ceeEEEEchHHeEEC-CCCCChh-hhhhhhcCeeeEeeehhhcCCCCCCEEEEECCc-HHHHHHHHHHHHcC-CeEEEEe
Confidence 444577888888876 5566654 3444433211 000 00123344555556 66677777776654 9999999
Q ss_pred CcHHHHHHHHHH
Q 014664 147 MTDVALEWAEKN 158 (420)
Q Consensus 147 Is~~AL~~A~~N 158 (420)
++++-++.|++=
T Consensus 198 ~~~~K~e~a~~l 209 (339)
T COG1064 198 RSEEKLELAKKL 209 (339)
T ss_pred CChHHHHHHHHh
Confidence 999999998764
No 275
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=66.73 E-value=13 Score=36.06 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=33.0
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHH
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~ 161 (420)
...++||.|+|-|=|.--|..... -+|..+|..+.-++.|++.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcc
Confidence 346899999999988765543332 4799999999999999987654
No 276
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=66.49 E-value=16 Score=38.35 Aligned_cols=60 Identities=13% Similarity=0.064 Sum_probs=42.2
Q ss_pred CCeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHHHHH---HCC-CC-CCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEKNVK---SNP-HI-SELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~N~~---~N~-~l-~~rI~l~~~d~ 176 (420)
..++|=+|-|-|.-.--| .++|+ -+++-+|.||++++.|++|.. .|. .+ +.|++++..|.
T Consensus 290 a~~vLvlGGGDGLAlRel-lkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA 355 (508)
T COG4262 290 ARSVLVLGGGDGLALREL-LKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA 355 (508)
T ss_pred cceEEEEcCCchHHHHHH-HhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH
Confidence 468999999999543333 35674 589999999999999997653 221 12 24677776663
No 277
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.56 E-value=11 Score=38.18 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=31.4
Q ss_pred EEEECCchhHHHHHHHHhhcCCee-EEecCcHHHHHHHHHHH
Q 014664 119 GFDIGTGANCIYPLLGASLLGWSF-VGSDMTDVALEWAEKNV 159 (420)
Q Consensus 119 vLDIGTGsG~I~~~La~~~~~~~v-vavDIs~~AL~~A~~N~ 159 (420)
++|+-||+|.. .++.+..+.++ .++|+++.|++.-+.|.
T Consensus 1 vidLF~G~GG~--~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGI--RLGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHH--HHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 58999999976 46666667765 57999999999888874
No 278
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=60.42 E-value=4.3 Score=43.55 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=40.1
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHH
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~ 161 (420)
....+|=+|-|+|....-|-..++...++|++|+|++++.|..+...
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f 341 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGF 341 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhch
Confidence 45678888888898877777778889999999999999999998854
No 279
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=59.95 E-value=16 Score=37.11 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=33.8
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCC-eeEEecCcHHHHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGW-SFVGSDMTDVALEWAEKNVK 160 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~-~vvavDIs~~AL~~A~~N~~ 160 (420)
..+++|+.||+|.+ .++.+.-+. -+.++||++.|++.=+.|-.
T Consensus 3 ~~~~idLFsG~GG~--~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGL--SLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchH--HHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 46899999999976 466555554 47899999999988877754
No 280
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=59.60 E-value=16 Score=38.58 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=33.1
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N 158 (420)
-..++|+|.|-|-+.-.|.. .++..|+|+|=|..+.+-|++-
T Consensus 154 i~~vvD~GaG~G~LSr~lSl-~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSL-GYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhh-ccCceEEEeccchHHHHHHHHH
Confidence 35799999999988766654 3688999999998777766543
No 281
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=56.44 E-value=23 Score=32.85 Aligned_cols=57 Identities=18% Similarity=0.094 Sum_probs=39.0
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|. +|.|+..++..+ .+++|++++.++..+..+...+...+ ..+.++..|..
T Consensus 7 ~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~ 65 (251)
T PRK12826 7 RVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG---GKARARQVDVR 65 (251)
T ss_pred CEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCC
Confidence 46777775 456777776654 37899999999887776666665432 35788877753
No 282
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=56.26 E-value=4.6 Score=39.27 Aligned_cols=41 Identities=12% Similarity=0.183 Sum_probs=31.0
Q ss_pred CCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHH
Q 014664 114 GDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAE 156 (420)
Q Consensus 114 ~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~ 156 (420)
..+.++||||.|-|-|...++-.+ -+|+|+|.|..|...-+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~ 151 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLK 151 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHh
Confidence 356899999999999876654332 25899999999876543
No 283
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=53.48 E-value=14 Score=36.57 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=33.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N 158 (420)
...++|||||-|.|...|..+- --+++.+|.|-.+++.++.-
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc
Confidence 3579999999999988876543 23789999999999988643
No 284
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=53.02 E-value=4.7 Score=26.75 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=6.9
Q ss_pred CCCCCCCC
Q 014664 16 IHPKNKYS 23 (420)
Q Consensus 16 mHprN~y~ 23 (420)
-||||+|-
T Consensus 4 ~hprNrYV 11 (28)
T PF12368_consen 4 VHPRNRYV 11 (28)
T ss_pred cCcchhhH
Confidence 59999995
No 285
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=52.13 E-value=26 Score=32.10 Aligned_cols=75 Identities=8% Similarity=0.066 Sum_probs=39.8
Q ss_pred EEEEEECCCcccCcccccCCCCcccCCCCCcccccCchHHHHHHHHHHHHHhhcCCeEEEEEeCCcCcHH-HHHHHHHHc
Q 014664 242 FDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGERAFITRIIEDSVALKQTFRWYTSMVGRKSNLK-FLISKLRKV 320 (420)
Q Consensus 242 FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGel~Fv~riI~eS~~l~~~~~w~tsmvgk~~~l~-~l~~~L~~~ 320 (420)
+|+|++=|||........ .....+.+ ....=+.++..++.++.++++.+|.+...++...... .+..++...
T Consensus 1 VdliitDPPY~~~~~~~~------~~~~~~~~-~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~ 73 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNN------YFDYGDNK-NHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIF 73 (231)
T ss_dssp EEEEEE---TSSSCS-----------CSCHCC-HHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcch------hhhccCCC-CHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHh
Confidence 589999999987654100 00000000 0001266888899999999999999988888443322 333334444
Q ss_pred C-Cc
Q 014664 321 G-VT 323 (420)
Q Consensus 321 g-~~ 323 (420)
| +.
T Consensus 74 g~~~ 77 (231)
T PF01555_consen 74 GGFF 77 (231)
T ss_dssp TT-E
T ss_pred hhhh
Confidence 6 53
No 286
>PRK05854 short chain dehydrogenase; Provisional
Probab=50.91 E-value=45 Score=33.10 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=40.9
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|+++| |+..++..+ .+++|+.+..+++.++-+...+.... -..++.++..|..
T Consensus 15 k~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~ 75 (313)
T PRK05854 15 KRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV-PDAKLSLRALDLS 75 (313)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEEecCC
Confidence 46777777665 777777655 47899999999887776666664431 1235888888754
No 287
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=50.49 E-value=52 Score=32.29 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=34.9
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH---HHHHCCCC----CCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK---NVKSNPHI----SELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~---N~~~N~~l----~~rI~l~~~d~~ 177 (420)
..+|||.=+|-|-=+.+++. .+.+|+++|.||....+-+. +....+.. ..+|+++++|..
T Consensus 76 ~~~VLDaTaGLG~Da~vlA~--~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 76 RPSVLDATAGLGRDAFVLAS--LGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp ---EEETT-TTSHHHHHHHH--HT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred CCEEEECCCcchHHHHHHHc--cCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 35899998898877666664 37899999999977665543 33333222 248999988753
No 288
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=48.95 E-value=34 Score=34.82 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=38.1
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..|+=+|-- -.-++.++.....-++.-+|||+..++.-.+-++..+ +. .|+.+.-|..
T Consensus 154 K~I~vvGDD-DLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g-~~-~ie~~~~Dlr 211 (354)
T COG1568 154 KEIFVVGDD-DLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG-YN-NIEAFVFDLR 211 (354)
T ss_pred CeEEEEcCc-hhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC-cc-chhheeehhc
Confidence 457777732 2233333323233589999999999999999998874 53 4666666654
No 289
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=47.71 E-value=65 Score=33.72 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=44.4
Q ss_pred HHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhh--------cCCeeEEecCcHHHHHHHHHHHHHC
Q 014664 96 HWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASL--------LGWSFVGSDMTDVALEWAEKNVKSN 162 (420)
Q Consensus 96 ~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~--------~~~~vvavDIs~~AL~~A~~N~~~N 162 (420)
+|+..++.....| .+..+++||.|.|.+..-+.... ...++.-+|+|++-.+.=+++++..
T Consensus 64 ~~~~~~wq~~g~p------~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 64 EQFLQLWQELGRP------APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHhcCC------CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 5666666643222 35689999999998877665533 2578999999999888877777754
No 290
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=47.65 E-value=12 Score=37.55 Aligned_cols=37 Identities=16% Similarity=0.016 Sum_probs=26.5
Q ss_pred CCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALE 153 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~ 153 (420)
..+|||+|||++.-.+.. .......+...|.+.+.++
T Consensus 117 ~k~vLELgCg~~Lp~i~~-~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFA-FVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred CceeEecCCcccccchhh-hhhccceeeeEecchhhee
Confidence 468999999998544333 2223378999999888874
No 291
>PTZ00357 methyltransferase; Provisional
Probab=47.13 E-value=61 Score=36.96 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=40.9
Q ss_pred CCeEEEECCchhHHHHHHH--Hhhc--CCeeEEecCcHHHHHHHHHHHHHCCCC-------CCcEEEEEccCCC
Q 014664 116 KVKGFDIGTGANCIYPLLG--ASLL--GWSFVGSDMTDVALEWAEKNVKSNPHI-------SELIEIRKVDNSE 178 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La--~~~~--~~~vvavDIs~~AL~~A~~N~~~N~~l-------~~rI~l~~~d~~~ 178 (420)
...|+=+|+|=|-+--... .+.. ..+++|+|-++.++.+...+...+... .++|+++..|.+.
T Consensus 701 ~vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~ 774 (1072)
T PTZ00357 701 TLHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRT 774 (1072)
T ss_pred eEEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccc
Confidence 3578999999996432221 1222 468999999977766665554322223 4579999999764
No 292
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=45.69 E-value=38 Score=32.13 Aligned_cols=55 Identities=24% Similarity=0.059 Sum_probs=38.1
Q ss_pred eEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++|=.|.++ .|+..++.++ .+++|+.++.+++.++.+...++.. ..+.++..|..
T Consensus 2 ~vlItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~Dv~ 58 (259)
T PRK08340 2 NVLVTASSR-GIGFNVARELLKKGARVVISSRNEENLEKALKELKEY----GEVYAVKADLS 58 (259)
T ss_pred eEEEEcCCc-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc----CCceEEEcCCC
Confidence 356667654 4777777665 4789999999998887776666443 24677777753
No 293
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=43.31 E-value=53 Score=33.53 Aligned_cols=42 Identities=17% Similarity=-0.001 Sum_probs=30.8
Q ss_pred CeEEEECCch-hHHHHHHHHhhcCCeeEEecCcHHHHHHHHHH
Q 014664 117 VKGFDIGTGA-NCIYPLLGASLLGWSFVGSDMTDVALEWAEKN 158 (420)
Q Consensus 117 ~~vLDIGTGs-G~I~~~La~~~~~~~vvavDIs~~AL~~A~~N 158 (420)
.+||.+|+|+ |-+...++....-.+++++|.+++.++.+++.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 5789999877 55555566554333699999999998888764
No 294
>PRK06125 short chain dehydrogenase; Provisional
Probab=42.35 E-value=96 Score=29.24 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=39.5
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|+++| |+..++..+ .+++|++++.+++.++.+...+... ...++.++..|..
T Consensus 8 k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~D~~ 67 (259)
T PRK06125 8 KRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA--HGVDVAVHALDLS 67 (259)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCC
Confidence 46777786554 777766544 4789999999988877666666543 2346777777753
No 295
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=42.27 E-value=48 Score=34.70 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=31.6
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHH
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~ 161 (420)
.+||-| |++||-.+.+...-| .+|+|||+||.=+.+.+-.++.
T Consensus 37 d~vl~I-tSaG~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 37 DRVLTI-TSAGCNALDYLLAGP-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CeEEEE-ccCCchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHHHH
Confidence 478888 666887777755544 6899999999877776655543
No 296
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=41.92 E-value=48 Score=34.45 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=39.2
Q ss_pred CCCCCeEEEECCchhHHHHHHHHhh-------cCCeeEEecC----cHHHHHHHHHHHHH
Q 014664 113 NGDKVKGFDIGTGANCIYPLLGASL-------LGWSFVGSDM----TDVALEWAEKNVKS 161 (420)
Q Consensus 113 ~~~~~~vLDIGTGsG~I~~~La~~~-------~~~~vvavDI----s~~AL~~A~~N~~~ 161 (420)
+.+.+.|+|+|.|.|.=.+.|...+ |..+++|++- +...++.+.+++..
T Consensus 108 g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~ 167 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAE 167 (374)
T ss_pred cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHH
Confidence 3467899999999998877775543 3469999999 89999999888753
No 297
>PRK05599 hypothetical protein; Provisional
Probab=41.72 E-value=56 Score=30.90 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=38.1
Q ss_pred EEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 119 GFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 119 vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
+|=.|.++| |+..++.++ .+++++.++.+++.++-+.+.++..+ ...+.++..|..
T Consensus 3 vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~ 59 (246)
T PRK05599 3 ILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG--ATSVHVLSFDAQ 59 (246)
T ss_pred EEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc--CCceEEEEcccC
Confidence 565677665 677776544 36899999999988887766665542 234777777753
No 298
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=40.16 E-value=47 Score=34.41 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=43.5
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPS 182 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~ 182 (420)
...+|+|-|.|.+.-.+...+|. +-+++.|..-+-.++.+.. .+ |+.+-+|..+.+|.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq~~P~ 236 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQDTPK 236 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CC-----cceecccccccCCC
Confidence 47899999999998888875553 7788888888877777765 32 66677776665564
No 299
>PRK06940 short chain dehydrogenase; Provisional
Probab=40.10 E-value=83 Score=30.38 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=34.3
Q ss_pred chhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 125 GANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 125 GsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
|+|.|+..++.++ .+++|+++|.+++.++.+.+.++.. ..++.++..|..
T Consensus 9 Ga~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 59 (275)
T PRK06940 9 GAGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA---GFDVSTQEVDVS 59 (275)
T ss_pred CCChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEeecC
Confidence 3456888887665 3689999999988776655554432 235777877754
No 300
>PRK07102 short chain dehydrogenase; Provisional
Probab=39.96 E-value=1.4e+02 Score=27.76 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=39.1
Q ss_pred eEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
+++=.|+ +|.|+..++.++ .+++|++++.+++.++...+++...+ ..++.++..|..
T Consensus 3 ~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~ 61 (243)
T PRK07102 3 KILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG--AVAVSTHELDIL 61 (243)
T ss_pred EEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc--CCeEEEEecCCC
Confidence 4666774 455777776655 37899999999987765555554432 346888888754
No 301
>PRK08303 short chain dehydrogenase; Provisional
Probab=39.42 E-value=62 Score=32.16 Aligned_cols=58 Identities=12% Similarity=-0.008 Sum_probs=37.3
Q ss_pred CCeEEEECCchhHHHHHHHHhh--cCCeeEEecCcH----------HHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTD----------VALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~----------~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
...+|-.|.++| |+..++..+ .+++|+.++.+. +.++.+.+.++.. ..++.++..|..
T Consensus 8 ~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 77 (305)
T PRK08303 8 GKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA---GGRGIAVQVDHL 77 (305)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc---CCceEEEEcCCC
Confidence 357888897766 777777665 478999998873 3444444444433 235667777753
No 302
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=39.20 E-value=1.7e+02 Score=27.40 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=41.2
Q ss_pred CCeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..++|=.|.+ |.|+..++..+ .+++++.++.+++.++.....++..+ .++.++..|..
T Consensus 11 ~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 70 (256)
T PRK06124 11 GQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIA 70 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCC
Confidence 3578878854 45777777654 47999999999988776666665542 35778887754
No 303
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=39.13 E-value=62 Score=33.25 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=32.2
Q ss_pred CCCeEEEECCchhH-HHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHH
Q 014664 115 DKVKGFDIGTGANC-IYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (420)
Q Consensus 115 ~~~~vLDIGTGsG~-I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~ 161 (420)
.+.+|+-||+| || +.+.|+ +. ..+|..||+++.-+.+-+-.++.
T Consensus 63 ~ghrivtigSG-Gcn~L~yls-r~-Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 63 IGHRIVTIGSG-GCNMLAYLS-RA-PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCcEEEEecCC-cchHHHHhh-cC-CceeEEEeCCHHHHHHHHHHHHH
Confidence 45689999999 56 544443 43 46899999999988777666553
No 304
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=38.89 E-value=14 Score=37.87 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=10.6
Q ss_pred cEEEEEECCCcc
Q 014664 241 QFDFCICNPPFF 252 (420)
Q Consensus 241 ~FD~imcNPPF~ 252 (420)
..|+||+||||-
T Consensus 135 eADIVVTNPPFS 146 (336)
T PF13651_consen 135 EADIVVTNPPFS 146 (336)
T ss_pred cCCEEEeCCCcH
Confidence 589999999994
No 305
>PRK08339 short chain dehydrogenase; Provisional
Probab=37.88 E-value=1.7e+02 Score=27.94 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=40.9
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|=.|.++| |+..++.++ .+++|+.++.+++.++-+.+.+... ...++.++..|..
T Consensus 9 k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~ 68 (263)
T PRK08339 9 KLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSE--SNVDVSYIVADLT 68 (263)
T ss_pred CEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh--cCCceEEEEecCC
Confidence 46677776655 777777665 4789999999998887776666542 1246788888764
No 306
>PRK07063 short chain dehydrogenase; Provisional
Probab=37.19 E-value=1.9e+02 Score=27.18 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=41.6
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.++| |+..++..+ .+++|+.++.+++.++...+.+.... ...++.++..|..
T Consensus 8 k~vlVtGas~g-IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~ 68 (260)
T PRK07063 8 KVALVTGAAQG-IGAAIARAFAREGAAVALADLDAALAERAAAAIARDV-AGARVLAVPADVT 68 (260)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEEccCC
Confidence 46888887654 777776655 47899999999988877766665421 2346788887754
No 307
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.05 E-value=67 Score=33.31 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=32.5
Q ss_pred CeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHH
Q 014664 117 VKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~ 157 (420)
-++|=+|+|.=.++..|.++-.+ .+|+.+|+++..|+.|++
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 47999999875555555555444 689999999999999988
No 308
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=36.92 E-value=9.5 Score=38.95 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=44.5
Q ss_pred CeEEEECCchhHHHH-HHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYP-LLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~-~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..|+|+=.|-|-.-. .|- +.....|+|.|++|.+++.-++|++.|+ ..++..++.+|.+
T Consensus 196 eviVDLYAGIGYFTlpflV-~agAk~V~A~EwNp~svEaLrR~~~~N~-V~~r~~i~~gd~R 255 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLV-TAGAKTVFACEWNPWSVEALRRNAEANN-VMDRCRITEGDNR 255 (351)
T ss_pred chhhhhhcccceEEeehhh-ccCccEEEEEecCHHHHHHHHHHHHhcc-hHHHHHhhhcccc
Confidence 468888888884322 222 2233579999999999999999999995 8888888878754
No 309
>PRK06172 short chain dehydrogenase; Provisional
Probab=35.98 E-value=1.9e+02 Score=26.93 Aligned_cols=57 Identities=14% Similarity=-0.011 Sum_probs=41.7
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|+++ .|+..++.++ .+++|++++.+++.++-+.+.++.. ..++.++..|..
T Consensus 8 k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 66 (253)
T PRK06172 8 KVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGGEETVALIREA---GGEALFVACDVT 66 (253)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEcCCC
Confidence 5788888654 5777777655 3689999999998877766666543 246888888864
No 310
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.87 E-value=72 Score=33.10 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=32.6
Q ss_pred CeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHH
Q 014664 117 VKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~ 157 (420)
.++.=+|.|+=.++.+.+++..+ .+++|+||+++-.+.|++
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 46777888876666677777766 589999999999998865
No 311
>PRK07677 short chain dehydrogenase; Provisional
Probab=35.80 E-value=1.9e+02 Score=27.11 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=39.0
Q ss_pred eEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++|=.|++.| |+..++..+ .++++++++.++..++.+...+... ..++.++..|..
T Consensus 3 ~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 60 (252)
T PRK07677 3 VVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF---PGQVLTVQMDVR 60 (252)
T ss_pred EEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEecCC
Confidence 5777777665 677666554 4789999999988777665555433 246888888754
No 312
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=35.69 E-value=2.1e+02 Score=26.49 Aligned_cols=57 Identities=18% Similarity=0.091 Sum_probs=40.1
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|+ +|.|+..++.++ .+++|++++.++..++.....+... ..++.++..|..
T Consensus 8 ~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 66 (239)
T PRK07666 8 KNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY---GVKVVIATADVS 66 (239)
T ss_pred CEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---CCeEEEEECCCC
Confidence 46777885 566888887654 4789999999988776655555433 246888888753
No 313
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=35.60 E-value=2.1e+02 Score=26.90 Aligned_cols=57 Identities=18% Similarity=0.055 Sum_probs=41.6
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.| |+|.|+..++.++ .+++|+.++.++..++.+...+... ..++.++..|..
T Consensus 13 k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~---~~~~~~~~~Dl~ 71 (259)
T PRK08213 13 KTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL---GIDALWIAADVA 71 (259)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEccCC
Confidence 4677777 5667888888765 4789999999988877776666543 246777877754
No 314
>PRK05867 short chain dehydrogenase; Provisional
Probab=35.01 E-value=2.1e+02 Score=26.78 Aligned_cols=57 Identities=14% Similarity=0.013 Sum_probs=40.9
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|=.|.++| |+..++.++ .+++|++++.+++.++.....++..+ .++.++..|..
T Consensus 10 k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~ 68 (253)
T PRK05867 10 KRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG---GKVVPVCCDVS 68 (253)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCC
Confidence 47888887665 777777665 37899999999988877666665432 35777777753
No 315
>PRK07326 short chain dehydrogenase; Provisional
Probab=34.37 E-value=1.9e+02 Score=26.51 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=39.1
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|=+|. +|-|+..++.++ .+++|++++.++..++.....+... .++.++..|..
T Consensus 7 ~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~D~~ 64 (237)
T PRK07326 7 KVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK----GNVLGLAADVR 64 (237)
T ss_pred CEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc----CcEEEEEccCC
Confidence 46888885 556777777654 3789999999998776665554421 35778877753
No 316
>PRK07814 short chain dehydrogenase; Provisional
Probab=34.01 E-value=2.1e+02 Score=27.12 Aligned_cols=57 Identities=9% Similarity=0.111 Sum_probs=40.1
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|. +|.|+..++..+ .+++|++++.+++.++...+.+... ..++.++..|..
T Consensus 11 ~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 69 (263)
T PRK07814 11 QVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA---GRRAHVVAADLA 69 (263)
T ss_pred CEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 46888885 455787777654 4799999999988877665555432 246788877754
No 317
>PRK06949 short chain dehydrogenase; Provisional
Probab=33.97 E-value=2.3e+02 Score=26.34 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=40.6
Q ss_pred CCeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..++|=.|. +|.|+..++..+ .+++|++++.+++.++.....+... ..++.++..|..
T Consensus 9 ~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 68 (258)
T PRK06949 9 GKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE---GGAAHVVSLDVT 68 (258)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEecCC
Confidence 357888884 455888877665 4789999999998877666655433 235777777753
No 318
>PRK07791 short chain dehydrogenase; Provisional
Probab=33.66 E-value=85 Score=30.56 Aligned_cols=57 Identities=14% Similarity=0.006 Sum_probs=36.7
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcH---------HHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTD---------VALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~---------~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|=.|.++| |+..++.++ .+++++.+|.+. +.++.+...++.. ..++.++..|..
T Consensus 7 k~~lITGas~G-IG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 74 (286)
T PRK07791 7 RVVIVTGAGGG-IGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA---GGEAVANGDDIA 74 (286)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc---CCceEEEeCCCC
Confidence 47888887765 777777655 478899888765 5555444444433 235667777653
No 319
>PRK07576 short chain dehydrogenase; Provisional
Probab=33.53 E-value=2.2e+02 Score=27.04 Aligned_cols=57 Identities=9% Similarity=-0.035 Sum_probs=38.2
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|. +|.|+..++..+ .+++|++++.+++.++-....+... ..++.++..|..
T Consensus 10 k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 68 (264)
T PRK07576 10 KNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA---GPEGLGVSADVR 68 (264)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh---CCceEEEECCCC
Confidence 46788884 556887777654 4789999999988766554444432 235677777753
No 320
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=33.44 E-value=3.5e+02 Score=29.45 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=36.6
Q ss_pred CeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH-HHHHCCCCCCcEEEEEcc
Q 014664 117 VKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK-NVKSNPHISELIEIRKVD 175 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~-N~~~N~~l~~rI~l~~~d 175 (420)
.+++-+|||..-|+..+-.- .--.++-+|+|+.+++.... |+..+ ..+.+...|
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~----~~~~~~~~d 104 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKER----PEMQMVEMD 104 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCC----cceEEEEec
Confidence 48999999999776544322 12469999999999988754 44333 235555554
No 321
>PRK05872 short chain dehydrogenase; Provisional
Probab=33.32 E-value=75 Score=31.05 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=36.4
Q ss_pred CCeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..++|=.|.++| |+..++..+ .+++++.++.+++.++...+.+.. ...+..+..|.
T Consensus 9 gk~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~----~~~~~~~~~Dv 66 (296)
T PRK05872 9 GKVVVVTGAARG-IGAELARRLHARGAKLALVDLEEAELAALAAELGG----DDRVLTVVADV 66 (296)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC----CCcEEEEEecC
Confidence 347888886655 777777655 478999999998877655443321 23455555664
No 322
>PRK08251 short chain dehydrogenase; Provisional
Probab=33.25 E-value=2.3e+02 Score=26.32 Aligned_cols=58 Identities=10% Similarity=0.030 Sum_probs=40.1
Q ss_pred eEEEECCchhHHHHHHHHhhc--CCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASLL--GWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~~--~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++|=.|. +|.|+..++.++. +++++.++.+++.++.....+.... -..++.++..|..
T Consensus 4 ~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 63 (248)
T PRK08251 4 KILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY-PGIKVAVAALDVN 63 (248)
T ss_pred EEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEEcCCC
Confidence 5777774 5568888877653 6899999999988776655554321 1346888888754
No 323
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=32.90 E-value=82 Score=32.87 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=33.4
Q ss_pred CeEEEECCchhHHHHHHHHhhcC-CeeEEecCcHHHHHHHHH
Q 014664 117 VKGFDIGTGANCIYPLLGASLLG-WSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~~~-~~vvavDIs~~AL~~A~~ 157 (420)
.++.=+|+|.=.++.+.+++..+ -+++|+|++++-+++|++
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 46888888876666777777766 489999999999999975
No 324
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=32.83 E-value=84 Score=29.75 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=35.5
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|+++| |+..++.++ .++++++++.+.. +-+.+.++.. ..++.++..|..
T Consensus 9 k~~lItGas~g-IG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dl~ 65 (251)
T PRK12481 9 KVAIITGCNTG-LGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL---GRKFHFITADLI 65 (251)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc---CCeEEEEEeCCC
Confidence 57888887665 787877655 4789999887642 2223333332 346778888754
No 325
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=32.75 E-value=2e+02 Score=27.10 Aligned_cols=57 Identities=16% Similarity=0.076 Sum_probs=38.8
Q ss_pred EEEECCchhHHHHHHHHhh------cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 119 GFDIGTGANCIYPLLGASL------LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 119 vLDIGTGsG~I~~~La~~~------~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
+|=.|+++| |+..++.++ .+++|+.++.+++.++.+.+.++... -..++.++..|..
T Consensus 3 vlItGas~G-IG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~v~~~~~Dl~ 65 (256)
T TIGR01500 3 CLVTGASRG-FGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAER-SGLRVVRVSLDLG 65 (256)
T ss_pred EEEecCCCc-hHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcC-CCceEEEEEeccC
Confidence 566676655 676666543 47899999999998887777665421 1235777777754
No 326
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=32.48 E-value=1.4e+02 Score=27.54 Aligned_cols=42 Identities=24% Similarity=0.113 Sum_probs=26.8
Q ss_pred EEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHH
Q 014664 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (420)
Q Consensus 120 LDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~ 161 (420)
.=||+|.=.-++.......+.+|+..|.++++++.+++.++.
T Consensus 3 ~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 3 AVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 345665432222222234589999999999999999888775
No 327
>PRK08589 short chain dehydrogenase; Validated
Probab=32.31 E-value=1e+02 Score=29.54 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=35.6
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.++| |+..++.++ .++++++++.+ +.++-..+.++.. ..++.++..|..
T Consensus 7 k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~---~~~~~~~~~Dl~ 64 (272)
T PRK08589 7 KVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN---GGKAKAYHVDIS 64 (272)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc---CCeEEEEEeecC
Confidence 36776777655 677777655 47999999999 4444433444332 235777777753
No 328
>PRK07454 short chain dehydrogenase; Provisional
Probab=31.79 E-value=2.8e+02 Score=25.63 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=39.1
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|. +|.|+..++.++ .+++|++++.+++.++.....++. ...++.++..|..
T Consensus 7 k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~ 65 (241)
T PRK07454 7 PRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS---TGVKAAAYSIDLS 65 (241)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---CCCcEEEEEccCC
Confidence 46788885 566777777665 468999999998776555444433 2346888888754
No 329
>PRK06181 short chain dehydrogenase; Provisional
Probab=31.55 E-value=2.5e+02 Score=26.36 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=37.8
Q ss_pred eEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++|=.|+. |.|+..++..+ .+++|++++.++..++.+...+... ..++.++..|..
T Consensus 3 ~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~ 60 (263)
T PRK06181 3 VVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH---GGEALVVPTDVS 60 (263)
T ss_pred EEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 46666644 45777776544 4689999999988777666555543 246777777754
No 330
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=31.37 E-value=1.6e+02 Score=29.80 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhcCCcEEEecCCceeCCCCCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHh--hc
Q 014664 61 TRELTRVLLLHDHGLNWWIPDGQLCPTVPNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGAS--LL 138 (420)
Q Consensus 61 ~r~Lt~aLL~~ffgl~~~vp~g~LiPrvP~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~--~~ 138 (420)
..++.+.|. +..+..+.+|++.-.|- +..-|.....+++.... .. ...-...++.+|||.-+.++..+.+ .+
T Consensus 137 ~~~~~~~l~-~~~~~~~~~p~~~~n~~--~~~g~~~~~~EI~~q~~--~~-~~~~d~vv~~vGtGGt~aGi~~~lk~~~~ 210 (329)
T PRK14045 137 AEEVAEELK-GEGRKPYIIPPGGASPV--GTLGYVRAVGEIATQVK--KL-GVRFDSIVVAVGSGGTLAGLSLGLAILNA 210 (329)
T ss_pred HHHHHHHHH-hcCCCEEEECCCCCchh--HHHHHHHHHHHHHHHHH--hc-CCCCCEEEEeCCcHHHHHHHHHHHHHhCC
Confidence 344444433 34445567788775553 45555544445554321 00 0011246788888877666666554 46
Q ss_pred CCeeEEecCcH
Q 014664 139 GWSFVGSDMTD 149 (420)
Q Consensus 139 ~~~vvavDIs~ 149 (420)
+.+|+|+|+..
T Consensus 211 ~~kVigv~~~~ 221 (329)
T PRK14045 211 EWRVVGIAVGS 221 (329)
T ss_pred CCeEEEEEecC
Confidence 78999999965
No 331
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=30.84 E-value=1.1e+02 Score=33.52 Aligned_cols=104 Identities=19% Similarity=0.137 Sum_probs=59.3
Q ss_pred CCCccccCCCHHHHHHHHHHHhhhcCCc-EEEecCCceeCCCC------------CcHhHHHHHH--HHHccCCCCC--C
Q 014664 48 DGRPRIDWTDFNATRELTRVLLLHDHGL-NWWIPDGQLCPTVP------------NRSNYIHWIE--DLLSSNIIPT--T 110 (420)
Q Consensus 48 ~g~~~IDf~d~~a~r~Lt~aLL~~ffgl-~~~vp~g~LiPrvP------------~R~nyi~wi~--dll~~~~~~~--~ 110 (420)
.|..-|-|-++..-.+|.++|++.---. .++. +||+. |=+-|---++ ..+... .+. +
T Consensus 85 ~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~-----vpr~sraq~~d~lssma~IAGy~Av~~aa~~~~~~-~~g~~t 158 (509)
T PRK09424 85 EGATLVSFIWPAQNPELLEKLAARGVTVLAMDA-----VPRISRAQSLDALSSMANIAGYRAVIEAAHEFGRF-FTGQIT 158 (509)
T ss_pred CCCEEEEEeCcccCHHHHHHHHHcCCEEEEeec-----ccccccCCCcccccchhhhhHHHHHHHHHHHhccc-CCCcee
Confidence 4666677777777788888887653322 3432 34321 1111222221 122211 010 0
Q ss_pred -CCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHH
Q 014664 111 -SRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 111 -~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~ 157 (420)
...-.+.+|+=+|+|.=.+..+..++..+++|+++|++++.++.|++
T Consensus 159 aaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 159 AAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred ccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 00113568999999875555555556677899999999999998875
No 332
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=30.69 E-value=1.2e+02 Score=28.63 Aligned_cols=58 Identities=5% Similarity=-0.134 Sum_probs=36.0
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEec-CcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSD-MTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavD-Is~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.++| |+..++.++ .+++|+.+. .+++.++...+.++.. ...++.++..|..
T Consensus 9 k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~ 69 (260)
T PRK08416 9 KTLVISGGTRG-IGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK--YGIKAKAYPLNIL 69 (260)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh--cCCceEEEEcCCC
Confidence 46777777665 777777655 478888774 4566655544444332 2346778887754
No 333
>PRK06197 short chain dehydrogenase; Provisional
Probab=30.36 E-value=1.3e+02 Score=29.40 Aligned_cols=59 Identities=12% Similarity=-0.023 Sum_probs=39.1
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.. |.|+..++..+ .+++++.++.+++..+.+.+.+.... -..++.++..|..
T Consensus 17 k~vlItGas-~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~ 77 (306)
T PRK06197 17 RVAVVTGAN-TGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT-PGADVTLQELDLT 77 (306)
T ss_pred CEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-CCCceEEEECCCC
Confidence 467766654 45787777654 37899999999887776665554321 1245778877754
No 334
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=30.26 E-value=2.8e+02 Score=25.96 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=40.6
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|. +|.|+..++.++ .+++|++++.+++.++.....++..+ .++.++..|..
T Consensus 11 k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~D~~ 69 (255)
T PRK07523 11 RRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG---LSAHALAFDVT 69 (255)
T ss_pred CEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEEccCC
Confidence 47887784 566888887765 47899999999988776666665432 35777777754
No 335
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=29.01 E-value=88 Score=26.13 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=22.6
Q ss_pred hHHHHHHHHhhcCCeeEEecCcHHHHHHHHH
Q 014664 127 NCIYPLLGASLLGWSFVGSDMTDVALEWAEK 157 (420)
Q Consensus 127 G~I~~~La~~~~~~~vvavDIs~~AL~~A~~ 157 (420)
|...+.++... +.+++++|.+++-++.|++
T Consensus 3 G~~a~q~ak~~-G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 3 GLMAIQLAKAM-GAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHT-TSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCEEEEEECCHHHHHHHHh
Confidence 44445566544 5999999999999988864
No 336
>PRK05855 short chain dehydrogenase; Validated
Probab=28.59 E-value=74 Score=33.60 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=56.0
Q ss_pred ecCCceeCCCCCcHhHHHHHHHHHccCCC----C--------CCCCCCCCCeEEEECCchhHHHHHHHHhh--cCCeeEE
Q 014664 79 IPDGQLCPTVPNRSNYIHWIEDLLSSNII----P--------TTSRNGDKVKGFDIGTGANCIYPLLGASL--LGWSFVG 144 (420)
Q Consensus 79 vp~g~LiPrvP~R~nyi~wi~dll~~~~~----~--------~~~~~~~~~~vLDIGTGsG~I~~~La~~~--~~~~vva 144 (420)
++-|+..+. ..-..+...|.+.+....- + .....-...++|=+|. +|.|+..++.++ .+++|+.
T Consensus 267 ~~~gH~~~~-e~p~~~~~~i~~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~ 344 (582)
T PRK05855 267 IKAGHWLPM-SHPQVLAAAVAEFVDAVEGGPPARALLRARVGRPRGPFSGKLVVVTGA-GSGIGRETALAFAREGAEVVA 344 (582)
T ss_pred ccCCCcchh-hChhHHHHHHHHHHHhccCCCchHHHHHhhhccccccCCCCEEEEECC-cCHHHHHHHHHHHHCCCEEEE
Confidence 344665553 4445566666666653210 0 0001112245666666 455888887765 4789999
Q ss_pred ecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 145 SDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 145 vDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++.+...++.+.+.++..+ .++.++..|..
T Consensus 345 ~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~ 374 (582)
T PRK05855 345 SDIDEAAAERTAELIRAAG---AVAHAYRVDVS 374 (582)
T ss_pred EeCCHHHHHHHHHHHHhcC---CeEEEEEcCCC
Confidence 9999988877666665432 35788888754
No 337
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=28.48 E-value=3.1e+02 Score=25.89 Aligned_cols=57 Identities=11% Similarity=-0.036 Sum_probs=41.8
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|+++| |+..++.++ .+++++.++.+++.++.+..+++..+ .++.++..|..
T Consensus 11 k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~ 69 (265)
T PRK07097 11 KIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG---IEAHGYVCDVT 69 (265)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCC
Confidence 46888888765 676666554 47899999999988887777766532 36888888754
No 338
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=28.41 E-value=91 Score=25.72 Aligned_cols=44 Identities=20% Similarity=0.073 Sum_probs=27.9
Q ss_pred CchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 124 TGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 124 TGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
||.|-++..++..+ .++.++.+|.+++.++.++. . .+.++.+|.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~-----~~~~i~gd~ 49 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E-----GVEVIYGDA 49 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T-----TSEEEES-T
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c-----ccccccccc
Confidence 34455666666544 34689999999998766642 2 156777774
No 339
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=28.10 E-value=2.3e+02 Score=28.42 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=50.3
Q ss_pred CCcHhHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHH
Q 014664 89 PNRSNYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNV 159 (420)
Q Consensus 89 P~R~nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~ 159 (420)
++|.....+|.+.|.....+. .....+.+||==|||-|-++--+|.+ +..+.|.|.|--|+-..+--+
T Consensus 31 ~ER~~~~~~I~~~L~~~~p~~-~~~~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 31 EERDPCYSPILDELESLFPPA-GSDRSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFIL 98 (270)
T ss_pred HHHHHHHHHHHHHHHHhhccc-ccCCCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHH
Confidence 467777777777777543221 12335689999999999988888766 778999999999987776644
No 340
>PRK07904 short chain dehydrogenase; Provisional
Probab=27.81 E-value=2.6e+02 Score=26.59 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=41.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhh--c-CCeeEEecCcHHH-HHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASL--L-GWSFVGSDMTDVA-LEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~--~-~~~vvavDIs~~A-L~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
...++|=.|+++| |+..++.++ . +++|++++.+++. ++.+.+.++..+ ..++.++..|..
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~--~~~v~~~~~D~~ 70 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG--ASSVEVIDFDAL 70 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC--CCceEEEEecCC
Confidence 3457888898665 788887654 2 4899999998775 665555555442 236888888753
No 341
>PRK07062 short chain dehydrogenase; Provisional
Probab=27.47 E-value=3.1e+02 Score=25.78 Aligned_cols=59 Identities=15% Similarity=-0.005 Sum_probs=40.9
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|=.|+++| |+..++.++ .+++|++++.+++.++.+...+.... -..++.++..|..
T Consensus 9 k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 69 (265)
T PRK07062 9 RVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKF-PGARLLAARCDVL 69 (265)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEEecCC
Confidence 46888886655 777777665 47899999999988877666554321 1235777777754
No 342
>PRK06194 hypothetical protein; Provisional
Probab=26.85 E-value=2e+02 Score=27.43 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=38.3
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.+ |.|+..++.++ .+++|+.+|.+++.++-....+... ..++.++..|..
T Consensus 7 k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 65 (287)
T PRK06194 7 KVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ---GAEVLGVRTDVS 65 (287)
T ss_pred CEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---CCeEEEEECCCC
Confidence 467766644 55788777654 4789999999988776555444432 235777888754
No 343
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.63 E-value=3.2e+02 Score=27.96 Aligned_cols=58 Identities=17% Similarity=0.089 Sum_probs=45.2
Q ss_pred CCCeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 115 DKVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.+..||==|.|+| ++-.++.++ .+.+++..||+++..+...+.++.++ ++.....|..
T Consensus 37 ~g~~vLITGgg~G-lGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis 96 (300)
T KOG1201|consen 37 SGEIVLITGGGSG-LGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG----EAKAYTCDIS 96 (300)
T ss_pred cCCEEEEeCCCch-HHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC----ceeEEEecCC
Confidence 3457888899998 677777655 36789999999999999888888763 6777777754
No 344
>PRK09242 tropinone reductase; Provisional
Probab=26.61 E-value=3.7e+02 Score=25.13 Aligned_cols=59 Identities=15% Similarity=0.031 Sum_probs=41.4
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|+++ .|+..++.++ .+++++.++.+++.++....++.... -..++.++..|..
T Consensus 10 k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~Dl~ 70 (257)
T PRK09242 10 QTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF-PEREVHGLAADVS 70 (257)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC-CCCeEEEEECCCC
Confidence 4677788765 4777777655 37899999999988877766665431 1346788888754
No 345
>PRK05876 short chain dehydrogenase; Provisional
Probab=26.58 E-value=3.3e+02 Score=26.24 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=39.6
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|=.|.++| |+..++.++ .+++|+.+|.++..++.+.+.++.. ..++.++..|..
T Consensus 7 k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~---~~~~~~~~~Dv~ 65 (275)
T PRK05876 7 RGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE---GFDVHGVMCDVR 65 (275)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEeCCCC
Confidence 46787777655 777777654 4789999999998877665555433 235777777754
No 346
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=26.57 E-value=1.4e+02 Score=27.61 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=30.6
Q ss_pred hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCc
Q 014664 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMT 148 (420)
Q Consensus 93 nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs 148 (420)
+.+.|+.+.... -..-|||+|=|.|=-|--|-..+|+-+++..|--
T Consensus 16 ~~L~~a~~~v~~----------~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 16 DCLNWAAAQVAG----------LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHTTT------------S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHHHhcC----------CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 456788777653 2356999999999999888888898888888864
No 347
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=26.28 E-value=2.3e+02 Score=26.31 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=39.8
Q ss_pred eEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++|=.|. +|.|+..++.++ .++++++++.+++.++.+...++.. ..++.++..|..
T Consensus 6 ~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 63 (258)
T PRK12429 6 VALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA---GGKAIGVAMDVT 63 (258)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 5665554 456788877765 3789999999998887776666543 246888888754
No 348
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=26.09 E-value=3.6e+02 Score=25.20 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=37.8
Q ss_pred eEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++|=.|.+ |.|+..++..+ .+++++.+|.++..++.....+.... -..++.++..|..
T Consensus 4 ~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 63 (259)
T PRK12384 4 VAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY-GEGMAYGFGADAT 63 (259)
T ss_pred EEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc-CCceeEEEEccCC
Confidence 57778854 56777777654 47899999999887765544443210 1135778887753
No 349
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=25.92 E-value=2.2e+02 Score=27.88 Aligned_cols=60 Identities=12% Similarity=0.033 Sum_probs=36.9
Q ss_pred CCeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..++|=.| |+|.|+..|+.++ .+++|+++..++.....+.......+ ...+++++..|..
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 66 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG-AKERLKLFKADLL 66 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC-CCCceEEEeCCCC
Confidence 35778777 5678888887765 36888888777655433322111111 2246788887754
No 350
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=25.71 E-value=34 Score=31.92 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=7.7
Q ss_pred EEEECCCcc
Q 014664 244 FCICNPPFF 252 (420)
Q Consensus 244 ~imcNPPF~ 252 (420)
-|-|||||-
T Consensus 64 ~vf~NPPYS 72 (166)
T TIGR01712 64 AVWLNPPYS 72 (166)
T ss_pred eEEecCCCC
Confidence 599999993
No 351
>PRK07035 short chain dehydrogenase; Provisional
Probab=25.54 E-value=3.9e+02 Score=24.79 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=39.0
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|+++| |+..++..+ .+++|++++.+++.++...+.+... ..++.++..|..
T Consensus 9 k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 67 (252)
T PRK07035 9 KIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA---GGKAEALACHIG 67 (252)
T ss_pred CEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEcCCC
Confidence 45777777655 777777654 4789999999988877665555433 234667777753
No 352
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.50 E-value=1.1e+02 Score=29.09 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=35.2
Q ss_pred CeEEEECCch-hHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGA-NCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGs-G~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|=.|.++ +.|+..++.++ .+++|+.++.+++..+.+++-.+.. . .+.++..|.
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~-~~~~~~~D~ 69 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---D-APIFLPLDV 69 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---c-cceEEecCc
Confidence 4788888776 36888777665 4789999999876554444333322 1 234555664
No 353
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=25.50 E-value=3.1e+02 Score=25.51 Aligned_cols=58 Identities=14% Similarity=0.010 Sum_probs=38.8
Q ss_pred CCeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..++|=.|. +|.|+..++..+ .+++|+++|.+++.++.....++..+ ..++.++..|.
T Consensus 12 ~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~d~ 71 (247)
T PRK08945 12 DRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG--GPQPAIIPLDL 71 (247)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEecc
Confidence 346788884 556777777654 47899999999988766655555432 23566666654
No 354
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=24.66 E-value=51 Score=34.72 Aligned_cols=19 Identities=11% Similarity=0.088 Sum_probs=15.1
Q ss_pred CCeEEEECCchhHHHHHHH
Q 014664 116 KVKGFDIGTGANCIYPLLG 134 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La 134 (420)
...|+|+|||+|...+++.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 5789999999997765544
No 355
>PRK08862 short chain dehydrogenase; Provisional
Probab=24.58 E-value=3.8e+02 Score=25.10 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=40.0
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|=.|+++| |+..++.++ .+++|+.++.+++.++-+.+.++..+ ..+..+..|.
T Consensus 6 k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~D~ 63 (227)
T PRK08862 6 SIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT---DNVYSFQLKD 63 (227)
T ss_pred eEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CCeEEEEccC
Confidence 46888888886 677777655 57899999999998877766665542 3455555654
No 356
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.30 E-value=4.2e+02 Score=24.33 Aligned_cols=57 Identities=12% Similarity=-0.025 Sum_probs=39.5
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|++ |.|+..++..+ .+++++.+|.++..++.+...++.. ..++.++..|..
T Consensus 6 ~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 64 (253)
T PRK08217 6 KVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL---GTEVRGYAANVT 64 (253)
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEcCCC
Confidence 467777754 55787777654 3689999999988777666655543 246777777753
No 357
>PRK06196 oxidoreductase; Provisional
Probab=24.28 E-value=1.7e+02 Score=28.78 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=35.2
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.+ |.|+..++.++ .+++|++++.+++.++.+...+. .+.++..|..
T Consensus 27 k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-------~v~~~~~Dl~ 81 (315)
T PRK06196 27 KTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-------GVEVVMLDLA 81 (315)
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-------hCeEEEccCC
Confidence 467777754 55888877665 47899999999876654433321 2566777753
No 358
>PRK07890 short chain dehydrogenase; Provisional
Probab=24.26 E-value=4.1e+02 Score=24.64 Aligned_cols=57 Identities=14% Similarity=-0.001 Sum_probs=39.4
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.++ .|+..++..+ .+++|+.++.++..++.+..-+... ..++.++..|..
T Consensus 6 k~vlItGa~~-~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 64 (258)
T PRK07890 6 KVVVVSGVGP-GLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL---GRRALAVPTDIT 64 (258)
T ss_pred CEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh---CCceEEEecCCC
Confidence 4677777654 5777777655 4799999999998776665555433 245778887754
No 359
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=24.09 E-value=27 Score=29.89 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=9.0
Q ss_pred EEEECCchhHH
Q 014664 119 GFDIGTGANCI 129 (420)
Q Consensus 119 vLDIGTGsG~I 129 (420)
-+|||||.|--
T Consensus 6 NIDIGcG~GNT 16 (124)
T PF07101_consen 6 NIDIGCGAGNT 16 (124)
T ss_pred ccccccCCCcc
Confidence 47999999954
No 360
>PLN02780 ketoreductase/ oxidoreductase
Probab=24.00 E-value=3e+02 Score=27.53 Aligned_cols=58 Identities=17% Similarity=0.046 Sum_probs=40.3
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
..+|=.|+++| |+..++.++ .+++|+.++.+++.++...+.++... -..++..+..|.
T Consensus 54 ~~~lITGAs~G-IG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~-~~~~~~~~~~Dl 113 (320)
T PLN02780 54 SWALVTGPTDG-IGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY-SKTQIKTVVVDF 113 (320)
T ss_pred CEEEEeCCCcH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC-CCcEEEEEEEEC
Confidence 46888886655 787777765 47899999999999887777665431 123466666664
No 361
>PRK05866 short chain dehydrogenase; Provisional
Probab=23.82 E-value=4e+02 Score=26.00 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=39.9
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.++| |+..++..+ .+++|++++.+++.++-..+.+... ...+.++..|..
T Consensus 41 k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~---~~~~~~~~~Dl~ 99 (293)
T PRK05866 41 KRILLTGASSG-IGEAAAEQFARRGATVVAVARREDLLDAVADRITRA---GGDAMAVPCDLS 99 (293)
T ss_pred CEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 46777776554 777777654 4789999999998877666655432 235777777754
No 362
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=23.75 E-value=4.6e+02 Score=24.10 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=40.0
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|++ |.|+..++.++ .+++|++++.+.+....+...+... ..++.++..|..
T Consensus 4 ~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~d~~ 62 (250)
T TIGR03206 4 KTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK---GGNAQAFACDIT 62 (250)
T ss_pred CEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 467777754 45777777654 3689999999998877666666543 246888888754
No 363
>PRK06914 short chain dehydrogenase; Provisional
Probab=23.38 E-value=4.2e+02 Score=25.08 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=38.7
Q ss_pred eEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.+|=.|.+ |.|+..++..+ .+++|++++.+++.++.....+...+ ...++.++..|..
T Consensus 5 ~~lItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 64 (280)
T PRK06914 5 IAIVTGAS-SGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN-LQQNIKVQQLDVT 64 (280)
T ss_pred EEEEECCC-chHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-CCCceeEEecCCC
Confidence 56777754 45777776544 37899999998887766555444332 3456888888864
No 364
>PRK07478 short chain dehydrogenase; Provisional
Probab=23.36 E-value=4.5e+02 Score=24.47 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=40.0
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.+.| |+..++..+ .++++++++.+++.++.+...++..+ .++.++..|..
T Consensus 7 k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~ 65 (254)
T PRK07478 7 KVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG---GEAVALAGDVR 65 (254)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCC
Confidence 36776676654 777777655 37899999999988887766665432 35777777754
No 365
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.22 E-value=1.7e+02 Score=27.47 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=35.5
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.++| |+..++..+ .+++++.++.+ ..++.+.+-+... ..++.++..|..
T Consensus 16 k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~D~~ 73 (258)
T PRK06935 16 KVAIVTGGNTG-LGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE---GRKVTFVQVDLT 73 (258)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc---CCceEEEEcCCC
Confidence 46777887665 777777654 47899999887 3333343333332 245778877754
No 366
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.05 E-value=99 Score=30.63 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=27.7
Q ss_pred CCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHH
Q 014664 115 DKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEW 154 (420)
Q Consensus 115 ~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~ 154 (420)
+...+||||.-+|...-.+. +.....|+|+|+.-.-|.+
T Consensus 79 k~kv~LDiGsSTGGFTd~lL-q~gAk~VyavDVG~~Ql~~ 117 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLL-QRGAKHVYAVDVGYGQLHW 117 (245)
T ss_pred CCCEEEEecCCCccHHHHHH-HcCCcEEEEEEccCCccCH
Confidence 45689999999998754333 3344689999997654444
No 367
>PRK05650 short chain dehydrogenase; Provisional
Probab=22.99 E-value=3.9e+02 Score=25.27 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=38.4
Q ss_pred eEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++|=.|+. |.|+..++..+ .+++|+.++.+++.++.+...++.. ..++.++..|..
T Consensus 2 ~vlVtGas-ggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 59 (270)
T PRK05650 2 RVMITGAA-SGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA---GGDGFYQRCDVR 59 (270)
T ss_pred EEEEecCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEccCC
Confidence 45666654 45777777654 3789999999988877766666543 245777777753
No 368
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=22.83 E-value=1.7e+02 Score=27.26 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=18.2
Q ss_pred EECCchhHHHHHHHH--hhcCCeeEEecCcHHHHHH
Q 014664 121 DIGTGANCIYPLLGA--SLLGWSFVGSDMTDVALEW 154 (420)
Q Consensus 121 DIGTGsG~I~~~La~--~~~~~~vvavDIs~~AL~~ 154 (420)
=||.|- +++.+|. ...+.+|+|+|+|++-++.
T Consensus 5 ViGlGy--vGl~~A~~lA~~G~~V~g~D~~~~~v~~ 38 (185)
T PF03721_consen 5 VIGLGY--VGLPLAAALAEKGHQVIGVDIDEEKVEA 38 (185)
T ss_dssp EE--ST--THHHHHHHHHHTTSEEEEE-S-HHHHHH
T ss_pred EECCCc--chHHHHHHHHhCCCEEEEEeCChHHHHH
Confidence 355554 4444444 3467999999999986554
No 369
>PF01481 Arteri_nucleo: Arterivirus nucleocapsid protein; InterPro: IPR002484 Arterivirus are ssRNA positive-strand viruses with no DNA stage in their replication cycle. This family contains the viral nucleocapsid protein, which encapsidates the viral ssRNA. Porcine reproductive and respiratory syndrome virus (PRRSV) is the causative agent of both severe and persistent respiratory disease and reproductive failure in pigs worldwide. The PRRSV virion contains a core made of the 123 amino acid nucleocapsid (N or VP1) protein, a product of the ORF7 gene. The crystal structure of the capsid-forming domain of the nucleocapsid protein has been determined to 2.6 A resolution. The protein exists as a tight dimer forming a four-stranded beta sheet floor superposed by two long alpha helices and flanked by two N- and two C-terminal alpha helices. The structure represents a new class of viral capsid-forming domains, distinctly different from those of other known enveloped viruses, but reminiscent of the coat protein of bacteriophage MS2 [].; GO: 0019013 viral nucleocapsid; PDB: 2I9F_C 1P65_A.
Probab=22.81 E-value=81 Score=27.67 Aligned_cols=45 Identities=33% Similarity=0.381 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHhhcCCcccccCc---eeEEEeeccCcchhhhhhccc
Q 014664 375 ALDVLQSIETFFSASGASCKLNAS---SFTVNCTLINRSLYQMINVTQ 419 (420)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 419 (420)
.-.++++|-.+|--+|-+|.+-+| +|+|+.++--.-.-+.|+||-
T Consensus 67 ~~~~~~si~~~fnqG~G~~sl~dsG~Isytv~f~lP~~~tvrlirvts 114 (116)
T PF01481_consen 67 RSLCRQSIQTAFNQGGGTLSLSDSGRISYTVEFMLPTHHTVRLIRVTS 114 (116)
T ss_dssp HHHHHHHHHHHHHCT-SEEEEETTSSEEEEEEE---HHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCCcceeecCCCcEEEEEEEeCchhhhheeecccC
Confidence 345789999999999999995444 899999988888888888874
No 370
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=22.74 E-value=4.5e+02 Score=24.93 Aligned_cols=57 Identities=16% Similarity=0.018 Sum_probs=38.7
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|=.|.+.| |+..++.++ .+++|+.++.+++.++...+.++.. ..++.++..|..
T Consensus 11 k~vlVtGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 69 (278)
T PRK08277 11 KVAVITGGGGV-LGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA---GGEALAVKADVL 69 (278)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECCCC
Confidence 45666776544 677776654 4789999999988776655555433 245778888754
No 371
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=22.58 E-value=7.5e+02 Score=24.35 Aligned_cols=58 Identities=9% Similarity=-0.048 Sum_probs=35.3
Q ss_pred CCeEEEECCchhHHHHHHHHhh-cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLLGASL-LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~-~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+||-+|..||.--.-++--. +.-.|+|+|.++.+.+---.=+++- .+|--+..|.+
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DAr 132 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDAR 132 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-TT
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccCC
Confidence 3589999999997654444322 3558999999997755443333322 23555556643
No 372
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=22.55 E-value=1.5e+02 Score=27.83 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=34.5
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|=.|+.+ .|+..++.++ .+++|+++|.+.. +-+.+.+... ..++..+..|..
T Consensus 11 k~~lItG~~~-gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~---~~~~~~~~~Dl~ 67 (253)
T PRK08993 11 KVAVVTGCDT-GLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL---GRRFLSLTADLR 67 (253)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc---CCeEEEEECCCC
Confidence 4678888654 5888888765 4799999987643 2222333322 245777777753
No 373
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.54 E-value=4.8e+02 Score=23.81 Aligned_cols=56 Identities=16% Similarity=-0.033 Sum_probs=38.9
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|++. .|+..++..+ .+++|++++.+++.++.+.+.+... .++.++..|..
T Consensus 6 ~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~ 63 (238)
T PRK05786 6 KKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY----GNIHYVVGDVS 63 (238)
T ss_pred cEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----CCeEEEECCCC
Confidence 4788888864 4777777654 4789999999998776654444332 24777777754
No 374
>PRK08703 short chain dehydrogenase; Provisional
Probab=22.38 E-value=3.4e+02 Score=25.04 Aligned_cols=57 Identities=9% Similarity=-0.063 Sum_probs=37.7
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDN 176 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~ 176 (420)
.++|=.|++ |.|+..++..+ .+++|++++.+++.++.....+...+ ...+.++..|.
T Consensus 7 k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~ 65 (239)
T PRK08703 7 KTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG--HPEPFAIRFDL 65 (239)
T ss_pred CEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC--CCCcceEEeee
Confidence 478888854 55777777654 47899999999988776666554432 12345555553
No 375
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=22.20 E-value=4.4e+02 Score=26.04 Aligned_cols=128 Identities=15% Similarity=0.235 Sum_probs=64.6
Q ss_pred EEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCCCCCCcccccccCCccccccccc
Q 014664 120 FDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNSESTPSIQESLTGKSVQDESNMD 199 (420)
Q Consensus 120 LDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~~~~p~~~~~~~~~~~~~~~~~~ 199 (420)
+..=.||-.|+..+. .+.-++++.|+-+...+.-++|.... .+|.+.+.|...
T Consensus 62 l~~YPGSP~ia~~ll--R~qDrl~l~ELHp~d~~~L~~~~~~~----~~v~v~~~DG~~--------------------- 114 (245)
T PF04378_consen 62 LRFYPGSPAIAARLL--REQDRLVLFELHPQDFEALKKNFRRD----RRVRVHHRDGYE--------------------- 114 (245)
T ss_dssp --EEE-HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--TT----S-EEEE-S-HHH---------------------
T ss_pred cCcCCCCHHHHHHhC--CccceEEEEecCchHHHHHHHHhccC----CccEEEeCchhh---------------------
Confidence 555678876655443 24568999999999999888887643 479998887321
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCcEEEEEECCCcccCcccccCCCCcccCCCCCcccccCch
Q 014664 200 MSGHMDEEAEPSSSSSFNLPAGAQSSYHGPPVLVGVVRDGEQFDFCICNPPFFESMEEAGLNPKTSCGGTPEEMVCSGGE 279 (420)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~i~~~~~~FD~imcNPPF~~s~eea~~eP~~a~~G~~~Em~~~GGe 279 (420)
-+...+.+.++=-+|+.-|||-... |
T Consensus 115 -------------------------------~l~allPP~~rRglVLIDPpYE~~~-----------------------d 140 (245)
T PF04378_consen 115 -------------------------------GLKALLPPPERRGLVLIDPPYEQKD-----------------------D 140 (245)
T ss_dssp -------------------------------HHHHH-S-TTS-EEEEE-----STT-----------------------H
T ss_pred -------------------------------hhhhhCCCCCCCeEEEECCCCCCch-----------------------H
Confidence 1222233456677899999994332 2
Q ss_pred HHHHHHHHHHHHH-hhcC--CeEEEEEeCCcCcHHHHHHHHHHcCCceEEEEEe
Q 014664 280 RAFITRIIEDSVA-LKQT--FRWYTSMVGRKSNLKFLISKLRKVGVTIVKTTEF 330 (420)
Q Consensus 280 l~Fv~riI~eS~~-l~~~--~~w~tsmvgk~~~l~~l~~~L~~~g~~~v~~~e~ 330 (420)
..-+...+.++.+ +... .-||-.+ . ....+.+.+.|++.++..+-..|.
T Consensus 141 y~~v~~~l~~a~kR~~~G~~~iWYPi~-~-~~~~~~~~~~l~~~~~~~~l~~El 192 (245)
T PF04378_consen 141 YQRVVDALAKALKRWPTGVYAIWYPIK-D-RERVDRFLRALKALGIKKVLRAEL 192 (245)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEEEEES-S-HHHHHHHHHHHHHH-SSE-EEEEE
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEeecc-c-HHHHHHHHHHHHhcCCCCeEEEEE
Confidence 2223333443333 2221 2477543 3 456778888898888877666664
No 376
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.03 E-value=1.5e+02 Score=28.94 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=26.1
Q ss_pred EEEECCchhHHHHHHHHh--hcCCeeEEecCcHHHHHHHHHHHH
Q 014664 119 GFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDVALEWAEKNVK 160 (420)
Q Consensus 119 vLDIGTGsG~I~~~La~~--~~~~~vvavDIs~~AL~~A~~N~~ 160 (420)
|.=||+|. ++..++.. ..+.+|+++|++++.++.++..++
T Consensus 6 I~VIG~G~--mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~ 47 (282)
T PRK05808 6 IGVIGAGT--MGNGIAQVCAVAGYDVVMVDISDAAVDRGLATIT 47 (282)
T ss_pred EEEEccCH--HHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHH
Confidence 44466653 44333332 346799999999999987765543
No 377
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=21.82 E-value=2e+02 Score=26.66 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=35.0
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.++| |+..++.++ .+++|++++.++. +-+.+.++. +..++.++..|..
T Consensus 6 k~vlItGas~g-IG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~---~~~~~~~~~~D~~ 62 (248)
T TIGR01832 6 KVALVTGANTG-LGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEA---LGRRFLSLTADLS 62 (248)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHh---cCCceEEEECCCC
Confidence 46777787654 777777765 4789999998752 222333333 2346778877754
No 378
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=21.80 E-value=3.7e+02 Score=24.58 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=34.8
Q ss_pred eEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
++|=.|+ +|.|+..++..+ .++++++++.++. +.+++-.........++.++..|..
T Consensus 4 ~vlItG~-s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~ 62 (245)
T PRK12824 4 IALVTGA-KRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVT 62 (245)
T ss_pred EEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCC
Confidence 5677774 556787877665 3789999998854 2222222221112356888888754
No 379
>PRK06139 short chain dehydrogenase; Provisional
Probab=21.76 E-value=4.1e+02 Score=26.70 Aligned_cols=57 Identities=12% Similarity=0.062 Sum_probs=41.1
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
..+|=.|.++| |+..++..+ .+++|+.++.+++.++-..+.++..+ .++.++..|..
T Consensus 8 k~vlITGAs~G-IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g---~~~~~~~~Dv~ 66 (330)
T PRK06139 8 AVVVITGASSG-IGQATAEAFARRGARLVLAARDEEALQAVAEECRALG---AEVLVVPTDVT 66 (330)
T ss_pred CEEEEcCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCC
Confidence 46776776554 777777654 47899999999999988777776543 35777777753
No 380
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=21.65 E-value=1.2e+02 Score=29.39 Aligned_cols=32 Identities=13% Similarity=0.114 Sum_probs=24.0
Q ss_pred CCeEEEECCchhHHHHHHHHhh--cCCeeEEecCc
Q 014664 116 KVKGFDIGTGANCIYPLLGASL--LGWSFVGSDMT 148 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs 148 (420)
..+|||+|+-.|.-. ..+.+. |+-.+.|+||.
T Consensus 70 ~~~VlD~G~APGsWs-QVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWS-QVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCEEEEccCCCChHH-HHHHHhhCCCceEEEEeee
Confidence 458999999999754 444433 66789999995
No 381
>PLN02253 xanthoxin dehydrogenase
Probab=21.45 E-value=3.8e+02 Score=25.50 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=37.5
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.+ |.|+..++.++ .+++|+++|.+++..+.....+. ...++.++..|..
T Consensus 19 k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~ 76 (280)
T PLN02253 19 KVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG----GEPNVCFFHCDVT 76 (280)
T ss_pred CEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc----CCCceEEEEeecC
Confidence 467877754 55788877655 47999999998876654433332 1246788888864
No 382
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.36 E-value=2.5e+02 Score=27.59 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=28.0
Q ss_pred eEEEECCchhHHHHHHHH--hhcCCeeEEecCcHHHHHHHHHHHH
Q 014664 118 KGFDIGTGANCIYPLLGA--SLLGWSFVGSDMTDVALEWAEKNVK 160 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~--~~~~~~vvavDIs~~AL~~A~~N~~ 160 (420)
+|.=||+|.= +..++. ...+.+|+..|++++.++.++.+++
T Consensus 5 kIaViGaG~m--G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 5 NVTVAGAGVL--GSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred EEEEECCCHH--HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 4555677643 333332 2347899999999999999987764
No 383
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=21.20 E-value=6.4e+02 Score=24.62 Aligned_cols=59 Identities=14% Similarity=0.009 Sum_probs=44.8
Q ss_pred CCeEEEECCchh----HHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEcc
Q 014664 116 KVKGFDIGTGAN----CIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVD 175 (420)
Q Consensus 116 ~~~vLDIGTGsG----~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d 175 (420)
...+++++++.| -|++..|++..+-+++.+--+++.+...++.+...+ +.+.++|+.++
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~-~~~~vEfvvg~ 104 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG-LSDVVEFVVGE 104 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc-ccccceEEecC
Confidence 457888866543 355566677778899999999999888888887664 77778888765
No 384
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=21.02 E-value=2e+02 Score=31.98 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=41.6
Q ss_pred CCeEEEECCchhHHHHHH--HHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 116 KVKGFDIGTGANCIYPLL--GASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~L--a~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
...++=+|.|-|-+.-.. +++. ...+++|+|-+|.|+-.-+. .+.. ..+++|+++..|.+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~-~W~~~Vtii~~DMR 431 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFE-CWDNRVTIISSDMR 431 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchh-hhcCeeEEEecccc
Confidence 456788999999654322 2222 35789999999999876644 3333 36789999988854
No 385
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.71 E-value=1.4e+02 Score=26.65 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=23.3
Q ss_pred CCeEEEECCchhHHHHHHHHh--hcCCeeEEecCcHH
Q 014664 116 KVKGFDIGTGANCIYPLLGAS--LLGWSFVGSDMTDV 150 (420)
Q Consensus 116 ~~~vLDIGTGsG~I~~~La~~--~~~~~vvavDIs~~ 150 (420)
..+|+++|-|.= +-.+.+ ..+..++++||++.
T Consensus 14 ~gkVvEVGiG~~---~~VA~~L~e~g~dv~atDI~~~ 47 (129)
T COG1255 14 RGKVVEVGIGFF---LDVAKRLAERGFDVLATDINEK 47 (129)
T ss_pred CCcEEEEccchH---HHHHHHHHHcCCcEEEEecccc
Confidence 348999999973 334433 35689999999876
No 386
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=20.35 E-value=5.5e+02 Score=23.87 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=39.2
Q ss_pred CeEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 117 VKGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 117 ~~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.++|=.|.+ |.|+..++.++ .+++++.++.++..++.....++.. ..++.++..|..
T Consensus 10 k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~ 68 (254)
T PRK08085 10 KNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE---GIKAHAAPFNVT 68 (254)
T ss_pred CEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc---CCeEEEEecCCC
Confidence 467777755 45787777665 3689999999988877666555543 235677777754
No 387
>PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam); InterPro: IPR008593 This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences [].; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine
Probab=20.33 E-value=47 Score=31.22 Aligned_cols=10 Identities=40% Similarity=1.032 Sum_probs=8.3
Q ss_pred EEEECCCccc
Q 014664 244 FCICNPPFFE 253 (420)
Q Consensus 244 ~imcNPPF~~ 253 (420)
.|-|||||-.
T Consensus 66 ~vf~NPPYs~ 75 (181)
T PF05869_consen 66 RVFCNPPYSR 75 (181)
T ss_pred eEEecCchhh
Confidence 5899999964
No 388
>PRK08643 acetoin reductase; Validated
Probab=20.21 E-value=3.3e+02 Score=25.40 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=38.6
Q ss_pred eEEEECCchhHHHHHHHHhh--cCCeeEEecCcHHHHHHHHHHHHHCCCCCCcEEEEEccCC
Q 014664 118 KGFDIGTGANCIYPLLGASL--LGWSFVGSDMTDVALEWAEKNVKSNPHISELIEIRKVDNS 177 (420)
Q Consensus 118 ~vLDIGTGsG~I~~~La~~~--~~~~vvavDIs~~AL~~A~~N~~~N~~l~~rI~l~~~d~~ 177 (420)
.+|=.|.. |.|+..++..+ .+++|++++.+++.++.+...+... ..++.++..|..
T Consensus 4 ~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 61 (256)
T PRK08643 4 VALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD---GGKAIAVKADVS 61 (256)
T ss_pred EEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECCCC
Confidence 45655644 45777777654 4789999999988877766666543 235777777754
No 389
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=20.05 E-value=1.6e+02 Score=27.87 Aligned_cols=58 Identities=16% Similarity=0.263 Sum_probs=38.3
Q ss_pred hHHHHHHHHHccCCCCCCCCCCCCCeEEEECCchhHHHHHHHHhhcCCeeEEecCcHHHHHHHHHHHHH
Q 014664 93 NYIHWIEDLLSSNIIPTTSRNGDKVKGFDIGTGANCIYPLLGASLLGWSFVGSDMTDVALEWAEKNVKS 161 (420)
Q Consensus 93 nyi~wi~dll~~~~~~~~~~~~~~~~vLDIGTGsG~I~~~La~~~~~~~vvavDIs~~AL~~A~~N~~~ 161 (420)
-.+.||.+++... ...+++|.=+|+|+++..+.. +..+++.-|+++......+.-++.
T Consensus 7 ~l~~~I~~~ip~~---------~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 7 KLAKWIIELIPKN---------KHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GGHHHHHHHS-S----------S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---------CCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHHHHHhc
Confidence 3567888776531 346899999999988654432 677899999999998888744443
Done!