Your job contains 1 sequence.
>014666
MLLSPSTEEQFIKYLEGAKEQTEQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQINSSP
VIRPLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQ
QLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS
VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL
CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE
DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM
LGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAPGS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014666
(420 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2118509 - symbol:RH39 "RH39" species:3702 "Ara... 499 9.8e-48 1
DICTYBASE|DDB_G0269986 - symbol:DDB_G0269986 species:4468... 185 2.7e-18 2
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 144 2.3e-15 3
DICTYBASE|DDB_G0292992 - symbol:helA "putative RNA helica... 162 6.5e-15 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 146 1.6e-14 2
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 146 1.6e-14 2
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po... 209 2.9e-14 2
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu... 209 3.6e-14 2
TIGR_CMR|SPO_1443 - symbol:SPO_1443 "ATP-dependent RNA he... 152 5.4e-14 2
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he... 151 6.5e-14 2
UNIPROTKB|Q8EHT1 - symbol:SO_1136 "ATP-dependent RNA heli... 205 7.5e-14 1
TIGR_CMR|SO_1136 - symbol:SO_1136 "ATP-dependent RNA heli... 205 7.5e-14 1
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo... 205 8.6e-14 2
UNIPROTKB|Q9KU63 - symbol:VC_0660 "ATP-dependent RNA heli... 146 8.9e-14 2
TIGR_CMR|VC_0660 - symbol:VC_0660 "ATP-dependent RNA heli... 146 8.9e-14 2
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"... 204 1.1e-13 2
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 204 1.1e-13 2
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R... 204 1.1e-13 2
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R... 204 1.2e-13 2
FB|FBgn0015331 - symbol:abs "abstrakt" species:7227 "Dros... 199 1.3e-13 2
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 204 1.3e-13 2
TIGR_CMR|CPS_1590 - symbol:CPS_1590 "ATP-dependent RNA he... 203 1.3e-13 1
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 128 1.5e-13 3
FB|FBgn0052344 - symbol:CG32344 species:7227 "Drosophila ... 144 1.6e-13 2
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 206 1.8e-13 1
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 199 3.1e-13 2
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 135 1.5e-12 2
ZFIN|ZDB-GENE-030131-3973 - symbol:ddx31 "DEAD (Asp-Glu-A... 158 1.6e-12 2
UNIPROTKB|F8VRX4 - symbol:DDX54 "ATP-dependent RNA helica... 120 1.6e-12 2
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 142 1.9e-12 2
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 142 1.9e-12 2
UNIPROTKB|B2C6E9 - symbol:B2C6E9 "VASA" species:9337 "Tri... 196 1.9e-12 1
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 130 2.3e-12 2
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 130 2.3e-12 2
UNIPROTKB|A2VD92 - symbol:ddx1 "ATP-dependent RNA helicas... 125 2.4e-12 2
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 139 3.7e-12 2
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 139 3.7e-12 2
ZFIN|ZDB-GENE-021220-2 - symbol:ddx54 "DEAD (Asp-Glu-Ala-... 135 4.8e-12 2
UNIPROTKB|Q5XH91 - symbol:ddx1 "ATP-dependent RNA helicas... 125 4.9e-12 2
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 141 5.1e-12 2
UNIPROTKB|Q0IIK5 - symbol:DDX1 "ATP-dependent RNA helicas... 122 5.1e-12 2
UNIPROTKB|F6V659 - symbol:DDX1 "Uncharacterized protein" ... 122 5.1e-12 2
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 138 5.6e-12 2
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 192 5.8e-12 1
FB|FBgn0021995 - symbol:Rs1 "Rs1" species:7227 "Drosophil... 145 6.3e-12 2
WB|WBGene00006888 - symbol:vbh-1 species:6239 "Caenorhabd... 191 6.4e-12 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 121 7.2e-12 2
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 134 7.3e-12 3
UNIPROTKB|Q0DVX2 - symbol:LOC_Os03g01830 "DEAD-box ATP-de... 190 7.8e-12 1
DICTYBASE|DDB_G0287361 - symbol:ddx41 "DEAD box protein a... 190 8.5e-12 1
RGD|619903 - symbol:Ddx1 "DEAD (Asp-Glu-Ala-Asp) box heli... 120 1.1e-11 2
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 125 1.1e-11 3
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 135 1.3e-11 2
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 135 1.4e-11 2
UNIPROTKB|F8WDT8 - symbol:DDX56 "Probable ATP-dependent R... 164 1.5e-11 1
TAIR|locus:2152099 - symbol:AT5G65900 species:3702 "Arabi... 135 1.5e-11 3
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 130 1.5e-11 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 117 1.7e-11 2
UNIPROTKB|Q92499 - symbol:DDX1 "ATP-dependent RNA helicas... 120 1.7e-11 2
UNIPROTKB|Q5NVJ8 - symbol:DDX1 "ATP-dependent RNA helicas... 120 1.7e-11 2
UNIPROTKB|F1NTK9 - symbol:DDX54 "Uncharacterized protein"... 133 1.8e-11 2
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 128 2.1e-11 2
UNIPROTKB|Q4R7L5 - symbol:DDX1 "ATP-dependent RNA helicas... 120 2.2e-11 2
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli... 119 2.2e-11 2
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli... 119 2.2e-11 2
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 125 2.2e-11 2
UNIPROTKB|E2QRW3 - symbol:DDX1 "Uncharacterized protein" ... 122 2.5e-11 2
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 140 2.6e-11 2
WB|WBGene00001600 - symbol:glh-3 species:6239 "Caenorhabd... 186 2.6e-11 1
UNIPROTKB|O01836 - symbol:glh-3 "ATP-dependent RNA helica... 186 2.6e-11 1
WB|WBGene00022378 - symbol:Y94H6A.5 species:6239 "Caenorh... 124 3.1e-11 2
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 181 3.1e-11 1
TAIR|locus:2119176 - symbol:AT4G33370 species:3702 "Arabi... 183 3.5e-11 1
MGI|MGI:2144727 - symbol:Ddx1 "DEAD (Asp-Glu-Ala-Asp) box... 120 3.6e-11 2
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 120 4.2e-11 2
UNIPROTKB|F1NV49 - symbol:DDX1 "ATP-dependent RNA helicas... 120 4.5e-11 2
UNIPROTKB|Q90WU3 - symbol:DDX1 "ATP-dependent RNA helicas... 120 4.5e-11 2
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 131 5.0e-11 3
UNIPROTKB|I3LB32 - symbol:DDX28 "Uncharacterized protein"... 181 5.9e-11 1
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 179 7.1e-11 1
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 116 7.3e-11 2
UNIPROTKB|F8WAJ0 - symbol:DDX31 "Probable ATP-dependent R... 142 7.4e-11 2
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 122 7.5e-11 2
UNIPROTKB|E1BGI6 - symbol:DDX54 "Uncharacterized protein"... 128 7.6e-11 2
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 119 7.9e-11 2
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 119 7.9e-11 2
TAIR|locus:2010306 - symbol:EMB1586 "embryo defective 158... 180 8.0e-11 1
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 118 8.4e-11 2
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 136 8.8e-11 2
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 181 9.3e-11 1
UNIPROTKB|Q48PB7 - symbol:PSPPH_0449 "ATP-dependent RNA h... 180 9.9e-11 1
ASPGD|ASPL0000034540 - symbol:spb4 species:162425 "Emeric... 180 1.0e-10 1
UNIPROTKB|Q9H8H2 - symbol:DDX31 "Probable ATP-dependent R... 142 1.1e-10 2
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 142 1.1e-10 2
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 142 1.1e-10 2
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 142 1.1e-10 2
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 142 1.2e-10 2
ZFIN|ZDB-GENE-041001-215 - symbol:ddx1 "DEAD (Asp-Glu-Ala... 115 1.3e-10 2
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 119 1.4e-10 2
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 119 1.4e-10 2
WARNING: Descriptions of 555 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2118509 [details] [associations]
symbol:RH39 "RH39" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IMP;IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0070180 "LSU rRNA
binding" evidence=IDA] [GO:0080158 "chloroplast ribulose
bisphosphate carboxylase complex biogenesis" evidence=IMP]
[GO:1901259 "chloroplast rRNA processing" evidence=IMP] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0006399 "tRNA metabolic
process" evidence=RCA] [GO:0009658 "chloroplast organization"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0016887 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL161515 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OMA:RARRDHF EMBL:AL049482 GO:GO:0070180
GO:GO:0080158 EMBL:BT010574 EMBL:AK175347 EMBL:AK175353
EMBL:AK175435 EMBL:AK175766 EMBL:AK221801 IPI:IPI00543621
PIR:T04020 RefSeq:NP_849348.1 UniGene:At.43433
ProteinModelPortal:Q56X76 SMR:Q56X76 PaxDb:Q56X76 PRIDE:Q56X76
EnsemblPlants:AT4G09730.1 GeneID:826559 KEGG:ath:AT4G09730
KEGG:dosa:Os01t0184500-01 GeneFarm:1015 TAIR:At4g09730
HOGENOM:HOG000264923 InParanoid:Q56X76 PhylomeDB:Q56X76
ProtClustDB:CLSN2690824 Genevestigator:Q56X76 GermOnline:AT4G09730
GO:GO:1901259 Uniprot:Q56X76
Length = 621
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 113/251 (45%), Positives = 155/251 (61%)
Query: 125 IASEREKSSGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVL 183
+ E E S ++ +V +FQELGL E++ A++++ + VP+EIQC+GIPAV+ KSVVL
Sbjct: 95 VGVEEESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVL 154
Query: 184 XXXXXXXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL--PMKPMHPRAIVLC 241
+TLAYLLP+VQ ++R DEA L KP PR +VLC
Sbjct: 155 GSHTGSGKTLAYLLPIVQ------------------LMREDEANLGKKTKPRRPRTVVLC 196
Query: 242 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301
T E ++Q + +AK ISH AR S + +GG + ED N I M++ TP +LQHIE+
Sbjct: 197 PTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQHIEE 256
Query: 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AI 357
N+ DI Y+VLDEADT+FDRGFGPEI K L PL ALK+N QGFQT+LVTA A+
Sbjct: 257 GNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAV 316
Query: 358 AEMLGEQLSSL 368
+++ E+ +
Sbjct: 317 QKLVDEEFQGI 327
Score = 195 (73.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 53/148 (35%), Positives = 78/148 (52%)
Query: 63 RPLSXXXXXXXXXXQQRVPSKPE--KDSFILENFKLRKLNGSAKTXXXXXXXXXXXXXXX 120
RPL + + P+ K + +LE +LR L SAK
Sbjct: 42 RPLYSAAATTSSPTTETNVTDPDQLKHTILLERLRLRHLKESAKPPQQRPSSVVGVEEE- 100
Query: 121 XXXXIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS 180
+S R+KS ++V +FQELGL E++ A++++ + VP+EIQC+GIPAV+ KS
Sbjct: 101 -----SSIRKKSK----KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKS 151
Query: 181 VVLXXXXXXXRTLAYLLPLVQVYSQLDE 208
VVL +TLAYLLP+VQ+ + DE
Sbjct: 152 VVLGSHTGSGKTLAYLLPIVQLMRE-DE 178
>DICTYBASE|DDB_G0269986 [details] [associations]
symbol:DDB_G0269986 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269986
GO:GO:0005524 EMBL:AAFI02000005 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_646448.1
EnsemblProtists:DDB0190716 GeneID:8617407 KEGG:ddi:DDB_G0269986
InParanoid:Q55CN3 Uniprot:Q55CN3
Length = 796
Score = 185 (70.2 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 50/171 (29%), Positives = 86/171 (50%)
Query: 227 LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM--ENGGVSSKALEDVSNAP 284
LL P P+AI+L T E A Q +AK IS + + GG +K L+ N P
Sbjct: 365 LLKRAPRRPKAIILVPTRELAIQVMKVAKKISFEVKFSCTAISSGGGDLNKYLKTFKNLP 424
Query: 285 IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD--RGFGPEISKILNPLKDSALK 342
I +LI+TP +++ IE + + +R++V+DEAD++F +GF +I KI+ P K
Sbjct: 425 IDILISTPGSLIKLIEQKKIFFSKLRHLVIDEADSMFTIGKGFEQDIDKIVQPFKYRLQN 484
Query: 343 SNGQGFQTIL----VTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQ 389
G + + +A + E L +Q++ +E+ + + L ++Q
Sbjct: 485 KQEIGSENAINATICSATLTEQLMKQINQSFPSIEKLSTPTIHKSLNTLEQ 535
Score = 113 (44.8 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVL-NGKSVVLXXXXXXXRTLAYLLPL 199
+F LG+K ++++++K + +PS IQ + IP +L N K V+ +TL YLLP+
Sbjct: 226 AFSRLGIKKNLVESLKKHFNITIPSLIQQLAIPPILSNSKDVLFVSQTGTGKTLTYLLPI 285
Query: 200 VQVYSQLDEE 209
+Q + +E+
Sbjct: 286 IQNIKKSEEQ 295
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 144 (55.7 bits), Expect = 2.3e-15, Sum P(3) = 2.3e-15
Identities = 34/100 (34%), Positives = 61/100 (61%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE-DVSNAPIGMLIATPSE 294
R ++L T E A Q + + ++ + + S + GG+S+KA E ++ +P ++IATP
Sbjct: 263 RVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSP-DVVIATPGR 321
Query: 295 VLQHIEDRN-VSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
++ H+ + + + DD+ ++LDEAD L D GF EI+KI+
Sbjct: 322 LIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIV 361
Score = 129 (50.5 bits), Expect = 2.3e-15, Sum P(3) = 2.3e-15
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E + +F+EL L ++KAV+K+G P+ IQ IP LNGK ++ +T A+LL
Sbjct: 187 EELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLL 246
Query: 198 PLVQVYSQLDEEH 210
P+++ D E+
Sbjct: 247 PVLERLLFRDSEY 259
Score = 41 (19.5 bits), Expect = 2.3e-15, Sum P(3) = 2.3e-15
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 8 EEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKR--TGKSLVNLSKVLYSVKQI 56
+++ + E +E+ E E EK + K+++ ++ + K + KVL S +++
Sbjct: 130 DDEEVNEEEEEEEEEEDNENEKEINKKQQQQQQQSNKQTTDKIKVLQSNRKL 181
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 162 (62.1 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 40/127 (31%), Positives = 71/127 (55%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK-ALEDVSNAPIGMLIATPSE 294
RA++L T E A Q F + K S +L + + GG S + D++ P ++IATP
Sbjct: 302 RAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNP-DIIIATPGR 360
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 354
++ H+ + +S ++Y+V DEAD LF+ GF ++++IL+ L ++ QT+L +
Sbjct: 361 LMHHLLETGMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENR--------QTLLFS 412
Query: 355 AAIAEML 361
A + +L
Sbjct: 413 ATLPSLL 419
Score = 109 (43.4 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
+ E+++ + FQ + L ++KA+ K G VP+ IQ IP +L+G +V
Sbjct: 217 QEEETTSKKKKKTGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMART 276
Query: 188 XXXRTLAYLLPLVQ 201
+T A+++P++Q
Sbjct: 277 GSGKTGAFVIPMIQ 290
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 146 (56.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 48/162 (29%), Positives = 82/162 (50%)
Query: 231 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIA 290
KP+ RA++L T E A Q F + L +++ +GGVS K + + +L+A
Sbjct: 84 KPVI-RALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVA 142
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 350
TP +L + ++ + + VLDEAD + D GF P+I +IL L +S + N T
Sbjct: 143 TPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPES--RQNLLFSAT 200
Query: 351 ILVTAAIAEMLGEQLSS--LMECLERDNAG-KVTAMLLEMDQ 389
+ I E+ + L S L+E R+ A ++T ++ +D+
Sbjct: 201 F--SKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDR 240
Score = 111 (44.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF+ LGL AE+++A+ + G P+ +Q IP +L + V++ +T + LPL+Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 146 (56.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 48/162 (29%), Positives = 82/162 (50%)
Query: 231 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIA 290
KP+ RA++L T E A Q F + L +++ +GGVS K + + +L+A
Sbjct: 84 KPVI-RALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVDILVA 142
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 350
TP +L + ++ + + VLDEAD + D GF P+I +IL L +S + N T
Sbjct: 143 TPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPES--RQNLLFSAT 200
Query: 351 ILVTAAIAEMLGEQLSS--LMECLERDNAG-KVTAMLLEMDQ 389
+ I E+ + L S L+E R+ A ++T ++ +D+
Sbjct: 201 F--SKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDR 240
Score = 111 (44.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF+ LGL AE+++A+ + G P+ +Q IP +L + V++ +T + LPL+Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 209 (78.6 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 74/285 (25%), Positives = 135/285 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ L A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 180 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L +R+ P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS------KREG---------PYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALVKPV 394
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + E + K+V ++ L + P
Sbjct: 395 TINVGRAGAASLDVIQ-EVEYVKE-----EAKMVYLLECLQKTPP 433
Score = 44 (20.5 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 132
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 209 (78.6 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 74/285 (25%), Positives = 135/285 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ L A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 179 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L +R+ P +++C + E A Q + ++
Sbjct: 239 IMFC--LEQEKRLPFS------KREG---------PYGLIICPSRELARQTHGILEYYCR 281
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GGVS K + + +++ATP ++ ++ + VS D RY+
Sbjct: 282 LLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLA 341
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 342 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALVKPV 393
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + E + K+V ++ L + P
Sbjct: 394 TINVGRAGAASLDVIQ-EVEYVKE-----EAKMVYLLECLQKTPP 432
Score = 43 (20.2 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 12 IKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
+ L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 84 VSLLDQHQRLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 131
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 152 (58.6 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 35/101 (34%), Positives = 57/101 (56%)
Query: 235 PRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293
PR++VLC T E A Q + + H +L ++ GGVS K + + + + +LIATP
Sbjct: 74 PRSLVLCPTRELAAQVAENFDTYTKHL-KLTKALLIGGVSFKEQDALIDRGVDVLIATPG 132
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
+L H E + ++ +V+DEAD + D GF P+I +I +
Sbjct: 133 RLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFS 173
Score = 101 (40.6 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
++ F EL L +++KA+E+ G P+ IQ IP L G+ V+ +T ++ LP+
Sbjct: 1 MTKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQ 205
+ + ++
Sbjct: 61 ITLLAR 66
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 151 (58.2 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 32/103 (31%), Positives = 58/103 (56%)
Query: 231 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIA 290
KP PR ++L T E A Q ++ ++ ++ + + GGV+ + D+ + +L+A
Sbjct: 82 KPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTSTTDILVA 141
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
TP +L++IE+ +I +VLDEAD + D GF I++I+
Sbjct: 142 TPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIV 184
Score = 100 (40.3 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
+E+ F++ L +E++ ++ K+G P+ IQ + IP + GK V+ +T A+L
Sbjct: 9 SELSLMFEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFL 68
Query: 197 LPLVQ 201
LP+ Q
Sbjct: 69 LPIAQ 73
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 205 (77.2 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 71/233 (30%), Positives = 119/233 (51%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F ELGL A + KA+ L P+ +Q + IPA+L G+ ++ +T A+ LPL+Q
Sbjct: 18 TFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQ 76
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESA---DQGFH-MAKFI 257
+ Q Q+ T +++ KP+ A+VL T E A + H +A +
Sbjct: 77 ILWQ-------QIAVQTTA----KSVPAAKPL---ALVLVPTRELALQVSEALHALASQL 122
Query: 258 SHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
S A L+ + GGV+ + L D+S P +++ATP +L ++S D I+++VLDE
Sbjct: 123 STSAPLNIQLLCGGVALEQQLADLSAKP-QLVVATPGRLLDLCTQSHISLDAIKHLVLDE 181
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369
AD L + GF P++ K++ A+ + QT+L +A + E L L+
Sbjct: 182 ADRLLEMGFWPDMQKLM------AMMPKRK--QTLLFSATLPEALDSLAGKLL 226
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 205 (77.2 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 71/233 (30%), Positives = 119/233 (51%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F ELGL A + KA+ L P+ +Q + IPA+L G+ ++ +T A+ LPL+Q
Sbjct: 18 TFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQ 76
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESA---DQGFH-MAKFI 257
+ Q Q+ T +++ KP+ A+VL T E A + H +A +
Sbjct: 77 ILWQ-------QIAVQTTA----KSVPAAKPL---ALVLVPTRELALQVSEALHALASQL 122
Query: 258 SHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
S A L+ + GGV+ + L D+S P +++ATP +L ++S D I+++VLDE
Sbjct: 123 STSAPLNIQLLCGGVALEQQLADLSAKP-QLVVATPGRLLDLCTQSHISLDAIKHLVLDE 181
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369
AD L + GF P++ K++ A+ + QT+L +A + E L L+
Sbjct: 182 ADRLLEMGFWPDMQKLM------AMMPKRK--QTLLFSATLPEALDSLAGKLL 226
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 205 (77.2 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 73/285 (25%), Positives = 134/285 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L +R+ P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS------KREG---------PYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALVKPV 394
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + E + K+V ++ L + P
Sbjct: 395 TINVGRAGAASLDVIQ-EVEYVKE-----EAKMVYLLECLQKTPP 433
Score = 44 (20.5 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 132
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 146 (56.5 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 32/105 (30%), Positives = 55/105 (52%)
Query: 229 PMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P + P R ++L T E A Q A+ ++ RL+ GGV + D+ +
Sbjct: 69 PRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDI 128
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 129 VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
Score = 104 (41.7 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 18/63 (28%), Positives = 38/63 (60%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ +T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQ 201
+Q
Sbjct: 61 ALQ 63
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 146 (56.5 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 32/105 (30%), Positives = 55/105 (52%)
Query: 229 PMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P + P R ++L T E A Q A+ ++ RL+ GGV + D+ +
Sbjct: 69 PRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDI 128
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
++ATP +L++I+ C I +++LDEAD + D GFGP + ++
Sbjct: 129 VVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
Score = 104 (41.7 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 18/63 (28%), Positives = 38/63 (60%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ +T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQ 201
+Q
Sbjct: 61 ALQ 63
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 204 (76.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 73/285 (25%), Positives = 134/285 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L +R+ P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS------KREG---------PYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALVKPV 394
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + E + K+V ++ L + P
Sbjct: 395 TINVGRAGAASLDVIQ-EVEYVKE-----EAKMVYLLECLQKTPP 433
Score = 44 (20.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 132
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 204 (76.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 73/285 (25%), Positives = 134/285 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L +R+ P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS------KREG---------PYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALVKPV 394
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + E + K+V ++ L + P
Sbjct: 395 TINVGRAGAASLDVIQ-EVEYVKE-----EAKMVYLLECLQKTPP 433
Score = 44 (20.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 132
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 204 (76.9 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 73/285 (25%), Positives = 134/285 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L +R+ P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS------KREG---------PYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALVKPV 394
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + E + K+V ++ L + P
Sbjct: 395 TINVGRAGAASLDVIQ-EVEYVKE-----EAKMVYLLECLQKTPP 433
Score = 44 (20.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 78 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 132
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 204 (76.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 73/285 (25%), Positives = 134/285 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 198 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 257
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L +R+ P +++C + E A Q + ++
Sbjct: 258 IMFC--LEQEKRLPFS------KREG---------PYGLIICPSRELARQTHGILEYYCR 300
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 301 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 360
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 361 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALVKPV 412
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + E + K+V ++ L + P
Sbjct: 413 TINVGRAGAASLDVIQ-EVEYVKE-----EAKMVYLLECLQKTPP 451
Score = 44 (20.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 96 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 150
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 199 (75.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 71/286 (24%), Positives = 134/286 (46%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ ++ + G+ P+ IQ G+P VL G+ ++ +TL ++LP+
Sbjct: 176 IRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPV 235
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAK 255
+ L++E+ L R+E P +++C + E A Q H +K
Sbjct: 236 IMF--ALEQEYSLPF-------ERNEG--------PYGLIICPSRELAKQTHEIIQHYSK 278
Query: 256 FISHCA--RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ C + S + GG+ S+AL+ +S + +++ATP ++ ++ + ++ D RY+
Sbjct: 279 HLQACGMPEIRSCLAMGGLPVSEALDVISRG-VHIVVATPGRLMDMLDKKILTLDMCRYL 337
Query: 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372
+DEAD + D GF ++ I + K GQ QT+L +A + + + S +
Sbjct: 338 CMDEADRMIDMGFEEDVRTIFSFFK-------GQR-QTLLFSATMPKKIQNFARSALVKP 389
Query: 373 ERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A + + Q + Q+A KVV +D L +AP
Sbjct: 390 VTINVGRAGAASMNVTQQVEY---VKQEA---KVVYLLDCLQKTAP 429
Score = 49 (22.3 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 23 EQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQ 55
+ TE +K+ + KK+ K L K++ S+ Q
Sbjct: 86 QHTELKKIAEAKKLSAVEKQLREEEKIMESIAQ 118
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 204 (76.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 73/285 (25%), Positives = 134/285 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 207 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 266
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L +R+ P +++C + E A Q + ++
Sbjct: 267 IMFC--LEQEKRLPFS------KREG---------PYGLIICPSRELARQTHGILEYYCR 309
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 310 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 369
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 370 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALVKPV 421
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + E + K+V ++ L + P
Sbjct: 422 TINVGRAGAASLDVIQ-EVEYVKE-----EAKMVYLLECLQKTPP 460
Score = 44 (20.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + + L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 105 PLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 159
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 203 (76.5 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 63/258 (24%), Positives = 116/258 (44%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
S +GL A+++KAV+ G + IQ IP + G ++ +T A+ LP++
Sbjct: 2 SVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILD 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
++ + H T RA++L T E A+Q K S
Sbjct: 62 AIAKAN---HAAKSSTTSTDENSAEEKSASGQAIRALILTPTRELANQVADNIKQFSQYL 118
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ S + GG + + + +L+ATP +L+H+ RNV ++++VLDEAD +
Sbjct: 119 PIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRML 178
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVT 381
D GF +I K+L +K QT++ +A ++ + + L++ + + K
Sbjct: 179 DMGFLTDIEKLLLAVKHK--------HQTLMFSATFSDRVKSLANQLLKSPKTISVSKEN 230
Query: 382 AMLLEMDQAEVFDLTESQ 399
++ QA V+ +TE +
Sbjct: 231 TTSGKIKQA-VYWVTEER 247
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 128 (50.1 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
+SE N E +F+ELG+ E+ +A EK+G P+ IQ IP VLN + V+
Sbjct: 31 SSENNNGDSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLA 90
Query: 186 XXXXXRTLAYLLPLVQ 201
+T A+ LP++Q
Sbjct: 91 QTGSGKTAAFALPVIQ 106
Score = 124 (48.7 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 34/100 (34%), Positives = 56/100 (56%)
Query: 237 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS--SKALEDVSNAPIGMLIATPSE 294
A+VL T E A Q + I + S + GG+ ++A+ +S P +L+ TP
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVA-LSKKP-HVLVCTPGR 174
Query: 295 VLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
++ H+E+ + S +++Y+++DEAD L D FGP I KIL
Sbjct: 175 LMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKIL 214
Score = 37 (18.1 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 386 EMDQAEVFDLTESQDALKKKVVEAMDSLH 414
E+D+ VF L+E +++ + M +H
Sbjct: 412 EIDKEGVFLLSERVGEAQREAIIQMKEIH 440
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 144 (55.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 45/151 (29%), Positives = 75/151 (49%)
Query: 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 273
L+ + + L+R E P K RA++L T E A Q + K + L S + GG S
Sbjct: 94 LIPLFEKLQRRE---PTKGA--RALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDS 148
Query: 274 SKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
+ + P +++ATP L + ++ + I YVV DEAD LF+ GFG ++++
Sbjct: 149 MDSQFSAIHTCP-DVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNET 207
Query: 333 LNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
L+ L S QT++ +A + ++L E
Sbjct: 208 LHRLPSSR--------QTVMFSATLPKLLVE 230
Score = 112 (44.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
S S FQ +GL E+IK + K G VP+ IQ IP +L G+ VV +T
Sbjct: 31 SKSKKNKSGGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKT 90
Query: 193 LAYLLPLVQ 201
+L+PL +
Sbjct: 91 ACFLIPLFE 99
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 206 (77.6 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 63/242 (26%), Positives = 123/242 (50%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLF-VPSEIQCVGIPAVLNGKSVVLXXXXX 188
+++G N ++SF ++ L E+I+ + + P+ +Q IP ++NG+ ++
Sbjct: 284 EATGQNVPPNITSFDDVQL-TEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTG 342
Query: 189 XXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+L+P++ +Q+ E H+ T+ R + +P +VL T E A
Sbjct: 343 SGKTAAFLVPIL---NQMYELGHVPPPQSTRQYSR-------RKQYPLGLVLAPTRELAT 392
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q F AK ++ +R+ ++ GG + S+ + ++ +++ATP + I V +
Sbjct: 393 QIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRG-CHLIVATPGRLEDMITRGKVGLE 451
Query: 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSS 367
+IR++VLDEAD + D GF P+I +I+ L + GQ QT++ +A + + E S
Sbjct: 452 NIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQR-QTLMFSATFPKQIQELASD 507
Query: 368 LM 369
+
Sbjct: 508 FL 509
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 199 (75.1 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 72/285 (25%), Positives = 134/285 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ +TL + LP+
Sbjct: 176 IKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 235
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L +R+ P +++C + E A Q + ++
Sbjct: 236 IMFC--LEQEKRLPFS------KREG---------PYGLIICPSRELARQTHGIIEYYCR 278
Query: 260 CARLDS------SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DS ++ GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 279 LLQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 338
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 339 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALVKPI 390
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + E + K+V ++ L + P
Sbjct: 391 TINVGRAGAASLDVVQ-EVEYVKE-----EAKMVYLLECLQKTPP 429
Score = 45 (20.9 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK-LRKRKKMKRTGKSLVNLS--KVLYSVKQI 56
P + I L+ + E+ EA K K K++K K L +++ + L SVK++
Sbjct: 74 PLGPQSNISLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMSVKEM 128
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 135 (52.6 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
PR ++L T E A Q A+ ++ LD + GGV+ +V + +++AT
Sbjct: 77 PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGR 136
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
+LQ+I++ N C + ++LDEAD + D GF +I I
Sbjct: 137 LLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHI 174
Score = 105 (42.0 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V++F EL L +++A++ G P+ IQ IP L+G+ V+ +T AYLLP
Sbjct: 3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQ 201
+Q
Sbjct: 63 LQ 64
>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
Length = 739
Score = 158 (60.7 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 55/187 (29%), Positives = 92/187 (49%)
Query: 235 PRAIVLCTTEESADQGFHM-AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293
P A+V+ T E A Q F M K + + + GG KA + I +LI+TP
Sbjct: 230 PLAVVIVPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRKGINVLISTPG 289
Query: 294 EVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 352
++ HI++ +++ +R+++LDEAD + D GF +++ ILN AL + G Q +L
Sbjct: 290 RLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILN-----ALNAAGPDRQNVL 344
Query: 353 VTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEM-DQAEVFDLTESQ---DALKKKVVE 408
++A I E L S M+ + + + +E QA L++S + L++ VV
Sbjct: 345 LSATITEGLSRLASISMKDPVSVHVSEGSEETVEACPQAAPQALSDSYAVPERLQQHVVV 404
Query: 409 AMDSLHL 415
LHL
Sbjct: 405 VPSKLHL 411
Score = 86 (35.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPS--EIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
++F+EL L ++ + K+ L V S +Q IP +++GK V+ +TLAY +P
Sbjct: 154 NTFEELNLHPHLVATLHKV-LNVSSMTSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIP 212
Query: 199 LVQ 201
+VQ
Sbjct: 213 MVQ 215
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 120 (47.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 35/128 (27%), Positives = 61/128 (47%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q K + L +++ GG + + ++IATP +
Sbjct: 85 RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRL 144
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
+ + ++ + YVV DEAD LF+ GF ++ +I+ L G QT+L +A
Sbjct: 145 VHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPG--------GHQTVLFSA 196
Query: 356 AIAEMLGE 363
+ ++L E
Sbjct: 197 TLPKLLVE 204
Score = 106 (42.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
FQ +GL + K + K G VP+ IQ IP +L+GK VV +T +LLP+ +
Sbjct: 15 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE 73
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 142 (55.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 45/156 (28%), Positives = 73/156 (46%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDS--SMENGGVSSKALEDVSNAPIGMLIATPS 293
RA+VL T E A Q F+ + D + GGVS +A + V NA I +LIATP
Sbjct: 77 RALVLVPTRELALQV--QQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPG 134
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 353
+L H+ ++ + + +V DEAD + D GF EI +L + QT+L
Sbjct: 135 RLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQR--------QTLLF 186
Query: 354 TAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQ 389
+A + + + +L+ +R K +++Q
Sbjct: 187 SATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQ 222
Score = 95 (38.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF L L +++ + ++G P+ IQ IPA+L + V+ +T A+ LP++Q
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 202 VYSQLDEEHH 211
+ ++ H
Sbjct: 62 LLMADNQSDH 71
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 142 (55.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 45/156 (28%), Positives = 73/156 (46%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDS--SMENGGVSSKALEDVSNAPIGMLIATPS 293
RA+VL T E A Q F+ + D + GGVS +A + V NA I +LIATP
Sbjct: 77 RALVLVPTRELALQV--QQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGIDVLIATPG 134
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 353
+L H+ ++ + + +V DEAD + D GF EI +L + QT+L
Sbjct: 135 RLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQR--------QTLLF 186
Query: 354 TAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQ 389
+A + + + +L+ +R K +++Q
Sbjct: 187 SATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQ 222
Score = 95 (38.5 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF L L +++ + ++G P+ IQ IPA+L + V+ +T A+ LP++Q
Sbjct: 2 SFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ 61
Query: 202 VYSQLDEEHH 211
+ ++ H
Sbjct: 62 LLMADNQSDH 71
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 196 (74.1 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 71/284 (25%), Positives = 123/284 (43%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q GIP +L G+ ++ +
Sbjct: 257 SGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTGSGK 316
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ G+T +D+ P I++ T E +Q F
Sbjct: 317 TAAFLLPILA---------HMMRDGVTASRFKDQ-------QEPECIIVAPTRELINQIF 360
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + GG ++ + +L ATP ++ I + IR
Sbjct: 361 LEARKFSFGTCVRPVVIYGGTQLGHSIRQIMQG-CNILCATPGRLMDIIGKEKIGLGQIR 419
Query: 311 YVVLDEADTLFDRGFGPEISKILN-PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369
Y+VLDEAD + D GFGPE+ K+++ P S + F + GE L +L
Sbjct: 420 YLVLDEADRMLDMGFGPEMKKLISFPGMPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLT 479
Query: 370 ECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
CL G+V ++ Q L Q + ++K+VE + ++
Sbjct: 480 ICLVA--VGQVGGACSDVQQTV---LQVGQYSKREKLVEILRNI 518
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 130 (50.8 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 32/101 (31%), Positives = 49/101 (48%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA+VL T E A Q + + L GG S K + + +LIATP +
Sbjct: 83 RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRL 142
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
L H +++ + +VLDEAD + D GF P++ ++L L
Sbjct: 143 LDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRL 183
Score = 108 (43.1 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ +T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQ 201
LPL+Q
Sbjct: 62 LPLIQ 66
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 130 (50.8 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 32/101 (31%), Positives = 49/101 (48%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA+VL T E A Q + + L GG S K + + +LIATP +
Sbjct: 83 RALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRL 142
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
L H +++ + +VLDEAD + D GF P++ ++L L
Sbjct: 143 LDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRL 183
Score = 108 (43.1 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ +T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQ 201
LPL+Q
Sbjct: 62 LPLIQ 66
>UNIPROTKB|A2VD92 [details] [associations]
symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8355
"Xenopus laevis" [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0033677
"DNA/RNA helicase activity" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177
EMBL:BC129617 RefSeq:NP_001091352.1 UniGene:Xl.75260
ProteinModelPortal:A2VD92 IntAct:A2VD92 PRIDE:A2VD92
GeneID:100037192 KEGG:xla:100037192 Xenbase:XB-GENE-969102
Uniprot:A2VD92
Length = 740
Score = 125 (49.1 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 35/138 (25%), Positives = 70/138 (50%)
Query: 232 PMHPRAIVLCTTEESADQGFHMAK-FISHC--ARLDSSMENGGVSSKALEDVSNAPIGML 288
P P+A+++ + E A+Q + K F + +L + GGV++K + + ++
Sbjct: 284 PNAPKALIIEPSRELAEQTLNNVKQFKKYVDNPKLRELLIIGGVAAKEQLTILENGVDIV 343
Query: 289 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 348
+ TP + I +S +R++VLDEAD L +G+ I++I + + S+G+
Sbjct: 344 VGTPGRIDDLISTGKLSLSQVRFLVLDEADGLLSQGYSDFINRIYGQIPQ--ITSDGKRL 401
Query: 349 QTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 402 QVIVCSATLHSFDVKKLS 419
Score = 120 (47.3 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 139 (54.0 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 225 EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKALEDVSNA 283
E LL + I+L T E A Q + K +SH L+ + GG++ + E+
Sbjct: 190 ERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKT 249
Query: 284 PIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
++IATP ++ HI + + S DI+ +V+DEAD + + GF E+++IL+
Sbjct: 250 RPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILS 301
Score = 101 (40.6 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLX 184
IA E+SS +SFQ L L ++K + ++ P+ IQ IP L GK +V
Sbjct: 116 IADFYEESSPQQTH--TSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAG 173
Query: 185 XXXXXXRTLAYLLPLVQ 201
+T AY++P+++
Sbjct: 174 AQTGSGKTGAYMIPIIE 190
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 139 (54.0 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 35/112 (31%), Positives = 60/112 (53%)
Query: 225 EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKALEDVSNA 283
E LL + I+L T E A Q + K +SH L+ + GG++ + E+
Sbjct: 190 ERLLYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKT 249
Query: 284 PIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
++IATP ++ HI + + S DI+ +V+DEAD + + GF E+++IL+
Sbjct: 250 RPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILS 301
Score = 101 (40.6 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLX 184
IA E+SS +SFQ L L ++K + ++ P+ IQ IP L GK +V
Sbjct: 116 IADFYEESSPQQTH--TSFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAG 173
Query: 185 XXXXXXRTLAYLLPLVQ 201
+T AY++P+++
Sbjct: 174 AQTGSGKTGAYMIPIIE 190
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 135 (52.6 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 37/135 (27%), Positives = 64/135 (47%)
Query: 229 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGML 288
P RA++L T E A Q K + L +++ GG S + ++
Sbjct: 143 PQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHENPDII 202
Query: 289 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 348
I TP ++ I++ N+ + YVV DEAD LF+ GF ++ +I+ L D+
Sbjct: 203 IGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDAR-------- 254
Query: 349 QTILVTAAIAEMLGE 363
QT+L +A + +++ E
Sbjct: 255 QTLLFSATLPKLIVE 269
Score = 108 (43.1 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
FQ +GL + K + K G VP+ IQ IP +L+GK VV +T A+L+PL +
Sbjct: 80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFE 138
>UNIPROTKB|Q5XH91 [details] [associations]
symbol:ddx1 "ATP-dependent RNA helicase DDX1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003712 "transcription cofactor activity"
evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006302 "double-strand
break repair" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0033677 "DNA/RNA helicase activity" evidence=ISS] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISS] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0004527 GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032508 GO:GO:0008143 GeneTree:ENSGT00660000095174
GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ
OrthoDB:EOG46HG95 HSSP:P10081 HOGENOM:HOG000251633 EMBL:CR855610
EMBL:BC084181 RefSeq:NP_001011133.1 UniGene:Str.3470
ProteinModelPortal:Q5XH91 STRING:Q5XH91 PRIDE:Q5XH91
Ensembl:ENSXETT00000038646 GeneID:496549 KEGG:xtr:496549
Xenbase:XB-GENE-969096 InParanoid:Q5XH91 Bgee:Q5XH91 Uniprot:Q5XH91
Length = 740
Score = 125 (49.1 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 24/71 (33%), Positives = 45/71 (63%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ AE+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMAEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
Score = 117 (46.2 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 34/138 (24%), Positives = 70/138 (50%)
Query: 232 PMHPRAIVLCTTEESADQGFHMAK-FISHC--ARLDSSMENGGVSSKALEDVSNAPIGML 288
P P+A+++ + E A+Q + K F + +L + GGV++K + + ++
Sbjct: 284 PNAPKALIIEPSRELAEQTLNNVKQFKKYVDSPKLRELLIIGGVAAKEQLTLLENGVDIV 343
Query: 289 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 348
+ TP + I ++ +R++VLDEAD L +G+ I++I + + S+G+
Sbjct: 344 VGTPGRIDDLISTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHGQIPQ--VTSDGKRL 401
Query: 349 QTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 402 QVIVCSATLHSFDVKKLS 419
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 141 (54.7 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 36/105 (34%), Positives = 59/105 (56%)
Query: 235 PRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATP 292
P +VL T E A Q +KF H +R+ ++ GGV S+ + D+S ++IATP
Sbjct: 187 PIVLVLAPTRELAVQIQTECSKF-GHSSRIRNTCVYGGVPKSQQIRDLSRGS-EIVIATP 244
Query: 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 245 GRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
Score = 96 (38.9 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP- 198
+++F E G ++ V+ G P+ IQC G P L+G+ +V +TL+Y LP
Sbjct: 112 ITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPG 171
Query: 199 LVQVYSQ 205
+V + +Q
Sbjct: 172 IVHINAQ 178
>UNIPROTKB|Q0IIK5 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=ISS] [GO:0033677
"DNA/RNA helicase activity" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0003712
"transcription cofactor activity" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0003725 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
GO:GO:0004518 GO:GO:0010494 GO:GO:0008026 GO:GO:0043330
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0071920 GeneTree:ENSGT00660000095174
GO:GO:0033677 EMBL:BC122599 IPI:IPI00716534 RefSeq:NP_001068936.1
UniGene:Bt.1784 ProteinModelPortal:Q0IIK5 STRING:Q0IIK5
PRIDE:Q0IIK5 Ensembl:ENSBTAT00000013075 GeneID:510816
KEGG:bta:510816 CTD:1653 HOVERGEN:HBG005462 InParanoid:Q0IIK5
KO:K13177 OMA:TLNNVKQ OrthoDB:EOG46HG95 NextBio:20869630
ArrayExpress:Q0IIK5 Uniprot:Q0IIK5
Length = 740
Score = 122 (48.0 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 34/139 (24%), Positives = 73/139 (52%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLDNGVDI 342
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I++I N + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQ--ITSDGKR 400
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 401 LQVIVCSATLHSFDVKKLS 419
Score = 120 (47.3 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
>UNIPROTKB|F6V659 [details] [associations]
symbol:DDX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 CTD:1653 KO:K13177
OMA:TLNNVKQ Ensembl:ENSCAFT00000005957 EMBL:AAEX03010740
EMBL:AAEX03010739 RefSeq:XP_848865.1 GeneID:475671 KEGG:cfa:475671
Uniprot:F6V659
Length = 740
Score = 122 (48.0 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 34/139 (24%), Positives = 73/139 (52%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLDNGVDI 342
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I++I N + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQ--ITSDGKR 400
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 401 LQVIVCSATLHSFDVKKLS 419
Score = 120 (47.3 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 138 (53.6 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 36/107 (33%), Positives = 58/107 (54%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALE--DVSNAPIGMLIA 290
P A+VL T E A Q + + H + + + GG SSK + D+ + ++IA
Sbjct: 311 PIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGG-SSKVPQARDLDRG-VEVIIA 368
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ +E+RN + Y+VLDEAD + D GF P+I KI+ ++
Sbjct: 369 TPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 415
Score = 105 (42.0 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP- 198
V SF+E L A +I+ +++ G P+ IQ G P L+G+ +V +TLAY+LP
Sbjct: 236 VVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPA 295
Query: 199 LVQVYSQ 205
+V + +Q
Sbjct: 296 IVHIGNQ 302
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 192 (72.6 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 69/285 (24%), Positives = 129/285 (45%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+++E G E+ +AV+++G P+ IQ IP L + V+ +T A+LLPL+
Sbjct: 302 NWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLL- 360
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
V+ + + +M R++ + + P AI++ T E A Q
Sbjct: 361 VW----------ITSLPKMERQEH-----RDLGPYAIIMAPTRELAQQIEEETNKFGKLL 405
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ + GG S + + ++IATP +L +E+R + + YV+LDEAD +
Sbjct: 406 GIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRML 465
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGF---QTILVTAAIAE------MLGEQLSSLMECL 372
D GF P++ K+L + D+ +K + F + ++ + E M +SS +E L
Sbjct: 466 DMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERL 525
Query: 373 ERDNAGKVTAMLL-----EMDQAEVFDLTESQDALKKKVVEAMDS 412
R + + + ++ E +D +KK+VE ++S
Sbjct: 526 ARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKKLVEVLES 570
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 145 (56.1 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 45/147 (30%), Positives = 76/147 (51%)
Query: 220 MLRRDEALLPMKPMHPRAI----VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 275
ML E LL +P++ +AI VL T E Q + + K + +D + GG+ K
Sbjct: 212 MLPTLERLL-YRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVK 270
Query: 276 ALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
A E V ++IATP ++ HI++ + + D I ++LDEAD + D F ++ +I+N
Sbjct: 271 AQEAVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIIN 330
Query: 335 PLKDSALKSNGQGFQTILVTAAIAEML 361
S K+ QT+L +A ++E +
Sbjct: 331 ----SCCKTR----QTMLFSATMSEQV 349
Score = 95 (38.5 bits), Expect = 6.3e-12, Sum P(2) = 6.3e-12
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E ++SF ++ L +++A+ +G P+ IQ IP L G+ + +T AY+L
Sbjct: 154 EQITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYML 213
Query: 198 PLVQ--VYSQLDEE 209
P ++ +Y L+ +
Sbjct: 214 PTLERLLYRPLNNK 227
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 191 (72.3 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 59/206 (28%), Positives = 97/206 (47%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
E S S + F E G +++ V + G P+ +Q IP +L + ++
Sbjct: 128 EVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTGS 187
Query: 190 XRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
+T A+LLP++Q H+ L G M++ + +P A+VL T E A Q
Sbjct: 188 GKTAAFLLPIIQ---------HI-LAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQ 237
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCD 307
A S+ + + +++ GG + + V+ G +LIATP ++ IE +
Sbjct: 238 IHKEATKFSYKSNIQTAILYGGRENYR-DQVNRLRAGTHILIATPGRLIDIIEQGFIGLA 296
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
RY+VLDEAD + D GF P+I KI+
Sbjct: 297 GCRYLVLDEADRMLDMGFEPQIRKIV 322
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 121 (47.7 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF LGL A + KAV + G PS IQ IPAVL GK V+ +T + LPL++
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 VYSQ 205
+ ++
Sbjct: 62 LLAK 65
Score = 116 (45.9 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 32/98 (32%), Positives = 48/98 (48%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA+VL T E A Q + L S++ GGV + + +L+ATP +
Sbjct: 75 RALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVDVLVATPGRL 134
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
L ++ V + + +VLDEAD + D GF +I KIL
Sbjct: 135 LDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKIL 172
Score = 41 (19.5 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 271 GVSSKALEDVSNAPIGMLIAT 291
G +KAL D + + +L+AT
Sbjct: 280 GARTKALADFKSGEVRVLVAT 300
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 134 (52.2 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 32/104 (30%), Positives = 55/104 (52%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q A +++ ++ GGV + D+ + ++IATP
Sbjct: 173 PIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKG-VEIVIATPG 231
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E N + + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 232 RLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIR 275
Score = 100 (40.3 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP- 198
V SF+++G +++ V+K G P+ IQ G P + G+ ++ +TL+YLLP
Sbjct: 98 VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPA 157
Query: 199 LVQVYSQ 205
+V V +Q
Sbjct: 158 IVHVNAQ 164
Score = 39 (18.8 bits), Expect = 7.3e-12, Sum P(3) = 7.3e-12
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 3 LSPSTEEQFIKYLEG-AKEQTEQTEAEKLRKRKKMKRTGKSL 43
L+P E+ F Y+E A TE E+ RK +++ GK +
Sbjct: 56 LTPF-EKNF--YVESPAVAAMTDTEVEEYRKLREITVEGKDI 94
>UNIPROTKB|Q0DVX2 [details] [associations]
symbol:LOC_Os03g01830 "DEAD-box ATP-dependent RNA helicase
50" species:39947 "Oryza sativa Japonica Group" [GO:0003724 "RNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006968 "cellular defense
response" evidence=IDA] [GO:0009817 "defense response to fungus,
incompatible interaction" evidence=IDA] [GO:0071369 "cellular
response to ethylene stimulus" evidence=IEP] [GO:0071395 "cellular
response to jasmonic acid stimulus" evidence=IEP] [GO:0071446
"cellular response to salicylic acid stimulus" evidence=IEP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 GO:GO:0071395 GO:GO:0006968 EMBL:DP000009
EMBL:AP008209 GO:GO:0009817 GO:GO:0003723 EMBL:AC113930
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000140
GO:GO:0071369 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 GO:GO:0071446 HOGENOM:HOG000078675
EMBL:AK065776 RefSeq:NP_001048702.1 UniGene:Os.43898
ProteinModelPortal:Q0DVX2 STRING:Q0DVX2
EnsemblPlants:LOC_Os03g01830.1 GeneID:4331339 KEGG:osa:4331339
Gramene:Q0DVX2 OMA:PSHIQAM ProtClustDB:CLSN2684806 Uniprot:Q0DVX2
Length = 641
Score = 190 (71.9 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 59/181 (32%), Positives = 88/181 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF+E+G E++ A+ G PS IQ + VL GKS ++ +TLAYL P+VQ
Sbjct: 241 SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQ 300
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
L +E ++ G L R P +PR +VL T E A Q + + IS
Sbjct: 301 ---NLRKE---EVEG----LHRSS------PRNPRVVVLTPTAELASQVLNNCRSISKSG 344
Query: 262 -RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
S + GG K + + + +LIATP L +++ V +++R VVLDE D L
Sbjct: 345 VPFRSMVATGGFRQKTQLESLDQELDVLIATPGRFLYLLQEGFVQLNNLRCVVLDEVDIL 404
Query: 321 F 321
+
Sbjct: 405 Y 405
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 190 (71.9 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 67/286 (23%), Positives = 132/286 (46%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F+E+ + +I + + G+ PS IQ G+P +L+G+ ++ +TL + LP+
Sbjct: 221 ITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPM 280
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
V +++ L+EE L ++ + E P ++LC + E A Q + + ++
Sbjct: 281 V-LFA-LEEECKLPII-------QGEG--------PFGLILCPSRELARQTYDLVNSFTN 323
Query: 260 CA-------RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+L + + GG+ + E + + M+IATP +L + + ++ +Y+
Sbjct: 324 ALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYL 383
Query: 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372
LDEAD L D GF +I +L+ + QT+L +A + + + E S +
Sbjct: 384 GLDEADRLIDLGFEDDIRSVLDNFTNQR--------QTLLFSATMPKKIQEFARSALVLP 435
Query: 373 ERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L + Q F E+ K+V ++ L + P
Sbjct: 436 VEVNVGRAGAANLNVTQEVEFVKPEA------KIVYLLECLQKTPP 475
>RGD|619903 [details] [associations]
symbol:Ddx1 "DEAD (Asp-Glu-Ala-Asp) box helicase 1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO;ISS] [GO:0003712
"transcription cofactor activity" evidence=ISO;ISS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISO] [GO:0004518
"nuclease activity" evidence=ISO;ISS] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISO;ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISO;ISS] [GO:0009615 "response to virus" evidence=IEA;ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO;ISS] [GO:0033677 "DNA/RNA
helicase activity" evidence=ISO;ISS] [GO:0043330 "response to
exogenous dsRNA" evidence=IEA;ISO] [GO:0071920 "cleavage body"
evidence=ISO;ISS] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISO;ISS] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:619903 GO:GO:0007275
GO:GO:0005524 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985
SUPFAM:SSF49899 GO:GO:0003725 GO:GO:0004527 GO:GO:0006302
GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GO:GO:0072669 GO:GO:0004518 GO:GO:0010494 GO:GO:0008026
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032508 GO:GO:0008143 GO:GO:0071920
GeneTree:ENSGT00660000095174 GO:GO:0033677 CTD:1653
HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ OrthoDB:EOG46HG95
HOGENOM:HOG000251633 EMBL:BC082049 IPI:IPI00555314
RefSeq:NP_445866.1 UniGene:Rn.65536 ProteinModelPortal:Q641Y8
IntAct:Q641Y8 STRING:Q641Y8 PRIDE:Q641Y8 Ensembl:ENSRNOT00000009100
GeneID:84474 KEGG:rno:84474 InParanoid:Q641Y8 NextBio:616970
ArrayExpress:Q641Y8 Genevestigator:Q641Y8
GermOnline:ENSRNOG00000006652 Uniprot:Q641Y8
Length = 740
Score = 120 (47.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
Score = 119 (46.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 33/139 (23%), Positives = 73/139 (52%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLDNGVDI 342
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I+++ N + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ--ITSDGKR 400
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 401 LQVIVCSATLHSFDVKKLS 419
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 125 (49.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 36/134 (26%), Positives = 71/134 (52%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
R +VL T E A Q F + + +S +L+ + GG+ KA E + +++ATP +
Sbjct: 221 RVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRSGPDVVVATPGRL 280
Query: 296 LQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 354
+ H+ + + + +I +VLDEAD + + F ++++++ + Q QT+L +
Sbjct: 281 IDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELI--------RLCAQNRQTLLFS 332
Query: 355 AAIAEMLGEQLSSL 368
A + E + E L+S+
Sbjct: 333 ATMTEEIDE-LASM 345
Score = 93 (37.8 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 131 KSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXX 190
KS ++ V SF+++ L +++KA G P+ IQ IP L GK +
Sbjct: 140 KSLDTSVNV--SFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTG 197
Query: 191 RTLAYLLPLVQ 201
+T A++LP+++
Sbjct: 198 KTAAFVLPILE 208
Score = 61 (26.5 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 9 EQFIKYLEGAKEQTEQTEAEKLRKRKKMKRTGKSLV 44
E KYL K+QT + EK+ + +K+K TGK+++
Sbjct: 50 EDLQKYL---KKQTPTSLDEKIAEMRKLKNTGKAVI 82
Score = 41 (19.5 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 16 EGAKEQTEQTEAEKLRKRKKM 36
E EQ Q EA +RK+KKM
Sbjct: 5 ESDDEQV-QDEAVTVRKKKKM 24
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 135 (52.6 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 35/114 (30%), Positives = 56/114 (49%)
Query: 235 PRAIVLCTTEESADQ-GFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATP 292
P A+V+ T E A Q KF + R+ S + + + L+ I +IATP
Sbjct: 390 PYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEI--VIATP 447
Query: 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQ 346
++ +E R + YVVLDEAD + D GF P+++ +L+ + S LK +
Sbjct: 448 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENE 501
Score = 102 (41.0 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
S++E L +E++KAVE+ G PS IQ IP L + V+ +T A++LP++
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373
Query: 202 VYSQL 206
S+L
Sbjct: 374 YISRL 378
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 135 (52.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
PR ++LC T E A Q + +L ++ GGVS K E + + +LIATP
Sbjct: 76 PRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGR 135
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
++ + + + +++DEAD + D GF P+I KI
Sbjct: 136 LMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKI 173
Score = 98 (39.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
++F + GL ++KAV + G +P+ IQ IP +L G V +T A++LP++
Sbjct: 4 TTFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMI 63
Query: 201 Q 201
Q
Sbjct: 64 Q 64
>UNIPROTKB|F8WDT8 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC004938 HGNC:HGNC:18193 IPI:IPI00925990
ProteinModelPortal:F8WDT8 SMR:F8WDT8 Ensembl:ENST00000446987
ArrayExpress:F8WDT8 Bgee:F8WDT8 Uniprot:F8WDT8
Length = 185
Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 52/194 (26%), Positives = 94/194 (48%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q+
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 203 YSQLDEEHHLQLVG-ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H + G + + R L+P K + +A +S Q +A + +
Sbjct: 69 LL------HRKATGPVVEQAVRGLVLVPTKELARQA-------QSMIQ--QLATYCARDV 113
Query: 262 RLDS-SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADT 319
R+ + S VS +A+ + P +++ TPS +L H++ ++ D + +V+DEAD
Sbjct: 114 RVANVSAAEDSVSQRAV--LMEKP-DVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADL 170
Query: 320 LFDRGFGPEISKIL 333
LF GF E+ +L
Sbjct: 171 LFSFGFEEELKSLL 184
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 135 (52.6 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 30/100 (30%), Positives = 54/100 (54%)
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297
+V+C T E A Q + +AK + GG K ++ + +L+ATP +L
Sbjct: 230 LVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAKGVNLLVATPGRLLD 289
Query: 298 HIEDRN-VSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
H+E+ N +++++V+DEAD + ++ F ++ KILN L
Sbjct: 290 HLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLL 329
Score = 94 (38.1 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
E +K ++ +F+ L L K++++MG ++IQ IP ++ G+ V+
Sbjct: 141 EEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAART 200
Query: 188 XXXRTLAYLLPLVQV 202
+TLA+L+P V++
Sbjct: 201 GSGKTLAFLIPAVEL 215
Score = 45 (20.9 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 2 LLSPSTEEQFIKYLEG-AKEQTEQTEAE-KLRKRKKMKRTG 40
L P+ EE+ + +G AKE + E K +K+KK K+ G
Sbjct: 32 LKQPAMEEE-PDHEDGDAKENNALIDEEPKKKKKKKNKKRG 71
Score = 37 (18.1 bits), Expect = 9.8e-11, Sum P(3) = 9.8e-11
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 16 EGAKEQTEQTEAEKLRKR-KKMKRTG 40
+G E + E +K +K+ KK+++ G
Sbjct: 75 DGEDEAVAEEEPKKKKKKNKKLQQRG 100
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 130 (50.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 49/174 (28%), Positives = 83/174 (47%)
Query: 225 EALL--PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN 282
E LL P K R ++LC T E A Q +A I+ + + GG+S K E
Sbjct: 319 ERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 283 APIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSAL 341
++IATP + H+ + + + ++I +V+DEAD + + GF E+++I+ +
Sbjct: 379 KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQ----ACP 434
Query: 342 KSNGQGFQTILVTAAIAEMLGEQLSSLMECLER---DNAGKVTAMLLEMDQAEV 392
KS QT+L +A + + + + + + R DN K TA LL + V
Sbjct: 435 KSR----QTMLFSATMTDKVDDLIRLSLNRPVRVFVDNK-KTTAKLLTQEFVRV 483
Score = 107 (42.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
++EKS + SSFQ + L ++K + +G VP++IQ IP L GK +V
Sbjct: 248 DKEKSMMTTTH--SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVT 305
Query: 188 XXXRTLAYLLPLVQ 201
+T A+++P+++
Sbjct: 306 GSGKTAAFIVPILE 319
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 117 (46.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 44/156 (28%), Positives = 66/156 (42%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q + L S + GGV + +L+ATP +
Sbjct: 82 RALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDVLVATPGRL 141
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL-KDSALKSNGQGFQTILVT 354
L R V + +LDEAD + D GF +I K++ L KD F +
Sbjct: 142 LDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQNLLFSATFSPEI-- 199
Query: 355 AAIAE-MLGEQLSSLMECLERDNAGKVTAMLLEMDQ 389
A+A+ M+ L ++ E A KVT L +D+
Sbjct: 200 RALAKGMVNNPLEISVDA-ENSTAEKVTQWLTAVDK 234
Score = 115 (45.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
++ + F +LGL ++KAV G PS IQ IPAV++G+ V+ +T +
Sbjct: 2 SDTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFT 61
Query: 197 LPLVQ 201
LPL+Q
Sbjct: 62 LPLLQ 66
>UNIPROTKB|Q92499 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=NAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0007275 "multicellular organismal development"
evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0033677
"DNA/RNA helicase activity" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IDA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003712
"transcription cofactor activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IDA] [GO:0072669 "tRNA-splicing ligase complex"
evidence=IDA] [GO:0071920 "cleavage body" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0003724 "RNA helicase
activity" evidence=TAS] [GO:0090305 "nucleic acid phosphodiester
bond hydrolysis" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006446 GO:GO:0006351
GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985 SUPFAM:SSF49899
GO:GO:0003725 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
GO:GO:0004518 GO:GO:0010494 GO:GO:0000245 GO:GO:0008026
GO:GO:0043330 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143 GO:GO:0071920
GO:GO:0033677 CTD:1653 HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ
OrthoDB:EOG46HG95 HOGENOM:HOG000251633 EMBL:X70649 EMBL:BC012132
EMBL:BC053673 IPI:IPI00293655 RefSeq:NP_004930.1 UniGene:Hs.440599
ProteinModelPortal:Q92499 SMR:Q92499 IntAct:Q92499
MINT:MINT-5005493 STRING:Q92499 PhosphoSite:Q92499 DMDM:6919862
REPRODUCTION-2DPAGE:IPI00293655 PaxDb:Q92499 PeptideAtlas:Q92499
PRIDE:Q92499 Ensembl:ENST00000233084 Ensembl:ENST00000381341
GeneID:1653 KEGG:hsa:1653 UCSC:uc002rce.3 GeneCards:GC02P015731
HGNC:HGNC:2734 HPA:CAB012280 HPA:HPA034502 HPA:HPA034503 MIM:601257
neXtProt:NX_Q92499 PharmGKB:PA27199 InParanoid:Q92499
PhylomeDB:Q92499 ChiTaRS:DDX1 GenomeRNAi:1653 NextBio:6806
ArrayExpress:Q92499 Bgee:Q92499 CleanEx:HS_DDX1
Genevestigator:Q92499 GermOnline:ENSG00000079785 Uniprot:Q92499
Length = 740
Score = 120 (47.3 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
Score = 117 (46.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 33/139 (23%), Positives = 72/139 (51%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNIKQFKKYIDN-PKLRELLIIGGVAARDQLSVLENGVDI 342
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I+++ N + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ--VTSDGKR 400
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 401 LQVIVCSATLHSFDVKKLS 419
>UNIPROTKB|Q5NVJ8 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9601
"Pongo abelii" [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0032508
"DNA duplex unwinding" evidence=ISS] [GO:0033677 "DNA/RNA helicase
activity" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527
GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518 GO:GO:0010494
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0071920 GO:GO:0033677 CTD:1653
HOVERGEN:HBG005462 KO:K13177 HSSP:P10081 EMBL:CR926030
RefSeq:NP_001127099.1 UniGene:Pab.18409 ProteinModelPortal:Q5NVJ8
GeneID:100174133 KEGG:pon:100174133 InParanoid:Q5NVJ8
Uniprot:Q5NVJ8
Length = 740
Score = 120 (47.3 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
Score = 117 (46.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 33/139 (23%), Positives = 72/139 (51%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNIKQFKKYIDN-PKLRELLIIGGVAARDQLSVLENGVDI 342
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I+++ N + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ--VTSDGKR 400
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 401 LQVIVCSATLHSFDVKKLS 419
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 133 (51.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 40/139 (28%), Positives = 64/139 (46%)
Query: 225 EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAP 284
E L P RA++L T E A Q K + L +++ GG + +
Sbjct: 96 ERLKAPSPSGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHEN 155
Query: 285 IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 344
++IATP ++ + N+ + YVV DEAD LF+ GF ++ +IL L S
Sbjct: 156 PDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPGS----- 210
Query: 345 GQGFQTILVTAAIAEMLGE 363
QT+L +A + ++L E
Sbjct: 211 ---HQTVLFSATLPKLLVE 226
Score = 104 (41.7 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 26/76 (34%), Positives = 37/76 (48%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
A ++K SG FQ +GL + K V K G VP+ IQ IP +L G+ VV
Sbjct: 28 AQNKKKKSGG-------FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMA 80
Query: 186 XXXXXRTLAYLLPLVQ 201
+T +LLP+ +
Sbjct: 81 RTGSGKTACFLLPMFE 96
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 128 (50.1 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 35/105 (33%), Positives = 53/105 (50%)
Query: 237 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK-ALEDVSNAPIGMLIATPSEV 295
A+VL T E Q + L SS GG+ D+ P +++ATP +
Sbjct: 194 ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKP-HVIVATPGRI 252
Query: 296 LQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILN--PLK 337
+ H+E + S +++Y+V+DEAD L D FGP + KIL P+K
Sbjct: 253 MDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIK 297
Score = 104 (41.7 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 44/181 (24%), Positives = 74/181 (40%)
Query: 28 EKLRKRKKMKRTGKSLVNLSKVLYSVKQINSSPVIRPLSXXXXXXXXXXQQRVPSKPEKD 87
EKL KR+K K G + K LY+ + IN+ +I +++V S D
Sbjct: 11 EKL-KREKKKIFGV-ITPFQKYLYTPRIINTVHLI------IMSSKGITKKKVKSLKNLD 62
Query: 88 --SFILENFKLRKLNGSAKTXXXXXXXXXXXXXXXXXXXIASEREKSS----GSNAEV-V 140
+ E K + L K +S SS +AE+
Sbjct: 63 YTKKLAEKIKQQALQKQQKQQKQQEQENANHNQTESSLSSSSSTTSSSITTIDPDAELKF 122
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
+F+EL L ++++++E M P+ IQ IP L GK ++ +T A+ +P++
Sbjct: 123 KTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPIL 182
Query: 201 Q 201
Q
Sbjct: 183 Q 183
>UNIPROTKB|Q4R7L5 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9541
"Macaca fascicularis" [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003712 "transcription cofactor activity" evidence=ISS]
[GO:0004518 "nuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006302 "double-strand break repair"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0032508
"DNA duplex unwinding" evidence=ISS] [GO:0033677 "DNA/RNA helicase
activity" evidence=ISS] [GO:0071920 "cleavage body" evidence=ISS]
[GO:0072669 "tRNA-splicing ligase complex" evidence=ISS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003682 InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527
GO:GO:0006302 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449
PROSITE:PS50188 GO:GO:0072669 GO:GO:0004518 GO:GO:0010494
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0071920 GO:GO:0033677 HOVERGEN:HBG005462
OrthoDB:EOG46HG95 HSSP:P10081 EMBL:AB168800
ProteinModelPortal:Q4R7L5 PRIDE:Q4R7L5 Uniprot:Q4R7L5
Length = 740
Score = 120 (47.3 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
Score = 116 (45.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 33/139 (23%), Positives = 72/139 (51%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNIKQFKKYIDN-PKLRELLIIGGVAARDQLSVLENGVDI 342
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I+++ N + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLTQGYSDFINRMHNQIPQ--VTSDGKR 400
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 401 LQVIVCSATLHSFDVKKLS 419
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 119 (46.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 35/126 (27%), Positives = 61/126 (48%)
Query: 217 ITQMLRRDEALLPMKPMHPRAIVLCTTEESA---DQGFHM-AKFISHCARLDSSMENGGV 272
+ +L R ++P R+I+L T E A +Q + AK++ L + GGV
Sbjct: 56 VLPLLHRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLP----LTAMAMYGGV 111
Query: 273 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
+ + + +L+ATP +L R + D++ +VLDEAD + D GF +I+ I
Sbjct: 112 DAAPQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNI 171
Query: 333 LNPLKD 338
+ L +
Sbjct: 172 IEKLPE 177
Score = 112 (44.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F +LGL + ++KAV ++G P+ IQ IP++L GK+V+ +T +++LPL+
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 203 YS 204
++
Sbjct: 63 FA 64
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 119 (46.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 35/126 (27%), Positives = 61/126 (48%)
Query: 217 ITQMLRRDEALLPMKPMHPRAIVLCTTEESA---DQGFHM-AKFISHCARLDSSMENGGV 272
+ +L R ++P R+I+L T E A +Q + AK++ L + GGV
Sbjct: 56 VLPLLHRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLP----LTAMAMYGGV 111
Query: 273 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
+ + + +L+ATP +L R + D++ +VLDEAD + D GF +I+ I
Sbjct: 112 DAAPQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNI 171
Query: 333 LNPLKD 338
+ L +
Sbjct: 172 IEKLPE 177
Score = 112 (44.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F +LGL + ++KAV ++G P+ IQ IP++L GK+V+ +T +++LPL+
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 203 YS 204
++
Sbjct: 63 FA 64
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 125 (49.1 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L E A Q + K S L S GGVS + + + +++ATP
Sbjct: 141 RALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRF 200
Query: 296 LQHIE-DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 339
L H++ + + I YVV DEAD LF+ GF ++++IL+ L S
Sbjct: 201 L-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTS 244
Score = 112 (44.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
++ R K N + S+FQ +GL +++A+ K G P+ IQ IP +L G+ VV
Sbjct: 55 SNRRTKGKKGNGKA-SNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMA 113
Query: 186 XXXXXRTLAYLLPLVQ 201
+T A+++P+++
Sbjct: 114 RTGSGKTAAFVIPMIE 129
>UNIPROTKB|E2QRW3 [details] [associations]
symbol:DDX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 Ensembl:ENSCAFT00000005957 Uniprot:E2QRW3
Length = 785
Score = 122 (48.0 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 34/139 (24%), Positives = 73/139 (52%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + + +
Sbjct: 329 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLDNGVDI 387
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I++I N + + S+G+
Sbjct: 388 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRIHNQIPQ--ITSDGKR 445
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 446 LQVIVCSATLHSFDVKKLS 464
Score = 114 (45.2 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP 198
+ +S E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P
Sbjct: 44 LATSAYEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIP 103
Query: 199 LVQ-VYSQLDEE 209
++Q VY L ++
Sbjct: 104 VIQIVYETLKDQ 115
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 140 (54.3 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A C+RL S+ GG + D+ + + IATP
Sbjct: 164 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 222
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 223 RLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 266
Score = 89 (36.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V +F + ++ A+ P+ IQC G P L+G+ +V +TLAYLLP
Sbjct: 89 VFAFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPA 148
Query: 200 V 200
+
Sbjct: 149 I 149
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 186 (70.5 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 70/268 (26%), Positives = 120/268 (44%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF + + M + VE+ G + IQ +P V +GK ++ +T A+LLP++
Sbjct: 299 SFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIM- 357
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S+L +L +D +PR I+L T E ADQ ++ + S+ +
Sbjct: 358 --SRL-------------ILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQS 402
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
++ GG++ + +++ T V ED + D RY+VLDEAD +
Sbjct: 403 VMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMI 462
Query: 322 DR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME----CLERDN 376
D GFGPEI +I+N K+ + N + QT++ +A + E L+ + D
Sbjct: 463 DSMGFGPEIEQIIN-YKN--MPKNDKR-QTMMFSATFPSSVQEAARKLLREDYTMITIDK 518
Query: 377 AGKVTAMLLEMDQAEVFDLTESQDALKK 404
G +++ + E+ D T D L K
Sbjct: 519 IGAANKCVIQ--EFELCDRTSKVDKLLK 544
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 186 (70.5 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 70/268 (26%), Positives = 120/268 (44%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF + + M + VE+ G + IQ +P V +GK ++ +T A+LLP++
Sbjct: 299 SFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIM- 357
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S+L +L +D +PR I+L T E ADQ ++ + S+ +
Sbjct: 358 --SRL-------------ILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQS 402
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
++ GG++ + +++ T V ED + D RY+VLDEAD +
Sbjct: 403 VMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIKLDKCRYLVLDEADRMI 462
Query: 322 DR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME----CLERDN 376
D GFGPEI +I+N K+ + N + QT++ +A + E L+ + D
Sbjct: 463 DSMGFGPEIEQIIN-YKN--MPKNDKR-QTMMFSATFPSSVQEAARKLLREDYTMITIDK 518
Query: 377 AGKVTAMLLEMDQAEVFDLTESQDALKK 404
G +++ + E+ D T D L K
Sbjct: 519 IGAANKCVIQ--EFELCDRTSKVDKLLK 544
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 124 (48.7 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 37/127 (29%), Positives = 64/127 (50%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSE 294
RA+++ T E A Q F + K + L + GG + + P +L+ATP
Sbjct: 95 RALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENP-DILLATPGR 153
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 354
+L I + ++ ++YVV DEAD LF+ GF ++++ L + +S QT+L +
Sbjct: 154 LLHVIVEMDLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESR--------QTLLFS 205
Query: 355 AAIAEML 361
A + +ML
Sbjct: 206 ATLPKML 212
Score = 112 (44.5 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
+Q++GL + KA+EK G P+ IQ IP +++GK VV +T A+++P++Q
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 203 YSQLD 207
+ D
Sbjct: 86 LKRRD 90
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 181 (68.8 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 56/197 (28%), Positives = 97/197 (49%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF L L ++ A+ +G P+ IQ IP VL GK ++ +T +++LPL++
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
QL+ ++ + G +R AL+ + P A+ + E S Q AK++
Sbjct: 62 ---QLNSQY--KETGKKLRAKRIRALI-LVPTRELAVQV---EASISQ---YAKYLD--- 106
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ S GGV ++ + + +L+ATP +L R + D++ +VLDEAD +
Sbjct: 107 -ISSMAMYGGVDAQEQKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRML 165
Query: 322 DRGFGPEISKILNPLKD 338
D GF +I+KI+ L +
Sbjct: 166 DMGFIDDINKIIERLPE 182
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 183 (69.5 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 70/285 (24%), Positives = 132/285 (46%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ +F ++ + +++ ++ G+ P+ IQ G+P VL+G+ ++ +TL ++LP+
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FIS 258
+ + L EE I + E P A+V+C + E A Q + + + F++
Sbjct: 156 IIL--ALQEE-------IMMPIAAGEG--------PIALVICPSRELAKQTYDVVEQFVA 198
Query: 259 HCA-----RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
RL S + GGV ++ DV + +++ATP + + + +S D R +
Sbjct: 199 SLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLT 258
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD L D GF +I + + K QT+L +A + + +S +
Sbjct: 259 LDEADRLVDLGFEDDIRHVFDHFKSQR--------QTLLFSATMPAKIQIFATSALVKPV 310
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + Q+A K+V ++ L + P
Sbjct: 311 TVNVGRAGAANLDVIQ-EVEYV--KQEA---KIVYLLECLQKTTP 349
>MGI|MGI:2144727 [details] [associations]
symbol:Ddx1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006302 "double-strand
break repair" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISO] [GO:0008143 "poly(A) RNA binding"
evidence=ISO] [GO:0009615 "response to virus" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0033677 "DNA/RNA helicase activity"
evidence=ISO] [GO:0043330 "response to exogenous dsRNA"
evidence=IMP] [GO:0071920 "cleavage body" evidence=ISO] [GO:0072669
"tRNA-splicing ligase complex" evidence=ISO] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=ISO]
InterPro:IPR001650 InterPro:IPR003877 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00622 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2144727 GO:GO:0007275
GO:GO:0005524 GO:GO:0006355 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0003682 GO:GO:0009615 InterPro:IPR008985
SUPFAM:SSF49899 GO:GO:0003725 GO:GO:0004527 GO:GO:0006302
GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GO:GO:0072669 GO:GO:0004518 GO:GO:0010494 GO:GO:0008026
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0032508 GO:GO:0008143 GO:GO:0071920
GeneTree:ENSGT00660000095174 GO:GO:0033677 CTD:1653
HOVERGEN:HBG005462 KO:K13177 OMA:TLNNVKQ OrthoDB:EOG46HG95
HOGENOM:HOG000251633 EMBL:AK028341 EMBL:AK153335 EMBL:AK160982
EMBL:BC010624 IPI:IPI00127172 RefSeq:NP_598801.1 UniGene:Mm.251255
ProteinModelPortal:Q91VR5 SMR:Q91VR5 IntAct:Q91VR5 STRING:Q91VR5
PhosphoSite:Q91VR5 REPRODUCTION-2DPAGE:Q91VR5 PaxDb:Q91VR5
PRIDE:Q91VR5 Ensembl:ENSMUST00000071103 GeneID:104721
KEGG:mmu:104721 UCSC:uc007nbh.1 InParanoid:Q91VR5 NextBio:357236
Bgee:Q91VR5 CleanEx:MM_DDX1 Genevestigator:Q91VR5
GermOnline:ENSMUSG00000037149 Uniprot:Q91VR5
Length = 740
Score = 120 (47.3 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
Score = 114 (45.2 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 32/139 (23%), Positives = 72/139 (51%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLDNGVDI 342
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I+++ N + + +G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ--ITCDGKR 400
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 401 LQVIVCSATLHSFDVKKLS 419
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 120 (47.3 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
A + ++SG SF+ELG+ ++ +A E MG P+ IQ IP L G+ V+
Sbjct: 31 AKDETQTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLA 90
Query: 186 XXXXXRTLAYLLPLVQ 201
+T A+ LP++Q
Sbjct: 91 ETGSGKTAAFALPMLQ 106
Score = 108 (43.1 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 28/100 (28%), Positives = 49/100 (49%)
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297
+VL T E A Q + + + ++ GG+ A +++ATP +L
Sbjct: 118 LVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKPHIIVATPGRLLD 177
Query: 298 HIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
H+E+ + S +++Y+ +DEAD L D FG + KI+ L
Sbjct: 178 HLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRIL 217
>UNIPROTKB|F1NV49 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003877 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00622 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870 InterPro:IPR018355
SMART:SM00449 PROSITE:PS50188 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 IPI:IPI00585086
EMBL:AADN02018635 EMBL:AADN02018636 Ensembl:ENSGALT00000026560
ArrayExpress:F1NV49 Uniprot:F1NV49
Length = 740
Score = 120 (47.3 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
Score = 113 (44.8 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 33/139 (23%), Positives = 72/139 (51%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLEQGVDI 342
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I++I + + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQ--ITSDGKR 400
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 401 LQVIVCSATLHSFDVKKLS 419
>UNIPROTKB|Q90WU3 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003712 "transcription
cofactor activity" evidence=ISS] [GO:0006302 "double-strand break
repair" evidence=ISS] [GO:0004518 "nuclease activity" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0033677
"DNA/RNA helicase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0072669 "tRNA-splicing ligase complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003682 InterPro:IPR008985
SUPFAM:SSF49899 GO:GO:0004527 GO:GO:0006302 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0072669
GO:GO:0004518 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143 GO:GO:0033677 CTD:1653
HOVERGEN:HBG005462 KO:K13177 OrthoDB:EOG46HG95 EMBL:AY057383
IPI:IPI00585086 RefSeq:NP_989894.1 UniGene:Gga.14606 HSSP:P10081
ProteinModelPortal:Q90WU3 STRING:Q90WU3 PRIDE:Q90WU3 GeneID:395249
KEGG:gga:395249 HOGENOM:HOG000251633 NextBio:20815338
Uniprot:Q90WU3
Length = 740
Score = 120 (47.3 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDEE 209
+Q VY L ++
Sbjct: 61 IQIVYETLKDQ 71
Score = 113 (44.8 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 33/139 (23%), Positives = 72/139 (51%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + +
Sbjct: 284 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLEQGVDI 342
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I++I + + + S+G+
Sbjct: 343 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQ--ITSDGKR 400
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 401 LQVIVCSATLHSFDVKKLS 419
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 131 (51.2 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 39/119 (32%), Positives = 59/119 (49%)
Query: 225 EALL--PMKPMHPRAIVLCTTEESADQGFHMA-KFISHCARLDSSMENGGVSSKALEDVS 281
E LL P K R ++L T E A Q +A K SH + + GG+S K E
Sbjct: 315 ERLLYRPKKVPTSRVVILAPTRELAIQCHAVATKLASH-TDIKFCLAVGGLSLKVQESEL 373
Query: 282 NAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 339
++IATP + H+ + + + D + +VLDEAD + + GF E+++IL L S
Sbjct: 374 RLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKS 432
Score = 92 (37.4 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
A++ KS + +SFQ + L +++ + +G P+ IQ IP L GK VV
Sbjct: 242 AADEPKSDTNKGN--ASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGA 299
Query: 186 XXXXXRTLAYLLPLVQ 201
+T A+++P+++
Sbjct: 300 VTGSGKTAAFVVPILE 315
Score = 50 (22.7 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 3 LSPSTEEQFIKYLEGAKEQTEQTEAEKLRKRKKMKRTGKSLVN 45
+S + ++F++ E +E+ + K +KK KR+ K N
Sbjct: 18 ISDNEADEFVEEEEVIQEEAPPKKKSKTIPKKKQKRSSKKASN 60
>UNIPROTKB|I3LB32 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RARRDHF GeneTree:ENSGT00670000098028 EMBL:FP565347
RefSeq:XP_003355824.1 Ensembl:ENSSSCT00000027762 GeneID:100621490
KEGG:ssc:100621490 Uniprot:I3LB32
Length = 540
Score = 181 (68.8 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 70/256 (27%), Positives = 119/256 (46%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFV--PSEIQCVGIPAVLNGKSVVLXX 185
++E + N SF +LGL+ ++ A+++ V P+ +Q IP +L G+ ++
Sbjct: 113 QQEAPALRNLSSKDSFADLGLEPRVLSALQEAAPEVVRPTTVQSSTIPPLLGGRHILCAA 172
Query: 186 XXXXXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+TL Y+LPL+Q +L+G + D +P PR +VL + E
Sbjct: 173 ETGSGKTLGYMLPLLQ-----------RLLGQPSL---DSCRIPA----PRGLVLVPSRE 214
Query: 246 SADQGFHMAKFISHCARLDSSMENGG--VSSKALEDVSNAPIGMLIATPSEVLQHIEDRN 303
A+Q +A+ + L GG +S L+ P +L+ATP + + ++ +
Sbjct: 215 LAEQVRAVAQPLGSSLGLQVRELGGGHGMSRIRLQLSKQPPADVLVATPGALWKGLKSQL 274
Query: 304 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK----DSALKS--NGQGFQTILVTAAI 357
+S + + ++VLDEADTL D F + IL + LK N + Q +LV A
Sbjct: 275 ISLEQLSFLVLDEADTLLDESFLELVDYILEKSHIAEGPADLKDPFNPKA-QLVLVGATF 333
Query: 358 AEMLGEQLSSLMECLE 373
E + QL S CL+
Sbjct: 334 PEGVS-QLLSKAACLD 348
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 179 (68.1 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 55/200 (27%), Positives = 93/200 (46%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
EVV +F ELG++ E++KA E++G PS+IQ +P L GK V+ +T A+ +
Sbjct: 6 EVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAI 65
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
P++Q + + + + R D A A VL T E A Q + +
Sbjct: 66 PILQALLEYVYDSEPK-----KGRRPDPAFF--------ACVLSPTRELAIQIAEQFEAL 112
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDE 316
L ++ GG+ +++ATP + H+ D + S ++Y+VLDE
Sbjct: 113 GADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDE 172
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD L + F +++IL +
Sbjct: 173 ADRLLNEDFEKSLNQILEEI 192
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 116 (45.9 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTL 193
G V F+EL L +KA+EKMG + +Q IP +L G+ V+ +TL
Sbjct: 35 GEQTTCVEKFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTL 94
Query: 194 AYLLPLVQVYSQL 206
A+L+P +++ L
Sbjct: 95 AFLIPAIELLHSL 107
Score = 111 (44.1 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 31/118 (26%), Positives = 60/118 (50%)
Query: 228 LPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG 286
L KP + I++ T T E A Q F +A+ + + GG + + + +
Sbjct: 107 LKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVN 166
Query: 287 MLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 343
MLIATP +L H+++ + +++ +++DEAD + + GF E+ +I+ L + +S
Sbjct: 167 MLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQS 224
>UNIPROTKB|F8WAJ0 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AL160165 HGNC:HGNC:16715
IPI:IPI01010837 ProteinModelPortal:F8WAJ0 SMR:F8WAJ0
Ensembl:ENST00000438527 ArrayExpress:F8WAJ0 Bgee:F8WAJ0
Uniprot:F8WAJ0
Length = 722
Score = 142 (55.0 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 43/147 (29%), Positives = 75/147 (51%)
Query: 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVS 273
+ + Q L+ E+ + + P A+VL T E A Q F + K + + + GG
Sbjct: 158 IPVVQSLQAMESKI-QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEK 216
Query: 274 SKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
K+ + I +LI+TP ++ HI+ +N+ +R++V DEAD + D GF +I+ I
Sbjct: 217 RKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVI 276
Query: 333 LNPLKDSALKSNGQGFQTILVTAAIAE 359
LN A+ + Q Q +L++A + E
Sbjct: 277 LN-----AVNAECQKRQNVLLSATLTE 298
Score = 87 (35.7 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 141 SSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
++F ELGL +I + + + + +Q IP +L G+ ++ +TLAY +P+
Sbjct: 101 AAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPV 160
Query: 200 VQVYSQLDEE 209
VQ ++ +
Sbjct: 161 VQSLQAMESK 170
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 122 (48.0 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 31/103 (30%), Positives = 51/103 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
P ++ T E A Q F AK S L S GG+S A +++ATP
Sbjct: 302 PIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGR 361
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ ++ + ++ Y+VLDEAD +FD GF P++ I+ ++
Sbjct: 362 LIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIR 404
Score = 109 (43.4 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V +F++ G ++++ A++K P+ IQC +P VL+G+ V+ +T A++LP+
Sbjct: 227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPM 286
Query: 200 V 200
+
Sbjct: 287 I 287
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 128 (50.1 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 36/128 (28%), Positives = 61/128 (47%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q K + L +++ GG + + ++IATP +
Sbjct: 168 RALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRL 227
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
+ + N+ + YVV DEAD LF+ GF ++ +I+ L G QT+L +A
Sbjct: 228 VHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPG--------GHQTVLFSA 279
Query: 356 AIAEMLGE 363
+ ++L E
Sbjct: 280 TLPKLLVE 287
Score = 104 (41.7 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 129 REKSSGSNAEVVSS--FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
RE N + S FQ +GL + K + K G VP+ IQ IP +L+GK VV
Sbjct: 82 REMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMAR 141
Query: 187 XXXXRTLAYLLPLVQ 201
+T +L+P+ +
Sbjct: 142 TGSGKTACFLIPMFE 156
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 119 (46.9 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F LGL A ++KA+E+ G PS IQ IPAVL GK V+ +T + LP++++
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 203 YSQ 205
++
Sbjct: 63 LAK 65
Score = 106 (42.4 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 32/103 (31%), Positives = 45/103 (43%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q L S++ GGV +L+ATP +
Sbjct: 75 RALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRL 134
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338
+ V D + +VLDEAD + D GF +I KIL L +
Sbjct: 135 MDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE 177
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 119 (46.9 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F LGL A ++KA+E+ G PS IQ IPAVL GK V+ +T + LP++++
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
Query: 203 YSQ 205
++
Sbjct: 63 LAK 65
Score = 106 (42.4 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 32/103 (31%), Positives = 45/103 (43%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q L S++ GGV +L+ATP +
Sbjct: 75 RALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGRL 134
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338
+ V D + +VLDEAD + D GF +I KIL L +
Sbjct: 135 MDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPE 177
>TAIR|locus:2010306 [details] [associations]
symbol:EMB1586 "embryo defective 1586" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009663 "plasmodesma organization"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0010497
"plasmodesmata-mediated intercellular transport" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524 GO:GO:0003723
EMBL:AC012187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010497 EMBL:AC025417 EMBL:AY062618 EMBL:AY114691
EMBL:AK175587 EMBL:AK175711 EMBL:AK175751 EMBL:AK175793
EMBL:AK176044 EMBL:AK176194 EMBL:AK226229 EMBL:AK229878
EMBL:AK230085 IPI:IPI00521991 PIR:H86260 RefSeq:NP_172737.2
UniGene:At.47876 ProteinModelPortal:Q8W4E1 SMR:Q8W4E1 PaxDb:Q8W4E1
PRIDE:Q8W4E1 EnsemblPlants:AT1G12770.1 GeneID:837833
KEGG:ath:AT1G12770 GeneFarm:1026 TAIR:At1g12770
HOGENOM:HOG000239285 InParanoid:Q8W4E1 OMA:IRVSNFV PhylomeDB:Q8W4E1
ProtClustDB:CLSN2681499 Genevestigator:Q8W4E1 GO:GO:0009663
Uniprot:Q8W4E1
Length = 551
Score = 180 (68.4 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 73/292 (25%), Positives = 124/292 (42%)
Query: 137 AEVVS------SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXX 190
AE+VS SF+ELGL ++ ++E+ G VP+++Q +PA++ G V+
Sbjct: 100 AEIVSPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSG 159
Query: 191 RTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 250
+TLAYLLP++ L E+ ++ +R E +A+++ + E Q
Sbjct: 160 KTLAYLLPILSEIGPLAEKSRSSH---SENDKRTEI---------QAMIVAPSRELGMQI 207
Query: 251 FH-MAKFISHCARLDSSMENGGVSSKALEDV--SNAPIGMLIATPSEVLQHIEDRNVSCD 307
+ K + R GG + E+ N P +++ TP + + + +
Sbjct: 208 VREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKP-AIVVGTPGRIAEISKGGKLHTH 266
Query: 308 DIRYVVLDEADTLFDRGFGPEISKILNPL-KDSALKSNGQ-----GFQTILVTAAIAEML 361
R++VLDE D L F +I +IL + K S G+ QTILV+A + +
Sbjct: 267 GCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSV 326
Query: 362 GEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
S A KVT + A V LT + ++ + SL
Sbjct: 327 IRAAKSWSHEPVLVQANKVTPLDTVQPSAPVMSLTPTTSEADGQIQTTIQSL 378
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 118 (46.6 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 34/102 (33%), Positives = 51/102 (50%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q + S + S + GGVS + +L+ATP +
Sbjct: 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRL 136
Query: 296 LQHIEDRN-VSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
L +E +N V D + +VLDEAD + D GF +I ++L L
Sbjct: 137 LD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKL 177
Score = 107 (42.7 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF LGL ++++AV + G P+ IQ IPAVL G+ ++ +T + LPL+Q
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 136 (52.9 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 51/189 (26%), Positives = 85/189 (44%)
Query: 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIAT 291
M P +VL T E A Q A +R+ + GG L D+ +++AT
Sbjct: 229 MGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGA-DIVVAT 287
Query: 292 PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTI 351
P + +E R +S I Y+VLDEAD + D GF P+I KI+ K+ K QT+
Sbjct: 288 PGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIV---KEIPTKR-----QTL 339
Query: 352 LVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMD 411
+ TA + + + + L+ + N G V ++ + ++ + K++ +E +
Sbjct: 340 MYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPME--KQRRLEQI- 396
Query: 412 SLHLSAPGS 420
L PGS
Sbjct: 397 -LRSQEPGS 404
Score = 91 (37.1 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
S G + SF+ G E+++ V G P+ IQ P + G+ +V +
Sbjct: 149 SGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGK 208
Query: 192 TLAYLLP 198
TL YL+P
Sbjct: 209 TLGYLIP 215
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 181 (68.8 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 52/207 (25%), Positives = 104/207 (50%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFV-PSEIQCVGIPAVLNGKSVVLXXXXX 188
+++G+N+ + SF ++ + E+I + + P+ +Q IP + + ++
Sbjct: 212 EATGTNSPGHIESFHDVDM-GEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTG 270
Query: 189 XXRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESA 247
+T A+LLP++ Q+YS+ E TQ ++ + +P ++VL T E A
Sbjct: 271 SGKTAAFLLPVLSQIYSEGPGEALQATKASTQ---QENGKYVRRKQYPISLVLAPTRELA 327
Query: 248 DQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC 306
Q + A+ ++ +R+ + GG + + D+ +L+ATP ++ +E +
Sbjct: 328 LQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGL 386
Query: 307 DDIRYVVLDEADTLFDRGFGPEISKIL 333
D +Y+VLDEAD + D GF P+I +I+
Sbjct: 387 DYCKYLVLDEADRMLDMGFEPQIRRIV 413
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 180 (68.4 bits), Expect = 9.9e-11, P = 9.9e-11
Identities = 52/192 (27%), Positives = 85/192 (44%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF LGL +++A+E G P+ +Q IPAVL G+ +++ +T + LP+++
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
L G+ +R P PR +VL T E A Q K +
Sbjct: 62 ---------RLFPNGVPDKSQRHG------PRQPRVLVLTPTRELAAQVHESFKLYARDL 106
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ S+ GGV + + +L+A P +L +V + +VLDEAD +
Sbjct: 107 KFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRML 166
Query: 322 DRGFGPEISKIL 333
D GF ++ K+L
Sbjct: 167 DMGFVHDVKKVL 178
>ASPGD|ASPL0000034540 [details] [associations]
symbol:spb4 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0030686 "90S preribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000027 "ribosomal large
subunit assembly" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001306 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:AACD01000052
HOGENOM:HOG000268803 KO:K14809 OMA:CACVEYW RefSeq:XP_660780.1
ProteinModelPortal:Q5B8F4 STRING:Q5B8F4
EnsemblFungi:CADANIAT00009893 GeneID:2873958 KEGG:ani:AN3176.2
OrthoDB:EOG46MFT3 Uniprot:Q5B8F4
Length = 638
Score = 180 (68.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 59/198 (29%), Positives = 95/198 (47%)
Query: 152 MIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQVYSQLDE--- 208
++ AV MG + +Q IP + K VV+ +TL++L+P+V+ +L+E
Sbjct: 25 VLDAVSSMGFTRMTPVQASAIPLFMAHKDVVVEAVTGSGKTLSFLIPVVEKLLRLEEPIK 84
Query: 209 EHHLQ--LVGITQMLRRD--EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 264
+HH+ +V T+ L L + HP + + T E+ D K S R+
Sbjct: 85 KHHVGAIIVSPTRELASQIYNVLTSLLAFHPASAAVINTSETED--VPRPKHSSSVLRVV 142
Query: 265 SSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCDDIRY--VVLDEAD 318
+ GG +S A ED+S +P +L+ATP +L+ + +V C + +VLDEAD
Sbjct: 143 PQLLLGGSTSPA-EDLSTFLKRSP-NLLVATPGRLLELLSSPHVYCPQSSFEMLVLDEAD 200
Query: 319 TLFDRGFGPEISKILNPL 336
L D GF + IL L
Sbjct: 201 RLLDLGFKETLQNILRRL 218
>UNIPROTKB|Q9H8H2 [details] [associations]
symbol:DDX31 "Probable ATP-dependent RNA helicase DDX31"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AL354735 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
EMBL:AF427339 EMBL:AF335567 EMBL:AF335568 EMBL:AF335569
EMBL:AK023695 EMBL:AK027002 EMBL:AK027484 EMBL:AL160165
EMBL:BC012726 IPI:IPI00043990 IPI:IPI00291296 IPI:IPI00552374
IPI:IPI00552716 RefSeq:NP_073616.6 RefSeq:NP_619526.1
UniGene:Hs.660767 ProteinModelPortal:Q9H8H2 SMR:Q9H8H2
IntAct:Q9H8H2 PhosphoSite:Q9H8H2 DMDM:71153334 SWISS-2DPAGE:Q9H8H2
PaxDb:Q9H8H2 PRIDE:Q9H8H2 DNASU:64794 Ensembl:ENST00000310532
Ensembl:ENST00000372153 Ensembl:ENST00000372155
Ensembl:ENST00000372159 GeneID:64794 KEGG:hsa:64794 UCSC:uc004cbq.1
UCSC:uc004cbs.2 UCSC:uc010mzu.1 CTD:64794 GeneCards:GC09M135468
HGNC:HGNC:16715 HPA:HPA020891 neXtProt:NX_Q9H8H2 PharmGKB:PA27218
HOVERGEN:HBG103793 InParanoid:Q9H8H2 OMA:ARIGCHG OrthoDB:EOG42V8FK
PhylomeDB:Q9H8H2 GenomeRNAi:64794 NextBio:66862 ArrayExpress:Q9H8H2
Bgee:Q9H8H2 CleanEx:HS_DDX31 Genevestigator:Q9H8H2
GermOnline:ENSG00000125485 Uniprot:Q9H8H2
Length = 851
Score = 142 (55.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 43/147 (29%), Positives = 75/147 (51%)
Query: 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVS 273
+ + Q L+ E+ + + P A+VL T E A Q F + K + + + GG
Sbjct: 287 IPVVQSLQAMESKI-QRSDGPYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEK 345
Query: 274 SKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
K+ + I +LI+TP ++ HI+ +N+ +R++V DEAD + D GF +I+ I
Sbjct: 346 RKSEKARLRKGINILISTPGRLVDHIKSTKNIHFSRLRWLVFDEADRILDLGFEKDITVI 405
Query: 333 LNPLKDSALKSNGQGFQTILVTAAIAE 359
LN A+ + Q Q +L++A + E
Sbjct: 406 LN-----AVNAECQKRQNVLLSATLTE 427
Score = 87 (35.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 141 SSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
++F ELGL +I + + + + +Q IP +L G+ ++ +TLAY +P+
Sbjct: 230 AAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPV 289
Query: 200 VQVYSQLDEE 209
VQ ++ +
Sbjct: 290 VQSLQAMESK 299
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 142 (55.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A C+RL S+ GG + D+ + + IATP
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 224
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
Score = 84 (34.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
P+ IQC G P L+G+ +V +TLAYLLP +
Sbjct: 115 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 151
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 142 (55.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A C+RL S+ GG + D+ + + IATP
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 224
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
Score = 84 (34.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
P+ IQC G P L+G+ +V +TLAYLLP +
Sbjct: 115 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 151
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 142 (55.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A C+RL S+ GG + D+ + + IATP
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 224
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
Score = 84 (34.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
P+ IQC G P L+G+ +V +TLAYLLP +
Sbjct: 115 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 151
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 142 (55.0 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A C+RL S+ GG + D+ + + IATP
Sbjct: 166 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 224
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 225 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
Score = 84 (34.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
P+ IQC G P L+G+ +V +TLAYLLP +
Sbjct: 115 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 151
>ZFIN|ZDB-GENE-041001-215 [details] [associations]
symbol:ddx1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-041001-215
GO:GO:0005524 GO:GO:0003676 InterPro:IPR008985 SUPFAM:SSF49899
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR001870
InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
CTD:1653 KO:K13177 EMBL:BX649472 EMBL:BX005358 IPI:IPI00511501
RefSeq:NP_001184253.1 UniGene:Dr.19466 ProteinModelPortal:F1R2L8
Ensembl:ENSDART00000023963 GeneID:556790 KEGG:dre:556790
NextBio:20881663 ArrayExpress:F1R2L8 Bgee:F1R2L8 Uniprot:F1R2L8
Length = 740
Score = 115 (45.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 34/136 (25%), Positives = 69/136 (50%)
Query: 235 PRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIA 290
PRA+++ ++E A+Q + K++ + +L + GGV++K +V + + +++
Sbjct: 287 PRALIIEPSKELAEQTLNNVNQFKKYVDN-PKLRELLIIGGVAAKEQLNVLESGVDIVVG 345
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 350
TP + I + +R++VLDE D L G I +I N + + S+G+ Q
Sbjct: 346 TPGRLDDLISTGKLDLSQVRFLVLDECDGLLSAGNTDFIMRIYNQIPQ--VTSDGKRLQV 403
Query: 351 ILVTAAIAEMLGEQLS 366
I+ +A + ++LS
Sbjct: 404 IVCSATLHSFDVKKLS 419
Score = 114 (45.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P+
Sbjct: 1 MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV 60
Query: 200 VQ-VYSQLDE 208
+Q VY + +
Sbjct: 61 IQIVYETIKD 70
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 119 (46.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q + L S GGV +A + + +L+ATP +
Sbjct: 75 RALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRL 134
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
+ R V ++I VVLDEAD + D GF I+KI++ L
Sbjct: 135 MDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCL 175
Score = 102 (41.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF +LGL +++ V ++G P+ IQ IP +L G+ ++ +T +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 202 VYSQ 205
Q
Sbjct: 62 KLRQ 65
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 119 (46.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 34/101 (33%), Positives = 50/101 (49%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q + L S GGV +A + + +L+ATP +
Sbjct: 75 RALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVATPGRL 134
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
+ R V ++I VVLDEAD + D GF I+KI++ L
Sbjct: 135 MDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCL 175
Score = 102 (41.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF +LGL +++ V ++G P+ IQ IP +L G+ ++ +T +++LP+++
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 202 VYSQ 205
Q
Sbjct: 62 KLRQ 65
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 142 (55.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A C+RL S+ GG + D+ + + IATP
Sbjct: 245 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 303
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 304 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 347
Score = 84 (34.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
P+ IQC G P L+G+ +V +TLAYLLP +
Sbjct: 194 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 230
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 123 (48.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 39/129 (30%), Positives = 65/129 (50%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
R ++L + E A Q + K + L S + GG S + + ++IATP
Sbjct: 163 RGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRF 222
Query: 296 LQHIE-DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 354
L H++ + N+ I+YVV DEAD LF+ GF ++++IL+ L + QT+L +
Sbjct: 223 L-HLKVEMNLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTR--------QTLLFS 273
Query: 355 AAIAEMLGE 363
A + + L E
Sbjct: 274 ATLPKSLVE 282
Score = 107 (42.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 127 SEREKSSGSNAEVVSS---FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVL 183
S KS+ V FQ +GL A ++KA+ + G VP+ IQ IP ++ + VV
Sbjct: 74 SANRKSANLKGRTVKKGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVG 133
Query: 184 XXXXXXXRTLAYLLPLVQ 201
+T A+++P+++
Sbjct: 134 MARTGSGKTAAFVIPMIE 151
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 142 (55.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A C+RL S+ GG + D+ + + IATP
Sbjct: 245 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 303
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 304 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 347
Score = 84 (34.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
P+ IQC G P L+G+ +V +TLAYLLP +
Sbjct: 194 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 230
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 128 (50.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 41/150 (27%), Positives = 74/150 (49%)
Query: 222 RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV- 280
R E LL RA+V+ + E A+Q +A+ +S L + GG ++
Sbjct: 212 RLQEDLLAGSERSIRAVVIVPSRELAEQVNSVARSVSERFGLVVKVVGGGRGVGTIKAAF 271
Query: 281 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 340
+ +L++TP +L+ + R +S ++ ++V+DEADT+FD F + KIL+ + ++
Sbjct: 272 ARGQPDILVSTPGALLKALWKRFISLSELYFLVIDEADTMFDDSFAGMLEKILSHTQVAS 331
Query: 341 LKSNGQGF----QTILVTAAIAEMLGEQLS 366
S G Q ++V A +G+ LS
Sbjct: 332 RLSETIGLARKAQLVVVGATFPGGVGDVLS 361
Score = 96 (38.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 18/71 (25%), Positives = 38/71 (53%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
E G++A +F L E+++ +++ + P+ +Q IP +L G++++
Sbjct: 141 EGDDGASASK-KTFHCFNLCPELVETLQRQNIIHPTTVQLQTIPKILKGRNILCAAETGS 199
Query: 190 XRTLAYLLPLV 200
+TL YLLP++
Sbjct: 200 GKTLTYLLPII 210
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 142 (55.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A C+RL S+ GG + D+ + + IATP
Sbjct: 247 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 305
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 306 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 349
Score = 84 (34.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
P+ IQC G P L+G+ +V +TLAYLLP +
Sbjct: 196 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 232
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 142 (55.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 34/104 (32%), Positives = 53/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A C+RL S+ GG + D+ + + IATP
Sbjct: 247 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 305
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 306 RLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 349
Score = 84 (34.6 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
P+ IQC G P L+G+ +V +TLAYLLP +
Sbjct: 196 PTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAI 232
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 179 (68.1 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 75/287 (26%), Positives = 130/287 (45%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SGS+ + +F+E L + K V K G + IQ IP ++ G+ ++ +
Sbjct: 277 SGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGK 336
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ HL + G+ A +K P AI++ T E +Q +
Sbjct: 337 TAAFLLPILA---------HLMVKGV-----ESSAFQTLK--EPEAIIVAPTRELINQIY 380
Query: 252 HMAKFISHCARLDSSMENGGVSS-KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S+ + + GG +L+ +S +L ATP +L I + +R
Sbjct: 381 LDARKFSYGTCVRPVVIYGGTQMFHSLKQISEG-CNILCATPGRLLDVIRKEKIGLTKLR 439
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
Y+VLDEAD + D GF +I N LK S + S + QT++ +A + + L+ E
Sbjct: 440 YLVLDEADRMLDMGFREDIE---NLLKSSGMPSKEER-QTLMFSATFPSSI-QSLAR--E 492
Query: 371 CLERDN----AGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
L+ D G+V +++Q V ++ E K K++E + +
Sbjct: 493 ILKPDYLFVVVGQVGGACSDVEQM-VIEVDEF--GKKDKLMEILQEI 536
>RGD|1304895 [details] [associations]
symbol:Ddx31 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 31"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304895
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000075041
EMBL:CH474001 UniGene:Rn.63648 Ensembl:ENSRNOT00000064323
Uniprot:G3V9V8
Length = 682
Score = 142 (55.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 39/127 (30%), Positives = 68/127 (53%)
Query: 235 PRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293
P A+VL T E A Q F + K + + + GG K+ + I +LI+TP
Sbjct: 179 PYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPG 238
Query: 294 EVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 352
++ HI+ +N+ + +R++V+DEAD + D GF +++ ILN A+ + Q Q +L
Sbjct: 239 RLVDHIKSTKNIHFNRVRWLVVDEADRILDLGFEKDVTVILN-----AVNAECQKRQNVL 293
Query: 353 VTAAIAE 359
++A + E
Sbjct: 294 LSATLTE 300
Score = 83 (34.3 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
+FQEL L +I + + + + +Q IP +L G+ ++ +TLAY +P+V
Sbjct: 104 AFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 163
Query: 201 Q 201
Q
Sbjct: 164 Q 164
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 132 (51.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 45/181 (24%), Positives = 85/181 (46%)
Query: 235 PRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATP 292
P ++L T E A Q ++KF +R+ ++ GGV + D+S + + IATP
Sbjct: 199 PIVLILAPTRELAVQIQAEISKF-GKSSRIRNTCVYGGVPKGPQIRDLSRG-VEVCIATP 256
Query: 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 352
++ +E + + Y+VLDEAD + D GF P+I KI+ ++ QT++
Sbjct: 257 GRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDR--------QTLM 308
Query: 353 VTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLE-MDQ-AEVFDLTESQDALKKKVVEAM 410
+A + + + ++ + N G + + Q EV +E +D + + + + M
Sbjct: 309 WSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVM 368
Query: 411 D 411
D
Sbjct: 369 D 369
Score = 91 (37.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
GS+ + V +F E G ++ V+ G P+ IQ G P L+G+ VV +T
Sbjct: 117 GSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKT 176
Query: 193 LAYLLP-LVQVYSQ 205
L Y LP +V + +Q
Sbjct: 177 LTYCLPAIVHINAQ 190
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 178 (67.7 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 55/208 (26%), Positives = 103/208 (49%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G + + +S F +L L + + ++ G P+ +Q IPA+ G+ ++
Sbjct: 220 EATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGS 279
Query: 190 XRTLAYLLPLVQVYSQ--LDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESA 247
+T A+L+PLV Q D H +T R K +P A+VL T E +
Sbjct: 280 GKTAAFLVPLVNAILQDGPDAVHR----SVTSSGGR-------KKQYPSALVLSPTRELS 328
Query: 248 DQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVS 305
Q F+ ++ ++ + S++ GG + + + +G +LIATP ++ ++ +
Sbjct: 329 LQIFNESRKFAYRTPITSALLYGGRENYK-DQIHKLRLGCHILIATPGRLIDVMDQGLIG 387
Query: 306 CDDIRYVVLDEADTLFDRGFGPEISKIL 333
+ RY+VLDEAD + D GF P+I +I+
Sbjct: 388 MEGCRYLVLDEADRMLDMGFEPQIRQIV 415
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 178 (67.7 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 56/203 (27%), Positives = 97/203 (47%)
Query: 133 SGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SGSN + + +F+E GL + K V K G P+ +Q GIP + G+ ++ +
Sbjct: 268 SGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGK 327
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++Q + D V ++ E P AI++ T E +Q +
Sbjct: 328 TAAFLLPILQRF-MTDG------VAASKFSEIQE---------PEAIIVAPTRELINQIY 371
Query: 252 HMAKFISHCARLDSSMENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ ++ + + GG+++ + +V +L ATP + I + +R
Sbjct: 372 LEARKFAYGTCVRPVVVYGGINTGYTIREVLKG-CNVLCATPGRLHDLIGRGKIGLSKVR 430
Query: 311 YVVLDEADTLFDRGFGPEISKIL 333
Y+VLDEAD + D GF PE+ K++
Sbjct: 431 YLVLDEADRMLDMGFEPEMRKLV 453
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 126 (49.4 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPS 293
PR ++L T E A Q + + + + + GG + + + ++ P ++ATP
Sbjct: 74 PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP-HFIVATPG 132
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338
+ H+E +N+ + + ++LDEAD + D GF P++ K +N D
Sbjct: 133 RIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQL-KAINEAAD 176
Score = 94 (38.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
F + L ++++++ MG+ P+ IQ +P L GK ++ +TLA+LLP +Q
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQ 61
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 126 (49.4 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPS 293
PR ++L T E A Q + + + + + GG + + + ++ P ++ATP
Sbjct: 74 PRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAKEP-HFIVATPG 132
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338
+ H+E +N+ + + ++LDEAD + D GF P++ K +N D
Sbjct: 133 RIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQL-KAINEAAD 176
Score = 94 (38.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
F + L ++++++ MG+ P+ IQ +P L GK ++ +TLA+LLP +Q
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQ 61
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 136 (52.9 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 47/176 (26%), Positives = 77/176 (43%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
PR +VL T E A Q + R+ S GG+ A + +AP+ ++ATP
Sbjct: 74 PRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAPVDFIVATPGR 133
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 354
++ ++ R++ + +VLDEAD + D GF ++ +I A + QT+L T
Sbjct: 134 LVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIA--AASPATR------QTLLFT 185
Query: 355 AAIAEMLGEQLSSLMECLER-DNAG-KVTAMLLEMDQAEVFDLTESQDALKKKVVE 408
A + + L+ ER D AG K T +E DL L+ + +
Sbjct: 186 ATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHLITD 241
Score = 83 (34.3 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F EL L ++KAV G P+ +Q +P L ++ +T A++LP +Q
Sbjct: 2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61
>DICTYBASE|DDB_G0292108 [details] [associations]
symbol:DDB_G0292108 "DEAD-box ATP-dependent RNA
helicase" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292108 GO:GO:0005524
EMBL:AAFI02000187 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_629833.1 ProteinModelPortal:Q54DN9
EnsemblProtists:DDB0184228 GeneID:8628514 KEGG:ddi:DDB_G0292108
OMA:HVSEDYL Uniprot:Q54DN9
Length = 829
Score = 124 (48.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 38/160 (23%), Positives = 72/160 (45%)
Query: 213 QLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGG 271
+LV + +R+ + P + P ++L ++E Q + + I + +S++E GG
Sbjct: 263 ELVEKLERIRKLKIKKPFNEIDPIGLILLPSKELVTQVSNEINQLIKNIRIEESTIEGGG 322
Query: 272 -VSSKALEDVSNAP---------IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ +L N P + ++I TP + Q + +S +R V+DE D LF
Sbjct: 323 KIRVLSLMGGVNEPKQVKTLKSGVDIIIGTPGRIYQLLNQEQLSLQQVRMTVIDEFDKLF 382
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+ GF P+I I L ++ QT+L +A + +
Sbjct: 383 NLGFFPDIRDIFQYLPQIRSRTKPFSMQTVLTSATLTHRM 422
Score = 103 (41.3 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
+ F+E GL E+I+++++ P+++Q IP + G++ V +T AYLLP +
Sbjct: 94 NDFKEFGLSNELIESIKENNWEKPTDVQKQVIPLIFKGRNTVFSSVTGSGKTGAYLLPFI 153
Query: 201 QV 202
Q+
Sbjct: 154 QI 155
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 175 (66.7 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 64/215 (29%), Positives = 97/215 (45%)
Query: 129 REKSSGSNAEVVSSFQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
RE+S+ V+SF++ G A ++ + K G PS IQ P +L+G+ +
Sbjct: 71 REESTVKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQT 130
Query: 188 XXXRTLAYLLP-LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEES 246
+TLA+LLP L+ + +QL Q + DE KP P +VL T E
Sbjct: 131 GSGKTLAFLLPALLHIDAQL-----------AQYEKNDEE---QKPS-PFVLVLSPTREL 175
Query: 247 ADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC 306
A Q K S+ + GG + +E + ++IATP + D +S
Sbjct: 176 AQQIEGEVKKYSYNGYKSVCLYGGGSRPEQVE-ACRGGVEIVIATPGRLTDLSNDGVISL 234
Query: 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSAL 341
+ YVVLDEAD + D GF I +IL ++ L
Sbjct: 235 ASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDRL 269
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 130 (50.8 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 33/105 (31%), Positives = 57/105 (54%)
Query: 235 PRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATP 292
P ++L T E A Q ++KF +R+ ++ GGV + D+S + + IATP
Sbjct: 214 PIVLILAPTRELAVQIQAEISKF-GKSSRIRNTCVYGGVPKGPQIRDLSRG-VEVCIATP 271
Query: 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 272 GRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR 316
Score = 92 (37.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP- 198
V +F E G ++ V+ G P+ IQ G P L+G+ VV +TL+Y LP
Sbjct: 139 VETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPA 198
Query: 199 LVQVYSQ 205
+V + +Q
Sbjct: 199 IVHINAQ 205
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 135 (52.6 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 34/104 (32%), Positives = 52/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A S RL S+ GG + D+ + + IATP
Sbjct: 156 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 214
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 215 RLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 258
Score = 87 (35.7 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + + +F E A +++ +++ P+ IQ G P L+G +V +T
Sbjct: 74 GHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 133
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 134 LSYLLPAI 141
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 135 (52.6 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 34/104 (32%), Positives = 52/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A S RL S+ GG + D+ + + IATP
Sbjct: 164 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 222
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 223 RLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 266
Score = 87 (35.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + + +F E A +++ +++ P+ IQ G P L+G +V +T
Sbjct: 82 GHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 141
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 142 LSYLLPAI 149
>UNIPROTKB|Q9NUL7 [details] [associations]
symbol:DDX28 "Probable ATP-dependent RNA helicase DDX28"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 GO:GO:0042645 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AF329821 EMBL:AK002144
EMBL:AC130462 EMBL:BC024273 IPI:IPI00020050 RefSeq:NP_060850.2
UniGene:Hs.458313 ProteinModelPortal:Q9NUL7 SMR:Q9NUL7
IntAct:Q9NUL7 PhosphoSite:Q9NUL7 DMDM:296434476 PaxDb:Q9NUL7
PRIDE:Q9NUL7 Ensembl:ENST00000332395 GeneID:55794 KEGG:hsa:55794
UCSC:uc002evh.2 CTD:55794 GeneCards:GC16M068055 HGNC:HGNC:17330
HPA:HPA041911 MIM:607618 neXtProt:NX_Q9NUL7 PharmGKB:PA27214
HOGENOM:HOG000008689 HOVERGEN:HBG081424 InParanoid:Q9NUL7
OMA:RARRDHF OrthoDB:EOG42RD7H PhylomeDB:Q9NUL7 GenomeRNAi:55794
NextBio:60915 Bgee:Q9NUL7 CleanEx:HS_DDX28 Genevestigator:Q9NUL7
GermOnline:ENSG00000182810 Uniprot:Q9NUL7
Length = 540
Score = 175 (66.7 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 58/196 (29%), Positives = 97/196 (49%)
Query: 142 SFQELGLKAEMIKAVEKMGLFV--PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
SF +LGL+ ++ A+++ V P+ +Q IP++L G+ VV +TL+YLLPL
Sbjct: 127 SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPL 186
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q +L+G + D +P PR +VL + E A Q +A+ +
Sbjct: 187 LQ-----------RLLGQPSL---DSLPIPA----PRGLVLVPSRELAQQVRAVAQPLGR 228
Query: 260 C-ARLDSSMENGGVSSKALEDVSNAPIG-MLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
L +E G + +S P +L+ATP + + ++ R +S + + ++VLDEA
Sbjct: 229 SLGLLVRDLEGGHGMRRIRLQLSRQPSADVLVATPGALWKALKSRLISLEQLSFLVLDEA 288
Query: 318 DTLFDRGFGPEISKIL 333
DTL D F + IL
Sbjct: 289 DTLLDESFLELVDYIL 304
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 176 (67.0 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 54/208 (25%), Positives = 99/208 (47%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
++SG N V++F E+ L + + + P+ +Q IP +L G+ ++
Sbjct: 148 ETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGS 207
Query: 190 XRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
+T A+ P++ S + ++ H+Q R + ++P A++L T E A Q
Sbjct: 208 GKTAAFCFPII---SGIMKDQHVQ---------RPRG---SRTVYPLAVILSPTRELASQ 252
Query: 250 GFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD 308
AK S+ + + GG ++ L ++ + +L+ATP + +E VS
Sbjct: 253 IHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERG-VDILVATPGRLNDLLERARVSMQM 311
Query: 309 IRYVVLDEADTLFDRGFGPEISKILNPL 336
IR++ LDEAD + D GF P+I KI+ +
Sbjct: 312 IRFLALDEADRMLDMGFEPQIRKIVEQM 339
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 120 (47.3 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 35/128 (27%), Positives = 61/128 (47%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q K + L +++ GG + + ++IATP +
Sbjct: 168 RALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENPDIIIATPGRL 227
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
+ + ++ + YVV DEAD LF+ GF ++ +I+ L G QT+L +A
Sbjct: 228 VHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPG--------GHQTVLFSA 279
Query: 356 AIAEMLGE 363
+ ++L E
Sbjct: 280 TLPKLLVE 287
Score = 107 (42.7 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 129 REKSSGSNAEVVSS--FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
RE N + S FQ +GL + K + K G VP+ IQ IP +L+GK VV
Sbjct: 82 REMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMAR 141
Query: 187 XXXXRTLAYLLPLVQ 201
+T +LLP+ +
Sbjct: 142 TGSGKTACFLLPMFE 156
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 119 (46.9 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 58/204 (28%), Positives = 89/204 (43%)
Query: 233 MH--PRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLI 289
MH P A+VL T E A Q KF S+ G + +S +++
Sbjct: 322 MHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGA-HIVV 380
Query: 290 ATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL-------KDSAL- 341
ATP +L +E R YVV+DEAD + D GF +++KIL+ L KD ++
Sbjct: 381 ATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSIL 440
Query: 342 ---KSNGQGFQTILVTAAIAEMLGEQLSS-LME--CLERDNAGKVTAMLLEMDQAEVFDL 395
S+ QTI+ +A + + S L+E L N G+ +D+ E
Sbjct: 441 ATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQA------VDRVEQRVE 494
Query: 396 TESQDALK-KKVVEAMDSLHLSAP 418
S D+ K ++V E ++S S P
Sbjct: 495 MISDDSKKWRRVEEILESNRFSPP 518
Score = 105 (42.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+++E GL +EM+K ++K+ PS IQ IP +L K ++ +T A+++PL+
Sbjct: 250 NWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309
Query: 202 VYSQL 206
S+L
Sbjct: 310 AISKL 314
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 176 (67.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 51/206 (24%), Positives = 102/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++GSN + +F ++ + ++ +E P+ +Q IP + + ++
Sbjct: 164 EATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGS 223
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+Y+ E L+ V ++ + +P ++VL T E A
Sbjct: 224 GKTAAFLLPILSQIYTDGPGEA-LKAV-------KENGRYGRRKQYPISLVLAPTRELAV 275
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 276 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 334
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 335 FCKYLVLDEADRMLDMGFEPQIRRIV 360
>TAIR|locus:2077592 [details] [associations]
symbol:AT3G06980 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006399 "tRNA metabolic process" evidence=RCA]
[GO:0006655 "phosphatidylglycerol biosynthetic process"
evidence=RCA] [GO:0009658 "chloroplast organization" evidence=RCA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=RCA] [GO:0010103 "stomatal complex morphogenesis"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006968
GO:GO:0003723 EMBL:AC016827 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13179 EMBL:AJ296275 EMBL:AY048260 EMBL:AY113064
EMBL:BT002520 IPI:IPI00545954 RefSeq:NP_187354.1 UniGene:At.18753
ProteinModelPortal:Q8GUG7 SMR:Q8GUG7 IntAct:Q8GUG7 STRING:Q8GUG7
PaxDb:Q8GUG7 PRIDE:Q8GUG7 EnsemblPlants:AT3G06980.1 GeneID:819883
KEGG:ath:AT3G06980 KEGG:dosa:Os03t0108600-01 GeneFarm:1029
TAIR:At3g06980 HOGENOM:HOG000078675 InParanoid:Q8GUG7 OMA:ANCRSIS
PhylomeDB:Q8GUG7 ProtClustDB:CLSN2915517 Genevestigator:Q8GUG7
GermOnline:AT3G06980 Uniprot:Q8GUG7
Length = 781
Score = 177 (67.4 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 57/196 (29%), Positives = 94/196 (47%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F E+G +M+KA+++ P+ IQ + V++GKS ++ +TLAYL+P++Q
Sbjct: 375 TFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L EE +L G ++ P PR IVL T E A Q + IS
Sbjct: 435 ---RLREE---ELQGHSKS----------SPGCPRVIVLVPTAELASQVLANCRSISKSG 478
Query: 262 -RLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
S + GG + LE++ + +LIATP + + + ++R +LDE D
Sbjct: 479 VPFRSMVVTGGFRQRTQLENLEQG-VDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDI 537
Query: 320 LF-DRGFGPEISKILN 334
LF D F + ++N
Sbjct: 538 LFGDDEFEAALQNLIN 553
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 176 (67.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 51/206 (24%), Positives = 102/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++GSN + +F ++ + ++ +E P+ +Q IP + + ++
Sbjct: 167 EATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGS 226
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+Y+ E L+ V ++ + +P ++VL T E A
Sbjct: 227 GKTAAFLLPILSQIYTDGPGEA-LKAV-------KENGRYGRRKQYPISLVLAPTRELAV 278
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 279 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 337
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 338 FCKYLVLDEADRMLDMGFEPQIRRIV 363
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 176 (67.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 51/206 (24%), Positives = 101/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 168 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 227
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+YS E + M ++ + +P ++VL T E A
Sbjct: 228 GKTAAFLLPILSQIYSDGPGE------ALRAM--KENGRYGRRKQYPISLVLAPTRELAV 279
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 280 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 338
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 339 FCKYLVLDEADRMLDMGFEPQIRRIV 364
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 176 (67.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 51/206 (24%), Positives = 101/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 169 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 228
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+YS E + M ++ + +P ++VL T E A
Sbjct: 229 GKTAAFLLPILSQIYSDGPGE------ALRAM--KENGRYGRRKQYPISLVLAPTRELAV 280
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 281 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 339
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 340 FCKYLVLDEADRMLDMGFEPQIRRIV 365
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 176 (67.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 51/206 (24%), Positives = 101/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 169 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 228
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+YS E + M ++ + +P ++VL T E A
Sbjct: 229 GKTAAFLLPILSQIYSDGPGE------ALRAM--KENGRYGRRKQYPISLVLAPTRELAV 280
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 281 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 339
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 340 FCKYLVLDEADRMLDMGFEPQIRRIV 365
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 176 (67.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 51/206 (24%), Positives = 101/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 169 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 228
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+YS E + M ++ + +P ++VL T E A
Sbjct: 229 GKTAAFLLPILSQIYSDGPGE------ALRAM--KENGRYGRRKQYPISLVLAPTRELAV 280
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 281 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 339
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 340 FCKYLVLDEADRMLDMGFEPQIRRIV 365
>ZFIN|ZDB-GENE-031113-10 [details] [associations]
symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
Uniprot:B1H1J4
Length = 759
Score = 136 (52.9 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 42/149 (28%), Positives = 69/149 (46%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
P+ +VL T E A Q K I+ +L + GG S D + I +L+ TP
Sbjct: 241 PKVLVLAPTRELAIQVTKDFKDITR--KLSVTCFYGGSSYNPQIDAIRSGIDVLVGTPGR 298
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 354
+ H+++ + +++VVLDE D + D GF ++ +IL+ S K Q QT+L +
Sbjct: 299 IRDHLQNNKLDLSQLQHVVLDEVDQMLDMGFAEQVEEILSA---SYKKDAEQKPQTLLFS 355
Query: 355 AAIAEMLGEQLSSLM--ECLERDNAGKVT 381
A + + M + + D GK T
Sbjct: 356 ATCPSWVYDVAKKYMRSQFIHVDLIGKKT 384
Score = 79 (32.9 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 26/125 (20%), Positives = 48/125 (38%)
Query: 85 EKDSFILENFKLRKLNGSAKTXXXXXXXXXXXXXXXXXXXIASEREKSSGSNAEVVSSFQ 144
E+ + +LE K K+ + SE+EK + E +F
Sbjct: 112 EETNTLLEKKKKIKMEKEEEKMMNGDSHTHSTEPAASSTDSDSEQEKETPEQRE--GAFS 169
Query: 145 ELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQVYS 204
+ IK ++ G+ +IQ AV +GK ++ +T ++ +PLV+
Sbjct: 170 NFRISPNTIKLLQARGVSYLFDIQVKTFNAVYDGKDLIGQARTGTGKTFSFAVPLVEKLQ 229
Query: 205 QLDEE 209
D+E
Sbjct: 230 SGDQE 234
Score = 49 (22.3 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 15 LEGAKEQTEQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQ 55
LE +E+T T EK +K+KK+K + ++ + L K+
Sbjct: 83 LEEEEEETTSTLLEK-KKKKKIKLEKEEMMEETNTLLEKKK 122
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 179 (68.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 57/205 (27%), Positives = 96/205 (46%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ S+ E G E+I ++K+G P+ IQ IP L + ++ +TLA+L+PL
Sbjct: 393 IRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPL 452
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L + L+ V D+ P AI++ T E A Q
Sbjct: 453 LSWIQSLPKIERLEDV--------DQG--------PYAIIMAPTRELAQQIEEETTKFGQ 496
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ + + GG+S + E +G ++IATP ++ +E+R + + Y+VLDEA
Sbjct: 497 PLGIRTVVVVGGLSRE--EQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEA 554
Query: 318 DTLFDRGFGPEISKILNPLKDSALK 342
D + D GF P++ KIL + + LK
Sbjct: 555 DRMIDMGFEPDVQKILEYMPVTNLK 579
Score = 42 (19.8 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 19 KEQTE-QTEAEKLRKRKKMKR 38
K +TE + E EK+R KKMKR
Sbjct: 329 KRRTEAEKEQEKVRL-KKMKR 348
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 176 (67.0 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 51/206 (24%), Positives = 101/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 211 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 270
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+YS E + M ++ + +P ++VL T E A
Sbjct: 271 GKTAAFLLPILSQIYSDGPGE------ALRAM--KENGRYGRRKQYPISLVLAPTRELAV 322
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 323 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 381
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 382 FCKYLVLDEADRMLDMGFEPQIRRIV 407
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 117 (46.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 38/153 (24%), Positives = 65/153 (42%)
Query: 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 273
++ Q L ++ AL PR ++L T E A Q F + + + + + GG +
Sbjct: 56 IIPALQRLSKNRAL---SKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGEN 112
Query: 274 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
V ++ATP + H+ + + + ++LDEAD + D GF E+++I
Sbjct: 113 FNDQVKVLQKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI- 171
Query: 334 NPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366
N D K F L A + E E L+
Sbjct: 172 NKAADHR-KRQTLLFSATLDHAQVNEFATELLT 203
Score = 102 (41.0 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F + GL + ++ +E MG P++IQ IPA + G ++ +TLA+++P +Q
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 203 YSQ 205
S+
Sbjct: 63 LSK 65
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 117 (46.2 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 38/153 (24%), Positives = 65/153 (42%)
Query: 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS 273
++ Q L ++ AL PR ++L T E A Q F + + + + + GG +
Sbjct: 56 IIPALQRLSKNRAL---SKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGEN 112
Query: 274 SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
V ++ATP + H+ + + + ++LDEAD + D GF E+++I
Sbjct: 113 FNDQVKVLQKEPEFIVATPGRLADHLTQGHFHLNGLELLILDEADRMLDLGFSKELTQI- 171
Query: 334 NPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366
N D K F L A + E E L+
Sbjct: 172 NKAADHR-KRQTLLFSATLDHAQVNEFATELLT 203
Score = 102 (41.0 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F + GL + ++ +E MG P++IQ IPA + G ++ +TLA+++P +Q
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 203 YSQ 205
S+
Sbjct: 63 LSK 65
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 176 (67.0 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 69/284 (24%), Positives = 128/284 (45%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 277 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 336
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ GIT R + L P I++ T E +Q +
Sbjct: 337 TAAFLLPILA---------HMMHDGITAS--RFKEL-----QEPECIIVAPTRELVNQIY 380
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + + GG ++ + +L ATP ++ I + I+
Sbjct: 381 LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIK 439
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
Y+VLDEAD + D GFGPE+ K+++ + S Q QT++ +A E + + ++
Sbjct: 440 YLVLDEADRMLDMGFGPEMKKLISC---PGMPSKEQR-QTLMFSATFPEEIQRLAAEFLK 495
Query: 371 CLERDNA-GKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
A G+V ++ QA DL Q + ++K++E + ++
Sbjct: 496 SNYLFVAVGQVGGACRDVQQA---DLQVGQYSKREKLLEILRNI 536
>UNIPROTKB|G5EHR3 [details] [associations]
symbol:MGCH7_ch7g509 "ATP-dependent RNA helicase DED1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
EMBL:CM001237 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 RefSeq:XP_003720990.1 ProteinModelPortal:G5EHR3
EnsemblFungi:MGG_02762T0 GeneID:2682767 KEGG:mgr:MGG_02762
Uniprot:G5EHR3
Length = 619
Score = 175 (66.7 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 51/196 (26%), Positives = 95/196 (48%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F++ GL M+K V+ G VP+ IQ IPA+ G V+ +T A+L+P++
Sbjct: 124 FEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAIHKGHDVIGIAQTGSGKTAAFLIPVIN- 182
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ + L + + P++ P +++C T E A Q F+ A+ + + +
Sbjct: 183 -KLMGKAKKLAAPRPNPVEYNMDIHGPVRA-EPLVVIVCPTRELAIQAFNEARKLCYRSM 240
Query: 263 LDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRN--VSCDDIRYVVLDEAD 318
L + GG ++ + +G +L ATP +L H D+ ++ +RYVV+DEAD
Sbjct: 241 LRPGVVYGG--GNFMDQIRQIGLGCDILCATPGRLL-HFMDKPELLNLQRVRYVVIDEAD 297
Query: 319 TLFDRGFGPEISKILN 334
+ + ++ KI++
Sbjct: 298 EMLTADWEEDMKKIMS 313
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 137 (53.3 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 47/142 (33%), Positives = 70/142 (49%)
Query: 225 EALLPMKPMHP--RAIVLCTTEESADQGFHMAKFISHCARLDS---SMENGGVSSKALED 279
+ L+ ++P P RA+VL T E A Q H K H + + GGVS+K +
Sbjct: 65 QQLISVQPCKPELRALVLTPTRELAQQ-VH--KSFCHYGQFTDVTIGIAYGGVSTK--KQ 119
Query: 280 VSNAPIGM--LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
+S +G+ LIATP +L + +VS +I +V DEAD + D GF EI +I L
Sbjct: 120 ISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLP 179
Query: 338 DSALKSNGQGFQTILVTAAIAE 359
+ QT+L +A A+
Sbjct: 180 KTK--------QTLLFSATFAD 193
Score = 79 (32.9 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F L + ++KA+ + P+EIQ IP +L V+ +T A+ LP++Q
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 137 (53.3 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 47/142 (33%), Positives = 70/142 (49%)
Query: 225 EALLPMKPMHP--RAIVLCTTEESADQGFHMAKFISHCARLDS---SMENGGVSSKALED 279
+ L+ ++P P RA+VL T E A Q H K H + + GGVS+K +
Sbjct: 65 QQLISVQPCKPELRALVLTPTRELAQQ-VH--KSFCHYGQFTDVTIGIAYGGVSTK--KQ 119
Query: 280 VSNAPIGM--LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
+S +G+ LIATP +L + +VS +I +V DEAD + D GF EI +I L
Sbjct: 120 ISELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLP 179
Query: 338 DSALKSNGQGFQTILVTAAIAE 359
+ QT+L +A A+
Sbjct: 180 KTK--------QTLLFSATFAD 193
Score = 79 (32.9 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F L + ++KA+ + P+EIQ IP +L V+ +T A+ LP++Q
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 174 (66.3 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 63/286 (22%), Positives = 132/286 (46%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ +F+++ ++ +++ G+ P+ IQ G+P +L G+ ++ +TL ++LP+
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAK-FI 257
+ + Q +E ++P+ P +++C + E A Q + + + F+
Sbjct: 205 IMIALQ------------------EEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFV 246
Query: 258 SHCAR-----LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ L S + GG+ ++ +V + +++ATP + + + +S D RY+
Sbjct: 247 APLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYL 306
Query: 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372
LDEAD L D GF +I ++ + K QT+L +A + + S +
Sbjct: 307 TLDEADRLVDLGFEDDIREVFDHFKSQR--------QTLLFSATMPTKIQIFARSALVKP 358
Query: 373 ERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q EV + Q+A K+V ++ L ++P
Sbjct: 359 VTVNVGRAGAANLDVIQ-EVEYV--KQEA---KIVYLLECLQKTSP 398
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 175 (66.7 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 53/195 (27%), Positives = 93/195 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ +F+E L + + V + G + +Q IP ++ G+ ++ +T A+LLP+
Sbjct: 273 ILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPI 332
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ Y ++E GIT A ++ P AI++ T E +Q + A+ S+
Sbjct: 333 LS-Y-MMNE-------GIT-------ASQYLQLQEPEAIIIAPTRELINQIYLDARKFSY 376
Query: 260 CARLDSSMENGGVSS-KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ + GG+ A+ DV +L ATP +L + + +RY+VLDEAD
Sbjct: 377 GTCVRPVVVYGGIQPVHAMRDVEKG-CNILCATPGRLLDIVSKEKIGLSKLRYLVLDEAD 435
Query: 319 TLFDRGFGPEISKIL 333
+ D GF PEI K++
Sbjct: 436 RMLDMGFAPEIEKLM 450
>UNIPROTKB|F1NRD9 [details] [associations]
symbol:DDX1 "ATP-dependent RNA helicase DDX1" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043330
"response to exogenous dsRNA" evidence=IEA] [GO:0071920 "cleavage
body" evidence=IEA] [GO:0072669 "tRNA-splicing ligase complex"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006302 "double-strand break
repair" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0032508
"DNA duplex unwinding" evidence=IEA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003682
InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0003725 GO:GO:0006302
GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GO:GO:0072669 GO:GO:0004518 GO:GO:0010494 GO:GO:0008026
GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508
GO:GO:0008143 GO:GO:0071920 GeneTree:ENSGT00660000095174
GO:GO:0033677 OMA:TLNNVKQ EMBL:AADN02018635 EMBL:AADN02018636
IPI:IPI00819903 ProteinModelPortal:F1NRD9
Ensembl:ENSGALT00000036885 ArrayExpress:F1NRD9 Uniprot:F1NRD9
Length = 742
Score = 113 (44.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 33/139 (23%), Positives = 72/139 (51%)
Query: 232 PMHPRAIVLCTTEESADQGFH----MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
P P+A+++ + E A+Q + K+I + +L + GGV+++ V + +
Sbjct: 286 PNAPKALIVEPSRELAEQTLNNVKQFKKYIDN-PKLRELLIIGGVAARDQLSVLEQGVDI 344
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
++ TP + + ++ +R++VLDEAD L +G+ I++I + + + S+G+
Sbjct: 345 VVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQ--ITSDGKR 402
Query: 348 FQTILVTAAIAEMLGEQLS 366
Q I+ +A + ++LS
Sbjct: 403 LQVIVCSATLHSFDVKKLS 421
Score = 111 (44.1 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 145 ELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ-VY 203
E+G+ E+ +AVE+M +P++IQ IP +L G V++ +T A+ +P++Q VY
Sbjct: 6 EMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVY 65
Query: 204 SQLDEE 209
L ++
Sbjct: 66 ETLKDQ 71
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 110 (43.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ F++LGL ++KAV +G +P+ IQ IP +L G ++V +T AYLLP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 200 VQ 201
+Q
Sbjct: 61 LQ 62
Score = 108 (43.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 285 IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 344
+ +++ TP +L HI + +I+ V+LDEAD + D GF +I ILN L +N
Sbjct: 120 VEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL------TN 173
Query: 345 GQGFQTILVTAAI 357
Q QT+L +A +
Sbjct: 174 RQ--QTLLFSATL 184
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/119 (21%), Positives = 52/119 (43%)
Query: 197 LPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
+P + QVY +L E ++ G+ +L + LP++ AIV C T++ D+
Sbjct: 211 VPAIRQVYYELPETEKIE--GLVSILNSE---LPIQ-----AIVFCRTKKRVDEVVEQLN 260
Query: 256 FISHCAR-LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
F + A+ L M ++ ++ +L+AT + R + D+ +V+
Sbjct: 261 FRGYAAKGLHGDMSQRE-RTQTIKSFKAGKTELLVATD------VAARGLDIPDVSHVI 312
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 110 (43.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ F++LGL ++KAV +G +P+ IQ IP +L G ++V +T AYLLP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 200 VQ 201
+Q
Sbjct: 61 LQ 62
Score = 108 (43.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 285 IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 344
+ +++ TP +L HI + +I+ V+LDEAD + D GF +I ILN L +N
Sbjct: 120 VEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL------TN 173
Query: 345 GQGFQTILVTAAI 357
Q QT+L +A +
Sbjct: 174 RQ--QTLLFSATL 184
Score = 55 (24.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/119 (21%), Positives = 52/119 (43%)
Query: 197 LPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
+P + QVY +L E ++ G+ +L + LP++ AIV C T++ D+
Sbjct: 211 VPAIRQVYYELPETEKIE--GLVSILNSE---LPIQ-----AIVFCRTKKRVDEVVEQLN 260
Query: 256 FISHCAR-LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
F + A+ L M ++ ++ +L+AT + R + D+ +V+
Sbjct: 261 FRGYAAKGLHGDMSQRE-RTQTIKSFKAGKTELLVATD------VAARGLDIPDVSHVI 312
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 117 (46.2 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 29/104 (27%), Positives = 52/104 (50%)
Query: 235 PRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293
P ++L T E A Q KF + + G + D+ + ++IATP
Sbjct: 239 PIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRG-VEIVIATPG 297
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E ++ + + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 298 RLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIR 341
Score = 104 (41.7 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 127 SEREKS-SGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLX 184
+ER+ S G + + + FQ+ +++A+ K+G P+ IQ G P L G+ ++
Sbjct: 149 TERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGI 208
Query: 185 XXXXXXRTLAYLLP-LVQVYSQ 205
+TLAYLLP LV V +Q
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQ 230
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 122 (48.0 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 32/105 (30%), Positives = 55/105 (52%)
Query: 235 PRAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATP 292
P +VL T E A Q +KF +R+ ++ GG + D++ + + IATP
Sbjct: 201 PIVLVLAPTRELAVQIQTECSKF-GKSSRIRNTCVYGGAPKGPQIRDLARG-VEICIATP 258
Query: 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 259 GRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 303
Score = 98 (39.6 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP- 198
+++F E G +++ V+ G P+ IQC G P L+G+ ++ +TL+Y LP
Sbjct: 126 ITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPS 185
Query: 199 LVQVYSQ 205
+V + +Q
Sbjct: 186 IVHINAQ 192
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 174 (66.3 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 51/206 (24%), Positives = 102/206 (49%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 170 EATGNNCPRHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 229
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+Y+ E L+ V ++ + +P ++VL T E A
Sbjct: 230 GKTAAFLLPILSQIYTDGPGEA-LKAV-------KENGRYGRRKQYPISLVLAPTRELAV 281
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 282 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 340
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 341 FCKYLVLDEADRMLDMGFEPQIRRIV 366
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 127 (49.8 bits), Expect = 5.9e-10, Sum P(3) = 5.9e-10
Identities = 37/119 (31%), Positives = 62/119 (52%)
Query: 225 EALL--PMKPMHPRAIVLCTTEESA----DQGFHMAKFISHCARLDSSMENGGVSSKALE 278
E LL P K R IVL T E A D G +A+F+S + + GG++ + E
Sbjct: 291 ERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSG---ITFGLAVGGLNLRQQE 347
Query: 279 DVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
+ + ++IATP + HI + + + D + +V+DEAD + + GF E+++I+ L
Sbjct: 348 QMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLL 406
Score = 98 (39.6 bits), Expect = 5.9e-10, Sum P(3) = 5.9e-10
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 131 KSSGSNA--EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXX 188
++ G A ++ +F L L ++K + +G PS IQ IP L GK ++
Sbjct: 219 ETEGDEAKKQMYENFNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTG 278
Query: 189 XXRTLAYLLPLVQ 201
+T A+++P+++
Sbjct: 279 SGKTAAFMIPIIE 291
Score = 37 (18.1 bits), Expect = 5.9e-10, Sum P(3) = 5.9e-10
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 20 EQTEQTEAEKLRK 32
+Q E+TE EK+ K
Sbjct: 129 KQEEETEKEKVEK 141
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 173 (66.0 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 50/206 (24%), Positives = 101/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 167 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 226
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+Y+ E + M ++ + +P ++VL T E A
Sbjct: 227 GKTAAFLLPILSQIYTDGPGE------ALRAM--KENGKYGRRKQYPISLVLAPTRELAV 278
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 279 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 337
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 338 FCKYLVLDEADRMLDMGFEPQIRRIV 363
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 173 (66.0 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 50/206 (24%), Positives = 101/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 168 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 227
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+Y+ E + M ++ + +P ++VL T E A
Sbjct: 228 GKTAAFLLPILSQIYTDGPGE------ALRAM--KENGKYGRRKQYPISLVLAPTRELAV 279
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 280 QIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 338
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 339 FCKYLVLDEADRMLDMGFEPQIRRIV 364
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 173 (66.0 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 51/204 (25%), Positives = 100/204 (49%)
Query: 133 SGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
+G+N + SF ++ + ++ +E P+ +Q IP + + ++ +
Sbjct: 171 TGNNCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGK 230
Query: 192 TLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 250
T A+LLP++ Q+Y+ E L+ V ++ + +P ++VL T E A Q
Sbjct: 231 TAAFLLPILSQIYTDGPGEA-LKAV-------KESGRYGRRKQYPISLVLAPTRELAVQI 282
Query: 251 FHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
+ A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 283 YEEARKFSYRSRVLPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLDFC 341
Query: 310 RYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 342 KYLVLDEADRMLDMGFEPQIRRII 365
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 173 (66.0 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 50/206 (24%), Positives = 101/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 169 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 228
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+Y+ E + M ++ + +P ++VL T E A
Sbjct: 229 GKTAAFLLPILSQIYADGPGE------ALRAM--KENGRYGRRKQYPISLVLAPTRELAV 280
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 281 QIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 339
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 340 FCKYLVLDEADRMLDMGFEPQIRRIV 365
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 173 (66.0 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 50/206 (24%), Positives = 101/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 169 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 228
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+Y+ E + M ++ + +P ++VL T E A
Sbjct: 229 GKTAAFLLPILSQIYADGPGE------ALRAM--KENGRYGRRKQYPISLVLAPTRELAV 280
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 281 QIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 339
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 340 FCKYLVLDEADRMLDMGFEPQIRRIV 365
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 110 (43.8 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 26/105 (24%), Positives = 56/105 (53%)
Query: 231 KPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLI 289
KP + +++ + T E A Q + +A+ + + GG S K E+ + +L+
Sbjct: 187 KPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKPEEERLEKGVNLLV 246
Query: 290 ATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
ATP +L H+++ + +++ +++DEAD + + GF E+ +I+
Sbjct: 247 ATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQII 291
Score = 91 (37.1 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
EK G + E + F L ++ K++E+MG + IQ I +L GK ++
Sbjct: 109 EKELGISKESIE-FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGS 167
Query: 190 XRTLAYLLPLVQV 202
+TLA+L+P ++V
Sbjct: 168 GKTLAFLIPAIEV 180
Score = 58 (25.5 bits), Expect = 7.8e-10, Sum P(3) = 7.8e-10
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 22 TEQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQINSSPVIRP 64
T T ++K+++ K+ K K + L+ SVKQI S V+ P
Sbjct: 26 TTTTASKKVKQTKQSKAQAKEIQELASTP-SVKQIQSQKVLVP 67
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 172 (65.6 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 51/208 (24%), Positives = 101/208 (48%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++GSN + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 147 EATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 206
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLR--RDEALLPMKPMHPRAIVLCTTEES 246
+T A+LLP++ Q+Y+ G LR ++ + +P ++VL T E
Sbjct: 207 GKTAAFLLPILSQIYAD----------GPGDALRAMKENGRYGRRKQYPISLVLAPTREL 256
Query: 247 ADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305
A Q + A+ ++ +R+ + GG + + D+ +L+ATP ++ +E +
Sbjct: 257 AVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIG 315
Query: 306 CDDIRYVVLDEADTLFDRGFGPEISKIL 333
D +Y+VLDEAD + D GF P+I +I+
Sbjct: 316 LDFCKYLVLDEADRMLDMGFEPQIRRIV 343
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 172 (65.6 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 49/206 (23%), Positives = 102/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + +F ++ + ++ +E P+ +Q IP + + ++
Sbjct: 168 EATGNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 227
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+Y+ E + M ++ + +P ++VL T E A
Sbjct: 228 GKTAAFLLPILSQIYTDGPGE------ALKAM--KENGRYGRRKQYPISLVLAPTRELAV 279
Query: 249 QGFHMAKFISHCARLDSSMENGGVSS-KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + + D+ +L+ATP ++ +E + D
Sbjct: 280 QIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 338
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 339 FCKYLVLDEADRMLDMGFEPQIRRIV 364
>UNIPROTKB|F1N5H8 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:DAAA02032283
IPI:IPI00837660 UniGene:Bt.35580 ProteinModelPortal:F1N5H8
PRIDE:F1N5H8 Ensembl:ENSBTAT00000042916 Uniprot:F1N5H8
Length = 736
Score = 142 (55.0 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 39/127 (30%), Positives = 67/127 (52%)
Query: 235 PRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293
P A++L T E A Q F + K + + + GG K+ + I +LI+TP
Sbjct: 208 PYALILVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILISTPG 267
Query: 294 EVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 352
++ HI+ +N+ IR+++LDEAD + D GF +++ ILN A+ + Q Q +L
Sbjct: 268 RLVDHIKSTKNIHFRQIRWLILDEADRILDLGFEKDLTVILN-----AVNAECQERQNVL 322
Query: 353 VTAAIAE 359
++A + E
Sbjct: 323 LSATLTE 329
Score = 77 (32.2 bits), Expect = 8.4e-10, Sum P(2) = 8.4e-10
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
+FQ L L +I + + + + +Q IP +L G+ ++ +TLAY +P+V
Sbjct: 133 AFQALDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 192
Query: 201 Q 201
Q
Sbjct: 193 Q 193
>TAIR|locus:2064844 [details] [associations]
symbol:AT2G40700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0006406 "mRNA export from
nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] [GO:0009561 "megagametogenesis" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0042991 "transcription factor
import into nucleus" evidence=RCA] [GO:0051604 "protein maturation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
EMBL:AJ010468 IPI:IPI00518934 PIR:G84832 PIR:T51746
RefSeq:NP_181602.1 UniGene:At.47 ProteinModelPortal:Q7XJN0
SMR:Q7XJN0 STRING:Q7XJN0 PaxDb:Q7XJN0 PRIDE:Q7XJN0
EnsemblPlants:AT2G40700.1 GeneID:818665 KEGG:ath:AT2G40700
GeneFarm:934 TAIR:At2g40700 InParanoid:Q7XJN0 OMA:HRFHWIV
PhylomeDB:Q7XJN0 ProtClustDB:CLSN2683635 Genevestigator:Q7XJN0
GermOnline:AT2G40700 Uniprot:Q7XJN0
Length = 609
Score = 112 (44.5 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 47/180 (26%), Positives = 81/180 (45%)
Query: 237 AIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSE 294
A+V+ T E Q + + K + + GG KA E I +LIATP
Sbjct: 107 ALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGG-EKKAKEKARLRKGISILIATPGR 165
Query: 295 VLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 353
+L H+++ + ++R+V+ DEAD++ + G+G EI +I+ L N QG + +V
Sbjct: 166 LLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSG---QNEQGEEDDIV 222
Query: 354 TAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEV-FDLTESQDALKKKVVEAMDS 412
I ++ + L+ D + + L+ D + D T+ Q L + A DS
Sbjct: 223 PKGI-----QKQNLLLSATLNDKVNDLAKLSLD-DPVMIGLDNTKLQQNLSIESPAAPDS 276
Score = 107 (42.7 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 142 SFQELGLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
SF LGL ++ + E+MG P+ +Q IP +L+G+ V++ +T+AYL PL+
Sbjct: 30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89
Query: 201 ---QVYS-QLDEEH 210
Q +S ++D H
Sbjct: 90 HHLQGHSPKVDRSH 103
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 131 (51.2 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 33/112 (29%), Positives = 59/112 (52%)
Query: 225 EALL--PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN 282
E LL P + R ++L T E A Q M + ++ + + GG+S + E V
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 286
Query: 283 APIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
+ +++ATP ++ H+ + +V DD+ ++LDEAD L GF EI++++
Sbjct: 287 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELV 338
Score = 89 (36.4 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F EL L +++A E +G P+ IQ IP L G+ + +T A+ LP ++
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
>RGD|1311976 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311976
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0042645
EMBL:CH473972 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
IPI:IPI00870370 RefSeq:NP_001102368.1 UniGene:Rn.140812
Ensembl:ENSRNOT00000026817 GeneID:364995 KEGG:rno:364995
UCSC:RGD:1311976 NextBio:686447 Uniprot:D4A7Q5
Length = 540
Score = 170 (64.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 63/250 (25%), Positives = 114/250 (45%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKM--GLFVPSEIQCVGIPAVLNGKSVVLXX 185
++E + N +F +LGL+ ++ A++K + P+ +Q IP +L G+ ++
Sbjct: 113 QQEAPAMRNLSSRGNFVDLGLEPRVLLALQKAVPEIVQPTSVQSKTIPPLLRGRHILCAA 172
Query: 186 XXXXXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+TL+YLLPL Q ++L+ E L PR +VL + E
Sbjct: 173 ETGSGKTLSYLLPLFQ-----------------RLLKGPE-LDSRSSTAPRGLVLVPSRE 214
Query: 246 SADQGFHMAKFISHCARLDSSMENGGVSSKALE-DVSNAPIG-MLIATPSEVLQHIEDRN 303
A+Q +A+ + L GG+ L+ + P +L+ATP + + ++ +
Sbjct: 215 LAEQVQAVAQSLGRYLDLQVIELGGGLGMNRLKLQLGKWPSADVLVATPGALWKALKSQL 274
Query: 304 VSCDDIRYVVLDEADTLFDRGFGPEISKIL--NPLKDSALKSN---GQGFQTILVTAAIA 358
+S + ++VLDE DTL D F + IL +P+ +S + Q ++V A
Sbjct: 275 ISLHHLNFIVLDEVDTLLDESFVELVDYILGKSPIAESPAELEDPFNPKAQLVMVGATFP 334
Query: 359 EMLGEQLSSL 368
E L + LS +
Sbjct: 335 EGLNQLLSKV 344
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 171 (65.3 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 48/206 (23%), Positives = 100/206 (48%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++GSN + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 145 EATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 204
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T A+LLP++ Q+Y+ + + ++ + +P ++VL T E A
Sbjct: 205 GKTAAFLLPILSQIYADGPGD-------ALRAMKATNGRYGRRKQYPISLVLAPTRELAV 257
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ ++ +R+ + GG + + D+ +L+ATP ++ +E + D
Sbjct: 258 QIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 316
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 317 FCKYLVLDEADRMLDMGFEPQIRRIV 342
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 171 (65.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 53/206 (25%), Positives = 96/206 (46%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
++SG + E V++F L +I + P+ +Q IP V+NG+ ++
Sbjct: 175 EASGHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTGS 234
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
+T +L P++ Q Y G Q R+ +A +P +++L T E
Sbjct: 235 GKTGGFLFPILSQAYQNGPAAPPPSAAG--QFGRQRKA-------YPTSLILAPTRELVS 285
Query: 249 QGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q F A+ ++ + + + GG L + +L+ATP ++ IE +S
Sbjct: 286 QIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERG-CDLLVATPGRLVDLIERGRISLV 344
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+I+Y++LDEAD + D GF P+I +I+
Sbjct: 345 NIKYLILDEADRMLDMGFEPQIRRIV 370
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 171 (65.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 64/241 (26%), Positives = 108/241 (44%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP VL G+ ++ +
Sbjct: 253 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGK 312
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ GIT R + L P I++ T E +Q +
Sbjct: 313 TAAFLLPILA---------HMMRDGITAS--RFKEL-----QEPECIIVAPTRELINQIY 356
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + + GG ++ + +L ATP ++ I + ++
Sbjct: 357 LEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQVK 415
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE----MLGEQLS 366
Y+VLDEAD + D GFGPE+ K+++ + S Q QT+L +A E + GE L
Sbjct: 416 YLVLDEADRMLDMGFGPEMKKLISC---PGMPSKEQR-QTLLFSATFPEEIQRLAGEFLK 471
Query: 367 S 367
S
Sbjct: 472 S 472
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 128 (50.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 35/111 (31%), Positives = 56/111 (50%)
Query: 235 PRAIVLCTTEESADQ-GFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATP 292
P A+V+ T E Q F H R+ S + + +A + VS ++IATP
Sbjct: 490 PYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQ-VSKG-CEIIIATP 547
Query: 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 343
+ +E R + + Y+VLDEAD + D GF P+++ +L+ + S LKS
Sbjct: 548 GRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPSSFLKS 598
Score = 92 (37.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ ++QE L E+++A+ ++G PS IQ IP L G+ ++ +T A+++P+
Sbjct: 412 IRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPM 471
Query: 200 VQVY 203
+ +Y
Sbjct: 472 L-IY 474
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 115 (45.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 31/111 (27%), Positives = 58/111 (52%)
Query: 228 LPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG 286
L KP + +++ + T E A Q F +AK + + GG + +A D +
Sbjct: 154 LKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVN 213
Query: 287 MLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
+L+ATP +L H+++ + ++R +V+DEAD + + GF E+ +I+ L
Sbjct: 214 LLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKIL 264
Score = 102 (41.0 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 128 ER-EKSSGSNAEVVSS---FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVL 183
ER +KS NA S F +L L + KA+++MG +EIQ IP +L G+ V+
Sbjct: 72 ERVQKSVNLNASSTSDIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLG 131
Query: 184 XXXXXXXRTLAYLLPLVQV 202
+TLA+L+P +++
Sbjct: 132 AAKTGSGKTLAFLIPTIEM 150
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 171 (65.3 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 64/241 (26%), Positives = 108/241 (44%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP VL G+ ++ +
Sbjct: 264 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGK 323
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ GIT R + L P I++ T E +Q +
Sbjct: 324 TAAFLLPILA---------HMMRDGITAS--RFKEL-----QEPECIIVAPTRELINQIY 367
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + + GG ++ + +L ATP ++ I + ++
Sbjct: 368 LEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQVK 426
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE----MLGEQLS 366
Y+VLDEAD + D GFGPE+ K+++ + S Q QT+L +A E + GE L
Sbjct: 427 YLVLDEADRMLDMGFGPEMKKLISC---PGMPSKEQR-QTLLFSATFPEEIQRLAGEFLK 482
Query: 367 S 367
S
Sbjct: 483 S 483
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 171 (65.3 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 64/241 (26%), Positives = 108/241 (44%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP VL G+ ++ +
Sbjct: 264 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGK 323
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ GIT R + L P I++ T E +Q +
Sbjct: 324 TAAFLLPILA---------HMMRDGITAS--RFKEL-----QEPECIIVAPTRELINQIY 367
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + + GG ++ + +L ATP ++ I + ++
Sbjct: 368 LEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQVK 426
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE----MLGEQLS 366
Y+VLDEAD + D GFGPE+ K+++ + S Q QT+L +A E + GE L
Sbjct: 427 YLVLDEADRMLDMGFGPEMKKLISC---PGMPSKEQR-QTLLFSATFPEEIQRLAGEFLK 482
Query: 367 S 367
S
Sbjct: 483 S 483
>UNIPROTKB|G3V6M5 [details] [associations]
symbol:Ddx56 "Protein Ddx56" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CH473963
UniGene:Rn.39458 Ensembl:ENSRNOT00000006642 Uniprot:G3V6M5
Length = 546
Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 52/194 (26%), Positives = 94/194 (48%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q+
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 203 YSQLDEEHHLQLVG-ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H + G + + R L+P K + +A +S Q +A + +
Sbjct: 69 LL------HKKATGPVMEQAVRGLVLVPTKELARQA-------QSMIQ--QLASYCARDV 113
Query: 262 RLDS-SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADT 319
R+ + S S +A+ + P +++ TPS +L H++ +N+ D + +V+DEAD
Sbjct: 114 RVANVSAAEDSASQRAV--LMEKP-DVVVGTPSRILNHLQQKNLKLRDSLELLVVDEADL 170
Query: 320 LFDRGFGPEISKIL 333
LF GF E+ +L
Sbjct: 171 LFSFGFEDELKSLL 184
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 133 (51.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 34/112 (30%), Positives = 55/112 (49%)
Query: 228 LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGM 287
+ +K R+++L T E A Q S L + + GGV +A D + +
Sbjct: 69 IDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDI 128
Query: 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 339
L+ATP +L IE +++ + VLDEADT+ D GF ++ I++ L S
Sbjct: 129 LVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKS 180
Score = 77 (32.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+S F+ L +I V G P+ IQ IPA++NG ++ +T A+ LP+
Sbjct: 1 MSEFKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPI 60
Query: 200 VQVYSQ 205
+ + +
Sbjct: 61 INKFGR 66
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 122 (48.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 31/104 (29%), Positives = 52/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +R+ ++ GGV + D+ + + IATP
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRG-VEICIATPG 254
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
+L ++ + + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 255 RLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 298
Score = 93 (37.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP- 198
V++F+E G ++K V+++G P+ IQ P ++G+ +V +TL+Y LP
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 199 LVQVYSQ 205
+V + +Q
Sbjct: 181 IVHINAQ 187
>POMBASE|SPBC21H7.04 [details] [associations]
symbol:dbp7 "ATP-dependent RNA helicase Dbp7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC21H7.04
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K14806
HOGENOM:HOG000268799 OrthoDB:EOG4W6S47 PIR:T39930
RefSeq:NP_595929.1 ProteinModelPortal:O60173 STRING:O60173
EnsemblFungi:SPBC21H7.04.1 GeneID:2540518 KEGG:spo:SPBC21H7.04
NextBio:20801645 Uniprot:O60173
Length = 709
Score = 170 (64.9 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 58/214 (27%), Positives = 100/214 (46%)
Query: 135 SNAEV-VSSFQELGLKAEMIKAVE-KMGLFVPSEIQCVGIPAVLN--GKSVVLXXXXXXX 190
SNA + ++F + L ++ + KM + P+ IQ +PA+LN K +
Sbjct: 131 SNAPIKTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSG 190
Query: 191 RTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 250
+TLAYLLP+VQ +L + H + GI A+++ T E Q
Sbjct: 191 KTLAYLLPIVQRLIRLPKNLHTRTSGIY------------------AVIMAPTRELCQQI 232
Query: 251 FHMAKFISHCAR---LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN-VSC 306
+++A +++ + S GG K+ + + +LI TP + H+E+ +
Sbjct: 233 YNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDV 292
Query: 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSA 340
+R+VVLDE D L D GF ++KIL+ L+ +
Sbjct: 293 SQVRWVVLDEGDRLMDMGFEETLTKILSYLESQS 326
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 113 (44.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V+SF ELG+ A + + ++G P+ +Q IPAVL+G+ V+ +T A+ LPL
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 200 VQVYSQ 205
+Q S+
Sbjct: 68 LQRLSE 73
Score = 99 (39.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 30/105 (28%), Positives = 47/105 (44%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMEN----GGVSSKALEDVSNAPIGMLIAT 291
R +VL T E A Q F+S+ + + ++ GGVS A +L+AT
Sbjct: 85 RCLVLVPTRELAQQVAD--SFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVAT 142
Query: 292 PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
P +L + + + VLDEAD + GF E+ ++L L
Sbjct: 143 PGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAAL 187
Score = 43 (20.2 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 23/101 (22%), Positives = 49/101 (48%)
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLP-MKPMHP--RAIVLCTTEESADQGFHMA 254
PL + + Q ++E ++ IT + ALL + H +A++ + + + + H+A
Sbjct: 215 PL-EYHLQSEQESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCN---HLA 270
Query: 255 KFISHCARLDSSMENG----GVSSKALEDVSNAPIGMLIAT 291
+ +S + + + +G G ++ L+ N I +LIAT
Sbjct: 271 QKLSKRG-ISAEVFHGDKAQGARTRVLDGFKNGEISVLIAT 310
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 113 (44.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V+SF ELG+ A + + ++G P+ +Q IPAVL+G+ V+ +T A+ LPL
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 200 VQVYSQ 205
+Q S+
Sbjct: 68 LQRLSE 73
Score = 99 (39.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 30/105 (28%), Positives = 47/105 (44%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMEN----GGVSSKALEDVSNAPIGMLIAT 291
R +VL T E A Q F+S+ + + ++ GGVS A +L+AT
Sbjct: 85 RCLVLVPTRELAQQVAD--SFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRAGADVLVAT 142
Query: 292 PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
P +L + + + VLDEAD + GF E+ ++L L
Sbjct: 143 PGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAAL 187
Score = 43 (20.2 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 23/101 (22%), Positives = 49/101 (48%)
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLP-MKPMHP--RAIVLCTTEESADQGFHMA 254
PL + + Q ++E ++ IT + ALL + H +A++ + + + + H+A
Sbjct: 215 PL-EYHLQSEQESTIEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCN---HLA 270
Query: 255 KFISHCARLDSSMENG----GVSSKALEDVSNAPIGMLIAT 291
+ +S + + + +G G ++ L+ N I +LIAT
Sbjct: 271 QKLSKRG-ISAEVFHGDKAQGARTRVLDGFKNGEISVLIAT 310
>WB|WBGene00015232 [details] [associations]
symbol:B0511.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043652 "engulfment of apoptotic cell"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0040007 GO:GO:0002119 GO:GO:0003723 GO:GO:0043652
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 HSSP:P10081 EMBL:FO080219
PIR:T33113 RefSeq:NP_492779.1 ProteinModelPortal:O61815 SMR:O61815
DIP:DIP-27278N MINT:MINT-1068292 STRING:O61815 PaxDb:O61815
EnsemblMetazoa:B0511.6.1 EnsemblMetazoa:B0511.6.2 GeneID:172954
KEGG:cel:CELE_B0511.6 UCSC:B0511.6.1 CTD:172954 WormBase:B0511.6
InParanoid:O61815 NextBio:877669 Uniprot:O61815
Length = 544
Score = 110 (43.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 26/100 (26%), Positives = 53/100 (53%)
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297
I++ T E + Q + + + + L + GG + A +D + +L+ATP +L
Sbjct: 144 IIVSPTRELSMQTYGVLSELLEGSNLTYGLVMGGSNRSAEKDKLAKGVSILVATPGRLLD 203
Query: 298 HIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
H+++ N +++ +++DEAD + D GF E+ ++L L
Sbjct: 204 HLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHL 243
Score = 106 (42.4 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQVYSQLD 207
+ A ++KAV+ +G +EIQ I +L GK V+ +TLA+LLP +++ +L+
Sbjct: 75 VNANLLKAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLN 134
Query: 208 EEHH 211
+ H
Sbjct: 135 WKQH 138
Score = 38 (18.4 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 5 PSTEEQFIKYLEGAKEQTEQTEAEK----LRKRKKMKRTGKSLVNLSKVL 50
P EE + E K QTE++ K L K GK NL K +
Sbjct: 34 PMEEEDEEEVEEEQKHQTEESSETKVSEFLTKTTFASLEGKVNANLLKAV 83
>UNIPROTKB|A7YWQ8 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 HOGENOM:HOG000008689 HOVERGEN:HBG081424
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
EMBL:DAAA02046690 EMBL:BC134724 IPI:IPI00689474
RefSeq:NP_001098892.1 UniGene:Bt.3066 Ensembl:ENSBTAT00000005622
GeneID:539411 KEGG:bta:539411 InParanoid:A7YWQ8 NextBio:20877971
Uniprot:A7YWQ8
Length = 545
Score = 168 (64.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 69/275 (25%), Positives = 127/275 (46%)
Query: 127 SEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFV--PSEIQCVGIPAVLNGKSVVLX 184
++ E + N SF +LGL+ ++ A+++ V P+ +Q IP +L G+ ++
Sbjct: 112 AQHEAPALRNLSSKGSFADLGLEPRVLSALQEAAPEVVRPTTVQSSTIPPLLRGRHILCA 171
Query: 185 XXXXXXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTE 244
+TL Y+LPL+Q +L+G + + +P PR +VL +
Sbjct: 172 AETGSGKTLGYMLPLLQ-----------RLLGQPSLYT---SRIPA----PRGLVLVPSR 213
Query: 245 ESADQGFHMAKFISHCARLDSSMENGG--VSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
E A+Q +A+ + L GG +S L+ + P +L+ATP + + ++ +
Sbjct: 214 ELAEQVRAVAQPLGSSLGLRVQELGGGHGMSRVRLQLSKHPPAEVLVATPGALWKALKGQ 273
Query: 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK----DSALKS--NGQGFQTILVTAA 356
+S + ++VLDE DTL D F + IL + LK N + Q +LV A
Sbjct: 274 LISLAQLSFLVLDEVDTLLDESFLELVDYILEKSHIAEGPADLKDPFNPKA-QLVLVGAT 332
Query: 357 IAEMLGEQLSSL--MECLERDNAGKVTAMLLEMDQ 389
E +G+ LS + ++ L + K+ ++ + Q
Sbjct: 333 FPEGVGQLLSKVASLDSLTTITSSKLHCIMPHVKQ 367
>ASPGD|ASPL0000056064 [details] [associations]
symbol:AN0204 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:BN001308 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AACD01000005
InterPro:IPR025313 Pfam:PF13959 KO:K14806 RefSeq:XP_657808.1
ProteinModelPortal:Q5BGX6 STRING:Q5BGX6
EnsemblFungi:CADANIAT00002528 GeneID:2875981 KEGG:ani:AN0204.2
HOGENOM:HOG000268799 OMA:RAYATHI OrthoDB:EOG4W6S47 Uniprot:Q5BGX6
Length = 778
Score = 170 (64.9 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 68/249 (27%), Positives = 112/249 (44%)
Query: 130 EKSSGSNAEVVS---SFQELGLKAEMIK-AVEKMGLFVPSEIQCVGIPAVLNGKS-VVLX 184
E + +NA ++ +F LGL + + K+ L P+ IQ I +L ++ +
Sbjct: 137 EDAKPTNAPLIDGLDTFTNLGLSPTLAAHLLTKLELKAPTAIQKASITQLLKEETDAFIQ 196
Query: 185 XXXXXXRTLAYLLPLVQVYSQLDE-EHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTT 243
+TLAYLLPLVQ L ++ G T + RD L AI+L T
Sbjct: 197 AETGSGKTLAYLLPLVQRIMALSRAKNEGDAKGDTSV-HRDSGLF--------AIILAPT 247
Query: 244 EESADQGFHMAKFISHCAR-LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
E Q + + + CA + + GG K+ + + +L+ATP + H+E+
Sbjct: 248 RELCKQISVVLEGLLRCAHWIVAGTVIGGEKKKSEKARLRKGLNILVATPGRLADHLENT 307
Query: 303 N-VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQ----TILVTAAI 357
+ ++R++VLDE D L + GF E+ +I++ L S G TIL +A +
Sbjct: 308 QALDVSNVRWLVLDEGDRLMELGFEKELQEIISKLDARQRPSRIPGVPAKRATILCSATL 367
Query: 358 ---AEMLGE 363
+ LGE
Sbjct: 368 KMNVQKLGE 376
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 113 (44.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 36/124 (29%), Positives = 59/124 (47%)
Query: 220 MLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 278
M R + P+K P AI++ T E A Q F K + + GG K +
Sbjct: 476 MFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIK--D 533
Query: 279 DVSNAPIG--MLIATPS---EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
+++ G +++ TP +VL R + Y+VLDEAD +FD GF P++ +I+
Sbjct: 534 QIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRII 593
Query: 334 NPLK 337
N ++
Sbjct: 594 NNIR 597
Score = 108 (43.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V+S+ + GL A+ I + +G P+ IQ IPA+ +G+ V+ +T+A+LLP+
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPM 476
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 169 (64.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 52/207 (25%), Positives = 101/207 (48%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFV-PSEIQCVGIPAVLNGKSVVLXXXXX 188
+++G N + + F +L + E+I + + P+ +Q IP + + + ++
Sbjct: 197 EATGHNGPQPIDRFHDLEM-GEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTG 255
Query: 189 XXRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESA 247
+T A+LLP++ Q+Y+ E LQ + ++ + +P ++VL T E A
Sbjct: 256 SGKTAAFLLPVLSQIYTDGPGEA-LQAA---KNSAQENGKYGRRKQYPISLVLAPTRELA 311
Query: 248 DQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC 306
Q + A+ S+ + + + GG + + D+ +L+ATP +L +E +
Sbjct: 312 LQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLLDMMERGKIGL 370
Query: 307 DDIRYVVLDEADTLFDRGFGPEISKIL 333
D Y+VLDEAD + D GF P+I +I+
Sbjct: 371 DYCNYLVLDEADRMLDMGFEPQIRRIV 397
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 107 (42.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F+ELGL +++ +MGL P+ +Q IP +L G+ + +T A++LP+
Sbjct: 1 MAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPV 60
Query: 200 VQVYSQ 205
+QV S+
Sbjct: 61 LQVLSE 66
Score = 104 (41.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 45/180 (25%), Positives = 79/180 (43%)
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS--SKALEDVSNAPIGMLIATPSEV 295
+VL T E A Q + + L + GG+ ++ALE +S P ++IATP +
Sbjct: 74 LVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALE-LSRKP-HVVIATPGRL 131
Query: 296 LQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 354
H+ N S ++++VLDEAD L ++G + + L + ++ QT+L +
Sbjct: 132 ADHLRSSNTFSLKKLKFLVLDEADRLLEQGCA-DFTADLEVILEAVPARR----QTLLFS 186
Query: 355 AAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLH 414
A + + L E S M A + E+DQ + +DA +++ H
Sbjct: 187 ATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEH 246
>UNIPROTKB|D6RCM4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HGNC:HGNC:18700 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RCM4 SMR:D6RCM4 Ensembl:ENST00000506511
ArrayExpress:D6RCM4 Bgee:D6RCM4 Uniprot:D6RCM4
Length = 518
Score = 167 (63.8 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 59/229 (25%), Positives = 103/229 (44%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 259 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 318
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ GIT R + L P I++ T E +Q +
Sbjct: 319 TAAFLLPILA---------HMMHDGITAS--RFKEL-----QEPECIIVAPTRELVNQIY 362
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + + GG ++ + +L ATP ++ I + I+
Sbjct: 363 LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIK 421
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
Y+VLDEAD + D GFGPE+ K+++ + S Q QT++ +A E
Sbjct: 422 YLVLDEADRMLDMGFGPEMKKLISC---PGMPSKEQR-QTLMFSATFPE 466
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 168 (64.2 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 52/192 (27%), Positives = 83/192 (43%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF LGL ++ A+E G P+ +Q IPAVL G+ +++ +T + LP+++
Sbjct: 2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L H + R P PR +VL T E A Q K +
Sbjct: 62 ---RLFPNGHPD-----KSQRHG-------PRQPRVLVLTPTRELAAQVHDSFKLYARDL 106
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ S+ GGV + +L+A P +L +V + +VLDEAD +
Sbjct: 107 KFVSACIFGGVGMNPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRML 166
Query: 322 DRGFGPEISKIL 333
D GF ++ K+L
Sbjct: 167 DMGFVHDVKKVL 178
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 129 (50.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 32/104 (30%), Positives = 52/104 (50%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A +R+ S+ GG + D+ + + IATP
Sbjct: 170 PICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERG-VEICIATPG 228
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 229 RLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 272
Score = 85 (35.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP- 198
+ F E ++ + K P+ IQ G P L+GK +V +TL+YLLP
Sbjct: 95 IVKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPA 154
Query: 199 LVQVYSQLDEEH 210
+V + Q EH
Sbjct: 155 IVHINHQPFLEH 166
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 164 (62.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 52/194 (26%), Positives = 94/194 (48%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q+
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 203 YSQLDEEHHLQLVG-ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H + G + + R L+P K + +A +S Q +A + +
Sbjct: 69 LL------HRKATGPVVEQAVRGLVLVPTKELARQA-------QSMIQ--QLATYCARDV 113
Query: 262 RLDS-SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADT 319
R+ + S VS +A+ + P +++ TPS +L H++ ++ D + +V+DEAD
Sbjct: 114 RVANVSAAEDSVSQRAV--LMEKP-DVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADL 170
Query: 320 LFDRGFGPEISKIL 333
LF GF E+ +L
Sbjct: 171 LFSFGFEEELKSLL 184
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 128 (50.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 33/104 (31%), Positives = 54/104 (51%)
Query: 235 PRAIVLCTTEESADQGFHMA-KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293
P A+VL T E A Q +A +F S+ ++ + G + D+ + ++IATP
Sbjct: 231 PIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERG-VEIVIATPG 289
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E S Y+VLDEAD + D GF P+I KI+ ++
Sbjct: 290 RLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIR 333
Score = 89 (36.4 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
F+E G ++ + K G P+ IQ G P ++G+ +V +TLAY+LP V
Sbjct: 159 FEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAV 216
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 168 (64.2 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 60/229 (26%), Positives = 103/229 (44%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP VL G+ ++ +
Sbjct: 252 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGK 311
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ GIT R + L P I++ T E +Q +
Sbjct: 312 TAAFLLPILA---------HMMRDGITAS--RFKEL-----QEPECIIVAPTRELINQIY 355
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + + GG ++ + +L ATP ++ I + ++
Sbjct: 356 LEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQG-CNILCATPGRLMDIIGKEKIGLKQVK 414
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
Y+VLDEAD + D GFGPE+ K+++ + S Q QT+L +A E
Sbjct: 415 YLVLDEADRMLDMGFGPEMKKLISC---PGMPSKEQR-QTLLFSATFPE 459
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 141 (54.7 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 41/120 (34%), Positives = 65/120 (54%)
Query: 237 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL 296
AIVL T E A Q F + K + + + GG + + +D NA + +LIATP +L
Sbjct: 216 AIVLSPTRELAIQIFDVLKAVGKYHTFSAGLIIGGRNVQQEKDKINA-MNILIATPGRLL 274
Query: 297 QHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
QH+++ C +++ +VLDEAD + D GF SK LN + ++ + QT+L +A
Sbjct: 275 QHMDETYGFDCSNLKILVLDEADRILDLGF----SKCLNSIVENLPRER----QTLLFSA 326
Score = 75 (31.5 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 16/74 (21%), Positives = 38/74 (51%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
E+EK + + F++L + +KA+ + ++IQ +P L G+ ++
Sbjct: 128 EKEKEYKIDYPSATDFKDLPISQLTLKALTESKFLKLTDIQRASLPHTLCGRDILGAAKT 187
Query: 188 XXXRTLAYLLPLVQ 201
+TL+++LP+++
Sbjct: 188 GSGKTLSFILPILE 201
>WB|WBGene00018890 [details] [associations]
symbol:F55F8.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003676 GO:GO:0040035 GO:GO:0040002 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K14805 HOGENOM:HOG000290702 GeneTree:ENSGT00550000074847
OMA:VEEGYFA EMBL:FO081477 PIR:T29584 RefSeq:NP_491652.1
ProteinModelPortal:P91340 SMR:P91340 STRING:P91340 PaxDb:P91340
PRIDE:P91340 EnsemblMetazoa:F55F8.2a GeneID:172223
KEGG:cel:CELE_F55F8.2 UCSC:F55F8.2a CTD:172223 WormBase:F55F8.2a
InParanoid:P91340 NextBio:874573 ArrayExpress:P91340 Uniprot:P91340
Length = 746
Score = 168 (64.2 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 85/404 (21%), Positives = 166/404 (41%)
Query: 8 EEQFIKYLEGAKEQT--EQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQINSSPVIRPL 65
++ +++L G+ E+ E E E +K K K K + N + K + + + L
Sbjct: 23 DDNMLQFL-GSFEEVLPEGVEVET-KKGMKKKNKPKKVENTERPEEDAKCVEERRLAKKL 80
Query: 66 SXXXXXXXXXXQ--QRVPSKPEKDSFILENFKLRKLNGSAKTXXXXXXXXXXXXXXXXXX 123
Q +R+ + +K++ E+ +K + +T
Sbjct: 81 RRKEQMAANRKQKKERLAKRKQKEA---ES-SAKKSENATETTTEKPKEQKKRKGGENGD 136
Query: 124 XIASEREKSSGSNAEVVSSFQELG-LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVV 182
++ K S +S++++ L E+++A+E+MG P+EIQ +PA + + V
Sbjct: 137 TGKPKKSKKEASKKTDISAWKQFYFLPNEVLEAIEQMGFSEPTEIQSAVLPAAVRDRQDV 196
Query: 183 LXXXXXXX-RTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241
L +TLA+ +PLV L+ Q T++ PRA+++
Sbjct: 197 LGAAETGSGKTLAFGIPLVA--RLLESSDDSQETESTEV------------RGPRALIVA 242
Query: 242 TTEESADQGF-HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV---LQ 297
T E Q H+ IS + +S+ G K +S +++ATP + +Q
Sbjct: 243 PTRELVIQIMKHINALISTTQLIATSIVGGLAQVKQERIISQQRPDIVVATPGRLWAMMQ 302
Query: 298 HIEDRNVSCD--DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG--FQTILV 353
E + D++ +V+DE D + + G+ E++ ILN + + + K Q F L
Sbjct: 303 EAETGEFLAEWKDLKCLVVDETDRMVEEGYFAELTHILNKIHEESEKEKLQTLVFSATLT 362
Query: 354 TAAIAEMLGEQLSSLMECLERDNAGKVTAML-LEMDQAEVFDLT 396
A ++ E+ E + ++ + L ++ +V DLT
Sbjct: 363 FAKAQDVAEEEKKKAKELSSQQKIQRLIKLTGLRENKHKVIDLT 406
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 130 (50.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 38/128 (29%), Positives = 60/128 (46%)
Query: 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMEN 269
L + ML + PR ++L T E A Q + M +S+ A L + EN
Sbjct: 57 LAFVLPMLHKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGEN 116
Query: 270 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 329
KAL + P ++ATP + H++ R++ + + +VLDEAD + D GF E+
Sbjct: 117 FNDQVKAL---ARGP-RFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKEL 172
Query: 330 SKILNPLK 337
+I N K
Sbjct: 173 RRIHNAAK 180
Score = 79 (32.9 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E F++LGL ++K + +EIQ IP + G+ ++ +TLA++L
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 198 PLV 200
P++
Sbjct: 62 PML 64
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 130 (50.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 38/128 (29%), Positives = 60/128 (46%)
Query: 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMEN 269
L + ML + PR ++L T E A Q + M +S+ A L + EN
Sbjct: 57 LAFVLPMLHKSLKTKAFSAKDPRGLILVPTRELAKQVYGELRSMLGGLSYTATLITGGEN 116
Query: 270 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 329
KAL + P ++ATP + H++ R++ + + +VLDEAD + D GF E+
Sbjct: 117 FNDQVKAL---ARGP-RFIVATPGRLADHLDHRSLFLEGLETLVLDEADRMLDLGFAKEL 172
Query: 330 SKILNPLK 337
+I N K
Sbjct: 173 RRIHNAAK 180
Score = 79 (32.9 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E F++LGL ++K + +EIQ IP + G+ ++ +TLA++L
Sbjct: 2 ESTLQFKDLGLDNRLLKNLAHYNFKQATEIQQQAIPLTIAGRDLLASSKTGSGKTLAFVL 61
Query: 198 PLV 200
P++
Sbjct: 62 PML 64
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 167 (63.8 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 59/229 (25%), Positives = 103/229 (44%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 259 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 318
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ GIT R + L P I++ T E +Q +
Sbjct: 319 TAAFLLPILA---------HMMHDGITAS--RFKEL-----QEPECIIVAPTRELVNQIY 362
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + + GG ++ + +L ATP ++ I + I+
Sbjct: 363 LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIK 421
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
Y+VLDEAD + D GFGPE+ K+++ + S Q QT++ +A E
Sbjct: 422 YLVLDEADRMLDMGFGPEMKKLISC---PGMPSKEQR-QTLMFSATFPE 466
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 107 (42.7 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 21/66 (31%), Positives = 40/66 (60%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+++F+ELGL +++ +MGL P+ +Q IP +L G+ + +T A++LP+
Sbjct: 4 MAAFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPV 63
Query: 200 VQVYSQ 205
+QV S+
Sbjct: 64 LQVLSE 69
Score = 104 (41.7 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 45/180 (25%), Positives = 79/180 (43%)
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS--SKALEDVSNAPIGMLIATPSEV 295
+VL T E A Q + + L + GG+ ++ALE +S P ++IATP +
Sbjct: 77 LVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALE-LSRKP-HVVIATPGRL 134
Query: 296 LQHIEDRNV-SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 354
H+ N S ++++VLDEAD L ++G + + L + ++ QT+L +
Sbjct: 135 ADHLRSSNTFSLKKLKFLVLDEADRLLEQGCA-DFTADLEVILEAVPARR----QTLLFS 189
Query: 355 AAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLH 414
A + + L E S M A + E+DQ + +DA +++ H
Sbjct: 190 ATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQTFQDEH 249
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 167 (63.8 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 59/229 (25%), Positives = 103/229 (44%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 279 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 338
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ GIT R + L P I++ T E +Q +
Sbjct: 339 TAAFLLPILA---------HMMHDGITAS--RFKEL-----QEPECIIVAPTRELVNQIY 382
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + + GG ++ + +L ATP ++ I + I+
Sbjct: 383 LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIK 441
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
Y+VLDEAD + D GFGPE+ K+++ + S Q QT++ +A E
Sbjct: 442 YLVLDEADRMLDMGFGPEMKKLISC---PGMPSKEQR-QTLMFSATFPE 486
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A RL S+ GG + D+ + + IATP
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 226
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 83 (34.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 146 LSYLLPAI 153
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A RL S+ GG + D+ + + IATP
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 226
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 83 (34.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 146 LSYLLPAI 153
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A RL S+ GG + D+ + + IATP
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 226
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 83 (34.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 146 LSYLLPAI 153
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A RL S+ GG + D+ + + IATP
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 226
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 83 (34.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 146 LSYLLPAI 153
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A RL S+ GG + D+ + + IATP
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 226
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 83 (34.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 146 LSYLLPAI 153
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A RL S+ GG + D+ + + IATP
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 226
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 83 (34.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 146 LSYLLPAI 153
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 129 (50.5 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A RL S+ GG + D+ + + IATP
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 226
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 83 (34.3 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 146 LSYLLPAI 153
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 166 (63.5 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 49/206 (23%), Positives = 101/206 (49%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + +F ++ + ++ +E P+ +Q IP + + ++
Sbjct: 162 EATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 221
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESAD 248
T A+LLP++ Q+Y+ E + M ++ + +P ++VL T E A
Sbjct: 222 GCTAAFLLPILSQIYTDGPGE------ALKAM--KENGRYGRRKQYPISLVLAPTRELAV 273
Query: 249 QGFHMAKFISHCARLDSSMENGGVSS-KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + A+ S+ +R+ + GG + + + D+ +L+ATP ++ +E + D
Sbjct: 274 QIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERG-CHLLVATPGRLVDMMERGKIGLD 332
Query: 308 DIRYVVLDEADTLFDRGFGPEISKIL 333
+Y+VLDEAD + D GF P+I +I+
Sbjct: 333 FCKYLVLDEADRMLDMGFEPQIRRIV 358
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 165 (63.1 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 68/291 (23%), Positives = 129/291 (44%)
Query: 132 SSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFV-PSEIQCVGIPAVLNGKSVVLXXXXXX 189
+SG + E ++ F L +++ + K+ F P+ +Q +P V NG+ ++
Sbjct: 132 ASGKDVPEPITEFTSPPLDGLLLENI-KLARFTKPTPVQKYSVPIVANGRDLMACAQTGS 190
Query: 190 XRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
+T +L P+ L E G + + K +P A+++ T E A Q
Sbjct: 191 GKTGGFLFPV------LSESFK---TGPSPQPESQGSFYQRKA-YPTAVIMAPTRELATQ 240
Query: 250 GFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD 308
F AK ++ + + + + GG L ++ +L+ATP + +E +S +
Sbjct: 241 IFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERG-CDLLVATPGRLNDLLERGKISLAN 299
Query: 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSL 368
++Y+VLDEAD + D GF P+I I+ +D + G+ QT++ +A +
Sbjct: 300 VKYLVLDEADRMLDMGFEPQIRHIV---EDCDMTPVGER-QTLMFSATFPADIQHLARDF 355
Query: 369 MECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAPG 419
+ + G+V + + Q ++ E+QD KK + +D L S G
Sbjct: 356 LSDYIFLSVGRVGSTSENITQKVLY--VENQD--KKSAL--LDLLSASTDG 400
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 129 (50.5 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A RL S+ GG + D+ + + IATP
Sbjct: 225 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPG 283
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 284 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 327
Score = 83 (34.3 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 143 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 202
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 203 LSYLLPAI 210
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 127 (49.8 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 32/107 (29%), Positives = 57/107 (53%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPS 293
P A++L T E A Q + A + L + GGV S+ + D+ +++ TP
Sbjct: 378 PIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQIADLKRGA-EIVVCTPG 436
Query: 294 EVLQHIEDRNVSCDDIR---YVVLDEADTLFDRGFGPEISKILNPLK 337
++ + + ++R Y+VLDEAD +FD+GF P+I K++N ++
Sbjct: 437 RMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNIR 483
Score = 93 (37.8 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 16/60 (26%), Positives = 35/60 (58%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ ++ + G+ +M+ ++K P+ IQ IP++++G+ V+ +TLA+LLP+
Sbjct: 303 IKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLLPM 362
Score = 37 (18.1 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 17 GAKEQTEQTEAEKLRKRKKMKRTGK 41
G++E E + ++ R+R++ + T +
Sbjct: 29 GSREHREHRDRDRDRERRRERDTDR 53
Score = 37 (18.1 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 19 KEQTEQTEAEKLRKRKKMKRTGKSLVNLSK 48
+ + T+ EK R R+K + K SK
Sbjct: 45 RRRERDTDREKTRDREKQRDAEKKKEKESK 74
>MGI|MGI:1919236 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919236 GO:GO:0005739
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 GO:GO:0042645
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:AK010396 EMBL:AK163480 EMBL:BC120556 EMBL:BC120582
IPI:IPI00109544 RefSeq:NP_082314.2 UniGene:Mm.307515
ProteinModelPortal:Q9CWT6 SMR:Q9CWT6 PhosphoSite:Q9CWT6
PRIDE:Q9CWT6 Ensembl:ENSMUST00000058579 GeneID:71986 KEGG:mmu:71986
GeneTree:ENSGT00670000098028 InParanoid:Q0VBM0 OMA:LCSKGWK
NextBio:335138 Bgee:Q9CWT6 CleanEx:MM_DDX28 Genevestigator:Q9CWT6
GermOnline:ENSMUSG00000045538 Uniprot:Q9CWT6
Length = 540
Score = 164 (62.8 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 64/250 (25%), Positives = 114/250 (45%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKM--GLFVPSEIQCVGIPAVLNGKSVVLXX 185
++E + N SF +LGL+ ++ A+++ + P+ +Q IP +L G+ ++
Sbjct: 113 QQEAPALRNLSSRGSFVDLGLEPRVLLALQEAVPEVVQPTSVQSKTIPPLLRGRHLLCAA 172
Query: 186 XXXXXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+TL+YLLPL Q ++LR + L PR +VL + E
Sbjct: 173 ETGSGKTLSYLLPLFQ-----------------RLLRGSD-LDSRSFTAPRGLVLVPSRE 214
Query: 246 SADQGFHMAKFISHCARLDSSMENGGVSSKALE-DVSNAPIG-MLIATPSEVLQHIEDRN 303
A+Q +A+ + L GG+ L+ + P +L+ATP + + ++ +
Sbjct: 215 LAEQVQAVAQSLGGYLGLQVIELGGGLGMSRLKLQLYRRPAADVLVATPGALWKALKSQL 274
Query: 304 VSCDDIRYVVLDEADTLFDRGFGPEISKIL--NPLKDSALKSN---GQGFQTILVTAAIA 358
+S + ++VLDE DTL D F + IL +P+ +S + Q +LV A
Sbjct: 275 ISLQHLNFIVLDEVDTLLDESFLELVDYILEKSPIAESPAELEDPFNPKAQLVLVGATFP 334
Query: 359 EMLGEQLSSL 368
E L + LS +
Sbjct: 335 EGLNQLLSKV 344
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 164 (62.8 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 52/194 (26%), Positives = 94/194 (48%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q+
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 203 YSQLDEEHHLQLVG-ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H + G + + R L+P K + +A +S Q +A + +
Sbjct: 69 LL------HRKATGPVVEQAVRGLVLVPTKELARQA-------QSMIQ--QLATYCARDV 113
Query: 262 RLDS-SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADT 319
R+ + S VS +A+ + P +++ TPS +L H++ ++ D + +V+DEAD
Sbjct: 114 RVANVSAAEDSVSQRAV--LMEKP-DVVVGTPSRILSHLQQDSLKLRDSLELLVVDEADL 170
Query: 320 LFDRGFGPEISKIL 333
LF GF E+ +L
Sbjct: 171 LFSFGFEEELKSLL 184
>DICTYBASE|DDB_G0269966 [details] [associations]
symbol:ddx1 "SPla/RYanodine receptor SPRY
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA;ISS] [GO:0033677 "DNA/RNA helicase activity"
evidence=ISS] [GO:0032508 "DNA duplex unwinding" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004518 "nuclease activity" evidence=IEA;ISS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003712
"transcription cofactor activity" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR003877
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00622
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0269966 GO:GO:0005524 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003682
InterPro:IPR008985 SUPFAM:SSF49899 GO:GO:0004527 GO:GO:0006302
GO:GO:0003712 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR001870 InterPro:IPR018355 SMART:SM00449 PROSITE:PS50188
GO:GO:0004518 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0032508 GO:GO:0008143
GO:GO:0033677 KO:K13177 OMA:TLNNVKQ RefSeq:XP_646435.1
ProteinModelPortal:Q55CP6 STRING:Q55CP6 EnsemblProtists:DDB0233650
GeneID:8617394 KEGG:ddi:DDB_G0269966 ProtClustDB:CLSZ2431424
Uniprot:Q55CP6
Length = 765
Score = 129 (50.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 26/86 (30%), Positives = 50/86 (58%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+S+F++LG+ E+IKA+E++ +P+ IQ IP +L G V+ +T A+ LP+
Sbjct: 1 MSAFEDLGVLPEIIKAIEELDWLLPTPIQTEAIPLILGGGDVLAAAETGSGKTGAFALPI 60
Query: 200 VQV-YSQLDEEHHLQLVGITQMLRRD 224
+Q+ Y L+++ + ++ T D
Sbjct: 61 LQITYETLNKKAEIPIIAPTNTSGED 86
Score = 84 (34.6 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 24/96 (25%), Positives = 47/96 (48%)
Query: 231 KPMHPRAIVLCTTEESADQGF----HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG 286
+P ++++ T E ADQ + + +K++ ++ S+ GG S + I
Sbjct: 315 QPRKTLSLIIEPTRELADQAYSAILNFSKYLDS-PKIQVSLCIGGEKSNGGRNKIEGDI- 372
Query: 287 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+I TP + +++ ++ I++ VLDEAD L D
Sbjct: 373 -IIGTPGRLESLVKEGSIDLSSIKFFVLDEADQLID 407
>WB|WBGene00001601 [details] [associations]
symbol:glh-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0008432 "JUN kinase binding" evidence=IPI]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0042127 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0007276
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:AF079508 EMBL:FO081191 PIR:T32759 PIR:T43326
RefSeq:NP_491207.3 ProteinModelPortal:O76743 SMR:O76743
IntAct:O76743 STRING:O76743 PaxDb:O76743 PRIDE:O76743
EnsemblMetazoa:T12F5.3.1 EnsemblMetazoa:T12F5.3.2 GeneID:171941
KEGG:cel:CELE_T12F5.3 UCSC:T12F5.3.1 CTD:171941 WormBase:T12F5.3
InParanoid:O76743 NextBio:873335 Uniprot:O76743
Length = 1156
Score = 168 (64.2 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 70/259 (27%), Positives = 122/259 (47%)
Query: 156 VEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQVYSQLDEEHHLQLV 215
+++M + P+ IQ +++G VV +TLA+L+P V +L EE
Sbjct: 751 LKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFV---IKLMEE------ 801
Query: 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK 275
+D + KP PR +++ T E +Q F A+ +++ L + GG S
Sbjct: 802 -----FEKDRDVTDEKPS-PRLLIVAPTRELVNQTFTTARQLTYETGLKCGLAFGGYSRN 855
Query: 276 A-LEDV-SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-FGPEISKI 332
A ++ + S + + +L+AT + + VS ++Y+VLDEAD + D FG E+SKI
Sbjct: 856 ANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSNDFGEEVSKI 915
Query: 333 LNPLKDSALKSNGQGFQ-TILVTAAIAEML-GEQLSSLME----CLERDNAGKVTAMLLE 386
+ S G+ Q T+L +A+ +E L + L ++ L+ D G +
Sbjct: 916 IG--------SPGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFGTANE---K 964
Query: 387 MDQAEV-FDLTESQDALKK 404
+DQ + TE +DA+ K
Sbjct: 965 IDQKILPVPRTEKRDAIYK 983
>SGD|S000001732 [details] [associations]
symbol:DBP7 "Putative ATP-dependent RNA helicase of the
DEAD-box family" species:4932 "Saccharomyces cerevisiae"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001732
GO:GO:0005524 GO:GO:0005730 EMBL:BK006944 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HOGENOM:HOG000268799
OMA:RAYATHI OrthoDB:EOG4W6S47 EMBL:Z28249 PIR:S38093
RefSeq:NP_012949.1 ProteinModelPortal:P36120 SMR:P36120
DIP:DIP-1833N IntAct:P36120 MINT:MINT-395227 STRING:P36120
PaxDb:P36120 PeptideAtlas:P36120 EnsemblFungi:YKR024C GeneID:853894
KEGG:sce:YKR024C CYGD:YKR024c GeneTree:ENSGT00550000075041
NextBio:975207 Genevestigator:P36120 GermOnline:YKR024C
Uniprot:P36120
Length = 742
Score = 170 (64.9 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 63/229 (27%), Positives = 102/229 (44%)
Query: 125 IASEREKSSGSNAEVVSS-FQELGLKAEMIKAVE-KMGLFVPSEIQCVGIPAVLN--GKS 180
I E + SNA + F LG+ + ++ +E KM + P+ IQ IP ++ GK+
Sbjct: 126 IHDENVAINPSNAPLKGDQFASLGVSSLLVSHLEQKMRIKKPTSIQKQAIPQIIGNAGKN 185
Query: 181 -VVLXXXXXXXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239
+ +TL+YLLP++ +D T + R A A+V
Sbjct: 186 DFFIHAQTGSGKTLSYLLPIISTILNMD----------THVDRTSGAF---------ALV 226
Query: 240 LCTTEESADQGFHMAK-FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298
+ T E A Q +H+ +S C L + GG K+ + +I TP VL H
Sbjct: 227 IAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKGCNFIIGTPGRVLDH 286
Query: 299 IEDRNVSCDDI----RYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 343
+++ V + + RY+VLDE D L + GF IS+I+ + D + S
Sbjct: 287 LQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEIIKIVHDIPINS 335
Score = 39 (18.8 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 1 MLLSPSTEEQFIKYLEGAKEQTEQTEAE-KLRKRKKMKRTGKSL 43
MLL+ +T E K+ + T K R+R KMK GK++
Sbjct: 7 MLLNFTTNEDTAG--SSYKQAAKVTGGRWKDRRRMKMKLEGKTV 48
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 134 (52.2 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 57/188 (30%), Positives = 84/188 (44%)
Query: 235 PRAIVLCTTEESADQGFHMAK-FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q AK +S L +++ GG+ + I ++IATP
Sbjct: 273 PSGLVLTPTRELAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRLRQRIQVIIATPG 332
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 353
+L I+ R+V I+ VV+DEADT+ GF ++ +L L QT+L
Sbjct: 333 RLLDIIKQRSVELGSIKIVVVDEADTMLKMGFQQQVLDVLEQLPHDC--------QTVLA 384
Query: 354 TAAIAEMLGEQLSSLMEC-LERDNAGKVTA--MLLEMDQAEVFDLTESQDALKKKVVEAM 410
+A I + EQL+ C L RD +TA L L + A KKK+ E +
Sbjct: 385 SATIPASV-EQLA----CQLLRDPVA-ITAGERNLPCPSVRQIVLWVEEPAKKKKLFEIL 438
Query: 411 DSLHLSAP 418
+ L P
Sbjct: 439 NDKKLFKP 446
Score = 76 (31.8 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ F+ G + + ++ G VP+ IQ IP L G+ V+ +T A+LLP+
Sbjct: 203 IVDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPV 262
Query: 200 V 200
+
Sbjct: 263 I 263
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 130 (50.8 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 33/101 (32%), Positives = 48/101 (47%)
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA+V+ T E A+Q + RL S GGV A +++A P +
Sbjct: 72 RALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAEVVVACPGRL 131
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
L HI + + +VLDEAD +FD GF P+I ++L L
Sbjct: 132 LDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHL 172
Score = 76 (31.8 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F+ G + + G P+ IQ IPAV+ G+ V+ +T A+ LP++
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHR 62
Query: 203 YSQ 205
Q
Sbjct: 63 LQQ 65
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 165 (63.1 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 57/229 (24%), Positives = 102/229 (44%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 280 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 339
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ GIT ++ P I++ T E +Q +
Sbjct: 340 TAAFLLPILA---------HMMHDGITASCFKEL-------QEPECIIVAPTRELVNQIY 383
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + + GG ++ + +L ATP ++ I + I+
Sbjct: 384 LEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQG-CNILCATPGRLMDIIGKEKIGLKQIK 442
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
Y+VLDEAD + D GFGPE+ K+++ + S Q QT++ +A E
Sbjct: 443 YLVLDEADRMLDMGFGPEMKKLISC---PGMPSKEQR-QTLMFSATFPE 487
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 165 (63.1 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 62/241 (25%), Positives = 108/241 (44%)
Query: 133 SGSNAE-VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXR 191
SG +A + +F+E L + + K G + +Q IP +L G+ ++ +
Sbjct: 280 SGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGK 339
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP++ H+ GIT R + L P I++ T E +Q +
Sbjct: 340 TAAFLLPILA---------HMMHDGITAS--RFKEL-----QEPECIIVAPTRELINQIY 383
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
A+ S + + + GG ++ + +L ATP ++ I + ++
Sbjct: 384 LEARKFSFGTCVRAVVIYGGTQLGYSIRQIVQG-CNILCATPGRLMDIIGKEKIGLRQVK 442
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE----MLGEQLS 366
Y+VLDEAD + D GFGPE+ K+++ + S Q QT++ +A E + GE L
Sbjct: 443 YLVLDEADRMLDMGFGPEMKKLISC---PGMPSKEQR-QTLMFSATFPEEIQRLAGEFLK 498
Query: 367 S 367
S
Sbjct: 499 S 499
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 110 (43.8 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 47/191 (24%), Positives = 81/191 (42%)
Query: 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG-VSSKALEDVSNAPIGMLIATP 292
+P A+VL T E Q AK + +++ GG S L + + ++I TP
Sbjct: 186 NPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQG-VELIIGTP 244
Query: 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 352
V+ + + D+I VLDE D + RGF ++ +I L Q +L
Sbjct: 245 GRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQALSQP---------QVLL 295
Query: 353 VTAAIA---EMLGEQLSSLMECLERDNAGK----VTAMLLEMD----QAEVFDLTESQDA 401
+A I+ E +G L+ + + N K V + + +D + ++FD+ SQ+
Sbjct: 296 FSATISREVEKVGGSLAKEIILVSIGNPNKPNKAVNQLAIWVDAKQKKQKLFDILRSQNH 355
Query: 402 LKKKVVEAMDS 412
K V + S
Sbjct: 356 FKPPAVVYVSS 366
Score = 99 (39.9 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V +F GL +++ +E G P+ IQ IPA L GKS++ +T ++L+P+
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 200 VQVYSQLDEEH 210
+ + EH
Sbjct: 169 ISRCTTYHSEH 179
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 126 (49.4 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 51/185 (27%), Positives = 79/185 (42%)
Query: 235 PRAIVLCTTEESADQGFHMAK-FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293
P A++L T E A Q AK +S R+ + + GG+ + ++IATP
Sbjct: 272 PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPG 331
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 353
+L I+ +VS I+ VV+DEADT+ GF ++ +L QTILV
Sbjct: 332 RLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDC--------QTILV 383
Query: 354 TAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
+A I + + + L+ R G + Q L A KKK+ E ++
Sbjct: 384 SATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQ---IILWVEDPAKKKKLFEILNDQ 440
Query: 414 HLSAP 418
L P
Sbjct: 441 KLFKP 445
Score = 84 (34.6 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
A + F+ G + + ++K G VP+ IQ IP L G+ ++ +T A+L
Sbjct: 199 ARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFL 258
Query: 197 LP-LVQVYSQ 205
LP +++ +S+
Sbjct: 259 LPVIIRAFSE 268
>UNIPROTKB|F1SSH6 [details] [associations]
symbol:DDX56 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CU856650
Ensembl:ENSSSCT00000018227 Uniprot:F1SSH6
Length = 545
Score = 163 (62.4 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 56/195 (28%), Positives = 93/195 (47%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F+ +GL +++AV +G P+ IQ IP L GK L +T AY +P++Q+
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQ-EKIPLALEGKDSWLGAARGQGKTAAYAIPMLQL 67
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-HCA 261
+L R +A+ P R +VL T++ A Q M + ++ +CA
Sbjct: 68 -----------------LLHR-KAIGPAVEQAVRGLVLVPTKDLARQAQSMIQQLAAYCA 109
Query: 262 RLDSSMENGGVS--SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEAD 318
R D + N + S + V +++ TPS +L H++ N+ D + +V+DEAD
Sbjct: 110 R-DIRVANVSAAEDSASQRAVLMEKPDIVVGTPSRILNHLQQDNLKLRDSLELLVVDEAD 168
Query: 319 TLFDRGFGPEISKIL 333
LF GF E+ +L
Sbjct: 169 LLFSFGFEEELKSLL 183
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 119 (46.9 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
AE ++F +LGLKA +++A+ +G PS IQ IP +LNG+ V+ +T A+
Sbjct: 2 AEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFS 61
Query: 197 LPLVQVYSQLDEE 209
LPL+Q LD E
Sbjct: 62 LPLLQ---NLDPE 71
Score = 91 (37.1 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 33/129 (25%), Positives = 56/129 (43%)
Query: 235 PRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATP 292
P+ +VL T E A Q M F H ++ GG L + P +++ TP
Sbjct: 75 PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP-QIVVGTP 133
Query: 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 352
+L H++ + + +VLDEAD + GF ++ I+ + + G QT L
Sbjct: 134 GRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE--------GHQTAL 185
Query: 353 VTAAIAEML 361
+A + E +
Sbjct: 186 FSATMPEAI 194
>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
symbol:PFE0215w "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 143 (55.4 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
P +VL T E + Q + K IS + GG S E+ I +L TP
Sbjct: 258 PSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGR 317
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
++ HIE +N+S +I+YVVLDEAD + + GF +I +IL+
Sbjct: 318 IIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILS 357
Score = 67 (28.6 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 130 EKSSGSNAEVVSSFQELG-LKAEMIKAVE-KMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
+ S N + F +L + +++ +E K G+ ++IQ + GK ++
Sbjct: 130 DSESHLNDQGKCKFSDLSEINKNIVEFLENKKGIKYMTKIQSQSFKPIYEGKDIIGRSET 189
Query: 188 XXXRTLAYLLPLVQ 201
+TLA+ LPLV+
Sbjct: 190 GSGKTLAFALPLVE 203
>UNIPROTKB|Q8I457 [details] [associations]
symbol:PFE0215w "ATP-dependent helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 143 (55.4 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
P +VL T E + Q + K IS + GG S E+ I +L TP
Sbjct: 258 PSILVLEPTRELSKQVENTFKEISQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGR 317
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
++ HIE +N+S +I+YVVLDEAD + + GF +I +IL+
Sbjct: 318 IIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERILS 357
Score = 67 (28.6 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 130 EKSSGSNAEVVSSFQELG-LKAEMIKAVE-KMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
+ S N + F +L + +++ +E K G+ ++IQ + GK ++
Sbjct: 130 DSESHLNDQGKCKFSDLSEINKNIVEFLENKKGIKYMTKIQSQSFKPIYEGKDIIGRSET 189
Query: 188 XXXRTLAYLLPLVQ 201
+TLA+ LPLV+
Sbjct: 190 GSGKTLAFALPLVE 203
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 126 (49.4 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 33/104 (31%), Positives = 50/104 (48%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPS 293
P +VL T E A Q +A RL S+ GG + D+ + IATP
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG-VENCIATPG 226
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E + Y+VLDEAD + D GF P+I KI++ ++
Sbjct: 227 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 83 (34.3 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 134 GSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
G N + V +F E A ++ + + P+ IQ G P L+G +V +T
Sbjct: 86 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKT 145
Query: 193 LAYLLPLV 200
L+YLLP +
Sbjct: 146 LSYLLPAI 153
>UNIPROTKB|E2RKU0 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 GeneTree:ENSGT00670000098028 OMA:LCSKGWK
EMBL:AAEX03004122 RefSeq:XP_546867.1 Ensembl:ENSCAFT00000032372
GeneID:489747 KEGG:cfa:489747 Uniprot:E2RKU0
Length = 527
Score = 162 (62.1 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 69/252 (27%), Positives = 115/252 (45%)
Query: 127 SEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFV--PSEIQCVGIPAVLNGKSVVLX 184
++ E + N SF +LGL+ +++A++ V P+ +Q IP +L G+ ++
Sbjct: 108 AQHEVPALRNLSSEGSFADLGLEPPVLRALKDAAPEVLRPTTVQSSTIPPLLRGRHILCA 167
Query: 185 XXXXXXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTE 244
+TL YLLPL+Q ++L R L P PR +VL +
Sbjct: 168 AETGSGKTLGYLLPLLQ-----------------RLLGRP-GLNPHSTPAPRGLVLVPSR 209
Query: 245 ESADQGFHMAK--FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
E A+Q +A+ IS R+ G++ ++ P +L+ATP + + ++
Sbjct: 210 ELAEQVRAVAQPLGISLGLRVRELGGGHGMNRIRVQLSKQPPADVLVATPGALWKALKSH 269
Query: 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNP---LKD-SALKS--NGQGFQTILVTAA 356
VS + ++VLDEADTL D F + IL +D LK N + Q +LV A
Sbjct: 270 LVSLKQLSFLVLDEADTLLDESFLELVDYILQKSHIAEDPDDLKDPFNPKA-QLVLVGAT 328
Query: 357 IAEMLGEQLSSL 368
E + + LS +
Sbjct: 329 FPEGVSQLLSKV 340
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 118 (46.6 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----SKALEDVSNAPIGMLIA 290
P A+++C T E Q K L S GG S +KAL++ A I ++
Sbjct: 322 PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE--GAEI--VVC 377
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ H++ + + + Y+V DEAD +FD GF ++ I + ++
Sbjct: 378 TPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVR 424
Score = 93 (37.8 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
SSF G +++ + K P+ IQC G+P ++G+ ++ +T A++ P L
Sbjct: 248 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 307
Query: 200 VQVYSQLDEE 209
+ + Q + E
Sbjct: 308 IHIMDQKELE 317
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 122 (48.0 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 33/96 (34%), Positives = 53/96 (55%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPS 293
PRAI++ T E A Q F+ A+ + L +++ GG S K L + + + +LI T
Sbjct: 85 PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSG-VDILIGTTG 143
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 329
++ + R + + I+ VVLDEAD +FD GF +I
Sbjct: 144 RIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDI 179
Score = 83 (34.3 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
F + GL+ ++I +EK G + IQ + +P +L+G+ + +TLA+L
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFL 64
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 122 (48.0 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 33/96 (34%), Positives = 53/96 (55%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPS 293
PRAI++ T E A Q F+ A+ + L +++ GG S K L + + + +LI T
Sbjct: 85 PRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAKLQSG-VDILIGTTG 143
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 329
++ + R + + I+ VVLDEAD +FD GF +I
Sbjct: 144 RIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDI 179
Score = 83 (34.3 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYL 196
F + GL+ ++I +EK G + IQ + +P +L+G+ + +TLA+L
Sbjct: 11 FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFL 64
>ASPGD|ASPL0000054998 [details] [associations]
symbol:AN0894 species:162425 "Emericella nidulans"
[GO:0000373 "Group II intron splicing" evidence=IEA] [GO:0034337
"RNA folding" evidence=IEA] [GO:0000372 "Group I intron splicing"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0005759 "mitochondrial matrix" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EnsemblFungi:CADANIAT00001763
HOGENOM:HOG000204197 OMA:DDEVPTH Uniprot:C8VUS9
Length = 641
Score = 163 (62.4 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 68/252 (26%), Positives = 115/252 (45%)
Query: 127 SEREKSSGSNAEVVSSFQELG----LKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSV 181
+E + S E+ + F ELG L +++ + K M L +E+Q I + G +
Sbjct: 63 AENSSQNVSVEELPTRFAELGERNILPRNLVENLTKHMKLETMTEVQRRTILESVKGGDM 122
Query: 182 VLXXXXXXXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEAL-LPMKPMHPRAIVL 240
+ +T+A+L+P+V+ +L+G +L+ + P+ RAIV+
Sbjct: 123 LAQAKTGTGKTVAFLIPVVE-----------KLLGDRSLLKTSYRNGRKIAPIDIRAIVI 171
Query: 241 CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHI 299
T E A+Q AK + L + GG +A L + +L+ATP + +
Sbjct: 172 SPTRELAEQIAVEAKRLVARTGLQVQVAVGGTMKRAALHQLQREGCHILVATPGRLKDLL 231
Query: 300 ED--RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D V + VLDEAD L D GF PE+ +I + L D A QT++ +A +
Sbjct: 232 TDPTSGVRAPKLNTFVLDEADRLLDEGFAPELMEIQHRLPDPAEVDR----QTLMFSATV 287
Query: 358 A-EMLGEQLSSL 368
A E++G S++
Sbjct: 288 APEVMGMVRSTM 299
>ASPGD|ASPL0000044206 [details] [associations]
symbol:AN1949 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0030687
"preribosome, large subunit precursor" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 EMBL:BN001307
GO:GO:0003723 EMBL:AACD01000029 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_659553.1
ProteinModelPortal:Q5BBY1 STRING:Q5BBY1
EnsemblFungi:CADANIAT00008609 GeneID:2875602 KEGG:ani:AN1949.2
OrthoDB:EOG4ZKNVS Uniprot:Q5BBY1
Length = 609
Score = 105 (42.0 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F ELGL + ++ +++MG +EIQ IP +L G+ V+ +TLA+L+P +++
Sbjct: 130 FTELGLSEKTLQGIKEMGFETMTEIQQRTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEM 189
Query: 203 YSQL 206
S L
Sbjct: 190 LSAL 193
Score = 105 (42.0 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 228 LPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG 286
L KP + +++ + T E A Q F +A+ + + GG + +A + +
Sbjct: 193 LRFKPRNGTGVIVVSPTRELALQIFGVARELLTAHSQTYGIVIGGANRRAEAEKLTKGVN 252
Query: 287 MLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
+LIATP +L H+++ +++ +V+DEAD + + GF E+ +I+ L
Sbjct: 253 LLIATPGRLLDHLQNTPGFVFKNLKTLVIDEADRILEVGFEDEMRQIIKIL 303
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 162 (62.1 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 60/237 (25%), Positives = 113/237 (47%)
Query: 143 FQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
F EL L ++I+A+++ G V + +Q IP + + K VV+ +TLA+LLP +
Sbjct: 16 FSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISH 259
++ +RR + P KP +++ T E + Q +A+ F+S
Sbjct: 76 EI------------------IRRSNSY-PPKPHQVMGVIISPTRELSAQIHKVAEPFVST 116
Query: 260 CARLDSSMENGGVSSKA-LEDVSNAPIGMLIATP---SEVLQHIEDRNVSCDDIRYVVLD 315
++S + GG +A + + +LI TP S++++ +E + ++ ++LD
Sbjct: 117 LPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFR--NLEILILD 174
Query: 316 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372
EAD L D GF +++ I++ L K G + T A+A++ L + ME +
Sbjct: 175 EADRLLDMGFQKQVNYIISRLP----KQRRTGLFSATQTQAVADLAKAGLRNAMEVI 227
>UNIPROTKB|A4QTC6 [details] [associations]
symbol:MRH4 "ATP-dependent RNA helicase MRH4,
mitochondrial" species:242507 "Magnaporthe oryzae 70-15"
[GO:0008150 "biological_process" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005739 GO:GO:0005524 EMBL:CM001233
GO:GO:0003723 GO:GO:0043581 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG4XPTQD RefSeq:XP_003712638.1
ProteinModelPortal:A4QTC6 EnsemblFungi:MGG_05112T0 GeneID:2675568
KEGG:mgr:MGG_05112 Uniprot:A4QTC6
Length = 651
Score = 168 (64.2 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 62/209 (29%), Positives = 94/209 (44%)
Query: 182 VLXXXXXXXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP--------- 232
+L +TLAYL+P + E ++ Q + ALL P
Sbjct: 244 LLAAETGSGKTLAYLVPAFNALKEA-EASDPDIIAYNQRRAEERALLAKNPGSKIKTRPE 302
Query: 233 MHP-----RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE-DV-SNAPI 285
HP R ++L T E DQ +AK +SH A+ + M + +S+ +E DV S A I
Sbjct: 303 PHPTMSRPRVVILVPTAELVDQVGRVAKSLSHVAKARTRMISANMSATMIENDVFSPAGI 362
Query: 286 GMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNG 345
+LI+TP + E + ++V+DEAD+L DR F S++ P+ D AL S
Sbjct: 363 DILISTPHLLASIAESHPNILSRVSHLVVDEADSLLDRSF----SEVTTPIIDRALPSIR 418
Query: 346 QGFQTILVTAAIAEMLGEQLSSLMECLER 374
Q +L +A I L L+S + R
Sbjct: 419 Q---LVLCSATIPRRLDNYLASRFPNMRR 444
Score = 37 (18.1 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 140 VSSFQELGLKAEMIKAV--EKM-GLF--VPSEIQCVGIPAVL 176
V SF + L ++ AV E + G+ P+ +Q + IPA+L
Sbjct: 166 VDSFDQFDLLPQVKDAVLNEALKGMLDIKPTPVQRLAIPALL 207
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 126 (49.4 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 42/140 (30%), Positives = 70/140 (50%)
Query: 225 EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAP 284
E L +P RA++L + E A Q + K SH L S + GG S + ED S
Sbjct: 159 ERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLE--EDFSKMM 216
Query: 285 I--GMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSAL 341
+++ TP L H++ + ++Y+V DEAD LF+ GF +++++L ++L
Sbjct: 217 TKPDIIVCTPGRFL-HLKVEMQYDLMTVQYIVFDEADRLFEMGFAEQLNELL-----ASL 270
Query: 342 KSNGQGFQTILVTAAIAEML 361
SN Q ++L +A + L
Sbjct: 271 PSNRQ---SLLFSATLPRSL 287
Score = 86 (35.3 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
SF GL ++ + K G P+ IQ IP ++ G+ VV +T A++LPL++
Sbjct: 100 SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIE 159
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 161 (61.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 52/194 (26%), Positives = 93/194 (47%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F+ +GL +++AV +G P+ IQ IP L GK ++ +T AY +P++Q+
Sbjct: 9 FEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 203 YSQLDEEHHLQLVG-ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H + G + + R L+P K + +A +S Q +A + +
Sbjct: 69 LL------HRKATGPVVEQAVRALVLVPTKELARQA-------QSMIQ--QLAAYCARDI 113
Query: 262 RLDS-SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADT 319
R+ + S S +A+ + P +++ TPS +L H++ N+ D + +V+DEAD
Sbjct: 114 RVANVSAAEDSASQRAV--LMEKP-DVVVGTPSRILNHLQQDNLKLRDSMELLVVDEADL 170
Query: 320 LFDRGFGPEISKIL 333
LF GF E+ +L
Sbjct: 171 LFSFGFEEELKSLL 184
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 163 (62.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 55/204 (26%), Positives = 91/204 (44%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTL 193
GS + S+ E GL +++ V+++G P+ IQ IP + + ++ +T
Sbjct: 339 GSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTA 398
Query: 194 AYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFH 252
A+LLPL+ ++L + R+++ P AIVL T E A Q
Sbjct: 399 AFLLPLLCYIAELPRIDEFEW-------RKNDG--------PYAIVLAPTRELAQQIEIE 443
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
KF S+ G + + N ++IATP ++ IE R + YV
Sbjct: 444 AKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGA-EIIIATPGRLVDCIERRMLVLSQCCYV 502
Query: 313 VLDEADTLFDRGFGPEISKILNPL 336
++DEAD + D GF ++KIL+ L
Sbjct: 503 IMDEADRMIDLGFEEPVNKILDAL 526
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 118 (46.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 30/117 (25%), Positives = 59/117 (50%)
Query: 228 LPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG 286
L +KP + A+++ T T E A Q F +A+ + + GG + +
Sbjct: 173 LKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVN 232
Query: 287 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 343
+L+ATP +L H+++ +++ +V+DEAD + + GF E+ +I+ L + +S
Sbjct: 233 LLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQS 289
Score = 89 (36.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 20/78 (25%), Positives = 42/78 (53%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
+ + S+ +V+ F+ +KA+++MG +++Q IP +L G+ V+
Sbjct: 97 DNDNDDDSSEDVL--FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKT 154
Query: 188 XXXRTLAYLLPLVQV-YS 204
+TLA+L+P +++ YS
Sbjct: 155 GSGKTLAFLIPAIELLYS 172
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 118 (46.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 30/117 (25%), Positives = 59/117 (50%)
Query: 228 LPMKPMHPRAIVLCT-TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG 286
L +KP + A+++ T T E A Q F +A+ + + GG + +
Sbjct: 173 LKIKPRNGTAVIIITPTRELALQIFGVARELMQFHSQTCGIVIGGADRRQEATKLAKGVN 232
Query: 287 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 343
+L+ATP +L H+++ +++ +V+DEAD + + GF E+ +I+ L + +S
Sbjct: 233 LLVATPGRLLDHLKNTQFVFSNLKALVIDEADRILEIGFEDEMKQIIKVLPNENRQS 289
Score = 89 (36.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 20/78 (25%), Positives = 42/78 (53%)
Query: 128 EREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXX 187
+ + S+ +V+ F+ +KA+++MG +++Q IP +L G+ V+
Sbjct: 97 DNDNDDDSSEDVL--FENADFSEPTMKAIKEMGFTKMTKVQAKTIPPLLAGRDVLGAAKT 154
Query: 188 XXXRTLAYLLPLVQV-YS 204
+TLA+L+P +++ YS
Sbjct: 155 GSGKTLAFLIPAIELLYS 172
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 117 (46.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----SKALEDVSNAPIGMLIA 290
P A+++C T E Q K L S GG S +KAL++ A I ++
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE--GAEI--VVC 382
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ H++ + + + Y+V DEAD +FD GF ++ I + ++
Sbjct: 383 TPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Score = 95 (38.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 200 VQVYSQLDEE 209
+ + Q + E
Sbjct: 313 IHIMDQKELE 322
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 117 (46.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----SKALEDVSNAPIGMLIA 290
P A+++C T E Q K L S GG S +KAL++ A I ++
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE--GAEI--VVC 382
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ H++ + + + Y+V DEAD +FD GF ++ I + ++
Sbjct: 383 TPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Score = 95 (38.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 200 VQVYSQLDEE 209
+ + Q + E
Sbjct: 313 IHIMDQKELE 322
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 117 (46.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----SKALEDVSNAPIGMLIA 290
P A+++C T E Q K L S GG S +KAL++ A I ++
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE--GAEI--VVC 382
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ H++ + + + Y+V DEAD +FD GF ++ I + ++
Sbjct: 383 TPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Score = 95 (38.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 200 VQVYSQLDEE 209
+ + Q + E
Sbjct: 313 IHIMDQKELE 322
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 117 (46.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----SKALEDVSNAPIGMLIA 290
P A+++C T E Q K L S GG S +KAL++ A I ++
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE--GAEI--VVC 382
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ H++ + + + Y+V DEAD +FD GF ++ I + ++
Sbjct: 383 TPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Score = 95 (38.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 200 VQVYSQLDEE 209
+ + Q + E
Sbjct: 313 IHIMDQKELE 322
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 117 (46.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----SKALEDVSNAPIGMLIA 290
P A+++C T E Q K L S GG S +KAL++ A I ++
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE--GAEI--VVC 382
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ H++ + + + Y+V DEAD +FD GF ++ I + ++
Sbjct: 383 TPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Score = 95 (38.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 200 VQVYSQLDEE 209
+ + Q + E
Sbjct: 313 IHIMDQKELE 322
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 117 (46.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----SKALEDVSNAPIGMLIA 290
P A+++C T E Q K L S GG S +KAL++ A I ++
Sbjct: 327 PIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQE--GAEI--VVC 382
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ H++ + + + Y+V DEAD +FD GF ++ I + ++
Sbjct: 383 TPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Score = 95 (38.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 200 VQVYSQLDEE 209
+ + Q + E
Sbjct: 313 IHIMDQKELE 322
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 163 (62.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 74/290 (25%), Positives = 116/290 (40%)
Query: 129 REKSSGSNAEVVSS--FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
RE N + S FQ +GL + K + K G VP+ IQ IP +L+GK VV
Sbjct: 81 REMVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMAR 140
Query: 187 XXXXRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEES 246
+T +LLP+ + L+ A RA++L T E
Sbjct: 141 TGSGKTACFLLPMFE------------------RLKARSA-----QTGARALILSPTREL 177
Query: 247 ADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC 306
A Q K + L +++ GG + + ++IATP ++ + N+
Sbjct: 178 ALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKL 237
Query: 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKD-------SA------LKSNGQGF-QTIL 352
+ YVV DEAD LF+ GF ++ +I+ L SA ++ G + +L
Sbjct: 238 QSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVL 297
Query: 353 VTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLE-----MDQAEVFDLTE 397
+ + L EQL + + D V LL+ DQ VF T+
Sbjct: 298 IRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATK 347
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 117 (46.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----SKALEDVSNAPIGMLIA 290
P A+++C T E Q K L S GG S +KAL++ A I ++
Sbjct: 327 PIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQE--GAEI--VVC 382
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ H++ + + + Y+V DEAD +FD GF ++ I + ++
Sbjct: 383 TPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Score = 95 (38.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
SSF G +++ + K P+ IQC G+P L+G+ ++ +T A++ P L
Sbjct: 253 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 200 VQVYSQLDEE 209
+ + Q + E
Sbjct: 313 IHIMDQKELE 322
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 106 (42.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 237 AIVLCTTEESADQ-GFHMAKFISHCARLDSSMENG-GVSSKALEDVSNAPIGMLIATPSE 294
AI++ T E Q G + KF + G G+S + E A I ++ TP
Sbjct: 586 AIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEI--IVCTPGR 643
Query: 295 VLQHIEDRNVSCDDIR---YVVLDEADTLFDRGFGPEISKILNPLK 337
++ + + ++R YVVLDEAD +FD GF P++ +I++ ++
Sbjct: 644 MIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVR 689
Score = 99 (39.9 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 15/60 (25%), Positives = 37/60 (61%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ ++ + G+ + ++ + ++G P+ IQC IPA+++G+ ++ +TLA++LP+
Sbjct: 509 IKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPM 568
Score = 53 (23.7 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 2 LLSPSTEEQFIKYLEGAKEQTEQTEAEKLRKRKKMKR 38
LLS S E+ ++ ++ +EQ + E E +++R++++R
Sbjct: 168 LLSTSCSEEEVEEID-KEEQQRRLEQEMIKRRERIER 203
Score = 40 (19.1 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 16 EGAKEQTEQTEAEKLRKRKKMKRTGKSLVNLSKVLYSVKQINSSPVIRPL 65
E +E+ ++ E EK R+R K + + S S + ++P+I PL
Sbjct: 122 EREREKEKEREKEKERERDKDRERDRQREKESD---SRRAAAAAPLIIPL 168
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 160 (61.4 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 54/203 (26%), Positives = 92/203 (45%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F+E + K + K G + +Q IP + G+ ++ +T A+LLP+V
Sbjct: 168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVD 227
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFI-SH 259
+ G+T A K P+ I++ T E +Q F A KF+
Sbjct: 228 ---------RMMKDGVT-------ASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGT 271
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
C R + G + ++ + +L ATP +L IE +S +++Y+VLDEAD
Sbjct: 272 CIR-PVVIYGGTQTGHSIRQIMQG-CNILCATPGRLLDIIEKGKISLVEVKYLVLDEADR 329
Query: 320 LFDRGFGPEISKILN----PLKD 338
+ D GFG ++ K+++ P KD
Sbjct: 330 MLDMGFGLDMKKLISYPEMPSKD 352
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 144 (55.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 45/171 (26%), Positives = 84/171 (49%)
Query: 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVS 273
+ + + L+R++ + K P+ +VL T E A+Q +AK R L + GG S
Sbjct: 190 IPLIERLQRNQETIK-KSRSPKVLVLAPTRELANQ---VAKDFKDITRKLSVACFYGGTS 245
Query: 274 SKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
++ + + N I +L+ TP + H++ + +R+VVLDE D + D GF ++ I
Sbjct: 246 YQSQINQIRNG-IDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDI 304
Query: 333 LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-LER-DNAGKVT 381
++ + + N Q T+L +A + + + M+ E+ D GK+T
Sbjct: 305 IHESYKTDSEDNPQ---TLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMT 352
Score = 63 (27.2 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 14/76 (18%), Positives = 34/76 (44%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXX 185
+S++ + + + + +F + E IK ++ G+ IQ V GK ++
Sbjct: 119 SSDKAEETLTREQKEGAFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQA 178
Query: 186 XXXXXRTLAYLLPLVQ 201
+T ++ +PL++
Sbjct: 179 RTGTGKTFSFAIPLIE 194
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 132 (51.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 52/185 (28%), Positives = 83/185 (44%)
Query: 235 PRAIVLCTTEESADQGFHMAK-FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293
P A++L T E A Q + AK +S R+ + + GG+ + ++IATP
Sbjct: 273 PSALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPG 332
Query: 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILV 353
+L I+ +V I+ VV+DEADT+ GF ++ IL + + + QTILV
Sbjct: 333 RLLDIIKQSSVELCGIKIVVVDEADTMLKMGFQQQVLDILEHVPNDS--------QTILV 384
Query: 354 TAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
+A I + + S L+ R G+ L L + A KKK+ E ++
Sbjct: 385 SATIPTSIEQLASQLLHNPVRIITGEKN---LPCSSVRQIILWVEEPAKKKKLFEILNDK 441
Query: 414 HLSAP 418
L P
Sbjct: 442 KLFKP 446
Score = 73 (30.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+ F+ G + ++ G VP+ IQ IP L G+ V+ +T A+LLP+
Sbjct: 203 IIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPV 262
Query: 200 V 200
+
Sbjct: 263 I 263
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 160 (61.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 54/203 (26%), Positives = 92/203 (45%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F+E + K + K G + +Q IP + G+ ++ +T A+LLP+V
Sbjct: 168 AFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVD 227
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFI-SH 259
+ G+T A K P+ I++ T E +Q F A KF+
Sbjct: 228 ---------RMMKDGVT-------ASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGT 271
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
C R + G + ++ + +L ATP +L IE +S +++Y+VLDEAD
Sbjct: 272 CIR-PVVIYGGTQTGHSIRQIMQG-CNILCATPGRLLDIIEKGKISLVEVKYLVLDEADR 329
Query: 320 LFDRGFGPEISKILN----PLKD 338
+ D GFG ++ K+++ P KD
Sbjct: 330 MLDMGFGLDMKKLISYPEMPSKD 352
>DICTYBASE|DDB_G0271708 [details] [associations]
symbol:ddx31 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0271708 GO:GO:0005524
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 KO:K14806 HSSP:P10081
RefSeq:XP_645498.1 ProteinModelPortal:Q869P0
EnsemblProtists:DDB0234202 GeneID:8618126 KEGG:ddi:DDB_G0271708
OMA:THIQEAS Uniprot:Q869P0
Length = 908
Score = 141 (54.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 39/133 (29%), Positives = 74/133 (55%)
Query: 238 IVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL 296
+++ T E + Q + + K + + + GG + A + I +L+ATP +L
Sbjct: 284 VIITPTRELSSQIYEELQKLLKPFYWIVPGIIMGGENRSAEKARIRKGINILVATPGRLL 343
Query: 297 QHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
H+++ ++ D+I++ +LDEAD L D GF +++ I+N L DS ++ Q ILV+A
Sbjct: 344 DHLQNTQSFPTDNIKWCILDEADKLLDLGFEKDVTTIIN-LLDSKKRTMKFKRQNILVSA 402
Query: 356 AIAEMLGEQLSSL 368
++E + +L+SL
Sbjct: 403 TLSEGIS-RLASL 414
Score = 68 (29.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 164 PSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
P+ IQ I +L G ++ +TL+YL+P+VQ
Sbjct: 231 PTHIQEASITPILKGNDALVKAQTGSGKTLSYLIPVVQ 268
Score = 37 (18.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 211 HLQLVGITQMLRRDEALL 228
H+Q IT +L+ ++AL+
Sbjct: 233 HIQEASITPILKGNDALV 250
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 118 (46.6 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----SKALEDVSNAPIGMLIA 290
P A+++C T E Q K L S GG S +KAL++ A I ++
Sbjct: 327 PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE--GAEI--VVC 382
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ H++ + + + Y+V DEAD +FD GF ++ I + ++
Sbjct: 383 TPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVR 429
Score = 93 (37.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
SSF G +++ + K P+ IQC G+P ++G+ ++ +T A++ P L
Sbjct: 253 SSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 312
Query: 200 VQVYSQLDEE 209
+ + Q + E
Sbjct: 313 IHIMDQKELE 322
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 137 (53.3 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
P A+ L T E A Q + S +L +++ GGVS + A +++ATP
Sbjct: 379 PIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGR 438
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ I+ + + + Y+VLDEAD +FD GFGP++ I+N ++
Sbjct: 439 LIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVR 481
Score = 77 (32.2 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
V+SF G +++A+ K + P+ IQ IP L+G+ ++ +T ++ P
Sbjct: 304 VTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPS 363
Query: 200 V 200
+
Sbjct: 364 I 364
Score = 37 (18.1 bits), Expect = 1.6e-08, Sum P(3) = 1.6e-08
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 22 TEQTEAEKLRKRKKMKRTGKSLVN 45
TE+ E +RK ++ TG L+N
Sbjct: 280 TEEQVFE-IRKNLDIRMTGTDLIN 302
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 118 (46.6 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 31/107 (28%), Positives = 53/107 (49%)
Query: 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS----SKALEDVSNAPIGMLIA 290
P A+++C T E Q K L S GG S +KAL++ A I ++
Sbjct: 329 PIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE--GAEI--VVC 384
Query: 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
TP ++ H++ + + + Y+V DEAD +FD GF ++ I + ++
Sbjct: 385 TPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVR 431
Score = 93 (37.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
SSF G +++ + K P+ IQC G+P ++G+ ++ +T A++ P L
Sbjct: 255 SSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPML 314
Query: 200 VQVYSQLDEE 209
+ + Q + E
Sbjct: 315 IHIMDQKELE 324
>DICTYBASE|DDB_G0280407 [details] [associations]
symbol:ddx56 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0000027 "ribosomal large subunit assembly" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0280407 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000036
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0000027 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HSSP:P10081 RefSeq:XP_641158.1
STRING:Q54VF1 EnsemblProtists:DDB0234216 GeneID:8622538
KEGG:ddi:DDB_G0280407 OMA:CARETEM ProtClustDB:CLSZ2730700
Uniprot:Q54VF1
Length = 685
Score = 112 (44.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 23/87 (26%), Positives = 45/87 (51%)
Query: 127 SEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXX 186
S + S ++ +F+ +GL +++A++KMG PS +Q IP L GK ++
Sbjct: 9 SVEDSVSSDLIDLECTFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKAR 68
Query: 187 XXXXRTLAYLLPLVQVYSQLDEEHHLQ 213
+T AY +P++Q E+ +++
Sbjct: 69 TGSGKTAAYSIPIIQKVLMAKEKSNIK 95
Score = 96 (38.9 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 27/103 (26%), Positives = 58/103 (56%)
Query: 236 RAIVLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALED----VSNAPIGMLIA 290
+A+VL T E +Q H + +C +L S ++ G + K L++ + + P ++++
Sbjct: 98 KAVVLVPTRELCEQVKNHFNQVSYYCQQLVSVVQLG--NDKTLDEQKGLLRDIP-DVIVS 154
Query: 291 TPSEVLQHIEDRNVSCDD-IRYVVLDEADTLFDRGFGPEISKI 332
TP+ ++QH+E++ + + +V+DEAD + + G +I+ I
Sbjct: 155 TPTRLVQHLENKTIQLQSTLDILVIDEADLVLNYGHQNDINII 197
WARNING: HSPs involving 405 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.350 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 420 384 0.00091 117 3 11 23 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 655
No. of states in DFA: 576 (61 KB)
Total size of DFA: 191 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.47u 0.15s 31.62t Elapsed: 00:00:01
Total cpu time: 31.51u 0.15s 31.66t Elapsed: 00:00:01
Start: Sat May 11 11:48:18 2013 End: Sat May 11 11:48:19 2013
WARNINGS ISSUED: 2