BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014666
(420 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255572305|ref|XP_002527091.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533514|gb|EEF35254.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 357
Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 193/386 (50%), Positives = 255/386 (66%), Gaps = 41/386 (10%)
Query: 36 MKRTGKSLVNLSKVLYS-----VKQINSSPVIRPLSTKTTTPTEETQQRVPSKPEKDSFI 90
MKRT K+ VNL+ S ++Q++ V+R LST TTT T + + + +KDSFI
Sbjct: 1 MKRTLKAFVNLALSSQSHPPLPIRQLS---VLRALSTTTTTTTRVSTESKEKESKKDSFI 57
Query: 91 LENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASE---REKSSGSNAEVVSSFQELG 147
LE F+ RKL GS KT +QQ+ SN ++ KS S EVVS F+ELG
Sbjct: 58 LEKFRQRKLQGSLKTTIATT------TKQQERSNCRADVVVGSKSEASIGEVVSGFEELG 111
Query: 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLD 207
LK E+ A ++G++VP+EIQCVGIPA+L GKS+VLSS SGSGRTL+YLLPLVQ
Sbjct: 112 LKEEVAMAAGELGVWVPTEIQCVGIPAILEGKSLVLSSNSGSGRTLSYLLPLVQ------ 165
Query: 208 EEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 267
+LR DEAL MKP P+AIVLCTTEE +D+GF +AK IS ARL S
Sbjct: 166 ------------LLRGDEALSGMKPKQPKAIVLCTTEELSDEGFRIAKSISDFARLSRS- 212
Query: 268 ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP 327
G + E++S PIGMLI TP EV+Q IE+ +++ DDI+Y+VLD AD +FD GFGP
Sbjct: 213 ---GSDHLSPENMSKPPIGMLIGTPFEVVQQIEEGSIATDDIKYLVLDNADAMFDNGFGP 269
Query: 328 EISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEM 387
EIS+I++ LK+ +SN Q QT+LVT + E+LG+ S ++E LE DNAGKVTA++L++
Sbjct: 270 EISRIISSLKNRKSQSNDQRLQTVLVTDTMTEVLGK--SGILERLEHDNAGKVTAIVLKI 327
Query: 388 DQAEVFDLTESQDALKKKVVEAMDSL 413
DQ E F++ +S DALKKK+ EA+DS
Sbjct: 328 DQMEAFEIIKSSDALKKKMAEAIDSF 353
>gi|356502333|ref|XP_003519974.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine
max]
Length = 373
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 158/337 (46%), Positives = 210/337 (62%), Gaps = 36/337 (10%)
Query: 85 EKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQL---SNIASEREKSSGSNAE--- 138
++DS I E FK RKL GS P++ PQ + S+ +E+ G E
Sbjct: 61 QRDSLIFEQFKQRKLKGS-----PKDSKGTPQVCSTSVPLSSDADTEKVVQKGVRNENDP 115
Query: 139 --VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
VV F+ELG+ E+++ +E +G FVP+EIQCV IPAVL GKSV+LSS S RTLA+L
Sbjct: 116 TLVVRGFKELGVSEELVEVMEGIGEFVPTEIQCVAIPAVLEGKSVLLSSPSEPDRTLAFL 175
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q +LRRD LL +P+AIVLC TEE ++Q F+ AK+
Sbjct: 176 LPLIQ------------------LLRRDGGLLGSNSKYPQAIVLCATEEKSEQCFNAAKY 217
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
I H A L S+ ++ + S A IG++I TPSE+L++IE+ +V +IRY+VLDE
Sbjct: 218 IIHNAELKSAKDSASPDNGQ----SKASIGLMIGTPSEILEYIEEGSVVPAEIRYLVLDE 273
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376
AD + G GPEI KIL PL+D KS + QTIL + IAE+LGEQ SS+++ LE D+
Sbjct: 274 ADCMLGSGLGPEIHKILRPLQDQESKSCVKRLQTILAISTIAEVLGEQ-SSVVKHLECDH 332
Query: 377 AGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
AG ++AM LEM+Q EVF TES DAL+KKV EAMDSL
Sbjct: 333 AGNISAMSLEMEQTEVFHFTESLDALRKKVAEAMDSL 369
>gi|225463083|ref|XP_002263640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Vitis vinifera]
Length = 635
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/297 (47%), Positives = 191/297 (64%), Gaps = 36/297 (12%)
Query: 83 KPEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAE---V 139
+P + S +LE + R L SAK+ P+ + SPP LS E E S + + +
Sbjct: 67 QPMRHSILLEKLRFRHLKDSAKS--PQTR-SPP------LSTGGKEGEPGSMKSQKKPKM 117
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
VSSF+ELGL E++ AV + G+ VP+EIQC+G+PAVL G+SVVL S +GSG+TLAY+LPL
Sbjct: 118 VSSFEELGLSEEVMAAVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPL 177
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEAL--LPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
VQ +LRRDEAL + MKP PRA+VLC T E ++Q F +AK I
Sbjct: 178 VQ------------------LLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSI 219
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
SH AR S+M +GG + ED N PI M++ TP VLQHIE+ N+ +I+Y+VLDEA
Sbjct: 220 SHHARFRSTMVSGGGRLRPQEDSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEA 279
Query: 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 370
DT+FDRGFGP+I K L PLK+ A KS+ QGFQT+LVTA A+ +++ E+ ++
Sbjct: 280 DTMFDRGFGPDIRKFLAPLKNRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVH 336
>gi|115434952|ref|NP_001042234.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|75321764|sp|Q5VRY0.1|RH39_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|55295927|dbj|BAD67795.1| putative VASA [Oryza sativa Japonica Group]
gi|113531765|dbj|BAF04148.1| Os01g0184500 [Oryza sativa Japonica Group]
gi|222617875|gb|EEE54007.1| hypothetical protein OsJ_00660 [Oryza sativa Japonica Group]
Length = 625
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 183/306 (59%), Gaps = 32/306 (10%)
Query: 72 PTE-ETQQRVPSKPEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASERE 130
PTE ET R P + +LE + R L G P P P Q E+ + +E
Sbjct: 47 PTEPETTAR--EAPSRHELLLERLRQRHLKGV-----PAATPRPAQREKGRGGGGGGAQE 99
Query: 131 KSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSG 190
EVV SF+ELGL E++ A+ +MG+ P+EIQCVG+PAVL G SVVL S +GSG
Sbjct: 100 LQQKRRVEVVDSFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSG 159
Query: 191 RTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL--PMKPMHPRAIVLCTTEESAD 248
+TLAYLLPLVQ +LRRDEA+L MKP PRA+VLC T E +
Sbjct: 160 KTLAYLLPLVQ------------------LLRRDEAMLGMSMKPRRPRAVVLCPTRELTE 201
Query: 249 QGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD 308
Q F +AK ISH AR S+M +GG + ED N P+ M++ TP +L HI+D N+ D
Sbjct: 202 QVFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGD 261
Query: 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQ 364
I+Y+VLDEADT+FD+GFGP+I K L PLK+ A K QGFQT+LVTA A+ +++ E+
Sbjct: 262 IKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDEE 321
Query: 365 LSSLME 370
++
Sbjct: 322 FEGIVH 327
>gi|218187644|gb|EEC70071.1| hypothetical protein OsI_00680 [Oryza sativa Indica Group]
Length = 618
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 139/307 (45%), Positives = 184/307 (59%), Gaps = 33/307 (10%)
Query: 70 TTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASER 129
T PTE R P + +LE + R L G P P P Q E+ + A E
Sbjct: 46 TAPTEPDAAR--EAPSRHELLLERLRQRHLKGV-----PAATPRPAQREKGRGGGGAQEL 98
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
++ EVV SF+ELGL E++ A+ +MG+ P+EIQCVG+PAVL G SVVL S +GS
Sbjct: 99 QQKR--RVEVVESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGS 156
Query: 190 GRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL--PMKPMHPRAIVLCTTEESA 247
G+TLAYLLPLVQ +LRRDEA+L MKP PRA+VLC T E
Sbjct: 157 GKTLAYLLPLVQ------------------LLRRDEAMLGMSMKPRRPRAVVLCPTRELT 198
Query: 248 DQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
+Q F +AK ISH AR S+M +GG + ED N P+ M++ TP +L HI+D N+
Sbjct: 199 EQVFRVAKSISHHARFRSTMVSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYG 258
Query: 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGE 363
DI+Y+VLDEADT+FD+GFGP+I K L PLK+ A K QGFQT+LVTA A+ +++ E
Sbjct: 259 DIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLIDE 318
Query: 364 QLSSLME 370
+ ++
Sbjct: 319 EFEGIVH 325
>gi|255572303|ref|XP_002527090.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533513|gb|EEF35253.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 601
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 129/256 (50%), Positives = 171/256 (66%), Gaps = 27/256 (10%)
Query: 124 NIASEREKS---SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS 180
N+ +E++ S S ++ SF+EL L E++ AV +M + VP+EIQC+GIPAVL+GKS
Sbjct: 101 NVETEKDDSFNKSKKGKKIAGSFEELSLSDEVMGAVREMEIEVPTEIQCIGIPAVLDGKS 160
Query: 181 VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLP--MKPMHPRAI 238
VVL S +GSG+TLAY+LPLVQ +LRRDEALL MKP PRAI
Sbjct: 161 VVLGSHTGSGKTLAYMLPLVQ------------------LLRRDEALLGLLMKPRRPRAI 202
Query: 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298
VLC T E ++Q F +AK ISH AR S+M +GG + ED N+PI M++ TP +LQH
Sbjct: 203 VLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRMRPQEDSLNSPIDMIVGTPGRILQH 262
Query: 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA--- 355
IED N+ DI+Y+VLDEADT+FDRGFGP+I K L PLK+ A K +G GFQTILVTA
Sbjct: 263 IEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRASKPDGLGFQTILVTATMT 322
Query: 356 -AIAEMLGEQLSSLME 370
A+ +++ E+ ++
Sbjct: 323 KAVQKLIDEEFQGIVH 338
>gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa]
gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa]
Length = 573
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 162/236 (68%), Gaps = 24/236 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SF+ELGL E++ AV++MG+ VP+EIQC+GIPA+L+ ++VVL S +GSG+TLAY+LP
Sbjct: 114 IAGSFEELGLSEEVMGAVKEMGIEVPTEIQCIGIPAILDSRTVVLGSHTGSGKTLAYMLP 173
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKF 256
LVQ +LRRDEALL MKP PRA+VLC T E ++Q F +AK
Sbjct: 174 LVQ------------------LLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVFRVAKS 215
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
I H AR S+M +GG + ED N PI M++ TP VLQHI+D N+ DI+Y+VLDE
Sbjct: 216 IGHHARFRSTMVSGGGRMRPQEDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDE 275
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSL 368
ADT+FDRGFGP+I K L PLK+ KS+GQGFQTILVTA A+ +++ E+ +
Sbjct: 276 ADTMFDRGFGPDIHKFLGPLKNRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGI 331
>gi|358346247|ref|XP_003637181.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355503116|gb|AES84319.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 684
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 192/331 (58%), Gaps = 38/331 (11%)
Query: 50 LYSVKQINSSPVI----RPLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKT 105
L+ + Q N SP+ P S+ TTTP EK SF+LE ++R L G ++
Sbjct: 24 LFKLSQ-NPSPLFPKRFTPFSSLTTTPQSSPSLLSDPDQEKHSFLLEKLRIRHLKGGSR- 81
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPS 165
N + + E+ G V SF+ LGL E++ AV +MG+ VP+
Sbjct: 82 ----NDERVVRKVEGVKKKKEGVDEEDGGG----VGSFEGLGLGDEVMGAVREMGIEVPT 133
Query: 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDE 225
EIQC+G+PAVL+GKSVVL S +GSG+TLAYLLPLVQ +LRRDE
Sbjct: 134 EIQCIGVPAVLDGKSVVLGSHTGSGKTLAYLLPLVQ------------------LLRRDE 175
Query: 226 AL--LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNA 283
+ L +KP PRA+VLC T E ++Q F +AK ISH AR +M +GG + E+ +
Sbjct: 176 QMNGLVLKPKRPRAVVLCPTRELSEQVFRVAKAISHHARFRCTMVSGGGRLRPQEESLSN 235
Query: 284 PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 343
PI M++ TP +LQHIE+ N+ DI+YVVLDEADT+FDRGFGP+I K L PLK A K
Sbjct: 236 PIDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIKKFLAPLKHRASKP 295
Query: 344 NGQGFQTILVTA----AIAEMLGEQLSSLME 370
+ GFQT+LVTA A+ ++ E+ ++
Sbjct: 296 DSLGFQTVLVTATMTKAVQNLVDEEFQGIVH 326
>gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor]
Length = 612
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/309 (42%), Positives = 181/309 (58%), Gaps = 50/309 (16%)
Query: 94 FKLR----KLNGSAKTNNPENKPSPP--------------------QPEQQQLSNIASER 129
F+LR L+ +A T P + P+PP P ++ +ER
Sbjct: 21 FRLRLLRAALSTAAPTIGPTSTPAPPPRHELLLERLRLRHLKDASSSPGAPAPASRGAER 80
Query: 130 --EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGS 187
++ G E SF+ELGL E++ A+ +MG+ P+EIQCVG+PAVL G SVVL S +
Sbjct: 81 SSQQGKGKRVEAAESFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHT 140
Query: 188 GSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL--PMKPMHPRAIVLCTTEE 245
GSG+TLAYLLPLVQ +LRRDEA+L MKP PRA+VLC T E
Sbjct: 141 GSGKTLAYLLPLVQ------------------LLRRDEAMLGISMKPRRPRAVVLCPTRE 182
Query: 246 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305
+Q + +AK ISH AR S+M +GG + ED N P+ M++ TP +L HI+D N+
Sbjct: 183 LTEQVYRVAKSISHHARFRSTMVSGGTRLRPQEDSLNMPVDMVVGTPGRILDHIKDGNMV 242
Query: 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEML 361
DI+Y+VLDEADT+FD+GFGP+I K L PLK+ A K QGFQT+LVTA A+ +++
Sbjct: 243 YGDIKYLVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQKLI 302
Query: 362 GEQLSSLME 370
E+ ++
Sbjct: 303 DEEFEGIVH 311
>gi|212275171|ref|NP_001130422.1| uncharacterized protein LOC100191518 [Zea mays]
gi|194689078|gb|ACF78623.1| unknown [Zea mays]
gi|224029523|gb|ACN33837.1| unknown [Zea mays]
gi|413942755|gb|AFW75404.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 613
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 159/243 (65%), Gaps = 24/243 (9%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
G E SF+ELGL E++ A+ +MG+ P+EIQCVG+PAVL G SVVL S +GSG+TL
Sbjct: 88 GKRVEAAESFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTL 147
Query: 194 AYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGF 251
AYLLPLVQ +LRRDEA+L MKP PRA+VLC T E +Q +
Sbjct: 148 AYLLPLVQ------------------LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVY 189
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
+AK ISH AR S+M +GG + ED N P+ M++ TP +L HI+D N+ DI+Y
Sbjct: 190 RVAKSISHHARFRSTMVSGGTRLRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKY 249
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSS 367
+VLDEADT+FD+GFGP+I K L PLK+ A K + QGFQT+LVTA A+ +++ E+
Sbjct: 250 LVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEG 309
Query: 368 LME 370
++
Sbjct: 310 IVH 312
>gi|449510866|ref|XP_004163791.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 180/293 (61%), Gaps = 29/293 (9%)
Query: 84 PEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSF 143
P K S +LE + R L SA P+ KP+ Q + + E +KS ++ SF
Sbjct: 68 PLKHSQLLERLRTRHLKESA----PKTKPTR-NTLSQSVGSAEDEMKKSEKKKKKLDESF 122
Query: 144 QELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVY 203
+ELGL E++ AV +MG+ VPSEIQC+GIPAVL GKSV+L S +GSG+TLAYLLPLVQ
Sbjct: 123 EELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQ-- 180
Query: 204 SQLDEEHHLQLVGITQMLRRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+LRRDE L MKP PRA+VLC T E ++Q F ++K ISH A
Sbjct: 181 ----------------LLRRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHA 224
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R S+M +GG + ED + PI M++ TP VLQHIE N+ DI+Y+VLDEADT+F
Sbjct: 225 RFRSTMVSGGGRLRPQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMF 284
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 370
D GFGP+I K + PLK A + QGFQTILVTA A+ +++ E+ ++
Sbjct: 285 DHGFGPDIRKFIGPLKHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVH 337
>gi|449443857|ref|XP_004139692.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 634
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 180/293 (61%), Gaps = 29/293 (9%)
Query: 84 PEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSF 143
P K S +LE + R L SA P+ KP+ Q + + E +KS ++ SF
Sbjct: 68 PLKHSQLLERLRTRHLKESA----PKTKPTR-NTLSQSVGSAEDEMKKSEKKKKKLDESF 122
Query: 144 QELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVY 203
+ELGL E++ AV +MG+ VPSEIQC+GIPAVL GKSV+L S +GSG+TLAYLLPLVQ
Sbjct: 123 EELGLNEEVMGAVREMGIQVPSEIQCIGIPAVLEGKSVILGSHTGSGKTLAYLLPLVQ-- 180
Query: 204 SQLDEEHHLQLVGITQMLRRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+LRRDE L MKP PRA+VLC T E ++Q F ++K ISH A
Sbjct: 181 ----------------LLRRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHA 224
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R S+M +GG + ED + PI M++ TP VLQHIE N+ DI+Y+VLDEADT+F
Sbjct: 225 RFRSTMVSGGGRLRPQEDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMF 284
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 370
D GFGP+I K + PLK A + QGFQTILVTA A+ +++ E+ ++
Sbjct: 285 DHGFGPDIRKFIGPLKHRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVH 337
>gi|413942754|gb|AFW75403.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 360
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 159/243 (65%), Gaps = 24/243 (9%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
G E SF+ELGL E++ A+ +MG+ P+EIQCVG+PAVL G SVVL S +GSG+TL
Sbjct: 88 GKRVEAAESFEELGLGEEVMSALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTL 147
Query: 194 AYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGF 251
AYLLPLVQ +LRRDEA+L MKP PRA+VLC T E +Q +
Sbjct: 148 AYLLPLVQ------------------LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVY 189
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
+AK ISH AR S+M +GG + ED N P+ M++ TP +L HI+D N+ DI+Y
Sbjct: 190 RVAKSISHHARFRSTMVSGGTRLRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKY 249
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSS 367
+VLDEADT+FD+GFGP+I K L PLK+ A K + QGFQT+LVTA A+ +++ E+
Sbjct: 250 LVLDEADTMFDQGFGPDIRKFLAPLKNRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEG 309
Query: 368 LME 370
++
Sbjct: 310 IVH 312
>gi|30681173|ref|NP_849348.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
gi|108861892|sp|Q56X76.2|RH39_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 39
gi|34365771|gb|AAQ65197.1| At4g09730 [Arabidopsis thaliana]
gi|51968836|dbj|BAD43110.1| unnamed protein product [Arabidopsis thaliana]
gi|51969012|dbj|BAD43198.1| unnamed protein product [Arabidopsis thaliana]
gi|51969674|dbj|BAD43529.1| unnamed protein product [Arabidopsis thaliana]
gi|332657387|gb|AEE82787.1| DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana]
Length = 621
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/261 (46%), Positives = 168/261 (64%), Gaps = 26/261 (9%)
Query: 116 QPEQQQLSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP 173
+P QQ+ S++ E+SS + ++V +FQELGL E++ A++++ + VP+EIQC+GIP
Sbjct: 85 KPPQQRPSSVVGVEEESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIP 144
Query: 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL--PMK 231
AV+ KSVVL S +GSG+TLAYLLP+VQ ++R DEA L K
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQ------------------LMREDEANLGKKTK 186
Query: 232 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIAT 291
P PR +VLC T E ++Q + +AK ISH AR S + +GG + ED N I M++ T
Sbjct: 187 PRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGT 246
Query: 292 PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTI 351
P +LQHIE+ N+ DI Y+VLDEADT+FDRGFGPEI K L PL ALK+N QGFQT+
Sbjct: 247 PGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTV 306
Query: 352 LVTA----AIAEMLGEQLSSL 368
LVTA A+ +++ E+ +
Sbjct: 307 LVTATMTMAVQKLVDEEFQGI 327
>gi|356499257|ref|XP_003518458.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine
max]
Length = 636
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 129/276 (46%), Positives = 172/276 (62%), Gaps = 25/276 (9%)
Query: 86 KDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQE 145
K S +LE + R L +AK P P + E+ + A+ + + V+SF+E
Sbjct: 79 KHSILLERLRSRHLRDAAKA-----APEPRKKEKVAAAAAAAAAAAEAKEKKKAVASFEE 133
Query: 146 LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQ 205
LGL E++ AV +MG+ VP+EIQ +GIPAVL KSVVL S +GSG+TLAYLLPL
Sbjct: 134 LGLSEEVMGAVREMGIEVPTEIQSIGIPAVLEEKSVVLGSHTGSGKTLAYLLPL------ 187
Query: 206 LDEEHHLQLVGITQMLRRDEAL--LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 263
Q+LRRDE L + +KP PRA+VLC T E ++Q F +AK ISH AR
Sbjct: 188 ------------AQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARF 235
Query: 264 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 323
+M +GG + ED N PI +++ TP VLQHIE+ N+ DI+Y+VLDEADT+FDR
Sbjct: 236 RCTMVSGGGRLRPQEDSLNNPIDVVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDR 295
Query: 324 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
GFGP+I K + PLK+ A K +G GFQTILVTA + +
Sbjct: 296 GFGPDIRKFIGPLKNRASKPDGLGFQTILVTATMTK 331
>gi|51968848|dbj|BAD43116.1| unnamed protein product [Arabidopsis thaliana]
Length = 621
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/261 (46%), Positives = 167/261 (63%), Gaps = 26/261 (9%)
Query: 116 QPEQQQLSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP 173
+P QQ+ S++ E+SS + ++V +FQELGL E++ A++++ + VP+EIQC+GIP
Sbjct: 85 KPPQQRPSSVVGVEEESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIP 144
Query: 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL--PMK 231
AV+ KSVVL S +GSG+TLAYLLP+VQ ++R DEA L K
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQ------------------LMREDEANLGKKTK 186
Query: 232 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIAT 291
P PR +VLC T E ++Q + +AK ISH AR S + +GG + ED N I M+ T
Sbjct: 187 PRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVAGT 246
Query: 292 PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTI 351
P +LQHIE+ N+ DI Y+VLDEADT+FDRGFGPEI K L PL ALK+N QGFQT+
Sbjct: 247 PGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTV 306
Query: 352 LVTA----AIAEMLGEQLSSL 368
LVTA A+ +++ E+ +
Sbjct: 307 LVTATMTMAVQKLVDEEFQGI 327
>gi|297739373|emb|CBI29363.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 151/222 (68%), Gaps = 24/222 (10%)
Query: 155 AVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214
AV + G+ VP+EIQC+G+PAVL G+SVVL S +GSG+TLAY+LPLVQ
Sbjct: 3 AVRETGISVPTEIQCIGVPAVLEGRSVVLGSHTGSGKTLAYMLPLVQ------------- 49
Query: 215 VGITQMLRRDEAL--LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 272
+LRRDEAL + MKP PRA+VLC T E ++Q F +AK ISH AR S+M +GG
Sbjct: 50 -----LLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGG 104
Query: 273 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
+ ED N PI M++ TP VLQHIE+ N+ +I+Y+VLDEADT+FDRGFGP+I K
Sbjct: 105 RLRPQEDSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKF 164
Query: 333 LNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 370
L PLK+ A KS+ QGFQT+LVTA A+ +++ E+ ++
Sbjct: 165 LAPLKNRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVH 206
>gi|297809151|ref|XP_002872459.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
gi|297318296|gb|EFH48718.1| hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp.
lyrata]
Length = 620
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/266 (45%), Positives = 169/266 (63%), Gaps = 26/266 (9%)
Query: 111 KPSPPQPEQQQLSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
K S P+Q+ S++ E++S + ++V +FQELGL E++ A++++ + VP+EIQ
Sbjct: 80 KESAKPPQQRPSSSVVGVEEENSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQ 139
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL 228
C+GIPAV+ KSVVL S +GSG+TLAYLLP+VQ ++R DEA L
Sbjct: 140 CIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ------------------LMREDEANL 181
Query: 229 --PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG 286
KP PR +VLC T E ++Q + +AK ISH AR S + +GG + ED N I
Sbjct: 182 GKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAID 241
Query: 287 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQ 346
M++ TP +LQHIE+ N+ DI Y+VLDEADT+FDRGFGPEI K L PL ALK+N Q
Sbjct: 242 MVVGTPGRILQHIEEGNMVYGDITYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQ 301
Query: 347 GFQTILVTA----AIAEMLGEQLSSL 368
GFQT+LVTA A+ +++ E+ +
Sbjct: 302 GFQTVLVTATMTTAVQKLVDEEFQGI 327
>gi|449446492|ref|XP_004141005.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 357
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 204/369 (55%), Gaps = 49/369 (13%)
Query: 46 LSKVLYSVKQINSSPVIRPLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKT 105
LS + Q SS R S+ TP E Q P + +DS +LE F+LRKL G
Sbjct: 32 LSTNAFLASQFCSSTFSR--SSTDGTPVENEQ---PRQSNRDSTLLEKFRLRKLKG---- 82
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPS 165
LS I+ + S+G + ++ F++LGL E+ +AVEKMG+ PS
Sbjct: 83 ----------------LSKISQDSPSSNGGE-KAMTGFRDLGLCNELGEAVEKMGVLAPS 125
Query: 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDE 225
E+ C GIPAVL GK+VV R LAYLLPL+Q L+RDE
Sbjct: 126 ELDCAGIPAVLEGKNVVFGYLDEPERALAYLLPLIQ------------------NLKRDE 167
Query: 226 ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPI 285
+ HPRA V+C T + +++ F MAK+ S+ +L + +NG + + S+ I
Sbjct: 168 KRYGTRSKHPRAFVMCPTAQLSEELFCMAKYFSNYRQLKTPRDNGCGELELQKSASDVSI 227
Query: 286 GMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNG 345
G+LI TP E+ + IED +V D+I Y+V DE D++FD GFGP I KIL +++ K
Sbjct: 228 GLLIGTPDEISELIEDGSVVLDEINYLVFDELDSMFDLGFGPNIKKILTSVRNCNKKC-- 285
Query: 346 QGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKK 405
Q+I+VT+ + +M+ EQ SSL++ L +AG++ AM+LE+++ E F L ES DALK K
Sbjct: 286 ---QSIVVTSTLIKMMHEQRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSK 342
Query: 406 VVEAMDSLH 414
+ + ++SL
Sbjct: 343 LADVVESLR 351
>gi|357125633|ref|XP_003564496.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like
[Brachypodium distachyon]
Length = 625
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 154/235 (65%), Gaps = 24/235 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ELGL+ E++ A+ + G+ P+EIQCVG+PAVL+G SVVL S +GSG+TLAYLLPLVQ
Sbjct: 92 SFEELGLEEEVMAAMREAGISKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQ 151
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHMAKFISH 259
+LR DEA L M KP PRA+VLC T E +Q F +AK ISH
Sbjct: 152 ------------------LLRHDEATLGMSLKPRRPRAVVLCPTRELTEQVFRVAKSISH 193
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
AR S+M +GG + ED N P+ M++ TP +L HI++ N+ DI+Y+VLDEADT
Sbjct: 194 HARFRSTMVSGGTRLRPQEDSLNMPVDMVVGTPGRILDHIKEGNIVYGDIKYLVLDEADT 253
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSSLME 370
+FD+GFG +I K L PLK+ A K QGFQT+LV+A A+ +++ E+ ++
Sbjct: 254 MFDQGFGEDIRKFLAPLKNRASKPGDQGFQTVLVSATMTKAVQKLIDEEFEGIVH 308
>gi|449494189|ref|XP_004159473.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis
sativus]
Length = 357
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 203/369 (55%), Gaps = 49/369 (13%)
Query: 46 LSKVLYSVKQINSSPVIRPLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKT 105
LS + Q SS R S+ TP E Q P + +DS +LE F+LRKL G
Sbjct: 32 LSTNAFLASQFCSSTFSR--SSTDGTPVENEQ---PRQSNRDSTLLEKFRLRKLKG---- 82
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPS 165
LS I+ + S+G + ++ F++LGL E+ +AVEKMG+ PS
Sbjct: 83 ----------------LSKISQDSPSSNGGE-KAMTGFRDLGLCNELGEAVEKMGVLAPS 125
Query: 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDE 225
E+ C GIPAVL GK+VV R LAYLLPL+Q L+RDE
Sbjct: 126 ELDCAGIPAVLEGKNVVFGYLDEPERALAYLLPLIQ------------------NLKRDE 167
Query: 226 ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPI 285
+ HPRA V+C T + +++ F MAK+ S+ +L + +NG + + S+ I
Sbjct: 168 KRYGTRSKHPRAFVMCPTAQLSEELFCMAKYFSNYRQLKTPRDNGCGELELQKSASDVSI 227
Query: 286 GMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNG 345
G+LI TP E+ + IED +V D+I Y+V DE D++F GFGP I KIL +++ K
Sbjct: 228 GLLIGTPDEISELIEDGSVVLDEINYLVFDELDSMFGLGFGPNIKKILTSVRNCNKKC-- 285
Query: 346 QGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKK 405
Q+I+VT+ + +M+ EQ SSL++ L +AG++ AM+LE+++ E F L ES DALK K
Sbjct: 286 ---QSIVVTSTLIKMMHEQRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSK 342
Query: 406 VVEAMDSLH 414
+ + ++SL
Sbjct: 343 LADVVESLR 351
>gi|326523585|dbj|BAJ92963.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 653
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 141/221 (63%), Gaps = 20/221 (9%)
Query: 155 AVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214
A+ + G+ P+EIQCVG+PAVL+G SVVL S +GSG+TLAYLLPLVQ
Sbjct: 132 AMREAGITKPTEIQCVGVPAVLSGTSVVLGSHTGSGKTLAYLLPLVQ------------- 178
Query: 215 VGITQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGV 272
+LR DEA L MKP PRA+VLC T E +Q F +AK ISH AR S+M +GG
Sbjct: 179 -----LLRHDEATLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGT 233
Query: 273 SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI 332
K ED N P+ M++ TP +L HI++ N+ DI+Y+VLDEADT+FD+GFG +I K
Sbjct: 234 RLKPQEDSLNMPVDMVVGTPGRILDHIKEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKF 293
Query: 333 LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
L PLK+ + K QG QTILV+A + + + + + E +E
Sbjct: 294 LAPLKNRSSKPGDQGLQTILVSATMTKGVQKLIDEEFEGIE 334
>gi|168002750|ref|XP_001754076.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694630|gb|EDQ80977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 163/271 (60%), Gaps = 35/271 (12%)
Query: 91 LENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKA 150
LE + R++ + K K +PP PE + + +E G + F +LGL
Sbjct: 146 LERLRQRQMRDAVKLQ----KLNPPMPEPRVM------KETVPG-----LVRFNDLGLSD 190
Query: 151 EMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEH 210
E+++AV+++GL P+E+Q +GIP VL G++VV++S +GSG+TLAYLLP+VQ
Sbjct: 191 EVMEAVKELGLMEPTEVQAIGIPTVLAGENVVMASHTGSGKTLAYLLPIVQA-------- 242
Query: 211 HLQLVGITQMLRRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME 268
LRRDEA + PRA+VLC T E A+Q F +AK + H AR ++M
Sbjct: 243 ----------LRRDEAASGKFTRARRPRAVVLCPTRELAEQVFRVAKSLCHHARFRAAMV 292
Query: 269 NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 328
GG K ED N I +++ATP +L HIE N++ D++YVVLDEADT+FD+GFG E
Sbjct: 293 GGGSRMKTQEDSLNKAIDLIVATPGRLLMHIEQGNMAYGDLKYVVLDEADTMFDKGFGVE 352
Query: 329 ISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
+ K LNPL++ + + G+ FQT+LVTA I +
Sbjct: 353 VRKFLNPLRNRSRQPEGEPFQTVLVTATITK 383
>gi|4538903|emb|CAB39640.1| putative protein [Arabidopsis thaliana]
gi|7267668|emb|CAB78096.1| putative protein [Arabidopsis thaliana]
Length = 496
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 143/225 (63%), Gaps = 20/225 (8%)
Query: 116 QPEQQQLSNIASEREKSS--GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP 173
+P QQ+ S++ E+SS + ++V +FQELGL E++ A++++ + VP+EIQC+GIP
Sbjct: 85 KPPQQRPSSVVGVEEESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIP 144
Query: 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL--PMK 231
AV+ KSVVL S +GSG+TLAYLLP+VQV S+L +R DEA L K
Sbjct: 145 AVMERKSVVLGSHTGSGKTLAYLLPIVQVLSEL--------------MREDEANLGKKTK 190
Query: 232 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIAT 291
P PR +VLC T E ++Q + H AR S + +GG + ED N I M++ T
Sbjct: 191 PRRPRTVVLCPTRELSEQVCLHQDY--HHARFRSILVSGGSRIRPQEDSLNNAIDMVVGT 248
Query: 292 PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
P +LQHIE+ N+ DI Y+VLDEADT+FDRGFGPEI K L PL
Sbjct: 249 PGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPL 293
>gi|302766713|ref|XP_002966777.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
gi|300166197|gb|EFJ32804.1| hypothetical protein SELMODRAFT_86079 [Selaginella moellendorffii]
Length = 464
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 148/234 (63%), Gaps = 22/234 (9%)
Query: 127 SEREKSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
ER S AEV SF ELGL E+ A+E++ L P+E+Q + IPA+L+G++VV++S
Sbjct: 86 GERLDYEDSLAEVSTQSFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVAS 145
Query: 186 GSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDE--ALLPMKPMHPRAIVLCTT 243
+GSG+TLAY+LPLVQVY LR+DE + ++ PRA+VLC T
Sbjct: 146 HTGSGKTLAYMLPLVQVY-------------FIPCLRKDEIESGRTVRARKPRALVLCPT 192
Query: 244 EESADQG--FHMAKFI---SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298
E +Q F ++ + SH AR S+M +GG + D N + M++ TP +L H
Sbjct: 193 RELTEQVLIFFYSRSLQKHSHHARFRSAMISGGFRPRPQADALNGALDMVVGTPGRLLMH 252
Query: 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 352
+E+ N++ DI+YVV+DEADT+FDRGFGPE+ KI++PL++ AL+ NG FQTIL
Sbjct: 253 VEEGNLAFGDIKYVVIDEADTMFDRGFGPELKKIIDPLRNRALR-NGSDFQTIL 305
>gi|302792411|ref|XP_002977971.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
gi|300153992|gb|EFJ20628.1| hypothetical protein SELMODRAFT_176623 [Selaginella moellendorffii]
Length = 591
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 145/228 (63%), Gaps = 24/228 (10%)
Query: 135 SNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
S AEV SF ELGL E+ A+E++ L P+E+Q + IPA+L+G++VV++S +GSG+TL
Sbjct: 94 SLAEVSTQSFDELGLAEELRGAIEELDLKEPTEVQRMAIPAILDGENVVVASHTGSGKTL 153
Query: 194 AYLLPLVQVYSQLDEEHHLQLVGITQMLRRDE--ALLPMKPMHPRAIVLCTTEESADQG- 250
AY+LPLVQVY LR+DE + ++ PRA+VLC T E +Q
Sbjct: 154 AYMLPLVQVY-------------FIPCLRKDEIESGRTVRARKPRALVLCPTRELTEQVL 200
Query: 251 -FHMAKFI-----SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV 304
F ++ + H AR S+M +GG + D N + M++ TP +L H+E+ N+
Sbjct: 201 IFFYSRSLQKHSFCHHARFRSAMISGGFRPRPQADALNGALDMVVGTPGRLLMHVEEGNL 260
Query: 305 SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTIL 352
+ DI+YVV+DEADT+FDRGFGPE+ KI++PL++ AL+ NG FQTIL
Sbjct: 261 AFGDIKYVVIDEADTMFDRGFGPELKKIIDPLRNRALR-NGSDFQTIL 307
>gi|358346271|ref|XP_003637193.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355503128|gb|AES84331.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 410
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 150/262 (57%), Gaps = 32/262 (12%)
Query: 85 EKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQ 144
E+DS IL+ FK RKL GS +N+ N +++ + N + VV F+
Sbjct: 44 ERDSLILQQFKQRKLKGS--SNSVLNSSFDDTNDEKMIQN-------GLKNGTMVVGGFK 94
Query: 145 ELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYS 204
ELG+ E+I+ +E++G FVPSEIQCV IP +L+GKS++LSS S RTLAYLLPL+QV
Sbjct: 95 ELGMSDELIEVMEEIGEFVPSEIQCVVIPTILDGKSLLLSSPSQHDRTLAYLLPLIQVD- 153
Query: 205 QLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 264
+MLRRD LL +PRA+VLC +EE +Q F+ A++I H A +
Sbjct: 154 -------------VKMLRRDRELLGSNSKYPRAVVLCASEEKVEQCFNAARYIIHNAEVK 200
Query: 265 SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 324
S+ ++ SN+ IG++I TP E+LQ+IE+ + +++Y L+ T+ +R
Sbjct: 201 SAKNRASSDTEK----SNSSIGLMIGTPYEILQYIEEGTIVPAELKY--LEFEMTILER- 253
Query: 325 FGPEISKILNPLKDSALKSNGQ 346
E++ I+ + ++ L+ G
Sbjct: 254 --VEVAPIVEKMVENKLRWFGH 273
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 66/102 (64%), Gaps = 15/102 (14%)
Query: 313 VLDEADTLF-DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371
VLDEAD++ GPEI+KI+ PL+ + KS+ + QTI+ + IA
Sbjct: 323 VLDEADSMLGSSNIGPEINKIIRPLQHNESKSSVKRLQTIMAISTIA------------- 369
Query: 372 LERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
ERD+AG ++A+ +EM++ EVF LTES DALKKK+ EAM+SL
Sbjct: 370 -ERDHAGNISALSVEMEETEVFHLTESLDALKKKLEEAMNSL 410
>gi|307105623|gb|EFN53871.1| hypothetical protein CHLNCDRAFT_58353 [Chlorella variabilis]
Length = 572
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 27/241 (11%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSV--V 182
+A+ER++++ A +F +LG+ E+ A+ + G+ P+EIQ +PA+L ++ +
Sbjct: 50 VAAERQQAAAPPA----TFTQLGVSQELQAALAEKGISEPTEIQAAAVPALLQHRAADFL 105
Query: 183 LSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242
L+S +GSG+TLAYLLPLVQ+ + + QL G RR AL VL
Sbjct: 106 LASHTGSGKTLAYLLPLVQLLKEGE-----QLRGAAARPRRPRAL-----------VLGP 149
Query: 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
T E DQ +AK +SH A+ SS+ NGG + P+ +L+ TP V+QH E
Sbjct: 150 TRELTDQILRVAKALSHTAKFRSSVVNGGGDMGGQREALERPLDVLVGTPQRVMQHAEKS 209
Query: 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362
++ D+ VVLDEADT+FDRGFGPE+ IL +A++ Q + +LV+A +++ +G
Sbjct: 210 HLYYGDVEVVVLDEADTMFDRGFGPEVKAIL-----AAVRGKEQPARCVLVSATMSKAVG 264
Query: 363 E 363
Sbjct: 265 R 265
>gi|255074681|ref|XP_002501015.1| predicted protein [Micromonas sp. RCC299]
gi|226516278|gb|ACO62273.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 403
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 131/233 (56%), Gaps = 21/233 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL+ ++ A + MGL P++IQ IP +L+G +++S +GSG+TL YLLP++Q
Sbjct: 2 SFADLGLEEALVAATDSMGLTRPTDIQASAIPKILSGGHFLVASHTGSGKTLTYLLPVIQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ E + KP PR +++ T E A+Q +AK +SH
Sbjct: 62 QMKDAERETGAR----------------AKPKRPRVLIVGPTRELAEQVRSVAKAVSHHC 105
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ S + GG V + + +++ TP +++H E+ N+ ++ +V+LDEADTLF
Sbjct: 106 KFSSELIIGGEKFATQRQVLDRSLDVVVGTPGRIIKHCEEGNLFLSNVTHVILDEADTLF 165
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ GFG E+ ++L P L+ N +G Q I+V+A +AE + + +S+ + L+R
Sbjct: 166 EAGFGDEVRRLLRP-----LQKNPEGKQCIVVSATMAEKVAKMVSAELPDLQR 213
>gi|302847799|ref|XP_002955433.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
gi|300259275|gb|EFJ43504.1| hypothetical protein VOLCADRAFT_121417 [Volvox carteri f.
nagariensis]
Length = 554
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 124/220 (56%), Gaps = 20/220 (9%)
Query: 119 QQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG 178
Q + N+A + + S SF++LGL+ ++ A+ MG+ P++IQ + IPA++N
Sbjct: 54 QLTVVNVARHNDWPAASAGP--RSFEQLGLQTPLVSALYGMGITEPTDIQSISIPALMNQ 111
Query: 179 -KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237
+ L+S +GSG+TLAYLLPLVQ Q EE +P +P PR
Sbjct: 112 PGNYFLASHTGSGKTLAYLLPLVQALKQ--EE--------------ASGFVP-RPKRPRV 154
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297
+VL T E DQ +AK + H + ++ N S + PI +L+ATP+ L
Sbjct: 155 LVLGPTRELTDQITGVAKKLCHTVKFRATCANADTSISQQARAMSGPIDVLVATPTRFLH 214
Query: 298 HIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
HI++ NV+ DIR++V+DEADT+F +G+G E++ IL PL+
Sbjct: 215 HIKEGNVAYRDIRWLVVDEADTVFGQGWGEEVAAILAPLR 254
>gi|384253618|gb|EIE27092.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 372
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 118/216 (54%), Gaps = 31/216 (14%)
Query: 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218
M L P+EIQ VL+G V+L+S +GSG+TLAYLLPL
Sbjct: 1 MNLTSPTEIQVSKF--VLHGGDVLLASHTGSGKTLAYLLPL------------------- 39
Query: 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 278
+ + KP PRAI+L T E DQ +AK ISH A+ S+ NGG S +
Sbjct: 40 -----KDGSVQAKPKRPRAIILGPTRELTDQILSVAKSISHKAKFRSACINGGGSMGQQK 94
Query: 279 DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338
+ P+ +L+ TP +++QH E ++ D++YVVLDEADT+FD+GFGPE+ +L P
Sbjct: 95 EALERPLDILVGTPQKLVQHAEKGHLYWGDVQYVVLDEADTMFDKGFGPEVRAVLGP--- 151
Query: 339 SALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
L+S Q TILV A +++ + + L + L+R
Sbjct: 152 --LRSKPQPASTILVVATLSQAVRKLLDTEFPNLKR 185
>gi|303275115|ref|XP_003056857.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461209|gb|EEH58502.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 533
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 19/218 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E GL E+ A + +GL P++IQ V IP +L G + +++S +GSG+TL YLLP++
Sbjct: 95 SFRETGLDDELCAATDALGLETPTDIQSVAIPRILRGGNYMIASHTGSGKTLTYLLPIIH 154
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
++ E + + G +P PR +V+ T E A+Q +AK +SH A
Sbjct: 155 ---RIRREENATVGGGRA-----------RPKRPRVLVVSPTRELAEQVAGVAKSLSHHA 200
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R S++ GG + + +++ TP +++H+++ N+ + +VVLDEADTLF
Sbjct: 201 RFSSALVIGGDKFATQRTQLDRSLDVVVGTPGRLVKHVKEGNMYLGRVTHVVLDEADTLF 260
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
+ GFG +I +L PL+ +G ++V+A +++
Sbjct: 261 EAGFGDDIRVLLGPLQKKP-----EGKSCVIVSATMSD 293
>gi|412989029|emb|CCO15620.1| predicted protein [Bathycoccus prasinos]
Length = 565
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 132/232 (56%), Gaps = 23/232 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAY 195
A +++SF +L A++ +A+E + L P+EIQ + IP++ + G +V ++S +GSG+TLAY
Sbjct: 74 ALLMASFDDLS--ADVREALENLNLQSPTEIQSLAIPSIRDKGGNVCIASHTGSGKTLAY 131
Query: 196 LLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
LLP++ + + E + K PRA+++ T E A+Q F + K
Sbjct: 132 LLPILDALKREEIEADGDRLA--------------KSRRPRALIVSPTRELAEQIFAVTK 177
Query: 256 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315
+SH A++ S + GG +D AP+ +++ TP +++H E++++ ++VVLD
Sbjct: 178 SLSHYAKVSSRLILGGRPFALQKDNLEAPVDVVVGTPGRLVKHCEEKSLFLGSCKFVVLD 237
Query: 316 EADTLFDRGFGPEISKILNPLK------DSALKSNGQGFQTILVTAAIAEML 361
EADTLF+ GFG ++ ++L P+K D +S + +LV+A + + L
Sbjct: 238 EADTLFEAGFGEDVERLLRPVKNRNRGGDDGDESKKKSTTIVLVSATMPDRL 289
>gi|308804231|ref|XP_003079428.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
gi|116057883|emb|CAL54086.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
Length = 327
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 23/235 (9%)
Query: 129 REKSSGSNAEVVSSFQELGLK-AEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSG 186
R + +G +F E GL A +++A+ M + P+EIQ I + + G + ++S
Sbjct: 7 RGRHAGGTG-ATGTFAEAGLADAALMEALRAMEITEPTEIQYKAIGVIGSEGGNAFIASH 65
Query: 187 SGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEES 246
+GSG+TLAYLLP++Q + E +L KP P+ +V C T E
Sbjct: 66 TGSGKTLAYLLPVIQRMKAAEAEAGERLA---------------KPKRPKVVVTCPTREL 110
Query: 247 ADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC 306
A+Q +AK +SH A+ S + GG ++ ++P+ ++I TP +++H+E N+
Sbjct: 111 AEQVAEVAKALSHVAKFSSCLVVGGKRLSTQKERLDSPVDVVIGTPGRLIKHVEQGNLFL 170
Query: 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+ +VLDEADTLF+ GFG E+ ++L P LK+ +G +LV+A + + L
Sbjct: 171 GSVDAMVLDEADTLFEAGFGDEVKRLLRP-----LKARPEGKTCVLVSATMPDRL 220
>gi|452824296|gb|EME31300.1| ATP-dependent RNA helicase isoform 2 [Galdieria sulphuraria]
gi|452824297|gb|EME31301.1| ATP-dependent RNA helicase isoform 1 [Galdieria sulphuraria]
Length = 434
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 116/207 (56%), Gaps = 18/207 (8%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
+S F LG+ E++ ++++ G+ VP++IQ GIP +L G +V + + +GSG+TL +LL
Sbjct: 36 HTISPFASLGIGKELLASLDEQGIHVPTQIQNRGIPKILTGSNVFIGAETGSGKTLTFLL 95
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
PLV++ ++ ++ ++ + P PR +V T E +Q +AK +
Sbjct: 96 PLVELLTRQEKSGRVERL----------------PNRPRCLVFAPTRELGEQICKVAKKL 139
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
SH AR + GG S KA E+ + P +++ATP L+H +N+ ++R++V DEA
Sbjct: 140 SHRARFSCTEIVGGRSRKAEEESLSVPRDLVVATPGRFLEHNRKKNIMLSELRHIVFDEA 199
Query: 318 DTLFDR-GFGPEISK-ILNPLKDSALK 342
D LF R GF E + +LN + + LK
Sbjct: 200 DYLFSRLGFREETKEFLLNVERHAVLK 226
>gi|428185507|gb|EKX54359.1| hypothetical protein GUITHDRAFT_160645 [Guillardia theta CCMP2712]
Length = 589
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 106/198 (53%), Gaps = 20/198 (10%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S F +GL E+ A+ M + P+ IQ +P L G+SV+L + +GSG++LA+LLPLV
Sbjct: 97 SYFSTVGLIPELCAALGDMNINTPTAIQKESLPLSLAGESVLLCAETGSGKSLAFLLPLV 156
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHMAKFIS 258
L+ DE +L + +P PRA+V+ T E Q +AK +S
Sbjct: 157 N------------------RLKVDEFVLGINARPKRPRAVVIVPTRELGSQILGVAKGLS 198
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
A+ S GG SS P+ ++IATP +L HI D ++S D+R+VV DEAD
Sbjct: 199 KHAKFSSLGLLGGASSAMQAKRLEQPVDLVIATPGRLLDHINDNHLSLGDVRFVVADEAD 258
Query: 319 TLFDRGFGPEISKILNPL 336
T+ +GFG E+ KI +
Sbjct: 259 TMAAQGFGEELRKIFEAI 276
>gi|156357705|ref|XP_001624354.1| predicted protein [Nematostella vectensis]
gi|156211127|gb|EDO32254.1| predicted protein [Nematostella vectensis]
Length = 349
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 111/203 (54%), Gaps = 16/203 (7%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V SF LGL+ +++KA++ + + P+ IQ V IP +++ V+ ++ +GSG+TLAYL PL
Sbjct: 1 VYSFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPL 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
V + DEE H GI L+R PRA ++ E A Q AK + H
Sbjct: 61 VHRLRE-DEERH----GILARLKR-----------PRACIVVPARELATQILKTAKSLCH 104
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
AR S GG K + D +P+ +L+ATP +L++ + + D+ ++V+DEADT
Sbjct: 105 HARFRSVGLIGGRKQKWMRDDLESPVDLLVATPGTLLKYRQKDRLFFSDLTHLVIDEADT 164
Query: 320 LFDRGFGPEISKILNPLKDSALK 342
+FD F +IL+ + S L+
Sbjct: 165 MFDASFKSLTMEILHTINVSQLQ 187
>gi|281202418|gb|EFA76621.1| ATP-dependent RNA helicase [Polysphondylium pallidum PN500]
Length = 637
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 139/274 (50%), Gaps = 36/274 (13%)
Query: 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS-VVLSSGSGSGR 191
SGS A +F LGL +++++ +M + +PS IQ + IP +L+ KS V+ S +G+G+
Sbjct: 193 SGSGA----AFARLGLVPTLVQSLREMNITIPSTIQQLAIPEILSKKSDVLFVSQTGTGK 248
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVG--------ITQMLRRDEALLPMK------------ 231
TL+YLLP+ Q Q ++ +L + Q LR P +
Sbjct: 249 TLSYLLPVFQNLKQSEQREQTELEAQQADKQKQLEQQLRDKGIDDPSRFGIDIEASLSQA 308
Query: 232 ----PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS--MENGGVSSKALEDVSNAPI 285
P PRAI+L T E Q + K I+H +L + GG ++K L+D PI
Sbjct: 309 KERMPARPRAIILVPTRELVKQVSQVTKQIAHHHKLSCTGIARGGGENAKHLKDFKERPI 368
Query: 286 GMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD--RGFGPEISKILNPLKDSALKS 343
++++TP ++Q IE++ + + Y+V+DEAD++F +GF ++ KIL P++ +
Sbjct: 369 DIVVSTPGVLIQLIENKQIFFGYLEYLVVDEADSMFTDGKGFDEDMKKILTPIEYRLMNK 428
Query: 344 NGQGFQTI---LVTAAIAEMLGEQLSSLMECLER 374
N ++ I + +A + + L + SL + +
Sbjct: 429 NIPDYKNIYSVICSATLTQQLMSTIKSLFPSISK 462
>gi|237747736|ref|ZP_04578216.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
gi|229379098|gb|EEO29189.1| ATP-dependent RNA helicase [Oxalobacter formigenes OXCC13]
Length = 469
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 108/195 (55%), Gaps = 19/195 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ GL +++KA++ +G P+ IQ IP VL GK V+ ++ +G+G+T Y LP++Q
Sbjct: 17 FEDFGLSPDILKALDDLGYVSPTPIQVQAIPLVLEGKDVMGAAQTGTGKTAGYSLPMLQ- 75
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
+ + + ++ P + HP RA++L T E ADQ F K +
Sbjct: 76 ---------------SLLFSANTSMSPAR--HPVRALILVPTRELADQVFEDVKRYAKYT 118
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ S++ GGV + + A + +LIATP +L H++ +NV+ + +VLDEAD +
Sbjct: 119 PVKSAVVFGGVDISSQTSILRAGVEILIATPGRLLDHVQQKNVNLSHTQILVLDEADRML 178
Query: 322 DRGFGPEISKILNPL 336
D GF P++ +I+N L
Sbjct: 179 DMGFLPDLQRIVNLL 193
>gi|298711833|emb|CBJ32858.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 488
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 117/236 (49%), Gaps = 20/236 (8%)
Query: 134 GSNAEVVS--SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
G A+V+ F LGL +++ A+E+ G PS+IQ IP +LNG ++V ++ +GSG+
Sbjct: 9 GPEADVIEEMDFTGLGLLDDLVDAMEEFGFDSPSKIQRKAIPQILNGGNIVFAASTGSGK 68
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
TLAYL+PL+Q + + I Q R PRAIVL T E A Q
Sbjct: 69 TLAYLMPLIQQLKVEEAQAEEGGESIRQTKR------------PRAIVLVPTRELAMQVL 116
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
+AK +S + S GG + +++ TP +L+H E N Y
Sbjct: 117 EVAKRLSRSCKFSSCGVVGGEDYGKQRQRLAGTVDIVVGTPGRLLKHHEAGNFFMSKANY 176
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGE 363
VV+DE DT+ +GF +I K+ PL + + + F I VTA A+ ++LGE
Sbjct: 177 VVVDEVDTMLTQGFAADIEKLNRPLLANPNRRDMAQF--IFVTATLTKAVRKLLGE 230
>gi|449017358|dbj|BAM80760.1| similar to ATP-dependent RNA helicase [Cyanidioschyzon merolae
strain 10D]
Length = 566
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 117/205 (57%), Gaps = 6/205 (2%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF LG+ E++ A++ +G+ P+ IQ +PA+L G SV++ S +GSG+TLAYLLP
Sbjct: 78 LTSSFASLGVFPELVTALDAVGIQTPTAIQTRAVPAILGGASVIIGSATGSGKTLAYLLP 137
Query: 199 LVQVYSQLDEE--HHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
+VQ +++ +Q +M+RR L +P PRA+V+ T E A+Q + K
Sbjct: 138 IVQRLKSEEQQVVSEMQTEEAAEMMRRGRHPL-RRPGAPRALVITPTRELAEQVLGVCKH 196
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+SH ++ ++ GV + P+ +LI T +LQ ++++ + ++ VVLDE
Sbjct: 197 LSHYIKIRAA-SGLGVRRIVRAQLEEQPVDILITTSGRLLQLLDEQLIRLRSVQTVVLDE 255
Query: 317 ADTLF--DRGFGPEISKILNPLKDS 339
DTL + GF +I +I+ +++
Sbjct: 256 VDTLLLDEGGFHDDIRQIMGKARNT 280
>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
Length = 483
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F L L ++++AV G + IQ IP VL+G+ V+ ++ +G+G+T A+ +PL+Q
Sbjct: 19 FDTLALDPKLLRAVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQ- 77
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPM-HP-RAIVLCTTEESADQGFHMAKFISHC 260
+MLR + M P HP RA+VL T E ADQ K +
Sbjct: 78 ----------------KMLRHENT--SMSPARHPVRALVLAPTRELADQVAANVKTYAKH 119
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
RL S++ GGV K A + +LIATP +L HIE RN + + YVVLDEAD +
Sbjct: 120 TRLRSAVVFGGVDMKPQTAELKAGVEVLIATPGRLLDHIEARNAVLNQVEYVVLDEADRM 179
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +IL+ L
Sbjct: 180 LDIGFLPDLQRILSFL 195
>gi|291230496|ref|XP_002735194.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 28-like
[Saccoglossus kowalevskii]
Length = 543
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 137/269 (50%), Gaps = 36/269 (13%)
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPS 165
NN P+ P+ Q SE +S V+SF + L +I + M + P+
Sbjct: 108 NNTRGNPAFPKKSDQ-----GSEHNES-------VTSFSDFHLHESLINGLASMEIEQPT 155
Query: 166 EIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRD 224
+Q + IP V+ G +V+ ++ +GSG+TL+YLLP++ Q+ ++ ++ VG+
Sbjct: 156 NVQILTIPQVMRGHNVLCAAETGSGKTLSYLLPMLHQMKTETEKLGMKSAVGL------- 208
Query: 225 EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAP 284
PRA+VL E A+Q +A+ +S L +++ GG K L S++P
Sbjct: 209 ----------PRALVLLPARELAEQVLAVARRLSKFTELSANIVEGGRRHKTLHSTSDSP 258
Query: 285 IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS- 343
+ +++ATP +L+ + + D++RYVV+DE DT+ D F + LN LK +++
Sbjct: 259 LDLMVATPGALLKCVTSGWIHMDNVRYVVIDEIDTMLDDSFR---TMTLNLLKRISIRHS 315
Query: 344 --NGQGFQTILVTAAIAEMLGEQLSSLME 370
N + Q I++ A + + E L +++E
Sbjct: 316 ADNTENAQVIMIGATMPKNAEEMLDNVVE 344
>gi|156087551|ref|XP_001611182.1| RNA helicase family protein [Babesia bovis]
gi|154798436|gb|EDO07614.1| RNA helicase family protein [Babesia bovis]
Length = 1100
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 124/241 (51%), Gaps = 45/241 (18%)
Query: 138 EVVSSFQELGLKAEMIKA---------------VEKMGL-FVPSEIQCVGIPAVLNGKS- 180
E ++ +Q LGLK ++ +A V++ L +P++IQ + I +L ++
Sbjct: 461 EYINDWQALGLKPQIAQAAVAWIRKTLLDAIGKVDQRNLEIIPTDIQTMAIRHLLKHRND 520
Query: 181 VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240
++++S + SG+TLAYLLP++Q L++ E L P PRA+VL
Sbjct: 521 ILIASNAASGKTLAYLLPIIQ------------------KLKKHETLKLRHPNAPRALVL 562
Query: 241 CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE 300
E ADQ H+ K + H ++ S + +GGV D + +++ATP +L+
Sbjct: 563 VPNRELADQILHVVKGLGHVVKISSEIISGGVYKGIQRDDMKRLVDVVVATPDRLLKM-- 620
Query: 301 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360
+V ++Y+VLDEADTL + GF P+++K+L+ +K Q FQ I V A+ +
Sbjct: 621 KNHVKLHQLQYLVLDEADTLLNEGFWPDVAKVLDLIK--------QPFQLIQVAASSKYL 672
Query: 361 L 361
L
Sbjct: 673 L 673
>gi|332289731|ref|YP_004420583.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
gi|330432627|gb|AEC17686.1| ATP-dependent RNA helicase SrmB [Gallibacterium anatis UMN179]
Length = 447
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 33/243 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S+F E L +++KA+ K GL P+ IQ IPA ++G V+ SS +G+G+T+A+LLP
Sbjct: 3 ISNFDEFDLDPQLLKALAKKGLNRPTAIQIEAIPAAMDGHDVLGSSPTGTGKTIAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 IQ---------HL-----LDFPRR-------KPGAPRVLVLTPTRELAMQVAEQAQQLAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GGV+ + ++ N M+IATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTSLSIATITGGVAYQNHGEIFNKNQDMVIATPGRLLQYIQEENFDCRAVEILIFDEADR 161
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGK 379
+ GFG + +I A ++ + QT+L +A + GE+L+S + L DN +
Sbjct: 162 MLQMGFGQDAERI-------AAETRWRK-QTMLFSATLE---GEELNSFAQRL-LDNPVE 209
Query: 380 VTA 382
V A
Sbjct: 210 VNA 212
>gi|374288894|ref|YP_005035979.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
[Bacteriovorax marinus SJ]
gi|301167435|emb|CBW27017.1| putative cold-shock DeaD-box protein A (ATP-dependent RNA helicase)
[Bacteriovorax marinus SJ]
Length = 440
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 114/198 (57%), Gaps = 19/198 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
++++ F++L ++++K ++ G P+ +Q GIP +L +S+ L +G+G+TL+Y
Sbjct: 12 GKLMAKFEDLLSNSDLLKYIQDQGFSAPTPVQQKGIPLLLKRESLSLLGKTGTGKTLSYA 71
Query: 197 LPLVQVYSQLDEEHHLQL-VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
LPLV+ + DE +++Q+ VG PRA+V+ T+E Q F + K
Sbjct: 72 LPLVECLKE-DESNNVQVQVG-----------------SPRALVILPTKELTSQVFQVFK 113
Query: 256 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315
ISH A+L GG + +++S++ I +L+ P ++Q +E + ++ D++Y++LD
Sbjct: 114 GISHFAKLRVRQLLGGEKGQKSKELSSSSIDILVTGPGRLVQMVEKKELNLLDVKYLILD 173
Query: 316 EADTLFDRGFGPEISKIL 333
EADTL D GF +I K+
Sbjct: 174 EADTLLDMGFFKDIQKMW 191
>gi|330812848|ref|XP_003291329.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
gi|325078509|gb|EGC32157.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
Length = 1031
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 119/222 (53%), Gaps = 33/222 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL +++++ K G VP+ IQ IP +L G VV + +GSG+T A+++P+VQ+
Sbjct: 221 FQSMGLNKLLLRSILKKGFNVPTPIQRRTIPLILEGNDVVGMARTGSGKTGAFVIPMVQM 280
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ H +VG+ R+++L T E A Q F + K +
Sbjct: 281 LQE-----HSTVVGV------------------RSVILSPTRELAIQTFKVVKDFTQGTN 317
Query: 263 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L + + GG S + +D++ P ++IATP ++ H+++ +S ++Y+V DEAD LF
Sbjct: 318 LRTILIVGGDSMEEQYDDLARNP-DIIIATPGRLMHHLQETGMSLSKVKYIVFDEADRLF 376
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
+ GF ++++IL+ L ++ QT+L +A + +L E
Sbjct: 377 EMGFNEQLTEILSKLSENR--------QTLLFSATLPSLLVE 410
>gi|224369411|ref|YP_002603575.1| protein RhlE2 [Desulfobacterium autotrophicum HRM2]
gi|223692128|gb|ACN15411.1| RhlE2 [Desulfobacterium autotrophicum HRM2]
Length = 460
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 104/193 (53%), Gaps = 23/193 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ELGL+AE+IKAV+ G P+ IQ IPA+LNG+ ++ + +G+G+T A+ LP+V+
Sbjct: 2 SFEELGLRAELIKAVKTKGYIEPTPIQIRVIPAILNGQDILARAQTGTGKTDAFALPIVE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ ++ + H RR HPRA+VL T E A Q K +
Sbjct: 62 ILAR-GKAH-----------RR----------HPRALVLTPTRELALQVGESIKAYARRV 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE-DRNVSCDDIRYVVLDEADTL 320
L ++ GGV+ D + +L+ATP +L +R+V I ++V DEAD +
Sbjct: 100 SLRCTVVYGGVNVNPQIDRLKRGVDILVATPGRLLDLAAFNRDVKLSKIEFLVFDEADRM 159
Query: 321 FDRGFGPEISKIL 333
D GF EIS+IL
Sbjct: 160 LDLGFSDEISQIL 172
>gi|27366679|ref|NP_762206.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|37676391|ref|NP_936787.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|320158571|ref|YP_004190949.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
gi|27358245|gb|AAO07196.1| ATP-dependent RNA helicase [Vibrio vulnificus CMCP6]
gi|37200933|dbj|BAC96757.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
gi|319933883|gb|ADV88746.1| ATP-dependent RNA helicase [Vibrio vulnificus MO6-24/O]
Length = 418
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 19/195 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ ++F ELGL + + + ++G P+ IQ IP +L G+ V+ ++ +G+G+T AY LP
Sbjct: 1 MTNTFIELGLDSSLSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
L+Q+ S+ E P HPRA++L T E A Q F K +
Sbjct: 61 LIQMLSRQSREE-------------------TAPKHPRALILAPTRELAQQVFDNLKQYA 101
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L GG S + ++ + +LIATP +L H+ + S + ++ +VLDEAD
Sbjct: 102 QHTELAIVTVYGGTSIRVQQEQLAKGVDILIATPGRLLDHLFTKKTSLNQLQMLVLDEAD 161
Query: 319 TLFDRGFGPEISKIL 333
+ D GF P+I +I+
Sbjct: 162 RMLDMGFLPDIQRIM 176
>gi|389873083|ref|YP_006380502.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
gi|388538332|gb|AFK63520.1| ATP-dependent RNA helicase [Advenella kashmirensis WT001]
Length = 476
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 19/193 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF E+GL +++KAV G P+ IQ +P +++G+ ++ ++ +G+G+T A+ LPL+
Sbjct: 17 SFTEVGLHPDLLKAVMASGYTKPTPIQEQAMPLIMDGRDIMGAAQTGTGKTAAFTLPLL- 75
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
H L M + ++ P + HP RA++L T E ADQ K SH
Sbjct: 76 --------HRL-------MPMANSSMSPAR--HPVRALILAPTRELADQVAESVKRYSHS 118
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ L ++ GGV A D +LIATP +L HIE +NVS + +VLDEAD +
Sbjct: 119 SPLRVAVVFGGVDMNAQRDQLRKGCELLIATPGRLLDHIEQKNVSLSQVSVLVLDEADRM 178
Query: 321 FDRGFGPEISKIL 333
D GF P++ +I+
Sbjct: 179 LDMGFLPDLERIV 191
>gi|237745550|ref|ZP_04576030.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
gi|229376901|gb|EEO26992.1| ATP-dependent RNA helicase [Oxalobacter formigenes HOxBLS]
Length = 470
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 134/271 (49%), Gaps = 34/271 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + GL +E++KA++ +G P+ IQ IP +L GK V+ ++ +G+G+T Y LP++Q
Sbjct: 17 FGDFGLASEILKALDDLGYSSPTPIQSQAIPVILEGKDVMGAAQTGTGKTAGYSLPVLQ- 75
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
+ + + ++ P + HP RA++L T E ADQ + + +
Sbjct: 76 ---------------SLLYYANASMSPAR--HPVRALILVPTRELADQVYEDVRKYAKYT 118
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L +++ GGV + A +LIATP +L HI+ +NV+ +VLDEAD +
Sbjct: 119 SLRTAVVFGGVDMSGQTGILRAGAEILIATPGRLLDHIQQKNVNLGQTGILVLDEADRML 178
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDN 376
D GF P++ +I+N L Q +L +A + + + +S ++ + R N
Sbjct: 179 DMGFLPDLQRIVNLLPKKR--------QNLLFSATFSSEIRKLANSFLDRPVSVEVARQN 230
Query: 377 --AGKVTAMLLEMDQAEVFDLTESQDALKKK 405
A VT + +D+A+ D E L K+
Sbjct: 231 ATADNVTQTVYRIDEADKNDAVEYLLRLHKR 261
>gi|449690217|ref|XP_002156431.2| PREDICTED: probable ATP-dependent RNA helicase DDX56-like [Hydra
magnipapillata]
Length = 534
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 38/226 (16%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++S+F + + ++KA+ K+G PSEIQ IP L GK +++ + +GSG+T AYL+P
Sbjct: 1 MISNFTDFDIDDRLVKAISKLGWATPSEIQKRAIPPALEGKDIIIRAKTGSGKTAAYLIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFI 257
L+Q ++L+ E+ P ++VL ++E Q + A
Sbjct: 61 LIQ-----------------KILKNKESNKP----KTLSVVLVPSKELCKQSYRNALDLT 99
Query: 258 SHCARLDSSMENGGV---SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD-IRYVV 313
S+C++L S ++ G SS +L ++NA I LI+TPS++L HI ++ ++ D + Y++
Sbjct: 100 SYCSKLVSVVDLGNSTVQSSSSL--INNADI--LISTPSKILAHINNKTINLKDFLDYLI 155
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
LDEAD +F G+ ++ I L + +Q +LV+A I+E
Sbjct: 156 LDEADMMFSYGYEQDLKTITTSL--------PKIYQALLVSATISE 193
>gi|443312790|ref|ZP_21042405.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442777246|gb|ELR87524.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 432
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 33/242 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E++KA+ + G P+ IQ IPA+L GK V S+ +G+G+T + LPL
Sbjct: 2 TFSHLGLSQELLKAISEQGYTQPTPIQKQAIPAILQGKDVFASAQTGTGKTAGFTLPL-- 59
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
LQL+ T + D A PRA++L T E A Q +
Sbjct: 60 ----------LQLLNNTSANKGDRA--------PRALILLPTRELAQQVGDSVRTYGKYL 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV+ + + +++ATP +L H+E +N++ I +VLDE D +
Sbjct: 102 SLRSAVIYGGVAIRPQTQTLRQGVDIVVATPGRLLDHLEQKNLNLSQIEILVLDECDRML 161
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSS--LMECLERD 375
D GF +I KIL L S+ QT++ +A I ++ LSS L+E R+
Sbjct: 162 DMGFIHDIRKILAKLPSSSR-------QTLMFSATFSTTIRQLANTLLSSPTLIEVAARN 214
Query: 376 NA 377
A
Sbjct: 215 TA 216
>gi|449664058|ref|XP_002155207.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Hydra
magnipapillata]
Length = 473
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 126/278 (45%), Gaps = 37/278 (13%)
Query: 94 FKLRKLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVV------------- 140
FKL + TN S + ++ L ++ + EK +EVV
Sbjct: 10 FKLMHMALQTTTN------SVAKSQKTALKQVSKKNEKLLDRGSEVVIKAKNINVHHGNN 63
Query: 141 -SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
S+F L L+++++ ++ + + P+ IQ +GIP VL K+V ++ +GSG+TL Y+ P+
Sbjct: 64 QSTFSTLNLRSDLLDGLQNIHITQPTIIQMLGIPLVLQKKNVFCAAQTGSGKTLVYVTPI 123
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q +L E +G + PR +VL T E A Q + K SH
Sbjct: 124 IQ---KLGNEVEAGFIG--------------RLSRPRVLVLSPTRELASQILKVFKHFSH 166
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
R S G K +D + +++ TPS +L+ + ++ D+RYVV DEADT
Sbjct: 167 YCRFRSVGVIGQNQKKWAKDYVKGLVDVVVGTPSTILKWNQKGLLNFSDVRYVVFDEADT 226
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
L D F S+ L L + NG Q IL A +
Sbjct: 227 LMDDNFRNTTSEFLKLLDCESDSKNGTNIQFILTAATL 264
>gi|328865714|gb|EGG14100.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 1076
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 40/244 (16%)
Query: 121 QLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS 180
+L++I ER+K G FQ + L + KAV K G P+ IQ + IP +L G+
Sbjct: 255 RLTDIQDERKKKMGG-------FQGMDLHKFLFKAVMKKGFKQPTPIQRLTIPLILEGQD 307
Query: 181 VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240
VV + +GSG+T A+++P++Q +Q H VG RAI+L
Sbjct: 308 VVGMARTGSGKTAAFVIPMIQKLAQ-----HSHKVG------------------ARAIIL 344
Query: 241 CTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHI 299
T E A Q + + K +S + L S + GG + + +++ P ++IATP ++ H+
Sbjct: 345 SPTRELALQTYRVVKELSSGSDLRSCVIVGGDNMADQFTELARNP-DIIIATPGRLVHHL 403
Query: 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
+ N+ ++Y+V DEAD LF+ GF ++ +I+ L S QT+L +A +
Sbjct: 404 TEVNMGLHTVQYIVFDEADRLFEMGFADQLQEIITKLSPSR--------QTLLFSATLPS 455
Query: 360 MLGE 363
ML E
Sbjct: 456 MLAE 459
>gi|319941925|ref|ZP_08016246.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Sutterella wadsworthensis 3_1_45B]
gi|319804578|gb|EFW01448.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Sutterella wadsworthensis 3_1_45B]
Length = 503
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 25/198 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+SSF + GL ++ A+E+MG P+ IQ IP VL G V+ ++ +G+G+T Y LPL
Sbjct: 27 MSSFDQFGLDPRILSAIERMGYTQPTPIQEKAIPVVLMGGDVMGAAQTGTGKTAGYGLPL 86
Query: 200 VQVYSQLDEEHHLQLVGITQML-RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
I ++L + + ++ P + HP RA++L T E ADQ +
Sbjct: 87 -----------------IARILPKANTSMSPAR--HPVRALILAPTRELADQVSD--NLV 125
Query: 258 SHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315
+CA L + + GGV + D+ + +L ATP +L H++ R+V+ + VVLD
Sbjct: 126 KYCADTPLRAGVVYGGVDIRPQADMLRRGVEILTATPGRLLDHVQQRSVNLSQVEIVVLD 185
Query: 316 EADTLFDRGFGPEISKIL 333
EAD + D GF P+IS+IL
Sbjct: 186 EADRMLDMGFLPDISRIL 203
>gi|410630628|ref|ZP_11341316.1| ATP-dependent RNA helicase rhlE [Glaciecola arctica BSs20135]
gi|410149857|dbj|GAC18183.1| ATP-dependent RNA helicase rhlE [Glaciecola arctica BSs20135]
Length = 419
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 119/238 (50%), Gaps = 26/238 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++L L E+I AV +G P+ IQ + IP +NGK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLELDDELIHAVTDLGYKEPTSIQSLVIPEAMNGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA- 261
+ RR +P R ++L T E A Q F AK IS A
Sbjct: 62 --------------LLDYPRR-------QPGSTRILILTPTRELALQIFEQAKAISKYAP 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ + GG++ D+ + + +L+ATP + +HIE + C DI ++LDEAD +
Sbjct: 101 HITCGVITGGINYGTDRDLLESNLDILVATPGRLFEHIEKESFDCRDIECLILDEADRML 160
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGK 379
D GF P +++I ++ + F L + IA E L+ +E LE D++ K
Sbjct: 161 DMGFSPIVNQI---AAEARWRKQTMLFSATLEGSGIARFSDELLNDPVE-LEADSSRK 214
>gi|145346658|ref|XP_001417802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578030|gb|ABO96095.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 436
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 108/204 (52%), Gaps = 21/204 (10%)
Query: 159 MGLFVPSEIQCVGIPAVLNGK-SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGI 217
M + P+EIQ I + G + ++S +GSG+TLAYLLP++Q + +L
Sbjct: 1 MNIVEPTEIQTKAIDVIGRGAGNAFVASHTGSGKTLAYLLPVIQRMKAAEIAAGDRLA-- 58
Query: 218 TQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 277
KP P+ +V C T E A+Q +AK +SH A+ S + GG
Sbjct: 59 -------------KPKRPKVVVACPTRELAEQVAEVAKALSHVAKFSSYLVVGGRRLGTQ 105
Query: 278 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ ++ I ++I TP +++H++ N+ + +VLDEADTLF+ GFG E+ ++L P
Sbjct: 106 KERLDSAIDVVIGTPGRLIKHVDQGNLFLGSVDAMVLDEADTLFEAGFGDEVKRLLRP-- 163
Query: 338 DSALKSNGQGFQTILVTAAIAEML 361
LK+ +G +LV+A + + L
Sbjct: 164 ---LKARPEGKTCVLVSATMPDRL 184
>gi|388567718|ref|ZP_10154148.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
gi|388265047|gb|EIK90607.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
Length = 482
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 106/200 (53%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SF EL L + KAV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTQSFSELNLAPALAKAVAEMGYETMTPIQAQAIPQVLTGRDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q ++L+ + A P + HP RA+VL T E ADQ K
Sbjct: 61 LLQ-----------------RLLKHENASTSPAR--HPVRALVLLPTRELADQVAEQVKL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDE
Sbjct: 102 YAKYTQLRSTVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +IL+ L
Sbjct: 162 ADRMLDIGFLPDLQRILSYL 181
>gi|348681955|gb|EGZ21771.1| hypothetical protein PHYSODRAFT_350808 [Phytophthora sojae]
Length = 491
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 16/222 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SFQ+LG+ A ++ + +M + P+ IQ IPA+L V+ ++ +G+G+TLAYL+P+V+
Sbjct: 35 SFQDLGVDARIVAGLREMKITTPTGIQSKSIPAILERHDVLCAAQTGTGKTLAYLVPVVE 94
Query: 202 VY----SQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
+ + +EH + G+T E +L PRA+VL + E A Q +AK +
Sbjct: 95 QLLRKEAAMQKEHEAK--GLTGPA---EVVLG----RPRALVLLPSRELALQVASVAKQL 145
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
SH A+ S G + + + ++I TP V + I + I VV+DEA
Sbjct: 146 SHSAKFASCTITSGERKSIQQRNTARRLDLIIGTPGRVAKCISKGDFFVSRIDTVVVDEA 205
Query: 318 DTLFDR--GFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
DTLFD GF E+ +L P++ SA K N Q Q +L A I
Sbjct: 206 DTLFDAKMGFRKELDAVLGPIQASAAKRN-QPLQMVLAAATI 246
>gi|303257750|ref|ZP_07343762.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
1_1_47]
gi|331001188|ref|ZP_08324815.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
YIT 11859]
gi|302859720|gb|EFL82799.1| putative ATP-dependent RNA helicase RhlE [Burkholderiales bacterium
1_1_47]
gi|329569120|gb|EGG50912.1| ATP-dependent RNA helicase RhlE [Parasutterella excrementihominis
YIT 11859]
Length = 458
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 19/196 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++ GL ++ A+++MG P+ IQC IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 6 NFEQFGLAPNLLSAIKRMGYTKPTAIQCKAIPVVLQGRDVMGAAQTGTGKTASFGLPVLQ 65
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
L L + R HP R ++L T E ADQ +
Sbjct: 66 --------KLLPLANTSTSPAR----------HPVRVLILSPTRELADQTAEALSNYAAD 107
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ + GGV K + + +LIATP +L H+E RN + + V+LDEAD +
Sbjct: 108 TPIRIGVVYGGVDIKPQAEALRKGVEILIATPGRLLDHLEQRNTNLNQSGIVILDEADRM 167
Query: 321 FDRGFGPEISKILNPL 336
D GF P+IS+ILN L
Sbjct: 168 LDMGFLPDISRILNAL 183
>gi|408419813|ref|YP_006761227.1| ATP-dependent RNA helicase RhlE2 [Desulfobacula toluolica Tol2]
gi|405107026|emb|CCK80523.1| RhlE2: predicted ATP-dependent RNA helicase [Desulfobacula
toluolica Tol2]
Length = 439
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 22/192 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL+ E++KA + G P+ IQ IPA+LNG+ ++ + +G+G+T A+ LPL++
Sbjct: 2 SFDELGLRVELLKASKSKGYTAPTPIQTRAIPAILNGRDILARAQTGTGKTDAFALPLIE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S+ ++ RR +PRA+VL T E A Q K +
Sbjct: 62 ILSR------------KKVKRR----------YPRALVLTPTRELALQVGESIKAYARRV 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ ++ GGV+ D I +L+ATP +L R++ I ++V DEAD +
Sbjct: 100 SIRCTVVYGGVNITPQIDRLKRGIDILVATPGRLLDLASHRDLDLSRIEFLVFDEADRML 159
Query: 322 DRGFGPEISKIL 333
D GF EIS+IL
Sbjct: 160 DLGFSEEISEIL 171
>gi|260223394|emb|CBA33917.1| Putative ATP-dependent RNA helicase rhlE [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 520
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 19/196 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q
Sbjct: 23 AFAQLQLADPLARAVAEMGYTTMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFALPLLQ 82
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
M + + P + HP RA+VL T E ADQ K +
Sbjct: 83 RL----------------MKHENASTSPAR--HPVRALVLLPTRELADQVAQQVKLYAKY 124
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GG+ K A + +L+ATP +L HIE +N + + YVVLDEAD +
Sbjct: 125 TNLRSAVVFGGMDMKPQTLELKAGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRM 184
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +IL+ L
Sbjct: 185 LDIGFLPDLQRILSYL 200
>gi|66800711|ref|XP_629281.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
gi|74996456|sp|Q54CD8.1|DDX54_DICDI RecName: Full=ATP-dependent RNA helicase ddx54; AltName:
Full=ATP-dependent RNA helicase helA; AltName: Full=DEAD
box protein 54
gi|60462646|gb|EAL60848.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
Length = 1091
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 113/220 (51%), Gaps = 33/220 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ + L ++KA+ K G VP+ IQ IP +L+G +V + +GSG+T A+++P++Q
Sbjct: 232 FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQK 291
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
H VG+ RA++L T E A Q F + K S +
Sbjct: 292 LGD-----HSTTVGV------------------RAVILSPTRELAIQTFKVVKDFSQGTQ 328
Query: 263 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L + + GG S D++ P ++IATP ++ H+ + +S ++Y+V DEAD LF
Sbjct: 329 LRTILIVGGDSMEDQFTDLARNP-DIIIATPGRLMHHLLETGMSLSKVQYIVFDEADRLF 387
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+ GF ++++IL+ L ++ QT+L +A + +L
Sbjct: 388 EMGFNEQLTEILSKLSENR--------QTLLFSATLPSLL 419
>gi|417841786|ref|ZP_12487886.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M19501]
gi|341948555|gb|EGT75180.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M19501]
Length = 439
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 32/236 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
+ GFG + KI A ++ + QT+L +A + GE L E L D
Sbjct: 162 MLQMGFGQDAEKI-------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL E+++AV + G P+ IQ IP VL+G+ V+ + +G+G+T + LPL+Q
Sbjct: 2 SFADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
L R + HP RA++L T E A Q F K S
Sbjct: 62 ------------------RLARHASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKY 103
Query: 261 ARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S+ GGV K ++D+ N I +++ATP +L H++ + + + +VLDEAD
Sbjct: 104 VPLRSTCIYGGVDMKPQIQDLRNG-IEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADR 162
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +IL+
Sbjct: 163 MLDMGFIPDIRRILD 177
>gi|239816848|ref|YP_002945758.1| DEAD/DEAH box helicase domain-containing protein [Variovorax
paradoxus S110]
gi|239803425|gb|ACS20492.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus S110]
Length = 486
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 106/200 (53%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL+G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q +ML+ + A P + HP RA+VL T E ADQ K
Sbjct: 61 LLQ-----------------RMLKHENASTSPAR--HPVRALVLLPTRELADQVAQQVKL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDE
Sbjct: 102 YAKYTNLRSTVVFGGIDMKPQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +IL+ L
Sbjct: 162 ADRMLDIGFLPDLQRILSYL 181
>gi|418528845|ref|ZP_13094787.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
gi|371454106|gb|EHN67116.1| hypothetical protein CTATCC11996_04137 [Comamonas testosteroni ATCC
11996]
Length = 473
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 106/203 (52%), Gaps = 21/203 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q +++R + A P + HP RA+VL T E ADQ
Sbjct: 61 LLQ-----------------RLMRHENASASPAR--HPVRALVLLPTRELADQVAQQIAL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ +L S++ GG+ K + +L+ATP +L HIE +NV + + YVVLDE
Sbjct: 102 YAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPLKDS 339
AD + D GF P++ +IL+ L S
Sbjct: 162 ADRMLDIGFLPDLQRILSYLPKS 184
>gi|319795121|ref|YP_004156761.1| dead/deah box helicase domain-containing protein [Variovorax
paradoxus EPS]
gi|315597584|gb|ADU38650.1| DEAD/DEAH box helicase domain protein [Variovorax paradoxus EPS]
Length = 496
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 106/200 (53%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL+G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q +ML+ + A P + HP RA+VL T E ADQ K
Sbjct: 61 LLQ-----------------RMLKHENASTSPAR--HPVRALVLLPTRELADQVAQQVKL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDE
Sbjct: 102 YAKYTNLRSTVVFGGIDMKPQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +IL+ L
Sbjct: 162 ADRMLDIGFLPDLQRILSYL 181
>gi|124265824|ref|YP_001019828.1| ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1]
gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
PM1]
Length = 494
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 114/218 (52%), Gaps = 29/218 (13%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F L L ++++AV + G + + IQ IP VL G+ V+ ++ +G+G+T A+ LPL+Q
Sbjct: 21 FDTLALDPKLLRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQ- 79
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
+ML+ + + P + HP RA+VL T E ADQ + K S
Sbjct: 80 ----------------KMLKHESSSTSPAR--HPVRALVLAPTRELADQVANNVKTYSKH 121
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+L +++ GG+ K + +LIATP +L HIE +N S + YVVLDEAD +
Sbjct: 122 TQLRATVVFGGIDMKPQTAELKRGVEVLIATPGRLLDHIEAKNCSLSQVEYVVLDEADRM 181
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
D GF P++ +IL+ L S QT+L +A +
Sbjct: 182 LDIGFLPDLQRILSYLPKSR--------QTLLFSATFS 211
>gi|148827621|ref|YP_001292374.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittGG]
gi|148718863|gb|ABQ99990.1| ATP-dependent RNA helicase [Haemophilus influenzae PittGG]
Length = 439
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEARDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|145634582|ref|ZP_01790291.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
gi|229844418|ref|ZP_04464558.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
gi|145268127|gb|EDK08122.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
gi|229812667|gb|EEP48356.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 6P18H1]
Length = 439
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGSPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|427710423|ref|YP_007052800.1| DEAD/DEAH box helicase [Nostoc sp. PCC 7107]
gi|427362928|gb|AFY45650.1| DEAD/DEAH box helicase domain protein [Nostoc sp. PCC 7107]
Length = 476
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 24/229 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I+AV ++G P+ IQ IPAVL+G+ ++ + +G+G+T ++ LPL+Q
Sbjct: 42 SFSHLGLSNEIIRAVTELGYTKPTPIQMQAIPAVLSGRDLLAGAQTGTGKTASFTLPLLQ 101
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L E L+ P+ RA++L T E A Q + S
Sbjct: 102 ---KLSSEKSLKSTSY--------ECFPI-----RALILTPTRELAAQVELNVREYSKYL 145
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L++ GGVS + + + +L+ATP +L H++ R V+ ++ ++VLDEAD +
Sbjct: 146 KLNTMAMFGGVSINPQKKLLRGRVDILVATPGRLLDHVQQRTVNLSNVEFLVLDEADRML 205
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
D GF +I +IL+ L Q +L A ++ + E + L++
Sbjct: 206 DMGFIRDIRRILSLLPKQR--------QNLLFFATFSDKIKELATGLLD 246
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL A+++KAV + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 18 TFDQFGLSADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
+ + + P + HP RA++L T E ADQ + S
Sbjct: 78 RL----------------LPSANTSASPAR--HPVRALMLTPTRELADQVAANVQTYSKH 119
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GGV D + +LIATP +L H++ + V+ ++ +VLDEAD +
Sbjct: 120 TPLRSTVVFGGVDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRM 179
Query: 321 FDRGFGPEISKILN 334
D GF P++ +ILN
Sbjct: 180 LDMGFLPDLQRILN 193
>gi|342903495|ref|ZP_08725306.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M21621]
gi|341955599|gb|EGT82055.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M21621]
Length = 441
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 32/236 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
+ GFG + KI A ++ + QT+L +A + GE L E L D
Sbjct: 162 MLQMGFGQDAEKI-------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|301623430|ref|XP_002941020.1| PREDICTED: probable ATP-dependent RNA helicase DDX28-like [Xenopus
(Silurana) tropicalis]
Length = 522
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 146/309 (47%), Gaps = 32/309 (10%)
Query: 60 PVIR-PLSTKTTTPTEETQQRVPSK-PEKDSFILENFKLRKLNGSA--KTNNPENKPSPP 115
PVIR P ++ Q PS P + +L K R+LN A EN+P
Sbjct: 27 PVIRLPCRSQLRLDHLRKQPSAPSVLPTRTGKLLVLSKRRELNQYAAETIGRWENRPLVS 86
Query: 116 QPEQQQLS---NIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI 172
Q + S + +++ G ++ +FQ LGL E++ + +G+ P+ +Q I
Sbjct: 87 QGWKHNASRGDHFIILQQQGHGPTPDISCNFQSLGLDEELVSILNSIGITSPTWVQIKSI 146
Query: 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232
+L GK+++ ++ +GSG+TLAYLLP++ + H
Sbjct: 147 RNLLQGKNILSTAETGSGKTLAYLLPILHELKRSKRSAHSSF------------------ 188
Query: 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME--NGGVSSKALED-VSNAPIGMLI 289
PR +VL + E A Q +A+ + CA+L +++ GG+ A+E + PI +L+
Sbjct: 189 --PRCLVLVPSRELAGQIVSVAQ--NFCAKLQLTVQFVGGGLGQTAVESKLGRGPIDILV 244
Query: 290 ATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQ 349
ATP + + ++ +S +++ YVVLDE DTL D F IL +K ++ S+ QG +
Sbjct: 245 ATPGALWKALQKDIISLNELCYVVLDEVDTLIDHTFLKLTGDILKHIKIASSPSDLQGSE 304
Query: 350 TILVTAAIA 358
+ A I
Sbjct: 305 KMAQLAVIG 313
>gi|73540602|ref|YP_295122.1| helicase [Ralstonia eutropha JMP134]
gi|72118015|gb|AAZ60278.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 537
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 106/201 (52%), Gaps = 33/201 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ GL A +++A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP++Q
Sbjct: 55 TFESFGLDARILRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 114
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HM 253
LLPM HP RA++L T E ADQ + ++
Sbjct: 115 ------------------------RLLPMASASASPARHPVRALMLTPTRELADQVYDNV 150
Query: 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
A++ H L S++ GGV D + +L+ATP +L H++ ++V+ ++ +V
Sbjct: 151 ARYAKHTD-LRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLV 209
Query: 314 LDEADTLFDRGFGPEISKILN 334
LDEAD + D GF P++ +I+N
Sbjct: 210 LDEADRMLDMGFLPDLQRIIN 230
>gi|148825298|ref|YP_001290051.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae PittEE]
gi|148715458|gb|ABQ97668.1| ATP-dependent RNA helicase [Haemophilus influenzae PittEE]
Length = 439
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 32/236 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
+ GFG + KI A ++ + QT+L +A + GE L E L D
Sbjct: 162 MLQMGFGQDAEKI-------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|417839686|ref|ZP_12485859.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M19107]
gi|341952052|gb|EGT78595.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M19107]
Length = 441
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|428310822|ref|YP_007121799.1| DNA/RNA helicase [Microcoleus sp. PCC 7113]
gi|428252434|gb|AFZ18393.1| DNA/RNA helicase, superfamily II [Microcoleus sp. PCC 7113]
Length = 433
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 113/231 (48%), Gaps = 32/231 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL ++++AV G P+ IQ IPAVL GK V S+ +G+G+T + LPL
Sbjct: 2 TFRNLGLSTDLLRAVADSGYTEPTPIQQQAIPAVLQGKDVFASAQTGTGKTAGFTLPL-- 59
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH--PRAIVLCTTEESADQGFHMAKFISH 259
LQL+ T P K +H PRA++L T E ADQ K
Sbjct: 60 ----------LQLLNTTN---------PNK-VHRTPRALILTPTRELADQVNDSVKTYGK 99
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S++ GGV KA + +L+ATP +L H+ + V + +VLDE D
Sbjct: 100 YLSLRSAVVYGGVGIKAQIQTLRRGVDILVATPGRLLDHVGQKTVDLSQVEILVLDECDR 159
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
+ D GF +I KIL L S QT++ +A ++ + + ++L++
Sbjct: 160 MLDMGFIRDIRKILAILPSSR--------QTLMFSATFSKPIQQLANTLLK 202
>gi|319898057|ref|YP_004136254.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
gi|317433563|emb|CBY81947.1| ATP-dependent RNA helicase [Haemophilus influenzae F3031]
Length = 439
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 32/236 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
+ GFG + KI A ++ + QT+L +A + GE L E L D
Sbjct: 162 MLQMGFGQDAEKI-------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|221065648|ref|ZP_03541753.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220710671|gb|EED66039.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 473
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 106/203 (52%), Gaps = 21/203 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLHLAEPLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q +++R + A P + HP RA+VL T E ADQ
Sbjct: 61 LLQ-----------------RLMRHENASASPAR--HPVRALVLLPTRELADQVAQQIAL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ +L S++ GG+ K + +L+ATP +L HIE +NV + + YVVLDE
Sbjct: 102 YAKHTKLRSTVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPLKDS 339
AD + D GF P++ +IL+ L S
Sbjct: 162 ADRMLDIGFLPDLQRILSYLPKS 184
>gi|417843573|ref|ZP_12489646.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M21127]
gi|419838690|ref|ZP_14362111.1| DEAD/DEAH box helicase [Haemophilus haemolyticus HK386]
gi|341949208|gb|EGT75814.1| ATP-dependent RNA helicase srmB [Haemophilus haemolyticus M21127]
gi|386910147|gb|EIJ74808.1| DEAD/DEAH box helicase [Haemophilus haemolyticus HK386]
Length = 441
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|398811913|ref|ZP_10570698.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
gi|398079456|gb|EJL70309.1| DNA/RNA helicase, superfamily II [Variovorax sp. CF313]
Length = 487
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 106/200 (53%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL+G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLMLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q +ML+ + A P + HP RA+VL T E ADQ K
Sbjct: 61 LLQ-----------------RMLKHENASTSPAR--HPVRALVLLPTRELADQVAQQVKL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDE
Sbjct: 102 YAKYTNLRSTVVFGGIDMKPQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +IL+ L
Sbjct: 162 ADRMLDIGFLPDLQRILSYL 181
>gi|378696603|ref|YP_005178561.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
gi|301169122|emb|CBW28719.1| ATP-dependent RNA helicase [Haemophilus influenzae 10810]
Length = 439
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|383759970|ref|YP_005438956.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381380640|dbj|BAL97457.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 485
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 146 LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQ 205
L L ++++AV G + IQ IP VL G+ V+ ++ +G+G+T A+ +PL+Q
Sbjct: 31 LPLDPKLLRAVADAGYTSMTPIQAKAIPIVLAGRDVMGAAQTGTGKTAAFTIPLLQ---- 86
Query: 206 LDEEHHLQLVGITQMLRRDEALLPMKPM-HP-RAIVLCTTEESADQGFHMAKFISHCARL 263
+MLR + M P HP RA+VL T E ADQ K + RL
Sbjct: 87 -------------KMLRHENT--SMSPARHPVRALVLAPTRELADQVAANVKTYAKHTRL 131
Query: 264 DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 323
S++ GGV K A + +LIATP +L HIE +N + + YVVLDEAD + D
Sbjct: 132 RSAVVFGGVDMKPQTLELKAGVEVLIATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDI 191
Query: 324 GFGPEISKILNPL 336
GF P++ +IL+ L
Sbjct: 192 GFLPDLQRILSYL 204
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 102/202 (50%), Gaps = 31/202 (15%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL A+++KAV + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 18 TFDQFGLAADILKAVRESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGFHMA 254
LLP HP RA++L T E ADQ
Sbjct: 78 ------------------------RLLPSANTSASPARHPVRALMLTPTRELADQVAANV 113
Query: 255 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ S L S++ GGV D + +LIATP +L H++ + V+ ++ +VL
Sbjct: 114 QTYSKHTPLRSTVVFGGVDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVL 173
Query: 315 DEADTLFDRGFGPEISKILNPL 336
DEAD + D GF P++ +ILN L
Sbjct: 174 DEADRMLDMGFLPDLQRILNLL 195
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 31/202 (15%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL ++++KAV + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 18 TFDQFGLSSDILKAVRESGYTTPTPIQAQAIPVVLSGRDVMGAAQTGTGKTASFSLPIIQ 77
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGFHMA 254
LLP HP RA++L T E ADQ
Sbjct: 78 ------------------------RLLPTANTSASPARHPVRALMLTPTRELADQVAANV 113
Query: 255 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ S L S++ GGV D + +LIATP +L H++ + V+ ++ +VL
Sbjct: 114 QTYSKHTPLRSTVVFGGVDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVL 173
Query: 315 DEADTLFDRGFGPEISKILNPL 336
DEAD + D GF P++ +ILN L
Sbjct: 174 DEADRMLDMGFLPDLQRILNLL 195
>gi|372490012|ref|YP_005029577.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356565|gb|AEV27736.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 474
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 97/195 (49%), Gaps = 19/195 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F ELGL E++KAV +MG + IQ IP VL GK + + +G+G+T A+ LPL+Q
Sbjct: 3 FDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLIQR 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
LD P HP RA++L T E A Q + K +
Sbjct: 63 LLHLDTAS------------------PSPAKHPVRALMLAPTRELALQVYESVKSYTKYT 104
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
S GGV K + ++ATP +L H+E ++VS + ++ +VLDEAD +
Sbjct: 105 HFRSICLFGGVDIKPQIAEMKKGVEFVVATPGRLLDHVEQKSVSFNQVQALVLDEADRML 164
Query: 322 DRGFGPEISKILNPL 336
D GF P+I +ILN L
Sbjct: 165 DMGFIPDIQRILNML 179
>gi|194290299|ref|YP_002006206.1| dead box ATP-dependent RNA helicase with p-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
gi|193224134|emb|CAQ70143.1| DEAD box ATP-dependent RNA helicase with P-loop hydrolase domain
[Cupriavidus taiwanensis LMG 19424]
Length = 511
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 33/203 (16%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +F GL A +++A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP+
Sbjct: 29 VQTFDSFGLDARILRALSEQGYTSPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPI 88
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF- 251
+Q LLP+ HP RA++L T E ADQ +
Sbjct: 89 IQ------------------------RLLPLANASASPARHPVRALMLTPTRELADQVYD 124
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
++A++ H L S++ GGV D + +L+ATP +L H++ ++V+ ++
Sbjct: 125 NVARYAKHTD-LRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQM 183
Query: 312 VVLDEADTLFDRGFGPEISKILN 334
+VLDEAD + D GF P++ +I+N
Sbjct: 184 LVLDEADRMLDMGFLPDLQRIIN 206
>gi|329122297|ref|ZP_08250885.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
gi|327473858|gb|EGF19275.1| ATP-dependent RNA helicase SrmB [Haemophilus aegyptius ATCC 11116]
Length = 444
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 32/236 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
+ GFG + KI A ++ + QT+L +A + GE L E L D
Sbjct: 162 MLQMGFGQDAEKI-------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|319775651|ref|YP_004138139.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
gi|317450242|emb|CBY86458.1| ATP-dependent RNA helicase [Haemophilus influenzae F3047]
Length = 444
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|320166666|gb|EFW43565.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 754
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 17/205 (8%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
S+G E +F+ LGL +I A+ + + P+ IQ +P VL G +++ +GSG+
Sbjct: 344 SNGPEMENKKTFESLGLSPALIAALAEQEITTPTRIQSRALPQVLAGHDTGIAAETGSGK 403
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
TL+YLLP+V+ + D + ++P PRA++L A Q
Sbjct: 404 TLSYLLPIVEGIKKSDAQGDF-----------------VRPGRPRALILVPHRLLAMQVA 446
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
+++K + + + GG + P+ +++ATP +L+ ++++ VS D++Y
Sbjct: 447 NVSKRLGKAVKFSTFCVMGGDRISRQKSAMEKPLDVMVATPQRLLELLQNKYVSLADVKY 506
Query: 312 VVLDEADTLFDRGFGPEISKILNPL 336
+VLDEAD LF+ F EI+ +L PL
Sbjct: 507 LVLDEADALFEEQFLAEITTVLRPL 531
>gi|375107400|ref|ZP_09753661.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374668131|gb|EHR72916.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 492
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 24/204 (11%)
Query: 138 EVVSS---FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194
EV S+ F L L ++ +AV G + IQ IP VL+G+ V+ ++ +G+G+T A
Sbjct: 17 EVASAPALFNTLPLDPKLQRAVADQGYASMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAA 76
Query: 195 YLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM-HP-RAIVLCTTEESADQGFH 252
+ LPL+Q +ML+ + A M P HP RA+VL T E ADQ
Sbjct: 77 FSLPLLQ-----------------KMLKHENA--SMSPARHPVRALVLAPTRELADQVAA 117
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
K + L S++ GG+ K A + +LIATP +L HIE +N + + YV
Sbjct: 118 NVKAYAKHTNLRSTVVFGGIDMKPQTAELKAGVEVLIATPGRLLDHIEAKNCVLNQVEYV 177
Query: 313 VLDEADTLFDRGFGPEISKILNPL 336
VLDEAD + D GF P++ +IL+ L
Sbjct: 178 VLDEADRMLDIGFLPDLQRILSYL 201
>gi|348028423|ref|YP_004871109.1| ATP-dependent RNA helicase SrmB [Glaciecola nitratireducens FR1064]
gi|347945766|gb|AEP29116.1| ATP-dependent RNA helicase SrmB [Glaciecola nitratireducens FR1064]
Length = 423
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +L L E+ +AV +MG P+ IQ + IP + GK ++ + +G+G+T A+LLP+ Q
Sbjct: 2 FAQLDLDDELCRAVAEMGYERPTSIQSLVIPHAMEGKDILADAPTGTGKTAAFLLPVCQY 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ R+D++ RA+VL T E A+Q + A I+
Sbjct: 62 --------------LLDYPRKDDS-------STRALVLVPTRELANQVYEQAVAITKFTH 100
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ + NA + +L+ATP + +HIE + C DI ++LDEAD + D
Sbjct: 101 LTCGVITGGINYGTDRETLNAKVDILVATPGRLFEHIEQESFDCRDIESLILDEADRMLD 160
Query: 323 RGFGPEISKI 332
GF + +I
Sbjct: 161 MGFSSIVHQI 170
>gi|410614834|ref|ZP_11325872.1| cold-shock DEAD box protein A homolog [Glaciecola psychrophila 170]
gi|410165683|dbj|GAC39761.1| cold-shock DEAD box protein A homolog [Glaciecola psychrophila 170]
Length = 420
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 116/238 (48%), Gaps = 26/238 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++L L ++I AV +G P+ IQ + IP +NGK ++ S+ +G+G+T A+LLP Q
Sbjct: 2 FEQLELDDDLIHAVTDLGYKEPTSIQSLVIPEAMNGKDILASAPTGTGKTAAFLLPACQF 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-HCA 261
I RR +P R ++L T E A Q F AK IS +
Sbjct: 62 --------------ILDYPRR-------QPGSTRILILTPTRELALQIFEQAKAISKYVP 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ + GG++ D+ + +L+ATP + +HIE + C DI ++LDEAD +
Sbjct: 101 HIACGVITGGINYGTDRDLLEKNLDILVATPGRLFEHIEKESFDCRDIECLILDEADRML 160
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGK 379
D GF P +++I ++ + F L IA E L+ +E LE D++ K
Sbjct: 161 DMGFSPVVNQI---AAEARWRKQTMLFSATLEGTGIARFSDELLNDPVE-LEADSSRK 214
>gi|348618460|ref|ZP_08884985.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816260|emb|CCD29732.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 455
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 17/235 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL AE++ A+ G P+ +Q IP L G +++SS +GSG+T A++LP +Q
Sbjct: 24 SFSDLGLCAEILHALNAAGYTEPTPVQQRAIPVALAGHDLLVSSPTGSGKTAAFMLPAIQ 83
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHC 260
++Q+ + +M RR M P P +VL T E A Q H A+ +
Sbjct: 84 RFAQMQRSDSVAHSAHARMSRR------MPPARPALLVLTPTRELALQVTHAAETYGKQL 137
Query: 261 ARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
RL + GGV K LE + P +++ATP +L H+E + + +VLDEAD
Sbjct: 138 RRLRTVSVLGGVPYRKQLELLMRQP-DIVVATPGRLLDHLERGRIDLSRLSMLVLDEADR 196
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF I I+ S QT+L +A + +G LM+ ER
Sbjct: 197 MLDMGFIDAIRTIIAATPSSR--------QTLLFSATLDARIGALTQRLMKSPER 243
>gi|145640383|ref|ZP_01795967.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
gi|145274969|gb|EDK14831.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.4-21]
Length = 402
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 486
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLMLAEPLARAVAEMGYTAMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
L+Q L R E+ HP RA+VL T E ADQ
Sbjct: 61 LLQ------------------RLLRHESSSASPARHPVRALVLLPTRELADQVARQIALY 102
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEA
Sbjct: 103 ARHTKLRSTVVFGGIDMKPQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEA 162
Query: 318 DTLFDRGFGPEISKILNPL 336
D + D GF P++ +IL+ L
Sbjct: 163 DRMLDIGFLPDLQRILSYL 181
>gi|145630403|ref|ZP_01786184.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
gi|260582313|ref|ZP_05850106.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
gi|144984138|gb|EDJ91575.1| ATP-dependent RNA helicase [Haemophilus influenzae R3021]
gi|260094681|gb|EEW78576.1| ATP-dependent RNA helicase [Haemophilus influenzae NT127]
Length = 444
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|417948797|ref|ZP_12591939.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809160|gb|EGU44284.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 423
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 100/202 (49%), Gaps = 18/202 (8%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E SF +LGL ++ +E++ P+ +Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SESTKSFNQLGLSDHLLATLEELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LP++Q ++L + ++P P RA+VL T E A Q F
Sbjct: 62 LPIIQ-----------------RLLATKDNVIP-NPKLVRALVLVPTRELAQQVFDNVSS 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L + GGVS K D +L+ATP ++ H+ +N+ +VLDE
Sbjct: 104 YAKGTDLKVVVAYGGVSMKVQTDNLRQGADILVATPGRLIDHMFTKNIMLSQTEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPLKD 338
AD + D GF P+I +IL+ + D
Sbjct: 164 ADRMLDMGFMPDIKRILSRMND 185
>gi|294899003|ref|XP_002776456.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
gi|239883447|gb|EER08272.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
Length = 977
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 23/202 (11%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
SSG +FQ +GL + KA++KMG P+ IQ IPA+L G VV + +GSG+
Sbjct: 21 SSGGKKISGGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGK 80
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+++P++Q+ + H ++VG RA++L T E A Q
Sbjct: 81 TAAFVIPMIQIL-----KGHSEVVG------------------ARAVILSPTRELAMQTI 117
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
+ + + L + GG S ++ D ++ +LI TP ++ H+ + ++S ++Y
Sbjct: 118 KVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPDVLICTPGRLVHHMVEADLSLQRVQY 177
Query: 312 VVLDEADTLFDRGFGPEISKIL 333
+V DEAD LF+ GF ++ IL
Sbjct: 178 IVFDEADRLFEMGFADDMQSIL 199
>gi|339326719|ref|YP_004686412.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166876|gb|AEI77931.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 520
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 33/205 (16%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +F GL A +++A+ + G P+ IQ IP VL GK ++ ++ +G+G+T + LP+
Sbjct: 37 VQTFDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPI 96
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF- 251
+Q LLP+ HP RA++L T E ADQ +
Sbjct: 97 IQ------------------------RLLPLANASASPARHPVRALMLTPTRELADQVYD 132
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
++A++ H L S++ GGV D + +L+ATP +L H++ ++V+ ++
Sbjct: 133 NVARYAKHTD-LRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQM 191
Query: 312 VVLDEADTLFDRGFGPEISKILNPL 336
+VLDEAD + D GF P++ +I+N L
Sbjct: 192 LVLDEADRMLDMGFLPDLQRIINLL 216
>gi|113868675|ref|YP_727164.1| ATP-dependent helicase [Ralstonia eutropha H16]
gi|113527451|emb|CAJ93796.1| ATP-dependent helicase, superfamily II DNA and RNA helicase
[Ralstonia eutropha H16]
Length = 520
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 107/205 (52%), Gaps = 33/205 (16%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +F GL A +++A+ + G P+ IQ IP VL GK ++ ++ +G+G+T + LP+
Sbjct: 37 VQTFDSFGLDARILRALSEQGYTTPTPIQAQAIPVVLIGKDMMGAAQTGTGKTAGFALPI 96
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF- 251
+Q LLP+ HP RA++L T E ADQ +
Sbjct: 97 IQ------------------------RLLPLANASASPARHPVRALMLTPTRELADQVYD 132
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
++A++ H L S++ GGV D + +L+ATP +L H++ ++V+ ++
Sbjct: 133 NVARYAKHTD-LRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQM 191
Query: 312 VVLDEADTLFDRGFGPEISKILNPL 336
+VLDEAD + D GF P++ +I+N L
Sbjct: 192 LVLDEADRMLDMGFLPDLQRIINLL 216
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 111/198 (56%), Gaps = 25/198 (12%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E + +F+EL L ++KAV+K+G P+ IQ IP LNGK ++ S+ +GSG+T A+LL
Sbjct: 187 EELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLL 246
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
P+++ ++L RD + R ++L T E A Q + + +
Sbjct: 247 PVLE-----------------RLLFRDSEYRAI-----RVLILLPTRELALQCQSVMENL 284
Query: 258 SHCARLDSSMENGGVSSKALE-DVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLD 315
+ + + S + GG+S+KA E ++ +P ++IATP ++ H+ + + DD+ ++LD
Sbjct: 285 AQFSNITSCLIVGGLSNKAQEVELRKSP-DVVIATPGRLIDHLLNAHGIGLDDLEILILD 343
Query: 316 EADTLFDRGFGPEISKIL 333
EAD L D GF EI+KI+
Sbjct: 344 EADRLLDMGFKDEINKIV 361
>gi|383937020|ref|ZP_09990435.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
gi|383701930|dbj|GAB60526.1| ATP-dependent RNA helicase srmB homolog [Rheinheimera nanhaiensis
E407-8]
Length = 437
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 114/215 (53%), Gaps = 28/215 (13%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +L L ++++V+ +G P++IQ IPAV+ G+ +++SS +GSG+TLAYLLP++Q
Sbjct: 3 FNDLALDPRLLRSVQHLGFVKPTDIQAEAIPAVMVGRDLIVSSQTGSGKTLAYLLPMMQ- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+L+ + +RD RA++L T E A Q + +
Sbjct: 62 ----------RLLKSRPLSKRDA----------RALILAPTRELAKQVYAQLRLFVANTP 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S++ GG + E + +++ATP + H+E ++V + + ++LDEAD + D
Sbjct: 102 LTSALIVGGENFNDQEKLLKREPDIIVATPGRFVDHLEHKSVFINGLEVLILDEADRMLD 161
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
GF P+++ ++N D L+ QT++ +A +
Sbjct: 162 LGFMPQLT-VINKAADHRLR------QTLMFSATL 189
>gi|294900795|ref|XP_002777119.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
gi|239884576|gb|EER08935.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
Length = 967
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 23/202 (11%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
SSG +FQ +GL + KA++KMG P+ IQ IPA+L G VV + +GSG+
Sbjct: 22 SSGGKKISGGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGK 81
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+++P++Q+ + H ++VG RA++L T E A Q
Sbjct: 82 TAAFVIPMIQIL-----KGHSEVVG------------------ARAVILSPTRELAMQTI 118
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
+ + + L + GG S ++ D ++ +LI TP ++ H+ + ++S ++Y
Sbjct: 119 KVTRMLGKFTDLRLCLIVGGHSMESQFDRLSSNPDVLICTPGRLVHHMVEADLSLQRVQY 178
Query: 312 VVLDEADTLFDRGFGPEISKIL 333
+V DEAD LF+ GF ++ IL
Sbjct: 179 IVFDEADRLFEMGFADDMQSIL 200
>gi|419845515|ref|ZP_14368782.1| DEAD/DEAH box helicase [Haemophilus parainfluenzae HK2019]
gi|386415383|gb|EIJ29915.1| DEAD/DEAH box helicase [Haemophilus parainfluenzae HK2019]
Length = 442
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 32/236 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F+E L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSPFEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 63 IQ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GGV+ + +V N+ +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLKIATITGGVAYQNHGEVFNSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
+ GFG + KI A ++ + QT+L +A + GE L E L D
Sbjct: 162 MLQMGFGQDAEKI-------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|195385611|ref|XP_002051498.1| vas [Drosophila virilis]
gi|21361025|gb|AAM49782.1|AF513908_1 DEAD-box RNA helicase [Drosophila virilis]
gi|194147955|gb|EDW63653.1| vas [Drosophila virilis]
Length = 625
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 21/205 (10%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K +G N + + +F+ L+ ++ V K G VP+ IQ V IP + G+ ++ + +GS
Sbjct: 200 KVTGENVPQPIKNFESARLRGIVLDNVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGS 259
Query: 190 GRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
G+T A+LLP++ + LDE H L++ P+A+++ T E A Q
Sbjct: 260 GKTAAFLLPILN--NILDESHDLEI------------------GKPQAVIVSPTRELAIQ 299
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
F+ A+ S+ L S+ GG S K + +LIATP +L ++ ++ DD
Sbjct: 300 IFNEARKFSYTTYLKISIVYGGTSFKYQNECITKGCHVLIATPGRLLDFVDRTFITFDDT 359
Query: 310 RYVVLDEADTLFDRGFGPEISKILN 334
R++VLDEAD + D GF + KI++
Sbjct: 360 RFIVLDEADRMLDMGFSDSMRKIMH 384
>gi|118580947|ref|YP_902197.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118503657|gb|ABL00140.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 436
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 22/212 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL+AE++ A+ G P+ IQ IPA+ G ++ + +G+G+T A+ LP+VQ
Sbjct: 2 SFETLGLRAELLSAIAAQGYTNPTPIQTGAIPAIFEGCDLLAGAQTGTGKTAAFALPIVQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ E + P K PRA+VL T E A Q +
Sbjct: 62 MLG--------------------ENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRL 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S+M GGV+ +A + + + +++ATP +L H E V+ I+++VLDEAD +
Sbjct: 102 SLRSTMIYGGVNIQAQIERLHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRML 161
Query: 322 DRGFGPEISKILN--PLKDSALKSNGQGFQTI 351
D GF I K+ P+K L + Q+I
Sbjct: 162 DLGFIDAIHKVAQYLPVKRQTLLFSATYSQSI 193
>gi|345429300|ref|YP_004822418.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
gi|301155361|emb|CBW14827.1| ATP-dependent RNA helicase [Haemophilus parainfluenzae T3T1]
Length = 442
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F+E L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSPFEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 63 IQ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GGV+ + +V N+ +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLKIATITGGVAYQNHGEVFNSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|325577158|ref|ZP_08147642.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
33392]
gi|325160740|gb|EGC72861.1| ATP-dependent RNA helicase SrmB [Haemophilus parainfluenzae ATCC
33392]
Length = 443
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F+E L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSPFEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 63 IQ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GGV+ + +V N+ +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLKIATITGGVAYQNHGEVFNSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|148264031|ref|YP_001230737.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146397531|gb|ABQ26164.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 438
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 20/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL+AE++ A+ G P+ IQ IP + G ++ + +G+G+T A+ LP+VQ
Sbjct: 2 SFESLGLRAELLSAIAAQGYTTPTPIQTEAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
R E + P K PRA+VL T E A Q +
Sbjct: 62 --------------------RLGENIPPDKRRRPRALVLVPTRELAAQVSEQMNNYARRL 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S+M GGV+ +A + + + +++ATP +L H E ++ I+++VLDEAD +
Sbjct: 102 SLRSTMIYGGVNIQAQIERLHRGVDIVVATPGRLLDHAERGTINLSRIKFLVLDEADRML 161
Query: 322 DRGFGPEISKI 332
D GF +I K+
Sbjct: 162 DLGFIDDIHKV 172
>gi|373467933|ref|ZP_09559219.1| ATP-dependent RNA helicase SrmB [Haemophilus sp. oral taxon 851
str. F0397]
gi|371756971|gb|EHO45770.1| ATP-dependent RNA helicase SrmB [Haemophilus sp. oral taxon 851
str. F0397]
Length = 441
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q ++ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQSEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|347818470|ref|ZP_08871904.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 486
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 19/199 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL+G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLSGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
L+Q L + E+ HP RA+VL T E ADQ
Sbjct: 61 LLQ------------------RLLKHESGSASPARHPVRALVLLPTRELADQVARQIALY 102
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEA
Sbjct: 103 AKHTRLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEA 162
Query: 318 DTLFDRGFGPEISKILNPL 336
D + D GF P++ +IL+ L
Sbjct: 163 DRMLDIGFLPDLQRILSYL 181
>gi|394988591|ref|ZP_10381426.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
gi|393791970|dbj|GAB71065.1| hypothetical protein SCD_00993 [Sulfuricella denitrificans skB26]
Length = 476
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 126/256 (49%), Gaps = 34/256 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AV G P+ IQ IP VL G+ ++ + +G+G+T + LPL+Q
Sbjct: 2 SFENLGLSAELLRAVTDQGYTEPTPIQAQAIPVVLEGRDLMGGAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
+ S + + + P K HP RA++L T E A Q +
Sbjct: 62 LLS----------------IHANTSTSPAK--HPVRALILTPTRELAAQVEESVQTYGKY 103
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GGV+ K + +L+ATP +L H+E + V+ + +VLDEAD +
Sbjct: 104 LPLKSTVVFGGVNIKEQIAALKGGVEILVATPGRLLDHVEQKTVNLSKVEILVLDEADRM 163
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA---EMLGEQLSS---LMECLER 374
D GF P+I +I+ L Q +L +A A + L +QL + L+E R
Sbjct: 164 LDMGFLPDIKRIIALLPAKR--------QNLLFSATFAGEIKKLSDQLLTDPVLIEVARR 215
Query: 375 DNAGK-VTAMLLEMDQ 389
+ A + VT ++ +D
Sbjct: 216 NAASENVTQVIYPVDH 231
>gi|16272370|ref|NP_438583.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae Rd KW20]
gi|260580515|ref|ZP_05848343.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
gi|1174440|sp|P44701.1|SRMB_HAEIN RecName: Full=ATP-dependent RNA helicase SrmB homolog
gi|1573394|gb|AAC22078.1| ATP-dependent RNA helicase (srmB) [Haemophilus influenzae Rd KW20]
gi|260092857|gb|EEW76792.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae RdAW]
Length = 439
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|393775871|ref|ZP_10364176.1| atp-dependent rna helicase [Ralstonia sp. PBA]
gi|392717127|gb|EIZ04696.1| atp-dependent rna helicase [Ralstonia sp. PBA]
Length = 507
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 33/209 (15%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
A+ ++F GL A++++A+ + G V + IQ IP V+ G+ V+ ++ +G+G+T +
Sbjct: 4 TAQADTTFDSFGLHADILRAITEQGYRVATPIQAQAIPVVMQGRDVMGAAQTGTGKTAGF 63
Query: 196 LLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESAD 248
LP++Q LLP HP RA++L T E AD
Sbjct: 64 SLPIIQ------------------------RLLPFASTSTSPARHPVRALMLTPTRELAD 99
Query: 249 QGF-HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + ++AK+ H A L S++ GGV + +L+ATP +L H++ + V+
Sbjct: 100 QVYDNVAKYAKHTA-LRSTVVFGGVDMNPQTAELRRGVEILVATPGRLLDHVQQKTVNLS 158
Query: 308 DIRYVVLDEADTLFDRGFGPEISKILNPL 336
++ +VLDEAD + D GF P++ +ILN L
Sbjct: 159 QVQMLVLDEADRMLDMGFLPDLQRILNLL 187
>gi|121606092|ref|YP_983421.1| DEAD/DEAH box helicase [Polaromonas naphthalenivorans CJ2]
gi|120595061|gb|ABM38500.1| DEAD/DEAH box helicase domain protein [Polaromonas
naphthalenivorans CJ2]
Length = 487
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 105/200 (52%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFALP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q +M++ + A P + HP RA+VL T E A Q K
Sbjct: 61 LLQ-----------------RMMKHENASTSPAR--HPVRALVLLPTRELAVQVAEQVKL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L+S++ GG+ K + +L+ATP +L HIE +N + + YVVLDE
Sbjct: 102 YAKYTNLNSAVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +IL+ L
Sbjct: 162 ADRMLDIGFLPDLQRILSYL 181
>gi|419802853|ref|ZP_14328033.1| DEAD/DEAH box helicase [Haemophilus parainfluenzae HK262]
gi|385189093|gb|EIF36562.1| DEAD/DEAH box helicase [Haemophilus parainfluenzae HK262]
Length = 442
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F+E L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSPFEEFDLSPELLKALEKKGYTRPTAIQLEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 63 IQ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GGV+ + +V N+ +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLKIATITGGVAYQNHGEVFNSNQDIVVATPGRLLQYIKEENFDCRAVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|407798892|ref|ZP_11145795.1| RhlE [Oceaniovalibus guishaninsula JLT2003]
gi|407059240|gb|EKE45173.1| RhlE [Oceaniovalibus guishaninsula JLT2003]
Length = 476
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 117/220 (53%), Gaps = 32/220 (14%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++++A+++ G P+ IQ IPA L+G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLKLGPKVLQAIDEAGYTQPTPIQEAAIPAALDGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLR-RDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
ITQ+ R R +A +P R++VLC T E A Q S
Sbjct: 61 -----------------ITQLARGRAKARMP------RSLVLCPTRELAAQVAENFDTYS 97
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L ++ GGVS K + + + + +LIATP +L H E + +D++ +V+DEAD
Sbjct: 98 AHVKLTKALLIGGVSFKEQDQLIDRGVDVLIATPGRLLDHHERGKLLLNDVKIMVVDEAD 157
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
+ D GF P+I +I N L+ + +QT+ +A +A
Sbjct: 158 RMLDMGFIPDIERIFNILR--------RPYQTLFFSATMA 189
>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 507
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 26/218 (11%)
Query: 127 SEREKSSGSNAEVVS-------SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
SE +G NA +++ +F +LGL E+++AV G P+ IQ IP V++GK
Sbjct: 2 SEINTLAGENAIIIAADAVPEITFADLGLAPELLRAVLDEGYTKPTPIQAQAIPLVISGK 61
Query: 180 SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAI 238
++ + +G+G+T A+ LP++Q P HP RA+
Sbjct: 62 DIMGGAQTGTGKTAAFTLPILQRILPFASSS------------------PSPAKHPVRAL 103
Query: 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298
+L T E A Q F K S + + GGV + + +L+ATP +L H
Sbjct: 104 ILAPTRELAMQVFESVKTYSKHTPIRAMCAYGGVDIRPQIAELKKGVEILVATPGRLLDH 163
Query: 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
+E+++VS + ++ +VLDEAD + D GF P++++ILN L
Sbjct: 164 VENKSVSFNSVQALVLDEADRMLDMGFVPDVTRILNML 201
>gi|84393955|ref|ZP_00992695.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
gi|84375399|gb|EAP92306.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus 12B01]
Length = 421
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L E++KA+++MG P++IQ IP L+G+ V+ S+ +G+G+T +++LP
Sbjct: 1 MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P K P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRKKSGPARMLILTPTRELAMQITEQAREL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ L+ GGV + D+ + +++ATP ++++IE C I ++VLDEA
Sbjct: 99 AKYTSLNIFTITGGVMYQEHADILSTTQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPVVDRL 173
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 33/202 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KAV++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 37 ATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 96
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFH 252
Q LLP HP RA++L T E ADQ +
Sbjct: 97 Q------------------------RLLPHASTSASPARHPVRALILTPTRELADQVAAN 132
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H A L S++ GGV D + +LIATP +L H++ + + ++ +
Sbjct: 133 VQSYAKHTA-LRSAVVFGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQIL 191
Query: 313 VLDEADTLFDRGFGPEISKILN 334
VLDEAD + D GF P++ +ILN
Sbjct: 192 VLDEADRMLDMGFLPDLQRILN 213
>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 489
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
L+Q L + E+ HP RA+VL T E ADQ
Sbjct: 61 LLQ------------------RLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALY 102
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEA
Sbjct: 103 AKYTKLRSTVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEA 162
Query: 318 DTLFDRGFGPEISKILNPL 336
D + D GF P++ +IL+ L
Sbjct: 163 DRMLDIGFLPDLQRILSYL 181
>gi|407070028|ref|ZP_11100866.1| ATP-dependent RNA helicase SrmB [Vibrio cyclitrophicus ZF14]
Length = 421
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L E++KA+++MG P++IQ IP L+G+ V+ S+ +G+G+T +++LP
Sbjct: 1 MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P K P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRKKSGPARMLILTPTRELAMQITEQAREL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ L+ GGV + D+ + +++ATP ++++IE C I ++VLDEA
Sbjct: 99 AKYTSLNIFTITGGVMYQEHADILSTTQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPVVDRL 173
>gi|192362407|ref|YP_001982121.1| ATP-dependent RNA helicase [Cellvibrio japonicus Ueda107]
gi|190688572|gb|ACE86250.1| ATP-dependent RNA helicase, DEAD box family [Cellvibrio japonicus
Ueda107]
Length = 477
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 125/256 (48%), Gaps = 25/256 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E+++AV++ G + +Q IP G+ +++++ +G+G+T A+ PL+Q
Sbjct: 30 NFAALGLAPELLRAVKRCGFQQLTPVQEQAIPPARRGRDLLVTAQTGTGKTAAFGFPLLQ 89
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
Q+L + A +P H RA+VL T E +Q + +H
Sbjct: 90 -----------------QLLEKPRA---TQPGHTRALVLAPTRELVEQVADNLQQYAHFT 129
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L + GGV + + A + +L+ATP +L+H+E N++ + ++VLDEAD +
Sbjct: 130 SLTIAAVYGGVKHSSQANKLQAGLDVLVATPGRLLEHVELGNINLQQVEFLVLDEADRML 189
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN--AGK 379
D GF EISK+LN + T VT E+L LS + + N A
Sbjct: 190 DMGFVGEISKLLNGMGKKPQILFFSATLTQSVTTLAKEILARPLSV---AVSKRNAVADT 246
Query: 380 VTAMLLEMDQAEVFDL 395
V +L +DQA ++L
Sbjct: 247 VEHLLYPVDQARKYEL 262
>gi|195115577|ref|XP_002002333.1| GI13281 [Drosophila mojavensis]
gi|193912908|gb|EDW11775.1| GI13281 [Drosophila mojavensis]
Length = 649
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 30/234 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF + L+ +++ V K G VP+ IQ V IP + G+ ++ + +GSG+T A+LLP+
Sbjct: 234 IKSFDQARLRGSVLENVVKSGYVVPTPIQKVSIPVIAEGRDLMACAQTGSGKTAAFLLPI 293
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ + LDE H L++ P+A+++ T E A Q F+ A+ ++
Sbjct: 294 LS--NILDESHDLEI------------------GKPQAVIVSPTRELAIQIFNEARKFAY 333
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S+ GG S K + +LIATP +L ++ ++ +D R+VVLDEAD
Sbjct: 334 STYLKISIVYGGTSFKYQNECITKGCHVLIATPGRLLDFVDRTFITFNDTRFVVLDEADR 393
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE----MLGEQLSSLM 369
+ D GF + KI++ A QT++ +A E M GE L + +
Sbjct: 394 MLDMGFSDSMRKIMHHQTMRAEH------QTLMFSATFPEEIQRMAGEFLRNYV 441
>gi|86147398|ref|ZP_01065711.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
gi|218708540|ref|YP_002416161.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus LGP32]
gi|85834826|gb|EAQ52971.1| ATP-dependent RNA helicase SrmB [Vibrio sp. MED222]
gi|218321559|emb|CAV17511.1| ATP-dependent RNA helicase srmB [Vibrio splendidus LGP32]
Length = 421
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L E++KA+++MG P++IQ IP L+G+ V+ S+ +G+G+T +++LP
Sbjct: 1 MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P K P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRKKSGPARMLILTPTRELAMQITEQAREL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ L+ GGV + D+ + +++ATP ++++IE C I ++VLDEA
Sbjct: 99 AKYTSLNIFTITGGVMYQEHADILSTTQDIVVATPGRLMEYIEGERFDCRAIEWLVLDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPVVDRL 173
>gi|149245944|ref|XP_001527442.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013518|sp|A5DY34.1|DRS1_LODEL RecName: Full=ATP-dependent RNA helicase DRS1
gi|146449836|gb|EDK44092.1| hypothetical protein LELG_02271 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 686
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 40/242 (16%)
Query: 122 LSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSV 181
L N +E ++ ++A +FQEL L ++K+++++G VP+ +Q IP L GK +
Sbjct: 177 LDNFYESQETNTSASALKSKTFQELQLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDI 236
Query: 182 VLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVL 240
V S+ +GSG+T AYL+P++ E LL +K +AI+L
Sbjct: 237 VASAQTGSGKTAAYLIPII------------------------ERLLYVKNSTSTKAIIL 272
Query: 241 CTTEESA----DQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL 296
T E A D G + +F+S+ L+ M GG+S K E ++IATP ++
Sbjct: 273 TPTRELAIQVHDVGRKLGQFVSN---LNFGMAVGGLSLKQQEQQLKTRPDIVIATPGRLI 329
Query: 297 QHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
HI + + S +D++ +++DEAD + + GF E+++IL+ + Q QT+L +A
Sbjct: 330 DHIRNSPSFSVEDVQVLIIDEADRMLEEGFQEELTEILSLIPK-------QKRQTLLFSA 382
Query: 356 AI 357
+
Sbjct: 383 TM 384
>gi|334130724|ref|ZP_08504514.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333444124|gb|EGK72080.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 480
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 113/235 (48%), Gaps = 31/235 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ELGL E+++AV G P+ IQ IP VL G+ V+ + +G+G+T ++ LPL+Q
Sbjct: 2 SFEELGLIPELLRAVADTGYTSPTPIQAQAIPVVLAGRDVMGGAQTGTGKTASFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
+ P HP RA+++C T E A Q K S
Sbjct: 62 RLAPHANSS------------------PSPAKHPVRALIVCPTRELAMQVHESVKTYSKH 103
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L SS GGV KA +++ATP +L H+E + V+ ++ +VLDEAD +
Sbjct: 104 LPLRSSCIYGGVDMKAQVAELREGREIVVATPGRLLDHVEGKTVNLGQVQMLVLDEADRM 163
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
D GF P+I +IL L Q++L +A + E++ L + + RD
Sbjct: 164 LDMGFIPDIKRILALLPTQR--------QSLLFSATFS----EEIKKLAQAMLRD 206
>gi|386332888|ref|YP_006029057.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334195335|gb|AEG68520.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 495
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 259
+ L E + + P + HP RA++L T E ADQ + ++AK+ +
Sbjct: 76 --NLLPEA--------------NTSASPAR--HPVRALILTPTRELADQVYDNVAKYAKY 117
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 118 TA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 176
Query: 320 LFDRGFGPEISKILN 334
+ D GF P++ +I+N
Sbjct: 177 MLDMGFLPDLQRIIN 191
>gi|365538739|ref|ZP_09363914.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 421
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 34/244 (13%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
++ V FQ LGL ++ A++ +G P+++Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SDTVHPFQRLGLSTTLVSALQSLGFEQPTDVQSQAIPHVLAGKDVMAGAQTGTGKTAAFG 61
Query: 197 LPLVQVY--SQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 254
LP++Q + +Q++ E + ++V RA+VL T E A Q F
Sbjct: 62 LPILQRFLDNQVEREANSKVV--------------------RALVLVPTRELAQQVFDSL 101
Query: 255 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ L GG S + +LIATP ++ H+ RN+ +VL
Sbjct: 102 SAYAQSTTLKIVTAYGGTSMQVQTRNLRGGTDILIATPGRLIDHLFVRNIILTQTEVLVL 161
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
DEAD + D GF P+I +IL + D QT+ +A +++ +L + R
Sbjct: 162 DEADRMLDMGFLPDIQRILQRMNDER--------QTLFFSAT----FDDKIKALAHKMMR 209
Query: 375 DNAG 378
D G
Sbjct: 210 DPVG 213
>gi|300703503|ref|YP_003745105.1| ATP-dependent RNA helicase, dead-box family [Ralstonia solanacearum
CFBP2957]
gi|299071166|emb|CBJ42480.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CFBP2957]
Length = 495
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 259
+ L E + + P + HP RA++L T E ADQ + ++AK+ +
Sbjct: 76 --NLLPEA--------------NTSASPAR--HPVRALILTPTRELADQVYDNVAKYAKY 117
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 118 TA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 176
Query: 320 LFDRGFGPEISKILN 334
+ D GF P++ +I+N
Sbjct: 177 MLDMGFLPDLQRIIN 191
>gi|207743814|ref|YP_002260206.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|421897757|ref|ZP_16328124.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206588963|emb|CAQ35925.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206595214|emb|CAQ62141.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 495
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 259
+ L E + + P + HP RA++L T E ADQ + ++AK+ +
Sbjct: 76 --NLLPEA--------------NTSASPAR--HPVRALILTPTRELADQVYDNVAKYAKY 117
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 118 TA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 176
Query: 320 LFDRGFGPEISKILN 334
+ D GF P++ +I+N
Sbjct: 177 MLDMGFLPDLQRIIN 191
>gi|380513114|ref|ZP_09856521.1| ATP-dependent RNA helicase, partial [Xanthomonas sacchari NCPPB
4393]
Length = 393
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 103/222 (46%), Gaps = 33/222 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQAQAIPVALEGHDLMAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHL----QLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
HL Q VG P PRA+VL T E A Q +
Sbjct: 62 ---------HLGTSPQTVG-------------AGPRKPRALVLTPTRELATQVHDSLRGY 99
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
S R+ S+ GGV D + +LIA P +L H+E R+V I +VLDEA
Sbjct: 100 SKYLRIPSATIYGGVGMGNQLDALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEA 159
Query: 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D + D GF P I +IL L Q QT+L +A E
Sbjct: 160 DRMLDMGFLPSIKRILAKLPR-------QNRQTLLFSATFEE 194
>gi|421891297|ref|ZP_16322106.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
gi|378963340|emb|CCF98854.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
K60-1]
Length = 495
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 259
+ L E + + P + HP RA++L T E ADQ + ++AK+ +
Sbjct: 76 --NLLPEA--------------NTSASPAR--HPVRALILTPTRELADQVYDNVAKYAKY 117
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 118 TA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 176
Query: 320 LFDRGFGPEISKILN 334
+ D GF P++ +I+N
Sbjct: 177 MLDMGFLPDLQRIIN 191
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 33/202 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KAV++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFH 252
Q LLP HP RA++L T E ADQ +
Sbjct: 71 Q------------------------RLLPHASTSASPARHPVRALILTPTRELADQVAAN 106
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H A L S++ GGV D + +LIATP +L H++ + + ++ +
Sbjct: 107 VQSYAKHTA-LRSAVVFGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQIL 165
Query: 313 VLDEADTLFDRGFGPEISKILN 334
VLDEAD + D GF P++ +ILN
Sbjct: 166 VLDEADRMLDMGFLPDLQRILN 187
>gi|350545971|ref|ZP_08915408.1| ATP-dependent RNA helicase NGO0650 [Candidatus Burkholderia kirkii
UZHbot1]
gi|350526259|emb|CCD40935.1| ATP-dependent RNA helicase NGO0650 [Candidatus Burkholderia kirkii
UZHbot1]
Length = 544
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 148/300 (49%), Gaps = 45/300 (15%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL AE++ A+ G P+ +Q IPA L G+ +++SS +GSG+T A++LP ++
Sbjct: 105 TFESLGLSAEIVSALTAAGYAAPTPVQQRAIPAALAGRDLLVSSPTGSGKTAAFMLPAIE 164
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKP---MHPRAIVLCTTEESADQGFHMA-KFI 257
++QL ++ QL + R A +P PR +VL T E A Q A +
Sbjct: 165 KFAQLQKQEAQQL----RAPRDPNAPRGRRPQPIARPRLLVLTPTRELAMQVSTAATTYG 220
Query: 258 SHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H RL + GGV+ + L ++ P +L+ATP ++ H+E + ++ VLDE
Sbjct: 221 KHLHRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLIDHLERSRIDLSELNMFVLDE 279
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA----IAEMLGEQLSS----- 367
AD + D GF +I I++ + + QT+L +A I+ M G L
Sbjct: 280 ADRMLDMGFIEDIETIVD--------ATPETHQTLLFSATIDGKISSMTGRLLKDPERIE 331
Query: 368 LMECLE--------------RDNAGKVTAMLL---EMDQAEVFDLTESQ-DALKKKVVEA 409
+++ LE RD+ ++ LL E+DQA VF T+S D + ++ +A
Sbjct: 332 IVQKLEAKSNIAQTVHYVDDRDHKDRLLNHLLRDTELDQAIVFTATKSDADLIANRLADA 391
>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 546
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 101/202 (50%), Gaps = 19/202 (9%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
G+ +F + GL +++KAV G P+ IQ IP V+ G V+ ++ +G+G+T
Sbjct: 11 GAQEPATVTFSDFGLHPDVLKAVTAAGYTKPTPIQAKAIPVVMAGHDVMAAAQTGTGKTA 70
Query: 194 AYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFH 252
+ LP++ V M + P + HP RA+++ T E ADQ
Sbjct: 71 GFALPIINVL----------------MPSASHSASPAR--HPVRALIIAPTRELADQIHD 112
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
K L S+ GGV + + A + +LIATP +L H++ ++V+ ++ +
Sbjct: 113 NVKTYIQFTPLRSAAVFGGVDMQPQTNALRAGVEILIATPGRLLDHVQQKSVNLSQVQLL 172
Query: 313 VLDEADTLFDRGFGPEISKILN 334
VLDEAD + D GF P+I +I+N
Sbjct: 173 VLDEADRMLDMGFLPDIQRIIN 194
>gi|395003518|ref|ZP_10387653.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
gi|394318531|gb|EJE54950.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
Length = 499
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
L+Q L + E+ HP RA+VL T E ADQ
Sbjct: 61 LLQ------------------RLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALY 102
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEA
Sbjct: 103 AKYTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEA 162
Query: 318 DTLFDRGFGPEISKILNPL 336
D + D GF P++ +IL+ L
Sbjct: 163 DRMLDIGFLPDLQRILSYL 181
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 33/204 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLHADILKAIAEQGYTTPTPIQAKAIPVVLGGRDVMGAAQTGTGKTASFSLPII 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQ-GFH 252
Q LLP+ HP RA++L T E ADQ +
Sbjct: 71 Q------------------------RLLPLANTSASPARHPVRALILTPTRELADQVAAN 106
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H A L S++ GGV + +LIATP +L H++ + + ++ +
Sbjct: 107 VQSYAKHTA-LRSAVVFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQML 165
Query: 313 VLDEADTLFDRGFGPEISKILNPL 336
VLDEAD + D GF P++ +ILN L
Sbjct: 166 VLDEADRMLDMGFLPDLQRILNLL 189
>gi|285019480|ref|YP_003377191.1| ATP-dependent RNA helicase [Xanthomonas albilineans GPE PC73]
gi|283474698|emb|CBA17197.1| probable atp-dependent rna helicase protein [Xanthomonas
albilineans GPE PC73]
Length = 456
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 106/233 (45%), Gaps = 33/233 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQSQAIPVALQGHDLMAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHL----QLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
HL Q VG P PRA++L T E A Q +
Sbjct: 62 ---------HLGTSAQTVG-------------SGPRKPRALILTPTRELATQVHDSLRGY 99
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
S R+ S+ GGV D + +LIA P +L H+E R+V I +VLDEA
Sbjct: 100 SKYLRIPSATIYGGVGMGNQLDALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEA 159
Query: 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
D + D GF P I +IL L Q QT+L +A E + + M
Sbjct: 160 DRMLDMGFLPSIKRILTKLPK-------QNRQTLLFSATFEEGIKQLAREFMH 205
>gi|417949719|ref|ZP_12592851.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus ATCC 33789]
gi|342807859|gb|EGU43037.1| ATP-dependent RNA helicase SrmB [Vibrio splendidus ATCC 33789]
Length = 421
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 99/195 (50%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L E++KA+++MG P++IQ IP L+G+ V+ S+ +G+G+T +++LP
Sbjct: 1 MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q P K P R ++L T E A Q A+ +
Sbjct: 61 ALQYLQDF----------------------PRKKAGPARMLILTPTRELAMQITDQAREL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ L+ GGV + D+ +++ATP ++++IE C I +++LDEA
Sbjct: 99 AKYTALNIFTITGGVMYQEHADILGTTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPVVDRL 173
>gi|159462780|ref|XP_001689620.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283608|gb|EDP09358.1| predicted protein [Chlamydomonas reinhardtii]
Length = 530
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 99/175 (56%), Gaps = 22/175 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLV 200
+F++LGL A ++ A+ MG+ P++IQ + +PA+L + L+S +GSG+TLAYLLPLV
Sbjct: 161 TFEQLGLSAALVSALHGMGISEPTDIQSLALPALLGAPGNYFLASHTGSGKTLAYLLPLV 220
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+E + +P +P PR +VL T E DQ +AK + H
Sbjct: 221 HAIKAQEE----------------QGFVP-RPKRPRVLVLGPTRELTDQISQVAKRLCHT 263
Query: 261 ARLDSSMENG--GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
A+ ++ N G+S +A + P+ +L+ATP+ LQH+ + NV+ DI+++V
Sbjct: 264 AKFRAACVNAYKGMSEQARQLAG--PVDVLVATPTRFLQHVREGNVAYRDIQWLV 316
>gi|145638668|ref|ZP_01794277.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
gi|145272263|gb|EDK12171.1| ATP-dependent RNA helicase [Haemophilus influenzae PittII]
Length = 439
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTTAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|325921307|ref|ZP_08183167.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
gi|325548274|gb|EGD19268.1| DNA/RNA helicase, superfamily II [Xanthomonas gardneri ATCC 19865]
Length = 462
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL G T P+ P PRA++L T E A Q + S
Sbjct: 62 ---------HL---GTTPQ--------PVNGPRKPRALILTPTRELATQVHDSLRGYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 102 LRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 161
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 162 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|148982431|ref|ZP_01816753.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
gi|145960483|gb|EDK25855.1| ATP-dependent RNA helicase SrmB [Vibrionales bacterium SWAT-3]
Length = 421
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 31/199 (15%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L E++KA+++MG P++IQ IP L+G+ V+ S+ +G+G+T +++LP
Sbjct: 1 MIRTFAELDLNQELLKAIDEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTASFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESA----DQGFHM 253
+Q P K P R ++L T E A DQ +
Sbjct: 61 ALQYLQDF----------------------PRKKAGPARMLILTPTRELAMQITDQAREL 98
Query: 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
AK+ + L+ GGV + D+ +++ATP ++++IE C I +++
Sbjct: 99 AKYTA----LNIFTITGGVMYQEHADILGTTQDIVVATPGRLMEYIEAERFDCRAIEWLI 154
Query: 314 LDEADTLFDRGFGPEISKI 332
LDEAD + D GFGP + ++
Sbjct: 155 LDEADRMLDMGFGPVVDRL 173
>gi|397169877|ref|ZP_10493304.1| DEAD/DEAH box helicase [Alishewanella aestuarii B11]
gi|396088405|gb|EJI85988.1| DEAD/DEAH box helicase [Alishewanella aestuarii B11]
Length = 444
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 114/215 (53%), Gaps = 28/215 (13%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ++GL ++++V+ +G P+EIQ IPAV+ G+ +++SS +GSG+TLAYLLP++Q
Sbjct: 3 FQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLPMMQ- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+L+ + ++D RA++L T E A Q + +
Sbjct: 62 ----------RLLKSRALSKQDA----------RALILTPTRELAKQVYAQLRLFVANTP 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ + + GG + E + +++ATP + H+E ++V + ++LDEAD + D
Sbjct: 102 VTAVLLVGGENFNDQEKLLKRQPDIIVATPGRFVDHLEHKSVFLQGLEMLILDEADRMLD 161
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
GF P+++ I+N D L+ QT+L +A +
Sbjct: 162 LGFLPQLT-IINKAADHRLR------QTLLFSATL 189
>gi|365097957|ref|ZP_09331724.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
gi|363413202|gb|EHL20410.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
Length = 505
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
L+Q L + E+ HP RA+VL T E ADQ
Sbjct: 61 LLQ------------------RLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALY 102
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEA
Sbjct: 103 AKYTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEA 162
Query: 318 DTLFDRGFGPEISKILNPL 336
D + D GF P++ +IL+ L
Sbjct: 163 DRMLDIGFLPDLQRILSFL 181
>gi|145628788|ref|ZP_01784588.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
gi|144979258|gb|EDJ88944.1| ATP-dependent RNA helicase [Haemophilus influenzae 22.1-21]
gi|309750162|gb|ADO80146.1| ATP-dependent RNA helicase [Haemophilus influenzae R2866]
Length = 439
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEECDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|148975453|ref|ZP_01812324.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
gi|145964881|gb|EDK30132.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
Length = 423
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 18/202 (8%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E SF +LGL ++ + ++ P+ +Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SESTKSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LP++Q ++L + ++P P RA+VL T E A Q F
Sbjct: 62 LPIIQ-----------------RLLATKDNVIP-NPKLVRALVLVPTRELAQQVFDNVTS 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L + GGVS K D A +L+ATP ++ H+ +N+ +VLDE
Sbjct: 104 YAKGTDLKVVVAYGGVSMKVQTDNLRAGADILVATPGRLIDHMFTKNIMLSQTEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPLKD 338
AD + D GF P+I +IL+ + +
Sbjct: 164 ADRMLDMGFMPDIKRILSRMNE 185
>gi|260775423|ref|ZP_05884320.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608604|gb|EEX34769.1| ATP-dependent RNA helicase SrmB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 410
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 101/194 (52%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L ++ A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIKNFAELELDENLLVAIEEMGYTRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARVLILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L+ GGV + D+ +++ATP ++++IE C I +++LDEAD
Sbjct: 100 KNTNLNIFTITGGVQYQEHADILAKTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKI 332
+ D GFGP + ++
Sbjct: 160 RMLDMGFGPTVDRL 173
>gi|21230065|ref|NP_635982.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769942|ref|YP_244704.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|188993155|ref|YP_001905165.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. B100]
gi|21111589|gb|AAM39906.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66575274|gb|AAY50684.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris
str. 8004]
gi|167734915|emb|CAP53127.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. campestris]
Length = 462
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL G T P+ P PRA++L T E A Q + S
Sbjct: 62 ---------HL---GTTPQ--------PVNGPRKPRALILTPTRELATQVHDSLRGYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 102 LRIPSAVIYGGVGMGNQLDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 161
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 162 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|15836797|ref|NP_297485.1| ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
gi|9104994|gb|AAF83005.1|AE003873_2 ATP-dependent RNA helicase [Xylella fastidiosa 9a5c]
Length = 446
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 28/234 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL +++A+ + G +P+ IQ IP L G ++ ++ +G+G+T A+ LP++Q
Sbjct: 2 NFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
VG + PRA+VL T E A Q + + +
Sbjct: 62 RLMAASSN-----VGAGK---------------PRALVLTPTRELATQVYDSLRGYAKYQ 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S++ GGV DV + +LIA P ++ HIE R+V + +VLDEAD +
Sbjct: 102 RVSSAVIYGGVGMGNQLDVLRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRML 161
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
D GF P I +IL L Q QT+L +A AE + +QL+ C R+
Sbjct: 162 DMGFLPSIKRILGKLPR-------QNRQTLLFSATFAEPI-KQLALEFMCRPRE 207
>gi|195998355|ref|XP_002109046.1| hypothetical protein TRIADDRAFT_52679 [Trichoplax adhaerens]
gi|190589822|gb|EDV29844.1| hypothetical protein TRIADDRAFT_52679 [Trichoplax adhaerens]
Length = 512
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 16/197 (8%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
SSF L L+ ++I ++ + + P+ IQ + IP + GK+V+ +S +GSG+T+AYL PL+
Sbjct: 104 SSFSRLFLRDDVIDSLANINITTPTAIQSLAIPKIAAGKNVLCASETGSGKTIAYLAPLI 163
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+ +E+ G+ L R PRA ++ + E A Q +AK + H
Sbjct: 164 HRIKEEEEK-----CGLITRLNR-----------PRACIVVPSRELAQQTLKVAKSLCHV 207
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
++ GG K LE P +++ATP ++++ + D+ ++VLDEADTL
Sbjct: 208 SKYRVVGVIGGKKQKLLEKALETPTDVVVATPGMLIKYHRYNQIFFSDLTHLVLDEADTL 267
Query: 321 FDRGFGPEISKILNPLK 337
FD F +IL +K
Sbjct: 268 FDESFYERSLEILEKIK 284
>gi|333916134|ref|YP_004489866.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333746334|gb|AEF91511.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 504
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
L+Q L R E HP RA+VL T E ADQ
Sbjct: 61 LLQ------------------RLMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQY 102
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEA
Sbjct: 103 AKYTKLRSTVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEA 162
Query: 318 DTLFDRGFGPEISKILNPL 336
D + D GF P++ +IL+ L
Sbjct: 163 DRMLDIGFLPDLQRILSHL 181
>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 504
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 19/199 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLQLAESLARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
L+Q L R E HP RA+VL T E ADQ
Sbjct: 61 LLQ------------------RLMRHENTSASPARHPVRALVLLPTRELADQVAQQIAQY 102
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEA
Sbjct: 103 AKYTKLRSTVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEA 162
Query: 318 DTLFDRGFGPEISKILNPL 336
D + D GF P++ +IL+ L
Sbjct: 163 DRMLDIGFLPDLQRILSHL 181
>gi|194364258|ref|YP_002026868.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia R551-3]
gi|194347062|gb|ACF50185.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 471
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+E + P PRA++L T E A Q + S
Sbjct: 62 HLGTASQE------------------VRTGPRKPRALILAPTRELATQVHDSLRGYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S+ GGV D+ + +L+A P ++ H+E R++ I +VLDEAD +
Sbjct: 104 RIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P I +IL L Q QT+L +A
Sbjct: 164 DMGFLPSIKRILAKLPK-------QNRQTLLFSATF 192
>gi|430809219|ref|ZP_19436334.1| RNA helicase [Cupriavidus sp. HMR-1]
gi|429498363|gb|EKZ96873.1| RNA helicase [Cupriavidus sp. HMR-1]
Length = 498
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 33/201 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ GL +++A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFESFGLDPRVLRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 75
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HM 253
LLP+ HP RA++L T E ADQ + ++
Sbjct: 76 ------------------------RLLPLANASASPARHPVRALMLTPTRELADQVYDNV 111
Query: 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
A++ H L S++ GGV D + +L+ATP +L H++ ++V+ ++ +V
Sbjct: 112 ARYAKHTD-LRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLV 170
Query: 314 LDEADTLFDRGFGPEISKILN 334
LDEAD + D GF P++ +I+N
Sbjct: 171 LDEADRMLDMGFLPDLQRIIN 191
>gi|393762574|ref|ZP_10351201.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
gi|392606809|gb|EIW89693.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
Length = 444
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 114/215 (53%), Gaps = 28/215 (13%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ++GL ++++V+ +G P+EIQ IPAV+ G+ +++SS +GSG+TLAYLLP++Q
Sbjct: 3 FQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLPMMQR 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ ++ L + +A RA++L T E A Q + +
Sbjct: 63 LLK------------SRALSKQDA---------RALILTPTRELAKQVYAQLRLFVANTP 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ + + GG + E + +++ATP + H+E ++V + ++LDEAD + D
Sbjct: 102 VTAVLLVGGENFNDQEKLLKRQPDIIVATPGRFVDHLEHKSVFLQGLEMLILDEADRMLD 161
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
GF P+++ I+N D L+ QT+L +A +
Sbjct: 162 LGFLPQLT-IINKAADHRLR------QTLLFSATL 189
>gi|192362464|ref|YP_001982184.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
gi|190688629|gb|ACE86307.1| Superfamily II DNA and RNA helicase [Cellvibrio japonicus Ueda107]
Length = 474
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 126/256 (49%), Gaps = 34/256 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL+A++++A+ G P+ IQ IPAV+NG ++ ++ +G+G+T + LPL++
Sbjct: 2 SFESLGLRADILRAIADEGYSAPTPIQQQAIPAVINGGDILAAAQTGTGKTAGFTLPLLE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
SQ D G T RR P+ RA++L T E A Q +
Sbjct: 62 KLSQRDP-------GKTPQGRR-----PV-----RALILTPTRELAAQVHDSVRTYGKYL 104
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
RL S++ GGVS + +L+ATP +L + V D+ +VLDEAD +
Sbjct: 105 RLRSAVVFGGVSINPQMMTLRGGVDILVATPGRLLDLVNQNAVYLQDVEILVLDEADRML 164
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTA-------AIAEMLGEQLSSLMECLER 374
D GF +I K+L L Q +L +A A+A+ L Q +L+E R
Sbjct: 165 DMGFIHDIKKVLALLPKQR--------QNLLFSATFSDDIKALADKLLNQ-PTLIEVARR 215
Query: 375 DNAG-KVTAMLLEMDQ 389
+ A +V+ +L +D+
Sbjct: 216 NTASERVSQRVLPVDR 231
>gi|337278667|ref|YP_004618138.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729743|gb|AEG92119.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 486
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 103/200 (51%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 8 MTDSFSNLSLAEPLARAVAEMGYETMTPIQAQAIPVVLTGRDVMGAAQTGTGKTAAFSLP 67
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRR-DEALLPMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q ++L+ + + P + HP RA+VL T E ADQ K
Sbjct: 68 LLQ-----------------RLLKHENSSTSPAR--HPVRALVLLPTRELADQVAQQVKL 108
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L S++ GG+ K + +L+ATP +L HIE +N + YVVLDE
Sbjct: 109 YAKYTNLRSAVVFGGMDMKPQTLELKRGVEVLVATPGRLLDHIEAKNAVLGQVEYVVLDE 168
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +IL+ L
Sbjct: 169 ADRMLDIGFLPDLQRILSYL 188
>gi|91787410|ref|YP_548362.1| DEAD/DEAH box helicase [Polaromonas sp. JS666]
gi|91696635|gb|ABE43464.1| DEAD/DEAH box helicase-like protein [Polaromonas sp. JS666]
Length = 492
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 104/200 (52%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q +ML+ + A P + HP RA+VL T E A Q K
Sbjct: 61 LLQ-----------------RMLKHENASTSPAR--HPVRALVLLPTRELAVQVAEQVKL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDE
Sbjct: 102 YAKHTNLRSAVVFGGMDMKPQTLELKQGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +IL+ L
Sbjct: 162 ADRMLDIGFLPDLQRILSYL 181
>gi|84393512|ref|ZP_00992267.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
gi|84375865|gb|EAP92757.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
Length = 423
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 18/202 (8%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E SF +LGL +++ + ++ P+ +Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SESTRSFNQLGLSEQLLTTLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LP++Q +++ + ++P P RA+VL T E A Q F
Sbjct: 62 LPIIQ-----------------RLIETKDNVIP-NPKLVRALVLVPTRELAQQVFDNVTS 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ + + GGVS K D +L+ATP ++ H+ +N+ +VLDE
Sbjct: 104 YAKGTDIKVVVAYGGVSMKVQTDNLRGGADILVATPGRLIDHMFTKNIMLSQTEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPLKD 338
AD + D GF P+I +IL+ + D
Sbjct: 164 ADRMLDMGFMPDIKRILSRMND 185
>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
Length = 780
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 31/252 (12%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E KP +P Q + +K E + +F+EL L ++KAV+K+G P+ IQ
Sbjct: 150 EIKPVNNKPVQNDKIKLLQSNKKMKKIVEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQ 209
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL 228
IP LNGK ++ S+ +GSG+T A+LLP+++ ++L RD
Sbjct: 210 AKTIPLALNGKDILASASTGSGKTAAFLLPILE-----------------RLLFRDSEYR 252
Query: 229 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGML 288
+ R +VL T E A Q + + ++ + + S + GG+S+KA E ++
Sbjct: 253 AI-----RVLVLLPTRELALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVELRKRPDVV 307
Query: 289 IATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347
IATP ++ H+ + + +D+ ++LDEAD L D GF EI+KI++ S
Sbjct: 308 IATPGRLIDHLLNAHGIGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTSR------- 360
Query: 348 FQTILVTAAIAE 359
QT+L +A + +
Sbjct: 361 -QTMLFSATLND 371
>gi|126442203|ref|YP_001058242.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|167901897|ref|ZP_02489102.1| DEAD/DEAH box helicase [Burkholderia pseudomallei NCTC 13177]
gi|237811490|ref|YP_002895941.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|126221696|gb|ABN85202.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|237505268|gb|ACQ97586.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
Length = 481
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 129/260 (49%), Gaps = 34/260 (13%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC----- 371
AD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 170 ADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIE 221
Query: 372 LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 222 VARSNAAASTVTQIVYDVAE 241
>gi|53718749|ref|YP_107735.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei K96243]
gi|53725492|ref|YP_103512.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67643786|ref|ZP_00442529.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599991|ref|YP_992380.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124383787|ref|YP_001026818.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126449417|ref|YP_001079898.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|126454058|ref|YP_001065480.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|134281039|ref|ZP_01767748.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|167893438|ref|ZP_02480840.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 7894]
gi|217419830|ref|ZP_03451336.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|242317719|ref|ZP_04816735.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|386862473|ref|YP_006275422.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403517911|ref|YP_006652044.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418390012|ref|ZP_12967823.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|418538110|ref|ZP_13103738.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|418541611|ref|ZP_13107086.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|418547854|ref|ZP_13112990.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|418554032|ref|ZP_13118832.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|52209163|emb|CAH35107.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
K96243]
gi|52428915|gb|AAU49508.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|121228801|gb|ABM51319.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124291807|gb|ABN01076.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126227700|gb|ABN91240.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|126242287|gb|ABO05380.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|134247345|gb|EBA47430.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|217397134|gb|EEC37150.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238525219|gb|EEP88647.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|242140958|gb|EES27360.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385348870|gb|EIF55466.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026a]
gi|385357533|gb|EIF63583.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258a]
gi|385359528|gb|EIF65484.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1258b]
gi|385370979|gb|EIF76201.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354e]
gi|385375790|gb|EIF80532.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 354a]
gi|385659601|gb|AFI67024.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1026b]
gi|403073554|gb|AFR15134.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 482
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 129/260 (49%), Gaps = 34/260 (13%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC----- 371
AD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 170 ADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIE 221
Query: 372 LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 222 VARSNAAASTVTQIVYDVAE 241
>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
Length = 489
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRR-DEALLPMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q ++L+ + + P + HP RA+VL T E ADQ
Sbjct: 61 LLQ-----------------RLLKHENSSTSPAR--HPVRALVLLPTRELADQVAQQIAL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDE
Sbjct: 102 YAKYTKLRSTVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +IL+ L
Sbjct: 162 ADRMLDIGFLPDLQRILSYL 181
>gi|83746502|ref|ZP_00943553.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|83726833|gb|EAP73960.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
Length = 566
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 87 TFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKTAGFSLPIIQ 146
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 259
+ L E + + P + HP RA++L T E ADQ + ++AK+ +
Sbjct: 147 --NLLPEA--------------NTSASPAR--HPVRALILTPTRELADQVYDNVAKYAKY 188
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 189 TA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 247
Query: 320 LFDRGFGPEISKILN 334
+ D GF P++ +I+N
Sbjct: 248 MLDMGFLPDLQRIIN 262
>gi|375264486|ref|YP_005021929.1| ATP-dependent RNA helicase SrmB [Vibrio sp. EJY3]
gi|369839810|gb|AEX20954.1| ATP-dependent RNA helicase SrmB [Vibrio sp. EJY3]
Length = 407
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L + ++ A+E+MG P+++Q IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDSNLLDAIEEMGFERPTKVQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++IE C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLREYIEAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|384426420|ref|YP_005635777.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
gi|341935520|gb|AEL05659.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. raphani
756C]
Length = 462
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL G T P+ P PRA++L T E A Q + S
Sbjct: 62 ---------HL---GTTPQ--------PVNGPRKPRALILTPTRELATQVHDSLRGYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 102 LRIPSAVIYGGVGMGNQLDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 161
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 162 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|387772360|ref|ZP_10128308.1| DEAD/DEAH box helicase [Haemophilus parahaemolyticus HK385]
gi|386906617|gb|EIJ71343.1| DEAD/DEAH box helicase [Haemophilus parahaemolyticus HK385]
Length = 445
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 104/194 (53%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++++F+EL L +++KA+ + G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP
Sbjct: 7 ILTTFEELDLSTQLLKALNEKGYKRPTSVQAQTIPHALDGQDLLGSAPTGTGKTAAFLLP 66
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 67 AIQ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEQAETLA 105
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L + GGV+ + ++ N+ +++ATP ++Q+I++ N C + ++ DEAD
Sbjct: 106 KFTKLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEAD 165
Query: 319 TLFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 166 RMLQMGFGQDAEKI 179
>gi|145636310|ref|ZP_01791979.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
gi|145270475|gb|EDK10409.1| ATP-dependent RNA helicase [Haemophilus influenzae PittHH]
Length = 439
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 116/236 (49%), Gaps = 32/236 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL D + P PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HLL----------DYPRRKLGP--PRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
+ GFG + KI A ++ + QT+L +A + GE L E L D
Sbjct: 162 MLQMGFGQDAEKI-------AAETRWRK-QTLLFSATLE---GELLVDFAERLLND 206
>gi|83952321|ref|ZP_00961053.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
gi|83837327|gb|EAP76624.1| ATP-dependent RNA helicase RhlE [Roseovarius nubinhibens ISM]
Length = 552
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 22/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F EL L A+++KA+++ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSELNLNAKVLKAIDEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q S
Sbjct: 61 LS------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYSK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K E + + + +LIATP +L H E + D++ +V+DEAD
Sbjct: 99 HLKLTKALLIGGVSFKEQEQIIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADR 158
Query: 320 LFDRGFGPEISKIL 333
+ D GF P+I +I
Sbjct: 159 MLDMGFIPDIERIF 172
>gi|427400760|ref|ZP_18891998.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
gi|425720273|gb|EKU83196.1| hypothetical protein HMPREF9710_01594 [Massilia timonae CCUG 45783]
Length = 523
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 132/263 (50%), Gaps = 34/263 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + GL E+ +A+ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q+
Sbjct: 42 FADFGLAPEIQRALSDQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTASFSLPILQL 101
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
M + ++ P + HP RA+VL T E A Q K +
Sbjct: 102 L----------------MPHANASMSPAR--HPVRALVLVPTRELAVQVADNVKAYARHT 143
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L +++ GG+ K ++ + ++IATP +L HIE +NVS ++ +V+DEAD +
Sbjct: 144 PLRATVVFGGMDMKPQTEILRRGVEIVIATPGRLLDHIEQKNVSLGQVQMLVMDEADRML 203
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-----LERDN 376
D GF P++ +I+N L Q ++ +A + + + ++ + + R N
Sbjct: 204 DMGFLPDLQRIINLLPKQR--------QNLMFSATFSPEIKKLANTFLNNPLTIEVARSN 255
Query: 377 AG--KVTAMLLEMDQAEVFDLTE 397
A KVT ++ ++D+ + D+ E
Sbjct: 256 ATAEKVTQIVYKVDEEQKRDVVE 278
>gi|94311518|ref|YP_584728.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93355370|gb|ABF09459.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 556
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 106/203 (52%), Gaps = 33/203 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ GL +++A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP++Q
Sbjct: 74 TFESFGLDPRILRALTEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 133
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HM 253
LLP+ HP RA++L T E ADQ + ++
Sbjct: 134 ------------------------RLLPLANASASPARHPVRALMLTPTRELADQVYDNV 169
Query: 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
A++ H L S++ GGV D + +L+ATP +L H++ ++V+ ++ +V
Sbjct: 170 ARYAKHTD-LRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLV 228
Query: 314 LDEADTLFDRGFGPEISKILNPL 336
LDEAD + D GF P++ +I+N L
Sbjct: 229 LDEADRMLDMGFLPDLQRIINLL 251
>gi|76808776|ref|YP_332762.1| ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 1710b]
gi|76578229|gb|ABA47704.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
1710b]
Length = 559
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 129/260 (49%), Gaps = 34/260 (13%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 86 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 145
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 146 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 187
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 188 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 246
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC----- 371
AD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 247 ADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIE 298
Query: 372 LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 299 VARSNAAASTVTQIVYDVAE 318
>gi|387769211|ref|ZP_10125477.1| DEAD/DEAH box helicase [Pasteurella bettyae CCUG 2042]
gi|386907167|gb|EIJ71882.1| DEAD/DEAH box helicase [Pasteurella bettyae CCUG 2042]
Length = 445
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S F++ L E++KA+ K G P+ IQ IPA ++ + ++ S+ +G+G+T A+LLP +
Sbjct: 4 SQFEDFELAPELLKALAKKGYTRPTAIQLEAIPAAMDARDILGSAPTGTGKTAAFLLPAI 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 64 Q---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAQQAEELAQF 102
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++LDEAD +
Sbjct: 103 TNLSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILILDEADRM 162
Query: 321 FDRGFGPEISKI 332
GFG + KI
Sbjct: 163 LQMGFGQDAEKI 174
>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 491
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRR-DEALLPMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q ++L+ + + P + HP RA+VL T E ADQ
Sbjct: 61 LLQ-----------------RLLKHENSSTSPAR--HPVRALVLLPTRELADQVAQQIAL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDE
Sbjct: 102 YAKYTKLRSTVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +IL+ L
Sbjct: 162 ADRMLDIGFLPDLQRILSYL 181
>gi|299066188|emb|CBJ37372.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
CMR15]
Length = 481
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 105/197 (53%), Gaps = 21/197 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G + IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 2 TFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGTGKTAGFSLPIIQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 259
L D + HP RA++L T E ADQ + ++AK+ H
Sbjct: 62 ------------------NLLPDASTSASPARHPVRALILTPTRELADQVYDNVAKYAKH 103
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 104 TA-LRSAVVFGGVDMNPQTEQLRRGVEVLVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 162
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF P++ +I+N L
Sbjct: 163 MLDMGFLPDLQRIINLL 179
>gi|294625538|ref|ZP_06704165.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294663958|ref|ZP_06729380.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|381170549|ref|ZP_09879705.1| ATP-dependent RNA helicase RhlE [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|418517745|ref|ZP_13083904.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|292600152|gb|EFF44262.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292606274|gb|EFF49503.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|380689006|emb|CCG36192.1| ATP-dependent RNA helicase RhlE [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|410705589|gb|EKQ64060.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 460
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL T P PRA++L T E A Q + S
Sbjct: 62 ---------HLGTAPQTVN----------GPRKPRALILTPTRELATQVHDSLRGYSKYL 102
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 103 RIPSAVIYGGVGMGNQLDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRML 162
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 163 DMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|407940452|ref|YP_006856093.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407898246|gb|AFU47455.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
Length = 490
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRR-DEALLPMKPMHP-RAIVLCTTEESADQGFHMAKF 256
L+Q ++L+ + + P + HP RA+VL T E ADQ
Sbjct: 61 LLQ-----------------RLLKHENSSTSPAR--HPVRALVLLPTRELADQVAQQIAL 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDE
Sbjct: 102 YAKHTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDE 161
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +IL+ L
Sbjct: 162 ADRMLDIGFLPDLQRILSYL 181
>gi|424902637|ref|ZP_18326153.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
gi|390933012|gb|EIP90412.1| ATP-dependent RNA helicase 2 [Burkholderia thailandensis MSMB43]
Length = 482
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 131/260 (50%), Gaps = 34/260 (13%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM---ECLE 373
AD + D GF P++ +ILN L QT+L +A + + + S+ + + +E
Sbjct: 170 ADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLRDPQTIE 221
Query: 374 --RDNAGKVTAMLLEMDQAE 391
R NA T + D AE
Sbjct: 222 VARSNAAASTVTQIVYDVAE 241
>gi|21244335|ref|NP_643917.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21109989|gb|AAM38453.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 460
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL T P PRA++L T E A Q + S
Sbjct: 62 ---------HLGTAPQTVN----------GPRKPRALILTPTRELATQVHDSLRGYSKYL 102
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 103 RIPSAVIYGGVGMGNQLDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRML 162
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 163 DMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|351730076|ref|ZP_08947767.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 498
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYESMTPIQEQAIPVVLTGQDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
L+Q L + E+ HP RA+VL T E ADQ
Sbjct: 61 LLQ------------------RLLKHESSSTSPARHPVRALVLLPTRELADQVAQQIALY 102
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ +L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEA
Sbjct: 103 AKYTKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEA 162
Query: 318 DTLFDRGFGPEISKILNPL 336
D + D GF P++ +IL+ L
Sbjct: 163 DRMLDIGFLPDLQRILSYL 181
>gi|300690871|ref|YP_003751866.1| DEAD/DEAH box helicase [Ralstonia solanacearum PSI07]
gi|299077931|emb|CBJ50571.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia solanacearum
PSI07]
gi|344167288|emb|CCA79493.1| ATP-dependent RNA helicase, deaD-box family [blood disease
bacterium R229]
Length = 495
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 110/197 (55%), Gaps = 21/197 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 16 TFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQ 75
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 259
+ L E + + P + HP RA++L T E ADQ + ++AK+ +
Sbjct: 76 --NLLPEA--------------NTSASPAR--HPVRALILTPTRELADQVYDNVAKYGKY 117
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 118 TA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 176
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF P++ +I+N L
Sbjct: 177 MLDMGFLPDLQRIINLL 193
>gi|260363591|ref|ZP_05776411.1| DEAD/DEAH box helicase [Vibrio parahaemolyticus K5030]
gi|308113318|gb|EFO50858.1| DEAD/DEAH box helicase [Vibrio parahaemolyticus K5030]
Length = 305
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I ++VLDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|418520909|ref|ZP_13086956.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410703332|gb|EKQ61826.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
Length = 460
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL T P PRA++L T E A Q + S
Sbjct: 62 ---------HLGTAPQTVN----------GPRKPRALILTPTRELATQVHDSLRGYSKYL 102
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 103 RIPSAVIYGGVGMGNQLDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRML 162
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 163 DMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|254438460|ref|ZP_05051954.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
gi|198253906|gb|EDY78220.1| DEAD/DEAH box helicase domain protein [Octadecabacter antarcticus
307]
Length = 530
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 22/192 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +L L A+++KAVE+ G P+ IQ IP L G+ V+ + +G+G+T + LP++
Sbjct: 4 FSDLKLDAKVLKAVEETGYTTPTPIQAGAIPPALEGRDVLGIAQTGTGKTAGFTLPMIT- 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
ML+R A M PR++VL T E A Q + +
Sbjct: 63 -----------------MLKRGRARARM----PRSLVLAPTRELAAQVAENFDTYAKYTK 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L ++ GGVS K +++ + + +LIATP +L H E + D++ +V+DEAD + D
Sbjct: 102 LTKALLIGGVSFKEQDNLIDRGVDVLIATPGRLLDHFERGKLILSDVKIMVVDEADRMLD 161
Query: 323 RGFGPEISKILN 334
GF P+I +I
Sbjct: 162 MGFIPDIERIFG 173
>gi|89901799|ref|YP_524270.1| DEAD/DEAH box helicase-like protein [Rhodoferax ferrireducens T118]
gi|89346536|gb|ABD70739.1| DEAD/DEAH box helicase-like [Rhodoferax ferrireducens T118]
Length = 506
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 21/197 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +L L A + +AV MG + IQ IP VL G+ V+ ++ +G+G+T A+ LPL+Q
Sbjct: 16 AFAQLQLAAPLARAVADMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLLQ 75
Query: 202 VYSQLDEEHHLQLVGITQMLRR-DEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISH 259
+ML+ + + P + HP RA+VL T E ADQ K +
Sbjct: 76 -----------------RMLKHENSSTSPAR--HPVRALVLLPTRELADQVAQAIKDYAV 116
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEAD
Sbjct: 117 HTNLRSAVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADR 176
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF P++ +IL+ L
Sbjct: 177 MLDIGFLPDLQRILSYL 193
>gi|344171941|emb|CCA84567.1| ATP-dependent RNA helicase, deaD-box family [Ralstonia syzygii R24]
Length = 481
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 110/197 (55%), Gaps = 21/197 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V+ G+ V+ ++ +G+G+T + LP++Q
Sbjct: 2 TFDTFGLHPDILRALAESGYTRPTPIQAAAIPVVVAGRDVMGAAQTGTGKTAGFSLPIIQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 259
+ L E + + P + HP RA++L T E ADQ + ++AK+ +
Sbjct: 62 --NLLPEA--------------NTSASPAR--HPVRALILTPTRELADQVYDNVAKYGKY 103
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 104 TA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 162
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF P++ +I+N L
Sbjct: 163 MLDMGFLPDLQRIINLL 179
>gi|149192208|ref|ZP_01870425.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
gi|148833966|gb|EDL50986.1| ATP-dependent RNA helicase SrmB [Vibrio shilonii AK1]
Length = 407
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P+EIQ IP L+ K ++ S+ +G+G+T ++ +P
Sbjct: 1 MIRTFAELDLDPVLLEAIEEMGYSRPTEIQAQAIPQALDAKDILASAPTGTGKTASFAIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P K P R +VL T E A Q K +
Sbjct: 61 AIQYL--LD--------------------FPRKKAGPARILVLTPTRELAMQVAEHTKAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL + GGV+ D +++ATP ++++IE C I ++VLDEA
Sbjct: 99 AKHTRLKVATITGGVTYDTHADTLAQTQDIVVATPGRLMEYIESERFDCRAIEWLVLDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDLGFGPTVDRL 173
>gi|417954611|ref|ZP_12597643.1| ATP-dependent RNA helicase SrmB [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342814887|gb|EGU49818.1| ATP-dependent RNA helicase SrmB [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 412
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L ++ A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRNFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARVLILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP ++++I C I +++LDEAD
Sbjct: 100 KHTKLNIFTITGGVQYQEHADILGKTQDIVVATPGRLMEYINAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKI 332
+ D GFGP + ++
Sbjct: 160 RMLDMGFGPTVDRL 173
>gi|323491504|ref|ZP_08096686.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
gi|323314258|gb|EGA67340.1| ATP-dependent RNA helicase SrmB [Vibrio brasiliensis LMG 20546]
Length = 411
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L ++ A+E+MG P++IQ IP L+G+ V+ S+ +G+G+T A+ LP
Sbjct: 1 MIRNFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFALP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q + RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQF--------------LQDFPRR-------KPGPARVLILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L+ GGV + D+ +++ATP ++++IE C I +++LDEAD
Sbjct: 100 KHTNLNIFTITGGVQYQEHADILATTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKI 332
+ D GFGP + ++
Sbjct: 160 RMLDMGFGPTVDRL 173
>gi|421899355|ref|ZP_16329720.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206590561|emb|CAQ37523.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
Length = 633
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 130/261 (49%), Gaps = 22/261 (8%)
Query: 115 PQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA 174
PQ + +++ S+ S N S+F LGL +++A+ ++ P+ +Q IPA
Sbjct: 36 PQLDGGAIAHTESDTPNSDALNTTAASAFAALGLDERIVRALGEVNYTTPTPVQAQAIPA 95
Query: 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLR-RDEALLPMKP- 232
L+G+ ++++S +GSG+T A++LP +Q S+ E ++ G Q ++ R P KP
Sbjct: 96 CLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQRPRVDGAPQRVKGRRPRPAPAKPS 155
Query: 233 ---MHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGML 288
+ P R + L T +A G H+ + + CA S+ G K L+ ++ P ++
Sbjct: 156 LLVLTPTRELALQVTTATAQYGRHLRRIV--CA----SILGGMPYPKQLDMLARMP-DII 208
Query: 289 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 348
IATP +L HI+ + + +V DEAD + D GF +I I+ +S
Sbjct: 209 IATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADDIEAIVGATPES--------- 259
Query: 349 QTILVTAAIAEMLGEQLSSLM 369
+ +L+ +A + EQL+ M
Sbjct: 260 RQMLMFSATMDRRIEQLAERM 280
>gi|152992308|ref|YP_001358029.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
gi|151424169|dbj|BAF71672.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
Length = 447
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 124/254 (48%), Gaps = 41/254 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF L L + + +E G P+ IQ IPA+L+G++ + S+ +GSG+TLAYLLP +Q
Sbjct: 2 SFASLKLSTALTELLEGEGYARPTPIQQKLIPALLDGQNAIASAQTGSGKTLAYLLPALQ 61
Query: 202 VYSQLDEE-----HHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
Q++ E HH +PR +L T+E A Q + +++
Sbjct: 62 ---QINPEAEKVTHH----------------------YPRLFILSPTKELAQQIYEVSRP 96
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L+ + GG + + ++IATP L+HIE +++ IR++V+DE
Sbjct: 97 FVNALDLNVVLLQGGGRRTVETERLKKGVDVIIATPQRALEHIEAQHIDIKAIRHLVVDE 156
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER-- 374
AD +FD GF + KI + + + Q I+V+A I + + + ++ L+R
Sbjct: 157 ADMMFDMGFVGYLEKIFTMMTERS--------QKIIVSATITPRVIKLAKTYIKPLKRIE 208
Query: 375 -DNAGKVTAMLLEM 387
D GK+ + +M
Sbjct: 209 LDPPGKIADTITQM 222
>gi|384918672|ref|ZP_10018741.1| ATP-dependent RNA helicase RhlE [Citreicella sp. 357]
gi|384467385|gb|EIE51861.1| ATP-dependent RNA helicase RhlE [Citreicella sp. 357]
Length = 487
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 128/277 (46%), Gaps = 42/277 (15%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L R A M PR++VLC T E A Q +
Sbjct: 61 IT------------------SLARGRARARM----PRSLVLCPTRELAAQVAENFDTYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K E + + + +LIATP +L H E + D++ +V+DEAD
Sbjct: 99 YVKLTKALLIGGVSFKEQETLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADR 158
Query: 320 LFDRGFGPEISKI--LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 377
+ D GF P+I +I L P QT+ +A +A + ++ + ER
Sbjct: 159 MLDMGFIPDIERIFSLTPFTR----------QTLFFSATMAPEIERITNTFLSNPERIEV 208
Query: 378 GKVTAMLLEMDQAEVF--------DLTESQDALKKKV 406
+ + + Q VF + TE +D L+K +
Sbjct: 209 ARQASASETITQGAVFFKASRRDREATEKRDILRKLI 245
>gi|336125600|ref|YP_004577556.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335343317|gb|AEH34599.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 421
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 34/244 (13%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
++ V FQ LGL ++ A++ +G P+++Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SDTVHPFQRLGLSTTLVSALQSLGFEQPTDVQSQAIPHVLAGKDVMAGAQTGTGKTAAFG 61
Query: 197 LPLVQVY--SQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 254
LP++Q + +Q + E + ++V RA+VL T E A Q F
Sbjct: 62 LPILQRFLDNQAEREANSKVV--------------------RALVLVPTRELAQQVFDSL 101
Query: 255 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ L GG S + +LIATP ++ H+ RN+ +VL
Sbjct: 102 SAYAQGTTLKIVTAYGGTSMQVQTRNLRGGADILIATPGRLIDHLFVRNIILTQTEVLVL 161
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
DEAD + D GF P+I +IL + D QT+ +A +++ +L + R
Sbjct: 162 DEADRMLDMGFLPDIQRILKRMNDER--------QTLFFSAT----FDDKIKALAHKMMR 209
Query: 375 DNAG 378
D G
Sbjct: 210 DPVG 213
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++KA+++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 12 TFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 71
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISH 259
+ + + + P + HP RA++L T E ADQ ++ + H
Sbjct: 72 RL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVQAYAKH 113
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV D + +LIATP +L H++ + + ++ +VLDEAD
Sbjct: 114 TA-LRSAVVFGGVDMNPQSDQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADR 172
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF P++ +ILN L
Sbjct: 173 MLDMGFLPDLQRILNLL 189
>gi|438000180|ref|YP_007183913.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813113|ref|YP_007449566.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339414|gb|AFZ83836.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779082|gb|AGF49962.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 447
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 107/196 (54%), Gaps = 17/196 (8%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
SSF+E GL ++ ++++G P+ IQ IP +L+G + ++ +G+G+T A++LP++
Sbjct: 14 SSFREFGLDFSIVSVLDEIGYVKPTLIQESAIPNILSGADFIGAAQTGTGKTAAFVLPII 73
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+LV + ++ P + + R+++L T E ADQ + K S
Sbjct: 74 N-----------RLVPFA-----NNSISPARHL-LRSLILVPTRELADQVYECVKLYSKN 116
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S + GGV + +D+ + +L+ATP ++ HI RNVS ++ +VLDEAD +
Sbjct: 117 TNLRSLVLFGGVDLEHQKDLLHKGCEILVATPGRLIAHIIQRNVSLVNVDILVLDEADRM 176
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +I+ L
Sbjct: 177 LDMGFIPDVDRIVRML 192
>gi|78049289|ref|YP_365464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325928526|ref|ZP_08189714.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
gi|346726385|ref|YP_004853054.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
gi|78037719|emb|CAJ25464.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325541065|gb|EGD12619.1| DNA/RNA helicase, superfamily II [Xanthomonas perforans 91-118]
gi|346651132|gb|AEO43756.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 462
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL T P PRA++L T E A Q + S
Sbjct: 62 ---------HLGTAPQTVN----------GPRKPRALILTPTRELATQVHDSLRGYSKYL 102
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 103 RIPSAVIYGGVGMGNQLDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRML 162
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 163 DMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|343492178|ref|ZP_08730551.1| ATP-dependent RNA helicase SrmB [Vibrio nigripulchritudo ATCC
27043]
gi|342827518|gb|EGU61906.1| ATP-dependent RNA helicase SrmB [Vibrio nigripulchritudo ATCC
27043]
Length = 409
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIRTFAELELDPNLLEAIEEMGYERPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYLQDF----------------------PRRKAGPARILILTPTRELAMQVTDQARAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ L GGV + D+ + +++ATP ++++IE C I ++VLDEA
Sbjct: 99 AKYTNLKIFTITGGVQYQEHADILSTTQDIVVATPGRLMEYIEAERFDCRAIEWLVLDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|421750235|ref|ZP_16187502.1| helicase, partial [Cupriavidus necator HPC(L)]
gi|409770743|gb|EKN53287.1| helicase, partial [Cupriavidus necator HPC(L)]
Length = 423
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 33/203 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL +++A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP++Q
Sbjct: 20 TFDSFGLDPRVLRALSEQGYTKPTPIQAQAIPVVLLGKDVMGAAQTGTGKTAGFALPIIQ 79
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGF-HM 253
LLP+ HP RA++L T E ADQ + ++
Sbjct: 80 ------------------------RLLPLANASASPARHPVRALMLTPTRELADQVYDNV 115
Query: 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
A++ H L S++ GGV D + +L+ATP +L H++ ++V+ ++ +V
Sbjct: 116 ARYARHTD-LRSTVVFGGVDMNPQTDALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLV 174
Query: 314 LDEADTLFDRGFGPEISKILNPL 336
LDEAD + D GF P++ +I+N L
Sbjct: 175 LDEADRMLDMGFLPDLQRIINLL 197
>gi|114764595|ref|ZP_01443799.1| ATP-dependent RNA helicase RhlE [Pelagibaca bermudensis HTCC2601]
gi|114542971|gb|EAU45991.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. HTCC2601]
Length = 502
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 119/256 (46%), Gaps = 34/256 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L R A M PR++VLC T E A Q +
Sbjct: 61 IT------------------SLARGRARARM----PRSLVLCPTRELAAQVAENFDTYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K E + + + +LIATP +L H E + D++ +V+DEAD
Sbjct: 99 YVKLTKALLIGGVSFKEQEQLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADR 158
Query: 320 LFDRGFGPEISKI--LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 377
+ D GF P+I +I L P QT+ +A +A + ++ + ER
Sbjct: 159 MLDMGFIPDIERIFSLTPFTR----------QTLFFSATMAPEIERITNTFLSNPERIEV 208
Query: 378 GKVTAMLLEMDQAEVF 393
+ ++Q VF
Sbjct: 209 ARQATASETIEQGAVF 224
>gi|390990131|ref|ZP_10260421.1| ATP-dependent RNA helicase RhlE [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555096|emb|CCF67396.1| ATP-dependent RNA helicase RhlE [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 460
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL T P PRA++L T E A Q + S
Sbjct: 62 ---------HLGTAPQTVN----------GPRKPRALILTPTRELATQVHDSLRGYSKYL 102
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 103 RIPSAVIYGGVGMGNQLDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRML 162
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 163 DMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 111/207 (53%), Gaps = 21/207 (10%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
S + V ++F + GL +++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+
Sbjct: 2 SDSAATSVDATFDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGK 61
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ- 249
T ++ LP++Q + + + + P + HP RA++L T E ADQ
Sbjct: 62 TASFSLPIIQRL----------------LPQANSSASPAR--HPVRALILTPTRELADQV 103
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
++ + H A L S++ GGV + + +LIATP +L H++ + + +
Sbjct: 104 AANVHAYAKHTA-LRSAVVFGGVDMNSQMAELRRGVEILIATPGRLLDHVQQKTANLGQV 162
Query: 310 RYVVLDEADTLFDRGFGPEISKILNPL 336
+ +VLDEAD + D GF P++ +ILN L
Sbjct: 163 QMLVLDEADRMLDMGFLPDLQRILNLL 189
>gi|356558698|ref|XP_003547640.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Glycine max]
Length = 778
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 34/223 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ LGL + K +++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P++
Sbjct: 20 FESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMLHR 79
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+Q H+ G+ RA++L T + A Q K + H
Sbjct: 80 LNQ-----HIPQSGV------------------RALILSPTRDLALQTLKFTKELGHFTD 116
Query: 263 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTL 320
L S+ GG S ++ E+++ +P ++IATP ++ H+ E ++S + YVV DEAD L
Sbjct: 117 LRVSLLVGGDSMESQFEELAQSP-DIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCL 175
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
F GF ++ +IL L G+ QT+L +A + L E
Sbjct: 176 FGMGFAEQLHQILAQL--------GENRQTLLFSATLPSALAE 210
>gi|330448349|ref|ZP_08311997.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492540|dbj|GAA06494.1| DEAD/DEAH box helicase family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 446
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 132/272 (48%), Gaps = 32/272 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++K + + +EIQ IP + GK ++ SS +GSG+TLA+LLP +Q
Sbjct: 3 FKDLGLDPRLLKKINHLAFDRATEIQHTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQ- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+M R P PR ++L T E A Q F + ++
Sbjct: 62 ----------------RMYRSK----PFTRRDPRVVILTPTRELAKQVFAQLRTLNAGTP 101
Query: 263 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
D ++ GG + + ++ + N P+ ++ATP + H+E R+ D + ++LDEAD +
Sbjct: 102 YDGTLIVGGENFNDQVKALRNDPM-FVVATPGRLADHLEHRSTHLDGLEMLILDEADRML 160
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AEMLGEQLSSLMECLERDNAGKV 380
D GF PE+ +I +N + QT++ +A + + + E S +++ +R + G
Sbjct: 161 DLGFAPELRRINEA-------ANHRRRQTLMFSATLDNQEVIEIASEMLDNPKRISIGHS 213
Query: 381 TAMLLEMDQAEVF-DLTESQDALKKKVVEAMD 411
++ Q + D + + AL KV+E D
Sbjct: 214 AEEHKDITQRFILCDHLDHKQALLDKVLETTD 245
>gi|289665420|ref|ZP_06487001.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 460
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL G + P+ P PRA++L T E A Q + S
Sbjct: 62 ---------HL---GTSPQ--------PVNGPRKPRALILTPTRELATQVHDSLRGYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 102 LRIPSAVIYGGVGMGNQLDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 161
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 162 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|301106809|ref|XP_002902487.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262098361|gb|EEY56413.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 470
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 15/221 (6%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SFQ+LG+ A + +++M + P+ IQ IPA+L ++ ++ +G+G+TLAYL+P++
Sbjct: 34 ASFQDLGVDARTVSGLKEMKITTPTGIQQKSIPAILARHDILCAAQTGTGKTLAYLVPVI 93
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
E L+ ++ R + + P A+VL + E A Q +AK +SH
Sbjct: 94 --------EQILRKEAAKKLERETKGPTEVVLGRPSALVLLPSRELALQVASVAKQLSHS 145
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE--DRNVSCDDIRYVVLDEAD 318
A+ S G + ++ + ++I TP V + I D VSC D VV+DEAD
Sbjct: 146 AKFASCTITSGERKSIQQKNTSRRLDLIIGTPGRVAKCISKGDFFVSCIDT--VVVDEAD 203
Query: 319 TLFDR--GFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
TLFD GF E+ +L ++ SA K N Q Q IL A I
Sbjct: 204 TLFDAKMGFRKELDAVLGTIQASAAKRN-QSLQMILAAATI 243
>gi|390570352|ref|ZP_10250619.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389937684|gb|EIM99545.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 486
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 103/202 (50%), Gaps = 33/202 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++
Sbjct: 11 ATFDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPII 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFH 252
Q LLP+ HP RA++L T E ADQ +
Sbjct: 71 Q------------------------RLLPLASTSASPARHPVRALILTPTRELADQVAAN 106
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H + L S++ GGV + +LIATP +L H++ + + ++ +
Sbjct: 107 VQAYAKHTS-LRSAVVFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQIL 165
Query: 313 VLDEADTLFDRGFGPEISKILN 334
VLDEAD + D GF P++ +ILN
Sbjct: 166 VLDEADRMLDMGFLPDLQRILN 187
>gi|28897279|ref|NP_796884.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
2210633]
gi|260876244|ref|ZP_05888599.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
gi|260896422|ref|ZP_05904918.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
gi|260902727|ref|ZP_05911122.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
gi|417321363|ref|ZP_12107903.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
gi|28805488|dbj|BAC58768.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus RIMD
2210633]
gi|308088406|gb|EFO38101.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus Peru-466]
gi|308092964|gb|EFO42659.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AN-5034]
gi|308107646|gb|EFO45186.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ4037]
gi|328472043|gb|EGF42920.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 10329]
Length = 407
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I ++VLDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 24/205 (11%)
Query: 137 AEVVSS---FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
AE+V++ F L L ++++A+ G + IQ IP VL+G+ V+ ++ +G+G+T
Sbjct: 8 AELVAAPARFDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTA 67
Query: 194 AYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGF 251
A+ LPL+Q +MLR + A P + HP RA+VL T E ADQ
Sbjct: 68 AFSLPLLQ-----------------KMLRHENASASPAR--HPVRALVLAPTRELADQVA 108
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
+ K + ++L + GG+ + +LIATP +L HI+ +N + + Y
Sbjct: 109 NNVKTYARHSQLRVTCVFGGIDMAPQTAELKRGVEVLIATPGRLLDHIQAKNCQLNQVEY 168
Query: 312 VVLDEADTLFDRGFGPEISKILNPL 336
VVLDEAD + D GF P++ +IL+ L
Sbjct: 169 VVLDEADRMLDIGFLPDLQRILSYL 193
>gi|222055835|ref|YP_002538197.1| DEAD/DEAH box helicase [Geobacter daltonii FRC-32]
gi|221565124|gb|ACM21096.1| DEAD/DEAH box helicase domain protein [Geobacter daltonii FRC-32]
Length = 446
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 22/212 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+ E++ A+ G +P+ IQ IP + G ++ + +G+G+T A+ LP+VQ
Sbjct: 2 SFDSLGLRVELLTAIASQGYTMPTPIQTQAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ E + P K PRA+VL T E A Q +
Sbjct: 62 MLG--------------------ENIPPEKRRRPRALVLVPTRELAAQVSEQMNNYARRL 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S+M GGV+ +A + + + +++ATP +L H E V+ I+++VLDEAD +
Sbjct: 102 SLRSTMIYGGVNIQAQIERLHRGVDIVVATPGRLLDHAERGTVNLSRIKFLVLDEADRML 161
Query: 322 DRGFGPEISKILN--PLKDSALKSNGQGFQTI 351
D GF I K+ P+K L + Q+I
Sbjct: 162 DLGFIDAIQKVAEYLPVKRQTLLFSATYSQSI 193
>gi|14090416|gb|AAK53492.1|AF204145_33 putative ATP-dependent RNA helicase [Xanthomonas campestris pv.
campestris]
Length = 202
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL G T P+ P PRA++L T E A Q + S
Sbjct: 62 ---------HL---GTTPQ--------PVNGPRKPRALILTPTRELATQVHDSLRGYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 102 LRIPSAVIYGGVGMGNQLDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 161
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 162 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|17546930|ref|NP_520332.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17429230|emb|CAD15918.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 495
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 21/207 (10%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
E +S + + +F GL ++++A+ + G + IQ IP V+ G+ V+ ++ +G+
Sbjct: 4 ETTSAAPSSDPVTFDTFGLHPDILRALAESGYTRATPIQAAAIPVVIAGRDVMGAAQTGT 63
Query: 190 GRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESAD 248
G+T + LP++Q L D HP RA++L T E AD
Sbjct: 64 GKTAGFSLPIIQ------------------NLLPDANTSASPARHPVRALILTPTRELAD 105
Query: 249 QGF-HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307
Q + ++AK+ H A L S++ GGV + + +L+ATP +L H++ R+V+
Sbjct: 106 QVYDNVAKYAKHTA-LRSAVVFGGVDMNPQTEQLRRGVEVLVATPGRLLDHVQQRSVNLS 164
Query: 308 DIRYVVLDEADTLFDRGFGPEISKILN 334
+R +VLDEAD + D GF P++ +I+N
Sbjct: 165 QVRMLVLDEADRMLDMGFLPDLQRIIN 191
>gi|83745783|ref|ZP_00942840.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|207743697|ref|YP_002260089.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|83727473|gb|EAP74594.1| ATP-dependent RNA helicase [Ralstonia solanacearum UW551]
gi|206595096|emb|CAQ62023.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 631
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 130/261 (49%), Gaps = 22/261 (8%)
Query: 115 PQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA 174
PQ + +++ S+ S N S+F LGL +++A+ ++ P+ +Q IPA
Sbjct: 36 PQLDGGAIAHTESDTPNSDALNTTAASAFAALGLDERIVRALGEVNYTTPTPVQAQAIPA 95
Query: 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLR-RDEALLPMKP- 232
L+G+ ++++S +GSG+T A++LP +Q S+ E ++ G Q ++ R P KP
Sbjct: 96 CLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQRPRVDGAPQRVKGRRPRPAPAKPS 155
Query: 233 ---MHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGML 288
+ P R + L T +A G H+ + + CA S+ G K L+ ++ P ++
Sbjct: 156 LLVLTPTRELALQVTTATAQYGRHLRRIV--CA----SILGGMPYPKQLDMLARMP-DII 208
Query: 289 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 348
IATP +L HI+ + + +V DEAD + D GF +I I+ +S
Sbjct: 209 IATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADDIEAIVGATPES--------- 259
Query: 349 QTILVTAAIAEMLGEQLSSLM 369
+ +L+ +A + EQL+ M
Sbjct: 260 RQMLMFSATMDRRIEQLAERM 280
>gi|410627588|ref|ZP_11338327.1| ATP-dependent RNA helicase rhlE [Glaciecola mesophila KMM 241]
gi|410153080|dbj|GAC25096.1| ATP-dependent RNA helicase rhlE [Glaciecola mesophila KMM 241]
Length = 412
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 116/254 (45%), Gaps = 31/254 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++L L E+ +AV +G P+ IQ + IPA + GK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
H P R ++L T E A Q ++ A +S
Sbjct: 62 LLDYPRRH---------------------PGSTRILILTPTRELAQQVYNQALELSRYTD 100
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ + GG++ D + +L+ATP + +HIE + C DI ++LDEAD + D
Sbjct: 101 IVCGVITGGINYGTDRDTFEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLD 160
Query: 323 RGFGPEISKILNPLKDSA-LKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE----RDNA 377
GF S I+N + A + F L A I+ + L+ +E LE R
Sbjct: 161 MGF----SSIVNQISAEARWRKQSMLFSATLEGAGISRFAKDILNDPVE-LEAASSRKEQ 215
Query: 378 GKVTAMLLEMDQAE 391
GK+ L D A+
Sbjct: 216 GKIHQWLHIADDAK 229
>gi|365539546|ref|ZP_09364721.1| ATP-dependent RNA helicase SrmB [Vibrio ordalii ATCC 33509]
Length = 393
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +I A+E MG P+++Q IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIKTFADLDLDPCIIAAIEDMGFERPTQVQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P K P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRKRAGPARVLILTPTRELAMQVADQAREL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP ++++IE C I +++LDEA
Sbjct: 99 AKNTRLNIVTITGGVQYQEHADILAKTQDIVVATPGRLMEYIEGERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPIVDRL 173
>gi|420246760|ref|ZP_14750191.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
gi|398073382|gb|EJL64557.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
Length = 411
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 33/204 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++
Sbjct: 11 ATFDQFGLHADILKAIAEQGYTTPTPIQAEAIPVVLGGRDVMGAAQTGTGKTAGFSLPII 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFH 252
Q LLP+ HP RA++L T E ADQ +
Sbjct: 71 Q------------------------RLLPLASTSASPARHPVRALILTPTRELADQVAAN 106
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H + L S++ GGV + +LIATP +L H++ + + ++ +
Sbjct: 107 VQAYAKHTS-LRSAVVFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQIL 165
Query: 313 VLDEADTLFDRGFGPEISKILNPL 336
VLDEAD + D GF P++ +ILN L
Sbjct: 166 VLDEADRMLDMGFLPDLQRILNLL 189
>gi|195437123|ref|XP_002066494.1| GK18312 [Drosophila willistoni]
gi|194162579|gb|EDW77480.1| GK18312 [Drosophila willistoni]
Length = 1424
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 21/204 (10%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K SG N + V +F+E L+ ++ ++K VP+ IQ V IP + G+ ++ + +GS
Sbjct: 1002 KVSGENPPKPVKTFEEAKLRDILMDNIKKSAYTVPTPIQKVSIPVISAGRDLMACAQTGS 1061
Query: 190 GRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
G+T A+LLP++ LD+ + L++ P+AI++ T E A Q
Sbjct: 1062 GKTAAFLLPILNHI--LDKGYELEI------------------GKPQAIIMSPTRELAVQ 1101
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
F+ A+ +H + L ++ GG S K + +LIATP +L +E ++ +D
Sbjct: 1102 IFNEARKFAHNSYLKITIVYGGTSVKYQNESITKGCHILIATPGRLLDFVERTFITFEDT 1161
Query: 310 RYVVLDEADTLFDRGFGPEISKIL 333
R+VVLDEAD + D GF + KI+
Sbjct: 1162 RFVVLDEADRMLDMGFSESMRKII 1185
>gi|410641783|ref|ZP_11352302.1| ATP-dependent RNA helicase rhlE [Glaciecola chathamensis S18K6]
gi|410647917|ref|ZP_11358334.1| ATP-dependent RNA helicase rhlE [Glaciecola agarilytica NO2]
gi|410132566|dbj|GAC06733.1| ATP-dependent RNA helicase rhlE [Glaciecola agarilytica NO2]
gi|410138685|dbj|GAC10489.1| ATP-dependent RNA helicase rhlE [Glaciecola chathamensis S18K6]
Length = 412
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 31/254 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++L L E+ +AV +G P+ IQ + IPA + GK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
H P R ++L T E A Q ++ A +S
Sbjct: 62 LLDYPRRH---------------------PGSTRILILTPTRELAQQVYNQALELSRYTD 100
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ + GG++ +D + +L+ATP + +HIE + C DI ++LDEAD + D
Sbjct: 101 IVCGVITGGINYGTDKDTLEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLD 160
Query: 323 RGFGPEISKILNPLKDSA-LKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE----RDNA 377
GF S I+N + A + F L A I+ + L+ +E LE R
Sbjct: 161 MGF----SSIVNQISAEARWRKQSMLFSATLEGAGISRFAKDILNDPVE-LEAASSRKEQ 215
Query: 378 GKVTAMLLEMDQAE 391
GK+ L D A+
Sbjct: 216 GKIHQWLHLADDAK 229
>gi|344939864|ref|ZP_08779152.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344261056|gb|EGW21327.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 441
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 27/196 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL E++KAV G P+ +Q IP +L GK V+ + +G+G+T ++ LPL+Q
Sbjct: 2 SFAQLGLADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHC 260
++ + H KP RA++L T E A Q + K + +H
Sbjct: 62 RLAENHDPHQ-------------------KPRRVRALILVPTRELAAQVYESVKTYGAHL 102
Query: 261 ARLDSSMENG---GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
++ G G+ ++ L + +++ATP ++ H++ RN++ ++ +VLDEA
Sbjct: 103 PFHAEAVVGGASIGIQTRQLRRGCD----IVVATPGRLIDHVQQRNINLSNVEVLVLDEA 158
Query: 318 DTLFDRGFGPEISKIL 333
D + D GF P+I +++
Sbjct: 159 DRMLDMGFLPDIKQLM 174
>gi|386265185|ref|YP_005828677.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846]
gi|309972421|gb|ADO95622.1| ATP-dependent RNA helicase [Haemophilus influenzae R2846]
Length = 439
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKSYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I+ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKAENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|84622357|ref|YP_449729.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84366297|dbj|BAE67455.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 460
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL G + P+ P PRA++L T E A Q + S
Sbjct: 62 ---------HL---GTSPQ--------PVNGPRKPRALILTPTRELATQVHDSLRGYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 102 LRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 161
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 162 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|323497774|ref|ZP_08102788.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
gi|323317121|gb|EGA70118.1| ATP-dependent RNA helicase SrmB [Vibrio sinaloensis DSM 21326]
Length = 398
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 101/194 (52%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L ++ A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRNFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARVLILTPTRELAMQVAEQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP ++++I C I +++LDEAD
Sbjct: 100 KHTKLNIFTITGGVQYQEHADILGKTQDVVVATPGRLMEYINAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKI 332
+ D GFGP + ++
Sbjct: 160 RMLDMGFGPTVDRL 173
>gi|114771133|ref|ZP_01448573.1| dead-box ATP-dependent RNA helicase [Rhodobacterales bacterium
HTCC2255]
gi|114548415|gb|EAU51301.1| dead-box ATP-dependent RNA helicase [alpha proteobacterium
HTCC2255]
Length = 531
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 36/223 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+F +LGL AE++KA+ +G +P+ IQ IPAVLN K +V + +G+G+T A+ LPL+
Sbjct: 103 SAFSKLGLDAEIVKALGFLGYTLPTPIQSQAIPAVLNSKDLVGLAQTGTGKTAAFALPLI 162
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q Q+L A+ K RAI+L T E A Q H A F+S
Sbjct: 163 Q-----------------QLLMNPIAI---KGRSARAIILSPTRELALQ-IHEA-FVSFG 200
Query: 261 ARLDSSMEN---GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
RL + + G K + D+S + +L+ATP + ++ + + D+ +++VLDEA
Sbjct: 201 KRLPLNFTHAIGGAPIRKQMRDLSKG-VDILVATPGRLEDLVDQKGLRLDETKFLVLDEA 259
Query: 318 DTLFDRGFGPEISKILNPL-KDSALKSNGQGFQTILVTAAIAE 359
D + D GF P + +I++ + KD QT+L +A +++
Sbjct: 260 DQMLDIGFLPAVKRIISKVNKDR---------QTLLFSATMSK 293
>gi|281209095|gb|EFA83270.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 1070
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 113/220 (51%), Gaps = 33/220 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ + L + KA+ + G VP+ IQ IP +L G VV + +GSG+T A+++P++Q
Sbjct: 259 FQSMELHKTLFKAIVRKGFKVPTPIQRKTIPLILAGSDVVAMARTGSGKTAAFVVPMIQK 318
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
EH ++ VG RAI+L T E A Q + + K ++ +
Sbjct: 319 LG----EHSIK-VG------------------ARAIILSPTRELAIQTYKVVKDFTYGSN 355
Query: 263 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GG S +++ P +++ATP ++ H+++ + ++Y+V DEAD LF
Sbjct: 356 LRSCLVVGGDSMEDQFAELARNP-DIIVATPGRLVHHLQEVGMGLSTVQYIVFDEADRLF 414
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+ GF +++ I++ L D+ QT+L +A + ML
Sbjct: 415 EMGFQQQLNDIVSKLSDNR--------QTLLFSATLPSML 446
>gi|262401641|ref|ZP_06078207.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
gi|262352058|gb|EEZ01188.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC586]
Length = 416
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 100/194 (51%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q + RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQY--------------LLDFPRR-------KPGPARILILTPTRELAMQVAEQAQALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL+ GGV + D+ +++ATP +L++I+ C I +++LDEAD
Sbjct: 100 KNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKI 332
+ D GFGP + ++
Sbjct: 160 RMLDMGFGPTVDRL 173
>gi|167580312|ref|ZP_02373186.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
gi|167618435|ref|ZP_02387066.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
gi|257139776|ref|ZP_05588038.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 481
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 34/260 (13%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE+++A+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC----- 371
AD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 170 ADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIE 221
Query: 372 LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 222 VARSNAAASTVTQIVYDVAE 241
>gi|350530261|ref|ZP_08909202.1| ATP-dependent RNA helicase SrmB [Vibrio rotiferianus DAT722]
Length = 407
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQIADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I ++VLDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|153839366|ref|ZP_01992033.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
gi|149747114|gb|EDM58102.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus AQ3810]
Length = 407
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I ++VLDEAD
Sbjct: 100 KKTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|399017820|ref|ZP_10720009.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398102587|gb|EJL92767.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 504
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 19/195 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ GL +++KA+ G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q+
Sbjct: 18 FEDFGLSPDILKALSAQGYIHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
+ ++ P + HP RA++L T E ADQ K S
Sbjct: 78 L----------------LAHASTSMSPAR--HPVRALILTPTRELADQVADNVKAYSRFT 119
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV + ++IATP +L H++ + V+ + +V+DEAD +
Sbjct: 120 PLRSTVVFGGVDMAPQTATLRGGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML 179
Query: 322 DRGFGPEISKILNPL 336
D GF P++ +I+N L
Sbjct: 180 DMGFLPDLQRIINLL 194
>gi|309781736|ref|ZP_07676469.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
gi|308919377|gb|EFP65041.1| ATP-dependent RNA helicase [Ralstonia sp. 5_7_47FAA]
Length = 498
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 22/213 (10%)
Query: 124 NIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVL 183
N A+ E S E V+ F GL ++++A+ + G P+ IQ IP V G V+
Sbjct: 2 NTATMSEASEAPANESVT-FDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMG 60
Query: 184 SSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCT 242
++ +G+G+T + LP++ H+L + + + P + HP RA++L
Sbjct: 61 AAQTGTGKTAGFSLPII---------HNL-------LPDANTSASPAR--HPVRALILTP 102
Query: 243 TEESADQGF-HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301
T E ADQ + ++AK+ + A L S++ GGV + + +L+ATP +L H++
Sbjct: 103 TRELADQVYDNVAKYAKYTA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQ 161
Query: 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
R+V+ +R +VLDEAD + D GF P++ +I+N
Sbjct: 162 RSVNLSQVRMLVLDEADRMLDMGFLPDLQRIIN 194
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 111/219 (50%), Gaps = 31/219 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + KAV K+G P+ IQ IP +LNGK ++ S+ +GSG+T A++LP+++
Sbjct: 235 TFEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILE 294
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
D H + R +++ T E A Q + + ++
Sbjct: 295 RLLYRDATHRVS----------------------RVLIVLPTRELALQCHSVFESLAQFT 332
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTL 320
+ S + GG+S+K E ++IATP ++ H+ + +V +DI +VLDEAD L
Sbjct: 333 NVQSCLVVGGLSNKVQEHELRKRPDVIIATPGRLIDHLLNAHDVGLEDIEILVLDEADRL 392
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF E+++++ D G QT+L +A +++
Sbjct: 393 LDMGFKDELNRVVESCPD--------GRQTLLFSATLSD 423
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 33/204 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KAV++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFH 252
Q LLP HP RA++L T E ADQ +
Sbjct: 71 Q------------------------RLLPQASTSASPARHPVRALILTPTRELADQVAAN 106
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H A L S++ GGV + + +LIATP +L H++ + + ++ +
Sbjct: 107 VQAYAKHTA-LRSAVVFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQIL 165
Query: 313 VLDEADTLFDRGFGPEISKILNPL 336
VLDEAD + D GF P++ +ILN L
Sbjct: 166 VLDEADRMLDMGFLPDLQRILNLL 189
>gi|167823349|ref|ZP_02454820.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei 9]
gi|226195327|ref|ZP_03790916.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|225932529|gb|EEH28527.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 478
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 126/266 (47%), Gaps = 46/266 (17%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 69 IIQ------------------------RLLPQANTSASPARHPVRALILTPTRELADQVA 104
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 105 ANVHAYAKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
+VLDEAD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 164 ILVLDEADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLR 215
Query: 371 C-----LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 216 NPQTIEVARSNAAASTVTQIVYDVAE 241
>gi|28198088|ref|NP_778402.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|182680716|ref|YP_001828876.1| DEAD/DEAH box helicase [Xylella fastidiosa M23]
gi|386084233|ref|YP_006000515.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417559570|ref|ZP_12210477.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
gi|28056148|gb|AAO28051.1| ATP-dependent RNA helicase [Xylella fastidiosa Temecula1]
gi|182630826|gb|ACB91602.1| DEAD/DEAH box helicase domain protein [Xylella fastidiosa M23]
gi|307579180|gb|ADN63149.1| ATP-dependent RNA helicase [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338177898|gb|EGO80936.1| Superfamily II DNA and RNA helicase [Xylella fastidiosa EB92.1]
Length = 446
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 28/234 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL +++A+ + G +P+ IQ IP L G ++ ++ +G+G+T A+ LP++Q
Sbjct: 2 NFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
VG + PRA+VL T E A Q + +
Sbjct: 62 RLMAASSN-----VGAGK---------------PRALVLTPTRELATQVHDSLRGYAKYQ 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S++ GGV DV + +LIA P ++ HIE R+V + +VLDEAD +
Sbjct: 102 RVSSAVIYGGVGMGNQLDVLRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRML 161
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
D GF P I +IL L Q QT+L +A AE + +QL+ C R+
Sbjct: 162 DMGFLPSIKRILGKLPR-------QNRQTLLFSATFAEPI-KQLALEFMCRPRE 207
>gi|386389052|ref|ZP_10073883.1| DEAD/DEAH box helicase [Haemophilus paraphrohaemolyticus HK411]
gi|385696213|gb|EIG26715.1| DEAD/DEAH box helicase [Haemophilus paraphrohaemolyticus HK411]
Length = 445
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++++F+E L +++KA+ + G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP
Sbjct: 7 ILTTFEEFDLSPQLLKALNEKGYKRPTSVQAQTIPHALDGRDLLGSAPTGTGKTAAFLLP 66
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 67 AIQ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEQAEALA 105
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L + GGV+ + ++ N+ +++ATP ++Q+I++ N C + ++ DEAD
Sbjct: 106 KFTKLSIATITGGVAYQNHGEIFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEAD 165
Query: 319 TLFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 166 RMLQMGFGQDAEKI 179
>gi|269959614|ref|ZP_06173995.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
gi|424047884|ref|ZP_17785440.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-03]
gi|269835672|gb|EEZ89750.1| Superfamily II DNA and RNA helicase [Vibrio harveyi 1DA3]
gi|408883194|gb|EKM21981.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-03]
Length = 407
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|241663607|ref|YP_002981967.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240865634|gb|ACS63295.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 493
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 108/195 (55%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V G+ V+ ++ +G+G+T + LP++
Sbjct: 14 TFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGRDVMGAAQTGTGKTAGFSLPII- 72
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 259
H+L + + + P + HP RA++L T E ADQ + ++AK+ +
Sbjct: 73 --------HNL-------LPDANTSASPAR--HPVRALILTPTRELADQVYDNVAKYAKY 115
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 116 TA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 174
Query: 320 LFDRGFGPEISKILN 334
+ D GF P++ +I+N
Sbjct: 175 MLDMGFLPDLQRIIN 189
>gi|167585532|ref|ZP_02377920.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 408
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQSQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EHH + RA++L T E A Q + S
Sbjct: 62 RLHTFYAEHHHAKRAV------------------RALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALRRGVDIVVATPGRLLDHMQQKTIDLSQLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|398803769|ref|ZP_10562787.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398096022|gb|EJL86353.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 481
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LP
Sbjct: 1 MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
L+Q M + + P + HP RA+VL T E A Q +
Sbjct: 61 LLQ----------------RMMKHENPSTSPAR--HPVRALVLLPTRELAVQVAQQVELY 102
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEA
Sbjct: 103 AKYTNLRSTVVFGGMDMKPQTAELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEA 162
Query: 318 DTLFDRGFGPEISKILNPL 336
D + D GF P++ +IL+ L
Sbjct: 163 DRMLDIGFLPDLQRILSYL 181
>gi|260771156|ref|ZP_05880083.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
gi|375130065|ref|YP_004992164.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
gi|260613753|gb|EEX38945.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii CIP 102972]
gi|315179238|gb|ADT86152.1| ATP-dependent RNA helicase SrmB [Vibrio furnissii NCTC 11218]
Length = 414
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 99/195 (50%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPNLLEAIEEMGFERPTQVQAEAIPHALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q P K P R ++L T E A Q A+ +
Sbjct: 61 ALQFLQDF----------------------PRKKAGPARILILTPTRELAMQITEQAREL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ +L+ GGV + D+ +++ATP +L++IE C I +++LDEA
Sbjct: 99 AKYTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIEAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPVVDRL 173
>gi|58580393|ref|YP_199409.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58424987|gb|AAW74024.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 484
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 26 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 85
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL G + P+ P PRA++L T E A Q + S
Sbjct: 86 ---------HL---GTSPQ--------PVNGPRKPRALILTPTRELATQVHDSLRGYSKY 125
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 126 LRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 185
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 186 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 217
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 33/202 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KAV++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFH 252
Q LLP HP RA++L T E ADQ +
Sbjct: 71 Q------------------------RLLPQASTSASPARHPVRALILTPTRELADQVAAN 106
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H A L S++ GGV + + +LIATP +L H++ + + ++ +
Sbjct: 107 VQSYAKHTA-LRSAVVFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQIL 165
Query: 313 VLDEADTLFDRGFGPEISKILN 334
VLDEAD + D GF P++ +ILN
Sbjct: 166 VLDEADRMLDMGFLPDLQRILN 187
>gi|384420778|ref|YP_005630138.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353463691|gb|AEQ97970.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 460
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL + P+ P PRA++L T E A Q + S
Sbjct: 62 ---------HL-----------GTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 102 LRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 161
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 162 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|254259821|ref|ZP_04950875.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254218510|gb|EET07894.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 126/266 (47%), Gaps = 46/266 (17%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 69 IIQ------------------------RLLPQANTSASPARHPVRALILTPTRELADQVA 104
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 105 ANVHAYAKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
+VLDEAD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 164 ILVLDEADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLR 215
Query: 371 C-----LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 216 NPQTIEVARSNAAASTVTQIVYDVAE 241
>gi|407693805|ref|YP_006818594.1| ATP-dependent RNA helicase SrmB [Actinobacillus suis H91-0380]
gi|407389862|gb|AFU20355.1| ATP-dependent RNA helicase SrmB [Actinobacillus suis H91-0380]
Length = 445
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ +
Sbjct: 69 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GGV+ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 108 KLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRML 167
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 168 QMGFGQDAEKI 178
>gi|409407327|ref|ZP_11255778.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386433078|gb|EIJ45904.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 487
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 19/195 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q
Sbjct: 18 FEDFGLSPDILKALSEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
L H + P + HP RA++L T E ADQ K S
Sbjct: 78 L--LAHASH--------------SASPAR--HPVRALILTPTRELADQVAENVKAYSRFT 119
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV A + ++IATP +L H++ + V+ + +V+DEAD +
Sbjct: 120 PLRSTVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML 179
Query: 322 DRGFGPEISKILNPL 336
D GF P++ +I+N L
Sbjct: 180 DMGFLPDLQRIINLL 194
>gi|71731568|gb|EAO33629.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Ann-1]
Length = 446
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 28/234 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL +++A+ + G +P+ IQ IP L G ++ ++ +G+G+T A+ LP++Q
Sbjct: 2 NFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
VG + PRA+VL T E A Q + +
Sbjct: 62 RLMAASSN-----VGAGK---------------PRALVLTPTRELATQVHDSLRGYAKYQ 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S++ GGV DV + +LIA P ++ HIE R+V + +VLDEAD +
Sbjct: 102 RVSSAVIYGGVGMGNQLDVLRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRML 161
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
D GF P I +IL L Q QT+L +A AE + +QL+ C R+
Sbjct: 162 DMGFLPSIKRILGKLPR-------QNRQTLLFSATFAEPI-KQLALEFMCRPRE 207
>gi|325915753|ref|ZP_08178055.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
35937]
gi|325538017|gb|EGD09711.1| DNA/RNA helicase, superfamily II [Xanthomonas vesicatoria ATCC
35937]
Length = 461
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 106/219 (48%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL G + P+ P PRA++L T E A Q + S
Sbjct: 62 ---------HL---GTSPQ--------PVNGPRKPRALILTPTRELATQVHDSLRGYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 102 LRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 161
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 162 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|307255928|ref|ZP_07537729.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307260381|ref|ZP_07542088.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306861196|gb|EFM93189.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865632|gb|EFM97513.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 445
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ +
Sbjct: 69 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GGV+ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 108 KLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRML 167
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 168 QMGFGQDAEKI 178
>gi|190151364|ref|YP_001969889.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|307264721|ref|ZP_07546300.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189916495|gb|ACE62747.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
7 str. AP76]
gi|306869917|gb|EFN01682.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 445
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ +
Sbjct: 69 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GGV+ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 108 KLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRML 167
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 168 QMGFGQDAEKI 178
>gi|416060551|ref|ZP_11580900.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|444333252|ref|ZP_21149116.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|347998277|gb|EGY39211.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|443551962|gb|ELT59590.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 443
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAIQ- 65
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q AK +++ +
Sbjct: 66 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELAYFTK 105
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 106 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQ 165
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 166 MGFGQDAEKI 175
>gi|356506148|ref|XP_003521849.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Glycine max]
Length = 778
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 34/223 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ LGL + K +++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P++
Sbjct: 20 FESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMLHR 79
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+Q H+ G+ RA++L T + A Q K + H
Sbjct: 80 LNQ-----HIPQSGV------------------RALILSPTRDLALQTLKFTKELGHFTD 116
Query: 263 LDSSMENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTL 320
L S+ GG S + E+++ +P ++IATP ++ H+ E ++S + YVV DEAD L
Sbjct: 117 LRVSLLVGGDSMEIQFEELAQSP-DIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCL 175
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
F GF ++ +IL L G+ QT+L +A + L E
Sbjct: 176 FGMGFAEQLHQILAQL--------GENRQTLLFSATLPSALAE 210
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 27/218 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL E+++A+++ G P+ IQ IP VL+G+ ++ ++ +G+G+T A++LP
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLP--- 58
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
I + L++ + MHP RA++L T E ADQ A +
Sbjct: 59 ---------------ILERLKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKY 103
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GG++ + +LIATP +L H+ + V + + +VLDEAD +
Sbjct: 104 LPLRSTVVFGGMNMDPQTQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRM 163
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
D GF +I KIL L + QT+L +A A
Sbjct: 164 LDMGFINDIRKILGMLPRTR--------QTLLFSATFA 193
>gi|307258113|ref|ZP_07539865.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306863476|gb|EFM95407.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 445
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ +
Sbjct: 69 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GGV+ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 108 KLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRML 167
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 168 QMGFGQDAEKI 178
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 110/218 (50%), Gaps = 27/218 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL E+++A+++ G P+ IQ IP VL+G+ ++ ++ +G+G+T A++LP
Sbjct: 2 SFAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLP--- 58
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
I + L++ + MHP RA++L T E ADQ A +
Sbjct: 59 ---------------ILERLKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKY 103
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GG++ + +LIATP +L H+ + V + + +VLDEAD +
Sbjct: 104 LPLRSTVVFGGMNMDPQTQELRRGVEILIATPGRLLDHVGQKTVQLNKVDVLVLDEADRM 163
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
D GF +I KIL L + QT+L +A A
Sbjct: 164 LDMGFINDIRKILGMLPRTR--------QTLLFSATFA 193
>gi|4104820|gb|AAD02177.1| RNA helicase [Anabaena variabilis]
Length = 425
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I AV ++G P+ IQ IPAVL+G+ ++ + +G+G+T ++ LPL+
Sbjct: 2 SFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLLH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
Y ++ +L+ + L + RA++L T E A Q +
Sbjct: 62 YYPKI-------------VLKALQCFLTI-----RALILTPTRELAAQVESSVRDYGKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L+S + GGVS + + +L+ATP +L H++ V+ I +VLDEAD +
Sbjct: 104 KLNSMVMFGGVSINPQKQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I +IL+ L
Sbjct: 164 DMGFIRDIRRILSLL 178
>gi|307246946|ref|ZP_07529011.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306852231|gb|EFM84471.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 449
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ +
Sbjct: 69 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GGV+ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 108 KLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRML 167
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 168 QMGFGQDAEKI 178
>gi|269964515|ref|ZP_06178755.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
gi|269830752|gb|EEZ84971.1| Superfamily II DNA and RNA helicase [Vibrio alginolyticus 40B]
Length = 403
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQIADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|167718732|ref|ZP_02401968.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
DM98]
Length = 409
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 129/260 (49%), Gaps = 34/260 (13%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC----- 371
AD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 170 ADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIE 221
Query: 372 LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 222 VARSNAAASTVTQIVYDVAE 241
>gi|188578674|ref|YP_001915603.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188523126|gb|ACD61071.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 460
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL + P+ P PRA++L T E A Q + S
Sbjct: 62 ---------HL-----------GTSPQPVNGPRKPRALILTPTRELATQVHDSLRGYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 102 LRIPSAVIYGGVGMGNQLDTLRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 161
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 162 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|167737747|ref|ZP_02410521.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
14]
Length = 409
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 129/260 (49%), Gaps = 34/260 (13%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC----- 371
AD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 170 ADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLRNPQAIE 221
Query: 372 LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 222 VARSNAAASTVTQIVYDVAE 241
>gi|167910130|ref|ZP_02497221.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
112]
Length = 400
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 126/266 (47%), Gaps = 46/266 (17%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 69 IIQ------------------------RLLPQANTSASPARHPVRALILTPTRELADQVA 104
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 105 ANVHAYAKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
+VLDEAD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 164 ILVLDEADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLR 215
Query: 371 C-----LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 216 NPQTIEVARSNAAASTVTQIVYDVAE 241
>gi|307262511|ref|ZP_07544156.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306867888|gb|EFM99719.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 449
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ +
Sbjct: 69 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GGV+ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 108 KLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRML 167
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 168 QMGFGQDAEKI 178
>gi|167918160|ref|ZP_02505251.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BCC215]
Length = 414
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 129/260 (49%), Gaps = 34/260 (13%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC----- 371
AD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 170 ADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIE 221
Query: 372 LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 222 VARSNAAASTVTQIVYDVAE 241
>gi|336125000|ref|YP_004567048.1| hypothetical protein VAA_00381 [Vibrio anguillarum 775]
gi|335342723|gb|AEH34006.1| hypothetical protein VAA_00381 [Vibrio anguillarum 775]
Length = 411
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 99/195 (50%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +I A+E MG P+++Q IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIKTFADLDLDPCIIAAIEDMGFERPTQVQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P K P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRKRAGPARVLILTPTRELAMQVADQAREL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP ++++IE C I +++LDEA
Sbjct: 99 AKNTRLNIVTITGGVQYQEHADILAKTQDIVVATPGRLMEYIEGERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPIVDRL 173
>gi|240950103|ref|ZP_04754398.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
gi|240295404|gb|EER46173.1| ATP-dependent RNA helicase SrmB [Actinobacillus minor NM305]
Length = 445
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP
Sbjct: 7 ILTFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPA 66
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 67 IQ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAE 105
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GGV+ + +V N +++ATP ++Q+I++ N C + ++ DEAD
Sbjct: 106 FTNLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADR 165
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 166 MLQMGFGQDAEKI 178
>gi|145632667|ref|ZP_01788401.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
gi|229846508|ref|ZP_04466616.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
gi|144986862|gb|EDJ93414.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 3655]
gi|229810601|gb|EEP46319.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 7P49H1]
Length = 439
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP P ++L T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPCILILTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|386334065|ref|YP_006030236.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334196515|gb|AEG69700.1| atp-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 599
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 22/261 (8%)
Query: 115 PQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA 174
PQ + +++ S+ S N S+F LGL +++A+ ++ P+ +Q IPA
Sbjct: 4 PQLDGGAIAHTESDTPNSDALNTSAASAFAALGLDERIVRALGEVNYTTPTPVQAQAIPA 63
Query: 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLR-RDEALLPMKP- 232
L+G+ ++++S +GSG+T A++LP +Q S+ E + G Q ++ R P KP
Sbjct: 64 CLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQRPRADGAPQRIKGRRPRPAPAKPS 123
Query: 233 ---MHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGML 288
+ P R + L T +A G H+ + + CA S+ G K L+ ++ P ++
Sbjct: 124 LLVLTPTRELALQVTTATAQYGRHLRRIV--CA----SILGGMPYPKQLDMLARMP-DII 176
Query: 289 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 348
IATP +L HI+ + + +V DEAD + D GF +I I+ +S
Sbjct: 177 IATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADDIEAIVGATPES--------- 227
Query: 349 QTILVTAAIAEMLGEQLSSLM 369
+ +L+ +A + EQL+ M
Sbjct: 228 RQMLMFSATMDRRIEQLAERM 248
>gi|307251282|ref|ZP_07533202.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306856680|gb|EFM88816.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 445
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ +
Sbjct: 69 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GGV+ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 108 KLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRML 167
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 168 QMGFGQDAEKI 178
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + GL +++A+ G P+ IQ IP +L G+ V+ ++ +G+G+T + LP++Q
Sbjct: 67 FADFGLSPHILRALTDQGYVHPTPIQAQAIPVLLQGRDVMGAAQTGTGKTAGFALPIIQ- 125
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
ML + HP RA++L T E A Q K +
Sbjct: 126 -----------------MLLAHASTSTSPARHPVRALILTPTRELAVQVAENVKAYAQHT 168
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GG+ K + A + ++IATP +L H+E +N+S ++ +V+DEAD +
Sbjct: 169 PLRSTVVFGGMDMKGQTVILKAGVEIVIATPGRLLDHVEQKNISLGQVQMLVMDEADRML 228
Query: 322 DRGFGPEISKILNPL 336
D GF P++ +I+N L
Sbjct: 229 DMGFLPDLQRIINLL 243
>gi|343514926|ref|ZP_08751991.1| ATP-dependent RNA helicase SrmB [Vibrio sp. N418]
gi|342799292|gb|EGU34867.1| ATP-dependent RNA helicase SrmB [Vibrio sp. N418]
Length = 419
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 99/194 (51%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P+++Q IP L G+ ++ S+ +G+G+T A+++P
Sbjct: 1 MIKNFADLDLDPNLLTAIEEMGFERPTQVQAQAIPQALEGRDILASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q + RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQF--------------LLDFPRR-------KPGPARMLILTPTRELAMQIADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP ++++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLMEYIKAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKI 332
+ D GFGP + K+
Sbjct: 160 RMLDMGFGPTVDKL 173
>gi|167814905|ref|ZP_02446585.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
91]
Length = 411
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 129/260 (49%), Gaps = 34/260 (13%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC----- 371
AD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 170 ADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIE 221
Query: 372 LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 222 VARSNAAASTVTQIVYDVAE 241
>gi|254229671|ref|ZP_04923081.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262395214|ref|YP_003287068.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
gi|151937792|gb|EDN56640.1| dead/deah box helicase domain protein [Vibrio sp. Ex25]
gi|262338808|gb|ACY52603.1| ATP-dependent RNA helicase SrmB [Vibrio sp. Ex25]
Length = 407
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYKRPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQIADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|223041595|ref|ZP_03611794.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
gi|223017570|gb|EEF15982.1| ATP-dependent RNA helicase [Actinobacillus minor 202]
Length = 443
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP
Sbjct: 7 ILTFEELDLSPQLLKALHKKGYKRPTSVQAQTIPYALDGRDLLGSAPTGTGKTAAFLLPA 66
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 67 IQ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEQAEELAE 105
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GGV+ + +V N +++ATP ++Q+I++ N C + ++ DEAD
Sbjct: 106 FTNLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADR 165
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 166 MLQMGFGQDAEKI 178
>gi|165977454|ref|YP_001653047.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165877555|gb|ABY70603.1| ATP-dependent RNA helicase protein [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 449
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ +
Sbjct: 69 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVSEEAQAFAEFT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GGV+ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 108 KLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRML 167
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 168 QMGFGQDAEKI 178
>gi|301613462|ref|XP_002936241.1| PREDICTED: probable ATP-dependent RNA helicase DDX31-like [Xenopus
(Silurana) tropicalis]
Length = 695
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 151/317 (47%), Gaps = 39/317 (12%)
Query: 52 SVKQINSSPVIRPLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKTNNPENK 111
SVK+ + P + PT +Q+R+ + P++ + + K+ K NP+ +
Sbjct: 41 SVKRKSQDASDEPSPKRPVPPT--SQKRLRNAPDEKPYKKQEVPAGKVLDGKKEENPKGR 98
Query: 112 PS-------PPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEK-MGLFV 163
P+ PE + A ++ K +A+ SF +LGL ++ + M +
Sbjct: 99 PAVKTSSLFKNNPEVPDIDRPAVKQLKEKVFSAD---SFSDLGLHPHLVSTINTVMNMTN 155
Query: 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRR 223
+ +Q IPA+L G+ V++ S +GSG+T+AY +PLVQ L G+T ++R
Sbjct: 156 TTSVQKQTIPALLAGRDVLVRSQTGSGKTMAYGVPLVQ-----------SLQGVTPKIQR 204
Query: 224 DEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKALEDVSN 282
+ P A+VL T E A Q F + K + + + GG K+ +
Sbjct: 205 SDG--------PYALVLVPTRELALQSFSTIQKLLKPFTWIVPGVLMGGEKRKSEKARLR 256
Query: 283 APIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSAL 341
I +LI+TP +L HI +++ R++V+DEAD + D GF +++ ILN AL
Sbjct: 257 KGINILISTPGRLLDHIRSTKSIHFTRARWLVVDEADRILDMGFEKDVTAILN-----AL 311
Query: 342 KSNGQGFQTILVTAAIA 358
S Q Q +L++A ++
Sbjct: 312 NSQCQHRQNVLLSATLS 328
>gi|260426960|ref|ZP_05780939.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
gi|260421452|gb|EEX14703.1| putative ATP-dependent RNA helicase RhlE [Citreicella sp. SE45]
Length = 473
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 126/275 (45%), Gaps = 42/275 (15%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAGAIPHALAGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ ++ + PR++VLC T E A Q +
Sbjct: 61 ITALARGRARARM----------------------PRSLVLCPTRELAAQVAENFDTYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K E + + + +LIATP +L H E + D++ +V+DEAD
Sbjct: 99 YVKLTKALLIGGVSFKEQEQLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADR 158
Query: 320 LFDRGFGPEISKI--LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 377
+ D GF P+I +I L P QT+ +A +A + ++ + ER
Sbjct: 159 MLDMGFIPDIERIFSLTPFTR----------QTLFFSATMAPEIERITNTFLSNPERVEV 208
Query: 378 GKVTAMLLEMDQAEVF--------DLTESQDALKK 404
+ ++Q VF + TE +D L++
Sbjct: 209 ARQATASETIEQGAVFFKGSRRDREATEKRDVLRQ 243
>gi|406979406|gb|EKE01199.1| hypothetical protein ACD_21C00193G0001 [uncultured bacterium]
Length = 368
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 40/239 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +L L ++++AV+ G P+ IQ IP++L+GK +V S+ +G+G+T AY+LP
Sbjct: 2 TFTQLQLHEKILQAVKACGYDKPTPIQVKAIPSILSGKDLVASAQTGTGKTAAYVLPC-- 59
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
LQL+G K PR ++L T E A Q + K I+
Sbjct: 60 ----------LQLLG------------AHKSSKPRVLILAPTRELAGQ---ITKVIAKYG 94
Query: 262 RL---DSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ + + GGVS + L+++S PI ++IATP ++ H+E+R + I ++LDEA
Sbjct: 95 KFMKPNIASFVGGVSYDRQLKELSR-PIDIVIATPGRLMDHMENRRLDLSRIEMLILDEA 153
Query: 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376
D + D GF P I +I +K+ + QT+L +A + L + L++ R N
Sbjct: 154 DRMLDMGFIPAIKRI--------VKATPKSRQTLLFSATADDKLMSVMKDLLKNPVRIN 204
>gi|68249023|ref|YP_248135.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
gi|68057222|gb|AAX87475.1| ATP-dependent RNA helicase SrmB [Haemophilus influenzae 86-028NP]
Length = 439
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F++ L E++KA+EK G P+ IQ IPA + + V+ S+ +G+G+T A+LLP
Sbjct: 3 LSQFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEERDVLGSAPTGTGKTAAFLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP P ++L T E A Q A+ ++
Sbjct: 63 LQ---------HL-----LDYPRR-------KPGPPCILILTPTRELAMQVAEQAEELAQ 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 102 FTHLNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 162 MLQMGFGQDAEKI 174
>gi|167844897|ref|ZP_02470405.1| putative ATP-dependent RNA helicase 2 [Burkholderia pseudomallei
B7210]
Length = 399
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 126/266 (47%), Gaps = 46/266 (17%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 69 IIQ------------------------RLLPQANTSASPARHPVRALILTPTRELADQVA 104
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 105 ANVHAYAKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
+VLDEAD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 164 ILVLDEADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLR 215
Query: 371 C-----LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 216 NPQTIEVARSNAAASTVTQIVYDVAE 241
>gi|345872285|ref|ZP_08824222.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
gi|343919163|gb|EGV29916.1| DEAD/DEAH box helicase domain protein [Thiorhodococcus drewsii AZ1]
Length = 446
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL AE+++AV+ G P+ IQ IPAVL G+ V+ + +G+G+T A+ LP+
Sbjct: 2 SFAELGLSAELLRAVDAQGYTHPTPIQLQAIPAVLLGRDVLAGAQTGTGKTAAFTLPM-- 59
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
LQL+ Q R PRA+VL T E A Q +
Sbjct: 60 ----------LQLLNAAQSNGRQR--------RPRALVLTPTRELAAQVGESVRLYGQNL 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S GGV D + +L+ATP +L H NV I +VLDEAD +
Sbjct: 102 PLRSLQIFGGVGMGPQVDKLRRGVDILVATPGRLLDHQGQGNVDLGGIEILVLDEADRML 161
Query: 322 DRGFGPEISKILNPL 336
D GF +I +IL L
Sbjct: 162 DMGFIHDIRRILKSL 176
>gi|451975526|ref|ZP_21926713.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
gi|451930509|gb|EMD78216.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
Length = 407
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQIADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|91226790|ref|ZP_01261443.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
gi|91188921|gb|EAS75205.1| ATP-dependent RNA helicase SrmB [Vibrio alginolyticus 12G01]
Length = 407
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQIADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLKEYIDAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|65306809|gb|AAY41942.1| vasa-like protein [Anopheles gambiae]
Length = 596
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 140/287 (48%), Gaps = 41/287 (14%)
Query: 104 KTNNPENKPSPPQP-EQQQL---SNIASE---------REKSSGSNA-EVVSSFQELGLK 149
KT+ P PP P E + L S I+S + + SG N + V SF+ GL+
Sbjct: 123 KTDKPRELYIPPLPTEDESLIFGSGISSGINFDKFEEIQVRVSGENPPDHVESFERSGLR 182
Query: 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEE 209
E++ V K P+ IQ IP +LNG+ ++ + +GSG+T A++LP++
Sbjct: 183 EEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMI--------- 233
Query: 210 HHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 269
HHL L ++++L ++ +P +++ T E A Q + +H +L +
Sbjct: 234 HHL--------LDKEDSL-ELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSY 284
Query: 270 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 329
GG + + + +L+ATP +L I+ V+ +++ +VVLDEAD + D GF P I
Sbjct: 285 GGTAVQHQLQLMRGGCHVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSI 344
Query: 330 SKILNPLKDSALKSNGQGFQTILVTAA----IAEMLGEQLSSLMECL 372
K++ A Q QT++ +A I E+ G+ L + + C+
Sbjct: 345 EKVMG----HATMPEKQQRQTLMFSATFPAEIQELAGKFLHNYI-CV 386
>gi|422921886|ref|ZP_16955091.1| ATP-dependent RNA helicase srmB [Vibrio cholerae BJG-01]
gi|341647503|gb|EGS71581.1| ATP-dependent RNA helicase srmB [Vibrio cholerae BJG-01]
Length = 423
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|417819516|ref|ZP_12466132.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE39]
gi|423947618|ref|ZP_17733577.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|423976888|ref|ZP_17737125.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
gi|340041078|gb|EGR02046.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE39]
gi|408661658|gb|EKL32642.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-40]
gi|408665986|gb|EKL36789.1| type III restriction enzyme, res subunit [Vibrio cholerae HE-46]
Length = 423
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|294929941|ref|XP_002779431.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239888539|gb|EER11226.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 863
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 23/192 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+FQ +GL + KA++KMG P+ IQ IP +L G VV + +GSG+T A+++P++Q
Sbjct: 24 AFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQ 83
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ H ++VG RA++L T E A Q + + +
Sbjct: 84 TL-----KGHSEVVG------------------ARAVILSPTRELAMQTIKVTRMLGKFT 120
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L + GG S ++ D ++ +LI TP ++ H+ + ++S ++Y+V DEAD LF
Sbjct: 121 DLRLCLIVGGHSMESQFDRLSSNPDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLF 180
Query: 322 DRGFGPEISKIL 333
+ GF ++ IL
Sbjct: 181 EMGFSDDMQTIL 192
>gi|118785473|ref|XP_314684.3| AGAP008578-PA [Anopheles gambiae str. PEST]
gi|116127754|gb|EAA10198.3| AGAP008578-PA [Anopheles gambiae str. PEST]
Length = 596
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 140/287 (48%), Gaps = 41/287 (14%)
Query: 104 KTNNPENKPSPPQP-EQQQL---SNIASE---------REKSSGSNA-EVVSSFQELGLK 149
KT+ P PP P E + L S I+S + + SG N + V SF+ GL+
Sbjct: 123 KTDKPRELYIPPLPTEDESLIFGSGISSGINFDKFEEIQVRVSGENPPDHVESFERSGLR 182
Query: 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEE 209
E++ V K P+ IQ IP +LNG+ ++ + +GSG+T A++LP++
Sbjct: 183 EEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSGKTAAFMLPMI--------- 233
Query: 210 HHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 269
HHL L ++++L ++ +P +++ T E A Q + +H +L +
Sbjct: 234 HHL--------LDKEDSL-ELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSY 284
Query: 270 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 329
GG + + + +L+ATP +L I+ V+ +++ +VVLDEAD + D GF P I
Sbjct: 285 GGTAVQHQLQLMRGGCHVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLDMGFLPSI 344
Query: 330 SKILNPLKDSALKSNGQGFQTILVTAA----IAEMLGEQLSSLMECL 372
K++ A Q QT++ +A I E+ G+ L + + C+
Sbjct: 345 EKVMG----HATMPEKQQRQTLMFSATFPAEIQELAGKFLHNYI-CV 386
>gi|121728399|ref|ZP_01681427.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
gi|147674594|ref|YP_001216154.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|153215838|ref|ZP_01950170.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
gi|153802013|ref|ZP_01956599.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
gi|153829171|ref|ZP_01981838.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
gi|227117035|ref|YP_002818931.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|229512921|ref|ZP_04402388.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
gi|229525313|ref|ZP_04414718.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
VL426]
gi|229530466|ref|ZP_04419854.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
gi|254226532|ref|ZP_04920115.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
gi|254291900|ref|ZP_04962682.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
gi|262169959|ref|ZP_06037649.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
gi|262191213|ref|ZP_06049412.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
gi|297580786|ref|ZP_06942712.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
gi|384423906|ref|YP_005633264.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3984-4]
gi|417823781|ref|ZP_12470373.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE48]
gi|419829280|ref|ZP_14352768.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|419832080|ref|ZP_14355545.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|419835580|ref|ZP_14359025.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-46B1]
gi|421342154|ref|ZP_15792561.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43B1]
gi|421350489|ref|ZP_15800855.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-25]
gi|421353468|ref|ZP_15803801.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-45]
gi|422916451|ref|ZP_16950789.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-02A1]
gi|423733943|ref|ZP_17707159.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|423817360|ref|ZP_17715391.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|423849398|ref|ZP_17719180.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|423879050|ref|ZP_17722785.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|423996872|ref|ZP_17740135.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-02C1]
gi|424008228|ref|ZP_17751178.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-44C1]
gi|424015575|ref|ZP_17755422.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-55B2]
gi|424020685|ref|ZP_17760465.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-59B1]
gi|424589905|ref|ZP_18029352.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1037(10)]
gi|424624056|ref|ZP_18062533.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-50A1]
gi|424628551|ref|ZP_18066856.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-51A1]
gi|424632587|ref|ZP_18070703.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-52A1]
gi|424635673|ref|ZP_18073694.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-55A1]
gi|424639587|ref|ZP_18077483.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A1]
gi|424647670|ref|ZP_18085346.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A1]
gi|429887891|ref|ZP_19369396.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae PS15]
gi|443528571|ref|ZP_21094605.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-78A1]
gi|121629333|gb|EAX61765.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V52]
gi|124114555|gb|EAY33375.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 1587]
gi|124122472|gb|EAY41215.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-3]
gi|125620936|gb|EAZ49287.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae V51]
gi|146316477|gb|ABQ21016.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|148875360|gb|EDL73495.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 623-39]
gi|150422186|gb|EDN14151.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae AM-19226]
gi|227012485|gb|ACP08695.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O395]
gi|229332239|gb|EEN97727.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 12129(1)]
gi|229338894|gb|EEO03911.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae bv. albensis
VL426]
gi|229350170|gb|EEO15123.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TMA 21]
gi|259156570|gb|ACV96513.1| ATP-dependent RNA helicase SrmB [Vibrio fluvialis Ind1]
gi|262021693|gb|EEY40404.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC27]
gi|262032915|gb|EEY51454.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae CT 5369-93]
gi|297535202|gb|EFH74037.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC385]
gi|327483459|gb|AEA77866.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae LMA3984-4]
gi|340048410|gb|EGR09332.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE48]
gi|341640084|gb|EGS64679.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-02A1]
gi|395945657|gb|EJH56322.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43B1]
gi|395954611|gb|EJH65221.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-25]
gi|395954815|gb|EJH65424.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-45]
gi|408015598|gb|EKG53178.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-50A1]
gi|408020789|gb|EKG58076.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-52A1]
gi|408026789|gb|EKG63784.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A1]
gi|408027224|gb|EKG64206.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-55A1]
gi|408036082|gb|EKG72529.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1037(10)]
gi|408036575|gb|EKG72999.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A1]
gi|408058594|gb|EKG93384.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-51A1]
gi|408621914|gb|EKK94906.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-1A2]
gi|408631713|gb|EKL04241.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-41B1]
gi|408636583|gb|EKL08720.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55C2]
gi|408643758|gb|EKL15475.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-60A1]
gi|408644797|gb|EKL16471.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-59A1]
gi|408651981|gb|EKL23220.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-61A2]
gi|408854250|gb|EKL94014.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-02C1]
gi|408858993|gb|EKL98663.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-46B1]
gi|408861797|gb|EKM01364.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-55B2]
gi|408866098|gb|EKM05487.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-44C1]
gi|408866550|gb|EKM05930.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-59B1]
gi|429225059|gb|EKY31345.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae PS15]
gi|443453145|gb|ELT16978.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-78A1]
Length = 423
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|15640680|ref|NP_230309.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587852|ref|ZP_01677609.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
gi|153818685|ref|ZP_01971352.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
gi|153822294|ref|ZP_01974961.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|227080841|ref|YP_002809392.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
gi|229505718|ref|ZP_04395228.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
gi|229508708|ref|ZP_04398201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|229519543|ref|ZP_04408986.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
gi|229608737|ref|YP_002879385.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
gi|254850991|ref|ZP_05240341.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
gi|255743880|ref|ZP_05417836.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
gi|262156099|ref|ZP_06029218.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
gi|298500776|ref|ZP_07010579.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
gi|360034568|ref|YP_004936331.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740519|ref|YP_005332488.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae IEC224]
gi|417812707|ref|ZP_12459366.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-49A2]
gi|417815574|ref|ZP_12462207.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HCUF01]
gi|418331709|ref|ZP_12942650.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-06A1]
gi|418336129|ref|ZP_12945030.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-23A1]
gi|418342965|ref|ZP_12949760.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-28A1]
gi|418348133|ref|ZP_12952868.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43A1]
gi|418354556|ref|ZP_12957278.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-61A1]
gi|419825128|ref|ZP_14348634.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|421315721|ref|ZP_15766293.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1032(5)]
gi|421319517|ref|ZP_15770076.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1038(11)]
gi|421323566|ref|ZP_15774094.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1041(14)]
gi|421327962|ref|ZP_15778477.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1042(15)]
gi|421330887|ref|ZP_15781369.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1046(19)]
gi|421334554|ref|ZP_15785022.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1048(21)]
gi|421338449|ref|ZP_15788885.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-20A2]
gi|421345563|ref|ZP_15795949.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-46A1]
gi|422890766|ref|ZP_16933178.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-40A1]
gi|422901644|ref|ZP_16937007.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48A1]
gi|422905868|ref|ZP_16940713.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-70A1]
gi|422912462|ref|ZP_16946988.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HFU-02]
gi|422924947|ref|ZP_16957977.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-38A1]
gi|423144265|ref|ZP_17131879.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-19A1]
gi|423148917|ref|ZP_17136276.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-21A1]
gi|423152762|ref|ZP_17139960.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-22A1]
gi|423155567|ref|ZP_17142680.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-32A1]
gi|423159405|ref|ZP_17146377.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-33A2]
gi|423164088|ref|ZP_17150875.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48B2]
gi|423730221|ref|ZP_17703539.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|423748411|ref|ZP_17711549.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|423891940|ref|ZP_17725627.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|423926714|ref|ZP_17730242.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|424001272|ref|ZP_17744361.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-17A2]
gi|424005426|ref|ZP_17748410.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-37A1]
gi|424023435|ref|ZP_17763099.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-62B1]
gi|424026240|ref|ZP_17765856.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-69A1]
gi|424585565|ref|ZP_18025159.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1030(3)]
gi|424594260|ref|ZP_18033598.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1040(13)]
gi|424598125|ref|ZP_18037323.1| ATP-dependent RNA helicase srmB [Vibrio Cholerae CP1044(17)]
gi|424600881|ref|ZP_18040038.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1047(20)]
gi|424605857|ref|ZP_18044822.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1050(23)]
gi|424609692|ref|ZP_18048550.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-39A1]
gi|424612495|ref|ZP_18051302.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-41A1]
gi|424616317|ref|ZP_18055008.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-42A1]
gi|424621251|ref|ZP_18059779.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-47A1]
gi|424644230|ref|ZP_18081984.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A2]
gi|424651873|ref|ZP_18089397.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A2]
gi|424655822|ref|ZP_18093124.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A2]
gi|440708953|ref|ZP_20889613.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 4260B]
gi|443502767|ref|ZP_21069756.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-64A1]
gi|443506681|ref|ZP_21073471.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-65A1]
gi|443510787|ref|ZP_21077451.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-67A1]
gi|443514349|ref|ZP_21080888.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-68A1]
gi|443518163|ref|ZP_21084580.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-71A1]
gi|443523029|ref|ZP_21089269.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-72A2]
gi|443530660|ref|ZP_21096676.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-7A1]
gi|443534420|ref|ZP_21100332.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-80A1]
gi|443538009|ref|ZP_21103865.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A1]
gi|449054023|ref|ZP_21732691.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str. Inaba
G4222]
gi|9655098|gb|AAF93826.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121547888|gb|EAX57972.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 2740-80]
gi|126510765|gb|EAZ73359.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae NCTC 8457]
gi|126520190|gb|EAZ77413.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|227008729|gb|ACP04941.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae M66-2]
gi|229344232|gb|EEO09207.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae RC9]
gi|229354232|gb|EEO19162.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae B33]
gi|229357941|gb|EEO22858.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae BX 330286]
gi|229371392|gb|ACQ61815.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MJ-1236]
gi|254846696|gb|EET25110.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MO10]
gi|255738511|gb|EET93900.1| ATP-dependent RNA helicase SrmB [Vibrio cholera CIRS 101]
gi|262030135|gb|EEY48780.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae INDRE 91/1]
gi|297540557|gb|EFH76615.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MAK 757]
gi|340042874|gb|EGR03837.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HCUF01]
gi|340043168|gb|EGR04128.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-49A2]
gi|341624967|gb|EGS50440.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-70A1]
gi|341626139|gb|EGS51545.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48A1]
gi|341626754|gb|EGS52112.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-40A1]
gi|341640638|gb|EGS65219.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HFU-02]
gi|341648304|gb|EGS72368.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-38A1]
gi|356420432|gb|EHH73958.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-06A1]
gi|356421145|gb|EHH74650.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-21A1]
gi|356425968|gb|EHH79307.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-19A1]
gi|356433652|gb|EHH86839.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-23A1]
gi|356434162|gb|EHH87344.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-22A1]
gi|356437692|gb|EHH90778.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-28A1]
gi|356442736|gb|EHH95571.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-32A1]
gi|356447711|gb|EHI00499.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-43A1]
gi|356449961|gb|EHI02697.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-33A2]
gi|356453810|gb|EHI06470.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-61A1]
gi|356456225|gb|EHI08834.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-48B2]
gi|356645722|gb|AET25777.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str.
2010EL-1786]
gi|378794029|gb|AFC57500.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae IEC224]
gi|395922462|gb|EJH33278.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1032(5)]
gi|395922781|gb|EJH33596.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1041(14)]
gi|395925842|gb|EJH36639.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1038(11)]
gi|395930547|gb|EJH41294.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1042(15)]
gi|395934740|gb|EJH45478.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1046(19)]
gi|395937347|gb|EJH48066.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1048(21)]
gi|395944885|gb|EJH55557.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-20A2]
gi|395948508|gb|EJH59153.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-46A1]
gi|395962360|gb|EJH72659.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-56A2]
gi|395963553|gb|EJH73816.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-57A2]
gi|395966375|gb|EJH76500.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-42A1]
gi|395974547|gb|EJH84072.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-47A1]
gi|395977411|gb|EJH86821.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1030(3)]
gi|395979101|gb|EJH88465.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1047(20)]
gi|408009418|gb|EKG47324.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-39A1]
gi|408016191|gb|EKG53745.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-41A1]
gi|408036855|gb|EKG73271.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1040(13)]
gi|408044566|gb|EKG80472.1| ATP-dependent RNA helicase srmB [Vibrio Cholerae CP1044(17)]
gi|408046274|gb|EKG81974.1| ATP-dependent RNA helicase srmB [Vibrio cholerae CP1050(23)]
gi|408056861|gb|EKG91732.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A2]
gi|408611399|gb|EKK84760.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1033(6)]
gi|408627074|gb|EKK99899.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-17A1]
gi|408640810|gb|EKL12594.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A2]
gi|408658100|gb|EKL29172.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-77A1]
gi|408659130|gb|EKL30185.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-62A1]
gi|408848148|gb|EKL88201.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-37A1]
gi|408849091|gb|EKL89124.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-17A2]
gi|408873251|gb|EKM12453.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-62B1]
gi|408881153|gb|EKM20063.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HC-69A1]
gi|439975694|gb|ELP51806.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae 4260B]
gi|443432887|gb|ELS75408.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-64A1]
gi|443436712|gb|ELS82829.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-65A1]
gi|443440274|gb|ELS89963.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-67A1]
gi|443444369|gb|ELS97643.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-68A1]
gi|443448205|gb|ELT04840.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-71A1]
gi|443450979|gb|ELT11243.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-72A2]
gi|443458861|gb|ELT26256.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-7A1]
gi|443462424|gb|ELT33463.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-80A1]
gi|443466442|gb|ELT41100.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HC-81A1]
gi|448266494|gb|EMB03721.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae O1 str. Inaba
G4222]
Length = 423
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|385203300|ref|ZP_10030170.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385183191|gb|EIF32465.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 491
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 33/202 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+F + GL +++KAV++ G +P+ IQ IP VL G+ ++ ++ +G+G+T ++ LP++
Sbjct: 11 STFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPII 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFH 252
Q LLP HP RA++L T E ADQ +
Sbjct: 71 Q------------------------RLLPQASTSASPARHPVRALILTPTRELADQVAAN 106
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H A L S++ GGV + + +LIATP +L H++ + + ++ +
Sbjct: 107 VQAYAKHTA-LRSAVVFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQIL 165
Query: 313 VLDEADTLFDRGFGPEISKILN 334
VLDEAD + D GF P++ +ILN
Sbjct: 166 VLDEADRMLDMGFLPDLQRILN 187
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 34/260 (13%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE+++A+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 99 VDATFDQFGLAAEILRAIAEQGYTTPTPIQANAIPVVLSGRDVMGAAQTGTGKTASFSLP 158
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 159 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 200
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 201 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 259
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC----- 371
AD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 260 ADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLRNPQTIE 311
Query: 372 LERDNAGKVTAMLLEMDQAE 391
+ R NA T + D AE
Sbjct: 312 VARSNAAASTVTQIVYDVAE 331
>gi|422909174|ref|ZP_16943826.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-09]
gi|424658529|ref|ZP_18095786.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-16]
gi|341635764|gb|EGS60470.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-09]
gi|408055013|gb|EKG89967.1| ATP-dependent RNA helicase srmB [Vibrio cholerae HE-16]
Length = 423
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|303251782|ref|ZP_07337953.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307249083|ref|ZP_07531090.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649212|gb|EFL79397.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306854371|gb|EFM86567.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 445
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTAVQAETIPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ +
Sbjct: 69 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GG++ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 108 KLSIATITGGIAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRML 167
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 168 QMGFGQDAEKI 178
>gi|325284979|ref|YP_004260769.1| DEAD/DEAH box helicase [Cellulophaga lytica DSM 7489]
gi|324320433|gb|ADY27898.1| DEAD/DEAH box helicase domain protein [Cellulophaga lytica DSM
7489]
Length = 429
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 25/194 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL ++KA++K G PS IQ IP VL GK V+ S+ +G+G+T + LPL+
Sbjct: 2 TFKNLGLSNNLLKAIDKKGYTTPSPIQEKAIPPVLEGKDVLASAQTGTGKTAGFTLPLLH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S+ H +P+ RA++L T E A Q F K S
Sbjct: 62 LLSEQKALRH-------------------RPV--RALILTPTRELAAQIFANVKEYSEFL 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGM--LIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S++ GGV+ K ++N GM L+ATP +L R +S D + VLDEAD
Sbjct: 101 DLRSAVIFGGVNQKP--QIANLKRGMDVLVATPGRLLDLHNQRFLSLDKVEIFVLDEADR 158
Query: 320 LFDRGFGPEISKIL 333
+ D GF +I +++
Sbjct: 159 MLDMGFLRDIERVM 172
>gi|229520951|ref|ZP_04410373.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
gi|229342184|gb|EEO07180.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae TM 11079-80]
Length = 423
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|91782534|ref|YP_557740.1| ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400]
gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
LB400]
Length = 491
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 33/202 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+F + GL +++KAV++ G +P+ IQ IP VL G+ ++ ++ +G+G+T ++ LP++
Sbjct: 11 STFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPII 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFH 252
Q LLP HP RA++L T E ADQ +
Sbjct: 71 Q------------------------RLLPQASTSASPARHPVRALILTPTRELADQVAAN 106
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H A L S++ GGV + + +LIATP +L H++ + + ++ +
Sbjct: 107 VQAYAKHTA-LRSAVVFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQIL 165
Query: 313 VLDEADTLFDRGFGPEISKILN 334
VLDEAD + D GF P++ +ILN
Sbjct: 166 VLDEADRMLDMGFLPDLQRILN 187
>gi|441503681|ref|ZP_20985683.1| ATP-dependent RNA helicase SrmB [Photobacterium sp. AK15]
gi|441428757|gb|ELR66217.1| ATP-dependent RNA helicase SrmB [Photobacterium sp. AK15]
Length = 411
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F EL L +E+++A+E +G P+ IQ IP L+G+ V+ S+ +G+G+T A+LLP+
Sbjct: 1 MRDFSELELDSELLQAIETIGYARPTVIQAQAIPHALDGRDVLASAPTGTGKTAAFLLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HLQ R+ KP R +VL T E A Q A+ +S
Sbjct: 61 IQ---------HLQ-----DFPRK-------KPGPARVLVLTPTRELAIQVADQARELSQ 99
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L GG+S ++ +++ATP ++++IE C I ++LDEAD
Sbjct: 100 FTNLKVFTITGGISYDEHAELLGKTQDIVVATPGRLMEYIEAERFDCRAIECLILDEADR 159
Query: 320 LFDRGFGPEISKI 332
+ D GFG + KI
Sbjct: 160 MLDMGFGKAVEKI 172
>gi|32035479|ref|ZP_00135436.1| COG0513: Superfamily II DNA and RNA helicases [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126209462|ref|YP_001054687.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|303250442|ref|ZP_07336639.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307251483|ref|ZP_07533390.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|126098254|gb|ABN75082.1| ATP-dependent RNA helicase [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|302650430|gb|EFL80589.1| ATP-dependent RNA helicase SrmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860947|gb|EFM92953.1| ATP-dependent RNA helicase srmB [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 445
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 100/191 (52%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ K G P+ +Q +P L+G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 9 TFEELDLAPQLLKALNKKGYKRPTSVQAETVPHALDGRDLLGSAPTGTGKTAAFLLPAIQ 68
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ +
Sbjct: 69 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEEAQAFAEFT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GGV+ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 108 KLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADRML 167
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 168 QMGFGQDAEKI 178
>gi|167835963|ref|ZP_02462846.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis MSMB43]
Length = 397
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 128/266 (48%), Gaps = 46/266 (17%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ + G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 69 IIQ------------------------RLLPQANTSASPARHPVRALILTPTRELADQVA 104
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 105 ANVHAYAKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM- 369
+VLDEAD + D GF P++ +ILN L QT+L +A + + + S+ +
Sbjct: 164 ILVLDEADRMLDMGFLPDLQRILNLLPKER--------QTLLFSATFSPEIKKLASTYLR 215
Query: 370 --ECLE--RDNAGKVTAMLLEMDQAE 391
+ +E R NA T + D AE
Sbjct: 216 DPQTIEVARSNAAASTVTQIVYDVAE 241
>gi|134296873|ref|YP_001120608.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|387903185|ref|YP_006333524.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
gi|134140030|gb|ABO55773.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
gi|387578077|gb|AFJ86793.1| ATP-dependent RNA helicase RhlE [Burkholderia sp. KJ006]
Length = 486
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTFYTEHR----GAKRAVR--------------ALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|223939310|ref|ZP_03631190.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223892023|gb|EEF58504.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 412
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 25/193 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL M+ V+ MG P+ IQ IP +L+G+ V+ S+ +G+G+T A+ LP++
Sbjct: 2 AFSNLGLSQTMVDGVKAMGYVEPTPIQLRAIPLILSGQDVIGSAQTGTGKTAAFALPIL- 60
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S+L E H + PR ++L T E A Q + +
Sbjct: 61 --SKL-ESHQPR---------------------PRLLILEPTRELAAQVETAIRDFARFT 96
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L +++ GGV D A + ++IATP +L H+E D I+Y+VLDEAD +
Sbjct: 97 NLRAAVLYGGVGYGRQMDALKAGVDIIIATPGRLLDHLERGTCKFDQIKYLVLDEADRML 156
Query: 322 DRGFGPEISKILN 334
D GF P++ +I++
Sbjct: 157 DMGFLPDVRRIVD 169
>gi|254363222|ref|ZP_04979270.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
gi|452744146|ref|ZP_21943995.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
gi|452745636|ref|ZP_21945469.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
gi|153095119|gb|EDN75666.1| ATP-dependent RNA helicase [Mannheimia haemolytica PHL213]
gi|452086238|gb|EME02628.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
gi|452087771|gb|EME04145.1| ATP-dependent RNA helicase SrmB [Mannheimia haemolytica serotype 6
str. H23]
Length = 444
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L +++KA+ G P+ IQ IPA L G+ ++ S+ +G+G+T A+LLP +Q
Sbjct: 6 TFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRDLLGSAPTGTGKTAAFLLPAIQ 65
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ ++
Sbjct: 66 ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEQAQALAKFT 104
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L + GGV+ + +V N +++ATP ++Q+I++ N C + ++ DEAD +
Sbjct: 105 QLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEADRML 164
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 165 QMGFGQDAEKI 175
>gi|348685911|gb|EGZ25726.1| hypothetical protein PHYSODRAFT_486355 [Phytophthora sojae]
Length = 852
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 39/235 (16%)
Query: 131 KSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSG 190
KSSG A V FQ LGL + + V MG VP+ IQ +P VL+GK V + +GSG
Sbjct: 27 KSSGKGAGV-GGFQHLGLSPPVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSG 85
Query: 191 RTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 250
+T A+L+P+++ +L E H +G+ RA+VL T E A Q
Sbjct: 86 KTAAFLIPMLE---KLKE--HSTKIGV------------------RAVVLSPTRELAVQT 122
Query: 251 FHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIE---DRNVSC 306
AK +S L ++ GG + E ++ P +L+ATP ++ H++ D N+
Sbjct: 123 LRFAKQLSKFTSLKMALIVGGEGMDQQFEAIAANP-DVLVATPGRLMHHLQEIPDFNLKA 181
Query: 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+ YVV DEAD +F+ GF ++ +IL + S QT+L +A + + L
Sbjct: 182 --VEYVVFDEADRIFEMGFAEQLQEILKNMPTSR--------QTLLFSATLPKAL 226
>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
Length = 493
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 104/196 (53%), Gaps = 19/196 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++++ + G VP+ IQ IP V+ G+ V+ ++ +G+G+T A+ +P++
Sbjct: 18 TFADFGLHPLLLQSIAETGYTVPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTVPIL- 76
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
H L M + + P + HP RA++L T E ADQ F K S
Sbjct: 77 --------HRL-------MPLANASASPAR--HPVRALILTPTRELADQVFESVKRYSKQ 119
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GGV ++ +L+ATP +L H+E +NV+ + +VLDEAD +
Sbjct: 120 TPLRSAVVFGGVDIGPQKEALRRGCEILVATPGRLLDHVEQKNVNLSQVGILVLDEADRM 179
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +I+ L
Sbjct: 180 LDMGFLPDLERIIRLL 195
>gi|161510959|ref|YP_089142.2| ATP-dependent RNA helicase SrmB [Mannheimia succiniciproducens
MBEL55E]
Length = 445
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ L E++KA+ + G P+ IQ IPA ++ + V+ S+ +G+G+T A+LLP +Q
Sbjct: 6 FEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQ- 64
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q A+ ++ +
Sbjct: 65 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAQQAEELAQFTK 104
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 105 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQ 164
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 165 MGFGQDAEKI 174
>gi|422306154|ref|ZP_16393339.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
gi|408627218|gb|EKL00035.1| type III restriction enzyme, res subunit [Vibrio cholerae
CP1035(8)]
Length = 423
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|109899589|ref|YP_662844.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas atlantica T6c]
gi|109701870|gb|ABG41790.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
T6c]
Length = 412
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++L L E+ +AV +G P+ IQ + IPA + GK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
H P R ++L T E A Q ++ A +S
Sbjct: 62 LLDYPRRH---------------------PGSTRILILTPTRELAQQVYNQALELSRYTD 100
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ + GG++ D + +L+ATP + +HIE + C DI ++LDEAD + D
Sbjct: 101 IVCGVITGGINYGTDRDTFEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLD 160
Query: 323 RGFGPEISKI 332
GF +++I
Sbjct: 161 MGFSSIVNQI 170
>gi|410621605|ref|ZP_11332451.1| ATP-dependent RNA helicase SrmB [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158843|dbj|GAC27825.1| ATP-dependent RNA helicase SrmB [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 421
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +L L E+ +A+ MG P+ IQ + IP + GK ++ + +G+G+T A+LLP+ Q
Sbjct: 2 FDQLDLDDELCRAINDMGYERPTSIQSLVIPHAMEGKDILADAPTGTGKTAAFLLPVCQY 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
LD R+D++ R ++L T E A+Q F AK I+
Sbjct: 62 L--LDHP------------RKDDS-------STRVLILVPTRELANQVFEQAKAITKYTH 100
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ + +L+ATP + +HIE + C DI ++LDEAD + D
Sbjct: 101 LTCGVITGGINYGTDRETLAGHCDILVATPGRLFEHIEQESFDCRDIESLILDEADRMLD 160
Query: 323 RGFGPEISKI 332
GF + +I
Sbjct: 161 MGFSSIVHQI 170
>gi|251793531|ref|YP_003008260.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
NJ8700]
gi|247534927|gb|ACS98173.1| ATP-dependent RNA helicase SrmB [Aggregatibacter aphrophilus
NJ8700]
Length = 441
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F + L E++KA++K G P+ IQ +PA ++G+ V+ S+ +G+G+T A+LLP
Sbjct: 4 LTQFADFDLAPELLKAIQKKGYQRPTAIQQETLPAAMDGEDVLGSAPTGTGKTAAFLLPA 63
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 64 IQ---------HL-----LDYPRR-------KPGAPRVLILTPTRELAMQVAEQAEELAC 102
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 103 FTKLSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADR 162
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 163 MLQMGFGQDAEKI 175
>gi|343509731|ref|ZP_08746993.1| ATP-dependent RNA helicase SrmB [Vibrio scophthalmi LMG 19158]
gi|342803528|gb|EGU38878.1| ATP-dependent RNA helicase SrmB [Vibrio scophthalmi LMG 19158]
Length = 412
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 99/194 (51%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P+++Q IP L G+ ++ S+ +G+G+T A+++P
Sbjct: 1 MIKNFADLDLDPNLLTAIEEMGFERPTQVQAQAIPQALEGRDILASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q + RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQF--------------LLDFPRR-------KPGPARMLILTPTRELAMQIADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP ++++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLMEYIKAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKI 332
+ D GFGP + K+
Sbjct: 160 RMLDMGFGPTVDKL 173
>gi|325185186|emb|CCA19676.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 494
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 19/234 (8%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+F++ L A + KA+ + G+ P+ IQ I AVL+G +++ + +G+G+TL+Y++P++
Sbjct: 37 STFEQYSLHANLCKALHESGIHKPTSIQRKSINAVLSGHNILCLAQTGTGKTLSYMIPII 96
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM--HPRAIVLCTTEESADQGFHMAKFIS 258
+ + + + LR +A P+ PR ++ + E A Q +AK ++
Sbjct: 97 EKIKRSE----------SAKLRETQA----APLISRPRVLIAVPSRELALQLGSVAKQLA 142
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H + S + G K + PI +LI TP ++ I+ ++ I ++LDEAD
Sbjct: 143 HHVKFASCVVTNGEHKKVQQQKLARPIDILIGTPGRIVTCIKKQDFYLSQIDTLILDEAD 202
Query: 319 TLFDR--GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
TLFD GF ++ IL P++ S K + Q+ILV A + +G + + E
Sbjct: 203 TLFDAKMGFIDDLKAILAPIQASCHKRECK-LQSILVAATATKSVGRVWNRMFE 255
>gi|332529740|ref|ZP_08405694.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
19624]
gi|332040761|gb|EGI77133.1| DEAD/DEAH box helicase-like protein [Hylemonella gracilis ATCC
19624]
Length = 506
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
+ +L L + +AV MG + IQ IP VL G+ V+ ++ +G+G+T A+ LPL+Q
Sbjct: 20 YADLTLAEPLKRAVADMGYETMTPIQAQAIPVVLAGQDVMGAAQTGTGKTAAFSLPLLQ- 78
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
++L+ + A P + HP RA+VL T E ADQ K +
Sbjct: 79 ----------------RLLKHENASTSPAR--HPVRALVLLPTRELADQVAQQVKMYAKY 120
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEAD +
Sbjct: 121 THLRSAVVFGGMDMKPQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRM 180
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +IL+ L
Sbjct: 181 LDIGFLPDLQRILSHL 196
>gi|163803377|ref|ZP_02197253.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
gi|159172839|gb|EDP57681.1| ATP-dependent RNA helicase SrmB [Vibrio sp. AND4]
Length = 407
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+E+MG P+ +Q IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIEQMGYERPTNVQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQVADQARAMA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|319788058|ref|YP_004147533.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
gi|317466570|gb|ADV28302.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 463
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 102/218 (46%), Gaps = 25/218 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQQQAIPLALAGHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
Q VG P PRA+VL T E A Q + S
Sbjct: 62 YLGT-----EPQKVG-------------PGPRKPRALVLTPTRELATQVHDSLRGYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S++ GGV D + M+IA P ++ HIE R++ I ++LDEAD +
Sbjct: 104 RIPSAVIYGGVGMGNQLDSLRRGVDMVIACPGRLIDHIERRSIDLSGIEVLILDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 164 DMGFLPSIKRILAKLPK-------QNRQTLLFSATFPE 194
>gi|432116565|gb|ELK37358.1| Putative ATP-dependent RNA helicase DDX31 [Myotis davidii]
Length = 714
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 127/257 (49%), Gaps = 39/257 (15%)
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEK-MGLFVP 164
NNPE P P+PE +Q+ +EK S+A F EL L +I + + +F
Sbjct: 80 NNPE-IPELPRPEVKQV------QEKVFSSDA-----FHELDLHPHLISTLNTVLNIFHM 127
Query: 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRD 224
+ +Q IPA+L G+ ++ S +GSG+TLAY +P+VQ + T++ R D
Sbjct: 128 TSVQKQRIPALLQGRDALVRSQTGSGKTLAYCIPVVQSLQAMK----------TKIQRGD 177
Query: 225 EALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKALEDVSNA 283
P A+VL T E A Q F K + + + GG K+ +
Sbjct: 178 G---------PYALVLVPTRELALQSFDTFQKLLKPFTWIVPGVLMGGEKRKSEKARLRK 228
Query: 284 PIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALK 342
I +LI+TP ++ HI+ +N+ + IR++VLDEAD + D GF I+ ILN A+
Sbjct: 229 GINILISTPGRLVDHIKSTKNIHFNRIRWLVLDEADRILDLGFEKTITVILN-----AIN 283
Query: 343 SNGQGFQTILVTAAIAE 359
+ Q Q +L++A + E
Sbjct: 284 AECQERQNVLLSATLTE 300
>gi|343508547|ref|ZP_08745883.1| ATP-dependent RNA helicase SrmB [Vibrio ichthyoenteri ATCC 700023]
gi|342793255|gb|EGU29059.1| ATP-dependent RNA helicase SrmB [Vibrio ichthyoenteri ATCC 700023]
Length = 412
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 101/194 (52%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P+++Q IP L G+ ++ S+ +G+G+T A+++P
Sbjct: 1 MIKNFADLDLDPNLLTAIEEMGFERPTQVQAQTIPQALEGRDILASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARMLILTPTRELAMQIADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP ++++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLMEYIKAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKI 332
+ D GFGP + K+
Sbjct: 160 RMLDMGFGPTVDKL 173
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 19/195 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ GL ++++A+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q+
Sbjct: 18 FEDFGLSPDILRALTEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQL 77
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
+ + P + HP RA++L T E ADQ K S
Sbjct: 78 L----------------LAHASTSASPAR--HPVRALILTPTRELADQVADNVKAYSRFT 119
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV A + ++IATP +L H++ + V+ + +V+DEAD +
Sbjct: 120 PLRSTVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML 179
Query: 322 DRGFGPEISKILNPL 336
D GF P++ +I+N L
Sbjct: 180 DMGFLPDLQRIINLL 194
>gi|385799993|ref|YP_005836397.1| DEAD/DEAH box helicase [Halanaerobium praevalens DSM 2228]
gi|309389357|gb|ADO77237.1| DEAD/DEAH box helicase domain protein [Halanaerobium praevalens DSM
2228]
Length = 529
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 34/216 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F EL + E++KAVE+MG + IQ IPAVLNG+ +V + +G+G+T A+ +PL++
Sbjct: 6 FNELNVSDEILKAVEEMGFEETTPIQTNAIPAVLNGQDIVGQAQTGTGKTAAFGIPLLE- 64
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA 261
++D E+ +P+AI+LC T E A Q + + +
Sbjct: 65 --EMDSENK----------------------NPQAIILCPTRELAIQVSEELKRLAKYKR 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ + GG S + ++I TP V+ HI + + D+I Y VLDEAD +
Sbjct: 101 RIYTLPVYGGQSIGRQIKALKKGVQIVIGTPGRVMDHIRRKTLKLDNINYFVLDEADVML 160
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF +I +L + D QT+ +A I
Sbjct: 161 DMGFIDDIETVLRDIPDDR--------QTLFFSATI 188
>gi|52308057|gb|AAU38557.1| SrmB protein [Mannheimia succiniciproducens MBEL55E]
Length = 462
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ L E++KA+ + G P+ IQ IPA ++ + V+ S+ +G+G+T A+LLP +Q
Sbjct: 23 FEDFDLSPELLKALAQKGYARPTAIQSEAIPAAMDERDVLGSAPTGTGKTAAFLLPAIQ- 81
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q A+ ++ +
Sbjct: 82 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAQQAEELAQFTK 121
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 122 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQ 181
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 182 MGFGQDAEKI 191
>gi|206559326|ref|YP_002230087.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|421868477|ref|ZP_16300125.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
gi|198035364|emb|CAR51239.1| putative ATP-dependent RNA helicase 1 [Burkholderia cenocepacia
J2315]
gi|358071499|emb|CCE51003.1| ATP-dependent RNA helicase RhlE [Burkholderia cenocepacia H111]
Length = 477
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTFYAEHR----GAKRAVR--------------ALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 19/194 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL E+ +A+ G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q
Sbjct: 38 TFADFGLAPEIQRALTDQGYTHPTPIQEQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQ 97
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
+ M ++ P + HP RA++L T E A Q K +
Sbjct: 98 LL----------------MAHASSSMSPAR--HPVRALILTPTRELAVQVAENVKAYAKH 139
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GG+ K + + ++IATP +L HIE +N+S ++ +V+DEAD +
Sbjct: 140 TPLRSTVVFGGMDMKPQTVLLRGGVEIVIATPGRLLDHIEQKNISLSQVQMLVMDEADRM 199
Query: 321 FDRGFGPEISKILN 334
D GF P++ +I+N
Sbjct: 200 LDMGFLPDLQRIIN 213
>gi|386716961|ref|YP_006183287.1| ATP-dependent RNA helicase RhlE [Stenotrophomonas maltophilia D457]
gi|384076523|emb|CCH11104.1| ATP-dependent RNA helicase RhlE [Stenotrophomonas maltophilia D457]
Length = 477
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+E + P PRA++L T E A Q + S
Sbjct: 62 HLGTASQE------------------VRAGPRKPRALILAPTRELATQVHDSLRGYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S+ GGV D+ + +L+A P ++ H+E R+V I ++LDEAD +
Sbjct: 104 RIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSVDLSGIEVLILDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P I +IL L Q QT+L +A
Sbjct: 164 DMGFLPSIKRILAKLPK-------QNRQTLLFSATF 192
>gi|344205917|ref|YP_004791058.1| DEAD/DEAH box helicase [Stenotrophomonas maltophilia JV3]
gi|343777279|gb|AEM49832.1| DEAD/DEAH box helicase domain protein [Stenotrophomonas maltophilia
JV3]
Length = 473
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+E + P PRA++L T E A Q + S
Sbjct: 62 HLGTASQE------------------VRAGPRKPRALILAPTRELATQVHDSLRGYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S+ GGV D+ + +L+A P ++ H+E R+V I ++LDEAD +
Sbjct: 104 RIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSVDLSGIEVLILDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P I +IL L Q QT+L +A
Sbjct: 164 DMGFLPSIKRILAKLPK-------QNRQTLLFSATF 192
>gi|107023606|ref|YP_621933.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690690|ref|YP_836313.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105893795|gb|ABF76960.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648779|gb|ABK09420.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 486
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTFYAEHR----GAKRAVR--------------ALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|195108365|ref|XP_001998763.1| GI24146 [Drosophila mojavensis]
gi|193915357|gb|EDW14224.1| GI24146 [Drosophila mojavensis]
Length = 829
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 40/241 (16%)
Query: 132 SSGSNAEVVSS---------FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVV 182
+SG N +++ + FQ LGL E++K + K G VP+ IQ IP +L G+ VV
Sbjct: 20 TSGGNDDILKTKPKSKKSGGFQSLGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVV 79
Query: 183 LSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242
+ +GSG+T +L+PL + ++ RR+ P K RA++L
Sbjct: 80 AMAKTGSGKTACFLIPLFE-----------------KLQRRE----PTKGA--RALILSP 116
Query: 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
T E A Q + K + L + + GG S + + +++ATP L +
Sbjct: 117 TRELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTCPDIIVATPGRFLHLCVEM 176
Query: 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362
++ + I YVV DEAD LF+ GFG ++++ L+ L S QT++ +A + ++L
Sbjct: 177 DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSR--------QTVMFSATLPKLLV 228
Query: 363 E 363
E
Sbjct: 229 E 229
>gi|407068274|ref|ZP_11099112.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 423
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 33/261 (12%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E SF +LGL ++ + ++ P+ +Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SESTKSFNQLGLSEHLLATLAELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LP++Q +++ + ++P P RA+VL T E A Q F
Sbjct: 62 LPIIQ-----------------RLIETKDNIIP-NPKLVRALVLVPTRELAQQVFDNVTE 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ + + GGVS K D +L+ATP ++ H+ +N+ +VLDE
Sbjct: 104 YAKGTDIKVVVAYGGVSMKVQTDNLRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA-------AIAEMLGEQLSSLM 369
AD + D GF P+I +IL+ + + QT+ +A AIA + + S +
Sbjct: 164 ADRMLDMGFMPDIKRILSRMNEVR--------QTLFFSATFDNKIKAIAHRMMQSPSEIQ 215
Query: 370 ECLERDNAGKVTAMLLEMDQA 390
+ A VT M+ +D++
Sbjct: 216 VTPKNSTAETVTQMVYPVDKS 236
>gi|294875674|ref|XP_002767430.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
gi|239868997|gb|EER00148.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
Length = 952
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 99/192 (51%), Gaps = 23/192 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+FQ +GL + KA++KMG P+ IQ IP +L G VV + +GSG+T A+++P++Q
Sbjct: 24 AFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAFVIPMIQ 83
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ H ++VG RA++L T E A Q + + +
Sbjct: 84 TL-----KGHSEVVG------------------ARAVILSPTRELAMQTIKVTRMLGKFT 120
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L + GG S ++ D ++ +LI TP ++ H+ + ++S ++Y+V DEAD LF
Sbjct: 121 DLRLCLIVGGHSMESQFDRLSSNPDVLICTPGRLVHHMVEADLSLQRVQYIVFDEADRLF 180
Query: 322 DRGFGPEISKIL 333
+ GF ++ IL
Sbjct: 181 EMGFSDDMQTIL 192
>gi|156973271|ref|YP_001444178.1| ATP-dependent RNA helicase SrmB [Vibrio harveyi ATCC BAA-1116]
gi|388600479|ref|ZP_10158875.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii DS40M4]
gi|424032046|ref|ZP_17771467.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-01]
gi|444427731|ref|ZP_21223102.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|156524865|gb|ABU69951.1| hypothetical protein VIBHAR_00952 [Vibrio harveyi ATCC BAA-1116]
gi|408876458|gb|EKM15575.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae HENC-01]
gi|444239029|gb|ELU50609.1| ATP-dependent RNA helicase SrmB [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 407
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+++MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIDEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|407785286|ref|ZP_11132434.1| ATP-dependent RNA helicase [Celeribacter baekdonensis B30]
gi|407203318|gb|EKE73305.1| ATP-dependent RNA helicase [Celeribacter baekdonensis B30]
Length = 542
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E G P+ IQ IP L G+ V+ + +G+G+T +++LP+
Sbjct: 23 LTKFSDLNLAPKVLKAIEDAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFVLPM 82
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q +
Sbjct: 83 IT------------------LLSRGRARARM----PRSLVLCPTRELAAQVAENFDTYTK 120
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + D++ +V+DEAD
Sbjct: 121 YMKLTKALLIGGVSFKEQDILIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADR 180
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I
Sbjct: 181 MLDMGFIPDIERIFG 195
>gi|219126769|ref|XP_002183622.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404859|gb|EEC44804.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 531
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 103/199 (51%), Gaps = 22/199 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPL 199
++ +LGL E+++A+ ++ L P+ +Q + IP +L + + + +GSG+TLAY LPL
Sbjct: 30 AWNQLGLWTELVEAMARLELQTPTPVQQLAIPELLKEPPQHLAFLAATGSGKTLAYALPL 89
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPM--KPMHPRAIVLCTTEESADQGFHMAKFI 257
+Q ML++ E +P PR ++L T E Q + K +
Sbjct: 90 LQ------------------MLKQGEVFADYERRPKRPRLLILVPTRELVVQITSVIKSV 131
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
SH +L S GG N PI +++ATP + +H +D N+ + ++V+DE
Sbjct: 132 SHSIKLSSCSITGGEDYGVQRRQLNRPIDVVVATPGRLTKHWKDSNLFLGSLEHIVVDEM 191
Query: 318 DTLFDRGFGPEISKILNPL 336
DT+ ++GF E+ ++L P+
Sbjct: 192 DTMLEQGFYRELRQLLYPV 210
>gi|206560771|ref|YP_002231536.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|444363801|ref|ZP_21164182.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|444368994|ref|ZP_21168777.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036813|emb|CAR52713.1| putative ATP-dependent RNA helicase 2 [Burkholderia cenocepacia
J2315]
gi|443594238|gb|ELT62906.1| DEAD/DEAH box helicase [Burkholderia cenocepacia BC7]
gi|443599860|gb|ELT68103.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 494
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 107/200 (53%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +ILN L
Sbjct: 170 ADRMLDMGFLPDLQRILNLL 189
>gi|170734034|ref|YP_001765981.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169817276|gb|ACA91859.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 486
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTFYAEHR----GAKRAVR--------------ALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|421868011|ref|ZP_16299663.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
gi|358071942|emb|CCE50541.1| ATP-dependent RNA helicase Bcep18194_A5658 [Burkholderia
cenocepacia H111]
Length = 494
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 107/200 (53%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +ILN L
Sbjct: 170 ADRMLDMGFLPDLQRILNLL 189
>gi|348618050|ref|ZP_08884583.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816755|emb|CCD29246.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 427
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 102/201 (50%), Gaps = 19/201 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+++ S F GL +++K++ + G VP+ IQ IPA L G+ V+ ++ +G+G+T +
Sbjct: 2 SDIFSHFSHFGLHDDLLKSIAEQGYAVPTPIQVHAIPAALAGRDVMGAAQTGTGKTAGFS 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAK 255
LP++Q L + ++ P + HP RA++L T E ADQ +
Sbjct: 62 LPILQRLLPLA----------------NASVSPAR--HPVRALILTPTRELADQVAANIR 103
Query: 256 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315
+ L S GGV KA + +L+ATP +L H+E +N+ +VLD
Sbjct: 104 AYAQYTLLRSLAVFGGVDMKAQAGELRRGVEILVATPGRLLDHLEQKNLQLGQTGILVLD 163
Query: 316 EADTLFDRGFGPEISKILNPL 336
EAD + D GF P++ KIL L
Sbjct: 164 EADRMLDMGFLPDLQKILAAL 184
>gi|299532061|ref|ZP_07045456.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
gi|298719976|gb|EFI60938.1| hypothetical protein CTS44_14723 [Comamonas testosteroni S44]
Length = 464
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 21/190 (11%)
Query: 152 MIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHH 211
+ +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q
Sbjct: 5 LARAVADMGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ---------- 54
Query: 212 LQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMEN 269
+++R + A P + HP RA+VL T E ADQ + +L S++
Sbjct: 55 -------RLMRHENASASPAR--HPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVF 105
Query: 270 GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 329
GG+ K + +L+ATP +L HIE +NV + + YVVLDEAD + D GF P++
Sbjct: 106 GGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDL 165
Query: 330 SKILNPLKDS 339
+IL+ L S
Sbjct: 166 QRILSYLPKS 175
>gi|221211314|ref|ZP_03584293.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
gi|221168675|gb|EEE01143.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD1]
Length = 480
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH + RA++L T E A Q + S
Sbjct: 62 RLHTFYTEHRSAKRAV------------------RALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|51449873|gb|AAU01909.1| putative ATP-dependent RNA helicase [Oryza sativa Indica Group]
Length = 828
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 47/259 (18%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+KP P +P+++ AS+R+ SG F+ +GL E+ + V G VP+ IQ
Sbjct: 3 EHKPLPGRPKRE--GEGASKRKAKSGG-------FESMGLCEEVYRGVRHKGYRVPTPIQ 53
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL 228
+P +L G + + +GSG+T A+L+P++ Q LRR +A
Sbjct: 54 RKAMPLILAGHDIAAMARTGSGKTAAFLVPMI------------------QRLRRHDAGA 95
Query: 229 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGM 287
+ RA++L T + A Q A+ + L S+ GG S ++ E+++ P +
Sbjct: 96 GI-----RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP-DI 149
Query: 288 LIATPSEVLQH---IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 344
+IATP ++ H +ED N+ + YVV DEAD+LF G ++ IL+ L D+
Sbjct: 150 IIATPGRLVHHLAEVEDLNLRT--VEYVVFDEADSLFSLGLIQQLHDILHKLSDTR---- 203
Query: 345 GQGFQTILVTAAIAEMLGE 363
QT+L +A + + L +
Sbjct: 204 ----QTLLFSATLPQALAD 218
>gi|189426565|ref|YP_001953742.1| DEAD/DEAH box helicase [Geobacter lovleyi SZ]
gi|189422824|gb|ACD97222.1| DEAD/DEAH box helicase domain protein [Geobacter lovleyi SZ]
Length = 436
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 24/203 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+ E++ A+ +G P+ IQ IP + G ++ + +G+G+T A+ LP+VQ
Sbjct: 7 SFDSLGLRPELLSAITSLGYTSPTPIQAEAIPVIFEGCDLLAGAQTGTGKTAAFALPIVQ 66
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHC 260
+ ++ K PRA+VL T E A Q M ++
Sbjct: 67 MLAETTPAE--------------------KRRKPRALVLVPTRELAAQVSDEMNRYARRL 106
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ L S+M GGV+ +A + + + +++ATP +L H E + I+++VLDEAD +
Sbjct: 107 S-LRSTMIYGGVTIQAQIERLHRGVDIVVATPGRLLDHAERGTIDLSRIKFLVLDEADRM 165
Query: 321 FDRGFGPEISKILN--PLKDSAL 341
D GF EI K+ P K AL
Sbjct: 166 LDLGFIDEIKKVAEYLPAKHQAL 188
>gi|219872069|ref|YP_002476444.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
gi|219692273|gb|ACL33496.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis SH0165]
Length = 441
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F+EL L E+++A+EK G P+ IQ IP + G+ V+ S+ +G+G+T A+LLP
Sbjct: 4 LTTFEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPA 63
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 64 LQ---------HL-----LDHPRR-------KPGPPRILILTPTRELAMQVAEQAEELTQ 102
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GGV+ + +V N +++ATP + Q+I++ N C + ++ DEAD
Sbjct: 103 FTSLKIATITGGVAYQNHGEVFNTNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADR 162
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 163 MLQMGFGQDAEKI 175
>gi|444372413|ref|ZP_21171888.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
gi|443593626|gb|ELT62346.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia
K56-2Valvano]
Length = 416
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTFYAEHR----GAKRAVR--------------ALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 33/204 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KAV++ G +P+ IQ IP VL G+ ++ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPII 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFH 252
Q LLP HP RA++L T E ADQ +
Sbjct: 71 Q------------------------RLLPQASTSASPARHPVRALILTPTRELADQVAAN 106
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H A L S++ GGV + + +LIATP +L H++ + + ++ +
Sbjct: 107 VQAYAKHTA-LRSAVVFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQIL 165
Query: 313 VLDEADTLFDRGFGPEISKILNPL 336
VLDEAD + D GF P++ +ILN L
Sbjct: 166 VLDEADRMLDMGFLPDLQRILNLL 189
>gi|424036922|ref|ZP_17775835.1| type III restriction enzyme, res subunit, partial [Vibrio cholerae
HENC-02]
gi|408896112|gb|EKM32294.1| type III restriction enzyme, res subunit, partial [Vibrio cholerae
HENC-02]
Length = 341
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++A+++MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFAELDLDQNLLEAIDEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + D+ +++ATP + ++I+ C I +++LDEAD
Sbjct: 100 KNTKLNIFTITGGVQYQEHADILATTQDIVVATPGRLREYIDAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|381150962|ref|ZP_09862831.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
gi|380882934|gb|EIC28811.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
Length = 425
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 19/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL A ++KAV + G P+ IQ IP +L+G+ V+ + +G+G+T ++ LPL+Q
Sbjct: 2 SFAQLGLAAPLLKAVAEQGYVTPTPIQQQTIPLILDGRDVLAGAQTGTGKTASFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
++ +++ P KP RA++L T E A Q +
Sbjct: 62 RLAESNDK-------------------PQKPRKIRALILAPTRELAAQVHDSVRAYGKHL 102
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L + + GGVS +++ATP +L H+ +N+ + +VLDEAD +
Sbjct: 103 PLFAEVVVGGVSINGQIRSLQRGCDIVVATPGRLLDHLLQKNIELSHLEILVLDEADRML 162
Query: 322 DRGFGPEISKILNPL 336
D GF P+I KI+ L
Sbjct: 163 DMGFLPDIRKIIGHL 177
>gi|195336302|ref|XP_002034780.1| GM14284 [Drosophila sechellia]
gi|194127873|gb|EDW49916.1| GM14284 [Drosophila sechellia]
Length = 827
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 31/221 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFE- 99
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RR+ P K RA++L T E A Q + K +
Sbjct: 100 ----------------KLQRRE----PTKGA--RALILSPTRELAVQTYKFIKELGRFME 137
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S + GG S + + +++ATP L + ++ + I YVV DEAD LF+
Sbjct: 138 LKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFE 197
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
GFG ++++ L+ L S QT++ +A + ++L E
Sbjct: 198 MGFGEQLNETLHRLPSSR--------QTVMFSATLPKLLVE 230
>gi|326772300|ref|ZP_08231585.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
gi|326638433|gb|EGE39334.1| ATP-dependent RNA helicase [Actinomyces viscosus C505]
Length = 540
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 104/212 (49%), Gaps = 27/212 (12%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
AS R S + A ++F ELG+ +++ ++ G P IQ +P L G+ V+
Sbjct: 8 ASHRFASGKTPAAGEATFAELGVDSDLAADLDARGFTAPFPIQAATLPDTLAGRDVLGRG 67
Query: 186 GSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+GSG+TLA+ LPLVQ +Q D+ +P HP +VL T E
Sbjct: 68 RTGSGKTLAFSLPLVQRLAQQDK---------------------ARPGHPIGLVLAPTRE 106
Query: 246 SADQGFHMAKFISHCAR---LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
A Q +A+ I AR +D + GGVS+K E A + +++A P +L +
Sbjct: 107 LALQ---IAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGRLLDLMGQG 163
Query: 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
VS D++ VLDEAD + D GF P + +IL
Sbjct: 164 LVSLDEVEITVLDEADHMADLGFLPNVRRILR 195
>gi|28575014|ref|NP_612028.4| CG32344 [Drosophila melanogaster]
gi|18447311|gb|AAL68229.1| LD28101p [Drosophila melanogaster]
gi|23092697|gb|AAN11439.1| CG32344 [Drosophila melanogaster]
gi|220947558|gb|ACL86322.1| CG32344-PA [synthetic construct]
Length = 827
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 31/221 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFE- 99
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RR+ P K RA++L T E A Q + K +
Sbjct: 100 ----------------KLQRRE----PTKGA--RALILSPTRELAVQTYKFIKELGRFME 137
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S + GG S + + +++ATP L + ++ + I YVV DEAD LF+
Sbjct: 138 LKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFE 197
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
GFG ++++ L+ L S QT++ +A + ++L E
Sbjct: 198 MGFGEQLNETLHRLPSSR--------QTVMFSATLPKLLVE 230
>gi|262163925|ref|ZP_06031664.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
gi|262027453|gb|EEY46119.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus VM223]
Length = 416
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|37573051|dbj|BAC98579.1| putative ATP-dependent RNA-helicase [Oryza sativa Japonica Group]
Length = 828
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 47/259 (18%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+KP P +P+++ AS+R+ SG F+ +GL E+ + V G VP+ IQ
Sbjct: 3 EHKPLPGRPKRE--GEGASKRKAKSGG-------FESMGLCEEVYRGVRHKGYRVPTPIQ 53
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL 228
+P +L G + + +GSG+T A+L+P++ Q LRR +A
Sbjct: 54 RKAMPLILAGHDIAAMARTGSGKTAAFLVPMI------------------QRLRRHDAGA 95
Query: 229 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGM 287
+ RA++L T + A Q A+ + L S+ GG S ++ E+++ P +
Sbjct: 96 GI-----RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP-DI 149
Query: 288 LIATPSEVLQH---IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 344
+IATP ++ H +ED N+ + YVV DEAD+LF G ++ IL+ L D+
Sbjct: 150 IIATPGRLVHHLAEVEDLNLRT--VEYVVFDEADSLFSLGLIQQLHDILHKLSDTR---- 203
Query: 345 GQGFQTILVTAAIAEMLGE 363
QT+L +A + + L +
Sbjct: 204 ----QTLLFSATLPQALAD 218
>gi|194864582|ref|XP_001971010.1| GG14669 [Drosophila erecta]
gi|190652793|gb|EDV50036.1| GG14669 [Drosophila erecta]
Length = 827
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 31/221 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFE- 99
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RR+ P K RA++L T E A Q + K +
Sbjct: 100 ----------------KLQRRE----PTKGA--RALILSPTRELAVQTYKFIKELGRFME 137
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S + GG S + + +++ATP L + ++ + I YVV DEAD LF+
Sbjct: 138 LKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFE 197
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
GFG ++++ L+ L S QT++ +A + ++L E
Sbjct: 198 MGFGEQLNETLHRLPSSR--------QTVMFSATLPKLLVE 230
>gi|449144109|ref|ZP_21774926.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus CAIM 602]
gi|449080209|gb|EMB51126.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus CAIM 602]
Length = 416
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|254524903|ref|ZP_05136958.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
SKA14]
gi|219722494|gb|EED41019.1| probable ATP-dependent rna helicase protein [Stenotrophomonas sp.
SKA14]
Length = 473
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+E + P PRA++L T E A Q + S
Sbjct: 62 HLGTASQE------------------VRSGPRKPRALILAPTRELATQVHDSLRGYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S+ GGV D+ + +L+A P ++ H+E R++ I +VLDEAD +
Sbjct: 104 RIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P I +IL L Q QT+L +A
Sbjct: 164 DMGFLPSIKRILAKLPK-------QNRQTLLFSATF 192
>gi|375111191|ref|ZP_09757402.1| DEAD/DEAH box helicase [Alishewanella jeotgali KCTC 22429]
gi|374568733|gb|EHR39905.1| DEAD/DEAH box helicase [Alishewanella jeotgali KCTC 22429]
Length = 449
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 114/218 (52%), Gaps = 28/218 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ FQ++GL ++++V+ +G P+EIQ IPAV+ G+ +++SS +GSG+TLAYLLP+
Sbjct: 5 ILQFQDMGLDPRLLRSVQHLGFARPTEIQQEAIPAVMVGRDLLVSSKTGSGKTLAYLLPM 64
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q + ++ L + +A RA++L T E A Q + +
Sbjct: 65 MQRLLK------------SRALSKQDA---------RALILTPTRELAKQVYAQLRLFVA 103
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+ + + GG + E + +++ATP + H+E ++V + ++LDEAD
Sbjct: 104 NTPVTAVLLVGGENFNDQEKLLKRQPDIIVATPGRFVDHLEHKSVFLQGLEMLILDEADR 163
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+ D GF P+++ I+N L+ QT+L +A +
Sbjct: 164 MLDLGFLPQLT-IINKAAAHRLR------QTLLFSATL 194
>gi|444357741|ref|ZP_21159253.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
gi|443605729|gb|ELT73559.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
Length = 403
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTFYAEHR----GAKRAVR--------------ALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|422349727|ref|ZP_16430616.1| hypothetical protein HMPREF9465_01506 [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657936|gb|EKB30816.1| hypothetical protein HMPREF9465_01506 [Sutterella wadsworthensis
2_1_59BFAA]
Length = 483
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 23/200 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+SSF + L + ++ A+E++G P+ IQ IP V+ G V+ ++ +G+G+T ++ LPL
Sbjct: 1 MSSFAQFNLDSRIMSAIERIGYKEPTPIQLQAIPVVMKGGDVMGAAQTGTGKTASFGLPL 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM-HP-RAIVLCTTEESADQ-GFHMAKF 256
I ++L A M P HP RA++L T E ADQ +M ++
Sbjct: 61 -----------------IARIL--PHANTSMSPARHPVRALILTPTRELADQVSANMTQY 101
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L + GGV + D+ + +L ATP +L HIE R + + VVLDE
Sbjct: 102 AADTP-LRVGVVYGGVDIRPQSDMLRRGVEILTATPGRLLDHIEQRATNLSQVEVVVLDE 160
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P+IS+IL L
Sbjct: 161 ADRMLDMGFLPDISRILKLL 180
>gi|167562078|ref|ZP_02354994.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis EO147]
Length = 408
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 33/206 (16%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 69 IIQ------------------------RLLPQASTSASPARHPVRALILTPTRELADQVA 104
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 105 ANVHAYAKHTP-LRSAVVFGGVDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQ 163
Query: 311 YVVLDEADTLFDRGFGPEISKILNPL 336
+VLDEAD + D GF P++ +ILN L
Sbjct: 164 ILVLDEADRMLDMGFLPDLQRILNLL 189
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 31 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 91 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 132
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 133 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 191
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 192 ADRMLDMGFLPDLQRILN 209
>gi|421472538|ref|ZP_15920727.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400222909|gb|EJO53257.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 407
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH + RA++L T E A Q + S
Sbjct: 62 RLHTFYTEHRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|421870283|ref|ZP_16301918.1| ATP-dependent RNA helicase NGO0650 [Burkholderia cenocepacia H111]
gi|358069809|emb|CCE52796.1| ATP-dependent RNA helicase NGO0650 [Burkholderia cenocepacia H111]
Length = 514
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 202 VYSQLDEEHHLQLVGITQMLRRD-EALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISH 259
++QL + Q + + D A P P +VL T E A Q A + H
Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 215
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I++ D+ QT+L +A + +G S L++ ER
Sbjct: 216 RMLDMGFIEDIETIVDATPDTR--------QTMLFSATLDGKIGSLTSRLLKDPER 263
>gi|258620330|ref|ZP_05715368.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
gi|258624701|ref|ZP_05719635.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
gi|424809634|ref|ZP_18235011.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus SX-4]
gi|258582988|gb|EEW07803.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM603]
gi|258587209|gb|EEW11920.1| Superfamily II DNA and RNA helicase [Vibrio mimicus VM573]
gi|342323122|gb|EGU18908.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus SX-4]
Length = 416
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|115352406|ref|YP_774245.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282394|gb|ABI87911.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 497
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 33/206 (16%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 69 IIQ------------------------RLLPQASTSASPARHPVRALILTPTRELADQVA 104
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H + L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 105 ANVHAYAKHTS-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 163
Query: 311 YVVLDEADTLFDRGFGPEISKILNPL 336
+VLDEAD + D GF P++ +ILN L
Sbjct: 164 ILVLDEADRMLDMGFLPDLQRILNLL 189
>gi|408823675|ref|ZP_11208565.1| ATP-dependent RNA helicase [Pseudomonas geniculata N1]
Length = 471
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+E + P PRA++L T E A Q + S
Sbjct: 62 HLGTASQE------------------VRSGPRKPRALILAPTRELATQVHDSLRGYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S+ GGV D+ + +L+A P ++ H+E R++ I +VLDEAD +
Sbjct: 104 RIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P I +IL L Q QT+L +A
Sbjct: 164 DMGFLPSIKRILAKLPK-------QNRQTLLFSATF 192
>gi|330828434|ref|YP_004391386.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
gi|423210879|ref|ZP_17197432.1| hypothetical protein HMPREF1169_02950 [Aeromonas veronii AER397]
gi|328803570|gb|AEB48769.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
B565]
gi|404614274|gb|EKB11275.1| hypothetical protein HMPREF1169_02950 [Aeromonas veronii AER397]
Length = 416
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 20/196 (10%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SF EL L + + + ++G P+ IQ IP +L G+ ++ + +G+G+T A++LPL+
Sbjct: 4 ASFAELALSPRLQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLL 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+ QL+ QM E+ P+ RA+VL T E A Q
Sbjct: 64 E-----------QLLAQPQM----ESQRPI-----RALVLVPTRELAVQVAESVARYGQG 103
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S+ GGVS A D + +LIATP +L H+ +S D +R++V DEAD +
Sbjct: 104 TGLTSTQVYGGVSIAAQVDALKNGVDLLIATPGRLLDHLRQGALSLDSLRHLVFDEADRM 163
Query: 321 FDRGFGPEISKILNPL 336
D GF EI+ +L L
Sbjct: 164 LDMGFMDEITALLKQL 179
>gi|187929488|ref|YP_001899975.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404396603|ref|ZP_10988397.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
gi|187726378|gb|ACD27543.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|348613693|gb|EGY63272.1| hypothetical protein HMPREF0989_03294 [Ralstonia sp. 5_2_56FAA]
Length = 493
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 107/195 (54%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL ++++A+ + G P+ IQ IP V G V+ ++ +G+G+T + LP++
Sbjct: 14 TFDSFGLHPDVLRALTESGYTKPTPIQAAAIPVVTAGHDVMGAAQTGTGKTAGFSLPII- 72
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGF-HMAKFISH 259
H+L + + + P + HP RA++L T E ADQ + ++AK+ +
Sbjct: 73 --------HNL-------LPDANTSASPAR--HPVRALILTPTRELADQVYDNVAKYAKY 115
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A L S++ GGV + + +L+ATP +L H++ R+V+ +R +VLDEAD
Sbjct: 116 TA-LRSAVVFGGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSVNLSQVRMLVLDEADR 174
Query: 320 LFDRGFGPEISKILN 334
+ D GF P++ +I+N
Sbjct: 175 MLDMGFLPDLQRIIN 189
>gi|410612255|ref|ZP_11323335.1| ATP-dependent RNA helicase RhlE [Glaciecola psychrophila 170]
gi|410168256|dbj|GAC37224.1| ATP-dependent RNA helicase RhlE [Glaciecola psychrophila 170]
Length = 410
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 37/262 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF L L + A++ +G +P+ IQ IPA+L+GK ++ + +G+G+T A+ LP++Q
Sbjct: 2 SFSSLALDKSLTDAIKALGYEIPTPIQQQAIPAILDGKDIMAGAQTGTGKTAAFALPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
Q+++ +AL P+ RA+VL T E A Q + +
Sbjct: 62 -----------------QLIKYADALRPI-----RALVLTPTRELAQQVYKNFVGYAENT 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L ++ GGVS + +LIATP +L I NV ++ +V DEAD +
Sbjct: 100 QLKVAVAYGGVSINPQISALERGVDILIATPGRLLDLIAKGNVDLSQLQTIVFDEADRML 159
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLSS--LMECLERD 375
D GF EI +IL+ L + QT+L +A AI ++ L++ L+E ER+
Sbjct: 160 DMGFKDEIDQILSRLPNKR--------QTLLFSATFDDAIFKLSKTLLNNPVLIEVSERN 211
Query: 376 N-AGKVTAMLLEMDQAEVFDLT 396
A +V ++ +D +LT
Sbjct: 212 TAAAQVEQLVYTVDNDRKRELT 233
>gi|332305447|ref|YP_004433298.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332172776|gb|AEE22030.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
Length = 412
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 117/254 (46%), Gaps = 31/254 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++L L E+ +AV +G P+ IQ + IPA + GK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLELDDELCRAVADLGYSEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
H P R ++L T E A Q ++ A +S
Sbjct: 62 LLDYPRRH---------------------PGSTRILILTPTRELAQQVYNQALELSRYTD 100
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ + GG++ ++ + +L+ATP + +HIE + C DI ++LDEAD + D
Sbjct: 101 IVCGVITGGINYGTDKETLEKNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLD 160
Query: 323 RGFGPEISKILNPLKDSA-LKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE----RDNA 377
GF S I+N + A + F L A I+ + L+ +E LE R
Sbjct: 161 MGF----SSIVNQISAEARWRKQSMLFSATLEGAGISRFAKDILNDPVE-LEAASSRKEQ 215
Query: 378 GKVTAMLLEMDQAE 391
GK+ L D A+
Sbjct: 216 GKIHQWLHLADDAK 229
>gi|195583246|ref|XP_002081434.1| GD25714 [Drosophila simulans]
gi|194193443|gb|EDX07019.1| GD25714 [Drosophila simulans]
Length = 827
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 31/221 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFE- 99
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RR+ P K RA++L T E A Q + K +
Sbjct: 100 ----------------KLQRRE----PTKGA--RALILSPTRELAVQTYKFIKELGRFME 137
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S + GG S + + +++ATP L + ++ + I YVV DEAD LF+
Sbjct: 138 LKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFE 197
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
GFG ++++ L+ L S QT++ +A + ++L E
Sbjct: 198 MGFGEQLNETLHRLPSSR--------QTVMFSATLPKLLVE 230
>gi|161523807|ref|YP_001578819.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189351431|ref|YP_001947059.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341236|gb|ABX14322.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189335453|dbj|BAG44523.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 480
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH + RA++L T E A Q + S
Sbjct: 62 RLHTFYTEHRSAKRAV------------------RALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 19/192 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL +++AV G P+ IQ IP V+ G ++ ++ +G+G+T + LP++
Sbjct: 6 TFAALGLAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLPILH 65
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L+ Q R KP PRA++L T E A Q + S
Sbjct: 66 -----------RLLNNPQQNR--------KPGRPRALILAPTRELAAQVEESVRLYSQHT 106
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
RL S + GGV+ P+ +L+ATP +L H+ R V + +VLDEAD +
Sbjct: 107 RLRSMVMFGGVNINPQFHALRKPLDILVATPGRLLDHVRQRTVDLTGVEILVLDEADRML 166
Query: 322 DRGFGPEISKIL 333
D GF +I KI+
Sbjct: 167 DMGFIRDIRKII 178
>gi|167569331|ref|ZP_02362205.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 411
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 33/206 (16%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL AE++KA+ G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 69 IIQ------------------------RLLPQASTSASPARHPVRALILTPTRELADQVA 104
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 105 ANVHAYAKHTP-LRSAVVFGGVDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQ 163
Query: 311 YVVLDEADTLFDRGFGPEISKILNPL 336
+VLDEAD + D GF P++ +ILN L
Sbjct: 164 ILVLDEADRMLDMGFLPDLQRILNLL 189
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 170 ADRMLDMGFLPDLQRILN 187
>gi|456737831|gb|EMF62508.1| ATP-dependent RNA helicase RhlE [Stenotrophomonas maltophilia EPM1]
Length = 470
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+E + P PRA++L T E A Q + S
Sbjct: 62 HLGTASQE------------------VRSGPRKPRALILAPTRELATQVHDSLRGYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S+ GGV D+ + +L+A P ++ H+E R++ I +VLDEAD +
Sbjct: 104 RIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P I +IL L Q QT+L +A
Sbjct: 164 DMGFLPSIKRILAKLPK-------QNRQTLLFSATF 192
>gi|424666934|ref|ZP_18103959.1| hypothetical protein A1OC_00492 [Stenotrophomonas maltophilia
Ab55555]
gi|401069603|gb|EJP78124.1| hypothetical protein A1OC_00492 [Stenotrophomonas maltophilia
Ab55555]
Length = 470
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+E + P PRA++L T E A Q + S
Sbjct: 62 HLGTASQE------------------VRSGPRKPRALILAPTRELATQVHDSLRGYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S+ GGV D+ + +L+A P ++ H+E R++ I +VLDEAD +
Sbjct: 104 RIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P I +IL L Q QT+L +A
Sbjct: 164 DMGFLPSIKRILAKLPK-------QNRQTLLFSATF 192
>gi|37197585|dbj|BAC93424.1| DNA and RNA helicase [Vibrio vulnificus YJ016]
Length = 441
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 100/196 (51%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V+ +F +L L ++ A+E+MG P++IQ IP L G+ ++ S+ +G+G+T A++LP
Sbjct: 34 VIRTFADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP 93
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 94 ALQ---------YLQ-----DFPRR-------KPGPARVLILTPTRELAMQVADQARALA 132
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L+ GGV + D+ +++ATP ++++I+ C I +++LDEAD
Sbjct: 133 KNTSLNIFTITGGVQYQEHADILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEAD 192
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 193 RMLDMGFAPTVDRLSN 208
>gi|190572660|ref|YP_001970505.1| ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia K279a]
gi|190010582|emb|CAQ44191.1| putative ATP-dependent RNA helicase 1 [Stenotrophomonas maltophilia
K279a]
Length = 470
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+E + P PRA++L T E A Q + S
Sbjct: 62 HLGTASQE------------------VRSGPRKPRALILAPTRELATQVHDSLRGYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S+ GGV D+ + +L+A P ++ H+E R++ I +VLDEAD +
Sbjct: 104 RIPSACIYGGVGMGNQLDILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P I +IL L Q QT+L +A
Sbjct: 164 DMGFLPSIKRILAKLPK-------QNRQTLLFSATF 192
>gi|115476424|ref|NP_001061808.1| Os08g0416100 [Oryza sativa Japonica Group]
gi|158513705|sp|A3BT52.2|RH29_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
gi|113623777|dbj|BAF23722.1| Os08g0416100 [Oryza sativa Japonica Group]
gi|222640554|gb|EEE68686.1| hypothetical protein OsJ_27320 [Oryza sativa Japonica Group]
Length = 851
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 47/259 (18%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+KP P +P+++ AS+R+ SG F+ +GL E+ + V G VP+ IQ
Sbjct: 26 EHKPLPGRPKRE--GEGASKRKAKSGG-------FESMGLCEEVYRGVRHKGYRVPTPIQ 76
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL 228
+P +L G + + +GSG+T A+L+P++ Q LRR +A
Sbjct: 77 RKAMPLILAGHDIAAMARTGSGKTAAFLVPMI------------------QRLRRHDAGA 118
Query: 229 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGM 287
+ RA++L T + A Q A+ + L S+ GG S ++ E+++ P +
Sbjct: 119 GI-----RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP-DI 172
Query: 288 LIATPSEVLQH---IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 344
+IATP ++ H +ED N+ + YVV DEAD+LF G ++ IL+ L D+
Sbjct: 173 IIATPGRLVHHLAEVEDLNLRT--VEYVVFDEADSLFSLGLIQQLHDILHKLSDTR---- 226
Query: 345 GQGFQTILVTAAIAEMLGE 363
QT+L +A + + L +
Sbjct: 227 ----QTLLFSATLPQALAD 241
>gi|421477647|ref|ZP_15925459.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
gi|400226180|gb|EJO56273.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans CF2]
Length = 414
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH + RA++L T E A Q + S
Sbjct: 62 RLHTFYTEHRSAKRAV------------------RALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|262172263|ref|ZP_06039941.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
gi|261893339|gb|EEY39325.1| ATP-dependent RNA helicase SrmB [Vibrio mimicus MB-451]
Length = 416
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPVLLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|365538577|ref|ZP_09363752.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 412
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 105/194 (54%), Gaps = 21/194 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F LGL ++KAV ++G P+ IQ IPA+L GK+V+ ++ +G+G+T +++LP++Q+
Sbjct: 3 FSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVIAAAQTGTGKTASFVLPILQM 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
SQ G TQ +R AL+ + P + EE+ Q AK++
Sbjct: 63 LSQ----------GTTQRAKRVRALI----LAPTRELALQVEENITQ---YAKYLP---- 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S GGV S+ + + +LIATP +L R V D++ +V+DEAD + D
Sbjct: 102 LTSLAMYGGVDSQKQKQRLIEGVDILIATPGRLLDMYGQRAVHFDELEVLVMDEADRMLD 161
Query: 323 RGFGPEISKILNPL 336
GF +I+KI++ L
Sbjct: 162 MGFIEDINKIVDRL 175
>gi|417845119|ref|ZP_12491151.1| putative dEAD-like helicase [Haemophilus haemolyticus M21639]
gi|341955828|gb|EGT82277.1| putative dEAD-like helicase [Haemophilus haemolyticus M21639]
Length = 247
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ L E++KA+EK G P+ IQ IPA + V+ S+ +G+G+T A+LLP +Q
Sbjct: 6 FEQFDLSPELLKALEKKGYSRPTAIQMESIPAAMEECDVLGSAPTGTGKTAAFLLPALQ- 64
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL + R KP PR +VL T E A Q A+ ++
Sbjct: 65 --------HL----LDYPCR--------KPGPPRILVLTPTRELAMQVAEQAEELAQFTH 104
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L+ + GGV+ + DV N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 105 LNIATITGGVAYQNHGDVFNTNQDLVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQ 164
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 165 MGFGQDAEKI 174
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 170 ADRMLDMGFLPDLQRILN 187
>gi|343500583|ref|ZP_08738474.1| ATP-dependent RNA helicase SrmB [Vibrio tubiashii ATCC 19109]
gi|418480980|ref|ZP_13050032.1| ATP-dependent RNA helicase SrmB [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820153|gb|EGU54982.1| ATP-dependent RNA helicase SrmB [Vibrio tubiashii ATCC 19109]
gi|384571425|gb|EIF01959.1| ATP-dependent RNA helicase SrmB [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 410
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L ++ A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRNFAELELDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARILILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L+ GGV + ++ +++ATP ++++I C I +++LDEAD
Sbjct: 100 KHTKLNIFTITGGVQYQEHAEILGKTQDIVVATPGRLMEYINAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKI 332
+ D GFGP + ++
Sbjct: 160 RMLDMGFGPTVDRL 173
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 170 ADRMLDMGFLPDLQRILN 187
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 170 ADRMLDMGFLPDLQRILN 187
>gi|153006338|ref|YP_001380663.1| DEAD/DEAH box helicase [Anaeromyxobacter sp. Fw109-5]
gi|152029911|gb|ABS27679.1| DEAD/DEAH box helicase domain protein [Anaeromyxobacter sp.
Fw109-5]
Length = 455
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 36/219 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SF EL L E + A+ + G P+ IQ IP L GK V+ ++ +G+G+T A+LLPL+
Sbjct: 4 TSFAELHLSPEALAALRRAGFEHPTPIQAQAIPPALAGKDVIGTAATGTGKTAAFLLPLI 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISH 259
+L G KP RA+VL T E A Q G + +F H
Sbjct: 64 D-----------RLAG--------------KPG-TRALVLAPTRELALQIGEELERF-GH 96
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
R+ ++ GGV + ++IATP ++ H+E N D I +VLDEAD
Sbjct: 97 ARRVRGAVIIGGVGMAQQAEALRQKREIVIATPGRLVDHLEQGNARLDGIEALVLDEADR 156
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
+ D GF P++ +IL L QT+L +A +A
Sbjct: 157 MLDMGFKPQLDRILRRLPKQR--------QTLLFSATMA 187
>gi|343518158|ref|ZP_08755152.1| type III restriction enzyme, res subunit [Haemophilus pittmaniae HK
85]
gi|343393954|gb|EGV06504.1| type III restriction enzyme, res subunit [Haemophilus pittmaniae HK
85]
Length = 288
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+S F L E++KA++K G P+ +Q IP L G+ ++ S+ +G+G+T A+LLP
Sbjct: 50 LSQFSAFELSPELLKAIDKKGYSRPTAVQNEAIPTALEGRDLLGSAPTGTGKTAAFLLPA 109
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR +VL T E A Q ++ +
Sbjct: 110 IQ---------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQSEQLCQ 148
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L ++ GGV+ + ++ N +++ATP +LQ+I + N C + ++LDEAD
Sbjct: 149 FTNLKTATITGGVAYQNHGEIFNENQDIVVATPGRLLQYIAEENFDCRAVEILILDEADR 208
Query: 320 LFDRGFGPEISKI 332
L GFG + KI
Sbjct: 209 LLAMGFGQDAEKI 221
>gi|334703122|ref|ZP_08518988.1| putative ATP-dependent RNA helicase RhlE [Aeromonas caviae Ae398]
Length = 417
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 38/241 (15%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF EL L + + + +G P+ +Q IP +L G+ ++ + +G+G+T A++LPL
Sbjct: 3 IASFAELALSPRLQQTLTDLGYAAPTPVQASAIPLILAGRDLMAGAQTGTGKTAAFVLPL 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
++ Q+L+ + P +P+ RA+VL T E A Q +A+ ++
Sbjct: 63 LE-----------------QLLQHPTSDAP-RPI--RALVLVPTRELAVQ---VAESVTR 99
Query: 260 CAR---LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
AR L S++ GGVS A + NA + +LIATP +L H+ ++ ++R++V DE
Sbjct: 100 YARGTTLTSTLVYGGVSIAAQVEALNAGVDILIATPGRLLDHLRQGGLTLAELRHLVFDE 159
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376
AD + D GF EI +L + QT+L +A + L +L + L RD
Sbjct: 160 ADRMLDMGFMDEIKALLKQIPADR--------QTLLFSATC----DDNLFALCKVLLRDP 207
Query: 377 A 377
A
Sbjct: 208 A 208
>gi|161486658|ref|NP_933453.2| ATP-dependent RNA helicase SrmB [Vibrio vulnificus YJ016]
Length = 408
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 100/196 (51%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P++IQ IP L G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFADLDLDPNLLSAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARVLILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L+ GGV + D+ +++ATP ++++I+ C I +++LDEAD
Sbjct: 100 KNTSLNIFTITGGVQYQEHADILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 169
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 170 ADRMLDMGFLPDLQRILN 187
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 33/203 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++KA+++ G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 34 TFDQFGLAPDILKAIKESGYTSPTPIQAKAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQ 93
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFHM 253
LLP HP RA++L T E ADQ ++
Sbjct: 94 ------------------------RLLPQASTSASPARHPVRALILTPTRELADQVAANV 129
Query: 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ H A L S++ GGV + + +LIATP +L H++ + + ++ +V
Sbjct: 130 QAYAKHTA-LRSAVVFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQMLV 188
Query: 314 LDEADTLFDRGFGPEISKILNPL 336
LDEAD + D GF P++ +ILN L
Sbjct: 189 LDEADRMLDMGFLPDLQRILNLL 211
>gi|358636156|dbj|BAL23453.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 480
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 21/200 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL E+++AV G P+ IQ IP VL G+ ++ + +G+G+T + LPL+
Sbjct: 2 SFADLGLIPELLRAVADTGYTTPTPIQQQAIPVVLAGRDIMGGAQTGTGKTAGFTLPLLN 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
L R + HP RA++L T E A Q F K S
Sbjct: 62 ------------------RLARHASASTSPARHPVRALILAPTRELAMQVFESVKTYSKY 103
Query: 261 ARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L ++ GGV K ++++ N + +++ATP +L H++ + + + + +VLDEAD
Sbjct: 104 VPLRTTCIYGGVDMKPQIQELRNG-VEIVVATPGRLLDHVQQKTIVLNQVEMLVLDEADR 162
Query: 320 LFDRGFGPEISKILNPLKDS 339
+ D GF P+I +IL+ L S
Sbjct: 163 MLDMGFIPDIRRILDLLPAS 182
>gi|260777564|ref|ZP_05886457.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
gi|260605577|gb|EEX31862.1| ATP-dependent RNA helicase [Vibrio coralliilyticus ATCC BAA-450]
Length = 420
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 97/197 (49%), Gaps = 18/197 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+SSFQ LGL + VEK+G P+ IQ IP VL GK V+ + +G+G+T A+ LPL
Sbjct: 1 MSSFQHLGLSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDVLAGAQTGTGKTAAFGLPL 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ LD+E ++ + ++ L A+V+ T E A Q F +
Sbjct: 61 LN--KLLDQE-------ASRDPQSNDVL---------ALVVVPTRELAQQVFDSLTAYAS 102
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A + GG S +LIATP +L H+ +N++ Y+VLDEAD
Sbjct: 103 AAEIKIVTAYGGTSMNVQTQNLRQGCDVLIATPGRLLDHLYCKNINLRKTSYLVLDEADR 162
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF P+I +IL L
Sbjct: 163 MLDMGFMPDIQRILKKL 179
>gi|284006731|emb|CBA71988.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
Length = 449
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 110/233 (47%), Gaps = 34/233 (14%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F EL L ++ A++ G P+ IQ IPA + G+ ++ SS +G+G+T AYLLP++
Sbjct: 11 TTFSELELDQSLLNALDDKGYERPTAIQLATIPAAMEGRDILGSSPTGTGKTAAYLLPVI 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAKFISH 259
Q H L P K PR ++L T E A Q AK ++
Sbjct: 71 Q--------HLLD--------------FPRKRSGPPRILILTPTRELAMQVAEQAKALAK 108
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGVS ++ + +++AT +LQ+I++ N C I ++LDEAD
Sbjct: 109 YTHLDIATITGGVSYVNHAEIFSENQDIVVATTGRLLQYIKEENFDCRAIETLILDEADR 168
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372
+ D GF +I I + QT+L +A +A GE + E L
Sbjct: 169 MLDMGFANDIETIAGETRWRK--------QTMLFSATLA---GEAIHDFAERL 210
>gi|153826515|ref|ZP_01979182.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
gi|149739695|gb|EDM53902.1| ATP-dependent RNA helicase SrmB [Vibrio cholerae MZO-2]
Length = 423
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+++P
Sbjct: 1 MIKTFANLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|221200134|ref|ZP_03573177.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
gi|221206713|ref|ZP_03579725.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221173368|gb|EEE05803.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2]
gi|221180373|gb|EEE12777.1| putative ATP-dependent RNA helicase RhlE [Burkholderia multivorans
CGD2M]
Length = 480
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH + RA++L T E A Q + S
Sbjct: 62 RLHTFYTEHRSAKRAV------------------RALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + D+ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|27363997|ref|NP_759525.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
gi|27360114|gb|AAO09052.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus CMCP6]
Length = 408
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 100/196 (51%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P++IQ IP L G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARVLILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L+ GGV + D+ +++ATP ++++I+ C I +++LDEAD
Sbjct: 100 KNTSLNIFTITGGVQYQEHADILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|75908173|ref|YP_322469.1| DEAD/DEAH box helicase [Anabaena variabilis ATCC 29413]
gi|75701898|gb|ABA21574.1| DEAD/DEAH box helicase-like protein [Anabaena variabilis ATCC
29413]
Length = 426
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 19/196 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I+AV ++G P+ IQ IPAVL+G+ ++ + +G+G+T ++ LPL+
Sbjct: 2 SFSHLGLSNEIIRAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
+ SQ D P P RA++L T E A Q +
Sbjct: 62 LLSQ------------------DSLKSASSPSSPIRALILTPTRELAAQVESSVRDYGKY 103
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L+S + GGVS + + +L+ATP +L H++ V+ I +VLDEAD +
Sbjct: 104 LNLNSMVMFGGVSINPQKQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRM 163
Query: 321 FDRGFGPEISKILNPL 336
D GF +I +IL+ L
Sbjct: 164 LDMGFIRDIRRILSLL 179
>gi|172061278|ref|YP_001808930.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993795|gb|ACB64714.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 511
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 33/206 (16%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 31 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 91 IIQ------------------------RLLPQASTSASPARHPVRALILTPTRELADQVA 126
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H + L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 127 ANVHAYAKHTS-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 185
Query: 311 YVVLDEADTLFDRGFGPEISKILNPL 336
+VLDEAD + D GF P++ +ILN L
Sbjct: 186 ILVLDEADRMLDMGFLPDLQRILNLL 211
>gi|392373513|ref|YP_003205346.1| ATP-dependent RNA helicase with P-loop hydrolase domain (rhlE gene)
[Candidatus Methylomirabilis oxyfera]
gi|258591206|emb|CBE67503.1| Putative ATP-dependent RNA helicase with P-loop hydrolase domain
(rhlE gene) [Candidatus Methylomirabilis oxyfera]
Length = 479
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 93/193 (48%), Gaps = 26/193 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF L A ++KAV MG P+ IQ V +P +L G+ V+ S+ +GSG+T A+LLP++
Sbjct: 2 SFSSFKLNANLLKAVHNMGFKSPTPIQRVAVPPLLEGRDVMASAVTGSGKTAAFLLPILH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHC 260
+ G T RA+VL T E A Q H+ + +H
Sbjct: 62 CLMEKPR-------GTT-----------------RALVLAPTRELAAQISDHLRELAAHT 97
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L + GGVS E + +LIATP +L H + I ++VLDEAD +
Sbjct: 98 P-LKGAAVYGGVSMGPQEQAFRRGVDVLIATPGRLLDHFQYPYARLAGIEHLVLDEADRM 156
Query: 321 FDRGFGPEISKIL 333
D GF P+I +IL
Sbjct: 157 LDMGFLPDIRRIL 169
>gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 419
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 19/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF + L ++I + ++G P+ IQ IP +L G+ ++ + +G+G+T A+ LP++Q
Sbjct: 2 SFSSMALSQKLITLLSELGYSSPTPIQAHAIPVILAGQDIMAGAQTGTGKTAAFALPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESA---DQGFHMAKFIS 258
S+ D E L + + +KP+ RA+VL T E A +Q F AK+
Sbjct: 62 KLSECDVE-----------LSDTKQTVSLKPV--RALVLTPTRELALQVNQSF--AKYGK 106
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L++++ GGVS A D A + +L+ATP +L H+ +++ + ++V DEAD
Sbjct: 107 DSG-LNTAIVYGGVSIDAQADALKAGVDILVATPGRLLDHLRRGSLTLKQLNFLVFDEAD 165
Query: 319 TLFDRGFGPEISKIL 333
+ D GF EI+ IL
Sbjct: 166 RMLDMGFKDEINAIL 180
>gi|336315118|ref|ZP_08570030.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335880529|gb|EGM78416.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 438
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 117/237 (49%), Gaps = 29/237 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +L L ++++++ +G P+ IQ +PA + GK +++SS +GSG+TLAYLLP++Q
Sbjct: 3 FHDLALDPRLVRSIQHLGFAQPTPIQQEAVPAAMTGKDLMVSSQTGSGKTLAYLLPMMQ- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++LR P+ RA++L T E A Q + +
Sbjct: 62 ----------------RLLRSR----PLSKQDARALILVPTRELAHQVYAKLRLFVANTP 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S++ GG + E + +++ATP + H++ + + ++LDEAD + D
Sbjct: 102 LTSALIVGGENFNEQEKILKRQPTIIVATPGRFIDHLQHKTFFIQGLEMLILDEADRMLD 161
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM-LGEQLSSLMECLERDNAG 378
GF P++++I N D L+ QT++ +A + + E SL++ R + G
Sbjct: 162 LGFMPQLNEI-NKAADHRLR------QTLMFSATLDHAEVNELAMSLLKSPHRVSVG 211
>gi|320157377|ref|YP_004189756.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
gi|319932689|gb|ADV87553.1| ATP-dependent RNA helicase SrmB [Vibrio vulnificus MO6-24/O]
Length = 408
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 100/196 (51%), Gaps = 21/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L ++ A+E+MG P++IQ IP L G+ ++ S+ +G+G+T A++LP
Sbjct: 1 MIRTFADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q +LQ RR KP R ++L T E A Q A+ ++
Sbjct: 61 ALQ---------YLQ-----DFPRR-------KPGPARVLILTPTRELAMQVADQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L+ GGV + D+ +++ATP ++++I+ C I +++LDEAD
Sbjct: 100 KNTSLNIFTITGGVQYQEHADILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + ++ N
Sbjct: 160 RMLDMGFAPTVDRLSN 175
>gi|261212229|ref|ZP_05926515.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
gi|260838837|gb|EEX65488.1| ATP-dependent RNA helicase SrmB [Vibrio sp. RC341]
Length = 421
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E+MG P+++Q IP L+G+ V+ S+ +G+G+T A+ +P
Sbjct: 1 MIKTFADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFAIP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+Q LD P + P R ++L T E A Q A+ +
Sbjct: 61 ALQYL--LD--------------------FPRRKAGPARILILTPTRELAMQVAEQAQAL 98
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ RL+ GGV + D+ +++ATP +L++I+ C I +++LDEA
Sbjct: 99 AKNTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEA 158
Query: 318 DTLFDRGFGPEISKI 332
D + D GFGP + ++
Sbjct: 159 DRMLDMGFGPTVDRL 173
>gi|440730386|ref|ZP_20910475.1| ATP-dependent RNA helicase, partial [Xanthomonas translucens
DAR61454]
gi|440378920|gb|ELQ15528.1| ATP-dependent RNA helicase, partial [Xanthomonas translucens
DAR61454]
Length = 439
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 104/222 (46%), Gaps = 33/222 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTPIQLQAIPLALAGHDLMAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHL----QLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
HL Q VG RR PRA++L T E A Q +
Sbjct: 62 ---------HLGTSPQPVG--NGARR-----------PRALILTPTRELATQVHDSLRGY 99
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
S R+ S+ GGV D + +LIA P +L H+E R+V I +VLDEA
Sbjct: 100 SKYLRIPSTTIYGGVGMGNQLDALRRGVDLLIACPGRLLDHLERRSVDLSGIEILVLDEA 159
Query: 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D + D GF P I +IL L Q QT+L +A E
Sbjct: 160 DRMLDMGFLPSIKRILAKLPK-------QNRQTLLFSATFEE 194
>gi|357418532|ref|YP_004931552.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
gi|355336110|gb|AER57511.1| ATP-dependent RNA helicase [Pseudoxanthomonas spadix BD-a59]
Length = 456
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP L G+ ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFETLGLAPFLLRALAEQGYETPTPIQEQAIPLALAGRDLMAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H Q V P PRA+VL T E A Q + S
Sbjct: 62 HLGT-----HPQAVT-------------RGPRRPRALVLTPTRELATQVHESLRDYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S+ GGV D + ++IA P ++ H+E R+V I +VLDEAD +
Sbjct: 104 RIPSATIYGGVGMGPQLDTLRRGVDLVIACPGRLIDHLERRSVDLSGIEVLVLDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P I +IL L Q QT+L +A
Sbjct: 164 DMGFLPSIKRILAKLPK-------QNRQTLLFSATF 192
>gi|423074241|ref|ZP_17062973.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
gi|361854959|gb|EHL06986.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DP7]
Length = 443
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 102/188 (54%), Gaps = 25/188 (13%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
N E SFQELG++AE+++A+ K G+ P+EIQ IP +LN + V S +GSG+TLAY
Sbjct: 3 NMERPESFQELGIQAELVEALAKEGIVQPTEIQKSTIPLILNNRDVAGQSETGSGKTLAY 62
Query: 196 LLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
LLP++Q ++D +R+ +L + P H + L + D H+A
Sbjct: 63 LLPVLQ---KIDRN------------KRENQVLVLTPTHE--LALQVQRQIQDLSRHLAA 105
Query: 256 FISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
I+ A + G V+ ++ +E + P +++ + +L+ I+ R +S ++ +VL
Sbjct: 106 TITSAAII------GNVNIARQIEKLKEKP-HIIVGSAGRILELIQKRKISAQSLKTIVL 158
Query: 315 DEADTLFD 322
DEAD L D
Sbjct: 159 DEADQLLD 166
>gi|219668951|ref|YP_002459386.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539211|gb|ACL20950.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 443
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 102/188 (54%), Gaps = 25/188 (13%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
N E SFQELG++AE+++A+ K G+ P+EIQ IP +LN + V S +GSG+TLAY
Sbjct: 3 NMERPESFQELGIQAELVEALAKEGIVQPTEIQKSTIPLILNNRDVAGQSETGSGKTLAY 62
Query: 196 LLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
LLP++Q ++D +R+ +L + P H + L + D H+A
Sbjct: 63 LLPVLQ---KIDRN------------KRENQVLVLTPTHE--LALQVQRQIQDLSRHLAA 105
Query: 256 FISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
I+ A + G V+ ++ +E + P +++ + +L+ I+ R +S ++ +VL
Sbjct: 106 TITSAAII------GNVNIARQIEKLKEKP-HIIVGSAGRILELIQKRKISAQSLKTIVL 158
Query: 315 DEADTLFD 322
DEAD L D
Sbjct: 159 DEADQLLD 166
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL +++KA+ G P+ IQ IP VL+G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAPDILKAIADQGYTKPTPIQAKAIPVVLSGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHSY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H A L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 AKHTA-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDE 169
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 170 ADRMLDMGFLPDLQRILN 187
>gi|416052217|ref|ZP_11578119.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992307|gb|EGY33716.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 443
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSASTGTGKTAAFLLPAIQ- 65
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q AK ++ +
Sbjct: 66 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTK 105
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 106 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQ 165
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 166 MGFGQDAEKI 175
>gi|402565885|ref|YP_006615230.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247082|gb|AFQ47536.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 574
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 83 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 142
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 143 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 184
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 185 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 243
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 244 ADRMLDMGFLPDLQRILN 261
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 19/196 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++++ + G +P+ IQ IP V+ G+ V+ ++ +G+G+T A+ LP++
Sbjct: 18 TFADFGLHPLLLQSIAETGYTIPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPIL- 76
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
H L M + + P + HP RA++L T E ADQ + K S
Sbjct: 77 --------HRL-------MPLANASASPAR--HPVRALILTPTRELADQVYESVKRYSKQ 119
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GGV ++ +L+ATP +L H+E +NV+ + +VLDEAD +
Sbjct: 120 TPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRM 179
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +I+ L
Sbjct: 180 LDMGFLPDLERIIRLL 195
>gi|163855229|ref|YP_001629527.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 476
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 19/195 (9%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+F + GL +++++V G P+ IQ +PAV+ G+ V+ ++ +G+G+T A+ LP++
Sbjct: 17 STFADFGLHPQLLQSVADTGYTTPTPIQAQALPAVMAGRDVMGAAQTGTGKTAAFTLPIL 76
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISH 259
H L + T + P + HP R ++L T E ADQ + K S
Sbjct: 77 ---------HRLMPLANT-------SASPAR--HPVRTLILTPTRELADQVYESVKRYSK 118
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S++ GGV ++ +L+ATP +L H+E + V+ + +VLDEAD
Sbjct: 119 HTPLRSAVVFGGVDIGPQKEALRRGCEILVATPGRLLDHVEQKTVNLSQVGILVLDEADR 178
Query: 320 LFDRGFGPEISKILN 334
+ D GF P++ +I+
Sbjct: 179 MLDMGFLPDLDRIVR 193
>gi|345308684|ref|XP_003428729.1| PREDICTED: probable ATP-dependent RNA helicase DDX41, partial
[Ornithorhynchus anatinus]
Length = 609
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 129/266 (48%), Gaps = 29/266 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 169 IKSFREMKFPAAVLRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 228
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 229 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 271
Query: 260 CAR------LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ L ++ GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 272 LLQEENSPPLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 331
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQ---GFQTILVT-AAIAEMLGEQLSSLM 369
LDEAD + D GF +I I + K L G+ G ++ T + ++L +++ SL
Sbjct: 332 LDEADRMIDMGFEGDIRTIFSYFKVRPLLQGGRDRVGVHMMVATPGRLMDLLQKKMVSLD 391
Query: 370 EC--LERDNAGKVTAMLLEMDQAEVF 393
C L D A ++ M E D +F
Sbjct: 392 ICRYLALDEADRMIDMGFEGDIRTIF 417
>gi|393910125|gb|EJD75750.1| DEAD box polypeptide 27 [Loa loa]
Length = 684
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 31/229 (13%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
NAE SF ++ L ++KA+ G P+ IQ IP L G+ + S +G+G+T A+
Sbjct: 136 NAETAISFDQMNLSRALLKAITACGFTEPTRIQSTCIPLALAGRDLCACSATGTGKTAAF 195
Query: 196 LLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
+LP+++ ++L R P + R +VL T E A Q F +++
Sbjct: 196 MLPVLE-----------------RLLYR-----PQQKAMTRVVVLTPTRELAIQTFQVSR 233
Query: 256 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVL 314
+S R+D + GG+ K E ++IATP ++ H+ + N S ++ +VL
Sbjct: 234 QLSQFMRIDICLCAGGLDLKTQEAALRQRPDIVIATPGRLIDHLHNAPNFSLVNVEILVL 293
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
DEAD + D F ++ +I++ Q QT+L +A + + + E
Sbjct: 294 DEADRMLDEAFADQMKEIIHLC--------AQNRQTMLFSATMTDQVEE 334
>gi|406973607|gb|EKD96982.1| hypothetical protein ACD_23C01154G0002, partial [uncultured
bacterium]
Length = 475
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 21/197 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +L L + +AV +MG + IQ IP VL G+ V+ ++ +G+G+T A+ LPL+Q
Sbjct: 2 AFAQLQLADPLARAVAEMGYETMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFALPLMQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALL-PMKPMHP-RAIVLCTTEESADQGFHMAKFISH 259
+ML+ + A P + HP RA+VL T E A Q +
Sbjct: 62 -----------------RMLKHENASTSPAR--HPVRALVLLPTRELAVQVAEQVELYGK 102
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEAD
Sbjct: 103 YTNLRSAVVFGGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADR 162
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF P++ +IL+ L
Sbjct: 163 MLDIGFLPDLQRILSYL 179
>gi|198434305|ref|XP_002132137.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 56
[Ciona intestinalis]
Length = 570
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 32/222 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F E+GL ++KA+ + G P+ IQ IP +NGK ++ + +GSG+T AY +P++Q
Sbjct: 14 FHEMGLDDRILKAIAEAGWASPTLIQEKAIPLAINGKDILSRARTGSGKTAAYAVPIIQ- 72
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHCA 261
QL+ + + DE R +VL + E + Q ++M + + C+
Sbjct: 73 ----------QLLNLKNTTQEDEY-----EQEVRGLVLVPSRELSGQAYNMMQQLTTSCS 117
Query: 262 R----LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
R +D SME K L V +++ TPS VL H+ N++ +R++VLDEA
Sbjct: 118 RDVTSIDVSMEGDPNLLKPLLAVKP---DIVVGTPSRVLAHVRAGNLTLASVRWLVLDEA 174
Query: 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D LF G+ ++ +L L S +Q+ L++A ++E
Sbjct: 175 DLLFSFGYEDDLKILLKHLPSS--------YQSFLMSATLSE 208
>gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
J2315]
gi|444365702|ref|ZP_21165823.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
J2315]
gi|443605756|gb|ELT73582.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 514
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E++ A++ G P+ +Q IP + G+ +++SS +GSG+T A++LP ++
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 202 VYSQLDEEHHLQLVGITQMLRRD-EALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISH 259
++QL + Q + + D A P P +VL T E A Q A + H
Sbjct: 97 TFAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 215
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I++ D+ QT+L +A + +G S L++ ER
Sbjct: 216 RMLDMGFIEDIETIVDATPDTR--------QTMLFSATLDGKIGSLTSRLLKDPER 263
>gi|403251953|ref|ZP_10918268.1| DNA/RNA helicase, superfamily II [actinobacterium SCGC AAA027-L06]
gi|402914698|gb|EJX35706.1| DNA/RNA helicase, superfamily II [actinobacterium SCGC AAA027-L06]
Length = 432
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 133/271 (49%), Gaps = 40/271 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ELG+ +IK + G+ P IQ +P + GK ++ +GSG+TLA+ L L+
Sbjct: 2 SFKELGVNPALIKVLHAAGIEKPFPIQKATLPDAIAGKDILGRGQTGSGKTLAFGLALMS 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L G T PM P A++L T E A Q + +S
Sbjct: 62 -----------RLAGKTAA-----------PMRPLALILSPTRELAMQISDVIAPLSRTV 99
Query: 262 RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L+S + GG+S SK ++ + A + +++ATP ++ I+ +++ DDI VLDEAD +
Sbjct: 100 NLNSQVVAGGLSYSKQIQALKRA-VPIVVATPGRLIDLIQKKHIKLDDIEITVLDEADQM 158
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME-------CLE 373
D GF P++ +IL+ K G Q +L +A + + + + ++ E
Sbjct: 159 ADMGFLPDVKRILDLTK--------PGGQRMLFSATLDKDVDSLVKKYLKNPVTHSLANE 210
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKK 404
+ AG +T +L ++QA DL SQ A +K
Sbjct: 211 KSTAGNMTHHVLILEQAH-KDLITSQIAARK 240
>gi|301111750|ref|XP_002904954.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095284|gb|EEY53336.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 847
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 117/235 (49%), Gaps = 39/235 (16%)
Query: 131 KSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSG 190
KS+G A V FQ LGL + + V MG VP+ IQ +P VL+GK V + +GSG
Sbjct: 27 KSNGKGAGV-GGFQHLGLSPLVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSG 85
Query: 191 RTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 250
+T A+L+P+V+ +L E H +G+ RA+VL T E A Q
Sbjct: 86 KTAAFLVPMVE---KLKE--HSTKIGV------------------RAVVLSPTRELAVQT 122
Query: 251 FHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPS---EVLQHIEDRNVSC 306
AK +S L ++ GG + E +++ P +L+ATP +LQ I D N+
Sbjct: 123 LRFAKQLSKFTSLKMALIVGGEGMDQQFEAIASNP-DVLVATPGRLMHLLQEIPDFNLKA 181
Query: 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+ YVV DEAD +F+ GF ++ +IL + S QT+L +A + + L
Sbjct: 182 --VEYVVFDEADRIFEMGFAEQLQEILKNMPTSR--------QTLLFSATLPKAL 226
>gi|383784621|ref|YP_005469191.1| DEAD/DEAH box helicase [Leptospirillum ferrooxidans C2-3]
gi|383083534|dbj|BAM07061.1| putative DEAD/DEAH box helicase domain protein [Leptospirillum
ferrooxidans C2-3]
Length = 437
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 106/203 (52%), Gaps = 33/203 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+++AV + G P+ IQ IPAVL+G+ ++ + +G+G+T + LP+++
Sbjct: 2 SFSALGLSEEIVRAVTERGYLTPTPIQVAAIPAVLSGRDLMAGAQTGTGKTAGFTLPIIE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ--------GFHM 253
+ S+ +++ + RR +P+K A++L T E A Q G HM
Sbjct: 62 ILSRKNDK--------KEKGRR----VPVK-----ALILTPTRELAAQVEESVVEYGKHM 104
Query: 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+L S++ GGVS + +L+ATP +L H++ R + + +V
Sbjct: 105 --------KLSSTVIFGGVSINPQIQKLRTGVDILVATPGRLLDHVQQRTLDLSHVEILV 156
Query: 314 LDEADTLFDRGFGPEISKILNPL 336
LDEAD + D GF +I KI++ L
Sbjct: 157 LDEADRMLDMGFIRDIRKIISLL 179
>gi|170701603|ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170133486|gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 571
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 33/206 (16%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 83 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 142
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 143 IIQ------------------------RLLPQASTSASPARHPVRALILTPTRELADQVA 178
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H + L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 179 ANVHAYAKHTS-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 237
Query: 311 YVVLDEADTLFDRGFGPEISKILNPL 336
+VLDEAD + D GF P++ +ILN L
Sbjct: 238 ILVLDEADRMLDMGFLPDLQRILNLL 263
>gi|134093720|ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
gi|133737623|emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
Length = 502
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 19/193 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ+ GL E++KA+ G P+ IQ IP VL G V+ ++ +G+G+T + LP++Q+
Sbjct: 25 FQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSLPIIQL 84
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
M + + P + HP RA++L T E ADQ K S
Sbjct: 85 L----------------MAHANSSASPAR--HPVRALILTPTRELADQVAANVKAYSRHT 126
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GG+ + ++IATP +L H++ + ++ + +V+DEAD +
Sbjct: 127 PLRSLVVFGGMDMTPQTAALRGGVEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRML 186
Query: 322 DRGFGPEISKILN 334
D GF P++ +I+N
Sbjct: 187 DMGFLPDLQRIIN 199
>gi|171318169|ref|ZP_02907335.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171096637|gb|EDT41526.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 571
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 33/206 (16%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 83 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 142
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-G 250
++Q LLP HP RA++L T E ADQ
Sbjct: 143 IIQ------------------------RLLPQASTSASPARHPVRALILTPTRELADQVA 178
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
++ + H + L S++ GGV + +LIATP +L H++ + + ++
Sbjct: 179 ANVHAYAKHTS-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQ 237
Query: 311 YVVLDEADTLFDRGFGPEISKILNPL 336
+VLDEAD + D GF P++ +ILN L
Sbjct: 238 ILVLDEADRMLDMGFLPDLQRILNLL 263
>gi|343523874|ref|ZP_08760835.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
gi|343400091|gb|EGV12612.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 175 str. F0384]
Length = 522
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
AS R S + A ++F +LG+ +++ ++ G P IQ +P L G+ V+
Sbjct: 8 ASHRFASGKTPAAGEATFADLGVDSDLAADLDARGFTTPFPIQAATLPDTLAGRDVLGRG 67
Query: 186 GSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+GSG+TLA+ LPLVQ +Q D+ +P HP +VL T E
Sbjct: 68 RTGSGKTLAFSLPLVQRLAQQDKA---------------------RPGHPIGLVLAPTRE 106
Query: 246 SADQGFHMAKFISHCAR---LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
A +A+ I AR +D + GGVS+K E A + +++A P +L +
Sbjct: 107 LA---LQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGRLLDLMGQG 163
Query: 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
VS D++ VLDEAD + D GF P + +IL
Sbjct: 164 LVSLDEVEITVLDEADHMADLGFLPNVRRILR 195
>gi|167855886|ref|ZP_02478636.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
gi|167852974|gb|EDS24238.1| ATP-dependent RNA helicase SrmB [Haemophilus parasuis 29755]
Length = 441
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L E+++A+EK G P+ IQ IP + G+ V+ S+ +G+G+T A+LLP +Q
Sbjct: 6 TFEELDLSPELLQALEKKGYKRPTAIQQETIPPAMEGRDVLGSAPTGTGKTAAFLLPALQ 65
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
HL RR KP PR ++L T E A Q A+ ++
Sbjct: 66 ---------HL-----LDHPRR-------KPGPPRILILTPTRELAMQVAEQAEELAQFT 104
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L + GGV+ + +V N +++ATP + Q+I++ N C + ++ DEAD +
Sbjct: 105 NLKIATITGGVAYQNHGEVFNTNQDLVVATPGRLQQYIQEENFDCRSVEILIFDEADRML 164
Query: 322 DRGFGPEISKI 332
GFG + KI
Sbjct: 165 QMGFGQDAEKI 175
>gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 520
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 15/196 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S G R A LP+ RA+VL T E A Q +
Sbjct: 62 LLSDSAAR------GANGAQR--PARLPV-----RALVLTPTRELAAQVEESVRNYGKYL 108
Query: 262 RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
RL S + GGV + +E + + +++ATP +L H+ R + + +VLDEAD +
Sbjct: 109 RLRSMVMFGGVGINPQIEQLKRG-VEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRM 167
Query: 321 FDRGFGPEISKILNPL 336
D GF +I KILN L
Sbjct: 168 LDMGFIHDIRKILNVL 183
>gi|195490088|ref|XP_002092996.1| GE21030 [Drosophila yakuba]
gi|194179097|gb|EDW92708.1| GE21030 [Drosophila yakuba]
Length = 827
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 31/221 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFE- 99
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RR+ P K RA++L T E A Q + K +
Sbjct: 100 ----------------KLQRRE----PTKGA--RALILSPTRELAVQTYKFIKELGRFME 137
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + + GG S + + +++ATP L + ++ + I YVV DEAD LF+
Sbjct: 138 LKTILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFE 197
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
GFG ++++ L+ L S QT++ +A + ++L E
Sbjct: 198 MGFGEQLNETLHRLPSSR--------QTVMFSATLPKLLVE 230
>gi|34496458|ref|NP_900673.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34102311|gb|AAQ58677.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 441
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 112/218 (51%), Gaps = 29/218 (13%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F ELGL E+++A+++ G P+ IQ IP VL+G+ ++ ++ +G+G+T A++LP+++
Sbjct: 3 FSELGLSPEILRAIDEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISHC 260
+ + ++ P MHP RA+VL T E ADQ G ++ + +
Sbjct: 63 LKKFA----------------NTSVSPA--MHPIRALVLSPTRELADQIGVNVQTYTKYL 104
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L ++ GGV+ + +LIATP +L HI+ + V + + +VLDE D +
Sbjct: 105 P-LRATTVFGGVNMDPQTQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRM 163
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
D GF +I KI+ L QT+L +A A
Sbjct: 164 LDMGFIQDIRKIMGMLPKER--------QTLLFSATFA 193
>gi|386334504|ref|YP_006030675.1| ATP-dependent rna helicase protein [Ralstonia solanacearum Po82]
gi|334196954|gb|AEG70139.1| ATP-dependent rna helicase protein [Ralstonia solanacearum Po82]
Length = 674
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 20/215 (9%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
+A ER + + + SF ELGL ++++AV ++G P+ IQ IPA+L G ++
Sbjct: 112 LAHERMRGTRRSNRFSMSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAG 171
Query: 185 SGSGSGRTLAYLLPLVQVYS--QLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLC 241
+ +G+G+T + LPL+ S Q ++ H P +P RA+VL
Sbjct: 172 AQTGTGKTAGFTLPLLHRLSAAQPNKVH-----------------TPHGMRYPIRALVLT 214
Query: 242 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301
T E A Q + L S + GGV D + +++ATP +L H+
Sbjct: 215 PTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQ 274
Query: 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
R + I +VLDEAD + D GF +I KILN L
Sbjct: 275 RTIDLSHIELLVLDEADRMLDMGFIHDIRKILNIL 309
>gi|289668397|ref|ZP_06489472.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. musacearum
NCPPB 4381]
Length = 460
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 28/219 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +++A+ + G P+ IQ IP VL ++ + +G+G+T A+ LPL+Q
Sbjct: 2 SFESLGLAPFLLRALAEQGYETPTAIQQQAIPLVLADHDLLAGAQTGTGKTAAFGLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
HL G + P+ P PRA++L T E A Q + S
Sbjct: 62 ---------HL---GTSPQ--------PVNGPRKPRALILTPTRELATQVHDSLRGYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S++ GGV D + +LIA P ++ HIE R+V I ++LDEAD +
Sbjct: 102 LRIPSAVIYGGVGMGNQLDALRRGVDLLIACPGRLIDHIERRSVDLSGIEVLILDEADRM 161
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D GF P I +IL L Q QT+L +A E
Sbjct: 162 LDMGFLPSIKRILTKLPR-------QDRQTLLFSATFEE 193
>gi|209694151|ref|YP_002262079.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
gi|208008102|emb|CAQ78243.1| ATP-dependent RNA helicase SrmB [Aliivibrio salmonicida LFI1238]
Length = 416
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 29/198 (14%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E++G P+++Q + IP L GK ++ S+ +G+G++ A+LLP
Sbjct: 1 MIKTFADLDLSPNLLRALEEIGYQRPTQVQAMAIPEALEGKDILASAPTGTGKSAAFLLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE----SADQGFHMA 254
+Q LD+ RRD P R ++L T E AD+ +A
Sbjct: 61 ALQ---HLDD-----------FPRRD-------PGPARVLILTPTRELAIQVADEARELA 99
Query: 255 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
K+ H GG+S + D+ +++ATP ++++IE C I ++L
Sbjct: 100 KYTHH----KVFTITGGISYQEHADILARTQDIVVATPGRLMEYIEAERFDCRAIETLIL 155
Query: 315 DEADTLFDRGFGPEISKI 332
DEAD + D GFGP + ++
Sbjct: 156 DEADRMLDMGFGPVVDRL 173
>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 479
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTYYAEHR----GAKRAVR--------------ALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + ++ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|170046392|ref|XP_001850751.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
gi|167869172|gb|EDS32555.1| ATP-dependent RNA helicase vasa [Culex quinquefasciatus]
Length = 641
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 28/234 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF E GL+ ++ V K G P+ IQ IP +++ + ++ + +GSG+T A+LLP+
Sbjct: 216 ITSFNESGLRDYLLTNVRKSGYLKPTPIQKYAIPIIMDKRDLMACAQTGSGKTAAFLLPI 275
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +++ M P +P +V+ T E A Q A+ +
Sbjct: 276 INTLLNDNDD--------------------MTPGNPFVVVVAPTRELALQISEEARKFAR 315
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GG +++ D N +L+ATP +L ++ + V+ D +++VVLDEAD
Sbjct: 316 GTILKVVVAYGGTATRHQIDNVNNGCHILVATPGRLLDFVDRQAVTFDRVKFVVLDEADR 375
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA----IAEMLGEQLSSLM 369
+ D GF P + K++N +KS + QT++ +A I E+ G+ L++ +
Sbjct: 376 MLDMGFMPAVEKMMN---HETMKSKEER-QTLMFSATFPGQIQELAGQFLNNYI 425
>gi|71145379|gb|AAZ25852.1| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
Length = 430
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 101/191 (52%), Gaps = 21/191 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ L +E++ ++ K+G P+ IQ + IP + GK V+ S+ +G+G+T A+LLP+ Q
Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQ- 73
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL T KP PR ++L T E A Q ++ ++ +
Sbjct: 74 --------HLLDYPRT------------KPGFPRVLILTPTRELAIQIGEDSEQLTELTK 113
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ + + GGV+ + D+ + +L+ATP +L++IE+ +I +VLDEAD + D
Sbjct: 114 IKTGVITGGVNYGSHADILTSTTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLD 173
Query: 323 RGFGPEISKIL 333
GF I++I+
Sbjct: 174 LGFSETINRIV 184
>gi|83746106|ref|ZP_00943161.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
gi|83727289|gb|EAP74412.1| ATP-dependent RNA helicase RhlE [Ralstonia solanacearum UW551]
Length = 603
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 20/215 (9%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
+A ER + + + SF ELGL ++++AV ++G P+ IQ IPA+L G ++
Sbjct: 43 LAHERMRGTRRSNRFSMSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAG 102
Query: 185 SGSGSGRTLAYLLPLVQVYS--QLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLC 241
+ +G+G+T + LPL+ S Q ++ H P +P RA+VL
Sbjct: 103 AQTGTGKTAGFTLPLLHRLSAAQPNKVH-----------------TPHGMRYPIRALVLT 145
Query: 242 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301
T E A Q + L S + GGV D + +++ATP +L H+
Sbjct: 146 PTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQ 205
Query: 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
R + I +VLDEAD + D GF +I KILN L
Sbjct: 206 RTIDLSHIELLVLDEADRMLDMGFIHDIRKILNIL 240
>gi|359299191|ref|ZP_09185030.1| ATP-dependent RNA helicase SrmB [Haemophilus [parainfluenzae] CCUG
13788]
gi|402306790|ref|ZP_10825827.1| DEAD/DEAH box helicase [Haemophilus sputorum HK 2154]
gi|400374139|gb|EJP27062.1| DEAD/DEAH box helicase [Haemophilus sputorum HK 2154]
Length = 445
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+EL L +++KA+ + G P+ +Q IP L+G+ ++ S+ +G+G+T A+LLP
Sbjct: 7 ILTFEELDLSPQLLKALAQKGYKRPTSVQEQTIPYALDGRDLLGSAPTGTGKTAAFLLPA 66
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ +
Sbjct: 67 IQ---------HL-----LDYPRR-------KPGAPRILILTPTRELAMQVAEEAQSFAQ 105
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L + GGV+ + +V N+ +++ATP ++Q+I++ N C + ++ DEAD
Sbjct: 106 FTKLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENFDCRAVEILIFDEADR 165
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 166 MLQMGFGQDAEKI 178
>gi|121593545|ref|YP_985441.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
JS42]
gi|120605625|gb|ABM41365.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
Length = 484
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
+ L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q
Sbjct: 5 YSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ- 63
Query: 203 YSQLDEEHHLQLVGITQMLRR-DEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
++L+ + + P + HP RA+VL T E ADQ +
Sbjct: 64 ----------------RLLKHENSSASPAR--HPVRALVLLPTRELADQVAQQIALYAKY 105
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEAD +
Sbjct: 106 TKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRM 165
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +IL+ L
Sbjct: 166 LDIGFLPDLQRILSYL 181
>gi|163746995|ref|ZP_02154351.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
HEL-45]
gi|161379556|gb|EDQ03969.1| ATP-dependent RNA helicase, putative [Oceanibulbus indolifex
HEL-45]
Length = 529
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 22/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L A+++KAV + G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFTDLNLNAKVLKAVVEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q S
Sbjct: 61 LS------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYSK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + D++ +V+DEAD
Sbjct: 99 HLKLTKALLIGGVSFKEQDKLIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADR 158
Query: 320 LFDRGFGPEISKIL 333
+ D GF P+I +I
Sbjct: 159 MLDMGFIPDIERIF 172
>gi|17232210|ref|NP_488758.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
gi|17133855|dbj|BAB76417.1| ATP-dependent RNA helicase [Nostoc sp. PCC 7120]
Length = 426
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 100/195 (51%), Gaps = 17/195 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I AV ++G P+ IQ IPAVL+G+ ++ + +G+G+T ++ LPL+
Sbjct: 2 SFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLLH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ SQ + A P+ RA++L T E A Q +
Sbjct: 62 LLSQ------------DSLKSASNASSPI-----RALILTPTRELAAQVESSVRDYGKYL 104
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L+S + GGVS + + +L+ATP +L H++ V+ I +VLDEAD +
Sbjct: 105 KLNSMVMFGGVSINPQKQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRML 164
Query: 322 DRGFGPEISKILNPL 336
D GF +I +IL+ L
Sbjct: 165 DMGFIRDIRRILSLL 179
>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 472
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTYYAEHR----GAKRAVR--------------ALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + ++ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|374335360|ref|YP_005092047.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
gi|372985047|gb|AEY01297.1| DEAD-box ATP dependent DNA helicase [Oceanimonas sp. GK1]
Length = 460
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 105/196 (53%), Gaps = 22/196 (11%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
A+ +F++ GL +++A++ GL P++IQ IP V+ G ++ SS +GSG+TLAYL
Sbjct: 2 AQNNDTFRDFGLDTRLVRALDHQGLNTPTDIQLKAIPVVMAGFDLLASSKTGSGKTLAYL 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LP +Q +L+ + +RD PRA++L T E A Q + +
Sbjct: 62 LPALQ-----------RLMKTRALSKRD----------PRALILAPTRELARQVYAQLRS 100
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
++ + + + G + L+ + P +++ATP + H++ R++ + + ++LDE
Sbjct: 101 LAGNSVNIALLLGGENFNDQLKSLRRQP-DVIVATPGRLANHLDARSLMLNGLELLILDE 159
Query: 317 ADTLFDRGFGPEISKI 332
AD + D GF P++ +I
Sbjct: 160 ADRMLDLGFAPQLERI 175
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 103/203 (50%), Gaps = 33/203 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF GL A +++A+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++Q
Sbjct: 43 SFDGFGLAAPILQAIGEQGYTKPTPIQAQAIPIVLAGRDVMGAAQTGTGKTASFSLPIIQ 102
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFHM 253
LLP+ HP RA++L T E ADQ ++
Sbjct: 103 ------------------------RLLPLASTSASPARHPVRALILTPTRELADQVAANV 138
Query: 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ H A L S++ GGV + +LIATP +L H++ ++ S ++ +V
Sbjct: 139 HAYAKHTA-LRSAVVFGGVDMNPQTAELRRGVEILIATPGRLLDHVQQKSTSLAQVQMLV 197
Query: 314 LDEADTLFDRGFGPEISKILNPL 336
LDEAD + D GF P++ +ILN L
Sbjct: 198 LDEADRMLDMGFLPDLQRILNLL 220
>gi|222110266|ref|YP_002552530.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
TPSY]
gi|221729710|gb|ACM32530.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
Length = 484
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
+ L L + +AV +MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q
Sbjct: 5 YSTLALAEPLKRAVAEMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ- 63
Query: 203 YSQLDEEHHLQLVGITQMLRR-DEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
++L+ + + P + HP RA+VL T E ADQ +
Sbjct: 64 ----------------RLLKHENSSASPAR--HPVRALVLLPTRELADQVAQQIALYAKY 105
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEAD +
Sbjct: 106 TKLRSTVVFGGMDMKPQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRM 165
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +IL+ L
Sbjct: 166 LDIGFLPDLQRILSYL 181
>gi|78067127|ref|YP_369896.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967872|gb|ABB09252.1| DEAD/DEAH box helicase-like protein [Burkholderia sp. 383]
Length = 527
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 107/200 (53%), Gaps = 21/200 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 31 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 91 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 132
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 133 AKHTP-LRSAVVFGGVDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDE 191
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ +ILN L
Sbjct: 192 ADRMLDMGFLPDLQRILNLL 211
>gi|387121338|ref|YP_006287221.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415759167|ref|ZP_11481695.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416046168|ref|ZP_11575626.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|429732438|ref|ZP_19267051.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans Y4]
gi|347994809|gb|EGY36054.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348655113|gb|EGY70595.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875830|gb|AFI87389.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429156247|gb|EKX98883.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans Y4]
Length = 443
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAIQ- 65
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q AK ++ +
Sbjct: 66 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTK 105
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 106 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQ 165
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 166 MGFGQDAEKI 175
>gi|73540223|ref|YP_294743.1| helicase [Ralstonia eutropha JMP134]
gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 506
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP--RAIVLCTTEESADQGFHMAKFISH 259
+ S+ P + P RA+VL T E A Q +
Sbjct: 62 LLSES---------------------APQRQGKPAVRALVLTPTRELAAQVEESVRNYGK 100
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
RL S + GGV + + +++ATP +L H+ R + + +VLDEAD
Sbjct: 101 YVRLRSMVMFGGVGINPQIEQLRRGVEIVVATPGRLLDHVSQRTIDLSSVELLVLDEADR 160
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF +I KILN L
Sbjct: 161 MLDMGFIHDIRKILNVL 177
>gi|302766257|ref|XP_002966549.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
gi|300165969|gb|EFJ32576.1| hypothetical protein SELMODRAFT_230807 [Selaginella moellendorffii]
Length = 581
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 111/204 (54%), Gaps = 23/204 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+++GL +++ +++ G+ P+ IQ G+PA+L+G+ ++ + +GSG+TLA++LPL
Sbjct: 142 IRSFKDMGLPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPL 201
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFI- 257
+ + L EE +L G P ++LC + E A Q F + +F+
Sbjct: 202 IML--ALKEEERSRLKGGE---------------GPVGLILCPSRELAKQTFDVIEEFVS 244
Query: 258 ----SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
S C L + + GG ++ + + +++ATP + +E + ++ + +Y+
Sbjct: 245 MVNSSRCCHLRAMLCIGGTGMRSQLEAIRRGVHIVVATPGRLNDMLEKKKMNLERCKYLT 304
Query: 314 LDEADTLFDRGFGPEISKILNPLK 337
LDEAD L D GF +I K+++ LK
Sbjct: 305 LDEADRLCDSGFEDDIRKVMDHLK 328
>gi|416067076|ref|ZP_11582167.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348002340|gb|EGY43039.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
Length = 443
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAIQ- 65
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q AK ++ +
Sbjct: 66 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTK 105
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 106 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQ 165
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 166 MGFGQDAEKI 175
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 105/196 (53%), Gaps = 21/196 (10%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 33 ANFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 92
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFIS 258
Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 93 QRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAYAK 134
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H L S++ GGV + +LIATP +L H++ + + ++ +VLDEAD
Sbjct: 135 HTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEAD 193
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P++ +ILN
Sbjct: 194 RMLDMGFLPDLQRILN 209
>gi|161407972|ref|YP_270752.2| ATP-dependent RNA helicase SrmB [Colwellia psychrerythraea 34H]
Length = 417
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 101/191 (52%), Gaps = 21/191 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ L +E++ ++ K+G P+ IQ + IP + GK V+ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQ- 60
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL T KP PR ++L T E A Q ++ ++ +
Sbjct: 61 --------HLLDYPRT------------KPGFPRVLILTPTRELAIQIGEDSEQLTELTK 100
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ + + GGV+ + D+ + +L+ATP +L++IE+ +I +VLDEAD + D
Sbjct: 101 IKTGVITGGVNYGSHADILTSTTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLD 160
Query: 323 RGFGPEISKIL 333
GF I++I+
Sbjct: 161 LGFSETINRIV 171
>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 480
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTYYAEHR----GAKRAVR--------------ALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + ++ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
19424]
gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
19424]
Length = 516
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 15/196 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ L E Q G + R + RA+VL T E A Q +
Sbjct: 62 L---LSETAARQAGGAQRGGR----------VAVRALVLTPTRELAAQVEESVRNYGKYL 108
Query: 262 RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
RL S + GGV + +E + + +++ATP +L H+ R + + +VLDEAD +
Sbjct: 109 RLRSMVMFGGVGINPQIEQLKRG-VEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRM 167
Query: 321 FDRGFGPEISKILNPL 336
D GF +I KILN L
Sbjct: 168 LDMGFIHDIRKILNVL 183
>gi|339324706|ref|YP_004684399.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338164863|gb|AEI75918.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 532
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 15/196 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S G R A LP+ RA+VL T E A Q +
Sbjct: 62 MLSDSAAR------GANGAQR--PARLPV-----RALVLTPTRELAAQVEESVRNYGKYL 108
Query: 262 RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
RL S + GGV + +E + + +++ATP +L H+ R + + +VLDEAD +
Sbjct: 109 RLRSMVMFGGVGINPQIEQLKRG-VEIVVATPGRLLDHVSQRTIDLSQVELLVLDEADRM 167
Query: 321 FDRGFGPEISKILNPL 336
D GF +I KILN L
Sbjct: 168 LDMGFIHDIRKILNVL 183
>gi|163750030|ref|ZP_02157274.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161330304|gb|EDQ01285.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 436
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 33/259 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F L L+ E+++ + +G P+ IQ IPA+L G+ ++ + +GSG+T A+ LP++
Sbjct: 12 GFSSLSLRPELLQVLTALGYSQPTPIQTQAIPAILAGQDIMAGAQTGSGKTAAFSLPILH 71
Query: 202 VYSQ----LDEEHHLQLVGITQMLRRDEALLPMKPMHP-----RAIVLCTTEESADQGFH 252
++ LDE++ + E+ P P RA+VL T E A Q H
Sbjct: 72 KLTEPLLRLDEKN------------QQESEAPSCSQVPAIRAIRALVLTPTRELALQ-VH 118
Query: 253 MAKFISHC--ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
F+ + +L S++ GGVS A + A + +L+ATP +L H+ ++S ++
Sbjct: 119 -GSFVKYAKLTQLKSALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGSMSLSELE 177
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
++V DEAD + D GF EI I+ L + QT+L +A E L SL+
Sbjct: 178 FLVFDEADRMLDMGFKDEIDAIVKQLPKTR--------QTLLFSATFDESLYGLSQSLLR 229
Query: 371 CLERDNAGKVTAMLLEMDQ 389
+R G+ A +E++Q
Sbjct: 230 DPKRIEVGERNAAAVEIEQ 248
>gi|421900031|ref|ZP_16330394.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
gi|206591237|emb|CAQ56849.1| atp-dependent rna helicase protein [Ralstonia solanacearum MolK2]
Length = 559
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 20/215 (9%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
+A ER + + + SF ELGL ++++AV ++G P+ IQ IPA+L G ++
Sbjct: 1 MAHERMRGTRRSNRFSMSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAG 60
Query: 185 SGSGSGRTLAYLLPLVQVYS--QLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLC 241
+ +G+G+T + LPL+ S Q ++ H P +P RA+VL
Sbjct: 61 AQTGTGKTAGFTLPLLHRLSAAQPNKVH-----------------TPHGMRYPIRALVLT 103
Query: 242 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301
T E A Q + L S + GGV D + +++ATP +L H+
Sbjct: 104 PTRELAAQVEESVRAYGKYLPLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQ 163
Query: 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
R + I +VLDEAD + D GF +I KILN L
Sbjct: 164 RTIDLSHIELLVLDEADRMLDMGFIHDIRKILNIL 198
>gi|158513663|sp|A2YV85.2|RH29_ORYSI RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
Length = 851
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 128/259 (49%), Gaps = 47/259 (18%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+KP P +P+++ AS+++ SG F+ +GL E+ + V G VP+ IQ
Sbjct: 26 EHKPPPGRPKRE--GEGASKKKAKSGG-------FESMGLCEEVYRGVRHKGYRVPTPIQ 76
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL 228
+P +L G + + +GSG+T A+L+P++ Q LRR +A
Sbjct: 77 RKAMPLILAGHDIAAMARTGSGKTAAFLVPMI------------------QRLRRHDAGA 118
Query: 229 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGM 287
+ RA++L T + A Q A+ + L S+ GG S ++ E+++ P +
Sbjct: 119 GI-----RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP-DI 172
Query: 288 LIATPSEVLQH---IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 344
+IATP ++ H +ED N+ + YVV DEAD+LF G ++ IL+ L D+
Sbjct: 173 IIATPGRLVHHLAEVEDLNLRT--VEYVVFDEADSLFSLGLIQQLHDILHKLSDTR---- 226
Query: 345 GQGFQTILVTAAIAEMLGE 363
QT+L +A + + L +
Sbjct: 227 ----QTLLFSATLPQALAD 241
>gi|418464061|ref|ZP_13035003.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359757402|gb|EHK91556.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 443
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQ- 65
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q AK ++ +
Sbjct: 66 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTK 105
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 106 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRMLQ 165
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 166 MGFGQDAEKI 175
>gi|423201022|ref|ZP_17187602.1| hypothetical protein HMPREF1167_01185 [Aeromonas veronii AER39]
gi|404618005|gb|EKB14926.1| hypothetical protein HMPREF1167_01185 [Aeromonas veronii AER39]
Length = 416
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 20/193 (10%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SF EL L + + + ++G P+ IQ IP +L G+ ++ + +G+G+T A++LPL+
Sbjct: 4 ASFAELALSPRLQQTLIELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLL 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+ QL+ QM + +P+ RA+VL T E A Q
Sbjct: 64 E-----------QLLAQPQMASQ-------RPI--RALVLVPTRELAVQVAESVARYGQG 103
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GGVS A + A + +LIATP +L H+ +S D +R++V DEAD +
Sbjct: 104 TGLTSTLVYGGVSIAAQVEALQAGVDILIATPGRLLDHLRQGALSLDSLRHLVFDEADRM 163
Query: 321 FDRGFGPEISKIL 333
D GF EI +L
Sbjct: 164 LDMGFMDEIKALL 176
>gi|416033315|ref|ZP_11573033.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347999150|gb|EGY40019.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
Length = 443
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMGGGDVLGSAPTGTGKTAAFLLPAIQ- 65
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q AK ++ +
Sbjct: 66 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTK 105
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 106 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQ 165
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 166 MGFGQDAEKI 175
>gi|218201153|gb|EEC83580.1| hypothetical protein OsI_29242 [Oryza sativa Indica Group]
Length = 883
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 128/259 (49%), Gaps = 47/259 (18%)
Query: 109 ENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQ 168
E+KP P +P+++ AS+++ SG F+ +GL E+ + V G VP+ IQ
Sbjct: 26 EHKPPPGRPKRE--GEGASKKKAKSGG-------FESMGLCEEVYRGVRHKGYRVPTPIQ 76
Query: 169 CVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL 228
+P +L G + + +GSG+T A+L+P++ Q LRR +A
Sbjct: 77 RKAMPLILAGHDIAAMARTGSGKTAAFLVPMI------------------QRLRRHDAGA 118
Query: 229 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGM 287
+ RA++L T + A Q A+ + L S+ GG S ++ E+++ P +
Sbjct: 119 GI-----RALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQFEELAENP-DI 172
Query: 288 LIATPSEVLQH---IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN 344
+IATP ++ H +ED N+ + YVV DEAD+LF G ++ IL+ L D+
Sbjct: 173 IIATPGRLVHHLAEVEDLNLRT--VEYVVFDEADSLFSLGLIQQLHDILHKLSDTR---- 226
Query: 345 GQGFQTILVTAAIAEMLGE 363
QT+L +A + + L +
Sbjct: 227 ----QTLLFSATLPQALAD 241
>gi|410904152|ref|XP_003965556.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Takifugu
rubripes]
Length = 863
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 38/248 (15%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K V + G VP+ IQ IP +
Sbjct: 56 EPDTREMVRAQNKKKKKSGG-------FQSMGLSYPVYKGVMRKGYKVPTPIQRKTIPVI 108
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235
L+GK VV + +GSG+T A+L+P+ + + P
Sbjct: 109 LDGKDVVAMARTGSGKTAAFLIPMFE-----------------------KLKAPQAQTGA 145
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q K + +L +++ GG S + ++I TP +
Sbjct: 146 RALILSPTRELALQTMKFTKELGKFTKLKTALILGGDSMDDQFAALHENPDIIIGTPGRL 205
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
+ I++ N+ ++ YVV DEAD LF+ GF ++ +I+ D+ QT+L +A
Sbjct: 206 MHVIKEMNLKLHNMEYVVFDEADRLFEMGFAEQLQEIIRRFPDTR--------QTLLFSA 257
Query: 356 AIAEMLGE 363
+ ++L E
Sbjct: 258 TLPKLLVE 265
>gi|300312872|ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075657|gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 487
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 19/195 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
L H + P + HP RA++L T E ADQ
Sbjct: 78 L--LQHASH--------------SASPAR--HPVRALILTPTRELADQVADNVAAYCRFT 119
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV + A + ++IATP +L H++ + V+ + +V+DEAD +
Sbjct: 120 PLRSTVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML 179
Query: 322 DRGFGPEISKILNPL 336
D GF P++ +I+N L
Sbjct: 180 DMGFLPDLQRIINLL 194
>gi|386283896|ref|ZP_10061119.1| dead/deah box helicase domain-containing protein [Sulfurovum sp.
AR]
gi|385344799|gb|EIF51512.1| dead/deah box helicase domain-containing protein [Sulfurovum sp.
AR]
Length = 445
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 118/241 (48%), Gaps = 34/241 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
S LGL +E++KA+ + G + IQ IPA+ G+ ++ + +G+G+T + LP++Q
Sbjct: 2 SLATLGLSSEILKALNEKGYESATPIQKALIPAMFTGRDIMAGAQTGTGKTAGFSLPILQ 61
Query: 202 VYSQ-LDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
S+ E H +P+A++L T E A Q +
Sbjct: 62 ELSKHFVEGQH----------------------YPKAVILVPTRELAKQVHASIEAYGKY 99
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S + GG + + + A I +++AT +L+HI +N++ + + Y+VLDEADT+
Sbjct: 100 LPLKSIVLYGGANLTSQANRLKAGIDIIVATSGRLLEHIGQKNINLESVAYLVLDEADTI 159
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA---EMLGEQLSSLMECLERDNA 377
D GF E+ KIL L D Q +L++A ++ + L EQ+ + +E D+
Sbjct: 160 LDMGFVHEVGKILQHLPDKR--------QNVLISATLSGSVKRLAEQILQKPKLIEVDSM 211
Query: 378 G 378
G
Sbjct: 212 G 212
>gi|416074740|ref|ZP_11584669.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444337976|ref|ZP_21151886.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348006743|gb|EGY47138.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443545920|gb|ELT55650.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 443
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQ- 65
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q AK ++ +
Sbjct: 66 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTK 105
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 106 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQ 165
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 166 MGFGQDAEKI 175
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 20/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL A +++AVE G P+ IQ IP VL GK ++ S+ +G+G+T + LP++
Sbjct: 2 SFETLGLAAGILRAVEDQGYSTPTPIQAKAIPLVLEGKDLMASAQTGTGKTAGFTLPIL- 60
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H L G Q R PRA+VL T E A Q
Sbjct: 61 --------HKLASAGRGQGRR-----------PPRALVLTPTRELAAQVAESIATYGKYV 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L +++ GGV + + +L+ATP +L H+ R V + +VLDEAD +
Sbjct: 102 PLRTAVVFGGVKIQPQIHKLQRGVDVLVATPGRLLDHVGQRTVDLSQVEVLVLDEADRML 161
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++LN L
Sbjct: 162 DMGFIHDIRRLLNEL 176
>gi|399992257|ref|YP_006572497.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis DSM
17395 = CIP 105210]
gi|400753930|ref|YP_006562298.1| ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis 2.10]
gi|398653083|gb|AFO87053.1| putative ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis
2.10]
gi|398656812|gb|AFO90778.1| putative ATP-dependent RNA helicase RhlE [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 516
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q +
Sbjct: 61 IT------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + D++ +V+DEAD
Sbjct: 99 HLKLTKALLIGGVSFKEQDTLIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I
Sbjct: 159 MLDMGFIPDIERIFG 173
>gi|152981130|ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281207|gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 513
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 19/204 (9%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
++ +A F++ GL E+++A+ G P+ IQ IP VL G V+ ++ +G+G+
Sbjct: 27 AAAVDAHPAVRFEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTGTGK 86
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQG 250
T + LP++Q+ M + + P + HP RA++L T E ADQ
Sbjct: 87 TAGFSLPIIQLL----------------MAHANSSASPAR--HPVRALILTPTRELADQV 128
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
K S L S + GGV + + ++IATP +L HI+ + ++ +
Sbjct: 129 ADNVKAYSRHTPLRSVVVFGGVDMAPQTAALRSGVEIVIATPGRLLDHIQQKTLNLSQTQ 188
Query: 311 YVVLDEADTLFDRGFGPEISKILN 334
+V+DEAD + D GF P++ +I+N
Sbjct: 189 ILVMDEADRMLDMGFLPDLQRIIN 212
>gi|444361124|ref|ZP_21162267.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
gi|443598510|gb|ELT66861.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
Length = 471
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E++ A++ G P+ +Q IP + G+ +++SS +GSG+T A++LP ++
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPVGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 202 VYSQLDEEHHLQLVGITQMLRRD-EALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISH 259
++QL + Q + + D A P P +VL T E A Q A + H
Sbjct: 97 TFAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 215
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I++ D+ QT+L +A + +G S L++ ER
Sbjct: 216 RMLDMGFIEDIETIVDATPDTR--------QTMLFSATLDGKIGSLTSRLLKDPER 263
>gi|383935744|ref|ZP_09989177.1| ATP-dependent RNA helicase RhlE [Rheinheimera nanhaiensis E407-8]
gi|383703063|dbj|GAB59268.1| ATP-dependent RNA helicase RhlE [Rheinheimera nanhaiensis E407-8]
Length = 444
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 20/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ SFQ L L A +++ +++ G P+ +Q IP +L GK V+ + +G+G+T A+ LP
Sbjct: 27 ILMSFQSLALAAPILRVLQEQGYDAPTPVQRQSIPVILAGKDVLAGAQTGTGKTAAFTLP 86
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
L+Q QML + + P R +VL T E A Q + + S
Sbjct: 87 LLQ-----------------QMLNAPKV---VAPNQVRVLVLTPTRELAQQVYDNVRKYS 126
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
S++ GGVS + D + + +L+ATP ++ H+ + V + +VLDEAD
Sbjct: 127 QYLECRSAVFYGGVSIRPQYDDAEQGLDILVATPGRLIDHLHQKTVDLSALEVLVLDEAD 186
Query: 319 TLFDRGFGPEISKILNPL 336
+ D GF +I +I+ L
Sbjct: 187 RMLDMGFIVDIKRIMAKL 204
>gi|194760837|ref|XP_001962639.1| GF14338 [Drosophila ananassae]
gi|190616336|gb|EDV31860.1| GF14338 [Drosophila ananassae]
Length = 1472
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 31/244 (12%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K SG N + + F++ GL+ + + V K G VP+ IQ V IP + G+ ++ + +GS
Sbjct: 1046 KVSGENVPKPIKKFEDAGLRTIVTENVIKSGYKVPTPIQKVSIPVINEGRDMMACAQTGS 1105
Query: 190 GRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
G+T A+LLP++ S+L E+ +G P+A+V+ T E A Q
Sbjct: 1106 GKTAAFLLPIL---SKLLEDPQDLEIG-----------------KPQAVVVSPTRELAIQ 1145
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
F+ A+ + L S+ GG S K + +LIATP +L ++ ++ +D
Sbjct: 1146 IFNEARKFGFESYLKISIVYGGTSFKHQNECITKGCHVLIATPGRLLDFVDRTFITFNDT 1205
Query: 310 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE----MLGEQL 365
R+VVLDEAD + D GF + KI+ ++S QT++ +A E + GE L
Sbjct: 1206 RFVVLDEADRMLDMGFSESMRKIMT---HRTMRSE---HQTLMFSATFPEEIQRLAGEFL 1259
Query: 366 SSLM 369
++ +
Sbjct: 1260 NNYV 1263
>gi|422337325|ref|ZP_16418296.1| ATP-dependent RNA helicase srmB [Aggregatibacter aphrophilus F0387]
gi|353345352|gb|EHB89647.1| ATP-dependent RNA helicase srmB [Aggregatibacter aphrophilus F0387]
Length = 441
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F + L E++ A++K G P+ IQ +PA ++G+ V+ S+ +G+G+T A+LLP
Sbjct: 4 LTQFADFDLAPELLNAIQKKGYQRPTAIQQETLPAAMDGEDVLGSAPTGTGKTAAFLLPA 63
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 64 IQ---------HL-----LDYPRR-------KPGAPRVLILTPTRELAMQVAEQAEELAC 102
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 103 FTKLSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADR 162
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 163 MLQMGFGQDAEKI 175
>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 477
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 20/206 (9%)
Query: 132 SSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
S+ +AE ++ F + GL ++K++ + G P+ IQ IP V G+ V+ ++ +G+G+
Sbjct: 7 SAAPSAEALT-FADFGLHPLLLKSIAETGYTSPTPIQAQAIPVVAEGRDVMGAAQTGTGK 65
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQG 250
T A+ LP++ H L M + + P + HP RA++L T E ADQ
Sbjct: 66 TAAFTLPIL---------HRL-------MPLANSSASPAR--HPVRALILTPTRELADQV 107
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
+ K S L S++ GGV ++ +L+ATP +L H+E +NV+ +
Sbjct: 108 YENVKRYSLHTPLRSAVVFGGVDIGPQKEALRQGCEVLVATPGRLLDHVEQKNVNLSQVG 167
Query: 311 YVVLDEADTLFDRGFGPEISKILNPL 336
+VLDEAD + D GF P++ +I+ L
Sbjct: 168 ILVLDEADRMLDMGFLPDLERIIRLL 193
>gi|89053691|ref|YP_509142.1| DEAD/DEAH box helicase [Jannaschia sp. CCS1]
gi|88863240|gb|ABD54117.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
Length = 644
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F +L L ++ KA+ + G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 10 MTTFADLDLNPKVQKAIVEAGYESPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPM 69
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ ML R A M PR++VLC T E A Q +
Sbjct: 70 IT------------------MLARGRARARM----PRSLVLCPTRELAAQVAENFDIYAK 107
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K E + + +LIATP +L H E + +D++ +V+DEAD
Sbjct: 108 HVKLTKALLIGGVSFKEQEQAIDKGVDVLIATPGRLLDHFERGKLILNDVKVMVVDEADR 167
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I
Sbjct: 168 MLDMGFIPDIERIFG 182
>gi|378823723|ref|ZP_09846322.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
gi|378597462|gb|EHY30751.1| putative ATP-dependent RNA helicase RhlE [Sutterella parvirubra YIT
11816]
Length = 639
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF+ GL ++ A+ +MG P+ IQ IP VL G V+ ++ +G+G+T + LPL
Sbjct: 1 MTSFESFGLDPRILSAIARMGYSEPTPIQTQAIPVVLKGGDVMGAAQTGTGKTAGFGLPL 60
Query: 200 VQVYSQLDEEHHLQLVGITQML-RRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFI 257
+ ++L + + ++ P + HP RA++L T E ADQ
Sbjct: 61 -----------------LARILPKANTSMSPAR--HPVRALILTPTRELADQVSDNLTAY 101
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ L + GGV + D+ I +L ATP +L H+ ++V+ + VVLDEA
Sbjct: 102 AADTPLRVGVVYGGVDIRPQADMLRRGIEVLTATPGRLLDHVAQKSVNLSQVEIVVLDEA 161
Query: 318 DTLFDRGFGPEISKILN 334
D + D GF P+IS+IL
Sbjct: 162 DRMLDMGFLPDISRILQ 178
>gi|261866893|ref|YP_003254815.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365966708|ref|YP_004948270.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416090463|ref|ZP_11588124.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444349527|ref|ZP_21156943.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|261412225|gb|ACX81596.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348009152|gb|EGY49333.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365745621|gb|AEW76526.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443544419|gb|ELT54409.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 443
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQ- 65
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q AK ++ +
Sbjct: 66 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTK 105
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 106 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQ 165
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 166 MGFGQDAEKI 175
>gi|319763758|ref|YP_004127695.1| dead/deah box helicase domain-containing protein [Alicycliphilus
denitrificans BC]
gi|330823978|ref|YP_004387281.1| DEAD/DEAH box helicase [Alicycliphilus denitrificans K601]
gi|317118319|gb|ADV00808.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
BC]
gi|329309350|gb|AEB83765.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
K601]
Length = 480
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
+ L L + +AV MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q
Sbjct: 5 YSTLALAEPLKRAVADMGYENMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ- 63
Query: 203 YSQLDEEHHLQLVGITQMLRR-DEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
++L+ + + P + HP RA+VL T E ADQ +
Sbjct: 64 ----------------RLLKHENSSASPAR--HPVRALVLLPTRELADQVAQQIAMYAKY 105
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+L S++ GG+ K + +L+ATP +L HIE +N + + YVVLDEAD +
Sbjct: 106 TKLRSTVVFGGMDMKPQTAELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRM 165
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +IL+ L
Sbjct: 166 LDIGFLPDLQRILSYL 181
>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 480
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTYYAEHR----GAKRAVR--------------ALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + ++ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 454
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 29/217 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L ++KAV G P+ IQ IP V+ G ++ ++ +G+G+T A++LP +Q
Sbjct: 2 TFEELNLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPALQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S + +P K PR +VL T E A Q A+ A
Sbjct: 62 RLST-------------------PSSVPGK--GPRVLVLTPTRELAGQCIDAARSYGRGA 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
RL GG+ + + +AP+ +++ATP +L H+E +++ + + +VLDEAD +
Sbjct: 101 RLRCGSILGGMPYREQLRLLSAPVDLIVATPGRLLDHLERGSIALNRLEMLVLDEADRML 160
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
D GF ++ KI++ + Q QT++ TA +
Sbjct: 161 DMGFSEDMEKIVS--------AAPQERQTLMFTATMG 189
>gi|153207356|ref|ZP_01946093.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161830442|ref|YP_001596593.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165918485|ref|ZP_02218571.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
gi|120576665|gb|EAX33289.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii 'MSU
Goat Q177']
gi|161762309|gb|ABX77951.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA
331]
gi|165917853|gb|EDR36457.1| putative ATP-dependent RNA helicase rhlE [Coxiella burnetii Q321]
Length = 411
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 32/255 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++A+ + G P+ +Q IP +L + V++++ +G+G+T + LPL+Q
Sbjct: 2 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L L+R KP+ RA++L T E A Q F +
Sbjct: 62 -----------RLFVSRPPLQRSA-----KPV-IRALILTPTRELAVQVFECVRAYGKYL 104
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L +++ +GGVS K + + +L+ATP +L + ++ + + VLDEAD +
Sbjct: 105 PLKATVVHGGVSIKPQINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRML 164
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA----IAEMLGEQLSS--LMECLERD 375
D GF P+I +IL L +S Q +L +A I E+ + L S L+E R+
Sbjct: 165 DMGFLPDIRRILKLLPESR--------QNLLFSATFSKEIKELTDKLLHSPALIEVARRN 216
Query: 376 N-AGKVTAMLLEMDQ 389
A ++T ++ +D+
Sbjct: 217 TAAARITHVVHPVDR 231
>gi|449449653|ref|XP_004142579.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Cucumis sativus]
Length = 789
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 34/223 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ LGL A + + +++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P+++
Sbjct: 31 FESLGLSANVFRGIKRKGYRVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLER 90
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
Q H G+ RA++L T + A Q K +
Sbjct: 91 LKQ-----HEPQGGV------------------RALILSPTRDLALQTLKFTKELGKFTD 127
Query: 263 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTL 320
L S+ GG S + E+++ +P ++IATP ++ H+ E +++ + YVV DEAD L
Sbjct: 128 LRISLLVGGDSMETQFEELAQSP-DVIIATPGRLMHHLAEVDDMTLRTVEYVVFDEADCL 186
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
FD GF ++ KIL L ++ QT+L +A + +L E
Sbjct: 187 FDMGFAEQLHKILAQLSENR--------QTLLFSATLPSVLAE 221
>gi|416108042|ref|ZP_11590880.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444345419|ref|ZP_21153437.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|348004666|gb|EGY45164.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|443542946|gb|ELT53226.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 443
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQ- 65
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q AK ++ +
Sbjct: 66 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTK 105
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 106 LSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQ 165
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 166 MGFGQDAEKI 175
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 19/202 (9%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
++E F++ GL AE+++A+ G P+ IQ IP VL G+ V+ ++ +G+G+T +
Sbjct: 11 DSEPALRFEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKTAGF 70
Query: 196 LLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMA 254
LP++Q+ + + P + HP RA++L T E ADQ
Sbjct: 71 SLPIIQLL----------------LANASNSASPAR--HPVRALILTPTRELADQVAENV 112
Query: 255 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
K L S++ GG+ A + ++IATP +L H++ + ++ + +V+
Sbjct: 113 KAYCRHTPLRSTVVFGGMDMAPQTAALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVM 172
Query: 315 DEADTLFDRGFGPEISKILNPL 336
DEAD + D GF P++ +I+N L
Sbjct: 173 DEADRMLDMGFLPDLQRIINLL 194
>gi|311104225|ref|YP_003977078.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
gi|310758914|gb|ADP14363.1| ATP-dependent RNA helicase RhlE 2 [Achromobacter xylosoxidans A8]
Length = 493
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 19/196 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++++ + G P+ IQ IP V+ G+ V+ ++ +G+G+T A+ LP++
Sbjct: 18 TFTDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPIL- 76
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
H L + T + P + HP RA++L T E ADQ + K S
Sbjct: 77 --------HRLMPLANT-------SASPAR--HPVRALILTPTRELADQVYESVKRYSKQ 119
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GGV ++ +L+ATP +L H+E +NV+ + +VLDEAD +
Sbjct: 120 TPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRM 179
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +I+ L
Sbjct: 180 LDMGFLPDLERIIRLL 195
>gi|449511783|ref|XP_004164052.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Cucumis sativus]
Length = 789
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 34/223 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ LGL A + + +++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P+++
Sbjct: 31 FESLGLSANVFRGIKRKGYRVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLER 90
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
Q H G+ RA++L T + A Q K +
Sbjct: 91 LKQ-----HEPQGGV------------------RALILSPTRDLALQTLKFTKELGKFTD 127
Query: 263 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTL 320
L S+ GG S + E+++ +P ++IATP ++ H+ E +++ + YVV DEAD L
Sbjct: 128 LRISLLVGGDSMETQFEELAQSP-DVIIATPGRLMHHLAEVDDMTLRTVEYVVFDEADCL 186
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
FD GF ++ KIL L ++ QT+L +A + +L E
Sbjct: 187 FDMGFAEQLHKILAQLSENR--------QTLLFSATLPSVLAE 221
>gi|392546250|ref|ZP_10293387.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas rubra ATCC
29570]
Length = 410
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F E L ++ A++KMG + IQ + IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FTEFDLDGTLLTAIKKMGFEQATSIQQLAIPEALMGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ RRD P R +++ T E A Q F + ++
Sbjct: 63 --------------LMDFPRRD-------PGFARVLIMTPTRELAYQVFEQCEALAAGTH 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ + +++ +LIATP +++++E N D++ ++LDEAD + D
Sbjct: 102 LKIGVVTGGINYGSHKEIFEKNNDILIATPGRLMEYLETENFHADNVELLILDEADRMLD 161
Query: 323 RGFGPEISKILNPLKD 338
GF E+ KI N K+
Sbjct: 162 LGFKKEMLKICNEAKN 177
>gi|90414183|ref|ZP_01222164.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
gi|90324733|gb|EAS41271.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
Length = 462
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 38/249 (15%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
+ SE E+ S ++ F++LGL ++K + +G +EIQ +P + GK V+ S
Sbjct: 3 VNSESERFYRS---IILHFKDLGLDPRLLKKLTHLGFDRATEIQRTAVPVAIMGKDVLAS 59
Query: 185 SGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTE 244
S +GSG+TLA+LLP +Q ++ RRD+ R ++L T
Sbjct: 60 SKTGSGKTLAFLLPAMQ-----------RMYRGKPFTRRDQ----------RVLILTPTR 98
Query: 245 ESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRN 303
E A Q F + ++ D ++ GG + + +++ P+ ++ATP H+E R+
Sbjct: 99 ELAKQVFAQLRTLNAGTPYDGALIVGGENFNDQVKEFRKDPM-FVVATPGRFADHLEHRS 157
Query: 304 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA-----IA 358
S D + ++LDEAD + D GF P++ +I +N + QT++ +A +
Sbjct: 158 TSLDGLEMLILDEADRMLDLGFAPQLRRIHEL-------ANHRRRQTLMFSATMDNEDVI 210
Query: 359 EMLGEQLSS 367
EM E L++
Sbjct: 211 EMASEMLNA 219
>gi|402565565|ref|YP_006614910.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402246762|gb|AFQ47216.1| DEAD/DEAH box helicase domain protein [Burkholderia cepacia GG4]
Length = 489
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
EH G + +R A++L T E A Q + S
Sbjct: 62 RLHTFYAEHR----GAKRAIR--------------ALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + ++ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|415909527|ref|ZP_11553150.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
gi|407762572|gb|EKF71396.1| ATP-dependent RNA helicase [Herbaspirillum frisingense GSF30]
Length = 493
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 19/195 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++ GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T + LP++Q
Sbjct: 18 FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
L H + P + HP RA++L T E ADQ
Sbjct: 78 L--LQHASH--------------SASPAR--HPVRALILTPTRELADQVADNVAAYCRFT 119
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV + A + ++IATP +L H++ + V+ + +V+DEAD +
Sbjct: 120 PLRSTVVFGGVDMSPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRML 179
Query: 322 DRGFGPEISKILNPL 336
D GF P++ +I+N L
Sbjct: 180 DMGFLPDLQRIINLL 194
>gi|422322840|ref|ZP_16403880.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
gi|317402151|gb|EFV82742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 481
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 19/195 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + GL +++++ + G P+ IQ IP V+ G+ V+ ++ +G+G+T A+ LP++
Sbjct: 20 FSDFGLHPLLLQSIAETGYTTPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPIL-- 77
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
H L M + + P + HP RA++L T E ADQ + K S
Sbjct: 78 -------HRL-------MPLANTSASPAR--HPVRALILTPTRELADQVYESVKRYSKQT 121
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV ++ +L+ATP +L H+E +NV+ + +VLDEAD +
Sbjct: 122 PLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRML 181
Query: 322 DRGFGPEISKILNPL 336
D GF P++ +I+ L
Sbjct: 182 DMGFLPDLERIIRLL 196
>gi|410619983|ref|ZP_11330868.1| ATP-dependent RNA helicase rhlE [Glaciecola polaris LMG 21857]
gi|410160438|dbj|GAC35006.1| ATP-dependent RNA helicase rhlE [Glaciecola polaris LMG 21857]
Length = 412
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 31/254 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++L L E+ +AV ++G P+ IQ + IPA + GK ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 FEQLDLDDELCRAVAELGYIEPTSIQQLVIPAAMEGKDILASAPTGTGKTAAFLLPVCQF 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
LD + + +G T++L +L T E A Q + A +S
Sbjct: 62 I--LD--YPRRGIGSTRIL-----------------ILTPTRELAQQVYQQALELSKYTD 100
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ + GG++ D + +L+ATP + +HIE + C DI ++LDEAD + D
Sbjct: 101 IVCGVITGGINYGTDRDTLERNLDILVATPGRLFEHIEQESFDCRDIECLILDEADRMLD 160
Query: 323 RGFGPEISKILNPLKDSA-LKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE----RDNA 377
GF S I+N + A + F L A I+ + L+ +E LE R
Sbjct: 161 MGF----SSIVNQISAEARWRKQSMLFSATLEGAGISRFAKDILNEPVE-LEAAPSRKEQ 215
Query: 378 GKVTAMLLEMDQAE 391
GK+ L D A+
Sbjct: 216 GKIHQWLHLADDAK 229
>gi|389877863|ref|YP_006371428.1| DEAD/DEAH box helicase [Tistrella mobilis KA081020-065]
gi|388528647|gb|AFK53844.1| DeaD [Tistrella mobilis KA081020-065]
Length = 521
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 22/191 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++LGL AE+++AV G P+ IQ IP VL G+ V+ + +G+G+T ++ LP++
Sbjct: 2 TFEDLGLSAEVLRAVTDAGYNQPTPIQEKAIPWVLQGRDVLGCAQTGTGKTASFTLPMID 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ +Q ++ PR++++ T E A Q
Sbjct: 62 ILAQGR----------------------VRARMPRSLIMTPTRELAQQIAENFNTYGKYT 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L ++ GGVS E + + +LIATP +L H E V D+R +V+DEAD +
Sbjct: 100 PLSMALLIGGVSFSDQEKALDKGVDVLIATPGRLLDHFERGRVLLTDVRILVVDEADRML 159
Query: 322 DRGFGPEISKI 332
D GF P++ +I
Sbjct: 160 DMGFIPDLERI 170
>gi|393777345|ref|ZP_10365637.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
gi|392715686|gb|EIZ03268.1| ATP-dependent RNA helicase hydrolase [Ralstonia sp. PBA]
Length = 516
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 95/192 (49%), Gaps = 18/192 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G VP+ IQ IPAVL G ++ + +G+G+T + LPL+Q
Sbjct: 2 SFSELGLSDKLVRAVTELGYTVPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L G + L PRA+VL T E A Q +
Sbjct: 62 -----------RLSGTAAAQAGNRRL-------PRALVLTPTRELAAQVEESVRDYGKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV D+ + +++ATP +L H R + +I +VLDEAD +
Sbjct: 104 PLRSMVMFGGVGINPQVDLLRKGVDIVVATPGRLLDHAGQRTIDLSNIEILVLDEADRML 163
Query: 322 DRGFGPEISKIL 333
D GF +I K+L
Sbjct: 164 DMGFIHDIRKVL 175
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 21/222 (9%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
QPE Q S I SE + F + GL ++++A+ G P+ IQ IP V
Sbjct: 5 QPEIQ--SEIQSEMQADPAVPTTPTVRFADFGLSPDILRALNDQGYVHPTPIQAEAIPVV 62
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235
L G+ V+ ++ +G+G+T + LP++Q+ + + + P + HP
Sbjct: 63 LQGRDVMGAAQTGTGKTAGFSLPIIQLL----------------LAHANTSASPAR--HP 104
Query: 236 -RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
RA++L T E ADQ K L S++ GGV + I ++IATP
Sbjct: 105 VRALILTPTRELADQVAENVKAYCRHTPLRSTVVFGGVDIAPQTAALRSGIEIVIATPGR 164
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
+L H++ + ++ + +V+DEAD + D GF P++ +I+N L
Sbjct: 165 LLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDLQRIINLL 206
>gi|339482299|ref|YP_004694085.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804444|gb|AEJ00686.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 493
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 99/198 (50%), Gaps = 25/198 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++++A+ G P+ IQ IP +L+G V+ + +G+G+T ++ LP
Sbjct: 3 FEQLGLSTDLMRAISDQGYTKPTPIQEQAIPIILDGNDVMGGAQTGTGKTASFTLP---- 58
Query: 203 YSQLDEEHHLQLVGITQMLRRDE--ALLPMKPM-HP-RAIVLCTTEESADQGFHMAKFIS 258
MLRR E A M P HP RA++L T E A Q K
Sbjct: 59 -----------------MLRRLEIYANTSMSPAKHPIRALILVPTRELAVQVHESVKTYG 101
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L S++ GGV+ A + + I +L+ATP +L H++ + + I +LDEAD
Sbjct: 102 KYLPLRSTVIYGGVNIDAQINAVRSGIEILVATPGRLLDHLQQKTLGLSKIEIFILDEAD 161
Query: 319 TLFDRGFGPEISKILNPL 336
+ D GF P+I +I+ L
Sbjct: 162 RMLDMGFMPDIKQIIQLL 179
>gi|374367571|ref|ZP_09625632.1| helicase [Cupriavidus basilensis OR16]
gi|373100874|gb|EHP41934.1| helicase [Cupriavidus basilensis OR16]
Length = 496
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 31/202 (15%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL A + +A+ + G P+ IQ IP VL GK V+ ++ +G+G+T + LP++Q
Sbjct: 14 TFDSFGLDARIQRALSEQGYTKPTPIQEQAIPVVLQGKDVMGAAQTGTGKTAGFALPIIQ 73
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQGFHMA 254
LLP+ HP RA++L T E ADQ +
Sbjct: 74 ------------------------RLLPLASASASPARHPVRALMLTPTRELADQVYDNV 109
Query: 255 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ L S++ GGV + + +L+ATP +L H++ ++V+ ++ +VL
Sbjct: 110 ARYARFTDLRSTVVFGGVDMNPQTEALRRGVEILVATPGRLLDHVQQKSVNLSQVQMLVL 169
Query: 315 DEADTLFDRGFGPEISKILNPL 336
DEAD + D GF P++ +I+N L
Sbjct: 170 DEADRMLDMGFLPDLQRIINLL 191
>gi|336124562|ref|YP_004566610.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335342285|gb|AEH33568.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 430
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 104/194 (53%), Gaps = 21/194 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F LGL ++KAV ++G P+ IQ IPA+L GK+V+ ++ +G+G+T +++LP++Q+
Sbjct: 21 FSNLGLSDPILKAVHELGYSAPTPIQEQAIPAILTGKNVIAAAQTGTGKTASFVLPILQM 80
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
SQ G TQ +R AL+ + P + EE+ Q AK++
Sbjct: 81 LSQ----------GTTQRAKRVRALI----LAPTRELALQVEENVTQ---YAKYLP---- 119
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L GGV S+ + + +LIATP +L R V D++ +V+DEAD + D
Sbjct: 120 LTCLAMYGGVDSQKQKQRLIEGVDILIATPGRLLDMYGQRAVHFDELEVLVMDEADRMLD 179
Query: 323 RGFGPEISKILNPL 336
GF +I+KI++ L
Sbjct: 180 MGFIEDINKIVDRL 193
>gi|209363862|ref|YP_001424084.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212212853|ref|YP_002303789.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212219099|ref|YP_002305886.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
gi|215919015|ref|NP_819700.2| ATP-dependent RNA helicase rhlE [Coxiella burnetii RSA 493]
gi|206583900|gb|AAO90214.2| ATP-dependent RNA helicase [Coxiella burnetii RSA 493]
gi|207081795|gb|ABS77088.2| ATP-dependent RNA helicase [Coxiella burnetii Dugway 5J108-111]
gi|212011263|gb|ACJ18644.1| ATP-dependent RNA helicase [Coxiella burnetii CbuG_Q212]
gi|212013361|gb|ACJ20741.1| ATP-dependent RNA helicase [Coxiella burnetii CbuK_Q154]
Length = 420
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 129/255 (50%), Gaps = 32/255 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++A+ + G P+ +Q IP +L + V++++ +G+G+T + LPL+Q
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L L+R KP+ RA++L T E A Q F +
Sbjct: 71 -----------RLFVSRPPLQRSA-----KPV-IRALILTPTRELAVQVFECVRAYGKYL 113
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L +++ +GGVS K + + +L+ATP +L + ++ + + VLDEAD +
Sbjct: 114 PLKATVVHGGVSIKPQINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRML 173
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA----IAEMLGEQLSS--LMECLERD 375
D GF P+I +IL L +S Q +L +A I E+ + L S L+E R+
Sbjct: 174 DMGFLPDIRRILKLLPESR--------QNLLFSATFSKEIKELTDKLLHSPALIEVARRN 225
Query: 376 N-AGKVTAMLLEMDQ 389
A ++T ++ +D+
Sbjct: 226 TAAARITHVVHPVDR 240
>gi|221133360|ref|ZP_03559665.1| ATP-dependent RNA helicase SrmB [Glaciecola sp. HTCC2999]
Length = 422
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++L L A++ A+ MG P+ IQ IP + G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 FEQLELHADLCNALGDMGFTAPTSIQSSVIPKAMEGRDILASAPTGTGKTAAFLLPAAQF 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
E+H G T++L +L T E A Q + A I+
Sbjct: 62 LLDFPREYH----GATRIL-----------------ILSPTRELAIQTYEHALEITQHTN 100
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ + GG++ D + +L+ATP + +HIE + C DI ++LDEAD + D
Sbjct: 101 IVCGVITGGINYGTDRDTLAKNLDILVATPGRLFEHIEKESFDCRDIEVMILDEADRMLD 160
Query: 323 RGFGPEISKI 332
GF +++I
Sbjct: 161 MGFRSIVNQI 170
>gi|157369574|ref|YP_001477563.1| ATP-dependent RNA helicase RhlE [Serratia proteamaculans 568]
gi|157321338|gb|ABV40435.1| DEAD/DEAH box helicase domain protein [Serratia proteamaculans 568]
Length = 456
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S + D A+ +P+ RA++L T E A Q + S
Sbjct: 62 LLS-----------------KHDHAVKGRRPV--RALILTPTRELAAQIGENVESYSKYL 102
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
RL S + GGVS + +L+ATP +L R V I +VLDEAD +
Sbjct: 103 RLRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQRAVDLSKIEILVLDEADRML 162
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 163 DMGFIHDIRRVLAKL 177
>gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
Length = 523
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 16/238 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 47 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 106
Query: 202 VYSQLDEEHHLQLVG---ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FI 257
++QL + H Q Q RR A P P +VL T E A Q A +
Sbjct: 107 RFAQLQKAHAQQPRAPREAGQGERR--ARRPQPVARPGLLVLTPTRELAMQVTTAASTYG 164
Query: 258 SHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDE
Sbjct: 165 KHLKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDE 223
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
AD + D GF +I I+ S QT+L +A + +G S L++ ER
Sbjct: 224 ADRMLDMGFIDDIETIVAATPASR--------QTMLFSATLDGKIGSLTSRLLKDPER 273
>gi|33598065|ref|NP_885708.1| ATP-dependent RNA helicase [Bordetella parapertussis 12822]
gi|33566623|emb|CAE38832.1| putative ATP-dependent RNA helicase [Bordetella parapertussis]
Length = 477
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 23/211 (10%)
Query: 131 KSSGSNAEVVS----SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSG 186
+S+ S+A V +F + GL ++K++ G P+ IQ IP V+ G+ V+ ++
Sbjct: 3 ESTSSDAPVTDAPTRTFADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQ 62
Query: 187 SGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEE 245
+G+G+T A+ LP++ H L + T + P + HP RA++L T E
Sbjct: 63 TGTGKTAAFTLPIL---------HRLMPLANT-------SASPAR--HPVRALILTPTRE 104
Query: 246 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305
ADQ + K S L S++ GGV ++ +L+ATP +L H+E +NV+
Sbjct: 105 LADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVN 164
Query: 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
+ +VLDEAD + D GF P++ +I+ L
Sbjct: 165 LSQVGILVLDEADRMLDMGFLPDLERIIRLL 195
>gi|301615062|ref|XP_002936986.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Xenopus
(Silurana) tropicalis]
Length = 614
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 172 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 231
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++ H
Sbjct: 232 IMFC--LEQEKRLPFA---------------KREGPYGLIICPSRELARQTHSIIEYYCH 274
Query: 260 CARLD------SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ D +++ GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 275 LLQEDNFPHLRTALCIGGMSVKEQMETIKQGVHMMVATPGRLMDLLQKKMVSLDICRYLA 334
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 335 LDEADRMIDMGFEEDIRTIFSYFK-------GQR-QTLLFSATM 370
>gi|432885908|ref|XP_004074816.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 2 [Oryzias
latipes]
Length = 853
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 38/248 (15%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ ++L ++++K SG FQ +GL + K V K G VP+ IQ IP +
Sbjct: 60 EPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPVI 112
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235
L+GK VV + +GSG+T A+L+P+ + P
Sbjct: 113 LDGKDVVAMARTGSGKTAAFLVPMFEKLKA-----------------------PQASAGA 149
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA+++ T E A Q K + A L +++ GG + + ++I TP +
Sbjct: 150 RALIMSPTRELALQTMKFTKELGKFAGLKTALILGGDRMEDQFAALHENPDIIIGTPGRL 209
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
+ +++ N+ + YVV DEAD LF+ GF ++ +I+ L D+ QT+L +A
Sbjct: 210 MHVVKEMNLKLHSVEYVVFDEADRLFEMGFAEQLQEIIQRLPDTR--------QTLLFSA 261
Query: 356 AIAEMLGE 363
+ ++L E
Sbjct: 262 TLPKLLVE 269
>gi|444375654|ref|ZP_21174907.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
gi|443680157|gb|ELT86804.1| ATP-dependent RNA helicase RhlE [Enterovibrio sp. AK16]
Length = 508
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 25/195 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F +LGL A +++A+++ G PS IQ IPAVL GK V+ ++ +G+G+T ++LP+++
Sbjct: 2 GFTDLGLSAPILRAIQEKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S+ +P H RA++L T E A Q A S
Sbjct: 62 RLSEGSR---------------------TRPNHIRALILTPTRELAAQIHENAVVYSRHL 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
RL SS+ GGV K + N G +L+ATP +L + V + +VLDEAD
Sbjct: 101 RLRSSVVFGGV--KINPQMMNLRKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF +I KIL+
Sbjct: 159 MLDMGFFRDIKKILD 173
>gi|387902864|ref|YP_006333203.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577756|gb|AFJ86472.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 493
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 33/204 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 11 ATFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 70
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMK------PMHP-RAIVLCTTEESADQ-GFH 252
Q LLP HP RA++L T E ADQ +
Sbjct: 71 Q------------------------RLLPHASTSASPARHPVRALILTPTRELADQVAAN 106
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H A L S++ GGV + +LIATP +L H++ + + ++ +
Sbjct: 107 VHAYAKHTA-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQML 165
Query: 313 VLDEADTLFDRGFGPEISKILNPL 336
VLDEAD + D GF P++ +ILN L
Sbjct: 166 VLDEADRMLDMGFLPDLQRILNLL 189
>gi|299067900|emb|CBJ39113.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum CMR15]
Length = 548
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 14/195 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL- 60
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H L V ++ + P+ RA+VL T E A Q +
Sbjct: 61 --------HRLSAVQPNKVQTPNGMRYPI-----RALVLTPTRELAAQVEESVRAYGKYL 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV D + +++ATP +L H+ R + I +VLDEAD +
Sbjct: 108 PLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRML 167
Query: 322 DRGFGPEISKILNPL 336
D GF +I KILN L
Sbjct: 168 DMGFIHDIRKILNIL 182
>gi|432885906|ref|XP_004074815.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 1 [Oryzias
latipes]
Length = 852
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 116/248 (46%), Gaps = 38/248 (15%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ ++L ++++K SG FQ +GL + K V K G VP+ IQ IP +
Sbjct: 59 EPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPVI 111
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235
L+GK VV + +GSG+T A+L+P+ + P
Sbjct: 112 LDGKDVVAMARTGSGKTAAFLVPMFEKLKA-----------------------PQASAGA 148
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA+++ T E A Q K + A L +++ GG + + ++I TP +
Sbjct: 149 RALIMSPTRELALQTMKFTKELGKFAGLKTALILGGDRMEDQFAALHENPDIIIGTPGRL 208
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
+ +++ N+ + YVV DEAD LF+ GF ++ +I+ L D+ QT+L +A
Sbjct: 209 MHVVKEMNLKLHSVEYVVFDEADRLFEMGFAEQLQEIIQRLPDTR--------QTLLFSA 260
Query: 356 AIAEMLGE 363
+ ++L E
Sbjct: 261 TLPKLLVE 268
>gi|218676562|ref|YP_002395381.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324830|emb|CAV26551.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 423
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 99/202 (49%), Gaps = 18/202 (8%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E SF +LGL ++ + ++ P+ +Q IP VL GK V+ + +G+G+T A+
Sbjct: 2 SESTKSFNQLGLSEHLLATLSELNFTAPTSVQEQAIPLVLEGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LP++Q +++ + ++P P RA+VL T E A Q F
Sbjct: 62 LPIIQ-----------------RLIETKDNVIP-NPKLVRALVLVPTRELAQQVFDNVTS 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ + + GGVS K + +L+ATP ++ H+ +N+ +VLDE
Sbjct: 104 YAKGTDIKVVVAYGGVSMKVQTENLRGGADILVATPGRLIDHMFTKNIMLSHTEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPLKD 338
AD + D GF P+I +IL+ + +
Sbjct: 164 ADRMLDMGFMPDIKRILSRMNE 185
>gi|145588789|ref|YP_001155386.1| DEAD/DEAH box helicase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047195|gb|ABP33822.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 473
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 29/223 (13%)
Query: 122 LSNIASEREKSSGS--------NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP 173
++N A+E ++G+ N +F + GL ++ KAV + G +P+ IQ IP
Sbjct: 1 MTNTATEITSTTGAGDQATPSDNTPATITFADFGLDPKIQKAVAEQGYSIPTPIQAQSIP 60
Query: 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRR-DEALLPMKP 232
VL G ++ ++ +G+G+T A++LP++Q Q+LR + P +
Sbjct: 61 HVLAGSDLMGAAQTGTGKTAAFVLPIIQ-----------------QILRHASNSASPAR- 102
Query: 233 MHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIAT 291
HP RA+VL T E A Q A S L +++ GGV K + + +LIAT
Sbjct: 103 -HPIRALVLTPTRELAVQVAENAASYSKHTDLRAAVVYGGVDMKEQVAILRNGVEILIAT 161
Query: 292 PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
P +L HI + + + +VLDEAD + D GF P++ +I++
Sbjct: 162 PGRLLDHIGSKVANLSQVEILVLDEADRMLDMGFLPDLQRIID 204
>gi|332285242|ref|YP_004417153.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
gi|330429195|gb|AEC20529.1| ATP-dependent RNA helicase [Pusillimonas sp. T7-7]
Length = 455
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 19/196 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F + GL +++AV + G P+ IQ +P V++G+ V+ ++ +G+G+T A+ LP++
Sbjct: 13 TFSDFGLHPSVLQAVTETGYTTPTPIQAQAMPMVMDGRDVMGAAQTGTGKTAAFTLPIL- 71
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
H L M + + P + HP RA++L T E ADQ +
Sbjct: 72 --------HRL-------MQFANTSASPAR--HPVRALILTPTRELADQVADSVTTYAKF 114
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GGV D +LIATP +L H+E +NV+ + +VLDEAD +
Sbjct: 115 TPLRSTVVFGGVDIGPQRDALRRGCEILIATPGRLLDHVEQKNVNLSQVGILVLDEADRM 174
Query: 321 FDRGFGPEISKILNPL 336
D GF P++ +I+ L
Sbjct: 175 LDMGFLPDLDRIVRLL 190
>gi|302762591|ref|XP_002964717.1| hypothetical protein SELMODRAFT_142751 [Selaginella moellendorffii]
gi|300166950|gb|EFJ33555.1| hypothetical protein SELMODRAFT_142751 [Selaginella moellendorffii]
Length = 420
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 19/181 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ LG EMI A+ + + PSEIQ + V+ G S +++ +GSG+TLAYL PLVQ
Sbjct: 21 FQALGASQEMIAALSSLEIVRPSEIQALSYKQVMRGNSCIIADQTGSGKTLAYLAPLVQR 80
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ +E+ + +PR +VL T E A Q + + +S
Sbjct: 81 LREDEEKGNFSTA-----------------KNPRVLVLAPTSELAMQVLSVCRALSTTCP 123
Query: 263 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GG K +E++++ P +++ATP L H+E+ + ++ VVLDE D LF
Sbjct: 124 LKSMVATGGFKWKTQVENLASGP-DIVVATPGRFLHHLEEETIQLGKLQSVVLDEVDILF 182
Query: 322 D 322
+
Sbjct: 183 E 183
>gi|284007123|emb|CBA72399.1| ATP-dependent RNA helicase [Arsenophonus nasoniae]
Length = 438
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 19/198 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ F LGL AE++ A+++ G P+ IQ IPA+L GK ++ S+ +G+G+T ++LP
Sbjct: 5 IFMCFNSLGLSAEILSAIKEAGYEKPTSIQQQAIPAILAGKDLLASAQTGTGKTAGFVLP 64
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
++Q SQ T ++ + + KP+ RA++L T E A Q + S
Sbjct: 65 ILQHLSQ------------TPVVVKGK-----KPV--RALILAPTRELAAQVGQNVRNYS 105
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL S + GGVS + +L+ATP +L ++ VS + +VLDEAD
Sbjct: 106 QFLRLKSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLVQQNAVSLSQVEILVLDEAD 165
Query: 319 TLFDRGFGPEISKILNPL 336
+ D GF +I +IL+ L
Sbjct: 166 RMLDMGFIHDIRRILDKL 183
>gi|269140076|ref|YP_003296777.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
gi|387868591|ref|YP_005700060.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
gi|267985737|gb|ACY85566.1| ATP-dependent RNA helicase [Edwardsiella tarda EIB202]
gi|304559904|gb|ADM42568.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda FL6-60]
Length = 448
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F EL L ++ A+ G P+ IQ IP ++G+ V+ S+ +G+G+T A+LLP +
Sbjct: 4 TNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPAL 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISH 259
Q H L P K P R ++L T E A Q A+ ++
Sbjct: 64 Q--------HLLDF--------------PRKKSGPPRVLILTPTRELAMQVADQARELAR 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGVS ++ N M++ATP +LQ+I++ N C + ++LDEAD
Sbjct: 102 HTSLDITTITGGVSYINHAEIFNTNQDMVVATPGRLLQYIKEENFDCRAVETLILDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ D GF +I +
Sbjct: 162 MLDMGFASDIETV 174
>gi|71026488|ref|XP_762914.1| hypothetical protein [Theileria parva strain Muguga]
gi|68349866|gb|EAN30631.1| hypothetical protein TP03_0790 [Theileria parva]
Length = 1732
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 33/227 (14%)
Query: 120 QQLSNIASEREKSSGSNAEVVSSFQELGLKAEM-IKAVEKMG----------LFVPSEIQ 168
+ ++N R + + + ++ +LGL M I A+ + +F PS IQ
Sbjct: 932 RNMTNAQRNRIEKLNFSENAIENWTKLGLNKTMAISALSYLSHNYGNSLDNMVFKPSLIQ 991
Query: 169 CVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEA 226
+GI VLN K++V+S G G+TL YLLP I Q L+ DE
Sbjct: 992 KLGIEEVLNKSRKNLVISGAVGGGKTLTYLLP------------------ILQRLKEDEL 1033
Query: 227 LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG 286
+P PR +++ T E + F K +SH ++ + GV+SK ++D +
Sbjct: 1034 TKLREPSSPRCLIITPTTELCSEIFTAVKKLSHLVKITGLQVSKGVNSKTIKDKLKGLVD 1093
Query: 287 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
+++ATPS +L+ +++ + ++YVVL+E+D LF+ GF P + IL
Sbjct: 1094 VVVATPSRLLKF--RKHLKFNKLKYVVLEESDCLFNEGFFPLVYTIL 1138
>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 512
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 33/202 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP++
Sbjct: 33 ATFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPII 92
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM------HP-RAIVLCTTEESADQ-GFH 252
Q LLP HP RA++L T E ADQ +
Sbjct: 93 Q------------------------RLLPHASTSASPARHPVRALILTPTRELADQVAAN 128
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + H A L S++ GGV + +LIATP +L H++ + + ++ +
Sbjct: 129 VHAYAKHTA-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQML 187
Query: 313 VLDEADTLFDRGFGPEISKILN 334
VLDEAD + D GF P++ +ILN
Sbjct: 188 VLDEADRMLDMGFLPDLQRILN 209
>gi|346992915|ref|ZP_08860987.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. TW15]
Length = 455
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 22/199 (11%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
N ++ F EL L +++KA+E+ G P+ IQ IPA L G+ V+ + +G+G+T ++
Sbjct: 2 NRTYMTKFNELNLNPKVLKAIEEAGYETPTPIQEGAIPAALEGRDVLGIAQTGTGKTASF 61
Query: 196 LLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
LP++ +L R A M PR++VLC T E A Q
Sbjct: 62 TLPMI------------------TLLARGRARARM----PRSLVLCPTRELAAQVAENFD 99
Query: 256 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315
+ +L ++ GGVS K + + + + +LIATP +L H E + ++ +V+D
Sbjct: 100 TYAKHLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVD 159
Query: 316 EADTLFDRGFGPEISKILN 334
EAD + D GF P+I +I +
Sbjct: 160 EADRMLDMGFIPDIERIFS 178
>gi|359407402|ref|ZP_09199879.1| DNA/RNA helicase, superfamily II [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677441|gb|EHI49785.1| DNA/RNA helicase, superfamily II [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 471
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 22/198 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+ SSF +LGL E++ AV +G P+ IQ IP+VL G+ ++ S+ +G+G+T ++ LP
Sbjct: 23 ISSSFIDLGLSNELVNAVTLLGYEQPTPIQSASIPSVLMGRDILGSAQTGTGKTASFTLP 82
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
++ + A K PR+++L T E A Q + S
Sbjct: 83 MIDIL----------------------AAGRAKARMPRSLILAPTRELAAQVAESFEKFS 120
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
++ ++ GGVS + + + +LIATP +L H E V D++ +V+DEAD
Sbjct: 121 VNHKMSMALLIGGVSFSDQDAALSKGVDVLIATPGRLLDHFERGKVLLQDVKILVIDEAD 180
Query: 319 TLFDRGFGPEISKILNPL 336
+ D GF P++ +I++ L
Sbjct: 181 RMLDMGFIPDVERIVSYL 198
>gi|359492294|ref|XP_002279081.2| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Vitis vinifera]
Length = 784
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 34/223 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ LGL + +A+++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P+++
Sbjct: 29 FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
Q H+ G+ RA++L T + A Q K ++
Sbjct: 89 LKQ-----HVPQTGV------------------RALILSPTRDLALQTLKFTKELARYTD 125
Query: 263 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTL 320
+ S+ GG S ++ E+++ P ++IATP ++ H+ E ++S + YVV DEAD L
Sbjct: 126 VRISLLVGGDSMESQFEELAQNP-DIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCL 184
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
F GF ++ KIL L D+ QT+L +A + L E
Sbjct: 185 FGMGFAEQLHKILAQLSDNR--------QTLLFSATLPSALAE 219
>gi|302142729|emb|CBI19932.3| unnamed protein product [Vitis vinifera]
Length = 786
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 34/223 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ LGL + +A+++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P+++
Sbjct: 29 FESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLER 88
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
Q H+ G+ RA++L T + A Q K ++
Sbjct: 89 LKQ-----HVPQTGV------------------RALILSPTRDLALQTLKFTKELARYTD 125
Query: 263 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTL 320
+ S+ GG S ++ E+++ P ++IATP ++ H+ E ++S + YVV DEAD L
Sbjct: 126 VRISLLVGGDSMESQFEELAQNP-DIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCL 184
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
F GF ++ KIL L D+ QT+L +A + L E
Sbjct: 185 FGMGFAEQLHKILAQLSDNR--------QTLLFSATLPSALAE 219
>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 496
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A ++KA+ K G P+ IQ IPAVL GK V+ ++ +G+G+T + LPL++
Sbjct: 2 SFSSLGLSAALLKAIAKQGYDTPTAIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S+ Q+ RA+VL T E A Q + H
Sbjct: 62 ILSKGKPAQRGQV---------------------RALVLTPTRELAAQVADSVETYGHNL 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGVS + +L+ATP +L R +S + +VLDEAD +
Sbjct: 101 PLKSAVVFGGVSIVPQIAALKQGVDILVATPGRLLDLCNQRALSFSTLEILVLDEADRML 160
Query: 322 DRGFGPEISKIL 333
D GF +I K+L
Sbjct: 161 DMGFIRDIRKVL 172
>gi|323493912|ref|ZP_08099029.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323311853|gb|EGA65000.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 419
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 18/198 (9%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ F LGL + ++ +E +G P+E+Q IP VL GK V+ + +G+G+T A+ LP++
Sbjct: 3 TQFAALGLGSTLLSTLESLGFKQPTEVQTQAIPHVLEGKDVLAGAQTGTGKTAAFGLPIL 62
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q D + +Q + RA+VL T E A Q F +
Sbjct: 63 QKLIDSDTKRDIQSNDV------------------RALVLVPTRELAQQVFDNLTQYAAQ 104
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
++ GG S + +LIATP ++ H+ +N++ Y+VLDEAD +
Sbjct: 105 TKIKVVAVYGGTSMNVQTRNLDQGCDILIATPGRLIDHMYCKNINLHKTEYLVLDEADRM 164
Query: 321 FDRGFGPEISKILNPLKD 338
D GF P+I +IL D
Sbjct: 165 LDMGFMPDIKRILQRCND 182
>gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 516
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPM-HPRAIVLCTTEESADQGFHMAK-FISH 259
++QL + Q + + D + +P+ P +VL T E A Q A + H
Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 215
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ +S QT+L +A + +G S L++ ER
Sbjct: 216 RMLDMGFIEDIETIVAATPESR--------QTMLFSATLDGKIGSLTSRLLKDPER 263
>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 487
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL A+++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 9 VDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 68
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 69 ILQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 110
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 111 GKHTP-LRSAVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDE 169
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 170 ADRMLDMGFLPDLQRILN 187
>gi|54302661|ref|YP_132654.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46916085|emb|CAG22854.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
Length = 474
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 38/249 (15%)
Query: 125 IASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLS 184
+ SE E+ S ++ F++LGL ++K + +G +EIQ +P + GK V+ S
Sbjct: 15 VNSESERFYRS---IILHFKDLGLDPRLLKKLTHLGFERATEIQRTAVPVAIMGKDVLAS 71
Query: 185 SGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTE 244
S +GSG+TLA+LLP +Q ++ RRD+ R ++L T
Sbjct: 72 SKTGSGKTLAFLLPAMQ-----------RMYRGKPFTRRDQ----------RVLILTPTR 110
Query: 245 ESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRN 303
E A Q F + ++ D ++ GG + + +++ P+ ++ATP H+E R+
Sbjct: 111 ELAKQVFAQLRTLNAGTPYDGALIVGGENFNDQVKEFRKDPM-FVVATPGRFADHLEHRS 169
Query: 304 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA-----IA 358
S D + ++LDEAD + D GF P++ +I +N + QT++ +A +
Sbjct: 170 TSLDGLEMLILDEADRMLDLGFAPQLRRIHEL-------ANHRRRQTLMFSATMDNEDVI 222
Query: 359 EMLGEQLSS 367
EM E L++
Sbjct: 223 EMASEMLNA 231
>gi|71275478|ref|ZP_00651764.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Dixon]
gi|170729397|ref|YP_001774830.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
gi|71163778|gb|EAO13494.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Dixon]
gi|71729590|gb|EAO31696.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal [Xylella
fastidiosa Ann-1]
gi|167964190|gb|ACA11200.1| ATP-dependent RNA helicase [Xylella fastidiosa M12]
Length = 446
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 112/234 (47%), Gaps = 28/234 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL +++A+ + G +P+ IQ IP L G ++ ++ +G+G+T A+ LP++Q
Sbjct: 2 NFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTGKTAAFGLPVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
VG + PRA+VL T E A Q + +
Sbjct: 62 RLMAASSN-----VGAGK---------------PRALVLTPTRELATQVHDSLRGYAKYQ 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S++ GGV DV + +LIA P ++ HIE R+V + +VLDEAD +
Sbjct: 102 RVSSAVIYGGVGMGNQLDVLRRGVDLLIACPGRLIDHIERRSVDLSGVGILVLDEADRML 161
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
D GF I +IL L Q QT+L +A AE + +QL+ C R+
Sbjct: 162 DMGFLHSIKRILGKLPR-------QNRQTLLFSATFAEPI-KQLALEFMCRPRE 207
>gi|256829787|ref|YP_003158515.1| DEAD/DEAH box helicase [Desulfomicrobium baculatum DSM 4028]
gi|256578963|gb|ACU90099.1| DEAD/DEAH box helicase domain protein [Desulfomicrobium baculatum
DSM 4028]
Length = 545
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 22/195 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL+ E++KA++ G P+ IQ IP +L G+ ++ + +G+G+T A+ LP+VQ
Sbjct: 2 SFDQLGLRVELLKAIKNKGYEAPTAIQAQAIPVILAGRDILARAQTGTGKTDAFGLPIVQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ H HPRA++L T E A Q K +
Sbjct: 62 ILGLTRGNGH----------------------HPRALILTPTRELALQVGESIKAYARKV 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L ++ GGV + I +L+ATP +L ++S I ++V DEAD +
Sbjct: 100 SLRCTVAFGGVRIEPQIARLERGIDILVATPGRLLDLASQEHLSLASIEFLVFDEADRML 159
Query: 322 DRGFGPEISKILNPL 336
D GF EI+ IL+ L
Sbjct: 160 DLGFSGEINAILDLL 174
>gi|344299490|gb|EGW29843.1| hypothetical protein SPAPADRAFT_157925 [Spathaspora passalidarum
NRRL Y-27907]
Length = 553
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 115/213 (53%), Gaps = 30/213 (14%)
Query: 127 SEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSG 186
++ ++SS + ++V ++FQ L L ++K + ++G PS IQ IP L GK +V +
Sbjct: 26 ADEQESSAAKSQVHTTFQTLQLSRPVLKGLAQLGYVKPSPIQSASIPIALLGKDIVAGAQ 85
Query: 187 SGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEES 246
+GSG+T AY++P+++ ++L + P K R IVL T E
Sbjct: 86 TGSGKTAAYMIPIIE-----------------RLLYK-----PSKVPSTRVIVLTPTREL 123
Query: 247 A----DQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
A D G +++FI++ L+ + GG++ + E + ++IATP ++ HI +
Sbjct: 124 AIQVCDVGKKLSQFINN---LNFGLAVGGLNLRQQELQLKSRPDIVIATPGRLIDHIRNS 180
Query: 303 -NVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
+ S D++ +V+DEAD + D GF E+++IL+
Sbjct: 181 PSFSIDNLEVLVIDEADRMLDEGFQAELTEILS 213
>gi|83945168|ref|ZP_00957517.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
gi|83851338|gb|EAP89194.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Oceanicaulis sp. HTCC2633]
Length = 466
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 28/220 (12%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+++ F + GL ++ A+ + G P+ IQ IPAV+ G ++ + +G+G+T A++LP
Sbjct: 17 ILTKFTDFGLNPSILTAISEQGYETPTPIQARAIPAVMKGHDLIGLAQTGTGKTAAFVLP 76
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
LV QL E+ Q G + RA++L T E A Q K +
Sbjct: 77 LVH---QLLAENK-QAPGRSC----------------RALILAPTRELAAQIEEQVKAYT 116
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L S++ GGV + + +L+ATP +L H+ +R D R+V+LDEAD
Sbjct: 117 AHTKLTSTVVFGGVKAGPQIKALARGVDILVATPGRLLDHLGERKARLDLTRFVILDEAD 176
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
+ D GF P I K+ L+ G+ QT++ +A +A
Sbjct: 177 QMLDLGFIPAIRKL--------LRMVGEERQTLMFSATMA 208
>gi|395844567|ref|XP_003804107.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX31, partial [Otolemur garnettii]
Length = 773
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 27/222 (12%)
Query: 141 SSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++F ELGL +I + + + + +Q IPA+L G+ ++ S +GSG+TLAY +P+
Sbjct: 161 AAFHELGLHPHLISTINTVLKMSSMTRVQKQTIPALLEGRDALVRSQTGSGKTLAYCIPV 220
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFIS 258
VQ L G+ ++R + P A+VL T E A Q F + K +
Sbjct: 221 VQ-----------SLQGVQSKIQRSDG--------PYALVLVPTRELALQSFDTIQKLLK 261
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEA 317
+ + GG K+ + I +LI+TP ++ HI+ +N+ + IR+++ DEA
Sbjct: 262 PFTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFNRIRWLIFDEA 321
Query: 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
D + D GF +I+ ILN A+ + Q Q +L++A + E
Sbjct: 322 DRILDLGFEKDITVILN-----AVNAECQKRQNVLLSATLTE 358
>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 472
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +LGL +++AV G P+ IQ IP VL G ++ ++ +G+G+T + LPL+Q
Sbjct: 5 TFADLGLADPLLRAVADTGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTLPLLQ 64
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ HH PRA+VL T E A Q + S
Sbjct: 65 LL-MCSPSHHAG--------------------RPRALVLTPTRELAAQVEESVRTYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV+ AP+ +L+ATP +L H+ + V + +VLDEAD +
Sbjct: 104 PLKSLVMFGGVNINPQIKALRAPVDILVATPGRLLDHVGQKTVDLSGVEILVLDEADRML 163
Query: 322 DRGFGPEISKIL 333
D GF +I K+L
Sbjct: 164 DMGFIHDIKKVL 175
>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 417
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 36/225 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F LGL A ++KA+++ G P+ IQ IP +L K ++ + +G+G+T + LPL+
Sbjct: 5 TTFNSLGLSAPILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFTLPLL 64
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFIS 258
++L R++ P K H RA++L T E A Q G +A +
Sbjct: 65 ------------------ELLSREK---PTKQKHKIRALILTPTRELAAQVGESVALYGK 103
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H S++ GGV K +SN G ++IATP +L HI + + ++ Y++LDE
Sbjct: 104 HLP-FKSTVIFGGV--KINPQISNLRKGTDIVIATPGRLLDHISQKTIDLREVEYLILDE 160
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
AD + D GF +I KILN + + QT+L +A ++ +
Sbjct: 161 ADRMLDMGFINDIKKILNIIPNQR--------QTLLFSATYSDAI 197
>gi|119896607|ref|YP_931820.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119669020|emb|CAL92933.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 447
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 30/234 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E+I AVE+ G P+ +Q IPA + G +++SS +GSG+T A+ LP +
Sbjct: 2 TFHALGLAEELIAAVEQSGYTTPTPVQEQAIPAAIAGGDLLVSSHTGSGKTAAFTLPSLH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+LVG RR P PR +VL T E A Q K
Sbjct: 62 -----------RLVG-----RR-----PAPNSGPRVLVLTPTRELAQQVEEAVKTYGRAL 100
Query: 262 R-LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R L+++ GG A + P+ +++ATP +L H+ R + D+ +VLDEAD +
Sbjct: 101 RWLNTACLVGGAPFFAQVKQLSRPVDVVVATPGRLLDHLNRRKLKLSDVETLVLDEADRM 160
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
D GF +I I+ + S QT+L +A + ++G + L +R
Sbjct: 161 LDMGFAEDIEAIVGAIPASR--------QTLLFSATLDGVVGALANKLTRNPQR 206
>gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 514
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 37 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPM-HPRAIVLCTTEESADQGFHMAK-FISH 259
++QL + Q + + D + +P+ P +VL T E A Q A + H
Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 215
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ +S QT+L +A + +G S L+ ER
Sbjct: 216 RMLDMGFIEDIETIVAATPESR--------QTMLFSATLDGKIGSLTSRLLRDPER 263
>gi|254480404|ref|ZP_05093651.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214038987|gb|EEB79647.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 429
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL AE+++AVE G + IQ IP VL GK V+ + +G+G+T + LP++Q
Sbjct: 3 FKDLGLSAELLRAVETQGYDEATPIQQQAIPLVLKGKDVLAGAQTGTGKTAGFTLPVLQ- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+L H + HPR +VL T E A Q +
Sbjct: 62 --RLQSSH-----------------AEGQKRHPRVLVLTPTRELAAQVHESVRDYGRFLP 102
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
S++ GGVS + + +++ATP +L H++ R++ + +VLDEAD + D
Sbjct: 103 FRSAVIFGGVSINPQKQKLIKGVDVVVATPGRLLDHLQQRSIDLSKVEVLVLDEADRMLD 162
Query: 323 RGFGPEISKILNPL 336
GF +I K+LN +
Sbjct: 163 MGFIRDIRKVLNAI 176
>gi|390348110|ref|XP_001199247.2| PREDICTED: probable ATP-dependent RNA helicase DDX28-like
[Strongylocentrotus purpuratus]
Length = 568
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 15/193 (7%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++FQ+L L +IK ++ M + P+ IQ IP +L GK+ + ++ +GSG+TL YLLPL+
Sbjct: 147 NTFQDLKLHPSIIKGLDVMDIVTPTSIQLSAIPVILRGKNTLCAAETGSGKTLTYLLPLM 206
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q +L EE + +P PR +VL E Q + +AK ++
Sbjct: 207 Q---RLVEE------------SKQTDNFTAEPGLPRGVVLVPVGELVHQVWEVAKVLADS 251
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
A L +G S K+LE + ++I+TP ++ + S D + ++V+DE+DT+
Sbjct: 252 AGLSVQYIDGETSLKSLEKRLSLSTDIIISTPGPIINAVRQGYGSLDCVSHIVIDESDTM 311
Query: 321 FDRGFGPEISKIL 333
D F + KIL
Sbjct: 312 LDDSFIQQTLKIL 324
>gi|297539139|ref|YP_003674908.1| DEAD/DEAH box helicase domain-containing protein [Methylotenera
versatilis 301]
gi|297258486|gb|ADI30331.1| DEAD/DEAH box helicase domain protein [Methylotenera versatilis
301]
Length = 532
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 19/196 (9%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E + +F ELGL +++A+ G P+ IQ IP VL+G ++ + +G+G+T + L
Sbjct: 4 ETILNFNELGLSEPILRAINDAGYTTPTPIQSKAIPQVLSGGDLLAGAQTGTGKTAGFTL 63
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
P++ + SQ + L + PR ++L T E A Q K
Sbjct: 64 PILHLLSQ-------------------KPLSEVVKGRPRCLMLTPTRELAAQIEESVKVY 104
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
L S++ GGV++ P+ +L+ATP +L H +NV I +VLDEA
Sbjct: 105 GKFLPLTSTVIFGGVNANPQIARLKKPLDILVATPGRLLDHANQKNVDLSGIEILVLDEA 164
Query: 318 DTLFDRGFGPEISKIL 333
D + D GF +I KIL
Sbjct: 165 DRMLDMGFIRDIKKIL 180
>gi|195389156|ref|XP_002053243.1| GJ23450 [Drosophila virilis]
gi|194151329|gb|EDW66763.1| GJ23450 [Drosophila virilis]
Length = 829
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 118/245 (48%), Gaps = 40/245 (16%)
Query: 128 EREKSSGSNAEVVSS---------FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG 178
E+ +SG N +++ + FQ LGL E++K + K G VP+ IQ IP +L G
Sbjct: 16 EQNGTSGGNDDILKNKPKSKKSGGFQSLGLGFELLKGITKRGYKVPTPIQRKTIPLILEG 75
Query: 179 KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238
+ VV + +GSG+T +L+P+ + ++ RR+ P K RA+
Sbjct: 76 RDVVAMAKTGSGKTACFLIPMFE-----------------KLQRRE----PTKGA--RAL 112
Query: 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298
+L T E A Q + K + L + + GG S + + +++ATP L
Sbjct: 113 ILSPTRELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHL 172
Query: 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
+ ++ + I YVV DEAD LF+ GFG ++++ L+ L S Q ++ +A +
Sbjct: 173 CVEMDLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSR--------QMVMFSATLP 224
Query: 359 EMLGE 363
++L E
Sbjct: 225 KLLVE 229
>gi|344923278|ref|ZP_08776739.1| superfamily II DNA/RNA helicase [Candidatus Odyssella
thessalonicensis L13]
Length = 413
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 26/197 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF E+GL +E+ + V K+G P+ IQ IP L GK ++ + +G+G+T A+LLP ++
Sbjct: 2 SFSEIGLTSELAETVAKLGYDCPTPIQNTAIPLALQGKDILACAQTGTGKTAAFLLPTIE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ H L P A++L T E A Q + F+S+ A
Sbjct: 62 IIKHSRSRHRL----------------------PSAVILAPTRELATQVYD--NFLSYTA 97
Query: 262 --RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GG E + + +LIATP ++ E + +++ VV+DEAD
Sbjct: 98 GTNLKAISVVGGEIISIQERILKKGVDILIATPGRLIDLFERGKLILTNVKVVVIDEADR 157
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF PE+ KI + L
Sbjct: 158 MLDMGFMPEVDKIFSFL 174
>gi|448241070|ref|YP_007405123.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
gi|445211434|gb|AGE17104.1| ATP-dependent RNA helicase [Serratia marcescens WW4]
Length = 459
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 23/197 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISH 259
+ S+ D P+K P RA++L T E A Q G ++ + H
Sbjct: 62 LLSKHDH--------------------PVKGRRPVRALILTPTRELAAQIGENVDAYSKH 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
RL S + GGVS + +L+ATP +L V I +VLDEAD
Sbjct: 102 L-RLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADR 160
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF +I ++L L
Sbjct: 161 MLDMGFIHDIRRVLAKL 177
>gi|254247597|ref|ZP_04940918.1| Helicase [Burkholderia cenocepacia PC184]
gi|124872373|gb|EAY64089.1| Helicase [Burkholderia cenocepacia PC184]
Length = 521
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 32 VDATFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 91
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 92 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 133
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 134 AKHTP-LRSAVVFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 192
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 193 ADRMLDMGFLPDLQRILN 210
>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
WM1]
Length = 471
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 103/201 (51%), Gaps = 21/201 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++L + ++IKA+EK +P+ IQ IP +L+G+ ++ + +G+G+T A+ +P +Q+
Sbjct: 3 FKDLNIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTIQL 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ E H G Q +R A+++ T E A Q +
Sbjct: 63 LREEKESH-----GAKQNIR--------------ALIVTPTRELALQIYESFNTYGKFTD 103
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GGVS K E+ + +L+ATP +L I+ + V+ D I+ ++LDEAD + D
Sbjct: 104 LKCCVVFGGVSQKPQEEKLKQRVDILVATPGRLLALIDQKIVNIDHIKILILDEADRMLD 163
Query: 323 RGFGPEISKIL--NPLKDSAL 341
GF ++ KI+ PLK L
Sbjct: 164 MGFIHDVKKIIARTPLKKQTL 184
>gi|145352024|ref|XP_001420359.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580593|gb|ABO98652.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 560
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 31/222 (13%)
Query: 142 SFQELGLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
SF+E GL A M+K + E +G P+ +Q IP +L G+ V++ + +GSG+TL+Y+ PL
Sbjct: 1 SFEECGLPASMVKHLMENVGFGAPTAVQAKTIPRLLAGRDVLVRAETGSGKTLSYIAPL- 59
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-- 258
YS++ GIT + R+E R +VL T E A Q A+ +
Sbjct: 60 --YSKIG--------GITPRVTREEG--------TRGLVLVPTRELATQVEDTARRVGRP 101
Query: 259 -HCARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIE-DRNVSCDDIRYVVLD 315
H S M G ++A E + +LIATP +L H+ + + D++R++VLD
Sbjct: 102 FHWVVTSSIM---GGENRAKEKARLRKGVSLLIATPGRLLDHLRMTESFNVDNLRWLVLD 158
Query: 316 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
EAD L D GF +++ ILN + ++ G T L++A +
Sbjct: 159 EADRLLDLGFEEDLNAILNEI---GRRTEGASLCTALLSATL 197
>gi|254487565|ref|ZP_05100770.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
gi|214044434|gb|EEB85072.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. GAI101]
Length = 533
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 22/191 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +L L +++KA+E+ G P+ IQ IP L GK V+ + +G+G+T ++ LP++
Sbjct: 4 FSDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPMIT- 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
ML R A M PR++VLC T E A Q +
Sbjct: 63 -----------------MLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHLN 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L ++ GGVS + + + + +LIATP ++ H E + D++ +V+DEAD + D
Sbjct: 102 LTKALLIGGVSFGEQDKLIDKGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEADRMLD 161
Query: 323 RGFGPEISKIL 333
GF P+I +I
Sbjct: 162 MGFIPDIERIF 172
>gi|42522889|ref|NP_968269.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
gi|39574085|emb|CAE79262.1| RNA helicase [Bdellovibrio bacteriovorus HD100]
Length = 460
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 128/249 (51%), Gaps = 29/249 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F + L ++K ++ + + P++IQ IP +++ ++VV S +GSG+TLAY+LP+
Sbjct: 53 MNTFADFELLPSLLKTLKTLKISKPTDIQKQAIPLIMSHQAVVGVSETGSGKTLAYVLPI 112
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAKFIS 258
+ L+E P+K + PRA+V+ + E +Q + K ++
Sbjct: 113 LNYLKSLEESGD-----------------PVKEENAPRAVVMVPSRELGEQVAKVFKSMT 155
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H RL GG+S + ++ +L+ATP ++Q + +S D+R+++ DEAD
Sbjct: 156 HDTRLRVRPALGGMSLEQARRNTSGAFEVLLATPGRLVQMLNKDLISLRDVRFLIFDEAD 215
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM---ECLERD 375
+ D+GF P+ ++I++ + L +A +++ + + ++ L E +
Sbjct: 216 QMLDQGFLPDTNRIVDCCPEDV--------NLALFSATVSKTVEKLMNDLFAKAEVIRSK 267
Query: 376 NAGKVTAML 384
N+GKV + L
Sbjct: 268 NSGKVVSTL 276
>gi|344167813|emb|CCA80061.1| ATP-dependent RNA helicase hydrolase [blood disease bacterium R229]
Length = 543
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL- 60
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H L V ++ P+ RA+VL T E A Q +
Sbjct: 61 --------HRLSAVQPNKVHTSHGMRYPI-----RALVLTPTRELAAQVEESVRAYGKYL 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV D + +++ATP +L H+ R + I +VLDEAD +
Sbjct: 108 PLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRML 167
Query: 322 DRGFGPEISKILN 334
D GF +I KILN
Sbjct: 168 DMGFIHDIRKILN 180
>gi|300692445|ref|YP_003753440.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
gi|299079505|emb|CBJ52183.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum PSI07]
Length = 549
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL- 60
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H L V ++ P+ RA+VL T E A Q +
Sbjct: 61 --------HRLSAVQPNKVHTSHGMRYPI-----RALVLTPTRELAAQVEESVRAYGKYL 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV D + +++ATP +L H+ R + I +VLDEAD +
Sbjct: 108 PLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRML 167
Query: 322 DRGFGPEISKILN 334
D GF +I KILN
Sbjct: 168 DMGFIHDIRKILN 180
>gi|254476293|ref|ZP_05089679.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
gi|214030536|gb|EEB71371.1| ATP-dependent RNA helicase RhlE [Ruegeria sp. R11]
Length = 501
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q +
Sbjct: 61 IT------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L ++ GGVS K + + + + +LIATP +L H E + D++ +V+DEAD
Sbjct: 99 HLNLTKALLIGGVSFKEQDALIDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADR 158
Query: 320 LFDRGFGPEISKIL 333
+ D GF P+I +I
Sbjct: 159 MLDMGFIPDIERIF 172
>gi|107023254|ref|YP_621581.1| DEAD/DEAH box helicase [Burkholderia cenocepacia AU 1054]
gi|116690337|ref|YP_835960.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|170733675|ref|YP_001765622.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|105893443|gb|ABF76608.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648426|gb|ABK09067.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
gi|169816917|gb|ACA91500.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 520
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 21/198 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F + GL +++KA+ + G P+ IQ IP VL G+ V+ ++ +G+G+T ++ LP
Sbjct: 31 VDATFDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLP 90
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKF 256
++Q + + + + P + HP RA++L T E ADQ ++ +
Sbjct: 91 IIQRL----------------LPQANTSASPAR--HPVRALILTPTRELADQVAANVHAY 132
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H L S++ GGV + +LIATP +L H++ + + ++ +VLDE
Sbjct: 133 AKHTP-LRSAVVFGGVDMNPQSAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDE 191
Query: 317 ADTLFDRGFGPEISKILN 334
AD + D GF P++ +ILN
Sbjct: 192 ADRMLDMGFLPDLQRILN 209
>gi|343512818|ref|ZP_08749935.1| ATP-dependent RNA helicase [Vibrio scophthalmi LMG 19158]
gi|343515804|ref|ZP_08752853.1| ATP-dependent RNA helicase [Vibrio sp. N418]
gi|342794506|gb|EGU30271.1| ATP-dependent RNA helicase [Vibrio scophthalmi LMG 19158]
gi|342797618|gb|EGU33262.1| ATP-dependent RNA helicase [Vibrio sp. N418]
Length = 419
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 18/194 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F LGL+ +++ V ++G P+E+Q IP VL GK V+ + +G+G+T A+ LP++Q
Sbjct: 5 FANLGLEPTLVETVSQLGFNSPTEVQLHAIPPVLEGKDVLAGAQTGTGKTAAFGLPIIQR 64
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
S D Q R D + A+VL T E A Q F +
Sbjct: 65 LSNQDYSRDPQ--------RNDVS----------ALVLVPTRELAQQVFDNLTAYAVNTS 106
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L GG S + +LIATP +L H+ +NVS + +VLDEAD + D
Sbjct: 107 LKIVTAYGGTSMNVQTRNLHQGCDILIATPGRLLDHMHCKNVSLQRTQTLVLDEADRMLD 166
Query: 323 RGFGPEISKILNPL 336
GF P++ +IL +
Sbjct: 167 MGFWPDLKRILGKM 180
>gi|326436974|gb|EGD82544.1| DEAD/DEAH box helicase [Salpingoeca sp. ATCC 50818]
Length = 857
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 22/207 (10%)
Query: 141 SSFQELGLKAEMIKAVE-KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F EL L + K + ++ L ++ Q + IP +L G+ V+L S +G+G+TLAY +P+
Sbjct: 15 TRFSELALAERLQKCIATRLKLEEMTKPQQLAIPLMLKGEDVMLRSATGTGKTLAYAVPI 74
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FIS 258
+ L + ++R + P A+VLC T E A Q F + K +S
Sbjct: 75 IN-----------DLQNLKFRVKRSDG--------PLAVVLCPTRELAKQSFEVIKQLLS 115
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEA 317
+ + GG K+ + I +LIATP +L HIE +++ IR++VLDEA
Sbjct: 116 SSVWIVPGLLTGGEKKKSQKASIRKGINVLIATPGRLLDHIESTQSLQLKSIRWLVLDEA 175
Query: 318 DTLFDRGFGPEISKILNPLKDSALKSN 344
D L D GF ++KI+ + D+ K+N
Sbjct: 176 DRLMDEGFEKSVTKIVKAMDDARSKTN 202
>gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
Length = 545
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 68 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 127
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPM-HPRAIVLCTTEESADQGFHMAK-FISH 259
++QL + Q + + D + +P+ P +VL T E A Q A + H
Sbjct: 128 RFAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 187
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 188 LKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 246
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ +S QT+L +A + +G S L++ ER
Sbjct: 247 RMLDMGFIEDIETIVAATPESR--------QTMLFSATLDGKIGSLTSRLLKDPER 294
>gi|84686458|ref|ZP_01014352.1| ATP-dependent RNA helicase RhlE [Maritimibacter alkaliphilus
HTCC2654]
gi|84665641|gb|EAQ12117.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2654]
Length = 474
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KAVE+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLSPKVLKAVEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ ML R A M PR++VLC T E A Q +
Sbjct: 61 IT------------------MLARGRARARM----PRSLVLCPTRELAAQVAENFDTYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HVKLTKALLIGGVSFKEQDQLIDRGVDVLIATPGRLLDHFERGKLLLTGVQVMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I
Sbjct: 159 MLDMGFIPDIERIFG 173
>gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
Length = 441
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E L ++KA+++ G P+ +Q IP VLNG ++ S+ +G+G+T A++LP +Q
Sbjct: 2 SFEEFNLHPIILKAIQQCGYTTPTGVQAEAIPKVLNGSDLIASANTGTGKTAAFVLPALQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ ++EH ++ + P +VL T E A+Q +
Sbjct: 62 RLT--NKEHRVK----------------KQNGKPSVLVLTPTRELANQISQAIRNYGKNL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R S+ GG+ + + PI +++ATP +L +E RN+ + +VLDEAD +
Sbjct: 104 RFFSTNLVGGMPYEPQLRALSRPIDIVVATPGRLLDLVERRNIDLSGVNMLVLDEADRML 163
Query: 322 DRGFGPEISKI 332
D GF E++KI
Sbjct: 164 DMGFVDEVNKI 174
>gi|344173743|emb|CCA88920.1| ATP-dependent RNA helicase hydrolase [Ralstonia syzygii R24]
Length = 549
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL- 60
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H L V ++ P+ RA+VL T E A Q +
Sbjct: 61 --------HRLSAVQPNKVHTSHGMRYPI-----RALVLTPTRELAAQVEESVRAYGKYL 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV D + +++ATP +L H+ R + I +VLDEAD +
Sbjct: 108 PLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRML 167
Query: 322 DRGFGPEISKILN 334
D GF +I KILN
Sbjct: 168 DMGFIHDIRKILN 180
>gi|453062686|gb|EMF03676.1| ATP-dependent RNA helicase RhlE [Serratia marcescens VGH107]
Length = 457
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 23/197 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEIVRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISH 259
+ S+ D P+K P RA++L T E A Q G ++ + H
Sbjct: 62 LLSKHDH--------------------PVKGRRPVRALILTPTRELAAQIGENVDAYSKH 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
RL S + GGVS + +L+ATP +L V I +VLDEAD
Sbjct: 102 L-RLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADR 160
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF +I ++L L
Sbjct: 161 MLDMGFIHDIRRVLAKL 177
>gi|430811708|emb|CCJ30841.1| unnamed protein product [Pneumocystis jirovecii]
Length = 610
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 31/231 (13%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
EK+ + E V SF +L L ++KA+E +G P+ IQ IP L GK +V S+ +GS
Sbjct: 160 EKNDINMQEHVLSFSQLNLSRPILKALESIGFDKPTTIQSKAIPIALLGKDIVGSAVTGS 219
Query: 190 GRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
G+T A+++P+++ ++L R P K R ++LC T E A Q
Sbjct: 220 GKTAAFVIPVLE-----------------RLLYR-----PKKIAVTRVLILCPTRELAIQ 257
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDD 308
+++ K ++ + + + GG+S K E ++IATP + H+ + S +
Sbjct: 258 CYNVTKKLATYTDIKTCICTGGLSLKIQEAELRKRPDIVIATPGRFIDHVRNSYGFSPNS 317
Query: 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
I +V+DEAD + D GF E+++I+ S QTIL +A + +
Sbjct: 318 IEIIVIDEADRILDEGFQDELNEIIKICPKSR--------QTILFSATMTD 360
>gi|159043882|ref|YP_001532676.1| DEAD/DEAH box helicase [Dinoroseobacter shibae DFL 12]
gi|157911642|gb|ABV93075.1| DEAD/DEAH box helicase domain protein [Dinoroseobacter shibae DFL
12]
Length = 493
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+ + G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ MLR+ A M PR++VL T E A Q +
Sbjct: 61 IT------------------MLRKGRARARM----PRSLVLAPTRELAAQVAENFDIYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + D++ +V+DEAD
Sbjct: 99 HTKLTKALLIGGVSFKEQDLLIDKGVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADR 158
Query: 320 LFDRGFGPEISKIL 333
+ D GF P+I KI
Sbjct: 159 MLDMGFIPDIEKIF 172
>gi|390341643|ref|XP_784918.3| PREDICTED: probable ATP-dependent RNA helicase DDX31-like
[Strongylocentrotus purpuratus]
Length = 718
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 31/231 (13%)
Query: 136 NAEVVSS---FQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
N E + S F EL L + MI +EK +G + +Q IP +L+G+ ++ S +G+G+
Sbjct: 105 NKEAIFSSTQFSELPLHSFMISNIEKNLGFSQMTTVQQRAIPTLLHGQDTLIKSQTGTGK 164
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH-PRAIVLCTTEESADQG 250
TLAY +P+VQ QL G+ ++R +H P A++L T E A Q
Sbjct: 165 TLAYAVPVVQ-----------QLQGLQPKVQR---------LHGPYALILVPTRELACQS 204
Query: 251 FH-MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN-VSCDD 308
F + K + + + GG K+ + I +L++TP ++ HI ++
Sbjct: 205 FETLVKLVKPFHWIVPGVLMGGEKKKSEKGRIRKGINILVSTPGRLVDHINTTEALTFSR 264
Query: 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
+R+V+LDEAD L D GF +++ ILN + + QT+LV+A ++E
Sbjct: 265 VRWVILDEADRLLDLGFEKDVTTILNAINEQCQNQK----QTVLVSATLSE 311
>gi|387902585|ref|YP_006332924.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577477|gb|AFJ86193.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 516
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E++ A+E G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 36 TFASLGLSPEIVSALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 95
Query: 202 VYSQLDEEHHLQLVGITQMLRRD-EALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISH 259
++QL + Q + + D A P P +VL T E A Q A + H
Sbjct: 96 RFAQLQKSQAQQPRAPREPNQGDRRARRPQPVARPSLLVLTPTRELAMQVTTAATTYGKH 155
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 156 LRRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 214
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ S QT+L +A + +G S L+ ER
Sbjct: 215 RMLDMGFIDDIETIVAATPASR--------QTMLFSATLDGKIGSLTSRLLNNPER 262
>gi|312882439|ref|ZP_07742180.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369839|gb|EFP97350.1| ATP-dependent RNA helicase RhlE [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 452
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F LGL A ++KA+E++G PS IQ IPAVL+GK V+ ++ +G+G+T + LP+++
Sbjct: 2 GFTSLGLSAPILKAIEELGYDTPSPIQKQAIPAVLSGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+LD + K H RA++L T E A Q S
Sbjct: 62 ---RLDNNQRV------------------KGNHVRALILTPTRELAAQIQENVFKYSRHQ 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
RL S + GGV +L+ATP ++ + + + D + +VLDEAD +
Sbjct: 101 RLTSQVVFGGVKINPQMMKLRKGCDVLVATPGRLMDLYQQKAIKFDQLEVLVLDEADRML 160
Query: 322 DRGFGPEISKILNPL 336
D GF +I KILN L
Sbjct: 161 DMGFIHDIRKILNLL 175
>gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 516
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E++ A+E G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 36 TFASLGLSPEIVSALEAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 95
Query: 202 VYSQLDEEHHLQLVGITQMLRRD-EALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISH 259
++QL + Q + + D A P P +VL T E A Q A + H
Sbjct: 96 RFAQLQKSQAQQPRAPREPNQGDRRARRPQPVARPSLLVLTPTRELAMQVTTAATTYGKH 155
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 156 LRRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 214
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ S QT+L +A + +G S L+ ER
Sbjct: 215 RMLDMGFIDDIETIVAATPASR--------QTMLFSATLDGKIGSLTSRLLNNPER 262
>gi|421782261|ref|ZP_16218719.1| ATP-dependent RNA helicase [Serratia plymuthica A30]
gi|407755624|gb|EKF65749.1| ATP-dependent RNA helicase [Serratia plymuthica A30]
Length = 454
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 23/197 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISH 259
+ S+ D P+K P RA++L T E A Q G ++ + H
Sbjct: 62 LLSKHDH--------------------PIKGRRPVRALILTPTRELAAQIGENVEAYSKH 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
RL S + GGVS + +L+ATP +L V I +VLDEAD
Sbjct: 102 L-RLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADR 160
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF +I ++L L
Sbjct: 161 MLDMGFIHDIRRVLAKL 177
>gi|381160579|ref|ZP_09869811.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
gi|380878643|gb|EIC20735.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
Length = 438
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL A++++AV G P+ IQ IPA+L G+ V+ + +G+G+T A+ LPL+Q
Sbjct: 2 SFSDLGLSAKLLRAVTARGYTEPTPIQNQAIPAILAGRDVMAGAQTGTGKTAAFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
SQ ++ + PRA+VL T E A Q
Sbjct: 62 RLSQSGQQAS------------------ARSPQPRALVLTPTRELAAQVGESVSAYGQYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L + GGV + +L+ATP +L H+ N+ + +VLDEAD +
Sbjct: 104 PLRALQIFGGVGMGPQITALRRGVDILVATPGRLLDHVGQGNLDLGHVELLVLDEADRML 163
Query: 322 DRGFGPEISKIL 333
D GF P I ++L
Sbjct: 164 DMGFMPAIRRVL 175
>gi|270260820|ref|ZP_06189093.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
gi|270044304|gb|EFA17395.1| ATP-dependent RNA helicase [Serratia odorifera 4Rx13]
Length = 452
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 23/197 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISH 259
+ S+ D P+K P RA++L T E A Q G ++ + H
Sbjct: 62 LLSKHDH--------------------PIKGRRPVRALILTPTRELAAQIGENVEAYSKH 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
RL S + GGVS + +L+ATP +L V I +VLDEAD
Sbjct: 102 L-RLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADR 160
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF +I ++L L
Sbjct: 161 MLDMGFIHDIRRVLAKL 177
>gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 442
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 23/193 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F ELGL+AE+++AV + G PS IQ IP VL G ++ + +G+G+T + LPL+Q
Sbjct: 2 TFNELGLRAELLRAVSESGYSQPSPIQSKAIPVVLQGGDLLAGAQTGTGKTAGFALPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
+L E+ P + P RA+VL T E A Q +
Sbjct: 62 ---RLSEK-------------------PAQKSRPIRALVLTPTRELAAQVEASFRLYGKH 99
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L +++ GGVS + + +L+ATP +L H+ + + + +VLDEAD +
Sbjct: 100 LPLRTTVVFGGVSIRPQITTLRQGVDILVATPGRLLDHVSQKTIDLSKVEMLVLDEADRM 159
Query: 321 FDRGFGPEISKIL 333
D GF +I KIL
Sbjct: 160 LDMGFLRDIRKIL 172
>gi|432879043|ref|XP_004073424.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Oryzias
latipes]
Length = 614
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 35/226 (15%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++K ++K G+ P+ IQ GIP VL+G+ ++ + +GSG+TL + LP+
Sbjct: 172 IKSFREMKFPPAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTLPI 231
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++ +
Sbjct: 232 IMF--ALEQEKRLPF---------------FKREGPYGLIICPSRELARQTHSIIEY--Y 272
Query: 260 CA--------RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
C +L +++ GG+S K +V + M++ATP ++ ++ + VS D RY
Sbjct: 273 CKLLEEEGAPQLRTALCIGGMSVKEQMEVVKHGVHMMVATPGRLMDLLQKKMVSLDICRY 332
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+ LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 333 LALDEADRMIDMGFEEDIRTIFSYFK-------GQR-QTLLFSATM 370
>gi|324503749|gb|ADY41623.1| ATP-dependent RNA helicase DDX54 [Ascaris suum]
Length = 799
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 32/219 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
+Q LGL + KA+EK G P+ IQ IP +++GK VV S +GSG+T A+++P++
Sbjct: 40 WQALGLDHAVFKAIEKKGYRQPTPIQRKAIPLIIDGKDVVAMSRTGSGKTAAFVVPML-- 97
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
Q L+R E RA+++ T E A Q F K +
Sbjct: 98 ----------------QKLKRREV------NGTRALLIAPTRELALQTFKFTKELGRFTG 135
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG S + + ++IATP +L I + N+ ++Y+V DEAD LF+
Sbjct: 136 LRCAALVGGDSIEEQFGAIHEKPDIIIATPGRLLHLIIEMNLRLTTVQYLVFDEADRLFE 195
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
GF ++ +IL L D+ QT+L +A + +ML
Sbjct: 196 MGFSEQLHEILKRLPDNR--------QTLLFSATLPKML 226
>gi|357474503|ref|XP_003607536.1| hypothetical protein MTR_4g079320 [Medicago truncatula]
gi|355508591|gb|AES89733.1| hypothetical protein MTR_4g079320 [Medicago truncatula]
Length = 787
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 34/223 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ LGL ++ +++ G VP+ IQ +P +L+G VV + +GSG+T A+L+P++
Sbjct: 20 FETLGLNRDVFSGIKRKGYKVPTPIQRKTMPLILSGIDVVAMARTGSGKTAAFLVPMLHR 79
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+Q H+ G+ R ++L T + A Q K + H
Sbjct: 80 LNQ-----HVPQGGV------------------RGLILSPTRDLAQQTLKFTKELGHFTD 116
Query: 263 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTL 320
L S+ GG S ++ E+++ P ++IATP ++ H+ E ++S + YVV DEAD L
Sbjct: 117 LRVSLLVGGDSMESQFEELAQNP-DIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCL 175
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
F GF ++ +IL L G+ QT+L +A + L E
Sbjct: 176 FGMGFAEQLHQILAQL--------GENRQTLLFSATLPSALAE 210
>gi|187927522|ref|YP_001898009.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|404394476|ref|ZP_10986280.1| hypothetical protein HMPREF0989_04985 [Ralstonia sp. 5_2_56FAA]
gi|187724412|gb|ACD25577.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|404279086|gb|EJZ44455.1| hypothetical protein HMPREF0989_04985 [Ralstonia sp. 5_2_56FAA]
Length = 560
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 14/195 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S V Q +R P+ RA+VL T E A Q +
Sbjct: 62 RLSAAQPNK----VQTPQGMR-----FPI-----RALVLTPTRELAAQVEESVRAYGKYL 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV D + +++ATP +L H+ R + I +VLDEAD +
Sbjct: 108 PLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRML 167
Query: 322 DRGFGPEISKILNPL 336
D GF +I KILN L
Sbjct: 168 DMGFIHDIRKILNIL 182
>gi|33594279|ref|NP_881923.1| ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|384205577|ref|YP_005591316.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|408417408|ref|YP_006628115.1| ATP-dependent RNA helicase [Bordetella pertussis 18323]
gi|33564354|emb|CAE43658.1| putative ATP-dependent RNA helicase [Bordetella pertussis Tohama I]
gi|332383691|gb|AEE68538.1| putative ATP-dependent RNA helicase [Bordetella pertussis CS]
gi|401779578|emb|CCJ65116.1| putative ATP-dependent RNA helicase [Bordetella pertussis 18323]
Length = 477
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 23/211 (10%)
Query: 131 KSSGSNAEVVS----SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSG 186
+S+ S+A V +F + GL ++K + G P+ IQ IP V+ G+ V+ ++
Sbjct: 3 ESTSSDAPVTDAPTRTFADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQ 62
Query: 187 SGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEE 245
+G+G+T A+ LP++ H L + T + P + HP RA++L T E
Sbjct: 63 TGTGKTAAFTLPIL---------HRLMPLANT-------SASPAR--HPVRALILTPTRE 104
Query: 246 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305
ADQ + K S L S++ GGV ++ +L+ATP +L H+E +NV+
Sbjct: 105 LADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVN 164
Query: 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
+ +VLDEAD + D GF P++ +I+ L
Sbjct: 165 LSQVGILVLDEADRMLDMGFLPDLERIIRLL 195
>gi|118594179|ref|ZP_01551526.1| putative ATP-dependent RNA helicase protein [Methylophilales
bacterium HTCC2181]
gi|118439957|gb|EAV46584.1| putative ATP-dependent RNA helicase protein [Methylophilales
bacterium HTCC2181]
Length = 427
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 95/193 (49%), Gaps = 22/193 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SFQ L A ++KA+++ G P+ IQ IP ++ K V+ S+ +G+G+T A++LP++
Sbjct: 2 SFQTFNLDASILKAIQEAGYDQPTPIQTKSIPEIMLNKHVLASAQTGTGKTAAFVLPILD 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
++ E PR +++ T E A Q K S
Sbjct: 62 KLTKNRSEGR----------------------GPRVLIVSPTRELATQITDSIKKYSRYL 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R++S GG+S + + PI +L+ATP +L + + ++ + ++LDEAD +
Sbjct: 100 RINSITITGGISYGLQNRMFSKPIDILVATPGRLLDLYQQKKINFKGLEVMILDEADRML 159
Query: 322 DRGFGPEISKILN 334
D GF P+I KI N
Sbjct: 160 DMGFVPDIRKIYN 172
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 19/196 (9%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SF LGL +++A+ +G P+ IQ IP VL G+ ++ ++ +G+G+T + LP++
Sbjct: 13 TSFSGLGLADPLLRALADVGYTNPTPIQAKAIPVVLTGRDLLAAAQTGTGKTAGFTLPIL 72
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q ++L D + KP PR ++L T E Q K +
Sbjct: 73 Q-----------------RLL--DNPMQTRKPGRPRCLILTPTRELTAQVEESVKAYAKY 113
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R+ S + GGVS P+ +L+ATP +L H++ V + VLDEAD +
Sbjct: 114 TRIRSVLIFGGVSINPQIQALRQPVDILVATPGRLLDHVQQGTVDLSGVEIFVLDEADRM 173
Query: 321 FDRGFGPEISKILNPL 336
D GF +I +++ L
Sbjct: 174 LDMGFIHDIRRVIAKL 189
>gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
Length = 524
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E++ A+E G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 39 SFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 98
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPM-HPRAIVLCTTEESADQGFHMAK-FISH 259
++QL + Q + D +P+ P +VL T E A Q A + H
Sbjct: 99 RFAQLQKTQAQQPRAPREPQSADRRQRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 158
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 159 LRRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 217
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ S QT+L +A + +G S L++ ER
Sbjct: 218 RMLDMGFIDDIETIVAATPASR--------QTMLFSATLDGKIGSLTSRLLKDPER 265
>gi|195381768|ref|XP_002049617.1| GJ21693 [Drosophila virilis]
gi|194144414|gb|EDW60810.1| GJ21693 [Drosophila virilis]
Length = 784
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 34/227 (14%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E+++SF ++ L +++A+ +G P+ IQ IP L G+ + + +G+G+T AY+L
Sbjct: 154 ELITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYML 213
Query: 198 PLVQ--VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
P V+ +Y L+ + IT R +VL T E Q + + K
Sbjct: 214 PTVERLLYRPLNNK------AIT-----------------RVLVLVPTRELGAQVYQVTK 250
Query: 256 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVL 314
+ +D + GG+ KA E V ++IATP ++ HI++ + S D I ++L
Sbjct: 251 QLCQFTSIDVGLAIGGLDVKAQETVLRQNPDIVIATPGRLIDHIKNTPSFSLDSIEVLIL 310
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
DEAD + D F ++ +I+N S K+ QT+L +A ++E +
Sbjct: 311 DEADRMLDEYFAEQMKEIIN----SCCKTR----QTMLFSATMSEQV 349
>gi|344338388|ref|ZP_08769320.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
gi|343801670|gb|EGV19612.1| DEAD/DEAH box helicase domain protein [Thiocapsa marina 5811]
Length = 429
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 24/196 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+A++++AV P+ IQ IP +L G ++ + +G+G+T A++LPL+Q
Sbjct: 2 SFDSLGLQADLLRAVATQRYARPTPIQLQAIPEILAGHDLLAGAQTGTGKTAAFVLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHC 260
+L E+ H Q HPRA++L T E A Q G + + H
Sbjct: 62 ---RLSEKGHPQ-------------------RHPRALILTPTRELAAQVGERVHAYGLHL 99
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GGV + + + +LIATP +L H R V + +VLDEAD +
Sbjct: 100 P-LRSAIVFGGVGMQPQVNQLQRGVDVLIATPGRLLDHAGRRTVDLSRVEILVLDEADRM 158
Query: 321 FDRGFGPEISKILNPL 336
D GF +I +I+ L
Sbjct: 159 LDMGFIHDIRRIIQLL 174
>gi|387128744|ref|YP_006297349.1| ATP-dependent RNA helicase SrmB [Methylophaga sp. JAM1]
gi|386275806|gb|AFI85704.1| ATP-dependent RNA helicase SrmB [Methylophaga sp. JAM1]
Length = 298
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 111/217 (51%), Gaps = 30/217 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +L L E+I AV G P+E+Q + IPA+L G+ V+ + +G+G+T A++LP++Q
Sbjct: 2 TFDDLFLDDELIAAVRDSGFEKPTEVQQLAIPALLAGQDVLACAATGTGKTAAFILPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L++E H + D+A R ++L T E A Q H+ +
Sbjct: 62 ---RLNDERH----------KHDQA---------RILILAPTRELAFQIQHVFHQLGKAF 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ +M GG S A + A ++IATP +L + D +V + V++DEAD +
Sbjct: 100 KPTIAMLTGGASPWAQVQHATAQCDIIIATPGRLLSLVNDESVDLSAVELVIIDEADRML 159
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
D G GP++ L +A+KS FQ L +A +A
Sbjct: 160 DMGQGPDVLMAL-----AAIKSK---FQAGLFSATLA 188
>gi|242081437|ref|XP_002445487.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
gi|241941837|gb|EES14982.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
Length = 666
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 125/253 (49%), Gaps = 34/253 (13%)
Query: 113 SPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI 172
SP +P++++ + S++ KS GS F+ +GL E+ + V G VP+ IQ +
Sbjct: 33 SPRRPKREKSAGGGSKKSKSGGSKKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKTM 92
Query: 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232
P +L G V + +GSG+T A+L+P++Q ++ RRD +
Sbjct: 93 PLILAGVDVAAMARTGSGKTAAFLVPMLQ-----------------RLRRRDPS------ 129
Query: 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIAT 291
RA++L T + A Q + L +S+ GG S ++ ED+S P ++IAT
Sbjct: 130 AGVRALILSPTRDLAMQTLKFCIQLGKFTDLRTSIIVGGDSMESQFEDLSECP-DIIIAT 188
Query: 292 PSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 350
P ++ H+ D ++++ + YVV DEAD+LF GF + IL L D+ QT
Sbjct: 189 PGRLMHHLNDVKDMTLRSVEYVVFDEADSLFSMGFAKHLHDILKKLSDTR--------QT 240
Query: 351 ILVTAAIAEMLGE 363
+L +A + L +
Sbjct: 241 LLFSATLPSALAD 253
>gi|148973895|ref|ZP_01811428.1| RhlE [Vibrionales bacterium SWAT-3]
gi|145965592|gb|EDK30840.1| RhlE [Vibrionales bacterium SWAT-3]
Length = 401
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL + ++KAV K G P+ IQ IP VL+GK+++ ++ +G+G+T +++LP++++
Sbjct: 3 FSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
S+ G TQ +R RA++L T E A Q K +
Sbjct: 63 LSK----------GETQRKKR-----------IRAVILTPTRELAVQVEQNIKKYAKFLN 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S GGVS + +D + +L+ATP ++ R V D++ +VLDEAD + D
Sbjct: 102 LTSLAMYGGVSYQHQKDRLIEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLD 161
Query: 323 RGFGPEISKILNPL 336
GF +I+KI+ L
Sbjct: 162 MGFIEDINKIIARL 175
>gi|254510324|ref|ZP_05122391.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
gi|221534035|gb|EEE37023.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
Length = 455
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 22/199 (11%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195
N ++ F EL L +++KA+E+ G P+ IQ IPA L G+ V+ + +G+G+T ++
Sbjct: 2 NRTYMTKFNELNLNPKVLKAIEEAGYESPTPIQEGAIPAALEGRDVLGIAQTGTGKTASF 61
Query: 196 LLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
LP++ +L R A M PR++VLC T E A Q
Sbjct: 62 TLPMIT------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFD 99
Query: 256 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315
+ +L ++ GGVS K + + + + +LIATP +L H E + ++ +V+D
Sbjct: 100 TYAKHLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVD 159
Query: 316 EADTLFDRGFGPEISKILN 334
EAD + D GF P+I +I +
Sbjct: 160 EADRMLDMGFIPDIERIFS 178
>gi|372489782|ref|YP_005029347.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356335|gb|AEV27506.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 473
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 21/228 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGLKAE+++A+ + G P+ IQ IPAVL G+ ++ + +G+G+T + LP++Q+
Sbjct: 3 FTDLGLKAEILRAIAEQGYTEPTPIQQQAIPAVLAGRDLMACAQTGTGKTAGFTLPILQL 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
SQ E+ L PR ++L T E A Q +
Sbjct: 63 LSQAQA---------------GESPLNRLARKPRVLILAPTRELALQVEESVRTYGQHLP 107
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S GGV + +L+A P +L HI R + I +VLDEAD + D
Sbjct: 108 LKSMSMFGGVGMNPQIAALKRGVDILVACPGRLLDHINQRTLDLSGIEILVLDEADRMLD 167
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
GF +I KIL + L NG+ Q +L +A ++ + E S +
Sbjct: 168 MGFIRDIRKIL-----ALLPPNGK-RQNLLFSATFSDEIKELARSFLH 209
>gi|257092638|ref|YP_003166279.1| DEAD/DEAH box helicase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257045162|gb|ACV34350.1| DEAD/DEAH box helicase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 481
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 16/192 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL AE+ +AV+ G P+ +Q IP +L G+ V+ + +G+G+T + LPL+Q
Sbjct: 4 SFALLGLSAELTRAVDDQGYSEPTPVQAQAIPVILAGRDVLAGAQTGTGKTAGFTLPLLQ 63
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ R A +P + RA++L T E A Q +
Sbjct: 64 RLAT----------------RAAPAGVPGQRSPVRALILTPTRELAAQIEESVRTYGKYL 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV+ D + +L+ATP +L H++ + VS + +VLDEAD +
Sbjct: 108 PLKSTLIYGGVNINPQIDALRRGVDILVATPGRLLDHLQQKTVSLAQVEILVLDEADRML 167
Query: 322 DRGFGPEISKIL 333
D GF +I +IL
Sbjct: 168 DMGFIRDIRRIL 179
>gi|440684899|ref|YP_007159694.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
gi|428682018|gb|AFZ60784.1| DEAD/DEAH box helicase domain protein [Anabaena cylindrica PCC
7122]
Length = 450
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 24/228 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E+I+AV + G P+ IQ IPAVL+G ++ + +G+G+T ++ LPL+
Sbjct: 2 SFSNLGLSNEIIRAVTERGYTKPTPIQMQAIPAVLSGGDLLAGAQTGTGKTASFTLPLLH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L + +++ I LP+ RA++L T E A Q
Sbjct: 62 ---KLSSDQNVKSSAI--------GWLPI-----RALILTPTRELAAQVEESVHDYGKYL 105
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS + + + +L+ATP +L H++ V+ I +VLDEAD +
Sbjct: 106 KLKSTVVFGGVSINPQKRQLKSGVDILVATPGRLLDHLQQGTVNLSRIEILVLDEADRML 165
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369
D GF +I +IL+ L Q +L A ++ + E S L+
Sbjct: 166 DMGFIRDIRRILSILPKQR--------QNLLFFATFSDKIKELASGLL 205
>gi|260914551|ref|ZP_05921019.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
gi|260631342|gb|EEX49525.1| ATP-dependent RNA helicase RhlE [Pasteurella dagmatis ATCC 43325]
Length = 442
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F + L ++KA+ K G P+ IQ IPA + + V+ S+ +G+G+T A+LLP +
Sbjct: 4 ATFDDFDLDPALLKALAKKGYTRPTAIQQETIPAAMEERDVLGSAPTGTGKTAAFLLPAI 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q HL RR KP PR +VL T E A Q A+ +S
Sbjct: 64 Q---------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAEELSAF 102
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L + GGV+ + +V N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 103 TNLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLLQYIKEENFDCRSVEILIFDEADRM 162
Query: 321 FDRGFGPEISKI 332
GFG + KI
Sbjct: 163 LQMGFGQDAEKI 174
>gi|320163598|gb|EFW40497.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1198
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 111/236 (47%), Gaps = 38/236 (16%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
A R+KSSG FQ LGL + +A+ K G VP+ IQ +P +L GK VV +
Sbjct: 249 AQNRKKSSGG-------FQSLGLSYNIFRAIGKKGYKVPTPIQRKTMPLLLEGKDVVAMA 301
Query: 186 GSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+GSG+T A+L+PL++ + H+ G RA++L T E
Sbjct: 302 RTGSGKTAAFLVPLLEKL-----QSHVPGTGC------------------RALILSPTRE 338
Query: 246 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305
A Q +S L + + GG S + + ++IATP L + + N+
Sbjct: 339 LAMQTHKFCNDLSSFTNLRTRLIVGGESLEQQFAAMHENPDIVIATPGRFLHVVMEMNLR 398
Query: 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
++YVV DEAD LF+ GF ++S++L L +G QT L +A + ML
Sbjct: 399 LQAVQYVVFDEADRLFEMGFAEQLSELLARLP--------EGRQTCLFSATLPRML 446
>gi|294142025|ref|YP_003558003.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293328494|dbj|BAJ03225.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 427
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 133/266 (50%), Gaps = 31/266 (11%)
Query: 127 SEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSG 186
SER S+ + F L L+ E+++ + ++G P+ IQ IPA+L G+ ++ +
Sbjct: 2 SERVDSAAKHG-----FSSLSLRPELLQVLTELGYTQPTPIQTQAIPAILAGQDIMAGAQ 56
Query: 187 SGSGRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+GSG+T A+ LP++ ++ +Q+ L++ EA RA+VL T E
Sbjct: 57 TGSGKTAAFALPILNKLTAQI-------------CLQKTEAQDSADKPAIRALVLTPTRE 103
Query: 246 SADQGFHMAKFISHC--ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN 303
A Q H F+ + ++ S++ GGVS A + A + +L+ATP +L H+ +
Sbjct: 104 LALQ-VH-GSFVKYAKLTQVKSALVYGGVSIDAQAQILAAGVDILVATPGRLLDHLRRGS 161
Query: 304 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
++ + + ++V DEAD + D GF EI I+ L + QT+L +A E +
Sbjct: 162 LNLNQLEFLVFDEADRMLDMGFKDEIDAIVKQLPKTR--------QTLLFSATFDESIYG 213
Query: 364 QLSSLMECLERDNAGKVTAMLLEMDQ 389
SL+ ++ G+ A +E+DQ
Sbjct: 214 LSQSLLRDPKQIEVGERNAAAVEIDQ 239
>gi|340386524|ref|XP_003391758.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like, partial
[Amphimedon queenslandica]
Length = 270
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 125/250 (50%), Gaps = 21/250 (8%)
Query: 170 VGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLP 229
+ IP + G +V+ ++ +GSG+T+AY+ PL+ DEE L G+ ++
Sbjct: 2 LAIPHITKGSNVLCAAETGSGKTIAYMAPLINRLK--DEEEQL---GVITRFKK------ 50
Query: 230 MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLI 289
PRA+V+ + + A+Q +AK SH ++ GG + +++ P+ +LI
Sbjct: 51 -----PRALVILPSRDLANQVLSVAKLFSHVVKIRIVAAIGGKKKRFIKEALTKPVDVLI 105
Query: 290 ATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNG---- 345
ATP +L+ + +S D+ ++VLDEAD+LFD+ F +L +K +K
Sbjct: 106 ATPDSLLKLKQQDRISFSDVSHLVLDEADSLFDQSFEDTTFNLLKMMKIREVKPKNYSDM 165
Query: 346 -QGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKK 404
+G Q +V+A I + L+ + +++ + ++ +L ++Q + + E + L
Sbjct: 166 REGAQVTVVSATITNRMLTSLTEKIPNIKKITSKQLHKILPNVEQKFIKVIAEHKAELLL 225
Query: 405 KVVEAMDSLH 414
KV+E + +
Sbjct: 226 KVLEGYSNTY 235
>gi|254508223|ref|ZP_05120347.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
gi|219548840|gb|EED25841.1| ATP-dependent RNA helicase SrmB [Vibrio parahaemolyticus 16]
Length = 403
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 21/187 (11%)
Query: 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLD 207
L ++ A+E+MG P++IQ IP L+G+ ++ S+ +G+G+T A++LP +Q
Sbjct: 3 LDPNLLLAIEEMGYDRPTQIQAEAIPQALDGRDILASAPTGTGKTAAFVLPALQ------ 56
Query: 208 EEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSM 267
+LQ RR KP R ++L T E A Q A+ ++ +L+
Sbjct: 57 ---YLQ-----DFPRR-------KPGPARILILTPTRELAMQVADQARALAKHTKLNIFT 101
Query: 268 ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP 327
GGV + D+ +++ATP ++++I C I ++VLDEAD + D GFGP
Sbjct: 102 ITGGVQYQEHADILGKTQDIVVATPGRLMEYINAERFDCRAIEWLVLDEADRMLDMGFGP 161
Query: 328 EISKILN 334
+ ++ N
Sbjct: 162 TVDRLSN 168
>gi|156370098|ref|XP_001628309.1| predicted protein [Nematostella vectensis]
gi|156215282|gb|EDO36246.1| predicted protein [Nematostella vectensis]
Length = 585
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 24/227 (10%)
Query: 143 FQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F +L L + M+ +E +G+ + +Q IP +L G+ V + S +GSG+TL Y +P+VQ
Sbjct: 109 FSDLALSSHMVSNLENNVGVSKLTSVQKAAIPTLLAGEDVCIKSKTGSGKTLCYAIPVVQ 168
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISHC 260
L I + R + P A+VL T E A Q F++ K +
Sbjct: 169 T-----------LQDIVPKIERADG--------PYAVVLVPTRELALQSFNLLLKLVKPF 209
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN-VSCDDIRYVVLDEADT 319
+ + GG K+ + I +L+ATP +L HIE ++ +++++VLDEAD
Sbjct: 210 QWVVPGLVVGGEKRKSEKARLRKGINILVATPGRLLDHIEKTQCLTFRNVQWIVLDEADR 269
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366
L D GF ++S IL +KD +K+ + Q +L++A + + + + +S
Sbjct: 270 LLDMGFEKDVSAILKAIKDQQIKAMHR--QAVLLSATLTQGVKQLVS 314
>gi|17545258|ref|NP_518660.1| ATP-dependent RNA helicase [Ralstonia solanacearum GMI1000]
gi|17427549|emb|CAD14067.1| probable atp-dependent rna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 540
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 14/193 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL- 60
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H L V ++ P+ RA+VL T E A Q +
Sbjct: 61 --------HRLSAVQPNKVQTPHGMRYPI-----RALVLTPTRELAAQVEESVRAYGKYL 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV D + +++ATP +L H+ R + I +VLDEAD +
Sbjct: 108 PLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRML 167
Query: 322 DRGFGPEISKILN 334
D GF +I KILN
Sbjct: 168 DMGFIHDIRKILN 180
>gi|410914046|ref|XP_003970499.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Takifugu
rubripes]
Length = 614
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 35/226 (15%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L ++K ++K G+ P+ IQ G+P VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 172 IKSFREMKLPPAILKGLKKKGIVHPTPIQIQGMPTVLSGRDMIGIAFTGSGKTLVFILPI 231
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++ +
Sbjct: 232 IMFC--LEQEKRLPFC---------------KREGPYGLIICPSRELARQTHGIIEY--Y 272
Query: 260 CA--------RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
C +L +++ GG+S K +V + M++ATP ++ ++ + VS D RY
Sbjct: 273 CKLLEEEGAPQLRTALCIGGMSVKEQMEVIKHGVHMMVATPGRLMDLLQKKMVSLDICRY 332
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+ LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 333 LALDEADRMIDMGFEEDIRTIFSYFK-------GQR-QTLLYSATM 370
>gi|400292266|ref|ZP_10794224.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
gi|399902636|gb|EJN85433.1| DEAD/DEAH box helicase [Actinomyces naeslundii str. Howell 279]
Length = 226
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 21/209 (10%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
AS R S + A ++F LG+ +++ ++ G P IQ +P L G+ V+
Sbjct: 8 ASHRFASGKTPAAGEATFASLGVDSDLAADLDARGFTAPFPIQAATLPDTLAGRDVLGRG 67
Query: 186 GSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+GSG+TLA+ LPLVQ +Q D+ +P HP +VL T E
Sbjct: 68 RTGSGKTLAFSLPLVQRLAQQDKA---------------------RPGHPIGLVLAPTRE 106
Query: 246 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305
A Q + + ++ +D + GGVS+K E + +++A P +L + VS
Sbjct: 107 LALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKDGVDVVVACPGRLLDLMGQGLVS 166
Query: 306 CDDIRYVVLDEADTLFDRGFGPEISKILN 334
D++ VLDEAD + D GF P + +IL
Sbjct: 167 LDEVEITVLDEADHMADLGFLPNVRRILR 195
>gi|390949101|ref|YP_006412860.1| DNA/RNA helicase [Thiocystis violascens DSM 198]
gi|390425670|gb|AFL72735.1| DNA/RNA helicase, superfamily II [Thiocystis violascens DSM 198]
Length = 439
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 101/196 (51%), Gaps = 24/196 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+A++++AV P+ IQ IP +L G ++ + +G+G+T A++LPL+Q
Sbjct: 2 SFDSLGLRADLLRAVASQRYGRPTPIQAQAIPVILAGHDLLAGAQTGTGKTAAFVLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHC 260
+ L E+ H Q PRA++L T E A Q G + + H
Sbjct: 62 L---LAEKGHPQ-------------------RQPRALILTPTRELAAQIGERVHAYGIHL 99
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ L S++ GGV + + + + +L+ATP +L H R + I +VLDEAD +
Sbjct: 100 S-LRSTVIFGGVGMQPQVNQLHRGVDILVATPGRLLDHAGQRTLDLSRIEILVLDEADRM 158
Query: 321 FDRGFGPEISKILNPL 336
D GF ++ +I+N L
Sbjct: 159 LDMGFIHDVKRIINLL 174
>gi|254251488|ref|ZP_04944806.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
gi|124894097|gb|EAY67977.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158]
Length = 480
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 18/198 (9%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP
Sbjct: 2 VSMSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLP 61
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
++Q EH + RA++L T E A Q + S
Sbjct: 62 ILQRLHTFYAEHRNAKRAV------------------RALILTPTRELAAQVEESVRAYS 103
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD
Sbjct: 104 KYLKLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSSLDILVLDEAD 163
Query: 319 TLFDRGFGPEISKILNPL 336
+ D GF +I ++L L
Sbjct: 164 RMLDMGFIHDIKRVLAKL 181
>gi|315633344|ref|ZP_07888635.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
gi|315477844|gb|EFU68585.1| ATP-dependent RNA helicase SrmB [Aggregatibacter segnis ATCC 33393]
Length = 442
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP
Sbjct: 4 LTQFADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGFDVLGSAPTGTGKTAAFLLPA 63
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL RR KP PR ++L T E A Q A+ ++
Sbjct: 64 IQ---------HL-----LDYPRR-------KPGAPRVLILTPTRELAMQVAEQAEELAC 102
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L + GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD
Sbjct: 103 FTKLSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADR 162
Query: 320 LFDRGFGPEISKI 332
+ GFG + KI
Sbjct: 163 MLQMGFGQDAEKI 175
>gi|310816695|ref|YP_003964659.1| ATP-dependent RNA helicase RhlE [Ketogulonicigenium vulgare Y25]
gi|385234299|ref|YP_005795641.1| ATP-dependent RNA helicase [Ketogulonicigenium vulgare WSH-001]
gi|308755430|gb|ADO43359.1| putative ATP-dependent RNA helicase RhlE [Ketogulonicigenium
vulgare Y25]
gi|343463210|gb|AEM41645.1| ATP-dependent RNA helicase, putative [Ketogulonicigenium vulgare
WSH-001]
Length = 517
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++++AV + G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTEFSDLNLDPKVLQAVAEAGYTTPTPIQAGAIPEALAGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q +L R A M PR++VLC T E A Q +
Sbjct: 61 IQ------------------LLSRGRARARM----PRSLVLCPTRELAAQVAENFDMYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 YTKLTKALLIGGVSFKDQDTLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKIL 333
+ D GF P+I +I
Sbjct: 159 MLDMGFIPDIERIF 172
>gi|407406718|gb|EKF30898.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 755
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 37/252 (14%)
Query: 138 EVVSSFQELGLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+ V+SF+++ L E+ KA+ + + +F PS IQ + I ++ GK V+++ G G+TLAYL
Sbjct: 82 KTVTSFEDMLLAPELRKALMQSLHIFTPSPIQQMAIKVIVQGKDTVVAAPHGEGKTLAYL 141
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL Q M RD +P++ PR I+L T+E Q H+
Sbjct: 142 LPLYQ----------------NMMKDRDVYKIPLRERRPRMILLAPTKELIAQLQHI--- 182
Query: 257 ISHCARLDSSMENGGVS----SKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308
CA LD++ +S +A +S N ++I P VL+ I R + DD
Sbjct: 183 ---CATLDAATGLRSISFTSRKRAKYHLSRLLKNTLADVVIMDPKVVLRLIRSRRLFLDD 239
Query: 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF--QTILVTAAIAE----MLG 362
IRYV +DEAD + + +L ++ + + QT+ TA I ++G
Sbjct: 240 IRYVAVDEADVMLSSQHDHDAVHLLMKVQKRMMFKHLWPVQTQTVFATAYITRKLEFVIG 299
Query: 363 EQLSSLMECLER 374
++ + + CL+R
Sbjct: 300 KKFPNAVTCLQR 311
>gi|402566171|ref|YP_006615516.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247368|gb|AFQ47822.1| DEAD/DEAH box helicase-like protein [Burkholderia cepacia GG4]
Length = 515
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 123/236 (52%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 37 TFASLGLSPEIVSALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPM-HPRAIVLCTTEESADQGFHMAK-FISH 259
++QL + Q + + D + +P+ P +VL T E A Q A + H
Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 215
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ +S QT+L +A + +G S L++ ER
Sbjct: 216 RMLDMGFIDDIETIVAATPESR--------QTMLFSATLDGKIGSLTSRLLKDPER 263
>gi|198462641|ref|XP_001352498.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
gi|198150914|gb|EAL29995.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
Length = 852
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFE- 99
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RRD P K RA++L T E A Q + K +
Sbjct: 100 ----------------KLQRRD----PTKGA--RALILSPTRELAVQTYKFIKELGRFME 137
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + + GG S + + +++ATP L + ++ + I YVV DEAD LF+
Sbjct: 138 LKTILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIDYVVFDEADRLFE 197
Query: 323 RGFGPEISKILNPL 336
GFG ++++ L+ L
Sbjct: 198 MGFGEQLNETLHRL 211
>gi|352100338|ref|ZP_08958087.1| DEAD/DEAH box helicase domain-containing protein [Halomonas sp.
HAL1]
gi|350601161|gb|EHA17212.1| DEAD/DEAH box helicase domain-containing protein [Halomonas sp.
HAL1]
Length = 421
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 104/195 (53%), Gaps = 23/195 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL +++A+ ++G P+ IQ IPA+L+GK ++ ++ +G+G+T A++LPL++
Sbjct: 26 FAKLGLSPPLVQAISELGYQTPTPIQEQAIPAILSGKDLIATAQTGTGKTAAFVLPLLER 85
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA 261
+S ++ RA++L T E A Q ++A++ H
Sbjct: 86 FSNAG---------------------TLRGKRIRALILVPTRELAVQVEANVAQYAKHT- 123
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S GGV ++A + A + +L+ATP +L R + D+++ +VLDEAD +
Sbjct: 124 HLTSMAMYGGVDTEAQKARLIAGVDILVATPGRLLDLAHQRALHFDELKAMVLDEADRMV 183
Query: 322 DRGFGPEISKILNPL 336
D GF +I KI+ L
Sbjct: 184 DMGFADDIRKIIERL 198
>gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 516
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 37 NFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 202 VYSQLDEEHHLQLVGITQMLRRD-EALLPMKPMHPRAIVLCTTEESADQGFHMA-KFISH 259
++QL + Q + + D A P P +VL T E A Q A + H
Sbjct: 97 RFAQLQKTQAQQPRAPREPNQGDRRARRPQPVARPGLLVLTPTRELAMQVTTAATTYGKH 156
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 215
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ +S QT+L +A + +G S L++ ER
Sbjct: 216 RMLDMGFIDDIETIVAATPESR--------QTMLFSATLDGKIGSLTSRLLKDPER 263
>gi|326929996|ref|XP_003211139.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Meleagris gallopavo]
Length = 831
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 125/307 (40%), Gaps = 62/307 (20%)
Query: 95 KLRKLNGSAKTNNPENKPSPPQP-------------EQQQLSNIASEREKSSGSNAEVVS 141
K R NG+ + P PP P E Q A ++K SG
Sbjct: 8 KQRGQNGAGEQRRAATLPVPPLPAFPTAEDRDDDTAEDTQAMVRAQNKKKKSGG------ 61
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
FQ +GL + K V K G VP+ IQ IP +L G+ VV + +GSG+T +LLP+
Sbjct: 62 -FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMF- 119
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E L P RA++L T E A Q K +
Sbjct: 120 -----------------------ERLKAPSPSGARALILSPTRELALQTLKFTKELGKFT 156
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L +++ GG + + ++IATP ++ + N+ + YVV DEAD LF
Sbjct: 157 GLKTALVLGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLHSMEYVVFDEADRLF 216
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVT 381
+ GF ++ +IL L S QT+L +A + ++L +E AG
Sbjct: 217 EMGFAEQLQEILARLPGS--------HQTVLFSATLPKLL----------VEFARAGLTE 258
Query: 382 AMLLEMD 388
ML+ +D
Sbjct: 259 PMLIRLD 265
>gi|195170534|ref|XP_002026067.1| GL16100 [Drosophila persimilis]
gi|194110947|gb|EDW32990.1| GL16100 [Drosophila persimilis]
Length = 854
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFE- 99
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RRD P K RA++L T E A Q + K +
Sbjct: 100 ----------------KLQRRD----PTKGA--RALILSPTRELAVQTYKFIKELGRFME 137
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + + GG S + + +++ATP L + ++ + I YVV DEAD LF+
Sbjct: 138 LKTILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIDYVVFDEADRLFE 197
Query: 323 RGFGPEISKILNPL 336
GFG ++++ L+ L
Sbjct: 198 MGFGEQLNETLHRL 211
>gi|66555009|ref|XP_395774.2| PREDICTED: probable ATP-dependent RNA helicase DDX17 [Apis
mellifera]
Length = 566
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP- 198
V +F+E G ++K +++ G P+ IQ G P L+G+ +V + +GSG+TL+Y+LP
Sbjct: 106 VFTFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPA 165
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+V + SQ ++ R+D P A+VL T E A Q +A
Sbjct: 166 IVHINSQ------------PKLGRKD---------GPIALVLAPTRELAQQIQQVADDFG 204
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H + + ++ GG A + + ++IATP +L +E + Y+VLDEAD
Sbjct: 205 HSSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEAD 264
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF P+I KI+ ++
Sbjct: 265 RMLDMGFEPQIRKIIEQIR 283
>gi|241662507|ref|YP_002980867.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240864534|gb|ACS62195.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 627
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 13/204 (6%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
A S+F LGL +++A+ ++ P+ +Q IPA L+G+ ++++S +GSG+T A++
Sbjct: 29 ATRASAFAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFI 88
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLR-RDEALLPMKP----MHP-RAIVLCTTEESADQG 250
LP +Q S+ E ++ G Q ++ R P KP + P R + L T +A G
Sbjct: 89 LPAIQRISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYG 148
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
H+ + + CA S+ G K L+ ++ P ++IATP +L HI+ + +
Sbjct: 149 RHLRRIV--CA----SILGGMPYPKQLDMLARMP-DIIIATPGRLLDHIDSGRIDLSALD 201
Query: 311 YVVLDEADTLFDRGFGPEISKILN 334
+V DEAD + D GF +I I+
Sbjct: 202 MLVFDEADRMLDMGFSDDIEAIVG 225
>gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
gi|151281105|gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
Length = 466
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 13/225 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL A +IKA+ + G P+ +Q IPA + G+ +++SS +GSG+T A++LP +
Sbjct: 2 TFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALH 61
Query: 202 VY-SQLDEEHHLQLVGITQMLRRDEALLP-MKPMHPRAIVLCTTEESADQ-GFHMAKFIS 258
+ S+ D+ + R P KP P+ +VL T E A Q K+ +
Sbjct: 62 KFASEGDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKYGA 121
Query: 259 HCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
R+ + GG+ K ++ ++ P +L+ATP ++ H+E + ++ +VLDEA
Sbjct: 122 FMKRVKAVSILGGMPYPKQMQLLAKNP-EILVATPGRLIDHMESGKIDFSQLQILVLDEA 180
Query: 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362
D + D GF +I KI + + +G QT+L +A + M+G
Sbjct: 181 DRMLDMGFIDDIEKI--------VAATPEGRQTMLFSATLDGMVG 217
>gi|388257169|ref|ZP_10134349.1| ATP-dependent RNA helicase RhlE [Cellvibrio sp. BR]
gi|387939373|gb|EIK45924.1| ATP-dependent RNA helicase RhlE [Cellvibrio sp. BR]
Length = 474
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 122/256 (47%), Gaps = 35/256 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+A++++A+ G P+ IQ IPAVL G ++ + +G+G+T + LPL++
Sbjct: 15 SFDTLGLRADILRAIADQGYSTPTPIQLQAIPAVLKGGDILAGAQTGTGKTAGFTLPLLE 74
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
SQ E Q G +P+ RA++L T E A Q F +
Sbjct: 75 KLSQAPAE---QAAG-------------RRPV--RALILTPTRELAAQVFESVRDYGKYL 116
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGVS + +L+ATP +L + VS + +VLDEAD +
Sbjct: 117 PLRSTVVFGGVSINPQMMKLRGGVDILVATPGRLLDLVNQNAVSLRQVEVLVLDEADRML 176
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTA-------AIAEMLGEQLSSLMECLER 374
D GF +I K+L L Q +L +A A+A+ L Q +L+E R
Sbjct: 177 DMGFIHDIKKVLALLPKQR--------QNLLFSATFSDEIKALADKLLNQ-PTLIEVARR 227
Query: 375 DNAG-KVTAMLLEMDQ 389
+ A +VT ++ +D+
Sbjct: 228 NTASERVTQVVYPVDR 243
>gi|336314302|ref|ZP_08569221.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335881315|gb|EGM79195.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 420
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 30/231 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL ++ AV G P+ IQ IP +L GK V+ + +G+G+T A+ LP++Q
Sbjct: 2 SFATLGLDPRILSAVTNQGYHTPTPIQQQTIPVILEGKDVLAGAQTGTGKTAAFTLPVLQ 61
Query: 202 VYSQ-LDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+ S+ + HLQ+ R +VL T E A Q K
Sbjct: 62 LLSKNTTKVSHLQV---------------------RCLVLTPTRELAQQVADSVKAYGAD 100
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L ++ GGVS D ++ + +L+ATP +L H+ VS +++ +VLDEAD +
Sbjct: 101 LPLKYAVFYGGVSINPQYDQASRGLDILVATPGRLLDHLHQGTVSLSELQILVLDEADRM 160
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371
D GF +I +I+ L QT+ +A A+ + E +L++
Sbjct: 161 LDMGFIHDIKRIMARLPKER--------QTLFFSATFAKEIKELADTLLKS 203
>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 453
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218
MG + IQ IP VL GK V+ ++ +G+G+T A+ LPL+Q
Sbjct: 1 MGYESMTPIQAQAIPVVLTGKDVMGAAQTGTGKTAAFSLPLLQ----------------- 43
Query: 219 QMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL 277
L R E HP RA+VL T E ADQ + +L S++ GG+ K
Sbjct: 44 -RLMRHENASASPARHPVRALVLLPTRELADQVAQQIALYAKHTKLRSTVVFGGMDMKPQ 102
Query: 278 EDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
+ +L+ATP +L HIE +NV + + YVVLDEAD + D GF P++ +IL+ L
Sbjct: 103 TIELKKGVEVLVATPGRLLDHIEAKNVVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 162
Query: 338 DS 339
S
Sbjct: 163 KS 164
>gi|238920914|ref|YP_002934429.1| ATP-dependent RNA helicase SrmB, putative [Edwardsiella ictaluri
93-146]
gi|238870483|gb|ACR70194.1| ATP-dependent RNA helicase SrmB, putative [Edwardsiella ictaluri
93-146]
Length = 448
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F EL L ++ A+ G P+ IQ IP ++G+ V+ S+ +G+G+T A+LLP +
Sbjct: 4 TNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPAL 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISH 259
Q H L P K P R ++L T E A Q A+ ++
Sbjct: 64 Q--------HLLDF--------------PRKKSGPPRVLILTPTRELAMQVADQARELAR 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGVS ++ N +++ATP +LQ+I++ N C + ++LDEAD
Sbjct: 102 HTSLDITTITGGVSYINHAEIFNTNQDLVVATPGRLLQYIKEENFDCRAVETLILDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ D GF +I +
Sbjct: 162 MLDMGFASDIETV 174
>gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 413
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF + L AE++ + ++ P+++Q IPA+L G ++ + +G+G+T A+ LP+++
Sbjct: 2 SFSSMALSAELLNVLSELNYSEPTQVQAEAIPAILAGSDLMAGAQTGTGKTAAFALPILE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
SQL + + + P+ RA++L T E A Q
Sbjct: 62 RLSQL---------------KSSQTSYELTPV--RALILTPTRELALQVHQSFVRYGDGL 104
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGVS A D+ A + +LIATP +L H+ +++ + ++V DEAD +
Sbjct: 105 TLKSAIVYGGVSIDAQADILKAGVDILIATPGRLLDHLRRGSLTLTQLAFLVFDEADRML 164
Query: 322 DRGFGPEISKILNPL 336
D GF EI IL L
Sbjct: 165 DMGFKDEIDAILKQL 179
>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase [Rhodospirillum centenum SW]
gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
Length = 528
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 121/248 (48%), Gaps = 35/248 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL ++KAVE++G P+ IQ +PA L G+ VV S+ +G+G+T A++LP
Sbjct: 9 SFSDLGLLPHLLKAVEELGFTTPTPIQQQALPAALTGRDVVASANTGTGKTAAFVLP--- 65
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
LQ + T R EA PR +VL T E A Q + +S
Sbjct: 66 ---------SLQRIATTA---RAEAA-----WGPRVLVLTPTRELASQVLESVRNLSKFG 108
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ + GG+ + ++ + +++ATP ++ H+E + + +VLDEAD +
Sbjct: 109 RIQTGTILGGMPYRQQLEMLRRRVDLIVATPGRLMDHMERGRLDLSGVEVLVLDEADRML 168
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI---AEMLGEQLSSLMECLERDNAG 378
D GF + I +A + QT+L TA + AE L + L+ + + D AG
Sbjct: 169 DMGFREAVEFIA-----AACPAE---RQTLLFTATLDRTAERLAQTLTR--DPVRIDVAG 218
Query: 379 K--VTAML 384
K VTA +
Sbjct: 219 KAVVTAQV 226
>gi|157820683|ref|NP_001101516.1| probable ATP-dependent RNA helicase DDX41 [Rattus norvegicus]
gi|149039854|gb|EDL93970.1| rCG24134 [Rattus norvegicus]
gi|187469705|gb|AAI66825.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Rattus norvegicus]
Length = 622
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|380011998|ref|XP_003690078.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Apis
florea]
Length = 566
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP- 198
V +F+E G ++K +++ G P+ IQ G P L+G+ +V + +GSG+TL+Y+LP
Sbjct: 106 VFTFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPA 165
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+V + SQ ++ R+D P A+VL T E A Q +A
Sbjct: 166 IVHINSQ------------PKLGRKD---------GPIALVLAPTRELAQQIQQVADDFG 204
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H + + ++ GG A + + ++IATP +L +E + Y+VLDEAD
Sbjct: 205 HSSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEAD 264
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF P+I KI+ ++
Sbjct: 265 RMLDMGFEPQIRKIIEQIR 283
>gi|329948141|ref|ZP_08295013.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
gi|328522874|gb|EGF49979.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 170 str. F0386]
Length = 525
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
AS R S + + ++F LG+ +++ ++ G P IQ +P L G+ V+
Sbjct: 18 ASYRFASGKAPSAGEATFASLGVDSDLAADLDSRGFTAPFPIQAATLPDTLAGRDVLGRG 77
Query: 186 GSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+GSG+TLA+ LPLVQ +Q D+ +P HP +VL T E
Sbjct: 78 RTGSGKTLAFSLPLVQRLAQQDKA---------------------RPGHPIGLVLAPTRE 116
Query: 246 SADQGFHMAKFISHCAR---LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
A Q +A+ I AR +D + GGVS+K E A + +++A P +L +
Sbjct: 117 LALQ---IAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGRLLDLMGQG 173
Query: 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
VS D++ VLDEAD + D GF P + +IL
Sbjct: 174 LVSLDEVEITVLDEADHMADLGFLPNVRRILR 205
>gi|320538877|ref|ZP_08038553.1| putative RNA helicase [Serratia symbiotica str. Tucson]
gi|320031037|gb|EFW13040.1| putative RNA helicase [Serratia symbiotica str. Tucson]
Length = 437
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 22/196 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFKTLGLSAEILRAVEEQGYREPTPIQRQAIPMVLAGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
+ SQ ++ P K P RA++L T E A Q S
Sbjct: 62 LLSQHEQ--------------------PAKGRRPVRALILTPTRELAAQIGENVDAYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
RL S + GGVS + +L+ATP +L +E V I +VLDEAD +
Sbjct: 102 LRLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLD-LEQNAVDLSKIEILVLDEADRM 160
Query: 321 FDRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 161 LDMGFIHDIRRVLAKL 176
>gi|94309401|ref|YP_582611.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 540
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP--RAIVLCTTEESADQGFHMAKFISH 259
+ S+ R + P + P RA+VL T E A Q +
Sbjct: 62 LLSET-------------AARANGGNAP-RGARPNVRALVLTPTRELAAQVEESVRNYGK 107
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L S + GGV + + +++ATP +L H+ R + + +VLDEAD
Sbjct: 108 YLKLRSMVMFGGVGINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVLDEADR 167
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF +I K+LN L
Sbjct: 168 MLDMGFIHDIRKVLNVL 184
>gi|404491935|ref|YP_006716041.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544066|gb|ABA87628.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 435
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F EL L ++KA+ G VP+ IQ +P L G+ ++ S+G+G+G+T A++LP +Q
Sbjct: 3 FSELKLDPRILKALTDCGYHVPTPIQAQAVPEALAGRDLIASAGTGTGKTAAFMLPALQR 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ ++ RR A PR +VL T E A Q A+
Sbjct: 63 LT-------------VKIARRKGA--------PRMLVLAPTRELAGQVMDAARVYGKYLG 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L +++ GGV + P+ +++ATP +L H++ R++ + +VLDEAD + D
Sbjct: 102 LTTAVLLGGVPYRDQFRALAKPLDLVVATPGRLLDHLQRRSIDLSCLEMLVLDEADRMLD 161
Query: 323 RGFGPEISKI 332
GF ++ K+
Sbjct: 162 MGFKEDVDKV 171
>gi|383863318|ref|XP_003707128.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like
[Megachile rotundata]
Length = 566
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP- 198
V +F+E G ++K +++ G P+ IQ G P L+G+ +V + +GSG+TL+Y+LP
Sbjct: 106 VFTFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPA 165
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+V + SQ ++ R+D P A+VL T E A Q +A
Sbjct: 166 IVHINSQ------------PKLGRKD---------GPIALVLAPTRELAQQIQQVADDFG 204
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H + + ++ GG A + + ++IATP +L +E + Y+VLDEAD
Sbjct: 205 HTSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEAD 264
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF P+I KI+ ++
Sbjct: 265 RMLDMGFEPQIRKIIEQIR 283
>gi|350424793|ref|XP_003493914.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Bombus
impatiens]
Length = 566
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP- 198
V +F+E G ++K +++ G P+ IQ G P L+G+ +V + +GSG+TL+Y+LP
Sbjct: 106 VFTFEETGFPDYVLKEIKRQGFTEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPA 165
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+V + SQ ++ R+D P A+VL T E A Q +A
Sbjct: 166 IVHINSQ------------PKLGRKD---------GPIALVLAPTRELAQQIQQVADDFG 204
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H + + ++ GG A + + ++IATP +L +E + Y+VLDEAD
Sbjct: 205 HSSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGRLLDFLESGRTNLKRCTYLVLDEAD 264
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF P+I KI+ ++
Sbjct: 265 RMLDMGFEPQIRKIIEQIR 283
>gi|187927918|ref|YP_001898405.1| DEAD/DEAH box helicase [Ralstonia pickettii 12J]
gi|309781089|ref|ZP_07675827.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
gi|404393998|ref|ZP_10985802.1| hypothetical protein HMPREF0989_02676 [Ralstonia sp. 5_2_56FAA]
gi|187724808|gb|ACD25973.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12J]
gi|308920155|gb|EFP65814.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
gi|348614316|gb|EGY63868.1| hypothetical protein HMPREF0989_02676 [Ralstonia sp. 5_2_56FAA]
Length = 627
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 13/204 (6%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
A S+F LGL +++A+ ++ P+ +Q IPA L+G+ ++++S +GSG+T A++
Sbjct: 29 ATRASAFAALGLDDRIVRALGEVNYTTPTPVQAQAIPACLSGRDLLVTSQTGSGKTAAFI 88
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLR-RDEALLPMKP----MHP-RAIVLCTTEESADQG 250
LP +Q S+ E ++ G Q ++ R P KP + P R + L T +A G
Sbjct: 89 LPAIQRISEQPEPQRPRMDGPPQRMKGRRPRPAPAKPSLLVLTPTRELALQVTTATAQYG 148
Query: 251 FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
H+ + + CA S+ G K L+ ++ P ++IATP +L HI+ + +
Sbjct: 149 RHLRRIV--CA----SILGGMPYPKQLDMLARMP-DIIIATPGRLLDHIDSGRIDLSALD 201
Query: 311 YVVLDEADTLFDRGFGPEISKILN 334
+V DEAD + D GF +I I+
Sbjct: 202 MLVFDEADRMLDMGFSDDIEAIVG 225
>gi|443704392|gb|ELU01455.1| hypothetical protein CAPTEDRAFT_148841 [Capitella teleta]
Length = 580
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+E+ ++ ++KMG+ P+ IQ GIP VL+G+ ++ + +GSG+T+ + LPL
Sbjct: 138 IKTFKEMKFPKPLLSCLKKMGIKAPTPIQIQGIPTVLSGRDMIGIAFTGSGKTIVFTLPL 197
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L + RDE P +++C + E A Q + IS
Sbjct: 198 MMFC--LEQEKRLPFI-------RDEG--------PYGLIICPSRELARQTNDIIVSISQ 240
Query: 260 CAR------LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ S + GGV+ K DV + + +L+ATP ++ + + ++ D RY+
Sbjct: 241 YMENEGFPAIRSGLCIGGVAVKEQMDVIHKGVHVLVATPGRLMDMLAKKMINLDVCRYLC 300
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+DEAD + D GF ++ I + K GQ QT+L +A +
Sbjct: 301 MDEADRMIDMGFEEDVRTIFSYFK-------GQR-QTLLFSATM 336
>gi|330793454|ref|XP_003284799.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
gi|325085293|gb|EGC38703.1| hypothetical protein DICPUDRAFT_28243 [Dictyostelium purpureum]
Length = 558
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 137/285 (48%), Gaps = 37/285 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F+E+ + +I+ ++K G+ PS IQ G+P VL+G+ ++ + +GSG+TL + LP+
Sbjct: 108 ITTFKEMKIPRSIIQVLDKKGIKKPSPIQMQGLPVVLSGRDMIGIAYTGSGKTLVFTLPM 167
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FIS 258
V L+EE L ++ + P ++L + E A Q + + F
Sbjct: 168 VLF--ALEEEKKLPII---------------QGEGPFGLILSPSRELARQTYDLVNSFTD 210
Query: 259 HCA-----RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
A +L + + GG+ + E V I M++ATP +L+ ++ + ++ + +Y+
Sbjct: 211 SLAKDGFPKLRTLLAIGGIDMREQEQVFRKGIHMIVATPGRLLELLQKKKINFNLCKYLG 270
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD L D GF +I +L+ + QT+L +A + + + E S +
Sbjct: 271 LDEADRLIDFGFEDDIRSVLDHFTNQR--------QTLLFSATMPKKIQEFARSALVLPV 322
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L + Q F E+ K+V ++ L + P
Sbjct: 323 EVNVGRAGAANLNVTQEVEFVKPEA------KIVYLLECLQKTPP 361
>gi|426403343|ref|YP_007022314.1| RNA helicase [Bdellovibrio bacteriovorus str. Tiberius]
gi|425860011|gb|AFY01047.1| RNA helicase [Bdellovibrio bacteriovorus str. Tiberius]
Length = 408
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 128/249 (51%), Gaps = 29/249 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F + L ++K ++ + + P++IQ IP +++ ++VV S +GSG+TLAY+LP+
Sbjct: 1 MNTFADFELLPSLLKTLKTLKISKPTDIQKQAIPLIMSHQAVVGVSETGSGKTLAYVLPI 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMAKFIS 258
+ L++ P+K + PRA+V+ + E +Q + K ++
Sbjct: 61 LNYLKSLEDAGD-----------------PVKEENAPRAVVMVPSRELGEQVAKVFKSMT 103
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H RL GG+S + ++ +L+ATP ++Q + +S D+R++V DEAD
Sbjct: 104 HDTRLRVRPALGGMSLEQARRNTSGAFEVLLATPGRLVQMLNKDLISLRDVRFLVFDEAD 163
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM---ECLERD 375
+ D+GF P+ ++I++ + L +A +++ + + ++ L E +
Sbjct: 164 QMLDQGFLPDTNRIVDCCPEDV--------NLALFSATVSKTVEKLMNDLFAKAEVIRSK 215
Query: 376 NAGKVTAML 384
N+GKV + L
Sbjct: 216 NSGKVVSTL 224
>gi|68360354|ref|XP_683832.1| PREDICTED: probable ATP-dependent RNA helicase DDX31 isoform 1
[Danio rerio]
Length = 739
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 127/259 (49%), Gaps = 39/259 (15%)
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEK-MGLFVP 164
NNPE P P Q+ +EK SN +F+EL L ++ + K + +
Sbjct: 131 NNPE-IPDVLSPAVNQV------KEKVFTSN-----TFEELNLHPHLVATLHKVLNVSSM 178
Query: 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRD 224
+ +Q IP +++GK V+ S +GSG+TLAY +P+VQ L I ++R
Sbjct: 179 TSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQF-----------LQAIQPKVKRS 227
Query: 225 EALLPMKPMHPRAIVLCTTEESADQGFHM-AKFISHCARLDSSMENGGVSSKALEDVSNA 283
+ P A+V+ T E A Q F M K + + + GG KA +
Sbjct: 228 DG--------PLAVVIVPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRK 279
Query: 284 PIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALK 342
I +LI+TP ++ HI++ +++ +R+++LDEAD + D GF +++ ILN AL
Sbjct: 280 GINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILN-----ALN 334
Query: 343 SNGQGFQTILVTAAIAEML 361
+ G Q +L++A I E L
Sbjct: 335 AAGPDRQNVLLSATITEGL 353
>gi|333926166|ref|YP_004499745.1| DEAD/DEAH box helicase [Serratia sp. AS12]
gi|333931119|ref|YP_004504697.1| DEAD/DEAH box helicase domain-containing protein [Serratia
plymuthica AS9]
gi|386327989|ref|YP_006024159.1| DEAD/DEAH box helicase [Serratia sp. AS13]
gi|333472726|gb|AEF44436.1| DEAD/DEAH box helicase domain protein [Serratia plymuthica AS9]
gi|333490226|gb|AEF49388.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS12]
gi|333960322|gb|AEG27095.1| DEAD/DEAH box helicase domain protein [Serratia sp. AS13]
Length = 454
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 101/196 (51%), Gaps = 21/196 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHC 260
+ S + D A+ +P+ RA++L T E A Q G ++ + H
Sbjct: 62 LLS-----------------KHDHAVKGRRPV--RALILTPTRELAAQIGENVEAYSKHL 102
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
RL S + GGVS + +L+ATP +L V I +VLDEAD +
Sbjct: 103 -RLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQHAVDLSKIEILVLDEADRM 161
Query: 321 FDRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 162 LDMGFIHDIRRVLAKL 177
>gi|392552241|ref|ZP_10299378.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas spongiae
UST010723-006]
Length = 409
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 99/196 (50%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +L L +++ A+EKMG P+ IQ + IPA + G+ ++ SS +G+G+T A+LL +Q
Sbjct: 3 FADLDLDPKLLNAIEKMGFDKPTSIQSLAIPAAMKGRDILASSPTGTGKTAAFLLGSMQY 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ RR+ P R +++ T E A Q + A ++
Sbjct: 63 --------------LIDFPRRN-------PGFARVLIMTPTRELAYQVYEQANALAAQTH 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ + +++ +LIATP ++ ++ N +D+ ++LDEAD + D
Sbjct: 102 LKIGVVTGGINYGSHKEIFEKNNDILIATPGRLMDYLNSENFHAEDVEVLILDEADRMLD 161
Query: 323 RGFGPEISKILNPLKD 338
GF E+ +I + K+
Sbjct: 162 MGFRKEMLRICDEAKN 177
>gi|260774084|ref|ZP_05882999.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
gi|260611045|gb|EEX36249.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
Length = 395
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL +IK+V ++G P+ IQ IP +L G+ ++ ++ +G+G+T ++LP++
Sbjct: 2 SFTQLGLNEALIKSVAELGYQTPTTIQTQAIPVILKGQDLIAAAQTGTGKTAGFVLPILD 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
Q G TQ +R RA++L T E A Q K +
Sbjct: 62 RLMQ----------GQTQRKKR-----------IRALILVPTRELAIQVADNVKQYAQYT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S GGV +A + + +L+ATP +L R V D+I VVLDEAD +
Sbjct: 101 ELTSLAMYGGVDEQAQKQQLIDGVDVLVATPGRLLDMYAQRAVHFDEIEVVVLDEADRML 160
Query: 322 DRGFGPEISKILNPL 336
D GF I+KI+ L
Sbjct: 161 DMGFIEAINKIIQRL 175
>gi|85703303|ref|ZP_01034407.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
gi|85672231|gb|EAQ27088.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. 217]
Length = 515
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALQGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q S
Sbjct: 61 LS------------------LLSRGRARARM----PRSLVLCPTRELAAQVAENFDTYSK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HLKLTKALLIGGVSFKEQDKLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 159 MLDMGFIPDIERIFS 173
>gi|317049189|ref|YP_004116837.1| DEAD/DEAH box helicase [Pantoea sp. At-9b]
gi|316950806|gb|ADU70281.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
Length = 442
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+++ G P+ IQ IPA L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLDALQEKGFTRPTAIQAEAIPAALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q L+ + K PR ++L T E A Q A+ ++
Sbjct: 63 MQ-----------HLIDFPR----------KKSGPPRILILTPTRELAMQVADHARELAK 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGV+ +V + +++AT +LQ+I++ N C + ++LDEAD
Sbjct: 102 HTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 162 MLDMGFAQDIETI 174
>gi|356530461|ref|XP_003533799.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
17-like [Glycine max]
Length = 596
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 119/234 (50%), Gaps = 25/234 (10%)
Query: 129 REKSSGSNAEVVSS--FQELGLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
+ K +G+N +V +S F LGL + + + + +++G VP+ +Q IP +L+G+ ++++
Sbjct: 11 KNKGNGANNDVFASCSFSSLGLDSNLCEQLRDRLGFEVPTLVQAQAIPVILSGRHALVNA 70
Query: 186 GSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+G+G+T+AYL P++ HHLQ G ++R + A+VL T E
Sbjct: 71 ATGTGKTVAYLAPII---------HHLQ--GYENRIQRSDGTF--------ALVLVPTRE 111
Query: 246 SADQGFH-MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV 304
Q + + K + + GG + I +LIATP +L H+++
Sbjct: 112 LCLQVYEILQKLLHRFHWIVPGYIMGGEKRSKEKSRLRKGISILIATPGRLLDHLKNTTA 171
Query: 305 SC-DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
++R+++ DEAD + + GFG +I +IL+ L S K +G T+L + I
Sbjct: 172 FLYSNLRWIIFDEADRILELGFGKDIEEILDLL-GSRKKGHGDQENTVLTHSKI 224
>gi|261251247|ref|ZP_05943821.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417956619|ref|ZP_12599583.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938120|gb|EEX94108.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342809459|gb|EGU44578.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 419
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 99/193 (51%), Gaps = 18/193 (9%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ FQ LGL + ++ +EK+ +P+E+Q IP VL G+ V+ + +G+G+T A+ LP++
Sbjct: 3 TDFQSLGLCSTLLTTLEKLNFKLPTEVQKHAIPHVLEGQDVLAGAQTGTGKTAAFGLPII 62
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q L+ E T+ ++ ++ L A+VL T E A Q F +
Sbjct: 63 Q--RLLESE-------TTRDIQSNDVL---------ALVLVPTRELAQQVFDNITLYAQD 104
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ GG S + +LIATP +L H+ +N++ +Y+VLDEAD +
Sbjct: 105 TIIKVVTAYGGTSMNVQTRNLDQGCDILIATPGRLLDHLFCKNINLTKTQYLVLDEADRM 164
Query: 321 FDRGFGPEISKIL 333
D GF P+I +IL
Sbjct: 165 LDMGFMPDIKRIL 177
>gi|56696327|ref|YP_166684.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
gi|56678064|gb|AAV94730.1| ATP-dependent RNA helicase RhlE [Ruegeria pomeroyi DSS-3]
Length = 471
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F EL L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q +
Sbjct: 61 IT------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 159 MLDMGFIPDIERIFS 173
>gi|34784845|gb|AAH56735.1| Si:ch211-89p1.3 protein [Danio rerio]
Length = 673
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 127/259 (49%), Gaps = 39/259 (15%)
Query: 106 NNPENKPSPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEK-MGLFVP 164
NNPE P P Q+ +EK SN +F+EL L ++ + K + +
Sbjct: 65 NNPE-IPDVLSPAVNQV------KEKVFTSN-----TFEELNLHPHLVATLHKVLNVSSM 112
Query: 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRD 224
+ +Q IP +++GK V+ S +GSG+TLAY +P+VQ L I ++R
Sbjct: 113 TSVQKQTIPVLMSGKDAVVRSQTGSGKTLAYGIPMVQF-----------LQAIQPKVKRS 161
Query: 225 EALLPMKPMHPRAIVLCTTEESADQGFHM-AKFISHCARLDSSMENGGVSSKALEDVSNA 283
+ P A+V+ T E A Q F M K + + + GG KA +
Sbjct: 162 DG--------PLAVVIVPTRELALQSFQMFQKLLRPFTWIVPGVLMGGEKKKAEKARLRK 213
Query: 284 PIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALK 342
I +LI+TP ++ HI++ +++ +R+++LDEAD + D GF +++ ILN AL
Sbjct: 214 GINVLISTPGRLVDHIKNTLSIAFSAVRWLILDEADRILDLGFEKDLTVILN-----ALN 268
Query: 343 SNGQGFQTILVTAAIAEML 361
+ G Q +L++A I E L
Sbjct: 269 TAGPDRQNVLLSATITEGL 287
>gi|320531823|ref|ZP_08032743.1| DEAD/DEAH box helicase, partial [Actinomyces sp. oral taxon 171
str. F0337]
gi|320135962|gb|EFW27990.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 449
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 21/194 (10%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F +LG+ +++ ++ G P IQ +P L G+ V+ +GSG+TLA+ LPLV
Sbjct: 10 ATFADLGVDSDLAADLDARGFTAPFPIQAATLPDTLAGRDVLGRGRTGSGKTLAFSLPLV 69
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q +Q D+ +P HP +VL T E A Q + + ++
Sbjct: 70 QRLAQQDKA---------------------RPGHPIGLVLAPTRELALQIAEVIEPLARV 108
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+D + GGVS+K E A + +++A P +L + VS D++ VLDEAD +
Sbjct: 109 VDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGRLLDLMGQGLVSLDEVEITVLDEADHM 168
Query: 321 FDRGFGPEISKILN 334
D GF P + +IL
Sbjct: 169 ADLGFLPGVRRILR 182
>gi|241662052|ref|YP_002980412.1| DEAD/DEAH box helicase [Ralstonia pickettii 12D]
gi|240864079|gb|ACS61740.1| DEAD/DEAH box helicase domain protein [Ralstonia pickettii 12D]
Length = 565
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 14/195 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S V Q +R P+ RA+VL T E A Q +
Sbjct: 62 RLSASQPNK----VQTPQGMR-----FPI-----RALVLTPTRELAAQVEESVRAYGKYL 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV D + +++ATP +L H+ R + I +VLDEAD +
Sbjct: 108 PLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRML 167
Query: 322 DRGFGPEISKILNPL 336
D GF +I KILN L
Sbjct: 168 DMGFIHDIRKILNIL 182
>gi|415770557|ref|ZP_11484900.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|348656730|gb|EGY74337.1| ATP-dependent RNA helicase SrmB [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 443
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 21/190 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F + L E++ A++K G P+ IQ IPA + G V+ S+ +G+G+T A+LLP +Q
Sbjct: 7 FADFDLAPELLNALQKKGYQRPTAIQQETIPAAMEGGDVLGSAPTGTGKTAAFLLPAIQ- 65
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
HL RR KP PR +VL T E A Q AK ++ +
Sbjct: 66 --------HL-----LDYPRR-------KPGAPRVLVLTPTRELAMQVAEQAKELACFTK 105
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ GGV+ + ++ N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 106 RSIATITGGVAYQNHGEIFNKNQDIVVATPGRLLQYIKEENFDCRTVEILIFDEADRMLQ 165
Query: 323 RGFGPEISKI 332
GFG + KI
Sbjct: 166 MGFGQDAEKI 175
>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 476
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 19/198 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF++LGL ++++A+ + G P+ IQ IP +L G V+ + +G+G+T + LP++Q
Sbjct: 6 SFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTLPMLQ 65
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
E H + + P K HP RA++L T E A Q + +
Sbjct: 66 KL----ESH------------ANSSTSPAK--HPTRALILVPTRELAIQVYESVRAYGKY 107
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GV+ + + +L+ATP +L H++ +N+ I ++LDEAD +
Sbjct: 108 VALKSAVIYDGVNIDVQIAAIRSGVEILVATPGRLLDHLQQKNLILSKIEILILDEADRM 167
Query: 321 FDRGFGPEISKILNPLKD 338
D GF P+I +I+ L D
Sbjct: 168 LDMGFLPDIKQIIQMLPD 185
>gi|116071349|ref|ZP_01468618.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
gi|116066754|gb|EAU72511.1| DEAD/DEAH box helicase-like protein [Synechococcus sp. BL107]
Length = 467
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 99/192 (51%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++L L AE ++++ + G P+ IQ + IP VL GK ++ S+ +G+G+T A++LP+++
Sbjct: 34 TFEQLNLCAETVRSIREAGYLSPTPIQTLTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 93
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ D+ LQ+ +++L T E A Q AK +
Sbjct: 94 LLRVEDKPKRLQV---------------------HSLILTPTRELAAQVEANAKGYTKYL 132
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ S GGVS + + +L+ATP +L I + + D+++ +VLDEAD +
Sbjct: 133 GIRSDAVFGGVSIRPQVKRLQGGVDILVATPGRLLDLINQKTIRFDNLKILVLDEADRML 192
Query: 322 DRGFGPEISKIL 333
D GF +I K++
Sbjct: 193 DMGFIRDIKKVI 204
>gi|88858341|ref|ZP_01132983.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
family protein [Pseudoalteromonas tunicata D2]
gi|88819958|gb|EAR29771.1| putative ATP-dependent RNA helicase (rhlE-like); DEAD-box protein
family protein [Pseudoalteromonas tunicata D2]
Length = 413
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 22/195 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F LGL ++++A+ + G P+ IQ I +L GK V+ + +G+G+T A+ LP++Q
Sbjct: 2 GFAALGLNQQLVQALTECGYDTPTPIQTAAIGEILQGKDVMAGAQTGTGKTAAFALPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L E+ P + R +VL T E A Q F + +
Sbjct: 62 ---RLAEQ-------------------PERKGQLRTLVLTPTRELAQQVFASFEKYGQHS 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L +++ GGVS A + +++ATP +L H+ V+ +++Y+V DEAD +
Sbjct: 100 ELTAALAYGGVSIGEQIKAIKAGVDIMVATPGRLLDHLVKGTVNLSNVQYLVFDEADRML 159
Query: 322 DRGFGPEISKILNPL 336
D GF EI+ IL L
Sbjct: 160 DMGFIDEINNILRRL 174
>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 426
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +LGL AE+++AV G P+ IQ IPAVLNG ++ ++ +G+G+T + LP+
Sbjct: 1 MTKFNDLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPV 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFIS 258
+Q S + V RA+VL T E A Q G +A +
Sbjct: 61 LQRLSDTPVSSGRRPV--------------------RALVLTPTRELAAQVGASVADYGK 100
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ L S++ GGV + + +L+ATP +L H+ + V + ++LDEAD
Sbjct: 101 YLP-LRSAIVFGGVKINPQISMLRKGVDILVATPGRLLDHVSQKTVDLSKVEILILDEAD 159
Query: 319 TLFDRGFGPEISKIL 333
+ D GF +I K+L
Sbjct: 160 RMLDMGFIRDIRKVL 174
>gi|359437044|ref|ZP_09227119.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20311]
gi|358028303|dbj|GAA63368.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20311]
Length = 408
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDDKLLNAINKMGFETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ RRD P R +++ T E A Q + ++
Sbjct: 63 --------------LMDFPRRD-------PGFARVLIMTPTRELAYQIHEQCELLAKQTH 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ +++ +LIATP +++++E N +++ ++LDEAD + D
Sbjct: 102 LKIGVVTGGINYGTHKEIFENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLD 161
Query: 323 RGFGPEISKILNPLKD 338
GF E+ +I N K+
Sbjct: 162 MGFRKEMLRICNEAKN 177
>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 492
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A+++KAV G PS IQ IPAVL GK V+ ++ +G+G+T + LPL++
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S+ + Q+ RA+VL T E A Q +
Sbjct: 62 LLSKGTKAPAKQV---------------------RALVLTPTRELAAQIGESVEVYGQFL 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV N + +L+ATP +L R VS + +VLDEAD +
Sbjct: 101 PLKSAVIFGGVGIGPQITKLNRGVDILVATPGRLLDLYNQRAVSFSQLEVLVLDEADRML 160
Query: 322 DRGFGPEISKIL 333
D GF +I KIL
Sbjct: 161 DMGFIHDIKKIL 172
>gi|307172925|gb|EFN64092.1| Probable ATP-dependent RNA helicase DDX17 [Camponotus floridanus]
Length = 414
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP- 198
V +F+E G ++K +++ G P+ IQ G P L+G+ +V + +GSG+TL+Y+LP
Sbjct: 100 VFNFEEAGFPDYVLKEIKRQGFSEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPA 159
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+V + SQ ++ R+D P A+VL T E A Q +A
Sbjct: 160 IVHINSQ------------PKLSRKD---------GPIALVLAPTRELAQQIQQVADDFG 198
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H + + ++ GG A + + ++IATP +L +E + Y+VLDEAD
Sbjct: 199 HSSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGRLLDFLESGKTNLKRCTYLVLDEAD 258
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF P+I KI+ ++
Sbjct: 259 RMLDMGFEPQIRKIIEQIR 277
>gi|83942648|ref|ZP_00955109.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
gi|83846741|gb|EAP84617.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. EE-36]
Length = 559
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 24/195 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+++ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 21 MTKFSDLNLNPKVLKAIDEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPM 80
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFIS 258
+ +L R A M PR++VLC T E A Q + +
Sbjct: 81 IT------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTK 118
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H +L ++ GGVS + + + + +LIATP ++ H E + D++ +V+DEAD
Sbjct: 119 HL-KLTKALLIGGVSFGEQDKLIDKGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEAD 177
Query: 319 TLFDRGFGPEISKIL 333
+ D GF P+I +I
Sbjct: 178 RMLDMGFIPDIERIF 192
>gi|424778219|ref|ZP_18205170.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887047|gb|EKU29458.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 487
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 93/193 (48%), Gaps = 19/193 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F L L +++AV G P+ IQ IP V+ G ++ ++ +G+G+T + LP++
Sbjct: 6 TFASLELAEPLLRAVTDAGYTHPTPIQAQAIPKVIEGGDLLAAAQTGTGKTAGFTLPILH 65
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L+ Q R KP PRA++L T E A Q + S
Sbjct: 66 -----------RLLNNPQQNR--------KPGRPRALILAPTRELAAQVEESVRLYSQHT 106
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
RL S + GGV+ P+ +L+ATP +L H+ R V + +VLDEAD +
Sbjct: 107 RLRSMVMFGGVNINPQFHALRKPLDILVATPGRLLDHVRQRTVDLTGVEILVLDEADRML 166
Query: 322 DRGFGPEISKILN 334
D GF +I KI++
Sbjct: 167 DMGFIRDIRKIIS 179
>gi|365828806|ref|ZP_09370587.1| hypothetical protein HMPREF0975_02370, partial [Actinomyces sp.
oral taxon 849 str. F0330]
gi|365262134|gb|EHM92032.1| hypothetical protein HMPREF0975_02370, partial [Actinomyces sp.
oral taxon 849 str. F0330]
Length = 433
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 21/209 (10%)
Query: 126 ASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
AS R S + A ++F LG+ +++ ++ G P IQ +P L G+ V+
Sbjct: 8 ASHRFASGKTPAAGEATFTSLGVDSDLATDLDSRGFTAPFPIQATTLPDTLAGRDVLGRG 67
Query: 186 GSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+GSG+TLA+ LPLVQ +Q D+ +P HP +VL T E
Sbjct: 68 RTGSGKTLAFSLPLVQRLAQQDKA---------------------RPGHPIGLVLAPTRE 106
Query: 246 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305
A Q + + ++ +D + GGVS+K E A + +++A P +L + +
Sbjct: 107 LALQIAEVIEPLARVVDMDVTTIFGGVSAKPQEKALKAGVDVVVACPGRLLDLMGQGLIE 166
Query: 306 CDDIRYVVLDEADTLFDRGFGPEISKILN 334
D++ VLDEAD + D GF P + +IL
Sbjct: 167 LDEVEITVLDEADHMADLGFLPNVRRILR 195
>gi|448746777|ref|ZP_21728442.1| DEAD-like helicase [Halomonas titanicae BH1]
gi|445565705|gb|ELY21814.1| DEAD-like helicase [Halomonas titanicae BH1]
Length = 429
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 110/201 (54%), Gaps = 23/201 (11%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E++ F +LGL + +++A+ ++G P+ IQ IPA+L+G ++ ++ +G+G+T A++
Sbjct: 28 SELLMPFSKLGLSSPLVQAITELGYKTPTPIQEQAIPAILSGNDLIATAQTGTGKTAAFV 87
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAK 255
LPL++ +S ++ RA++L T E A Q ++A+
Sbjct: 88 LPLLERFSNAG---------------------TLRGKRIRALILVPTRELAVQVEANVAQ 126
Query: 256 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315
+ H +L S GGV ++A ++ + +L+ATP +L R + D+++ +VLD
Sbjct: 127 YAKHT-QLTSMAMYGGVDTEAQKERLIKGVDILVATPGRLLDLAHQRALHFDELKVMVLD 185
Query: 316 EADTLFDRGFGPEISKILNPL 336
EAD + D GF +I KI++ L
Sbjct: 186 EADRMVDMGFVDDIHKIIDRL 206
>gi|374366617|ref|ZP_09624693.1| RNA helicase [Cupriavidus basilensis OR16]
gi|373101750|gb|EHP42795.1| RNA helicase [Cupriavidus basilensis OR16]
Length = 577
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 17/196 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LPL+Q
Sbjct: 12 SFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLQ 71
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S+ R+ A P+ RA+VL T E A Q +
Sbjct: 72 LLSESSAG-------------REPARGQRLPV--RALVLTPTRELAAQVEESVRNYGKYL 116
Query: 262 RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+L S + GGV + +E + + +++ATP +L H+ R + + +VLDEAD +
Sbjct: 117 KLRSMVMFGGVGINPQIEQLKRG-VDIVVATPGRLLDHLSQRTIDLSHVEMLVLDEADRM 175
Query: 321 FDRGFGPEISKILNPL 336
D GF +I KILN L
Sbjct: 176 LDMGFIHDIRKILNVL 191
>gi|292489103|ref|YP_003531990.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
gi|292900225|ref|YP_003539594.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|428786062|ref|ZP_19003545.1| ATP-dependent RNA helicase [Erwinia amylovora ACW56400]
gi|291200073|emb|CBJ47199.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC 49946]
gi|291554537|emb|CBA22120.1| ATP-dependent RNA helicase [Erwinia amylovora CFBP1430]
gi|312173260|emb|CBX81515.1| ATP-dependent RNA helicase [Erwinia amylovora ATCC BAA-2158]
gi|426275457|gb|EKV53192.1| ATP-dependent RNA helicase [Erwinia amylovora ACW56400]
Length = 442
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L +++++++ G P+ IQ IP L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 258
+Q H L P K P R ++L T E A Q A+ ++
Sbjct: 63 LQ--------HLLDF--------------PRKKSGPPRILILTPTRELAMQVADQARELA 100
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RLD + GGV+ +V + +++AT +LQ+I++ N C + ++LDEAD
Sbjct: 101 KHTRLDIATITGGVAFMNHAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEAD 160
Query: 319 TLFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 161 RMLDMGFAQDIETI 174
>gi|146329248|ref|YP_001209905.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
gi|146232718|gb|ABQ13696.1| ATP-dependent RNA helicase [Dichelobacter nodosus VCS1703A]
Length = 442
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 31/235 (13%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F ELGL ++++ + + G P+ IQ IP L G+ ++LS+ +GSG+T A++LP++
Sbjct: 3 NTFSELGLSTQILRTISRHGYEKPTPIQARAIPLALQGRDLLLSAQTGSGKTAAFVLPIL 62
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISH 259
Q QL E P K PRA+++ T E A Q + ++
Sbjct: 63 Q---QLAAE-------------------PTKSKLPRALIVIPTRELAQQVQDSVFQYSRE 100
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S GG + + + +++ATP +L H+ + ++ IRY+VLDEAD
Sbjct: 101 FKELYSITLVGGTAYQKQIRALKKGVSIVVATPGRLLDHVREGHLDLSQIRYLVLDEADR 160
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF ++ I +K Q QTI+ +A +G+ + E+
Sbjct: 161 MLDMGFSDDMHAI--------IKQCPQNRQTIMSSATWDGNVGKIAAGFTHNAEK 207
>gi|90580587|ref|ZP_01236392.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
S14]
gi|90438245|gb|EAS63431.1| putative ATP-dependent RNA helicase SrmB [Photobacterium angustum
S14]
Length = 416
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F EL L +E+++A+E++G P+ +Q IP L+GK V+ S+ +G+G+T A+LLP+
Sbjct: 1 MKDFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q HLQ P K P R ++L T E A Q A+ ++
Sbjct: 61 IQ---------HLQ-------------DFPRKRPGPARILILTPTRELAIQVADQARALA 98
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L GG+S ++ +++ATP ++++IE C I ++LDEAD
Sbjct: 99 KYTTLKVFTITGGISYDEHAEMLGKTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEAD 158
Query: 319 TLFDRGFGPEISKI 332
+ D GFG + ++
Sbjct: 159 RMLDMGFGKIVERL 172
>gi|410637923|ref|ZP_11348493.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
gi|410142609|dbj|GAC15698.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola lipolytica E3]
Length = 404
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 26/226 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+EL L ++ +AV +MG P+ IQ + IP + G+ ++ ++ +G+G+T A+LLP Q
Sbjct: 2 FEELELDEKLCQAVAEMGYSTPTSIQSLVIPPAMEGQDILANAPTGTGKTAAFLLPACQF 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+H P R ++L T E A Q + A I+
Sbjct: 62 LLDFPRQH---------------------PGSCRILILTPTRELALQVYEQALQITKHTD 100
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ + + +L+ATP + +HIE + C DI +VLDEAD + D
Sbjct: 101 LVCGVITGGINYGTDRETLEKNLDILVATPGRLFEHIEKESFDCRDIESLVLDEADRMLD 160
Query: 323 RGFGPEISKILNPLKDSA-LKSNGQGFQTILVTAAIAEMLGEQLSS 367
GF S I+N + A + F L A IA + L++
Sbjct: 161 MGF----SAIVNQIAAEARWRKQSMLFSATLEGAGIARFAKDLLTN 202
>gi|145300478|ref|YP_001143319.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418362912|ref|ZP_12963530.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853250|gb|ABO91571.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
subsp. salmonicida A449]
gi|356685918|gb|EHI50537.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 417
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 20/195 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF EL L + + + ++G P+ IQ IP +L G+ ++ + +G+G+T A++LPL
Sbjct: 3 IASFAELALSPRLQQTLSELGYAAPTPIQARAIPVILTGRDLMAGAQTGTGKTAAFVLPL 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
++ QL+ Q D A +P+ RA+VL T E A Q F
Sbjct: 63 LE-----------QLM---QHPASDTA----RPI--RALVLVPTRELAVQVFDSVVRYGQ 102
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S++ GGVS A + A + +LIATP +L H+ +S + + ++V DEAD
Sbjct: 103 GTGLTSALVYGGVSIAAQVEALQAGVDLLIATPGRLLDHLRQGALSLEHLSHLVFDEADR 162
Query: 320 LFDRGFGPEISKILN 334
+ D GF EI +L
Sbjct: 163 MLDMGFMDEIKALLK 177
>gi|421888857|ref|ZP_16319933.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia
solanacearum K60-1]
gi|378965799|emb|CCF96681.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal)(rhlE-like) [Ralstonia
solanacearum K60-1]
Length = 597
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 132/261 (50%), Gaps = 22/261 (8%)
Query: 115 PQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA 174
PQ + +++ S+ S+ NA S+F LGL +++A+ ++ P+ +Q IPA
Sbjct: 4 PQLDGGAIAHTESDTPNSNALNATAASAFAALGLDERIVRALGEVNYTTPTPVQAQAIPA 63
Query: 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLR-RDEALLPMKP- 232
L+G+ ++++S +GSG+T A++LP +Q S+ E ++ G Q ++ R P KP
Sbjct: 64 CLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQRPRMDGAPQRIKGRRPRPAPAKPS 123
Query: 233 ---MHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGML 288
+ P R + L T +A G H+ + + CA S+ G K L+ ++ P ++
Sbjct: 124 LLVLTPTRELALQVTTATAQYGRHLRRIV--CA----SILGGMPYPKQLDMLARMP-DII 176
Query: 289 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 348
IATP +L HI+ + + +V DEAD + D GF +I I+ +S
Sbjct: 177 IATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADDIEAIVGATPES--------- 227
Query: 349 QTILVTAAIAEMLGEQLSSLM 369
+ +L+ +A + EQL+ M
Sbjct: 228 RQMLMFSATMDRRIEQLAERM 248
>gi|402084250|gb|EJT79268.1| ATP-dependent RNA helicase HAS1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 615
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 107/204 (52%), Gaps = 23/204 (11%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTL 193
S+A +F ELGL +KA+++MG +EIQ GIP +L GK V+ ++ +GSG+TL
Sbjct: 127 ASDATAAQAFDELGLSENTMKAIKEMGFDKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTL 186
Query: 194 AYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT-TEESADQGFH 252
A+L+P V +MLR L KP + +++ + T E A Q F
Sbjct: 187 AFLIPAV------------------EMLRS----LKFKPRNGTGVIVVSPTRELALQIFG 224
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+A+ + + GG + +A + + + +LIATP +L H+++ ++R +
Sbjct: 225 VARNLMQFHSQTYGICIGGANRRAEVEKLSKGVNLLIATPGRLLDHLQNTPFVFKNLRSL 284
Query: 313 VLDEADTLFDRGFGPEISKILNPL 336
V+DEAD + + GF E+ +I+ L
Sbjct: 285 VIDEADRILEIGFEDEMRQIIKIL 308
>gi|430808618|ref|ZP_19435733.1| RNA helicase, partial [Cupriavidus sp. HMR-1]
gi|429498999|gb|EKZ97465.1| RNA helicase, partial [Cupriavidus sp. HMR-1]
Length = 423
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 16/197 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV + G P+ IQ IPA+L G ++ + +G+G+T + LP++Q
Sbjct: 2 SFSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLP--MKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ S+ R + P +P + RA+VL T E A Q +
Sbjct: 62 LLSE-------------SAARANGGNAPRGARP-NVRALVLTPTRELAAQVEESVRNYGK 107
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L S + GGV + + +++ATP +L H+ R + + +VLDEAD
Sbjct: 108 YLKLRSMVMFGGVGINPQIEALRRGVDIVVATPGRLLDHVAQRTIDLSHVELLVLDEADR 167
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF +I K+LN L
Sbjct: 168 MLDMGFIHDIRKVLNVL 184
>gi|152995016|ref|YP_001339851.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835940|gb|ABR69916.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 463
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 92/192 (47%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL A ++KA+E G PS IQ IPA+L G+ V+ ++ +G+G+T + LPL++
Sbjct: 6 SFNKLGLSAPILKAIEDQGYTEPSAIQAQAIPAILEGQDVMAAAQTGTGKTAGFTLPLLE 65
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S+ + Q+ RA+VL T E A Q K
Sbjct: 66 ILSKGENAQSNQV---------------------RALVLTPTRELAAQVAESVKNYGQHL 104
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV +LIATP ++ + V D + +VLDEAD +
Sbjct: 105 SLKSTVVFGGVKINPQMMALRRGADILIATPGRMMDLYNQKAVRFDKLEVLVLDEADRML 164
Query: 322 DRGFGPEISKIL 333
D GF +I KIL
Sbjct: 165 DMGFIHDIKKIL 176
>gi|85059773|ref|YP_455475.1| ATP-dependent RNA helicase SrmB [Sodalis glossinidius str.
'morsitans']
gi|84780293|dbj|BAE75070.1| ATP-dependent RNA helicase [Sodalis glossinidius str. 'morsitans']
Length = 447
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V+ F EL L +++ A+ G P+ IQ IPA ++G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTQFSELELHEDLLAAISDKGFERPTAIQAEAIPAAMDGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 258
+Q H L P K P R +++ T E A Q AK ++
Sbjct: 63 LQ--------HLLDF--------------PRKKSGPPRVLIVTPTRELAMQVAEQAKQLA 100
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
LD + GGV+ +V + +++AT +LQ+I++ N C + ++LDEAD
Sbjct: 101 AHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD 160
Query: 319 TLFDRGFGPEISKI 332
+ D GF ++ +I
Sbjct: 161 RMLDMGFALDVEQI 174
>gi|417948576|ref|ZP_12591720.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809523|gb|EGU44640.1| ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 188
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL + ++KAV K G P+ IQ IP VL+GK+++ ++ +G+G+T +++LP++++
Sbjct: 3 FSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
S+ G TQ +R RA++L T E A Q K +
Sbjct: 63 LSK----------GETQRKKR-----------IRAVILTPTRELAVQVEQNIKKYAKFLN 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S GGVS + +D + +L+ATP ++ R V D++ +VLDEAD + D
Sbjct: 102 LTSLAMYGGVSYQHQKDRLIEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEADRMLD 161
Query: 323 RGFGPEISKILNPL 336
GF +I+KI+ L
Sbjct: 162 MGFIEDINKIIARL 175
>gi|256079059|ref|XP_002575808.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353230863|emb|CCD77280.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 625
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 34/228 (14%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
VSSF EL L ++K++ +M L P+ IQC IP L + + + +GSG+TLA+LLP+
Sbjct: 124 VSSFIELSLAKPLLKSLTEMSLDKPTPIQCACIPVALLHRDICACARTGSGKTLAFLLPV 183
Query: 200 VQVYSQ--LDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA-KF 256
++ ++ D H + RA+V+ T E A Q F++A K
Sbjct: 184 LERLAKKSTDFNHAVT----------------------RALVISPTRELAVQIFNVAEKL 221
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLD 315
+ +C +L + GG+ + E +++ATP ++ H+ + + + I Y+VLD
Sbjct: 222 VKYCPKLRIQLAAGGLDLHSQEASLRLNPDLVVATPGRLIDHLSNAPSFNLQHIEYLVLD 281
Query: 316 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
EAD L D F +I +I +K QT+L +A + E + E
Sbjct: 282 EADKLLDEYFAEQIGEI--------IKFCSTKRQTLLFSATMTESVKE 321
>gi|229526712|ref|ZP_04416116.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
gi|229336870|gb|EEO01888.1| ATP-dependent RNA helicase [Vibrio cholerae bv. albensis VL426]
Length = 422
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 18/200 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E+ +F +LGL + ++ A+ ++G+ P+ IQ IP VL GK V+ + +G+G+T A+
Sbjct: 2 SELSITFSQLGLDSRLLNALSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q + I Q +R+ RA+VL T E A Q +
Sbjct: 62 LPLIQRF-------------IEQPWQREA-----NSKEIRALVLVPTRELAQQVLDSLQA 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L GG S K + + +LIATP +L H +++ + +VLDE
Sbjct: 104 YAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ ++L L
Sbjct: 164 ADRMLDMGFMPDLQRVLRRL 183
>gi|410085533|ref|ZP_11282252.1| ATP-dependent RNA helicase SrmB [Morganella morganii SC01]
gi|421493381|ref|ZP_15940738.1| SRMB [Morganella morganii subsp. morganii KT]
gi|455738802|ref|YP_007505068.1| ATP-dependent RNA helicase SrmB [Morganella morganii subsp.
morganii KT]
gi|400192549|gb|EJO25688.1| SRMB [Morganella morganii subsp. morganii KT]
gi|409768242|gb|EKN52306.1| ATP-dependent RNA helicase SrmB [Morganella morganii SC01]
gi|455420365|gb|AGG30695.1| ATP-dependent RNA helicase SrmB [Morganella morganii subsp.
morganii KT]
Length = 448
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 29/196 (14%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F EL L E+I+A++ G P+ IQ IPA L+ + ++ S+ +G+G+T AYLLP +
Sbjct: 4 TTFSELELNDELIRALDAKGYERPTAIQEATIPAALDNRDILGSAPTGTGKTAAYLLPAI 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE----SADQGFHMAKF 256
Q S + K PR ++L T E ADQ +F
Sbjct: 64 QHLSDFPRK---------------------KSGPPRVLILTPTRELAMQVADQAREFCQF 102
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H D + GGV+ +V + +++AT +LQ+I++ N C + ++LDE
Sbjct: 103 THH----DVATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVEILILDE 158
Query: 317 ADTLFDRGFGPEISKI 332
AD + D GF +I I
Sbjct: 159 ADRMLDMGFANDIETI 174
>gi|441504834|ref|ZP_20986826.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441427416|gb|ELR64886.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 415
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 104/195 (53%), Gaps = 23/195 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL A ++KAV ++G P+ IQ IP L GK+++ ++ +G+G+T +++LP++++
Sbjct: 3 FSKLGLSAPIVKAVNELGYKAPTPIQEKAIPVALTGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA 261
+ G TQ +R RA+VL T E A Q ++AK+ H
Sbjct: 63 LRE----------GQTQRKKR-----------IRALVLAPTRELAVQVEDNIAKYSKHL- 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S GGV SK + + +L+ATP +L R V +++ +VLDEAD +
Sbjct: 101 NLTSLAMYGGVDSKQQKQKLIEGVDILVATPGRLLDMYTQRAVHFEEVEMLVLDEADRML 160
Query: 322 DRGFGPEISKILNPL 336
D GF +I+KI+ L
Sbjct: 161 DMGFIEDINKIIERL 175
>gi|74191640|dbj|BAE30391.1| unnamed protein product [Mus musculus]
Length = 622
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDSLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|341892664|gb|EGT48599.1| hypothetical protein CAEBREN_09605 [Caenorhabditis brenneri]
Length = 813
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 34/220 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
+Q+LGL + KA+EK G P+ IQ IP +++GK VV S +GSG+T A+++P++Q
Sbjct: 26 WQQLGLDHTIFKAIEKKGFSQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQK 85
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
D + GI RA+++ T E A Q F + K +
Sbjct: 86 LKGRDTK------GI------------------RALMVSPTRELALQTFKVVKELGRFTG 121
Query: 263 LDSSMENGG-VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L + GG V + + P +L+ATP +L I + ++ ++YVV DEAD LF
Sbjct: 122 LRCACLVGGDVLEEQFSTIHENP-DILLATPGRLLHVIVEMDLRLSFVQYVVFDEADRLF 180
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+ GF ++++ L + +S QT+L +A + +ML
Sbjct: 181 EMGFQDQLTETLKRIPESR--------QTLLFSATLPKML 212
>gi|89070152|ref|ZP_01157481.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
gi|89044269|gb|EAR50415.1| ATP-dependent RNA helicase RhlE [Oceanicola granulosus HTCC2516]
Length = 477
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q +
Sbjct: 61 IT------------------LLHRGRARARM----PRSLVLCPTRELAAQVAENFDIYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HTKLTKALLIGGVSFKEQDQLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I
Sbjct: 159 MLDMGFIPDIERIFG 173
>gi|74207549|dbj|BAE40025.1| unnamed protein product [Mus musculus]
Length = 622
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD++ D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADSMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|47222980|emb|CAF99136.1| unnamed protein product [Tetraodon nigroviridis]
Length = 509
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 35/226 (15%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L ++K ++K G+ P+ IQ G+P VL+G+ ++ + +GSG+TL + LP+
Sbjct: 99 IKSFREMKLPPAILKGLKKKGIVHPTPIQIQGMPTVLSGRDMIGIAFTGSGKTLVFTLPI 158
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++ +
Sbjct: 159 IMFC--LEQEKRLPFC---------------KREGPYGLIICPSRELARQTHGIIEY--Y 199
Query: 260 CA--------RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
C +L +++ GG+S K +V + M++ATP ++ ++ + VS D RY
Sbjct: 200 CKLLEEEGAPQLRTALCIGGMSVKEQMEVIKHGVHMMVATPGRLMDLLQKKMVSLDICRY 259
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+ LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 260 LALDEADRMIDMGFEEDIRTIFSYFK-------GQR-QTLLYSATM 297
>gi|407699096|ref|YP_006823883.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Black
Sea 11']
gi|407248243|gb|AFT77428.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Black
Sea 11']
Length = 408
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + AV MG P+ IQ + IP L+G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 TFEELELDEALCHAVADMGFDTPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ RR +P R ++L T E A Q + A I+
Sbjct: 62 F--------------LLDYPRR-------QPGATRILILTPTRELALQVYEQALAITKHT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
++ + GG++ ++ + + +L+ATP +L+HIE C DI ++LDEAD +
Sbjct: 101 QIVCGVITGGINYGTDKETLSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRML 160
Query: 322 DRGFGPEISKI 332
D GF +++I
Sbjct: 161 DMGFSTVVNQI 171
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL ++ ++++ L P+ IQ IP VL G+ V+ + +G+G+T A+ LP++
Sbjct: 12 FSQLGLSKALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPIL-- 69
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP---RAIVLCTTEESADQGFHMAKFISH 259
H L P KP P R ++L T E + Q K +
Sbjct: 70 -------HRLA---------------PGKPAGPKKARVLILSPTRELSAQIAKTVKDLGR 107
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S++ GGVS + + + +LIATP ++ IE R VS ++I VVLDEAD
Sbjct: 108 KLSLRSAVVVGGVSIRPQIKTLASGVDVLIATPGRLMDLIEQRAVSLNEIEVVVLDEADQ 167
Query: 320 LFDRGFGPEISKIL 333
+ D GF P I +IL
Sbjct: 168 MLDIGFMPAIKRIL 181
>gi|355750468|gb|EHH54806.1| hypothetical protein EGM_15715 [Macaca fascicularis]
Length = 622
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 124/256 (48%), Gaps = 31/256 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATMPKKIQNFAKSALVKPV 394
Query: 374 RDNAGKVTAMLLEMDQ 389
N G+ A LE+ Q
Sbjct: 395 TINVGRAGAASLEVIQ 410
>gi|309779776|ref|ZP_07674531.1| ATP-dependent RNA helicase RhlE, partial [Ralstonia sp. 5_7_47FAA]
gi|308921353|gb|EFP66995.1| ATP-dependent RNA helicase RhlE [Ralstonia sp. 5_7_47FAA]
Length = 404
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 14/195 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 13 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILRGGDLLAGAQTGTGKTAGFTLPLLH 72
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S V Q +R P+ RA+VL T E A Q +
Sbjct: 73 RLSAAQPNK----VQTPQGMR-----FPI-----RALVLTPTRELAAQVEESVRAYGKYL 118
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV D + +++ATP +L H+ R + I +VLDEAD +
Sbjct: 119 PLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRML 178
Query: 322 DRGFGPEISKILNPL 336
D GF +I KILN L
Sbjct: 179 DMGFIHDIRKILNIL 193
>gi|386313562|ref|YP_006009727.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319426187|gb|ADV54261.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 467
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 21/194 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL ++KA+ ++G P+ IQ IP +L+GK+V+ ++ +G+G+T +++LPL+Q+
Sbjct: 3 FSKLGLSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLLQM 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ + ++P RAI+L T E A Q + +
Sbjct: 63 FADAPK---------------------IRPKRVRAIILTPTRELAVQVEENIRQYAKYLP 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S GGV + + + +L+ATP +L R + D++ +VLDEAD + D
Sbjct: 102 LTSMAMYGGVDAAPQKKKLIEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLD 161
Query: 323 RGFGPEISKILNPL 336
GF +I+KI+ L
Sbjct: 162 MGFIEDINKIIEKL 175
>gi|300705099|ref|YP_003746702.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
CFBP2957]
gi|299072763|emb|CBJ44116.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum
CFBP2957]
Length = 547
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 VYS--QLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 258
S Q ++ H P +P RA+VL T E A Q +
Sbjct: 62 RLSAAQPNKVH-----------------TPHGMRYPVRALVLTPTRELAAQVEESVRAYG 104
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L S + GGV D + +++ATP +L H+ R + I +VLDEAD
Sbjct: 105 KYLPLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEAD 164
Query: 319 TLFDRGFGPEISKILNPL 336
+ D GF +I KILN L
Sbjct: 165 RMLDMGFIHDIRKILNIL 182
>gi|196015847|ref|XP_002117779.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
gi|190579664|gb|EDV19755.1| hypothetical protein TRIADDRAFT_51106 [Trichoplax adhaerens]
Length = 569
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 23/204 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +F+E+ +I +++K G+ P+ IQ GIPAVL G+ ++ + +GSG+TL + LPL
Sbjct: 127 VKTFKEMKFPKSIIHSLKKQGITHPTPIQIQGIPAVLFGRDMIGIAFTGSGKTLVFTLPL 186
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L V R+E P +++C + E A Q ++ K
Sbjct: 187 IMF--ALEQETGLPFV-------RNEG--------PYGLIMCPSRELARQTYNTIKRFCQ 229
Query: 260 CARLDSSME------NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
D E GG+S K D + + +ATP ++ ++ + +S D RY+
Sbjct: 230 ALTADGHPEIRTMLCIGGISMKEQTDAMRRGVHIAVATPGRLMDMLDKKYLSLDICRYLA 289
Query: 314 LDEADTLFDRGFGPEISKILNPLK 337
+DEAD + D GF ++ + + K
Sbjct: 290 IDEADRMIDMGFEEDMRTVFSYFK 313
>gi|340785392|ref|YP_004750857.1| ATP-dependent RNA helicase RhlE [Collimonas fungivorans Ter331]
gi|340550659|gb|AEK60034.1| ATP-dependent RNA helicase RhlE [Collimonas fungivorans Ter331]
Length = 433
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 96/198 (48%), Gaps = 25/198 (12%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
VV SF LGL +++AV + G P+ +Q IPA+L G V+ ++ +GSG+T A+ LP
Sbjct: 13 VVMSFSSLGLSPAILQAVAERGYVTPTPVQIAAIPAILRGGDVLAAAQTGSGKTAAFALP 72
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
L+Q+ E KP R +VL T E A Q + ++
Sbjct: 73 LLQLLQDSPGE---------------------KPRRLRVLVLVPTRELAQQTAEAIRLLA 111
Query: 259 HCA--RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315
A L + GGVS + + D+ +++ATP +L IE VS + +VLD
Sbjct: 112 QAAPQSLKIAALFGGVSINPQMMDLRGGA-DIVVATPGRLLDLIEHNAVSIAAVSSLVLD 170
Query: 316 EADTLFDRGFGPEISKIL 333
EAD L D GF EI +IL
Sbjct: 171 EADRLLDMGFSDEIGRIL 188
>gi|28901323|ref|NP_800978.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus RIMD
2210633]
gi|417323065|ref|ZP_12109595.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
gi|28809870|dbj|BAC62811.1| ATP-dependent RNA helicase, DEAD box family [Vibrio
parahaemolyticus RIMD 2210633]
gi|328469261|gb|EGF40207.1| DEAD-box ATP dependent DNA helicase [Vibrio parahaemolyticus 10329]
Length = 448
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 29/199 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++K ++ P++IQ IP + GK ++ SS +GSG+TLA++LP
Sbjct: 7 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLP---- 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFIS 258
ML + PRA++L T E A Q + M +S
Sbjct: 63 -----------------MLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLS 105
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ A L EN KAL ++ATP + H+E R++ D + ++LDEAD
Sbjct: 106 YDAALILGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLYLDGLETLILDEAD 161
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF PE+ +I N K
Sbjct: 162 RMLDLGFAPELRRIHNAAK 180
>gi|392393902|ref|YP_006430504.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390524980|gb|AFM00711.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 398
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 125/234 (53%), Gaps = 33/234 (14%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E SF++LG+ AE+++A+EK G+ P+EIQ IP +L+ + V S +GSG+TLAYLL
Sbjct: 2 ETSHSFKQLGIHAELLEALEKEGIAQPTEIQKATIPLILSNRDVAGQSETGSGKTLAYLL 61
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
P ++ ++D +L+R+ L + P H A+ + +S Q H+A I
Sbjct: 62 P---IFQKID------------LLKRENQALILTPTHELALQVHRQIQSLSQ--HLAATI 104
Query: 258 SHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ A + G V+ ++ +E + P +++ + +L+ I+ R +S ++ +VLDE
Sbjct: 105 TSAAII------GNVNITRQIEKLKEKP-HIIVGSAGRILELIQKRKISPQSLKTIVLDE 157
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
AD L D K + +K + LK+ + Q +L +A +++ E+ S ++
Sbjct: 158 ADQLLD-------EKNIQTVK-AVLKTTYKDSQILLFSATLSQETIERASGFLK 203
>gi|153835973|ref|ZP_01988640.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
gi|308094943|ref|ZP_05892523.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AN-5034]
gi|308095142|ref|ZP_05903781.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus Peru-466]
gi|308125529|ref|ZP_05775749.2| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus K5030]
gi|433660511|ref|YP_007301370.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
gi|149750727|gb|EDM61472.1| ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus AQ3810]
gi|308085569|gb|EFO35264.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus Peru-466]
gi|308092338|gb|EFO42033.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AN-5034]
gi|308112170|gb|EFO49710.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus K5030]
gi|432511898|gb|AGB12715.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
Length = 444
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 29/199 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++K ++ P++IQ IP + GK ++ SS +GSG+TLA++LP
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLP---- 58
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFIS 258
ML + PRA++L T E A Q + M +S
Sbjct: 59 -----------------MLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLS 101
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ A L EN KAL ++ATP + H+E R++ D + ++LDEAD
Sbjct: 102 YDAALILGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLYLDGLETLILDEAD 157
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF PE+ +I N K
Sbjct: 158 RMLDLGFAPELRRIHNAAK 176
>gi|294083671|ref|YP_003550428.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663243|gb|ADE38344.1| Superfamily II DNA and RNA helicase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 464
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 104/195 (53%), Gaps = 24/195 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL E+ +AV ++G P+ IQ IP +L G+ ++ S+ +G+G+T ++ LP++ +
Sbjct: 3 FSDLGLSDELSQAVAELGYESPTPIQEKSIPIILMGRDILGSAQTGTGKTASFTLPMIDI 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA 261
+ R +A +P R+++L T E A Q KF +H
Sbjct: 63 LAS----------------GRAKARMP------RSLILAPTRELAAQVAESFEKFSTHH- 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L+ ++ GGVS + + +LIATP +L H E V +D++ +V+DEAD +
Sbjct: 100 KLNMALLIGGVSFSDQNTALDKGVDVLIATPGRLLDHFERGKVMLNDVKVLVIDEADRML 159
Query: 322 DRGFGPEISKILNPL 336
D GF P++ +I++ L
Sbjct: 160 DMGFIPDVERIVSLL 174
>gi|213510948|ref|NP_001133799.1| probable ATP-dependent RNA helicase DDX41 [Salmo salar]
gi|209155372|gb|ACI33918.1| Probable ATP-dependent RNA helicase DDX41 [Salmo salar]
Length = 615
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 35/226 (15%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++K ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 173 IKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPI 232
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++ +
Sbjct: 233 IMF--SLEQEKRLPFC---------------KSEGPYGLIICPSRELAKQTHTIIEY--Y 273
Query: 260 CARLD--------SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
C L+ S + GG+S K +V + M++ATP ++ ++ + +S D RY
Sbjct: 274 CKLLEEEGAPHMRSVLCIGGMSVKDQMEVVKHGVHMMVATPGRLMDLLQKKMISLDICRY 333
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+ LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 334 LALDEADRMIDMGFEEDIRTIFSYFK-------GQR-QTLLFSATM 371
>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 435
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +LGL + +++A+EK G PS IQ IPAVL+GK V+ ++ +G+G+T A+ LP++Q
Sbjct: 2 TFDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
R A P+KP RA++L T E A Q
Sbjct: 62 ---------------------RLNASAPIKPHRIRALILTPTRELAAQVAQSVSTYGLHT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV + + +LIATP +L V ++ +VLDEAD +
Sbjct: 101 PLKSAVVFGGVKINSQIAQLRRGVDILIATPGRLLDLHGQGEVDFGELEILVLDEADRML 160
Query: 322 DRGFGPEISKILNPL 336
D GF +I +IL L
Sbjct: 161 DMGFIHDIRRILKLL 175
>gi|254466325|ref|ZP_05079736.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
gi|206687233|gb|EDZ47715.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium Y4I]
Length = 467
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFTDLNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q +
Sbjct: 61 IT------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HVKLTKALLIGGVSFKEQDALIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 159 MLDMGFIPDIERIFS 173
>gi|411010727|ref|ZP_11387056.1| ATP-dependent RNA helicase RhlE [Aeromonas aquariorum AAK1]
Length = 415
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 20/195 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF +L L + + + ++G P+ +Q IP +L G+ ++ + +G+G+T A++LPL
Sbjct: 3 IASFADLALSPRLQQTLTELGYVAPTPVQASAIPVILAGRDLMAGAQTGTGKTAAFVLPL 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
++ Q+L+ + P +P+ RA+VL T E A Q +
Sbjct: 63 LE-----------------QLLQHPTSDAP-RPI--RALVLVPTRELAVQVHESVTRYAK 102
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S++ GGVS A + A + +LIATP +L H+ +S +R++V DEAD
Sbjct: 103 GTDLTSTLVYGGVSIAAQVEALKAGVDLLIATPGRLLDHLRQGALSLAALRHLVFDEADR 162
Query: 320 LFDRGFGPEISKILN 334
+ D GF EI +L
Sbjct: 163 MLDMGFMDEIKALLK 177
>gi|336311678|ref|ZP_08566639.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
gi|335864792|gb|EGM69861.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
Length = 467
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 21/194 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F LGL ++KA+ ++G P+ IQ IP +L+GK+V+ ++ +G+G+T +++LPL+Q+
Sbjct: 3 FSTLGLSEPIVKAITELGYSTPTPIQAKAIPVILSGKNVLGAAQTGTGKTASFVLPLLQM 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ + ++P RAI+L T E A Q + +
Sbjct: 63 FADSPK---------------------IRPKRVRAIILTPTRELAVQVEENIRQYAKYLP 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S GGV + + + +L+ATP +L R + D++ +VLDEAD + D
Sbjct: 102 LTSMAMYGGVDAAPQKKRLIEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLD 161
Query: 323 RGFGPEISKILNPL 336
GF +I+KI+ L
Sbjct: 162 MGFIEDINKIIEKL 175
>gi|261855960|ref|YP_003263243.1| DEAD/DEAH box helicase [Halothiobacillus neapolitanus c2]
gi|261836429|gb|ACX96196.1| DEAD/DEAH box helicase domain protein [Halothiobacillus
neapolitanus c2]
Length = 469
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 18/192 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL E++ A++ +G P+ IQ IP VL+G+ ++ ++ +G+G+T + LPL
Sbjct: 2 SFAELGLMPELLTALDAVGYTSPTPIQREAIPIVLSGRDLLAAAQTGTGKTAGFTLPL-- 59
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
LQ + T +L P RA+VL T E A Q K
Sbjct: 60 ----------LQRLATTPVLH------PAPKHRIRALVLTPTRELASQVEESVKQYGQKL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S + GGV+ D + +L+ATP +L H+ NV + +VLDEAD +
Sbjct: 104 KLTSMVIFGGVNINPQRDRLQRKLDILVATPGRLLDHVGQGNVDLGGVEILVLDEADRML 163
Query: 322 DRGFGPEISKIL 333
D GF +I ++L
Sbjct: 164 DMGFIRDIKRVL 175
>gi|154416622|ref|XP_001581333.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121915559|gb|EAY20347.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 541
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 107/203 (52%), Gaps = 25/203 (12%)
Query: 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRT 192
+G++ + F G++ E+++ V G VP+ +Q IP +LNG+ ++++S +GSG+T
Sbjct: 113 AGNHIPPIIDFPGCGIRNEVLRNVAHNGYKVPTPVQRYSIPYILNGEDLIVTSQTGSGKT 172
Query: 193 LAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 252
A++LP++ QL+G P +P + LC T E A Q F
Sbjct: 173 AAFMLPVIT-----------QLIGTCH-----------SP-NPSCVALCPTRELAIQIFE 209
Query: 253 MAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
+ L ++ GG ++ + ++S I ++IATP ++ ++ ++ ++R+
Sbjct: 210 ETRKFCKGTDLKTTCVFGGAPITEQIRNLSRG-IDIVIATPGRLIDILKQHCITLSEVRF 268
Query: 312 VVLDEADTLFDRGFGPEISKILN 334
++LDEAD + D GF P++ +++N
Sbjct: 269 LILDEADRMLDMGFEPQMQEVIN 291
>gi|421889295|ref|ZP_16320341.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum K60-1]
gi|378965361|emb|CCF97089.1| ATP-dependent RNA helicase hydrolase [Ralstonia solanacearum K60-1]
Length = 545
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 VYS--QLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 258
S Q ++ H P +P RA+VL T E A Q +
Sbjct: 62 RLSAAQPNKVH-----------------TPHGMRYPIRALVLTPTRELAAQVEESVRAYG 104
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L S + GGV D + +++ATP +L H+ R + I +VLDEAD
Sbjct: 105 KYLPLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEAD 164
Query: 319 TLFDRGFGPEISKILNPL 336
+ D GF +I KILN L
Sbjct: 165 RMLDMGFIHDIRKILNIL 182
>gi|268553635|ref|XP_002634804.1| Hypothetical protein CBG13909 [Caenorhabditis briggsae]
Length = 845
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 41/243 (16%)
Query: 120 QQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
+QL + + K +G +Q+LGL + KA+EK G P+ IQ IP +++GK
Sbjct: 10 KQLQQSQNRKHKKAGG-------WQQLGLDHTIFKAIEKKGFNQPTPIQRKTIPCIMDGK 62
Query: 180 SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239
VV S +GSG+T A+++P++Q D + GI RA++
Sbjct: 63 DVVAMSRTGSGKTAAFVIPMLQKLKGRDTK------GI------------------RALM 98
Query: 240 LCTTEESADQGFHMAKFISHCARLDSSMENGG-VSSKALEDVSNAPIGMLIATPSEVLQH 298
+ T E A Q F + K + L + GG V + P +L+ATP +L
Sbjct: 99 VSPTRELALQTFKVVKELGRFTGLRCACLVGGDVLEDQFSTIHENP-DILLATPGRLLHV 157
Query: 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
I + ++ ++YVV DEAD LF+ GF ++++ L + +S QT+L +A +
Sbjct: 158 IVEMDLRLQFVQYVVFDEADRLFEMGFQDQLTETLKRIPESR--------QTLLFSATLP 209
Query: 359 EML 361
+ML
Sbjct: 210 KML 212
>gi|390568878|ref|ZP_10249170.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|420252763|ref|ZP_14755860.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|389939227|gb|EIN01064.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|398053794|gb|EJL45951.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 553
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 145/302 (48%), Gaps = 47/302 (15%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F ELGL A+++ A+ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 36 TFAELGLSADIVSALTAAGYKTPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 95
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEAL-----LPMKPMHPRAIVLCTTEESADQGFHMAK- 255
++QL + L + R A PM P +VL T E A Q A
Sbjct: 96 RFAQL----QITLASQPRESRESNAAGGRGRRPMPVARPSLLVLTPTRELAMQVTTAAST 151
Query: 256 FISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ H RL + GGV+ + L ++ P +L+ATP +L H+E + ++ +VL
Sbjct: 152 YGKHLKRLRTVSILGGVAYGQQLMLLAKNPE-ILVATPGRLLDHLERGRIDLSQLQMLVL 210
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG------------ 362
DEAD + D GF +I I+ + QT+L +A + +G
Sbjct: 211 DEADRMLDMGFIDDIETIVAATPATR--------QTMLFSATLDGKIGSLTGRLLKDPER 262
Query: 363 -------EQLSSLMECL----ERDNAGKVTAMLLE---MDQAEVFDLTESQ-DALKKKVV 407
EQ +++ + + +RD+ ++ LL +DQA VF T+S D+L ++
Sbjct: 263 IEIVQRMEQRTNIAQTVHYVDDRDHKDRLLDHLLRADGLDQAIVFTATKSDADSLAGRLA 322
Query: 408 EA 409
+A
Sbjct: 323 DA 324
>gi|207742395|ref|YP_002258787.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
gi|206593785|emb|CAQ60712.1| atp-dependent rna helicase protein [Ralstonia solanacearum IPO1609]
Length = 545
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 20/198 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++++AV ++G P+ IQ IPA+L G ++ + +G+G+T + LPL+
Sbjct: 2 SFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLH 61
Query: 202 VYS--QLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 258
S Q ++ H P +P RA+VL T E A Q +
Sbjct: 62 RLSAAQPNKVH-----------------TPHGMRYPIRALVLTPTRELAAQVEESVRAYG 104
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L S + GGV D + +++ATP +L H+ R + I +VLDEAD
Sbjct: 105 KYLPLKSMVMFGGVGINPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEAD 164
Query: 319 TLFDRGFGPEISKILNPL 336
+ D GF +I KILN L
Sbjct: 165 RMLDMGFIHDIRKILNIL 182
>gi|167518760|ref|XP_001743720.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777682|gb|EDQ91298.1| predicted protein [Monosiga brevicollis MX1]
Length = 787
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 33/223 (14%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +FQ +GL + +A+ + G VP+ IQ IP ++ G+ VV + +GSG+T A+L+PL
Sbjct: 1 MGAFQAMGLSQAVARAINRKGYKVPTPIQRKTIPLLMAGQDVVAMARTGSGKTAAFLIPL 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L ++H VGI RA+VL T E A Q F K +
Sbjct: 61 ---FERL--KNHSARVGI------------------RALVLSPTRELALQTFKFVKELGR 97
Query: 260 CARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ L S + GG S + D+ P +++ATP L I + +S YVV DEAD
Sbjct: 98 FSDLRSILILGGDSMDSQFGDMHTNP-DIVVATPGRFLHLIVEMELSLVTTEYVVFDEAD 156
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
LF+ GF ++ +I+ L D+ QT L +A + ++L
Sbjct: 157 RLFEMGFAEQLREIMARLPDTR--------QTTLFSATLPKVL 191
>gi|359441938|ref|ZP_09231822.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20429]
gi|359454227|ref|ZP_09243517.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20495]
gi|392533342|ref|ZP_10280479.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas arctica A
37-1-2]
gi|414070202|ref|ZP_11406189.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. Bsw20308]
gi|358036199|dbj|GAA68071.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20429]
gi|358048750|dbj|GAA79766.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20495]
gi|410807300|gb|EKS13279.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. Bsw20308]
Length = 408
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ RRD P R +V+ T E A Q + ++
Sbjct: 63 --------------LLDFPRRD-------PGFARVLVMTPTRELAYQIHEQCELLAKRTH 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ +++ +LIATP +++++E N + + +++DEAD + D
Sbjct: 102 LKIGVVTGGINYGTHKEIFEKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLD 161
Query: 323 RGFGPEISKILNPLKD 338
GF E+S+I + K+
Sbjct: 162 MGFKKEMSRICDEAKN 177
>gi|56477451|ref|YP_159040.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56313494|emb|CAI08139.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 463
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 30/222 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+FQELGL +++A+ G VP+ +Q IPA L G +++SS +GSG+T A+ LP
Sbjct: 2 TFQELGLHEALLQAIATTGYTVPTSVQEQAIPAALAGADLMVSSHTGSGKTAAFTLP--S 59
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
++ +D + P PR +VL T E A Q K +
Sbjct: 60 LHRLIDRK-------------------PAPGAGPRVLVLTPTRELAQQVEKAVKTYARNL 100
Query: 262 R-LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
R L+++ GG A + + P+ +++ATP ++ H+ R + DI +VLDEAD +
Sbjct: 101 RYLNTACLVGGAPFFAQAKLLSRPVDVVVATPGRLIDHLNRRKLKLSDIEVLVLDEADRM 160
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362
D GF +I I+ S QT+L +A + ++G
Sbjct: 161 LDMGFVEDIETIVAATPASR--------QTLLFSATLDGVVG 194
>gi|163792426|ref|ZP_02186403.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
BAL199]
gi|159182131|gb|EDP66640.1| DEAD/DEAH box helicase domain protein [alpha proteobacterium
BAL199]
Length = 446
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 28/272 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V F+ LGL +++ G P+ IQ IP +L G+ ++ + +G+G+T A+ LP+
Sbjct: 3 VQDFRSLGLAESLLRTAATCGYTTPTPIQVAAIPPLLAGRDLIGLAQTGTGKTAAFTLPM 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ H L G ++ P PRA++L T E A Q + +
Sbjct: 63 L---------HRLAAAGEKRI-----------PKAPRALILTPTRELAVQIAGVVETFGR 102
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L ++ +GGVS++ + ++IATP +L I R V D + Y VLDEAD
Sbjct: 103 SIGLRHALVHGGVSARPQAVALQRGVEVMIATPGRLLDLINQRAVFLDKVEYFVLDEADR 162
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGK 379
+ D GF ++ +I +AL + QT L +A + + + E SL+ ER
Sbjct: 163 MLDLGFVRDVKRI------AALVPANR--QTALFSATMPQSIIELTESLLRNPERVQITP 214
Query: 380 VTAMLLEMDQAEVFDLTESQDALKKKVVEAMD 411
+ + + Q+ +F ++ L +++ A D
Sbjct: 215 TSTPIERIQQSVMFVARANKRTLLARLLGAPD 246
>gi|410630699|ref|ZP_11341386.1| ATP-dependent RNA helicase RhlE [Glaciecola arctica BSs20135]
gi|410149665|dbj|GAC18253.1| ATP-dependent RNA helicase RhlE [Glaciecola arctica BSs20135]
Length = 410
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 56/291 (19%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F L L + AV+ +G P+ IQ IPA+L GK ++ + +G+G+T A+ LP++Q
Sbjct: 2 NFSSLALDKSLTDAVKTLGYTAPTPIQQQAIPAILEGKDIMAGAQTGTGKTAAFALPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
Q+++ +A P+ RA+VL T E A Q + +
Sbjct: 62 -----------------QLIKYTDAPRPI-----RALVLTPTRELAQQVYKSFLRYAENT 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L+ ++ GGVS +LIATP +L H+ +V ++ +V DEAD +
Sbjct: 100 QLNLAVAYGGVSINPQISAIEKGADILIATPGRLLDHMTKGSVDLSQLQTIVFDEADRML 159
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML-------------------- 361
D GF EI++IL+ + + QT+L +A E +
Sbjct: 160 DMGFKDEINRILSRVPNKR--------QTLLFSATFDETIFKLSKTLLNNPVLIEVNDRN 211
Query: 362 --GEQLSSLMECLERDNAGKVTAMLL---EMDQAEVFDLT-ESQDALKKKV 406
Q+ L+ ++RD ++T+ L+ Q +F T ++ D L K++
Sbjct: 212 AAASQVEQLVYTVDRDRKRELTSFLIGSKNWKQVLIFTRTKQTADELAKEM 262
>gi|85107031|ref|XP_962298.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
gi|74696531|sp|Q7S9J4.1|DBP10_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-10
gi|28923900|gb|EAA33062.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
Length = 934
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 38/245 (15%)
Query: 119 QQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG 178
Q++ SNI + K G FQ +GL A +++A+ + G VP+ IQ IP +L
Sbjct: 84 QRKSSNIQGKSVKKGGG-------FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILER 136
Query: 179 KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238
K VV + +GSG+T A+++P+++ + H VG RA+
Sbjct: 137 KDVVGMARTGSGKTAAFVIPMIERL-----KGHSPRVG------------------SRAL 173
Query: 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298
++ + E A Q + K + L + + GG S + + + ++IATP L
Sbjct: 174 IMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLHL 233
Query: 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
+ N+S I+YVV DEAD LF+ GF E+++IL+ L S QT+L +A +
Sbjct: 234 KVEMNLSLASIKYVVFDEADRLFEMGFATELTEILHALPPSR--------QTLLFSATLP 285
Query: 359 EMLGE 363
L E
Sbjct: 286 SSLVE 290
>gi|348532949|ref|XP_003453968.1| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
[Oreochromis niloticus]
Length = 336
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 117/252 (46%), Gaps = 46/252 (18%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ ++L ++++K SG FQ +GL + K V K G +P+ IQ +P +
Sbjct: 58 EPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVFKGVMKKGYKIPTPIQRKTVPVI 110
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235
L+GK VV + +GSG+T A+L+P+ + P
Sbjct: 111 LDGKDVVAMARTGSGKTAAFLIPMFEKLKA-----------------------PQAQTGA 147
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNA----PIGMLIAT 291
RA++L T E A Q K + L +++ GG +ED A P ++I T
Sbjct: 148 RALILTPTRELALQTMKFTKELGKFTGLKTALILGG---DRMEDQFAALHENP-DIIIGT 203
Query: 292 PSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTI 351
P ++ + + N+ + YVV DEAD LF+ GF ++ +I+ L D+ QT+
Sbjct: 204 PGRLMHVVMEMNLKLHSVAYVVFDEADRLFEMGFAEQLQEIIRRLPDTR--------QTL 255
Query: 352 LVTAAIAEMLGE 363
L +A + ++L E
Sbjct: 256 LFSATLPKLLVE 267
>gi|392341227|ref|XP_003754285.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Rattus
norvegicus]
Length = 796
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 354 IKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 413
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 414 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 456
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GGVS K + + +++ATP ++ ++ + VS D RY+
Sbjct: 457 LLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLA 516
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 517 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 552
>gi|336470872|gb|EGO59033.1| hypothetical protein NEUTE1DRAFT_60019 [Neurospora tetrasperma FGSC
2508]
gi|350291940|gb|EGZ73135.1| ATP-dependent RNA helicase dbp-10 [Neurospora tetrasperma FGSC
2509]
Length = 934
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 117/245 (47%), Gaps = 38/245 (15%)
Query: 119 QQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG 178
Q++ SNI + K G FQ +GL A +++A+ + G VP+ IQ IP +L
Sbjct: 84 QRKSSNIQGKSVKKGGG-------FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILER 136
Query: 179 KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238
K VV + +GSG+T A+++P+++ + H VG RA+
Sbjct: 137 KDVVGMARTGSGKTAAFVIPMIERL-----KGHSPRVG------------------SRAL 173
Query: 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298
++ + E A Q + K + L + + GG S + + + ++IATP L
Sbjct: 174 IMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMASNPDIIIATPGRFLHL 233
Query: 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
+ N+S I+YVV DEAD LF+ GF E+++IL+ L S QT+L +A +
Sbjct: 234 KVEMNLSLASIKYVVFDEADRLFEMGFATELTEILHALPPSR--------QTLLFSATLP 285
Query: 359 EMLGE 363
L E
Sbjct: 286 SSLVE 290
>gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
Length = 524
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 119/235 (50%), Gaps = 13/235 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 41 SFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHC 260
++QL + Q RR P+ P +VL T E A Q A + H
Sbjct: 101 RFAQLQKTQAQQPREPQSGDRRQRRPQPVA--RPGLLVLTPTRELAMQVTTAASTYGKHL 158
Query: 261 ARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 159 RRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEADR 217
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I + + QT+L +A + +G S L++ ER
Sbjct: 218 MLDMGFIDDIETI--------VAATPATRQTMLFSATLDGKIGSLTSRLLKEPER 264
>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 408
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 28/199 (14%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F E+GL A + +A++K LFVP+ IQ IP L GK ++ S+ +G+G+TLA+ +PL
Sbjct: 1 MNNFHEMGLPASLRQALDKNNLFVPTPIQIQAIPLALQGKDILGSAQTGTGKTLAFAIPL 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFIS 258
V A L +P A+V+ T E A Q + + K +S
Sbjct: 61 V-------------------------AKLLNEPNTGSALVIVPTRELAHQVTNEIRKLLS 95
Query: 259 HCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ L ++ GG + L + P ++I TP ++ HIE + + ++ +VLDE
Sbjct: 96 QNSALRVALLIGGEPIFRQLNQLQKKP-QIVIGTPGRIIDHIERKTLITRNVSVLVLDET 154
Query: 318 DTLFDRGFGPEISKILNPL 336
D +FD GFG +I +I+ L
Sbjct: 155 DRMFDMGFGVQIEEIMKHL 173
>gi|317488345|ref|ZP_07946905.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325830722|ref|ZP_08164106.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|316912552|gb|EFV34101.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|325487129|gb|EGC89572.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 443
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 43/236 (18%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S+FQ+LGL + AVE+MG P+ +Q IP VL G+ VV ++ +G+G+T A+ LPL
Sbjct: 32 STFQDLGLSETTLSAVERMGFTAPTPVQEQAIPLVLEGRDVVAAATTGTGKTAAFALPL- 90
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+ +G + +P PRA+V+ T E A Q + C
Sbjct: 91 -----------FERIGRAK-----------RPGSPRALVVSPTRELAQQ------IDAAC 122
Query: 261 ARLDSSMEN------GGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+L + GG K + I +L+ATP + +E V D+ +VL
Sbjct: 123 TQLAKASNRRMLTVMGGTKYKGQIAKLDRGIDVLVATPGRLYDLMERGVVKLRDVEVLVL 182
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
DEAD + D GF P + K++ S QT+L +A + + + +SS+++
Sbjct: 183 DEADRMLDMGFWPTMKKVVAATPSSR--------QTLLFSATLDRKVMQSVSSILK 230
>gi|417819886|ref|ZP_12466501.1| type III restriction enzyme, res subunit [Vibrio cholerae HE39]
gi|419828579|ref|ZP_14352070.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-1A2]
gi|419833504|ref|ZP_14356965.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A2]
gi|422920186|ref|ZP_16953516.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02A1]
gi|423810507|ref|ZP_17714558.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55C2]
gi|423844400|ref|ZP_17718291.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-59A1]
gi|423875325|ref|ZP_17721963.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-60A1]
gi|423941316|ref|ZP_17732881.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-40]
gi|423973068|ref|ZP_17736426.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-46]
gi|423999805|ref|ZP_17742968.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02C1]
gi|424011635|ref|ZP_17754480.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55B2]
gi|424021465|ref|ZP_17761218.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-59B1]
gi|424626875|ref|ZP_18065296.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A1]
gi|424627766|ref|ZP_18066099.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-51A1]
gi|424631566|ref|ZP_18069759.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-52A1]
gi|424638480|ref|ZP_18076447.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55A1]
gi|424642285|ref|ZP_18080127.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-56A1]
gi|424646892|ref|ZP_18084591.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-57A1]
gi|443525610|ref|ZP_21091768.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-78A1]
gi|340040744|gb|EGR01716.1| type III restriction enzyme, res subunit [Vibrio cholerae HE39]
gi|341631600|gb|EGS56484.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-02A1]
gi|408007876|gb|EKG45912.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-50A1]
gi|408018722|gb|EKG56153.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-55A1]
gi|408019538|gb|EKG56935.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-56A1]
gi|408026468|gb|EKG63474.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-52A1]
gi|408039187|gb|EKG75479.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-57A1]
gi|408060232|gb|EKG94934.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-51A1]
gi|408623652|gb|EKK96606.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-1A2]
gi|408637640|gb|EKL09668.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55C2]
gi|408645612|gb|EKL17251.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-60A1]
gi|408646687|gb|EKL18269.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-59A1]
gi|408650828|gb|EKL22103.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-61A2]
gi|408662729|gb|EKL33635.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-40]
gi|408666670|gb|EKL37448.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HE-46]
gi|408843905|gb|EKL84044.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-02C1]
gi|408862417|gb|EKM01933.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-59B1]
gi|408867598|gb|EKM06956.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-55B2]
gi|443456024|gb|ELT19733.1| type III restriction enzyme, res subunit [Vibrio cholerae HC-78A1]
Length = 422
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 18/200 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ + +G+G+T+A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTVAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q + I Q +R+ RA+VL T E A Q +
Sbjct: 62 LPLIQRF-------------IEQPWQRE-----TNSKEIRALVLVPTRELAQQVLDSLQA 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L GG S K + + +LIATP +L H +++ + +VLDE
Sbjct: 104 YAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ ++L L
Sbjct: 164 ADRMLDMGFMPDLQRVLRRL 183
>gi|187734531|ref|YP_001876643.1| DEAD/DEAH box helicase [Akkermansia muciniphila ATCC BAA-835]
gi|187424583|gb|ACD03862.1| DEAD/DEAH box helicase domain protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 423
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 20/196 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V ++F+ELGL A +++ +E + P+ IQ IP +L K ++ + +G+G+T A+ LP
Sbjct: 2 VSTTFRELGLSAPILRQLENLEYKTPTPIQAACIPLLLQNKDLMGLAQTGTGKTAAFALP 61
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
L+Q S+ + + V RA++L T E A Q + +
Sbjct: 62 LIQQLSERSGKPPGRRV--------------------RALILSPTRELAAQIHENIRAYA 101
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L +++ GGV + + +L+ATP ++ H+E R VS D + ++LDEAD
Sbjct: 102 RGLHLSTAVIFGGVGYASQFKELAGGLDILVATPGRLIDHLERRTVSLDGVETLILDEAD 161
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P + KI++
Sbjct: 162 HMLDMGFAPALKKIVS 177
>gi|403290044|ref|XP_003936143.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Saimiri
boliviensis boliviensis]
Length = 622
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 31/258 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATMPKKIQNFAKSALVKPV 394
Query: 374 RDNAGKVTAMLLEMDQAE 391
N G+ A L++ Q E
Sbjct: 395 TINVGRAGAASLDVIQEE 412
>gi|119945503|ref|YP_943183.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119864107|gb|ABM03584.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 433
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 118/246 (47%), Gaps = 33/246 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
S +GL AE++KAV+ G + IQ IP + +G ++ S+ +G+G+T A+ LP++
Sbjct: 2 SVDAIGLSAELLKAVKACGYKNLTPIQQQAIPIIRSGSDLLASAQTGTGKTAAFTLPILD 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ ++ E P +A++L T E A Q K S
Sbjct: 62 ILAKNANEK------------------PTTNTTIKALILTPTRELAAQVAANVKEYSQFL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + +GG S + + + +L+ATP +L+H+ RNV ++Y+ LDEAD +
Sbjct: 104 PLTSGVVSGGRSMDSQTKMLKVGVDVLVATPGRLLEHLTLRNVDLSHVKYLTLDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA---EMLGEQLSSLMECLE----R 374
D GF +I K++ +K Q QT++ +A + + L +Q+ + + LE
Sbjct: 164 DLGFLTDIQKLMEAIK--------QKHQTLMFSATFSNKVKTLAKQILTTPKTLEISPQN 215
Query: 375 DNAGKV 380
AGKV
Sbjct: 216 STAGKV 221
>gi|293397166|ref|ZP_06641440.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
gi|291420637|gb|EFE93892.1| ATP-dependent RNA helicase RhlE [Serratia odorifera DSM 4582]
Length = 447
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 21/196 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LP++Q
Sbjct: 2 SFETLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHC 260
+ S + D A+ +P+ RA++L T E A Q G ++ + H
Sbjct: 62 LLS-----------------KHDHAVKGRRPV--RALILTPTRELAAQIGENVQAYSKHL 102
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
RL S + GGVS + +L+ATP +L V I +VLDEAD +
Sbjct: 103 -RLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRM 161
Query: 321 FDRGFGPEISKILNPL 336
D GF +I ++L+ L
Sbjct: 162 LDMGFIHDIRRVLSKL 177
>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821, partial [Collinsella stercoris
DSM 13279]
gi|210160006|gb|EEA90977.1| DEAD/DEAH box helicase, partial [Collinsella stercoris DSM 13279]
Length = 595
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 127/278 (45%), Gaps = 38/278 (13%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
E S+GS A +F +LGL E++ AV MG P+ +Q IP L+G+ V+ ++ +G+
Sbjct: 28 EPSAGSAAGDGPTFADLGLSDEVLAAVADMGYTSPTPVQAASIPHALDGEDVLAAAQTGT 87
Query: 190 GRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
G+T A+LLP ++ H+ R A + P +V+ T E A Q
Sbjct: 88 GKTAAFLLPT------MNNLPHVP---------RGRARGRVAAQGPLMLVVTPTRELAQQ 132
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
+ + I+ C S GGVS D +LIATP + I+ S D +
Sbjct: 133 IEDVCRAIAKCTGHTSVTVVGGVSYNPQRDKLKRGCDILIATPGRLQDLIDQGACSLDQV 192
Query: 310 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369
+ +VLDEAD + D GF P + +I+ +D QT+L +A + E
Sbjct: 193 QVLVLDEADRMLDMGFLPAVRRIVGYTRDD--------RQTLLFSATLDEQA-------- 236
Query: 370 ECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVV 407
G +T ++ + + E+ +T + D +++ V+
Sbjct: 237 -------VGSITDLVHDPARVEIAPVTSTADTVEQYVL 267
>gi|120599060|ref|YP_963634.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146292869|ref|YP_001183293.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120559153|gb|ABM25080.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145564559|gb|ABP75494.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 467
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 21/194 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL ++KA+ ++G P+ IQ IP +L+GK+V+ ++ +G+G+T +++LPL+Q+
Sbjct: 3 FSKLGLSDPIVKAITELGYASPTPIQTKAIPVILSGKNVLGAAQTGTGKTASFVLPLLQM 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ + ++P RAI+L T E A Q + +
Sbjct: 63 FADAPK---------------------IRPKRVRAIILTPTRELAVQVEENIRQYAKYLP 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S GGV + + + +L+ATP +L R + D++ +VLDEAD + D
Sbjct: 102 LTSMAMYGGVDAAPQKKKLIEGVDILVATPGRLLDMYTQRAIHFDELSVLVLDEADRMLD 161
Query: 323 RGFGPEISKILNPL 336
GF +I+KI+ L
Sbjct: 162 MGFIEDINKIIEKL 175
>gi|426229383|ref|XP_004008770.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Ovis aries]
Length = 622
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 378
>gi|332534743|ref|ZP_08410571.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035830|gb|EGI72314.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
ANT/505]
Length = 408
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ RRD P R +V+ T E A Q + ++
Sbjct: 63 --------------LLDFPRRD-------PGFARVLVMTPTRELAYQIHEQCELLAKRTH 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ +++ +LIATP +++++E N + + +++DEAD + D
Sbjct: 102 LKIGVVTGGINYGTHKEIFEKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLD 161
Query: 323 RGFGPEISKILNPLKD 338
GF E+S+I + K+
Sbjct: 162 MGFKKEMSRICDEAKN 177
>gi|312884016|ref|ZP_07743733.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368474|gb|EFP96009.1| ATP-dependent RNA helicase SrmB [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 407
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 98/194 (50%), Gaps = 21/194 (10%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F EL L +++ A+++MG P++IQ IP L+G+ V+ S+ +G+G+T A++LP
Sbjct: 1 MIKNFAELDLDPDLLLAIDEMGYQRPTQIQAEAIPQALDGRDVLASAPTGTGKTAAFVLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q + +P R ++L T E A Q A+ ++
Sbjct: 61 ALQFLQDFPRK---------------------QPGPARILILTPTRELAMQVAEQARALA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL+ GGV + D+ +++ATP ++++IE C I +++LDEAD
Sbjct: 100 KHTRLNIFTITGGVQYQEHADILATTQDIVVATPGRLMEYIEAERFDCRAIEWLILDEAD 159
Query: 319 TLFDRGFGPEISKI 332
+ D GF P + ++
Sbjct: 160 RMLDMGFAPTVDRL 173
>gi|89075608|ref|ZP_01162009.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
gi|89048615|gb|EAR54188.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
Length = 446
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 23/191 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++K + + +EIQ IP + GK ++ SS +GSG+TLA+LLP +Q
Sbjct: 3 FKDLGLDPRLLKKINHLAFDRATEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQ- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+M R P PR ++L T E A Q F + ++
Sbjct: 62 ----------------RMYRSK----PFTRRDPRVLILTPTRELAKQVFAQLRTLNAGTP 101
Query: 263 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
D ++ GG + + ++ + N P+ ++ATP + H+E R+ D + ++LDEAD +
Sbjct: 102 YDGTLIVGGENFNDQVKALRNDPM-FVVATPGRLADHLEHRSTHLDGLEMLILDEADRIL 160
Query: 322 DRGFGPEISKI 332
D GF ++ +I
Sbjct: 161 DLGFEAQLRRI 171
>gi|83953889|ref|ZP_00962610.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
gi|83841834|gb|EAP81003.1| ATP-dependent RNA helicase RhlE [Sulfitobacter sp. NAS-14.1]
Length = 554
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 24/195 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+ + G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 21 MTKFSDLNLNPKVLKAINEAGYETPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPM 80
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFIS 258
+ +L R A M PR++VLC T E A Q + +
Sbjct: 81 IT------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTK 118
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H +L ++ GGVS + + + + +LIATP ++ H E + D++ +V+DEAD
Sbjct: 119 HL-KLTKALLIGGVSFGEQDKLIDKGVDVLIATPGRLIDHFERGKLILSDVKIMVVDEAD 177
Query: 319 TLFDRGFGPEISKIL 333
+ D GF P+I +I
Sbjct: 178 RMLDMGFIPDIERIF 192
>gi|380029382|ref|XP_003698353.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis florea]
Length = 772
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 38/244 (15%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E+ +++NI + K SG FQ + L ++K + K G +P+ IQ IP L
Sbjct: 20 EENEINNIKKKVYKKSGG-------FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALE 72
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237
G+ +V + +GSG+T +L+PL + L+ +A RA
Sbjct: 73 GRDIVAMARTGSGKTACFLIPLFE------------------KLKTRQA-----KAGARA 109
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297
++L T E A Q K + L +++ GG + + + +LIATP L
Sbjct: 110 LILSPTRELALQTLKFIKELGRFTGLKATLILGGDNMENQFSAIHGNPDILIATPGRFLH 169
Query: 298 HIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+ ++ ++I YVV DEAD LF+ GFG +I++I+N L +S QT+L +A +
Sbjct: 170 ICVEMDLQLNNIEYVVFDEADRLFEMGFGEQINEIINRLPESR--------QTLLFSATL 221
Query: 358 AEML 361
++L
Sbjct: 222 PKLL 225
>gi|259155174|ref|NP_001158829.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
gi|223647616|gb|ACN10566.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
Length = 875
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 38/248 (15%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ ++L ++++K SG FQ +GL + K V K G VP+ IQ IP +
Sbjct: 59 EPDTRELVRAQNKKKKKSGG-------FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVI 111
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235
L+GK +V + +GSG+T A+L+P+ + +P
Sbjct: 112 LDGKDMVAMARTGSGKTAAFLVPMFEKLK-----------------------VPQAQTGA 148
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q K + L +++ GG + ++I TP +
Sbjct: 149 RALILTPTRELALQTMKFTKELGKFTGLKTALILGGDRMDDQFAALHENPDIIIGTPGRL 208
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
+ + + N+ + YVV DEAD LF+ GF ++ +I+ L D+ QT+L +A
Sbjct: 209 MHVVMEMNLKLQSVEYVVFDEADRLFEMGFADQLQEIIRRLPDNR--------QTLLFSA 260
Query: 356 AIAEMLGE 363
+ ++L E
Sbjct: 261 TLPKLLVE 268
>gi|32565321|ref|NP_498260.2| Protein DDX-23 [Caenorhabditis elegans]
gi|351058526|emb|CCD65989.1| Protein DDX-23 [Caenorhabditis elegans]
Length = 730
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 139/308 (45%), Gaps = 72/308 (23%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +++E G E+ +AV+++G P+ IQ IP L + V+ + +GSG+T A+LLPL
Sbjct: 300 LRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPL 359
Query: 200 VQVYSQLDEEHHLQLVGITQM--LRRDEALLPMKPMHPRAIVLCTTEESADQ-------- 249
LV IT + + R E + + P AI++ T E A Q
Sbjct: 360 --------------LVWITSLPKMERQE----HRDLGPYAIIMAPTRELAQQIEEETNKF 401
Query: 250 ----GFHMAKFISHCARLDSSME-NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV 304
G I +R D M+ GV ++IATP +L +E+R +
Sbjct: 402 GKLLGIKTVSVIGGASREDQGMKLRMGVE-------------VVIATPGRLLDVLENRYL 448
Query: 305 SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF---------------- 348
+ YV+LDEAD + D GF P++ K+L + D+ +K + F
Sbjct: 449 LLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKY 508
Query: 349 -QTILVTAAIA---EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKK 404
QT++ TA ++ E L Q + +AGK T + ++ V+ + E D +K
Sbjct: 509 RQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQV----VYMVPE--DRKRK 562
Query: 405 KVVEAMDS 412
K+VE ++S
Sbjct: 563 KLVEVLES 570
>gi|444706640|gb|ELW47966.1| putative ATP-dependent RNA helicase DDX41 [Tupaia chinensis]
Length = 587
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 145 IKSFKEMKFPAAILRGLKKKGIHQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 204
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 205 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 247
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 248 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 307
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 308 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 343
>gi|348516780|ref|XP_003445915.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
[Oreochromis niloticus]
Length = 614
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 35/226 (15%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++K ++K G+ P+ IQ GIP VL+G+ ++ + +GSG+TL + LP+
Sbjct: 172 IKSFREMKFPPAILKGLKKKGIVHPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFTLPI 231
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++ +
Sbjct: 232 IMF--ALEQEKRLPF---------------FKREGPYGLIICPSRELARQTHGIIEY--Y 272
Query: 260 CA--------RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311
C +L +++ GG+S K +V + M++ATP ++ ++ + V D RY
Sbjct: 273 CKLLEEEGAPQLRTALCIGGMSVKEQMEVVKHGVHMMVATPGRLMDLLQKKMVGLDICRY 332
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+ LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 333 LALDEADRMIDMGFEEDIRTIFSYFK-------GQR-QTLLFSATM 370
>gi|226468478|emb|CAX69916.1| hypotherical protein [Schistosoma japonicum]
Length = 259
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 126/273 (46%), Gaps = 57/273 (20%)
Query: 120 QQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
++L N + + K SG FQ +GL + + K G +P+ IQ IP +L+G+
Sbjct: 16 RKLVNSMNRKNKKSGG-------FQAMGLSSATFNGIIKKGYKLPTPIQRKTIPIILSGR 68
Query: 180 SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239
VV + +GSG+T A+L+PL + + HL P PRA++
Sbjct: 69 DVVAMARTGSGKTAAFLIPLFEKFP-----CHL-------------------PTGPRALI 104
Query: 240 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED----VSNAPIGMLIATPSEV 295
+ T E A Q + K + L +++ GG +ED + ++P ++IATP
Sbjct: 105 VSPTRELALQTLNFTKELGRYTPLKATVILGG---DKMEDQFAALHSSP-DIIIATPGRF 160
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
L + + N+S I YVV DE D LF+ GF ++S+ L L S QT++ +A
Sbjct: 161 LHILMEMNLSLKTIEYVVFDEGDRLFELGFAEQLSETLKRLPRSR--------QTLIFSA 212
Query: 356 AIAEMLGEQLSSLMECLERDNAGKVTAMLLEMD 388
+ + L +E AG V +LL +D
Sbjct: 213 TLPKNL----------VEFARAGLVDPILLRLD 235
>gi|90577843|ref|ZP_01233654.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
gi|90440929|gb|EAS66109.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
Length = 446
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 23/191 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++K + + +EIQ IP + GK ++ SS +GSG+TLA+LLP +Q
Sbjct: 3 FKDLGLDPRLLKKINHLAFDRATEIQQTAIPVAIAGKDILASSKTGSGKTLAFLLPAMQ- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+M R P PR ++L T E A Q F + ++
Sbjct: 62 ----------------RMYRSK----PFTRRDPRVLILTPTRELAKQVFAQLRTLNAGTP 101
Query: 263 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
D ++ GG + + ++ + N P+ ++ATP + H+E R+ D + ++LDEAD +
Sbjct: 102 YDGTLIVGGENFNDQVKALRNDPM-FVVATPGRLADHLEHRSTRLDGLEMLILDEADRML 160
Query: 322 DRGFGPEISKI 332
D GF ++ +I
Sbjct: 161 DLGFEAQLRRI 171
>gi|307215190|gb|EFN89962.1| Probable ATP-dependent RNA helicase DDX17 [Harpegnathos saltator]
Length = 540
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 22/199 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP- 198
V +F E G ++K + K G P+ IQ G P L+G+ +V + +GSG+TL+Y+LP
Sbjct: 81 VFNFGEAGFPEYVLKEITKQGFNEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPA 140
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+V + SQ ++ R+D P A+VL T E A Q +A
Sbjct: 141 IVHINSQ------------PKLSRKD---------GPIALVLAPTRELAQQIQQVADDFG 179
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H + + ++ GG A ++ + ++IATP +L +E + Y+VLDEAD
Sbjct: 180 HSSGIRNTCLYGGAPKGAQARDLDSGVEIVIATPGRLLDFLESGKTNLKRCTYLVLDEAD 239
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF P+I KI+ ++
Sbjct: 240 RMLDMGFEPQIRKIIEQIR 258
>gi|406911902|gb|EKD51608.1| hypothetical protein ACD_62C00220G0002 [uncultured bacterium]
Length = 421
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 27/216 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL E+++AV+ G VP+ IQ IP +LN + ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFENLGLSPELLQAVQGQGYSVPTPIQTKAIPLILNKQDILGSAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
ML + H RA++L T E A Q +
Sbjct: 62 RL----------------MLEKKNG---GGKRHIRALILTPTRELAAQVCKSVETYGKHL 102
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV+ +A + +++ATP +L HI R + + ++LDEAD +
Sbjct: 103 PLRSTVVFGGVNMEAQVRRLQYGVDIVVATPGRLLDHIGQRTIDLSRVDVLILDEADRML 162
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P++ +I+ L +G Q +L +A +
Sbjct: 163 DMGFIPDVKRIIALLP--------KGRQNLLFSATL 190
>gi|126729580|ref|ZP_01745393.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
gi|126709699|gb|EBA08752.1| ATP-dependent RNA helicase RhlE [Sagittula stellata E-37]
Length = 469
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLDLSPKVLKAIEEAGYTTPTPIQAGAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L R A M PR++VLC T E A Q S
Sbjct: 61 IH------------------KLARGRARARM----PRSLVLCPTRELAAQVAENFDTYSK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + I +V+DEAD
Sbjct: 99 HVKLTKALLIGGVSFKEQDVLIDKGVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 159 MLDMGFIPDIERIFS 173
>gi|86134655|ref|ZP_01053237.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
gi|85821518|gb|EAQ42665.1| DEAD/DEAH box helicase [Polaribacter sp. MED152]
Length = 438
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL +KAVE+ G PS IQ IP +L GK V+ S+ +G+G+T + LP++Q
Sbjct: 2 SFKSLGLSDAFVKAVEEKGYTKPSPIQEKAIPHILEGKDVLASAQTGTGKTAGFTLPVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
L E H + +P+ RA+VL T E A Q + S
Sbjct: 62 Y---LSETKHPK----------------YRPI--RALVLTPTRELAAQVHDNVREYSKYV 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ S++ GGV + + + +L+ATP +L + + VS I +LDEAD +
Sbjct: 101 NIKSAVVFGGVKAASQIATLKRGVDILVATPGRLLDLHDQKAVSFKRIDVFILDEADRML 160
Query: 322 DRGFGPEISKIL 333
D GF +I+KI+
Sbjct: 161 DMGFVRDINKII 172
>gi|300704701|ref|YP_003746304.1| DEAD/DEAH box helicase [Ralstonia solanacearum CFBP2957]
gi|299072365|emb|CBJ43703.1| modular protein:DEAD/DEAH box helicase (N-terminal); ATP dependant
RNA helicase(C-terminal) (rhlE-like) [Ralstonia
solanacearum CFBP2957]
Length = 603
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 131/261 (50%), Gaps = 22/261 (8%)
Query: 115 PQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA 174
PQ + +++ S+ S NA S+F LGL +++A+ ++ P+ +Q IPA
Sbjct: 4 PQLDGGAIAHTESDTPNSDALNATAASAFAALGLDERIVRALGEVNYTTPTPVQAQAIPA 63
Query: 175 VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLR-RDEALLPMKP- 232
L+G+ ++++S +GSG+T A++LP +Q S+ E ++ G Q ++ R P KP
Sbjct: 64 CLSGRDLLVTSQTGSGKTAAFILPAIQRISEQPEPQRPRMDGAPQRVKGRRPRPAPAKPS 123
Query: 233 ---MHP-RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGML 288
+ P R + L T +A G H+ + + CA S+ G K L+ ++ P ++
Sbjct: 124 LLVLTPTRELALQVTTATAQYGRHLRRIV--CA----SILGGMPYPKQLDMLARMP-DII 176
Query: 289 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF 348
IATP +L HI+ + + +V DEAD + D GF +I I+ +S
Sbjct: 177 IATPGRLLDHIDSGRIDLSALDMLVFDEADRMLDMGFADDIEAIVGATPES--------- 227
Query: 349 QTILVTAAIAEMLGEQLSSLM 369
+ +L+ +A + EQL+ M
Sbjct: 228 RQMLMFSATMDRRIEQLAERM 248
>gi|262275389|ref|ZP_06053199.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
gi|262220634|gb|EEY71949.1| ATP-dependent RNA helicase RhlE [Grimontia hollisae CIP 101886]
Length = 436
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F ELGL A +++A+++ G PS IQ IPAVL GK V+ ++ +G+G+T ++LP+++
Sbjct: 2 GFTELGLSAPILRAIQEKGYDTPSPIQMQAIPAVLEGKDVMAAAQTGTGKTAGFVLPILE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S +P H RA++L T E A Q A S
Sbjct: 62 RLSNGGR---------------------TRPNHVRALILTPTRELAAQIHENAVVYSRHL 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L SS+ GGV +L+ATP +L + V + +VLDEAD +
Sbjct: 101 PLRSSVVFGGVKINPQMMALRKGTDILVATPGRLLDLYQQNAVKFSQLEVLVLDEADRML 160
Query: 322 DRGFGPEISKILNPL 336
D GF +I KIL+ L
Sbjct: 161 DMGFFRDIKKILDLL 175
>gi|194747377|ref|XP_001956128.1| GF25051 [Drosophila ananassae]
gi|190623410|gb|EDV38934.1| GF25051 [Drosophila ananassae]
Length = 826
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL E+IK + K G VP+ IQ IP +L G+ VV + +GSG+T +L+PL +
Sbjct: 40 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFE- 98
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RR+ P K RA++L T E A Q + K +
Sbjct: 99 ----------------KLQRRE----PTKGA--RALILSPTRELAVQTYKFIKELGRFME 136
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + + GG S + + +++ATP L + ++ + I YVV DEAD LF+
Sbjct: 137 LKTILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFE 196
Query: 323 RGFGPEISKILNPL 336
GFG ++++ L+ L
Sbjct: 197 MGFGEQLNETLHRL 210
>gi|15030112|gb|AAH11308.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
Length = 622
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
EO147]
gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
C6786]
Length = 509
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 119/235 (50%), Gaps = 13/235 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 41 TFASLGLSPEIVSALQAAGYAKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 100
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHC 260
++QL + Q Q RR P+ P +VL T E A Q A + H
Sbjct: 101 RFAQLQKTQAQQPREPQQGERRGRRPQPV--ARPGLLVLTPTRELAMQVTTAASTYGKHL 158
Query: 261 ARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 159 RRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEADR 217
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ + QT+L +A + +G L++ ER
Sbjct: 218 MLDMGFIDDIETIVAATPATR--------QTMLFSATLDGKIGSLTGRLLKDPER 264
>gi|91792542|ref|YP_562193.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91714544|gb|ABE54470.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 465
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 21/193 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL ++ A+ K L ++IQ + IPA L GK V+ + +GSG+TLA+ L +++
Sbjct: 31 SFSQLGLTKALVTALPK-ALVSATDIQRLAIPAGLKGKDVLALAQTGSGKTLAFGLVILE 89
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
L L + + +D+ P A+V+ T E A Q H ++
Sbjct: 90 ---------KLLLQAKEKSVAQDK---------PSALVIVPTRELAQQVHHELNTVAMKL 131
Query: 262 RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GG K ++ ++ P +LIATP +L ++++ VS DI+++VLDEAD L
Sbjct: 132 NLTSAIVCGGADLDKQIDALAQGP-QLLIATPGRLLALVQEKAVSLSDIKHLVLDEADRL 190
Query: 321 FDRGFGPEISKIL 333
+ GF P+I KI+
Sbjct: 191 LEMGFWPDIQKII 203
>gi|77359468|ref|YP_339043.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas haloplanktis
TAC125]
gi|76874379|emb|CAI85600.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
Length = 408
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ RRD P R +V+ T E A Q + ++
Sbjct: 63 --------------LLDFPRRD-------PGFARVLVMTPTRELAYQIHEQCELLAKRTN 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ +++ +LIATP +++++E N + + +++DEAD + D
Sbjct: 102 LKIGVVTGGINYGTHKEIFEKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLD 161
Query: 323 RGFGPEISKILNPLKD 338
GF E+S+I + K+
Sbjct: 162 MGFKKEMSRICDEAKN 177
>gi|86145735|ref|ZP_01064064.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
gi|218676917|ref|YP_002395736.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|85836434|gb|EAQ54563.1| ATP-dependent RNA helicase [Vibrio sp. MED222]
gi|218325185|emb|CAV27095.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 399
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 37/220 (16%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL + ++KAV K G P+ IQ IP VL+GK+++ ++ +G+G+T +++LP++++
Sbjct: 3 FSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQG----FHMAKFIS 258
S+ G TQ +R RA++L T E A Q AKF++
Sbjct: 63 LSK----------GETQRKKR-----------IRAVILTPTRELAIQVEQNITKYAKFLN 101
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L S GGVS + +D + +L+ATP ++ R V D++ +VLDEAD
Sbjct: 102 ----LTSLAMYGGVSYQHQKDRLIEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEAD 157
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
+ D GF +I+KI+ L Q Q +L +A ++
Sbjct: 158 RMLDMGFIEDINKIIARLP--------QNIQNLLFSATLS 189
>gi|407068786|ref|ZP_11099624.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 398
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 37/220 (16%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL + ++KAV K G P+ IQ IP VL+GK+++ ++ +G+G+T +++LP++++
Sbjct: 3 FSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQG----FHMAKFIS 258
S+ G TQ +R RA++L T E A Q AKF++
Sbjct: 63 LSK----------GETQRKKR-----------IRAVILTPTRELAIQVEQNITKYAKFLN 101
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L S GGVS + +D + +L+ATP ++ R V D++ +VLDEAD
Sbjct: 102 ----LTSLAMYGGVSYQHQKDRLIEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEAD 157
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
+ D GF +I+KI+ L Q Q +L +A ++
Sbjct: 158 RMLDMGFIEDINKIIARLP--------QNIQNLLFSATLS 189
>gi|37525462|ref|NP_928806.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784890|emb|CAE13804.1| ATP-dependent RNA helicase RhlE [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 434
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 98/196 (50%), Gaps = 21/196 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+ LGL A++++AVE+ G P+ IQ IP VL GK ++ S+ +G+G+T + LP++Q
Sbjct: 8 NFKSLGLSADILRAVEEQGYSAPTPIQQQAIPVVLAGKDLLASAQTGTGKTAGFTLPMLQ 67
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
R +++ + MK P RA++L T E A Q + S
Sbjct: 68 --------------------RLNDSPIQMKGRRPVRALILTPTRELAAQVGENVRDYSKY 107
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
RL S + GGVS + +L+ATP +L V + +VLDEAD +
Sbjct: 108 LRLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSRVEILVLDEADRM 167
Query: 321 FDRGFGPEISKILNPL 336
D GF +I ++LN L
Sbjct: 168 LDMGFIHDIRRVLNKL 183
>gi|377819861|ref|YP_004976232.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357934696|gb|AET88255.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 528
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 14/195 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFDSLGLSEPLLRAVNELGYSTPTPIQLQAIPAVLKGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
SQL G +P+ RA++L T E A Q +
Sbjct: 62 RLSQLGPVSAPAASGAK------------RPV--RALILTPTRELAAQVEESVRAYGKYL 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGV D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 108 KLKSTVMFGGVGINPQIDALRRGVDIVVATPGRLLDHMQQKTIDVSQLEILVLDEADRML 167
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 168 DMGFIHDIKRVLAKL 182
>gi|359434625|ref|ZP_09224888.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20652]
gi|357918834|dbj|GAA61137.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20652]
Length = 454
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDNKLLDAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ RRD P R +V+ T E A Q + ++
Sbjct: 63 --------------LLDFPRRD-------PGFARVLVMTPTRELAYQIHEQCELLAKRTH 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ +++ +LIATP +++++E N + + +++DEAD + D
Sbjct: 102 LKIGVVTGGINYGTHKEIFEKNNDILIATPGRLMEYLETENFHAEHVEMLIIDEADRMLD 161
Query: 323 RGFGPEISKILNPLKD 338
GF E+S+I + K+
Sbjct: 162 MGFKKEMSRICDEAKN 177
>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
Length = 457
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 21/197 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F ELGL AE+ +AV+++G P+ IQ IP VL G+ V+ ++ +G+G+T A+ LP++
Sbjct: 3 TFAELGLPAEVQRAVDELGYAEPTPIQARAIPEVLTGRDVLAAAQTGTGKTAAFTLPII- 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKP-MHP-RAIVLCTTEESADQGFHMAKFISH 259
++L R A + P MHP R ++L T E ADQ + +
Sbjct: 62 --ARL----------------RHYATHSVSPAMHPVRCLILTPTRELADQIAASVQSYTK 103
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L + GGV+ + + +++ATP +L H+E + + + + +VLDEAD
Sbjct: 104 YLPLRHTCVFGGVNMDPQKADLMRGMDIVVATPGRLLDHLEQKTIQLNRVEMLVLDEADR 163
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF +I +IL L
Sbjct: 164 MLDMGFILDIRRILAQL 180
>gi|71999644|ref|NP_741348.2| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
gi|351051383|emb|CCD74205.1| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
Length = 825
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 34/220 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
+Q++GL + KA+EK G P+ IQ IP +++GK VV S +GSG+T A+++P++Q
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQ- 84
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RRD + RA+++ T E A Q F + K +
Sbjct: 85 ----------------KLKRRDTTGI-------RALMVSPTRELALQTFKVVKELGRFTG 121
Query: 263 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L + GG + + P +L+ATP +L I + ++ ++YVV DEAD LF
Sbjct: 122 LRCACLVGGDQIEEQFSTIHENP-DILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLF 180
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+ GF ++++ L + +S QT+L +A + +ML
Sbjct: 181 EMGFQDQLTETLKRIPESR--------QTLLFSATLPKML 212
>gi|262274927|ref|ZP_06052738.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
gi|262221490|gb|EEY72804.1| ATP-dependent RNA helicase SrmB [Grimontia hollisae CIP 101886]
Length = 413
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 30/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F EL L ++++A++ MG P+ IQ IP ++G+ ++ S+ +G+G+T A++LPL
Sbjct: 1 MRTFAELELDPQLLQALDDMGFERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLPL 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q L+ + KP RA++L T E A Q A+ ++
Sbjct: 61 LQ-----------HLIDFPRQ----------KPGPARALILTPTRELAIQIADQARALAK 99
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L GG+S + ++ +++ATP +++++E C I +VLDEAD
Sbjct: 100 YTGLKIITITGGISYQEHAEILGKTQDIVVATPGRLMEYVEAERFDCRAIESLVLDEADR 159
Query: 320 LFDRGFGPEISKILNPLK--------DSALKSNG-QGFQTILVT 354
+ D GFGP + ++ + + + L+ G +GF+ L+T
Sbjct: 160 MLDMGFGPAVDRLSSECRWRKQSMLFSATLEGRGIEGFKKTLLT 203
>gi|413963566|ref|ZP_11402793.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413929398|gb|EKS68686.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 502
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 18/192 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFDSLGLSEPLLRAVNELGYSSPTPIQLQAIPAVLKGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
SQL +T +R P+ RA++L T E A Q +
Sbjct: 62 RLSQL--------APVTGGAKR--------PV--RALILTPTRELAAQVEESVRAYGKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGV D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLKSTVMFGGVGINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSQLEILVLDEADRML 163
Query: 322 DRGFGPEISKIL 333
D GF +I ++L
Sbjct: 164 DMGFIHDIKRVL 175
>gi|71999646|ref|NP_741347.2| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
gi|351051384|emb|CCD74206.1| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
Length = 871
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 42/249 (16%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
+Q++GL + KA+EK G P+ IQ IP +++GK VV S +GSG+T A+++P++Q
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQ- 84
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RRD + RA+++ T E A Q F + K +
Sbjct: 85 ----------------KLKRRDTTGI-------RALMVSPTRELALQTFKVVKELGRFTG 121
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG + + +L+ATP +L I + ++ ++YVV DEAD LF+
Sbjct: 122 LRCACLVGGDQIEEQFSTIHENPDILLATPGRLLHVIVEMDLRLSYVQYVVFDEADRLFE 181
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTA 382
GF ++++ L + +S QT+L +A + +ML ++ AG
Sbjct: 182 MGFQDQLTETLKRIPESR--------QTLLFSATLPKML----------VDFAKAGLTDP 223
Query: 383 MLLEMDQAE 391
ML+ +D E
Sbjct: 224 MLVRLDVDE 232
>gi|441504046|ref|ZP_20986043.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441428219|gb|ELR65684.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 446
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 30/216 (13%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL +IK + + P+EIQ IP + GK ++ SS +GSG+TLA+LLP +Q
Sbjct: 3 FKDLGLDQRLIKKLNHLAFDKPTEIQQTAIPVAILGKDLLASSKTGSGKTLAFLLPAMQ- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++ RRD PR ++L T E A Q F + +
Sbjct: 62 ----------RMYRCKPFTRRD----------PRVLILTPTRELAKQVFAQLRTLIAGTP 101
Query: 263 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
D ++ GG + + ++ P+ ++ATP + H+E R+ D + ++LDEAD +
Sbjct: 102 YDGALVVGGENFNDQVKAFRKDPM-FVVATPGRLADHLEHRSTHLDGLEMLILDEADRML 160
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF ++ +I +N + QT++ +A +
Sbjct: 161 DLGFEAQLRRIHEA-------ANHRRRQTLMFSATL 189
>gi|294637622|ref|ZP_06715901.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
gi|451965942|ref|ZP_21919197.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda NBRC 105688]
gi|291089177|gb|EFE21738.1| putative ATP-dependent RNA helicase [Edwardsiella tarda ATCC 23685]
gi|451315191|dbj|GAC64559.1| ATP-dependent RNA helicase SrmB [Edwardsiella tarda NBRC 105688]
Length = 448
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F EL L ++ A+ G P+ IQ IP ++G+ V+ S+ +G+G+T A+LLP +
Sbjct: 4 TNFSELELDERLLDALRDKGYERPTAIQIAAIPPAMDGRDVLGSAPTGTGKTAAFLLPAL 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISH 259
Q H L P K P R ++L T E A Q A+ ++
Sbjct: 64 Q--------HLLDF--------------PRKKSGPPRILILTPTRELAMQVADQARELAR 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGVS ++ + M++ATP +LQ+I++ N C + ++LDEAD
Sbjct: 102 HTTLDITTITGGVSYINHAEIFSTNQDMVVATPGRLLQYIKEENFDCRSVETLILDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ D GF +I +
Sbjct: 162 MLDMGFAKDIETV 174
>gi|242015175|ref|XP_002428249.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
gi|212512810|gb|EEB15511.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
Length = 723
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 124/271 (45%), Gaps = 47/271 (17%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E++++ N AS ++K+ G FQ G ++K ++K G +P+ IQ IP +L
Sbjct: 12 EKEEVGN-ASTKKKNGGG-------FQAFGFSFPVLKGIQKRGYKIPTPIQRKSIPLILQ 63
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237
G+ VV + +GSG+T +LLP+ + +L+ T P + RA
Sbjct: 64 GRDVVAMARTGSGKTACFLLPMFE-----------KLINKT----------PKSRLGVRA 102
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297
++L T E A Q K + +L + GG S + +++ATP L
Sbjct: 103 LILSPTRELALQTVKFIKELGKFTKLKALAILGGDSMDQQFGAIHENPDIIVATPGRFLH 162
Query: 298 HIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+ + + YVV DEAD LF+ GFG ++ +IL+ L G QT+L +A +
Sbjct: 163 ICVEMELKLTSVEYVVFDEADRLFEMGFGEQLKEILDRL--------GVSRQTVLFSATL 214
Query: 358 AEMLGEQLSSLMECLERDNAGKVTAMLLEMD 388
++L ++ AG V +LL +D
Sbjct: 215 PKLL----------VDFAKAGLVNPVLLRLD 235
>gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 512
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E++ A+E G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 37 SFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPM-HPRAIVLCTTEESADQGFHMAK-FISH 259
++QL + Q + + D + +P+ P +VL T E A Q A + H
Sbjct: 97 RFAQLQKTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 215
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ S QT+L +A + +G L++ ER
Sbjct: 216 RMLDMGFIDDIETIVAATPASR--------QTMLFSATLDGKIGSLTGRLLKDPER 263
>gi|348575047|ref|XP_003473301.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Cavia
porcellus]
Length = 622
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 378
>gi|84385236|ref|ZP_00988268.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
gi|84379833|gb|EAP96684.1| ATP-dependent RNA helicase [Vibrio splendidus 12B01]
Length = 399
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 37/220 (16%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL + ++KAV K G P+ IQ IP VL+GK+++ ++ +G+G+T +++LP++++
Sbjct: 3 FSKLGLSSPIVKAVAKQGYEKPTSIQEKAIPIVLSGKNLIAAAQTGTGKTASFVLPILEM 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQG----FHMAKFIS 258
S+ G TQ +R RA++L T E A Q AKF++
Sbjct: 63 LSK----------GETQRKKR-----------IRAVILTPTRELAIQVEQNITKYAKFLN 101
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L S GGVS + +D + +L+ATP ++ R V D++ +VLDEAD
Sbjct: 102 ----LTSLAMYGGVSYQHQKDRLIEGVDILVATPGRLIDMYGQRAVHFDEVEVLVLDEAD 157
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
+ D GF +I+KI+ L Q Q +L +A ++
Sbjct: 158 RMLDMGFIEDINKIIARLP--------QNIQNLLFSATLS 189
>gi|270047502|ref|NP_598820.2| probable ATP-dependent RNA helicase DDX41 [Mus musculus]
gi|341940433|sp|Q91VN6.2|DDX41_MOUSE RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
Full=DEAD box protein 41
gi|74142777|dbj|BAE33914.1| unnamed protein product [Mus musculus]
Length = 622
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|344240368|gb|EGV96471.1| putative ATP-dependent RNA helicase DDX41 [Cricetulus griseus]
Length = 622
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|78184025|ref|YP_376460.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
gi|78168319|gb|ABB25416.1| DEAD/DEAH box helicase-like [Synechococcus sp. CC9902]
Length = 458
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++L L AE ++++++ G P+ IQ + IP VL GK ++ S+ +G+G+T A++LP+++
Sbjct: 25 TFEQLELCAETVRSIKESGYLSPTPIQALTIPEVLQGKDIMASAQTGTGKTAAFILPIIE 84
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ D+ Q+ ++VL T E A Q AK +
Sbjct: 85 LLRAEDKPKRYQV---------------------HSLVLTPTRELAAQVEASAKAYTKYL 123
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S GGVS + + +L+ATP +L I + + D+++ +VLDEAD +
Sbjct: 124 ALRSDAVFGGVSIRPQVKRLQGGVDILVATPGRLLDLINQKMIRFDNLKVLVLDEADRML 183
Query: 322 DRGFGPEISKILNPL 336
D GF +I K++ L
Sbjct: 184 DMGFIRDIKKVIEYL 198
>gi|88801632|ref|ZP_01117160.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
gi|88782290|gb|EAR13467.1| putative ATP-dependent RNA helicase [Polaribacter irgensii 23-P]
Length = 432
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++LGL ++KAVE+ G PS IQ IP +L GK ++ S+ +G+G+T + LP++Q
Sbjct: 2 TFKDLGLSPALVKAVEEKGYTKPSPIQEKAIPHILEGKDILASAQTGTGKTAGFTLPVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
L E H + +P+ RA+VL T E A Q + S
Sbjct: 62 Y---LVETKHPK----------------YRPL--RALVLTPTRELAAQVHDNVREYSKYV 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ S++ GGV++K + + +L+ATP +L + + +S + ++LDEAD +
Sbjct: 101 DIKSTVVFGGVNAKPQIATLRSGVDILVATPGRLLDLHDQKALSFKRVEVLILDEADRML 160
Query: 322 DRGFGPEISKILN 334
D GF +I+KI++
Sbjct: 161 DMGFVRDINKIIS 173
>gi|238753347|ref|ZP_04614710.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
gi|238708300|gb|EEQ00655.1| ATP-dependent RNA helicase rhlE [Yersinia ruckeri ATCC 29473]
Length = 453
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 96/196 (48%), Gaps = 21/196 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A++++A+E+ G VP+ IQ IP VL G+ ++ S+ +G+G+T + LPL+Q
Sbjct: 2 SFDSLGLNADILRAIEEQGYLVPTPIQRQAIPVVLQGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHC 260
+ +E P+K P RA++L T E A Q + S
Sbjct: 62 IL--------------------NENAQPIKGRRPVRALILTPTRELAAQIGENVEQYSKY 101
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+L S + GGVS + +L+ATP +L V I +VLDEAD +
Sbjct: 102 LKLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRM 161
Query: 321 FDRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 162 LDMGFIHDIRRVLAKL 177
>gi|90410084|ref|ZP_01218101.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
gi|90329437|gb|EAS45694.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
Length = 420
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 23/196 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL ++KAV ++G P+ IQ IP +L GK+++ ++ +G+G+T +++LPL++
Sbjct: 2 SFSNLGLSDPILKAVAELGYETPTPIQEKAIPVILTGKNLIAAAQTGTGKTASFVLPLLE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHC 260
+S + P++ RA++L T E A Q ++ ++ H
Sbjct: 62 KFSDMP---------------------PIRAKRIRALILVPTRELAVQVDANITQYSKHL 100
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ L S GGV K + + +L+ATP +L R + D++ +VLDEAD +
Sbjct: 101 S-LTSLAMYGGVDYKDQKQRLIDGVDILVATPGRLLDMYTQRALHFDELEVLVLDEADRM 159
Query: 321 FDRGFGPEISKILNPL 336
D GF +I+KIL L
Sbjct: 160 LDMGFIEDINKILERL 175
>gi|299471815|emb|CBN79482.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 660
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 38/286 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L M+ A+E G+ P+ IQ G+P L+G+ ++ + +GSG+T+ + +PL
Sbjct: 216 IKSFREMKLPDPMLAALEAKGIKRPTPIQVQGVPVALSGRDMIGIAFTGSGKTVTFSIPL 275
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FIS 258
+ + L+EE L +VG P ++LC + E A Q F + F
Sbjct: 276 IML--ALEEEMKLPVVGGEG---------------PFGVILCPSRELARQTFDVVDYFCK 318
Query: 259 HCAR-----LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
H R L + + GG ++ ++ + + ++ATP + + V D +Y+
Sbjct: 319 HLHRGGFPELRTVLCIGGEDKRSQIDPIQRQGVHCIVATPGRISDLLHTHKVHFDLCKYI 378
Query: 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372
LDE D + D GF E+ KI+N K Q QT+L +A + + + ++
Sbjct: 379 CLDEGDRMLDMGFDEEVQKIMNHFK--------QQRQTLLFSATMPQKFQDFAKDVLVKP 430
Query: 373 ERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q + E+ K+V ++ L +AP
Sbjct: 431 VLVNVGRAGAANLDVIQEVEYVKQEA------KIVYLLECLQKTAP 470
>gi|407926601|gb|EKG19568.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 913
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 28/216 (12%)
Query: 125 IASEREKSSGSNAEVV---SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSV 181
+A+ KSS V FQ +GL A ++KA+ + G VP+ IQ IP VL+G+ V
Sbjct: 70 LAAANRKSSNLKGRTVKKGGGFQAMGLNANVLKAITRKGFSVPTPIQRKTIPLVLDGQDV 129
Query: 182 VLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241
V + +GSG+T A+++P+++ + H VG RAI++
Sbjct: 130 VGMARTGSGKTAAFVIPMIERL-----KAHSAKVG------------------ARAIIMS 166
Query: 242 TTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIE 300
+ E A Q + K + L + + GG S D+++ P ++IATP L
Sbjct: 167 PSRELALQTLKVVKELGRGTDLRTVLLVGGDSLEDQFADMNSNP-DIIIATPGRFLHLKV 225
Query: 301 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
+ + +RYVV DEAD LF+ GF ++++IL+ L
Sbjct: 226 EMELDLSTVRYVVFDEADRLFEMGFAAQLTEILHAL 261
>gi|89072528|ref|ZP_01159100.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
gi|89051632|gb|EAR57085.1| putative ATP-dependent RNA helicase SrmB [Photobacterium sp. SKA34]
Length = 412
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F EL L +E+++A+E++G P+ +Q IP L+GK V+ S+ +G+G+T A+LLP+
Sbjct: 1 MKDFSELELDSELLRAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFIS 258
+Q HLQ P K P R ++L T E A Q A+ ++
Sbjct: 61 IQ---------HLQ-------------DFPRKRPGPARILILTPTRELAIQVADQARALA 98
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L GG+S ++ +++ATP ++++IE C + ++LDEAD
Sbjct: 99 KYTTLKVFTITGGISYDEHAEMLGKTQDIVVATPGRLMEYIEAEKFDCRAVECLILDEAD 158
Query: 319 TLFDRGFGPEISKI 332
+ D GFG + ++
Sbjct: 159 RMLDMGFGKIVERL 172
>gi|390940712|ref|YP_006404449.1| DNA/RNA helicase [Sulfurospirillum barnesii SES-3]
gi|390193819|gb|AFL68874.1| DNA/RNA helicase, superfamily II [Sulfurospirillum barnesii SES-3]
Length = 430
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL + +AV+++G P+ +Q IP VL GK V+ ++ +G+G+T AY LPL+ +
Sbjct: 3 FEKLGLMEPVREAVKELGYTTPTPVQSKVIPLVLEGKDVMATAQTGTGKTAAYALPLLHI 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
S+ ++ V RA++L T E A Q +
Sbjct: 63 LSKKTQKSTTSKV-------------------VRALILVPTRELASQVGASVQVYGKNVA 103
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S+ GGV + I +LIATP +L+H++ NV + VV DEAD + D
Sbjct: 104 LSSAAIYGGVKFTPQAKKLDKGIDILIATPGRLLEHVKLGNVDLSRVEIVVFDEADRILD 163
Query: 323 RGFGPEISKILN 334
GF E+ +LN
Sbjct: 164 MGFWDEVQTLLN 175
>gi|339444851|ref|YP_004710855.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
gi|338904603|dbj|BAK44454.1| hypothetical protein EGYY_12990 [Eggerthella sp. YY7918]
Length = 418
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 28/229 (12%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
++F++LGL + V ++G P+ +Q IP VL G+ VV ++ +G+G+T A+ LPL+
Sbjct: 3 TTFEDLGLSEATLSTVARLGFTEPTPVQQQAIPLVLAGRDVVAAAKTGTGKTAAFALPLI 62
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+ +L G DEA +P PR +V+ T E A Q ++
Sbjct: 63 E-----------RLAG-------DEA--KRRPGSPRVLVVTPTRELAQQIDAACSDMTRG 102
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+R+ GG+ K N I +LIATP + ++ +V D + +VLDEAD +
Sbjct: 103 SRVRVLSVVGGMPYKGQIARLNKGIDILIATPGRLFDLMQRGDVKLDRVETLVLDEADRM 162
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369
D GF P + KI+ S QT+L +A I + + +S+++
Sbjct: 163 LDMGFWPTMKKIVAATPASR--------QTLLFSATIERKVMDSVSTIL 203
>gi|226502378|ref|NP_001147853.1| ATP-dependent RNA helicase DDX41 [Zea mays]
gi|195614138|gb|ACG28899.1| ATP-dependent RNA helicase DDX41 [Zea mays]
Length = 616
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 115/227 (50%), Gaps = 33/227 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F++L L M++ + + G+ P+ IQ G+P VL+G+ ++ + +GSG+TL ++LPL+
Sbjct: 172 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 231
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFH-MAKFI-- 257
V Q +E+L+P+ P P +++C + E A Q + + +F+
Sbjct: 232 VALQ------------------EESLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIP 273
Query: 258 ---SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ + + GGV + DV + +++ATP + + + ++ D+ RY+ L
Sbjct: 274 LKEAGYPEIRHLLCIGGVDMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTL 333
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
DEAD L D GF +I ++ + KD QT+L +A + + +
Sbjct: 334 DEADRLVDLGFEDDIKEVFDHFKDQR--------QTLLFSATMPQKI 372
>gi|195030246|ref|XP_001987979.1| GH10918 [Drosophila grimshawi]
gi|193903979|gb|EDW02846.1| GH10918 [Drosophila grimshawi]
Length = 1791
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 105/204 (51%), Gaps = 21/204 (10%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K +G N + + SF+ L++ ++ V K G VP+ IQ V +P + G+ ++ + +GS
Sbjct: 171 KVTGDNVPKPIRSFEGAQLRSIVLNNVIKSGYKVPTPIQKVSMPVISEGRDLMACAQTGS 230
Query: 190 GRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
G+T A+LLP++ LDE ++++ P+A+++ T E A Q
Sbjct: 231 GKTAAFLLPMI--CKLLDEVDNVEI------------------GKPQAVIVSPTRELAIQ 270
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
FH A+ + + L S+ GG S K + +LIATP +L ++ ++ +
Sbjct: 271 IFHEARKFAFTSYLKISIVYGGTSVKYQNECITKGCHLLIATPGRLLDFVDRTFITFEAT 330
Query: 310 RYVVLDEADTLFDRGFGPEISKIL 333
R+VVLDEAD + D GF + KI+
Sbjct: 331 RFVVLDEADRMLDMGFADSMRKIM 354
>gi|7446043|pir||T15942 hypothetical protein F01F1.7 - Caenorhabditis elegans
Length = 701
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 138/307 (44%), Gaps = 70/307 (22%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +++E G E+ +AV+++G P+ IQ IP L + V+ + +GSG+T A+LLPL
Sbjct: 300 LRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPL 359
Query: 200 VQVYSQLDEEHHLQLVGITQM--LRRDEALLPMKPMHPRAIVLCTTEESADQ-------- 249
LV IT + + R E + + P AI++ T E A Q
Sbjct: 360 --------------LVWITSLPKMERQEH----RDLGPYAIIMAPTRELAQQIEEETNKF 401
Query: 250 ----GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305
G I +R D M+ + ++IATP +L +E+R +
Sbjct: 402 GKLLGIKTVSVIGGASREDQGMK------------LRMGVEVVIATPGRLLDVLENRYLL 449
Query: 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGF----------------- 348
+ YV+LDEAD + D GF P++ K+L + D+ +K + F
Sbjct: 450 LNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTNMKKDTDEFDNEEALMKGFSTREKYR 509
Query: 349 QTILVTAAIA---EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKK 405
QT++ TA ++ E L Q + +AGK T + ++ V+ + E D +KK
Sbjct: 510 QTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQV----VYMVPE--DRKRKK 563
Query: 406 VVEAMDS 412
+VE ++S
Sbjct: 564 LVEVLES 570
>gi|380015035|ref|XP_003691517.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Apis florea]
Length = 710
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 34/228 (14%)
Query: 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194
SN E ++F ++ L ++KA+ M P+ IQ IP L G+ + + +G+G+T A
Sbjct: 150 SNIESHATFHQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAA 209
Query: 195 YLLPLVQ--VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 252
Y+LP ++ +Y LD P R +VL T E Q +
Sbjct: 210 YMLPTLERLLYRPLD-----------------------GPAISRVLVLVPTRELGVQVYQ 246
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRY 311
+ K +S ++ + GG+ KA E V ++IATP ++ H+++ S D I
Sbjct: 247 VTKQLSQFTTIEVGLSVGGLDVKAQEAVLRRSPDIVIATPGRLIDHLKNTPTFSLDSIEV 306
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
++LDEAD + D F ++ I +K + QTIL +A + E
Sbjct: 307 LILDEADRMLDEYFAEQMKYI--------VKQCSRSRQTILFSATMTE 346
>gi|377820473|ref|YP_004976844.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935308|gb|AET88867.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
YI23]
Length = 546
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 146/300 (48%), Gaps = 45/300 (15%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE++ A+ G P+ +Q IPA L G+ +++SS +GSG+T A++LP ++
Sbjct: 38 SFESLGLSAEIVSALTAAGYQNPTPVQERAIPAALAGRDLLVSSPTGSGKTAAFMLPAIE 97
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKP---MHPRAIVLCTTEESADQGFHMA-KFI 257
++Q+ ++ Q + R A +P P+ +VL T E A Q A +
Sbjct: 98 KFAQMQKQEAQQ----PRAPRDPNAKSGRRPQPIARPKLLVLTPTRELAMQVSTAATTYG 153
Query: 258 SHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H RL + GGV+ + L ++ P +L+ATP ++ H+E + ++ +VLDE
Sbjct: 154 KHLRRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLIDHLERGRIDLSELNMLVLDE 212
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA----IAEMLGEQLSS----- 367
AD + D GF +I I++ S QT+L +A I + G L
Sbjct: 213 ADRMLDMGFIEDIETIVDATPASR--------QTLLFSATIDSKITSLTGRLLKDPERIE 264
Query: 368 LMECLE--------------RDNAGKVTAMLL---EMDQAEVFDLTESQ-DALKKKVVEA 409
+++ LE RD+ ++ LL E+DQA VF T+S D + ++ +A
Sbjct: 265 IVQRLEAKSNIAQTVHYVDDRDHKDRLLDHLLRADELDQAIVFTATKSDADLIANRLADA 324
>gi|86137575|ref|ZP_01056152.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
gi|85825910|gb|EAQ46108.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. MED193]
Length = 527
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 24/196 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L A+++KA+ + G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFTDLNLNAKVLKAIAEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFIS 258
+ +L R A M PR++VLC T E A Q + +
Sbjct: 61 IT------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTK 98
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H +L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HL-KLTKALLIGGVSFKEQDQLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEAD 157
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 158 RMLDMGFIPDIERIFS 173
>gi|53718338|ref|YP_107324.1| ATP-dependent RNA helicase 1 [Burkholderia pseudomallei K96243]
gi|53724700|ref|YP_102079.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67641488|ref|ZP_00440266.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
gi|126450332|ref|YP_001081986.1| ATP-dependent RNA helicase rhlE [Burkholderia mallei NCTC 10247]
gi|134279667|ref|ZP_01766379.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
305]
gi|226196769|ref|ZP_03792349.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
Pakistan 9]
gi|386862863|ref|YP_006275812.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
gi|418392348|ref|ZP_12968130.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|418537531|ref|ZP_13103166.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|418541949|ref|ZP_13107410.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|418548277|ref|ZP_13113396.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|418554393|ref|ZP_13119180.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|52208752|emb|CAH34688.1| putative ATP-dependent RNA helicase 1 [Burkholderia pseudomallei
K96243]
gi|52428123|gb|AAU48716.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|126243202|gb|ABO06295.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10247]
gi|134248867|gb|EBA48949.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
305]
gi|225931300|gb|EEH27307.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
Pakistan 9]
gi|238522432|gb|EEP85876.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei GB8 horse 4]
gi|385349447|gb|EIF56014.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|385356616|gb|EIF62709.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|385358294|gb|EIF64306.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|385370257|gb|EIF75512.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|385375424|gb|EIF80195.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|385659991|gb|AFI67414.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
Length = 485
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|445495878|ref|ZP_21462922.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444792039|gb|ELX13586.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 463
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 14/195 (7%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV + G P+ IQ IPAVLNG ++ + +G+G+T + LP++
Sbjct: 2 SFSSLGLSDAIVRAVTETGYTTPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL- 60
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H L + + P+ RA++L T E A Q +
Sbjct: 61 --------HRLSTDANGAAITSNTTARPI-----RALILTPTRELAAQVEESVRTYGKYT 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L+S++ GGV + +L+ATP +L H+E R V+ + ++LDEAD +
Sbjct: 108 KLNSTVIFGGVGINPQIKQLKHGVDILVATPGRLLDHMEQRTVNLSKVEILILDEADRML 167
Query: 322 DRGFGPEISKILNPL 336
D GF +I K+L L
Sbjct: 168 DMGFIRDIKKVLAAL 182
>gi|344342837|ref|ZP_08773707.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
gi|343805389|gb|EGV23285.1| DEAD/DEAH box helicase domain protein [Marichromatium purpuratum
984]
Length = 442
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 20/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+A++++AV G P+ IQ IPAVL G ++ + +G+G+T A+ LP++Q
Sbjct: 2 SFDSLGLRADLLRAVAGQGYARPTPIQEQAIPAVLAGHDLLAGAQTGTGKTAAFALPVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ + +L PRA+VL T E A Q +
Sbjct: 62 LLAARKSNGGRRL--------------------PRALVLSPTRELAAQIGERFQAYGREV 101
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV + D + +L+ATP +L H R + + +VLDEAD +
Sbjct: 102 SLRSTVIFGGVGMQPQVDRLRRGVDILVATPGRLLDHAARRTLDLSAVEILVLDEADRML 161
Query: 322 DRGFGPEISKIL 333
D GF +I K+L
Sbjct: 162 DMGFIHDIRKVL 173
>gi|288959250|ref|YP_003449591.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
gi|288911558|dbj|BAI73047.1| ATP-dependent RNA helicase [Azospirillum sp. B510]
Length = 456
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 35/236 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL ++KA+E P+ +Q IP L G+ ++ ++ +G+G+T A++LP +
Sbjct: 2 SFSELGLHPLVLKALEAFEYTTPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPALT 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
++L L G PR +VL T E A Q A+ +
Sbjct: 62 RTAEL------PLNGAAT---------------PRVLVLAPTRELAKQVTDAARKYAKFM 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L+ GG+ + + + P+ +L+ATP +L H+ R ++ D++ ++LDEAD +
Sbjct: 101 KLNIVDVVGGMPYREQLRLLSRPVDVLVATPGRLLDHVARRRIALDEVEVLILDEADRML 160
Query: 322 DRGFGPE---ISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
D GF + I+K P + QT+L TA + + + +L+ ER
Sbjct: 161 DMGFLDDVETIAKCCPPTR-----------QTLLFTATLDRRMAQLAGNLLRNPER 205
>gi|148709265|gb|EDL41211.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Mus musculus]
Length = 633
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 191 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 250
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 251 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 293
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 294 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 353
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 354 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 389
>gi|424903669|ref|ZP_18327182.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
gi|390931542|gb|EIP88943.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
Length = 508
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 16/238 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 40 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 99
Query: 202 VYSQLDEEHHLQLVGITQML---RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FI 257
++QL + LQ + RR P+ P +VL T E A Q A +
Sbjct: 100 RFAQLQKTQALQPRAPREGQPGERRGRRPQPVA--RPGLLVLTPTRELAMQVTTAASTYG 157
Query: 258 SHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDE
Sbjct: 158 KHLRRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDE 216
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
AD + D GF +I D+ + + QT+L +A + +G + L++ ER
Sbjct: 217 ADRMLDMGFIDDI--------DTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPER 266
>gi|372276956|ref|ZP_09512992.1| ATP-dependent RNA helicase SrmB [Pantoea sp. SL1_M5]
gi|390435903|ref|ZP_10224441.1| ATP-dependent RNA helicase SrmB [Pantoea agglomerans IG1]
Length = 442
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L +++A+++ G P+ IQ IP L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 258
+Q H L P K P R +++ T E A Q A+ ++
Sbjct: 63 LQ--------HLLDF--------------PRKKSGPPRILIVTPTRELAMQVADHARELA 100
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
LD + GGV+ +V + +++AT +LQ+I++ N C + +VLDEAD
Sbjct: 101 KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEAD 160
Query: 319 TLFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 161 RMLDMGFAQDIETI 174
>gi|354471937|ref|XP_003498197.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Cricetulus
griseus]
Length = 638
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 196 IKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 255
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 256 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 298
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 299 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 358
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 359 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 394
>gi|238008396|gb|ACR35233.1| unknown [Zea mays]
gi|413955780|gb|AFW88429.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 618
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 115/227 (50%), Gaps = 33/227 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F++L L M++ + + G+ P+ IQ G+P VL+G+ ++ + +GSG+TL ++LPL+
Sbjct: 174 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 233
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFH-MAKFI-- 257
V Q +E+L+P+ P P +++C + E A Q + + +F+
Sbjct: 234 VALQ------------------EESLMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIP 275
Query: 258 ---SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ + + GGV + DV + +++ATP + + + ++ D+ RY+ L
Sbjct: 276 LKEAGYPEIRHLLCIGGVDMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTL 335
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
DEAD L D GF +I ++ + KD QT+L +A + + +
Sbjct: 336 DEADRLVDLGFEDDIKEVFDHFKDQR--------QTLLFSATMPQKI 374
>gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 512
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 12/236 (5%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL E++ A+E G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 37 SFASLGLSPEIVSALEAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 96
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPM-HPRAIVLCTTEESADQGFHMAK-FISH 259
++QL + Q + + D + +P+ P +VL T E A Q A + H
Sbjct: 97 RFAQLQKTLAQQPRTPREPSQGDRRVRRPQPVARPGLLVLTPTRELAMQVTTAASTYGKH 156
Query: 260 CARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDEAD
Sbjct: 157 LKRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDEAD 215
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
+ D GF +I I+ S QT+L +A + +G L++ ER
Sbjct: 216 RMLDMGFIDDIETIVAATPASR--------QTMLFSATLDGKIGSLTGRLLKDPER 263
>gi|118388510|ref|XP_001027352.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila]
gi|89309122|gb|EAS07110.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila SB210]
Length = 1110
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 24/178 (13%)
Query: 154 KAVEKMGLFVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHH 211
KA+E +F PS IQ + IPA+LN + L++ +G+G+TLAYL+P++ + +L+E +H
Sbjct: 72 KALESQNIFTPSPIQDLAIPALLNQNHNNFFLAAQTGTGKTLAYLIPIISQFKKLEEANH 131
Query: 212 LQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDS-SMENG 270
Q + P P I++ T+E A+Q K + H A+ + N
Sbjct: 132 NQRLTT--------------PNRPSIIIIVPTKELANQLEDECKKLIHFAKFTCLGVNNS 177
Query: 271 GV---SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 325
V KAL++ + +LI TP + +H E N+ ++ Y V+DEADT D G+
Sbjct: 178 KVFMREKKALDE----GVDVLIGTPDRIERHREKGNLFLSNVSYFVVDEADTFLDSGY 231
>gi|27545287|ref|NP_775375.1| ATP-dependent RNA helicase DDX54 [Danio rerio]
gi|20977591|gb|AAM28223.1| ATP-dependent RNA helicase [Danio rerio]
Length = 862
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 38/246 (15%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
+ ++L ++++K SG FQ +GL + K + K G VP+ IQ IP +L+
Sbjct: 62 DTRELVRAQNKKKKKSGG-------FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILD 114
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237
GK VV + +GSG+T A+L+PL + P RA
Sbjct: 115 GKDVVAMARTGSGKTAAFLVPLFEKLKA-----------------------PQAQTGARA 151
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297
++L T E A Q K + L +++ GG S + ++I TP ++
Sbjct: 152 LILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHENPDIIIGTPGRLMH 211
Query: 298 HIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
I++ N+ + YVV DEAD LF+ GF ++ +I+ L D+ QT+L +A +
Sbjct: 212 VIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDAR--------QTLLFSATL 263
Query: 358 AEMLGE 363
+++ E
Sbjct: 264 PKLIVE 269
>gi|255553305|ref|XP_002517695.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223543327|gb|EEF44859.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 585
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 108/205 (52%), Gaps = 25/205 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +FQ++ ++K ++ G+ P+ IQ G+P +L+G+ ++ + +GSG+TLA++LP+
Sbjct: 138 VKNFQDMRFPEPILKTLKAKGIVQPTPIQIQGLPVILSGRDMIGIAFTGSGKTLAFVLPM 197
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFHMA-KFI 257
+ + Q +E ++P+ P P +++C + E A Q + + +F+
Sbjct: 198 ITIAFQ------------------EEIMMPIAPREGPFGLIICPSRELARQTYEVVEQFL 239
Query: 258 SHCAR-----LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
R L + + GGV ++ +V + +++ATP + + + ++ D+ RY+
Sbjct: 240 IPTRRAGYPELRALLCVGGVDMRSQLEVVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYL 299
Query: 313 VLDEADTLFDRGFGPEISKILNPLK 337
LDEAD L D GF +I +I + K
Sbjct: 300 TLDEADRLVDLGFEDDIREIFSYFK 324
>gi|76811549|ref|YP_332327.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|126454229|ref|YP_001065030.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 1106a]
gi|242316165|ref|ZP_04815181.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106b]
gi|254196606|ref|ZP_04903030.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
S13]
gi|254260651|ref|ZP_04951705.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1710a]
gi|403517400|ref|YP_006651533.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei BPC006]
gi|76581002|gb|ABA50477.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|126227871|gb|ABN91411.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106a]
gi|169653349|gb|EDS86042.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
S13]
gi|242139404|gb|EES25806.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1106b]
gi|254219340|gb|EET08724.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
1710a]
gi|403073043|gb|AFR14623.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
BPC006]
Length = 485
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|308187815|ref|YP_003931946.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
gi|308058325|gb|ADO10497.1| ATP-dependent RNA helicase [Pantoea vagans C9-1]
Length = 442
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L +++A+++ G P+ IQ IP L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 258
+Q H L P K P R +++ T E A Q A+ ++
Sbjct: 63 LQ--------HLLDF--------------PRKKSGPPRILIVTPTRELAMQVADHARELA 100
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
LD + GGV+ +V + +++AT +LQ+I++ N C + +VLDEAD
Sbjct: 101 KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEAD 160
Query: 319 TLFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 161 RMLDMGFAQDIETI 174
>gi|357607424|gb|EHJ65488.1| vasa-like protein [Danaus plexippus]
Length = 606
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 113/230 (49%), Gaps = 20/230 (8%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K +G N + SF+ L+ ++ + K G P+ IQ IP ++NG+ ++ + +GS
Sbjct: 179 KVTGENPPRAIESFETANLRNYVLNNILKSGYKKPTPIQKHAIPIIMNGRDLMGCAQTGS 238
Query: 190 GRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
G+T A+LLP++ + Q LR + + P P+ +++ T E Q
Sbjct: 239 GKTAAFLLPIINT--------------LLQDLR-ELVVGPNGCAQPQVVIVAPTRELTIQ 283
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
F+ A+ S+ + L ++ GG + + D + +L+ATP + ++ VS D +
Sbjct: 284 IFNEARKFSYGSILKIAVAYGGTAVRHQGDNISRGCHILVATPGRLHDFVDRNRVSFDSV 343
Query: 310 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
R+VVLDEAD + D GF P + K++ D N QT++ +A E
Sbjct: 344 RFVVLDEADRMLDMGFMPSVEKMM----DHPTMVNITERQTLMFSATFPE 389
>gi|209808966|ref|YP_002264504.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
gi|208010528|emb|CAQ80896.1| putative ATP-dependent RNA helicase (DEAD/DEAH box helicase)
[Aliivibrio salmonicida LFI1238]
Length = 495
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 21/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F LGL A ++KAVE G PS IQ IPAV+ GK V+ ++ +G+G+T + LPL++
Sbjct: 2 GFTSLGLSAPILKAVEAQGYSTPSPIQLQAIPAVIEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S+ Q L+ ++ RA++L T E A Q + S
Sbjct: 62 RLSK------------GQKLKFNQV---------RALILTPTRELAAQVHESVEKYSVNL 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV + + +L+ATP +L + D + +VLDEAD +
Sbjct: 101 PLTSDVVFGGVKANPQMQRLRKGVDVLVATPGRLLDLANQNAIKFDQLEILVLDEADRML 160
Query: 322 DRGFGPEISKILNPL 336
D GF +I KILN L
Sbjct: 161 DMGFIHDIKKILNKL 175
>gi|195024659|ref|XP_001985916.1| GH21077 [Drosophila grimshawi]
gi|193901916|gb|EDW00783.1| GH21077 [Drosophila grimshawi]
Length = 790
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 38/229 (16%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
++++SF ++ L +++A+ +G P+ IQ IP L G+ + + +G+G+T AY+L
Sbjct: 155 DLITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPIALLGRDICGCAATGTGKTAAYML 214
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI----VLCTTEESADQGFHM 253
P V E LL +P++ +AI VL T E Q + +
Sbjct: 215 PTV------------------------ERLL-YRPLNNKAITRVLVLVPTRELGAQVYQV 249
Query: 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYV 312
K + +D + GG+ KA E V ++IATP ++ HI++ + S D I +
Sbjct: 250 TKQLCQFTSIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRLIDHIKNTPSFSLDSIEVL 309
Query: 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+LDEAD + D F ++ +I+N S K+ QT+L +A ++E +
Sbjct: 310 ILDEADRMLDEYFAEQMKEIIN----SCCKTR----QTMLFSATMSEQV 350
>gi|124383654|ref|YP_001028341.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|124291674|gb|ABN00943.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
Length = 488
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|47223591|emb|CAF99200.1| unnamed protein product [Tetraodon nigroviridis]
Length = 532
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 118/248 (47%), Gaps = 38/248 (15%)
Query: 116 QPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV 175
+P+ +++ ++++K SG FQ +GL + K V + G VP+ IQ IP +
Sbjct: 19 EPDTREMVRAQNKKKKKSGG-------FQSMGLSFPVFKGVMRKGYKVPTPIQRKTIPVI 71
Query: 176 LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235
L+GK VV + +GSG+T A+L+P M R +A P
Sbjct: 72 LDGKDVVAMARTGSGKTAAFLIP---------------------MFERLKA--PQAQTGA 108
Query: 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295
RA++L T E A Q K + +L +++ GG S + ++I TP +
Sbjct: 109 RALILSPTRELALQTMKFTKELGKFTKLKTALILGGDSMDDQFAALHENPDIIIGTPGRL 168
Query: 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355
+ I++ N+ ++ YVV DEAD LF+ GF ++ +I+ ++ QT+L +A
Sbjct: 169 MHVIKEMNLKLQNVEYVVFDEADRLFEMGFAEQLQEIIRRFPETR--------QTLLFSA 220
Query: 356 AIAEMLGE 363
+ +++ E
Sbjct: 221 TLPKVIVE 228
>gi|240994916|ref|XP_002404560.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
gi|215491582|gb|EEC01223.1| DEAD box protein abstrakt, putative [Ixodes scapularis]
Length = 568
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 138/285 (48%), Gaps = 37/285 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F+E+ ++ ++ + G+ P+ IQ G+PAVL+G+ ++ + +GSG+TL ++LPL
Sbjct: 126 ITTFKEMKFPRTILASLRRKGITQPTPIQMQGLPAVLSGRDMIGIAFTGSGKTLVFVLPL 185
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L V ++E P +V+C + E A Q F + F
Sbjct: 186 LMFC--LEQEKRLPFV-------QNEG--------PYGLVVCPSRELAKQTFEIVSFFVR 228
Query: 260 CAR------LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
L + GG S + ++ + +++ATP ++ ++ + V+ D RY+
Sbjct: 229 ALEEAGYPSLRGCLCIGGTSVREQLEIVRRGVHVMVATPGRLMDMLDKKMVNLDMCRYLC 288
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF ++ I + K GQ QT+L +A + + + S +
Sbjct: 289 LDEADRMIDMGFEEDVRTIFSFFK-------GQR-QTLLFSATMPKKIQNFARSALVKPI 340
Query: 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A L++ Q + E+ K+V +++L +AP
Sbjct: 341 TVNVGRAGAASLDVVQEVEYVKQEA------KIVHLLETLQKTAP 379
>gi|407043198|gb|EKE41803.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 684
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 120/254 (47%), Gaps = 46/254 (18%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E+QQ S++ KSSG FQ +GL + + V K G VP+ IQ IPA+L
Sbjct: 2 EEQQ-----SKKSKSSGG-------FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILR 49
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237
G ++ + +GSG+T AYL+P++ E H + V R+
Sbjct: 50 GNDIIAMARTGSGKTAAYLVPIINRL----ETHSTEGV--------------------RS 85
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVL 296
+++C T E A Q + + L +S+ GG S +++S+ P +++ATP +
Sbjct: 86 LIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSGP-DIIVATPGRLT 144
Query: 297 QHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356
+E N+S + + V DEAD +F+ GF ++S I+ L + Q +L +A
Sbjct: 145 FILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTR--------QILLFSAT 196
Query: 357 IAEMLGEQLSSLME 370
+ L E L + ++
Sbjct: 197 LPRNLAEFLKNTLK 210
>gi|260901110|ref|ZP_05909505.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AQ4037]
gi|308109381|gb|EFO46921.1| ATP-dependent RNA helicase, DEAD-box family [Vibrio
parahaemolyticus AQ4037]
Length = 307
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 29/199 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++K ++ P++IQ IP + GK ++ SS +GSG+TLA++LP
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSKTGSGKTLAFVLP---- 58
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFIS 258
ML + PRA++L T E A Q + M +S
Sbjct: 59 -----------------MLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSMLAGLS 101
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ A L EN KAL ++ATP + H+E R++ D + ++LDEAD
Sbjct: 102 YDAALILGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLYLDGLETLILDEAD 157
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF PE+ +I N K
Sbjct: 158 RMLDLGFAPELRRIHNAAK 176
>gi|126727175|ref|ZP_01743012.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
gi|126703603|gb|EBA02699.1| ATP-dependent RNA helicase RhlE [Rhodobacterales bacterium
HTCC2150]
Length = 574
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 22/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F EL L +++KAV + G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSELSLDPKVLKAVAETGYESPTPIQAGAIPPALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ + S+ R A +P R++VL T E A Q S
Sbjct: 61 ISLLSK----------------GRARARMP------RSLVLAPTRELAAQVAENFDAYSK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
++L ++ GGVS K + + + + +LIATP +L H+E + ++ +V+DEAD
Sbjct: 99 YSKLTKALLIGGVSFKEQDKLIDRGVDVLIATPGRLLDHVERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKIL 333
+ D GF P+I +I
Sbjct: 159 MLDMGFIPDIERIF 172
>gi|451812388|ref|YP_007448842.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451778290|gb|AGF49238.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 444
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 107/197 (54%), Gaps = 17/197 (8%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF+ GL +++ ++++G P+ IQ IP +L+G + ++ +G+G+T A++LP+
Sbjct: 13 LNSFRSFGLDNSILRVLDEIGYIKPTLIQESAIPNILSGSDFIGAAQTGTGKTAAFVLPI 72
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L+ + ++ P + + R+++L T E ADQ + K S
Sbjct: 73 IN-----------RLIPFA-----NNSVSPARHL-LRSLILVPTRELADQVYECVKLYSK 115
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L S + GGV + + + + +LIATP ++ H+ +NVS ++ +VLDEAD
Sbjct: 116 NTELRSLVLFGGVDLEQQKVLLHRGCEILIATPGRLIAHMSQKNVSLINVDILVLDEADR 175
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF P++ +I+ L
Sbjct: 176 MLDMGFMPDVDRIVGML 192
>gi|167903972|ref|ZP_02491177.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
NCTC 13177]
Length = 430
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|7022398|dbj|BAA91585.1| unnamed protein product [Homo sapiens]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPATILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDTGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|325180097|emb|CCA14499.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 836
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 34/223 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ LGL + +AV MG VP+ IQ +P +L+GK VV + +GSG++ A+L+PL++
Sbjct: 28 FQHLGLSNPVYRAVMAMGYKVPTPIQRKSLPLILSGKDVVGMARTGSGKSAAFLIPLIE- 86
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+L E H VG+ R +VL T E A Q K ++
Sbjct: 87 --KLKE--HSTRVGL------------------RGLVLAPTRELALQTLQFTKGLAKYTS 124
Query: 263 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTL 320
L S+ GG + +++ P +L+ATP ++ H+++ + + + YVV DEAD L
Sbjct: 125 LRVSLIVGGEGMEQQFSALASNP-DILVATPGRLMHHLQEIPDFNLKSVEYVVFDEADRL 183
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
F+ GF ++ +IL+ + + QT+L +A + +L +
Sbjct: 184 FEMGFADQLHEILSQMPPNR--------QTLLFSATLPSVLAQ 218
>gi|113461438|ref|YP_719507.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 129PT]
gi|112823481|gb|ABI25570.1| ATP-dependent RNA helicase [Haemophilus somnus 129PT]
Length = 441
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 21/186 (11%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ F++ L +++KA+ + G P+ IQ IPA++ + V+ S+ +G+G+T A+LLP +
Sbjct: 4 TQFEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPAL 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 64 Q---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQF 102
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L + GGV+ + +V N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 103 THLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRM 162
Query: 321 FDRGFG 326
GFG
Sbjct: 163 LQMGFG 168
>gi|67479813|ref|XP_655288.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472415|gb|EAL49901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703391|gb|EMD43850.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba
histolytica KU27]
Length = 684
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 120/254 (47%), Gaps = 46/254 (18%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E+QQ S++ KSSG FQ +GL + + V K G VP+ IQ IPA+L
Sbjct: 2 EEQQ-----SKKSKSSGG-------FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILR 49
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237
G ++ + +GSG+T AYL+P++ E H + V R+
Sbjct: 50 GNDIIAMARTGSGKTAAYLVPIINRL----ETHSTEGV--------------------RS 85
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVL 296
+++C T E A Q + + L +S+ GG S +++S+ P +++ATP +
Sbjct: 86 LIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSGP-DIIVATPGRLT 144
Query: 297 QHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356
+E N+S + + V DEAD +F+ GF ++S I+ L + Q +L +A
Sbjct: 145 FILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTR--------QILLFSAT 196
Query: 357 IAEMLGEQLSSLME 370
+ L E L + ++
Sbjct: 197 LPRNLAEFLKNTLK 210
>gi|399886888|gb|AFP52950.1| vasa [Euphyllia ancora]
Length = 675
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 25/263 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F + L V+K G P+ +Q IPA+L G+ V+ + +GSG+T A+LLP+
Sbjct: 222 IQGFHQAQLYETFQGNVKKAGYTKPTPVQKYAIPAILAGRDVMACAQTGSGKTAAFLLPV 281
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRD--EALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
+T ML++ + + P+A+++ T E A Q ++ A+
Sbjct: 282 -----------------MTGMLQKGLTSSAMTAGAHSPQALIISPTRELALQIYNEARKF 324
Query: 258 SHCARLDSSMENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
SH L ++ GGVS + L + N +L+ATP + +E +S ++Y++LDE
Sbjct: 325 SHSTMLVPAVAYGGVSVQHQLRQLQNKGCNLLVATPGRLADFVEKDRISLKAVQYLILDE 384
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376
AD + D GF P+I I+ + A QT++ +A E + +
Sbjct: 385 ADRMLDMGFEPKIRSIVENMGMPAKSER----QTLMFSATFPEEIQRLAGDFLNDYIFLT 440
Query: 377 AGKVTAMLLEMDQAEVFDLTESQ 399
G+V ++ Q V D+ E Q
Sbjct: 441 VGRVGGTTSDIQQT-VMDVPEDQ 462
>gi|237810939|ref|YP_002895390.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
gi|237503374|gb|ACQ95692.1| ATP-dependent RNA helicase RhlE [Burkholderia pseudomallei MSHR346]
Length = 488
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|167382487|ref|XP_001736127.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
gi|165901566|gb|EDR27644.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
SAW760]
Length = 684
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 120/254 (47%), Gaps = 46/254 (18%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E+QQ S++ KSSG FQ +GL + + V K G VP+ IQ IPA+L
Sbjct: 2 EEQQ-----SKKSKSSGG-------FQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILR 49
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237
G ++ + +GSG+T AYL+P++ E H + V R+
Sbjct: 50 GNDIIAMARTGSGKTAAYLVPIINRL----ETHSTEGV--------------------RS 85
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVL 296
+++C T E A Q + + L +S+ GG S +++S+ P +++ATP +
Sbjct: 86 LIICPTRELALQTIKVFNELGKLTNLKASLIIGGSKLSDQFDNLSSGP-DIIVATPGRLT 144
Query: 297 QHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356
+E N+S + + V DEAD +F+ GF ++S I+ L + Q +L +A
Sbjct: 145 FILEGANISLNRVEMVCFDEADLMFESGFSEQVSDIMRMLPPTR--------QILLFSAT 196
Query: 357 IAEMLGEQLSSLME 370
+ L E L + ++
Sbjct: 197 LPRNLAEFLKNTLK 210
>gi|129277522|ref|NP_001076071.1| probable ATP-dependent RNA helicase DDX41 [Bos taurus]
gi|126717403|gb|AAI33466.1| DDX41 protein [Bos taurus]
gi|296485512|tpg|DAA27627.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Bos taurus]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 378
>gi|15896005|ref|NP_349354.1| DEAD/DEAH box helicase [Clostridium acetobutylicum ATCC 824]
gi|337737958|ref|YP_004637405.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum DSM
1731]
gi|384459469|ref|YP_005671889.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|15025785|gb|AAK80694.1|AE007772_6 ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum ATCC 824]
gi|325510158|gb|ADZ21794.1| ATP dependent RNA helicase DeaD, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|336292304|gb|AEI33438.1| DEAD-box ATP dependent DNA helicase [Clostridium acetobutylicum DSM
1731]
Length = 481
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 122/267 (45%), Gaps = 52/267 (19%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF++LGL E++K++EK+G PS IQ IP +LNGK ++ + +GSG+T A+ +P+ +
Sbjct: 5 SFRDLGLSEEILKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAIPVCE 64
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ ++ P+ +VL T E A Q I
Sbjct: 65 -------------------------KIELEEREPQVLVLAPTRELAYQIKEDFLNIGRFK 99
Query: 262 RLDSSMENGGVSSKALEDVSNA------PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315
RL +S E +SN + +++ TP VL HIE ++ + ++Y ++D
Sbjct: 100 RLRC------ISIFGKEPISNQIRELKQRVHIVVGTPGRVLDHIERGTLNLEKVKYFIID 153
Query: 316 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE---MLGEQLSSLMECL 372
EAD + + GF ++ IL + + T L +A + E ML ++ E +
Sbjct: 154 EADEMLNMGFIEQVESILIKMPKNK--------NTFLFSATLPEEIVMLSKKYMKNFENI 205
Query: 373 ERDNAGK----VTAMLLEMDQAEVFDL 395
E N GK + + E++ E FDL
Sbjct: 206 EVQNEGKTKGGIHQVYYEVESREKFDL 232
>gi|424902243|ref|ZP_18325759.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
gi|390932618|gb|EIP90018.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
Length = 482
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHTFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSAVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|328778605|ref|XP_001122266.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Apis
mellifera]
Length = 739
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 105/228 (46%), Gaps = 34/228 (14%)
Query: 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194
SN E ++F ++ L ++KA+ M P+ IQ IP L G+ + + +G+G+T A
Sbjct: 150 SNIESHATFHQMNLSRPLLKAITAMNFVHPTPIQAATIPVALMGRDICGCAATGTGKTAA 209
Query: 195 YLLPLVQ--VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 252
Y+LP ++ +Y LD P R +VL T E Q +
Sbjct: 210 YMLPTLERLLYRPLD-----------------------GPAISRVLVLVPTRELGVQVYQ 246
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRY 311
+ K +S ++ + GG+ KA E V ++IATP ++ H+++ S D I
Sbjct: 247 VTKQLSQFTTIEVGLSVGGLDVKAQEAVLRRNPDIVIATPGRLIDHLKNTPTFSLDSIEV 306
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
++LDEAD + D F ++ I +K + QTIL +A + E
Sbjct: 307 LILDEADRMLDEYFAEQMKYI--------VKQCSRSRQTILFSATMTE 346
>gi|224085049|ref|XP_002307470.1| predicted protein [Populus trichocarpa]
gi|222856919|gb|EEE94466.1| predicted protein [Populus trichocarpa]
Length = 510
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 34/223 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ L L + + +++ G VP+ IQ +P +L G VV + +GSG+T A+LLP+++
Sbjct: 27 FESLNLSPNVFRGIKRKGYRVPTPIQRKTMPLILAGIDVVAMARTGSGKTAAFLLPMLEK 86
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
Q HL G+ RA++L T + A Q K +
Sbjct: 87 LKQ-----HLPQSGV------------------RALILSPTRDLALQTLKFTKELGRFTD 123
Query: 263 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHI-EDRNVSCDDIRYVVLDEADTL 320
L S+ GG ++ ED+S P ++IATP ++ H+ E ++S + YVV DEAD+L
Sbjct: 124 LRISLLVGGDRMESQFEDLSQNP-DIIIATPGRLMHHLSEIDDMSLKTVEYVVFDEADSL 182
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
F GF ++ KIL L ++ QT+L +A + L E
Sbjct: 183 FGMGFAEQLHKILTQLSENR--------QTLLFSATLPSALAE 217
>gi|352100041|ref|ZP_08957968.1| ATP-dependent RNA helicase RhlE [Halomonas sp. HAL1]
gi|350601389|gb|EHA17435.1| ATP-dependent RNA helicase RhlE [Halomonas sp. HAL1]
Length = 420
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF ELGL A++++AV G VP+ IQ IP VL G+ ++ S+ +G+G+T + LP++Q
Sbjct: 2 SFSELGLHADLLRAVTAQGYTVPTPIQREAIPVVLEGRDMLASAQTGTGKTAGFTLPMLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHC 260
R + P K RA+VL T E A Q G ++ + H
Sbjct: 62 --------------------RLNTGKQPGK-RQVRALVLTPTRELAAQVGESVSTYGQHL 100
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
A L S + GGV + D A + +L+ATP +L + +V + +VLDEAD +
Sbjct: 101 A-LRSHIIFGGVGQQPQIDALKAGLDVLVATPGRLLDLHQQGHVDLSSVEILVLDEADRM 159
Query: 321 FDRGFGPEISKIL 333
D GF +I ++L
Sbjct: 160 LDMGFIHDIKRLL 172
>gi|253689449|ref|YP_003018639.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251756027|gb|ACT14103.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 441
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q L+ + K PR ++L T E A Q A+ +
Sbjct: 63 LQ-----------HLIDFPR----------KKSGPPRILILTPTRELAMQVADQARAFAA 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGV+ +V + +++AT +LQ+I++ N C + ++LDEAD
Sbjct: 102 HTHLDVATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 162 MLDMGFAQDIEHI 174
>gi|170718456|ref|YP_001783672.1| ATP-dependent RNA helicase SrmB [Haemophilus somnus 2336]
gi|168826585|gb|ACA31956.1| DEAD/DEAH box helicase domain protein [Haemophilus somnus 2336]
Length = 444
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 21/186 (11%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ F++ L +++KA+ + G P+ IQ IPA++ + V+ S+ +G+G+T A+LLP +
Sbjct: 8 TQFEDFDLAPQLLKALAQKGYSRPTVIQLDAIPAIMEARDVLGSAPTGTGKTAAFLLPAL 67
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q HL RR KP PR +VL T E A Q A+ ++
Sbjct: 68 Q---------HL-----LDYPRR-------KPGPPRILVLTPTRELAMQVAEQAEELAQF 106
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L + GGV+ + +V N +++ATP +LQ+I++ N C + ++ DEAD +
Sbjct: 107 THLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLLQYIKEENFDCRAVEILIFDEADRM 166
Query: 321 FDRGFG 326
GFG
Sbjct: 167 LQMGFG 172
>gi|301785524|ref|XP_002928176.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like
[Ailuropoda melanoleuca]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|149204620|ref|ZP_01881585.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
gi|149141879|gb|EDM29929.1| ATP-dependent RNA helicase RhlE [Roseovarius sp. TM1035]
Length = 506
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLNPKVLKAIEEAGYETPTPIQAEAIPHALVGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q S
Sbjct: 61 LS------------------LLSRGRARARM----PRSLVLCPTRELAAQVAENFDTYSK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HLKLTKALLIGGVSFKEQDKLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 159 MLDMGFIPDIERIFS 173
>gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
Length = 475
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 16/238 (6%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F LGL E++ A++ G P+ +Q IPA + G+ +++SS +GSG+T A++LP ++
Sbjct: 40 TFASLGLSPEIVSALQAAGYVKPTPVQQRAIPAGIAGRDLLVSSPTGSGKTAAFMLPAIE 99
Query: 202 VYSQLDEEHHLQLVGITQML---RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FI 257
++QL + LQ + RR P+ P +VL T E A Q A +
Sbjct: 100 RFAQLQKTQALQPRAPREGQPGERRGRRPQPVA--RPGLLVLTPTRELAMQVTTAASTYG 157
Query: 258 SHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
H RL + GGV+ + L ++ P +L+ATP +L H+E + +++ +VLDE
Sbjct: 158 KHLRRLRTVSILGGVAYGQQLMLLAKNP-EILVATPGRLLDHLERGRIDLSELKMLVLDE 216
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
AD + D GF +I D+ + + QT+L +A + +G + L++ ER
Sbjct: 217 ADRMLDMGFIDDI--------DTIVAATPASRQTMLFSATLDGKIGSLTNRLLKDPER 266
>gi|452126889|ref|ZP_21939472.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|452130262|ref|ZP_21942834.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
gi|451920187|gb|EMD70333.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
gi|451921984|gb|EMD72129.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
Length = 441
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 27/223 (12%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
SSF +LGL +++A+ + G P+ IQ IP VL G ++ ++ +G+G+T + LP++
Sbjct: 15 SSFADLGLADTLLRAIAETGYTAPTPIQAQAIPQVLRGGDLLAAAQTGTGKTAGFTLPIL 74
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+ SQ T+ +R +P PR ++L T E Q +
Sbjct: 75 HLLSQ------------TKPAKR-------QPGRPRCLILTPTRELTAQVAESVQVYGKH 115
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S + G V+ P+ +L+ATP +L H R V + +VLDEAD +
Sbjct: 116 TSLTSMVMFGSVNINPQISALRKPVDILVATPGRLLDHAGQRTVDLSGVEILVLDEADRM 175
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
D GF +I K+L L S Q +L +A +E + E
Sbjct: 176 LDMGFIRDIRKVLALLPKSR--------QNLLFSATFSEEIRE 210
>gi|367036228|ref|XP_003667396.1| hypothetical protein MYCTH_2313207 [Myceliophthora thermophila ATCC
42464]
gi|347014669|gb|AEO62151.1| hypothetical protein MYCTH_2313207 [Myceliophthora thermophila ATCC
42464]
Length = 589
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 23/196 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF EL L + +KA+++MG +EIQ GIP +L GK V+ ++ +GSG+TLA+L+P V+
Sbjct: 116 SFSELNLSEKTMKAIDEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVE 175
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPR-AIVLCTTEESADQGFHMAKFISHC 260
+ S L KP + AIV+ T E A Q F +A+ +
Sbjct: 176 MLSALR----------------------FKPRNGTGAIVVTPTRELALQIFGVARELMKH 213
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ GG + +A D + +LIATP +L H+++ ++R +++DEAD +
Sbjct: 214 HTQTYGVVIGGANRRAEADKLGKGVNLLIATPGRLLDHLQNTPFVFKNLRSLIIDEADRI 273
Query: 321 FDRGFGPEISKILNPL 336
+ GF E+ +I+ L
Sbjct: 274 LEIGFEDEMRQIVKIL 289
>gi|217419732|ref|ZP_03451238.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
576]
gi|217397036|gb|EEC37052.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
576]
Length = 485
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|262173979|ref|ZP_06041656.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
gi|261891337|gb|EEY37324.1| ATP-dependent RNA helicase [Vibrio mimicus MB-451]
Length = 422
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 18/200 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E + +F +LGL ++ + +G+ P+ IQ IP VL GK V+ + +G+G+T A+
Sbjct: 2 SETLITFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q + I Q R+E RA+VL T E A Q +
Sbjct: 62 LPLIQRF-------------IEQPWVREE-----NSKEIRALVLVPTRELAQQVLDSMQA 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L GG S K + + +LIATP +L H +++ + +VLDE
Sbjct: 104 YAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ ++L L
Sbjct: 164 ADRMLDMGFMPDLQRVLRRL 183
>gi|260770147|ref|ZP_05879080.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
gi|260615485|gb|EEX40671.1| ATP-dependent RNA helicase [Vibrio furnissii CIP 102972]
Length = 422
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 18/197 (9%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S F LG+ +++ + +G+ P+EIQ IP VL GK V+ + +G+G+T A+ LPL+
Sbjct: 6 SPFLPLGIAPALVERLSALGIHTPTEIQAQAIPHVLEGKDVLAGAQTGTGKTAAFGLPLI 65
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
Q + +H LQ ++ +R A+VL T E A Q F + +
Sbjct: 66 QRFV----DHPLQREPNSKDIR--------------ALVLVPTRELAQQVFDNLQSYAQG 107
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ L GG S + +LIATP +L H + + + +VLDEAD +
Sbjct: 108 SELKIVTAYGGTSMNVQKQNLRGGADILIATPGRLLDHAHVKTLYLGNAEALVLDEADRM 167
Query: 321 FDRGFGPEISKILNPLK 337
D GF P+I ++L ++
Sbjct: 168 LDMGFMPDIQRVLRKMQ 184
>gi|302878537|ref|YP_003847101.1| DEAD/DEAH box helicase [Gallionella capsiferriformans ES-2]
gi|302581326|gb|ADL55337.1| DEAD/DEAH box helicase domain protein [Gallionella
capsiferriformans ES-2]
Length = 461
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 31/201 (15%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F +L L E+++A+ + G P+ IQ IP VL G ++ + +G+G+T A+ LP+
Sbjct: 1 MNNFADLNLAPEILRALIESGYTKPTPIQAQAIPLVLEGSDLMAGAQTGTGKTAAFALPV 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-------RAIVLCTTEESADQGFH 252
+Q L+P P RA++L T E A Q
Sbjct: 61 LQ------------------------KLMPFASSSPSPARHAVRALILVPTRELAIQVEA 96
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
K + + L S + GGV K A I +L+ATP +L HIE ++V + ++ +
Sbjct: 97 SVKAYAKYSHLRSLVVFGGVDIKTQTPHLRAGIEILVATPGRLLDHIEQKSVQLNQVQML 156
Query: 313 VLDEADTLFDRGFGPEISKIL 333
VLDEAD + D GF P++ +IL
Sbjct: 157 VLDEADRMLDMGFMPDLKRIL 177
>gi|6118555|gb|AAF04150.1|AF195417_1 DEAD-box protein abstrakt [Homo sapiens]
Length = 621
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 179 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 239 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 281
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 282 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 341
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 342 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 377
>gi|395736563|ref|XP_002816330.2| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Pongo abelii]
Length = 802
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 124/256 (48%), Gaps = 31/256 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 360 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 419
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 420 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 462
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 463 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 522
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 523 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATMPKKIQNFAKSALVKPV 574
Query: 374 RDNAGKVTAMLLEMDQ 389
N G+ A L++ Q
Sbjct: 575 TINVGRAGAASLDVIQ 590
>gi|355683291|gb|AER97077.1| DEAD box polypeptide 41 [Mustela putorius furo]
Length = 621
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|367055746|ref|XP_003658251.1| hypothetical protein THITE_2124801 [Thielavia terrestris NRRL 8126]
gi|347005517|gb|AEO71915.1| hypothetical protein THITE_2124801 [Thielavia terrestris NRRL 8126]
Length = 594
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F ELGL + +KA+ +MG +EIQ GIP +L GK V+ ++ +GSG+TLA+L+P V++
Sbjct: 122 FSELGLSEKTMKAIAEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEM 181
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPR-AIVLCTTEESADQGFHMAKFISHCA 261
S L KP + AIV+ T E A Q F +A+ +
Sbjct: 182 LSSLR----------------------FKPRNGTGAIVVTPTRELALQIFGVARELMKNH 219
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ GG + +A D + +LIATP +L H+++ ++R +++DEAD +
Sbjct: 220 SQTYGVVIGGANRRAEADKLGKGVNLLIATPGRLLDHLQNTPFVFKNLRSLIIDEADRIL 279
Query: 322 DRGFGPEISKILNPL 336
+ GF E+ +I+ L
Sbjct: 280 EIGFEDEMRQIVKIL 294
>gi|167718208|ref|ZP_02401444.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
DM98]
Length = 434
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|440898373|gb|ELR49887.1| Putative ATP-dependent RNA helicase DDX41, partial [Bos grunniens
mutus]
Length = 614
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 172 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 231
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 232 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 274
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 275 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 334
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 335 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 370
>gi|304398629|ref|ZP_07380501.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|440757280|ref|ZP_20936468.1| ATP-dependent RNA helicase SrmB [Pantoea agglomerans 299R]
gi|304353840|gb|EFM18215.1| DEAD/DEAH box helicase domain protein [Pantoea sp. aB]
gi|436428839|gb|ELP26488.1| ATP-dependent RNA helicase SrmB [Pantoea agglomerans 299R]
Length = 442
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L +++A+++ G P+ IQ IP L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLQALQEKGFTRPTVIQAAAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 258
+Q H L P K P R +++ T E A Q A+ ++
Sbjct: 63 LQ--------HLLDF--------------PRKKSGPPRILIVTPTRELAMQVADHARELA 100
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
LD + GGV+ +V + +++AT +LQ+I++ N C + +VLDEAD
Sbjct: 101 KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLVLDEAD 160
Query: 319 TLFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 161 RMLDMGFAQDIETI 174
>gi|30584005|gb|AAP36251.1| Homo sapiens DEAD-box protein abstrakt [synthetic construct]
gi|61369941|gb|AAX43416.1| DEAD box polypeptide 41 [synthetic construct]
gi|61369946|gb|AAX43417.1| DEAD box polypeptide 41 [synthetic construct]
Length = 623
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 378
>gi|193683780|ref|XP_001952119.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Acyrthosiphon
pisum]
Length = 615
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 115/225 (51%), Gaps = 33/225 (14%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ L ++ + + G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LPL
Sbjct: 173 LKSFKEMKLNKGIMAGLSQKGIKKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPL 232
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGF----HMA 254
+ + + Q ++ LP KP P +++C + E A Q F H
Sbjct: 233 L-------------MFCLEQEIK-----LPFKPNEGPYGLIICPSRELAKQTFDIINHYM 274
Query: 255 KFI--SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
F+ S+ RL S + GG+ DV + +++ATP ++ ++ + ++ + RY+
Sbjct: 275 TFLERSNYPRLRSCLAIGGIPVFESLDVIKRGVHIMVATPGRLMDMLDKKMINLEVCRYL 334
Query: 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+DEAD + D GF ++ I + + GQ QT+L +A +
Sbjct: 335 CMDEADRMIDMGFEEDVRTIFSFFQ-------GQR-QTLLFSATM 371
>gi|83719171|ref|YP_441164.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|257140174|ref|ZP_05588436.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83652996|gb|ABC37059.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 482
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ G + + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENR----GARRAV--------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|417515860|gb|JAA53735.1| putative ATP-dependent RNA helicase DDX41 [Sus scrofa]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 378
>gi|344265764|ref|XP_003404952.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX41-like, partial [Loxodonta africana]
Length = 613
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|343961729|dbj|BAK62454.1| probable ATP-dependent RNA helicase DDX41 [Pan troglodytes]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|343495002|ref|ZP_08733210.1| ATP-dependent RNA helicase [Vibrio nigripulchritudo ATCC 27043]
gi|342824125|gb|EGU58692.1| ATP-dependent RNA helicase [Vibrio nigripulchritudo ATCC 27043]
Length = 416
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 28/216 (12%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ LGL ++ + ++G + +Q IP +L+GK V+ + +G+G+T AY LP++Q
Sbjct: 3 FENLGLTPALLSRITQLGFKEATTVQEKSIPHILDGKDVLAGAQTGTGKTAAYGLPIIQ- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
R ++ P+ R++VL T E A Q +H
Sbjct: 62 -------------------RLIKSPKPLTDKLVRSLVLVPTRELAQQVLENLSSYAHELD 102
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
+ GG S K + + +L+ATP +L H+ +N+ ++ +VLDEAD + D
Sbjct: 103 VKVLAVYGGTSMKVQTEKLQGGVDILVATPGRLLDHLFTKNIQLNETEVLVLDEADRMLD 162
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
GF P+I +IL L D+ QT+ +A A
Sbjct: 163 MGFMPDIQRILRRLNDAR--------QTLFFSATFA 190
>gi|62896755|dbj|BAD96318.1| DEAD-box protein abstrakt variant [Homo sapiens]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|359786465|ref|ZP_09289600.1| DEAD/DEAH box helicase [Halomonas sp. GFAJ-1]
gi|359296315|gb|EHK60568.1| DEAD/DEAH box helicase [Halomonas sp. GFAJ-1]
Length = 443
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 104/192 (54%), Gaps = 22/192 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL + +++A+ ++G P+ IQ IP +L+GK ++ ++ +G+G+T A++LPL++
Sbjct: 47 FSKLGLSSPLVQAITELGYKAPTPIQEQAIPVILSGKDLIATAQTGTGKTAAFVLPLLEK 106
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA 261
+S+ E P++ RA++L T E A Q +A++ H
Sbjct: 107 FSKTAE--------------------PLRGKRIRALILVPTRELAVQVEASVAQYSKHT- 145
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S GGV + ++ + +L+ATP +L R + D+++ +VLDEAD +
Sbjct: 146 QLTSMAAYGGVDTAPQKERLIEGVDILVATPGRLLDLAHQRALHFDELQVMVLDEADRMV 205
Query: 322 DRGFGPEISKIL 333
D GF +I KI+
Sbjct: 206 DMGFVDDIHKII 217
>gi|110680443|ref|YP_683450.1| ATP-dependent RNA helicase [Roseobacter denitrificans OCh 114]
gi|109456559|gb|ABG32764.1| ATP-dependent RNA helicase, putative [Roseobacter denitrificans OCh
114]
Length = 505
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F EL L +++KA+++ G P+ IQ IP L G+ V+ + +G+G+T ++ LP++
Sbjct: 24 FSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMIT- 82
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+L R A M PR++VLC T E A Q + +
Sbjct: 83 -----------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHLK 121
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD + D
Sbjct: 122 LTKALLIGGVSFKEQDKLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLD 181
Query: 323 RGFGPEISKI--LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
GF P+I +I L P QT+ +A +A + ++ + ER
Sbjct: 182 MGFIPDIERIFSLTPFTR----------QTLFFSATMAPEIERITNTFLSAPER 225
>gi|296193469|ref|XP_002744529.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Callithrix
jacchus]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|167844421|ref|ZP_02469929.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
B7210]
Length = 427
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|410949088|ref|XP_003981256.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Felis catus]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 378
>gi|421081934|ref|ZP_15542834.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae CFBP 3304]
gi|401703334|gb|EJS93557.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae CFBP 3304]
Length = 441
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q L+ + K PR ++L T E A Q A+ +
Sbjct: 63 LQ-----------HLIDFPR----------KKSGPPRILILTPTRELAMQVADQARAFAA 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGV+ +V + +++AT +LQ+I++ N C + ++LDEAD
Sbjct: 102 HTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 162 MLDMGFAQDIEHI 174
>gi|395861175|ref|XP_003802869.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Otolemur
garnettii]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|21071032|ref|NP_057306.2| probable ATP-dependent RNA helicase DDX41 [Homo sapiens]
gi|55625482|ref|XP_518135.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3 [Pan
troglodytes]
gi|397470614|ref|XP_003806913.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Pan paniscus]
gi|426351200|ref|XP_004043145.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Gorilla
gorilla gorilla]
gi|20532370|sp|Q9UJV9.2|DDX41_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX41; AltName:
Full=DEAD box protein 41; AltName: Full=DEAD box protein
abstrakt homolog
gi|15930065|gb|AAH15476.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Homo sapiens]
gi|119605387|gb|EAW84981.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_d [Homo
sapiens]
gi|189067937|dbj|BAG37875.1| unnamed protein product [Homo sapiens]
gi|306921323|dbj|BAJ17741.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
gi|325463517|gb|ADZ15529.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [synthetic construct]
gi|410219864|gb|JAA07151.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Pan troglodytes]
gi|410264084|gb|JAA20008.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Pan troglodytes]
gi|410289890|gb|JAA23545.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Pan troglodytes]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|399910751|ref|ZP_10779065.1| ATP-dependent RNA helicase RhlE [Halomonas sp. KM-1]
Length = 439
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F ELGL+AE++ AVE G P+ IQ IPAVL G ++ S+ +G+G+T + LP++Q
Sbjct: 4 FSELGLRAELLSAVEAQGYTTPTPIQLQAIPAVLKGGDLLASAQTGTGKTAGFTLPMLQ- 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA 261
R + P K RA+VL T E A Q G ++ + H
Sbjct: 63 -------------------RLADGPRPGK-RQVRALVLTPTRELAAQVGESVSDYGRHLT 102
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV + D + +L+ATP +L + ++V + +VLDEAD +
Sbjct: 103 -LTSHVIFGGVGQQPQVDAIRPGLDVLVATPGRLLDLQQQKHVDLSRVEILVLDEADRML 161
Query: 322 DRGFGPEISKILNPL 336
D GF +I K+L L
Sbjct: 162 DMGFIHDIKKVLRLL 176
>gi|402873575|ref|XP_003900647.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Papio anubis]
gi|355691902|gb|EHH27087.1| hypothetical protein EGK_17201 [Macaca mulatta]
gi|387542592|gb|AFJ71923.1| putative ATP-dependent RNA helicase DDX41 [Macaca mulatta]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|339503994|ref|YP_004691414.1| ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och 149]
gi|338757987|gb|AEI94451.1| putative ATP-dependent RNA helicase RhlE [Roseobacter litoralis Och
149]
Length = 484
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 34/234 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F EL L +++KA+++ G P+ IQ IP L G+ V+ + +G+G+T ++ LP++
Sbjct: 4 FSELNLNPKVLKAIDEAGYETPTPIQAGAIPPALAGRDVLGIAQTGTGKTASFTLPMIT- 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+L R A M PR++VLC T E A Q + +
Sbjct: 63 -----------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTKHLK 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD + D
Sbjct: 102 LTKALLIGGVSFKEQDKLIDKGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLD 161
Query: 323 RGFGPEISKI--LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374
GF P+I +I L P QT+ +A +A + ++ + ER
Sbjct: 162 MGFIPDIERIFSLTPFTR----------QTLFFSATMAPEIERITNTFLSAPER 205
>gi|73953218|ref|XP_536417.2| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 1
[Canis lupus familiaris]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 378
>gi|281342094|gb|EFB17678.1| hypothetical protein PANDA_018093 [Ailuropoda melanoleuca]
Length = 613
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 171 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 230
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 231 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 273
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 274 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 333
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 334 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 369
>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
gi|224953734|gb|EEG34943.1| DEAD/DEAH box helicase [Eubacterium hallii DSM 3353]
Length = 529
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 99/196 (50%), Gaps = 32/196 (16%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F EL +K E++KAV MG S IQ IP L+GK V+ + +G+G+T A+ +P++Q
Sbjct: 6 FTELDIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIPILQ- 64
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE----SADQGFHMAKFIS 258
++D K P+AIVLC T E AD+ +AK++S
Sbjct: 65 --KVDP----------------------KLKKPQAIVLCPTRELAIQVADEIRKLAKYMS 100
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L + G SK + + A + ++I TP ++ H+ + V D+I VVLDEAD
Sbjct: 101 SVKIL--PIYGGQEISKQIRSLK-AGVQIIIGTPGRMMDHMRRKTVKFDNIHTVVLDEAD 157
Query: 319 TLFDRGFGPEISKILN 334
+ D GF +I ILN
Sbjct: 158 EMLDMGFREDIETILN 173
>gi|149726038|ref|XP_001502240.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Equus
caballus]
Length = 622
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 378
>gi|114564376|ref|YP_751890.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114335669|gb|ABI73051.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 477
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 23/193 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A ++KAVEK G PS IQ IPAVL G+ V+ ++ +G+G+T + LP+++
Sbjct: 2 SFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPILE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S+ + Q+ RA+VL T E A Q
Sbjct: 62 LLSKGERAQRGQV---------------------RALVLTPTRELAAQVQESVATYGVNL 100
Query: 262 RLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GGVS L + N + +L+ATP +L + + +S + +VLDEAD +
Sbjct: 101 PLKSAVVFGGVSIVPQLAALRNG-VDILVATPGRLLDLCQQKAISFSKLEILVLDEADRM 159
Query: 321 FDRGFGPEISKIL 333
D GF +I K+L
Sbjct: 160 LDMGFIRDIKKVL 172
>gi|261820510|ref|YP_003258616.1| ATP-dependent RNA helicase SrmB [Pectobacterium wasabiae WPP163]
gi|261604523|gb|ACX87009.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
gi|385870686|gb|AFI89206.1| ATP-dependent RNA helicase SrmB [Pectobacterium sp. SCC3193]
Length = 441
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q L+ + K PR ++L T E A Q A+ +
Sbjct: 63 LQ-----------HLIDFPR----------KKSGPPRILILTPTRELAMQVADQARAFAA 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGV+ +V + +++AT +LQ+I++ N C + ++LDEAD
Sbjct: 102 HTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 162 MLDMGFAQDIEHI 174
>gi|294055756|ref|YP_003549414.1| DEAD/DEAH box helicase [Coraliomargarita akajimensis DSM 45221]
gi|293615089|gb|ADE55244.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
DSM 45221]
Length = 406
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 119/243 (48%), Gaps = 31/243 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F++LGL ++ AVE+ G P+ IQ IP +++G+ V+ S+ +G+G+T A+ LP
Sbjct: 1 MTTFKDLGLAPAILSAVEEAGYTEPTPIQAGAIPHIIDGRDVIGSAQTGTGKTAAFALPA 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
L +G Q K PR +VL T E A Q +
Sbjct: 61 ------------LHRLGKHQ-----------KGAAPRCLVLGPTRELAAQVKEQFEKYGK 97
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
A+L ++ +GGV A ++IATP ++ H++ R ++ ++LDE D
Sbjct: 98 DAQLKCALIHGGVGYGRQRQELEAGADVVIATPGRLIDHVQQRTADLRNVDLLILDEVDR 157
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS-SLMECLERDNAG 378
+ D GF ++ KI+ + QG QT+L +A ++E + ++ SL + +E A
Sbjct: 158 MLDMGFIDDVKKIIK-------FCSKQGRQTLLFSATVSEEIKRLIARSLKDPVEVAIAV 210
Query: 379 KVT 381
K+T
Sbjct: 211 KIT 213
>gi|410860551|ref|YP_006975785.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii AltDE1]
gi|410817813|gb|AFV84430.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii AltDE1]
Length = 408
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 23/192 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + A MG P+ IQ + IP L+G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 TFEELELDDALCHAAADMGFEAPTNIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
LD P K P R ++L T E A Q + A I+
Sbjct: 62 FL--LD--------------------YPRKQPGATRILILTPTRELALQVYEQAVAITKH 99
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+L + GG++ ++ + + +L+ATP +L+HIE C DI ++LDEAD +
Sbjct: 100 TQLVCGVITGGINYGTDKETLSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRM 159
Query: 321 FDRGFGPEISKI 332
D GF +++I
Sbjct: 160 LDMGFSTVVNQI 171
>gi|242035801|ref|XP_002465295.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
gi|241919149|gb|EER92293.1| hypothetical protein SORBIDRAFT_01g035760 [Sorghum bicolor]
Length = 618
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 114/227 (50%), Gaps = 33/227 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
F++L L M++ + + G+ P+ IQ G+P VL+G+ ++ + +GSG+TL ++LPL+
Sbjct: 174 DFRDLRLPEPMLRKLRERGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIM 233
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH-PRAIVLCTTEESADQGFH-MAKFI-- 257
V Q +E L+P+ P P +++C + E A Q + + +F+
Sbjct: 234 VAVQ------------------EEILMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLIP 275
Query: 258 ---SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ + + GGV + DV + +++ATP + + + ++ D+ RY+ L
Sbjct: 276 LKEAGYPEIRPLLCIGGVDMRTQLDVLKKGVHIVVATPGRLKDLLAKKKMNLDNCRYLTL 335
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
DEAD L D GF +I ++ + KD QT+L +A + + +
Sbjct: 336 DEADRLVDLGFEDDIKEVFDHFKDQR--------QTLLFSATMPQKI 374
>gi|262190914|ref|ZP_06049130.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
gi|297580199|ref|ZP_06942126.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
gi|422920947|ref|ZP_16954205.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae BJG-01]
gi|429885449|ref|ZP_19367038.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
gi|262033210|gb|EEY51732.1| ATP-dependent RNA helicase [Vibrio cholerae CT 5369-93]
gi|297535845|gb|EFH74679.1| ATP-dependent RNA helicase [Vibrio cholerae RC385]
gi|341649742|gb|EGS73692.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae BJG-01]
gi|429227802|gb|EKY33784.1| ATP-dependent RNA helicase [Vibrio cholerae PS15]
Length = 422
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ + +G+G+T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q + I Q +R+ RA+VL T E A Q +
Sbjct: 62 LPLIQRF-------------IEQPWQRE-----TNSKEIRALVLVPTRELAQQVLDSLQA 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L GG S K + + +LIATP +L H +++ + +VLDE
Sbjct: 104 YAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ ++L L
Sbjct: 164 ADRMLDMGFMPDLQRVLRRL 183
>gi|444377668|ref|ZP_21176877.1| ATP-dependent RNA helicase SrmB [Enterovibrio sp. AK16]
gi|443678252|gb|ELT84924.1| ATP-dependent RNA helicase SrmB [Enterovibrio sp. AK16]
Length = 413
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 110/224 (49%), Gaps = 30/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F EL L ++++A++ M P+ IQ IP ++G+ ++ S+ +G+G+T A++LPL
Sbjct: 1 MRTFAELELDPQLLQALDDMSFERPTAIQAGVIPHGMDGRDILASAPTGTGKTAAFVLPL 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q L+ + KP RA++L T E A Q A+ ++
Sbjct: 61 LQ-----------HLIDFPRQ----------KPGPARALILTPTRELAIQVADQARALAK 99
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L GG+S + ++ +++ATP ++++IE C I +VLDEAD
Sbjct: 100 YTDLKIITITGGISYQEHAEILGKTQDIVVATPGRLMEYIEAERFDCRAIESLVLDEADR 159
Query: 320 LFDRGFGPEISKILNPLK--------DSALKSNG-QGFQTILVT 354
+ D GFGP + K+ + + L+ G +GF+ L+T
Sbjct: 160 MLDMGFGPAVDKLSTECRWRKQSMLFSATLEGKGIEGFKNTLLT 203
>gi|330447422|ref|ZP_08311071.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491613|dbj|GAA05568.1| srmB, DEAD-box RNA helicase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 411
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F EL L +E+++A+E++G P+ +Q IP L+GK V+ S+ +G+G+T A+LLP+
Sbjct: 1 MKDFSELELDSELLQAIEEIGYSRPTVVQAQAIPHALDGKDVMASAPTGTGKTAAFLLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q HL R+ KP R +VL T E A Q A+ ++
Sbjct: 61 IQ---------HL-----LDFPRK-------KPGPARVLVLTPTRELAIQVADQARTLAK 99
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L GG+S ++ +++ATP ++++IE C I ++LDEAD
Sbjct: 100 HTMLKVFTITGGISYDEHAELLGKTQDIVVATPGRLMEYIEAEKFDCRAIECLILDEADR 159
Query: 320 LFDRGFGPEISKI 332
+ D GFG + ++
Sbjct: 160 MLDMGFGKVVERL 172
>gi|167892936|ref|ZP_02480338.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
7894]
Length = 416
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|260433500|ref|ZP_05787471.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417328|gb|EEX10587.1| putative ATP-dependent RNA helicase RhlE [Silicibacter
lacuscaerulensis ITI-1157]
Length = 476
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++KA+E+ G P+ IQ IP L G+ V+ + +G+G+T +++LP+
Sbjct: 1 MTKFTDLNLNPKVLKAIEEAGYETPTPIQEGAIPPALEGRDVLGIAQTGTGKTASFVLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L R A M PR++VLC T E A Q +
Sbjct: 61 IT------------------LLARGRARARM----PRSLVLCPTRELAAQVAENFDTYTK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 159 MLDMGFIPDIERIFS 173
>gi|126440586|ref|YP_001057787.1| ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei 668]
gi|126220079|gb|ABN83585.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
668]
Length = 485
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|417411966|gb|JAA52400.1| Putative atp-dependent rna helicase, partial [Desmodus rotundus]
Length = 620
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 178 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 237
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 238 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 280
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 281 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 340
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 341 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 376
>gi|126740399|ref|ZP_01756087.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
gi|126718535|gb|EBA15249.1| ATP-dependent RNA helicase RhlE [Roseobacter sp. SK209-2-6]
Length = 506
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 35/264 (13%)
Query: 113 SPPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI 172
+PP+ + +L++ R S + + F +L L +++KA+ + G P+ IQ I
Sbjct: 9 APPRDSRARLASHTRGRCHSPLKRMHM-TKFTDLNLNPKVLKAIYEAGYETPTPIQAGAI 67
Query: 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232
P L G+ V+ + +G+G+T ++ LP++ +L R A M
Sbjct: 68 PPALEGRDVLGIAQTGTGKTASFTLPMIT------------------LLARGRARARM-- 107
Query: 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATP 292
PR++VLC T E A Q + +L ++ GGVS K + + + + +LIATP
Sbjct: 108 --PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDQLIDKGVDVLIATP 165
Query: 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKI--LNPLKDSALKSNGQGFQT 350
+L H E + ++ +V+DEAD + D GF P+I +I L P QT
Sbjct: 166 GRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR----------QT 215
Query: 351 ILVTAAIAEMLGEQLSSLMECLER 374
+ +A +A + ++ + ER
Sbjct: 216 LFFSATMAPEIERITNTFLSAPER 239
>gi|109079956|ref|XP_001092587.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 isoform 3
[Macaca mulatta]
Length = 622
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|153824344|ref|ZP_01977011.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
MZO-2]
gi|254226198|ref|ZP_04919793.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
V51]
gi|125621300|gb|EAZ49639.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
V51]
gi|149741898|gb|EDM55927.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
MZO-2]
Length = 422
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ + +G+G+T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q + I Q +R+ RA+VL T E A Q +
Sbjct: 62 LPLIQRF-------------IEQPWQRE-----TNSKEIRALVLVPTRELAQQVLDSLQA 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L GG S K + + +LIATP +L H +++ + +VLDE
Sbjct: 104 YAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ ++L L
Sbjct: 164 ADRMLDMGFMPDLQRVLRRL 183
>gi|167561646|ref|ZP_02354562.1| putative ATP-dependent RNA helicase rhlE [Burkholderia oklahomensis
EO147]
Length = 395
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ G + + RA++L T E A Q + S
Sbjct: 62 RLHTFYAENR----GARRAV--------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 511
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A+++KAV G PS IQ IPAVL GK V+ ++ +G+G+T + LPL++
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S+ + Q+ RA+VL T E A Q +
Sbjct: 62 LLSKGTKAPAKQV---------------------RALVLTPTRELAAQVGESVETYGKNL 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV N + +L+ATP +L R +S + +VLDEAD +
Sbjct: 101 PLKSAVVFGGVGIGPQITKLNRGVDILVATPGRLLDLYNQRALSFSQLEVLVLDEADRML 160
Query: 322 DRGFGPEISKIL 333
D GF +I KIL
Sbjct: 161 DMGFIHDIKKIL 172
>gi|395837035|ref|XP_003791451.1| PREDICTED: probable ATP-dependent RNA helicase DDX41-like [Otolemur
garnettii]
Length = 621
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 179 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 238
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 239 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 281
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 282 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 341
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 342 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 377
>gi|392556545|ref|ZP_10303682.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas undina NCIMB
2128]
Length = 408
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDNKLLNAINKMGFETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ RRD P R +++ T E A Q + ++
Sbjct: 63 --------------LMDFPRRD-------PGFARVLIMTPTRELAYQIHEQCELLAKQTH 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ +++ +LIATP +++++E N +++ ++LDEAD + D
Sbjct: 102 LKIGVVTGGINYGTHKEIFENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLD 161
Query: 323 RGFGPEISKILNPLKD 338
GF E+ +I + K+
Sbjct: 162 MGFRKEMLRICDEAKN 177
>gi|14042692|dbj|BAB55355.1| unnamed protein product [Homo sapiens]
Length = 622
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|407776571|ref|ZP_11123844.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
gi|407301862|gb|EKF20981.1| DEAD/DEAH box helicase [Nitratireductor pacificus pht-3B]
Length = 456
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 127/270 (47%), Gaps = 32/270 (11%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+ F ELG+ ++KA G VP IQ IP +L G+ V+ + +GSG+T A+ +P++
Sbjct: 10 TGFAELGISGTLLKAANDAGFTVPKPIQDQAIPPMLEGRDVLGIAQTGSGKTAAFTMPIL 69
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
L T+ LR+ RA++LC T E A Q + + +SH
Sbjct: 70 SKIMALG----------TKRLRKTA----------RALILCPTRELAVQIDEVVRQLSHH 109
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
A L +++ GGVS + + ++IATP + + +S + R++VLDEAD +
Sbjct: 110 AHLSTALVLGGVSRGSQVRRLAQGVDVVIATPGRLTDLVRSGELSLAETRWLVLDEADRM 169
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKV 380
D GF ++ +I ++ QT L +A + + + +SL++ R K
Sbjct: 170 LDMGFINDVRRI--------ARATHADRQTALFSATMPREIEQLAASLLKEPVRVEVAKQ 221
Query: 381 TAMLLEMDQAEVFDLTESQDALKKKVVEAM 410
+ +E+ Q V T+ K+KV+ M
Sbjct: 222 STTAVEITQRLVMARTKQ----KRKVLSDM 247
>gi|332140339|ref|YP_004426077.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550361|gb|AEA97079.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str. 'Deep
ecotype']
Length = 408
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 23/192 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + A MG P+ IQ + IP L+G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 TFEELELDDALCHAAADMGFEAPTNIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
LD P K P R ++L T E A Q + A I+
Sbjct: 62 FL--LD--------------------YPRKQPGATRILILTPTRELALQVYEQAVAITKH 99
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+L + GG++ ++ + + +L+ATP +L+HIE C DI ++LDEAD +
Sbjct: 100 TQLVCGVITGGINYGTDKETLSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRM 159
Query: 321 FDRGFGPEISKI 332
D GF +++I
Sbjct: 160 LDMGFSTVVNQI 171
>gi|78067467|ref|YP_370236.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77968212|gb|ABB09592.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 484
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL ++KAV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
++ G + + RA++L T E A Q + S
Sbjct: 62 RLHTFYADNR----GAKRAV--------------RALILTPTRELAAQVEESVRAYSKYL 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + ++ +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|312379831|gb|EFR25992.1| hypothetical protein AND_08228 [Anopheles darlingi]
Length = 803
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 29/219 (13%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL A ++K + KMG VP+ IQ IP +++G+ VV + +GSG+T ++L+P+ +
Sbjct: 39 FQAMGLSAPVLKGILKMGYKVPTPIQRKTIPIIMDGRDVVAMAKTGSGKTGSFLIPMFE- 97
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
LR+ EA RA++L T E A Q F K +
Sbjct: 98 -----------------KLRQREA---KAGGGARALILSPTRELAIQTFRFIKQLGRFMD 137
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + + GG S A + +++ATP L + ++ ++Y VLDEAD LF+
Sbjct: 138 LKTILVLGGDSMDAQFAAVHTLPDIIVATPGRFLHLCVEMDLKLGSVQYCVLDEADRLFE 197
Query: 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
GFG ++S L L ++ Q +L +A + +M+
Sbjct: 198 MGFGEQLSDTLKRLPEAR--------QMVLFSATLPKMM 228
>gi|153800715|ref|ZP_01955301.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
gi|227812335|ref|YP_002812345.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
gi|229522328|ref|ZP_04411744.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|298499563|ref|ZP_07009369.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
gi|417823355|ref|ZP_12469953.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE48]
gi|419836503|ref|ZP_14359943.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46B1]
gi|421343079|ref|ZP_15793483.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43B1]
gi|422306779|ref|ZP_16393951.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1035(8)]
gi|423734981|ref|ZP_17708192.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41B1]
gi|424009367|ref|ZP_17752307.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-44C1]
gi|124123690|gb|EAY42433.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae MZO-3]
gi|227011477|gb|ACP07688.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae M66-2]
gi|229340313|gb|EEO05319.1| ATP-dependent RNA helicase [Vibrio cholerae TM 11079-80]
gi|297541544|gb|EFH77595.1| ATP-dependent RNA helicase [Vibrio cholerae MAK 757]
gi|340049485|gb|EGR10401.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE48]
gi|395941646|gb|EJH52323.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43B1]
gi|408625435|gb|EKK98344.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1035(8)]
gi|408630434|gb|EKL03031.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-41B1]
gi|408857053|gb|EKL96741.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-46B1]
gi|408864391|gb|EKM03834.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-44C1]
Length = 422
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ + +G+G+T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q + I Q +R+ RA+VL T E A Q +
Sbjct: 62 LPLIQRF-------------IEQPWQREA-----NSKEIRALVLVPTRELAQQVLDSLQA 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L GG S K + + +LIATP +L H +++ + +VLDE
Sbjct: 104 YAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ ++L L
Sbjct: 164 ADRMLDMGFMPDLQRVLRRL 183
>gi|452751054|ref|ZP_21950800.1| ATP-dependent RNA helicase [alpha proteobacterium JLT2015]
gi|451961204|gb|EMD83614.1| ATP-dependent RNA helicase [alpha proteobacterium JLT2015]
Length = 481
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 30/216 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL E++ AV G P++IQ IP VL GK VV + +G+G+T +++LP++
Sbjct: 14 SFHQLGLSDELLGAVADSGYSDPTDIQRQAIPLVLMGKDVVGVAQTGTGKTASFVLPMID 73
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ SQ + PR++++ T E ADQ + +
Sbjct: 74 ILSQGRSRARM----------------------PRSLIIAPTRELADQVAQNFEKYGKNS 111
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L ++ GGVS + + +LIATP +L E + + +V+DEAD +
Sbjct: 112 KLSMALLIGGVSFGDQDKALAKGVDVLIATPGRLLDQFERGKILLSGVDILVIDEADRML 171
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
D GF P++ +I L G+ QT+L +A +
Sbjct: 172 DMGFIPDVERICGLL--------GRNRQTLLFSATM 199
>gi|451936623|ref|YP_007460477.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777546|gb|AGF48521.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 447
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 105/197 (53%), Gaps = 17/197 (8%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF GL ++ + ++G P+ IQ IP +L G + ++ +G+G+T A++LP+
Sbjct: 13 LNSFSSFGLDDSILSVLNEIGYIKPTLIQESAIPNILEGFDFIGAAQTGTGKTAAFILPI 72
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ +L+ + ++ P + + R+++L T E ADQ + K S
Sbjct: 73 IN-----------KLIPFA-----NNSVSPARHL-LRSLILVPTRELADQVYECIKLYSK 115
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L S + GGV + +D+ + +L+ATP ++ HI +N+S ++ +VLDEAD
Sbjct: 116 NTKLRSLVLFGGVDLEQQKDLLHKGCEILVATPGRLIAHINQKNISLINVDTLVLDEADR 175
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF P++ +I+ L
Sbjct: 176 MLDMGFIPDVDRIVGML 192
>gi|167909652|ref|ZP_02496743.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
112]
Length = 419
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|167737241|ref|ZP_02410015.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
14]
gi|167822848|ref|ZP_02454319.1| putative ATP-dependent RNA helicase rhlE [Burkholderia pseudomallei
9]
Length = 414
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|167568882|ref|ZP_02361756.1| ATP-dependent RNA helicase RhlE [Burkholderia oklahomensis C6786]
Length = 408
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ G + + RA++L T E A Q + S
Sbjct: 62 RLHTFYAENR----GARRAV--------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|410662750|ref|YP_006915121.1| ATP-dependent RNA helicase [Simiduia agarivorans SA1 = DSM 21679]
gi|409025107|gb|AFU97391.1| ATP-dependent RNA helicase [Simiduia agarivorans SA1 = DSM 21679]
Length = 456
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 36/221 (16%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F ELGL +IKA++ + P+++Q IPA L GK +++ S +GSG+TLA+LLPL Q
Sbjct: 2 FTELGLDERLIKALDAQSITDPTQVQNAAIPAALAGKDLLVMSETGSGKTLAFLLPLAQ- 60
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++L D + A++L T E A Q AK
Sbjct: 61 ----------------KLLNNDN-----RNTGTLALILAPTRELAKQILKEAKAALKFTH 99
Query: 263 LDSSMENGGVSSK--ALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADT 319
L + +GG K A + N I LIATP +L+H +RN+ + DD++ ++LDEAD
Sbjct: 100 LKVGIVSGGDDYKFQAAQLRKNPEI--LIATPGRLLEHF-NRNLPAMDDLQVLILDEADR 156
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360
+ D GF ++ I N L +A +S T L +A ++ M
Sbjct: 157 MLDMGFHDDMVSICNKL--AATRS------TWLFSATLSHM 189
>gi|332029665|gb|EGI69554.1| Putative ATP-dependent RNA helicase DDX17 [Acromyrmex echinatior]
Length = 595
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 22/199 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP- 198
V F E G +++ +++ G P+ IQ G P L+G+ +V + +GSG+TL+Y+LP
Sbjct: 128 VFDFDEAGFPDYVLREIKRQGFSEPTSIQAQGWPIALSGRDMVGIASTGSGKTLSYILPA 187
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+V + SQ ++ R+D P A+VL T E A Q +A
Sbjct: 188 IVHINSQ------------PKLSRKD---------GPIALVLAPTRELAQQIQQVADDFG 226
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
H + + ++ GG A + + ++IATP +L +E + Y+VLDEAD
Sbjct: 227 HSSGIRNTCLYGGAPKGAQARDLDGGVEIVIATPGRLLDFLESGKTNLKRCTYLVLDEAD 286
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF P+I KI+ ++
Sbjct: 287 RMLDMGFEPQIRKIIEQIR 305
>gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
Length = 441
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 23/197 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
VSSF +LGL +++A+++ G P+ IQ IP VL G ++ ++ +G+G+T + LP+
Sbjct: 4 VSSFADLGLAESLLRALDQAGYKTPTPIQAQAIPEVLKGGDLLAAAQTGTGKTAGFTLPI 63
Query: 200 VQ--VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
+Q Q E KP PRA++L T E A Q +
Sbjct: 64 LQRLTTGQTPER---------------------KPGRPRALILTPTRELAAQVHDSVRTY 102
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
L S GGV+ P+ +++ATP +L H + + + +VLDEA
Sbjct: 103 GRHLSLKSMTIFGGVNMNPQIKALRGPMDIVVATPGRLLDHAGQKTIDLSGVEILVLDEA 162
Query: 318 DTLFDRGFGPEISKILN 334
D + D GF +I +++
Sbjct: 163 DRMLDMGFIRDIRRLIG 179
>gi|195480298|ref|XP_002101215.1| GE17497 [Drosophila yakuba]
gi|194188739|gb|EDX02323.1| GE17497 [Drosophila yakuba]
Length = 962
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 24/219 (10%)
Query: 119 QQQLSNIASEREKSSGSN--AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL 176
+QQ+++I E E + N V SF+E L A +I+ +++ G P+ IQ G P L
Sbjct: 215 EQQVADIRRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIAL 274
Query: 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPR 236
+G+ +V + +GSG+TLAY+LP + V+ +G + R E P
Sbjct: 275 SGRDLVGIAQTGSGKTLAYMLPAI-VH-----------IGNQPPILRGEG--------PI 314
Query: 237 AIVLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
A+VL T E A Q + + H + + + GG S + + ++IATP
Sbjct: 315 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGR 374
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
++ +E+RN + Y+VLDEAD + D GF P+I KI+
Sbjct: 375 LIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKII 413
>gi|118359808|ref|XP_001013142.1| CLN3 protein [Tetrahymena thermophila]
gi|89294909|gb|EAR92897.1| CLN3 protein [Tetrahymena thermophila SB210]
Length = 1138
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 119/254 (46%), Gaps = 30/254 (11%)
Query: 106 NNPENKPSPPQPEQQQLSNIASERE-KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFV 163
N + P + +QQ+ I E E K SG + + SF LG E+++ + K+G
Sbjct: 25 NFYQEHPDITKLTEQQVEKIRKEFEIKVSGVRPPKPIVSFGHLGFDEELMRQITKLGFEK 84
Query: 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRR 223
P++IQC +P L+G+ +V + +GSG+T++YL PL + LD+ L +
Sbjct: 85 PTQIQCQALPCGLSGRDIVGVAKTGSGKTVSYLWPL--LIHILDQRE----------LEK 132
Query: 224 DEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNA 283
+E P ++L T E Q + +K + + GG + + A
Sbjct: 133 NEG--------PIGLILAPTRELCQQVYTESKRYAKIYNISVGALLGGENKHEQWKMLKA 184
Query: 284 PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 343
+ +LIATP +++ I+ + + YVV+DEAD +F GF +I I+ ++
Sbjct: 185 GVEILIATPGRLMEMIQKKATNLRRCTYVVIDEADKMFSMGFEKQIRSIMQQIRPDR--- 241
Query: 344 NGQGFQTILVTAAI 357
QT+L TA +
Sbjct: 242 -----QTLLFTATL 250
>gi|50122209|ref|YP_051376.1| ATP-dependent RNA helicase SrmB [Pectobacterium atrosepticum
SCRI1043]
gi|49612735|emb|CAG76185.1| ATP-dependent RNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 441
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTAIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q L+ + K PR ++L T E A Q A+ +
Sbjct: 63 LQ-----------HLIDFPR----------KKSGPPRVLILTPTRELAMQVADQARAFAA 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGV+ +V + +++AT ++Q+I++ N C + ++LDEAD
Sbjct: 102 HTHLDIATITGGVAYMNHAEVFSENQDVVVATTGRLMQYIKEENFDCRAVETLILDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 162 MLDMGFAQDIEHI 174
>gi|423199692|ref|ZP_17186275.1| hypothetical protein HMPREF1171_04307 [Aeromonas hydrophila SSU]
gi|404628948|gb|EKB25713.1| hypothetical protein HMPREF1171_04307 [Aeromonas hydrophila SSU]
Length = 415
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 24/196 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++SF +L L + + + ++G P+ +Q IP +L G+ ++ + +G+G+T A++LPL
Sbjct: 3 IASFADLALSPRLQQTLTELGYAAPTPVQAGAIPLILAGRDLMAGAQTGTGKTAAFVLPL 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRR--DEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
++ Q+L+ +AL P+ RA+VL T E A Q
Sbjct: 63 LE-----------------QLLQHPASDALRPI-----RALVLVPTRELAVQVHESVTRY 100
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
+ L S++ GGVS A + A + +LIATP +L H+ +S +R++V DEA
Sbjct: 101 AKGIDLTSTLVYGGVSIAAQVEALKAGVDLLIATPGRLLDHLRQGALSLAALRHLVFDEA 160
Query: 318 DTLFDRGFGPEISKIL 333
D + D GF EI +L
Sbjct: 161 DRMLDMGFMDEIKALL 176
>gi|393764218|ref|ZP_10352830.1| ATP-dependent RNA helicase SrmB [Alishewanella agri BL06]
gi|397170927|ref|ZP_10494337.1| ATP-dependent RNA helicase SrmB [Alishewanella aestuarii B11]
gi|392604848|gb|EIW87747.1| ATP-dependent RNA helicase SrmB [Alishewanella agri BL06]
gi|396087401|gb|EJI85001.1| ATP-dependent RNA helicase SrmB [Alishewanella aestuarii B11]
Length = 406
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF E L + +A+E G P++IQ + IP L G+ ++ S+ +G+G+TLA++LP +Q
Sbjct: 2 SFAEFQLDDALNQALESAGFDQPTQIQQLAIPPALEGRDLLASAPTGTGKTLAFVLPAIQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ RRD P R +V+ T E A Q + K S
Sbjct: 62 Y--------------LLDFPRRD-------PGFARVLVMTPTRELAYQVYDTFKQFSQFT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L+ + GG++ + +D +L+ATP ++++++ + D++ ++LDEAD +
Sbjct: 101 TLNVGLITGGINYGSHKDTLEKNNDILVATPGRLIEYLDAESFQADEVELLILDEADRML 160
Query: 322 DRGFGPEISKIL 333
D GF E+++I+
Sbjct: 161 DMGFIGEMNRIV 172
>gi|90075638|dbj|BAE87499.1| unnamed protein product [Macaca fascicularis]
Length = 457
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 180 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 239
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 240 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 282
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 283 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 342
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 343 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 378
>gi|375109359|ref|ZP_09755608.1| ATP-dependent RNA helicase SrmB [Alishewanella jeotgali KCTC 22429]
gi|374570663|gb|EHR41797.1| ATP-dependent RNA helicase SrmB [Alishewanella jeotgali KCTC 22429]
Length = 406
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF E L + +A+E G P++IQ + IP L G+ ++ S+ +G+G+TLA++LP +Q
Sbjct: 2 SFAEFQLDDALNQALESAGFDQPTQIQQLAIPPALEGRDLLASAPTGTGKTLAFVLPAIQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ RRD P R +V+ T E A Q + K S
Sbjct: 62 Y--------------LLDFPRRD-------PGFARVLVMTPTRELAYQVYDTFKQFSQFT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L+ + GG++ + +D +L+ATP ++++++ + D++ ++LDEAD +
Sbjct: 101 TLNVGLITGGINYGSHKDTLEKNNDILVATPGRLIEYLDAESFQADEVELLILDEADRML 160
Query: 322 DRGFGPEISKIL 333
D GF E+++I+
Sbjct: 161 DMGFIGEMNRIV 172
>gi|288942468|ref|YP_003444708.1| DEAD/DEAH box helicase domain-containing protein [Allochromatium
vinosum DSM 180]
gi|288897840|gb|ADC63676.1| DEAD/DEAH box helicase domain protein [Allochromatium vinosum DSM
180]
Length = 438
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 96/196 (48%), Gaps = 24/196 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL AE+++A+ G P+ IQ IPAVL + V+ ++ +G+G+T A+ LP++
Sbjct: 2 SFSALGLSAELLRAIAAQGYTQPTPIQSKAIPAVLARRDVLAAAQTGTGKTAAFTLPMLH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHC 260
+ SQ + R A PRA+VL T E A Q G ++ + H
Sbjct: 62 LLSQSTQ--------------RQRA--------PRALVLTPTRELAAQVGESVSTYGQHL 99
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L + GGV + +L+ATP +L H+ +V I + VLDEAD +
Sbjct: 100 P-LRALQIFGGVGMVPQTTALRRGVDILVATPGRLLDHVGQGHVDLSKIEFFVLDEADRM 158
Query: 321 FDRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 159 LDMGFIHDIRRVLKLL 174
>gi|432104108|gb|ELK30938.1| Putative ATP-dependent RNA helicase DDX41 [Myotis davidii]
Length = 657
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 215 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 274
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 275 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 317
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 318 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 377
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 378 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 413
>gi|224370360|ref|YP_002604524.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
HRM2]
gi|223693077|gb|ACN16360.1| putative helicase of superfamily II [Desulfobacterium autotrophicum
HRM2]
Length = 402
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 22/195 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ GL+AE+++AV G P+ IQ IP VL G+ V+ + +G+G+T A+ LP+++
Sbjct: 2 SFEIFGLRAELLRAVAAEGYKEPTPIQDQAIPVVLRGEDVLAGAQTGTGKTAAFALPILE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S+ + + PR +VL T E A Q + +
Sbjct: 62 MLSKTSKRTYT----------------------PRCLVLAPTRELAAQVQASFESLGRSL 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV + D + +L+ATP +L H R + + +VLDEAD +
Sbjct: 100 HLRSTVVFGGVGIQPQIDKLKKGVDILVATPGRLLDHAGRRTLDLSKVEILVLDEADRML 159
Query: 322 DRGFGPEISKILNPL 336
D GF +I K+L L
Sbjct: 160 DMGFIHDIKKVLKLL 174
>gi|153830439|ref|ZP_01983106.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
623-39]
gi|229514213|ref|ZP_04403674.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
gi|254285788|ref|ZP_04960751.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
AM-19226]
gi|384423066|ref|YP_005632425.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3984-4]
gi|421349305|ref|ZP_15799674.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-25]
gi|421355813|ref|ZP_15806144.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-45]
gi|424589155|ref|ZP_18028621.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1037(10)]
gi|148874080|gb|EDL72215.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
623-39]
gi|150424285|gb|EDN16223.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
AM-19226]
gi|229348193|gb|EEO13151.1| ATP-dependent RNA helicase [Vibrio cholerae TMA 21]
gi|327485774|gb|AEA80180.1| ATP-dependent RNA helicase VCA0768 [Vibrio cholerae LMA3984-4]
gi|395950483|gb|EJH61102.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-45]
gi|395955922|gb|EJH66516.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-25]
gi|408038333|gb|EKG74682.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1037(10)]
Length = 422
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ + +G+G+T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q + I Q +R+ RA+VL T E A Q +
Sbjct: 62 LPLIQRF-------------IEQPWQREA-----NSKEIRALVLVPTRELAQQVLDSLQA 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L GG S K + + +LIATP +L H +++ + +VLDE
Sbjct: 104 YAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ ++L L
Sbjct: 164 ADRMLDMGFMPDLQRVLRRL 183
>gi|145348205|ref|XP_001418546.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578775|gb|ABO96839.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 546
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 34/223 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ + + ++ +AV++ G VP+ IQ IP L G+ VV + +GSG+T A+L+P V
Sbjct: 87 FESMDILPDVFRAVKRKGYRVPTPIQRKAIPPALEGRDVVAMARTGSGKTAAFLIP---V 143
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
S+L H L+ R ++L T E A Q F AK ++
Sbjct: 144 LSKL-RTHSLK-------------------AGARCVILAPTRELALQTFKFAKELAKFTD 183
Query: 263 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTL 320
L + GG S +A D+SN P +++ATP +L HI++ + + + +VVLDEAD L
Sbjct: 184 LRVAALVGGDSMEAQFADLSNNP-DVIVATPGRLLHHIDEVKAFTLRTVCHVVLDEADRL 242
Query: 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
+ GF ++ +I+N + D QT+L +A + L E
Sbjct: 243 LEMGFADQLKQIMNSVADVR--------QTLLFSATLPSALAE 277
>gi|345867959|ref|ZP_08819956.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
gi|344047610|gb|EGV43237.1| ATP-dependent RNA helicase rhlE [Bizionia argentinensis JUB59]
Length = 427
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 94/192 (48%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++LGL ++KAV K G PS IQ IP VL G+ V+ S+ +G+G+T + LPL+Q
Sbjct: 2 TFKQLGLSDALLKAVSKQGYEKPSPIQQKAIPPVLEGRDVLASAQTGTGKTAGFTLPLLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ SQ + +P+ RA++L T E A Q + S
Sbjct: 62 ILSQTETSRQ-------------------RPI--RALILTPTRELAAQVHENVRQYSEFT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV+ K N + +L+ATP +L + I +VLDEAD +
Sbjct: 101 DLRSLVIFGGVNQKPQVAALNRGVDVLVATPGRLLDLQNQGAICLRKIEILVLDEADRML 160
Query: 322 DRGFGPEISKIL 333
D GF +I +I+
Sbjct: 161 DMGFLRDIERIM 172
>gi|403059557|ref|YP_006647774.1| ATP-dependent RNA helicase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402806883|gb|AFR04521.1| ATP-dependent RNA helicase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 441
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q L+ + K PR ++L T E A Q A+ +
Sbjct: 63 LQ-----------HLIDFPR----------KKSGPPRILILTPTRELAMQVADQARAFAA 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGV+ +V + +++AT +LQ+I++ N C + ++LDEAD
Sbjct: 102 HTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 162 MLDMGFAQDIEHI 174
>gi|340723049|ref|XP_003399911.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Bombus terrestris]
Length = 772
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 38/244 (15%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E +++NI + K SG FQ + L ++K + + G +P+ IQ IP L
Sbjct: 20 EDNEINNIKKKVCKKSGG-------FQSMALSFPLLKGILRRGYKIPTPIQRKTIPLALE 72
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237
G+ VV + +GSG+T +L+PL + RR +A RA
Sbjct: 73 GRDVVAMARTGSGKTACFLIPLFEKLKT----------------RRAKA-------GARA 109
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297
++L T E A Q K + L +++ GG S + + +L+ATP L
Sbjct: 110 LILSPTRELALQTLKFIKELGKFTDLKAAVILGGDSMENQFSAIHGNPDILVATPGRFLH 169
Query: 298 HIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+ ++ ++I YVV DEAD LF+ GFG +I++I N L +S QT+L +A +
Sbjct: 170 ICIEMDLQLNNIEYVVFDEADRLFEMGFGEQITEITNRLPESR--------QTLLFSATL 221
Query: 358 AEML 361
++L
Sbjct: 222 PKLL 225
>gi|167617991|ref|ZP_02386622.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
Length = 435
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ G + + RA++L T E A Q + S
Sbjct: 62 RLHAFYAENR----GARRAV--------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSTVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|24372719|ref|NP_716761.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
gi|24346781|gb|AAN54206.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
Length = 447
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 29/225 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F ELGL A + KA+ L P+ +Q + IPA+L G+ ++ S +GSG+T A+ LPL+Q
Sbjct: 18 TFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQ 76
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ---GFH-MAKFI 257
+ Q + + + A P+ A+VL T E A Q H +A +
Sbjct: 77 IL--------WQQIAVQTTAKSVPAAKPL------ALVLVPTRELALQVSEALHALASQL 122
Query: 258 SHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
S A L+ + GGV+ + L D+S P +++ATP +L ++S D I+++VLDE
Sbjct: 123 STSAPLNIQLLCGGVALEQQLADLSAKP-QLVVATPGRLLDLCTQSHISLDAIKHLVLDE 181
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
AD L + GF P++ K++ + QT+L +A + E L
Sbjct: 182 ADRLLEMGFWPDMQKLMAMMPKRK--------QTLLFSATLPEAL 218
>gi|410462897|ref|ZP_11316448.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409983996|gb|EKO40334.1| DNA/RNA helicase, superfamily II [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 501
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 34/229 (14%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF L +I +++ G P+ IQ +P V+ G+ ++ + +G+G+T A+LLP++
Sbjct: 2 SFDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGRDLMGLAQTGTGKTAAFLLPIL- 60
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H L P + PR ++L T E A+Q F
Sbjct: 61 --------HRLLTT-------------PARTRSPRTLILAPTRELAEQIFRSTLDFMRGT 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
RL +++ GGV + +++A P +L H+ NV D + +VLDEAD +F
Sbjct: 100 RLRATVIYGGVGMFPQVRALRQGVDVIVACPGRLLDHLNQGNVRFDGLETLVLDEADHMF 159
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTA----AIAEMLGEQLS 366
D GF P+I +IL +AL + QT+L +A AI+ + GE L+
Sbjct: 160 DMGFLPDIKRIL-----AALPAK---RQTLLFSATMPPAISGLAGETLT 200
>gi|334311247|ref|XP_001381058.2| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Monodelphis
domestica]
Length = 617
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 175 LKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 234
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 235 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 277
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 278 LLQEDSSPPLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 337
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 338 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 373
>gi|227112916|ref|ZP_03826572.1| ATP-dependent RNA helicase SrmB [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 441
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 21/193 (10%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L ++ A+ MG P+ IQ IP + G+ V+ S+ +G+G+T AYLLP+
Sbjct: 3 VTNFSELDLDESLLDALRDMGYERPTVIQAEAIPPAMEGRDVLGSAPTGTGKTAAYLLPV 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+Q L+ + K PR ++L T E A Q A+ +
Sbjct: 63 LQ-----------HLIDFPR----------KKSGPPRILILTPTRELAMQVADQARAFAA 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
LD + GGV+ +V + +++AT +LQ+I++ N C + ++LDEAD
Sbjct: 102 HTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADR 161
Query: 320 LFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 162 MLDMGFAQDIEHI 174
>gi|407686654|ref|YP_006801827.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407290034|gb|AFT94346.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 408
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + A MG P+ IQ + IP L+G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 TFEELELDEALCHAAADMGFETPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ RR +P R ++L T E A Q + A I+
Sbjct: 62 F--------------LLDYPRR-------QPGATRILILTPTRELALQVYEQALAITKHT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
++ + GG++ ++ + + +L+ATP +L+HIE C DI ++LDEAD +
Sbjct: 101 QIVCGVITGGINYGTDKETLSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRML 160
Query: 322 DRGFGPEISKI 332
D GF +++I
Sbjct: 161 DMGFSTVVNQI 171
>gi|229815663|ref|ZP_04445989.1| hypothetical protein COLINT_02713, partial [Collinsella
intestinalis DSM 13280]
gi|229808727|gb|EEP44503.1| hypothetical protein COLINT_02713 [Collinsella intestinalis DSM
13280]
Length = 293
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 129/285 (45%), Gaps = 41/285 (14%)
Query: 123 SNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVV 182
+N+ SSG+ A SF +LGL E++ AV MG P+ +Q IP L+G+ V+
Sbjct: 17 TNVTEFDTTSSGAPAP---SFADLGLSEEVLSAVADMGYTAPTPVQAASIPHALDGEDVL 73
Query: 183 LSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242
++ +G+G+T A+LLP ++ H+ R A + P +V+
Sbjct: 74 AAAQTGTGKTAAFLLP------TMNNLPHVP---------RSRARGRVAAQGPLMLVVTP 118
Query: 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
T E A Q + + I+ S GGVS D +LIATP + I+
Sbjct: 119 TRELAQQIEEVCRAIARRTGHTSVTVVGGVSYNPQRDKLKRGCDILIATPGRLQDLIDQG 178
Query: 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362
S D ++ +VLDEAD + D GF P + +I++ +D QT+L +A
Sbjct: 179 ACSLDQVQVLVLDEADRMLDMGFLPAVRRIVSYTRDDR--------QTLLFSAT------ 224
Query: 363 EQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVV 407
L+ G +T ++ + + E+ +T + D +++ V+
Sbjct: 225 ---------LDEQAVGSITDLVTDPARVEIAPVTSTADTVEQYVL 260
>gi|407715860|ref|YP_006837140.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
gi|407256196|gb|AFT66637.1| ATP-dependent RNA helicase RhlE [Cycloclasticus sp. P1]
Length = 442
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 27/229 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL+AE+I AV K G P+ IQ IP +L G+ ++ + +G+G+T ++ LP++Q
Sbjct: 2 SFDSLGLRAELITAVSKKGYTEPTSIQAQSIPLILEGRDLMGGAQTGTGKTASFTLPVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+++ +A K RA+VL T E A Q +
Sbjct: 62 -----------------RLMESGDA--KPKAGKVRALVLTPTRELAAQVAESVRDYGQHL 102
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S + GGV+ + + +L+ATP +L H+ V + +VLDEAD +
Sbjct: 103 PLSSFVIFGGVNINPQKQKLRKGVDILVATPGRLLDHVSQNTVDLSSVEILVLDEADRML 162
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
D GF +I K+L L Q QT+L +A + + + SSL+
Sbjct: 163 DMGFIRDIRKVLALLP--------QQKQTLLFSATFSNEIKKLTSSLLH 203
>gi|408489495|ref|YP_006865864.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
gi|408466770|gb|AFU67114.1| ATP-dependent RNA helicase RhlE [Psychroflexus torquis ATCC 700755]
Length = 423
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 92/191 (48%), Gaps = 21/191 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ LGL ++KAV G P+ IQ IPAVL GK V+ S+ +G+G+T + LPL+Q+
Sbjct: 3 FKSLGLSEALVKAVSSQGYDTPTPIQEKSIPAVLEGKDVLASAQTGTGKTAGFTLPLLQL 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
SQ P++ RA++L T E A Q K
Sbjct: 63 LSQTP---------------------PLRNRPVRALILTPTRELAAQVHQSVKDYGKFVD 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L S++ GGV+ K+ + +L+ATP ++ +S + +VLDEAD + D
Sbjct: 102 LRSTVIFGGVNQKSQVSTLRNGVDVLVATPGRLIDLNNQGLLSLAKVEILVLDEADRMLD 161
Query: 323 RGFGPEISKIL 333
GF +I KI+
Sbjct: 162 MGFLRDIKKIM 172
>gi|255571988|ref|XP_002526935.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223533687|gb|EEF35422.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 603
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 22/209 (10%)
Query: 142 SFQELGLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
SF LGL + + E+MG P+ +Q IP VL+G+ V++++ +G+G+T+AYL P++
Sbjct: 32 SFLNLGLHPTLCDQLRERMGFEAPTTVQAQAIPVVLSGRHVLVNAATGTGKTVAYLAPII 91
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
HHLQ + + R A+VL T E Q + + + + H
Sbjct: 92 ---------HHLQ--SYSPRIERAHGTF--------ALVLVPTRELCLQVYEILQGLLHR 132
Query: 261 ARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEAD 318
G S++ E I +L+ATP +L H+++ + S ++R+++ DEAD
Sbjct: 133 FHWIVPGYIMGGESRSKEKARLRKGISILVATPGRLLDHLKNTSSFSHTNLRWIIFDEAD 192
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQG 347
+ + GFG EI IL+ L +S G+G
Sbjct: 193 RILELGFGKEIEDILDLLGSRLTRSVGKG 221
>gi|254468401|ref|ZP_05081807.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
gi|207087211|gb|EDZ64494.1| dead/deah box helicase domain protein [beta proteobacterium KB13]
Length = 444
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 30/234 (12%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF G + KA+ ++ P+ IQ IP VL+GK V+ S+ +G+G+T A+ LPL+
Sbjct: 2 SFSNFGFIPPIGKAISRINYSTPTPIQEQCIPVVLSGKDVLASAQTGTGKTAAFCLPLLN 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ + + H + + P ++L T E A Q K SH
Sbjct: 62 LVEKKPKHKH------------------KRNISPDVLILSPTRELATQIEQELKRFSHFM 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ GGVS K + + + L+ATP ++ ++ R ++ I +V+DEAD +
Sbjct: 104 DTNIVSVVGGVSYKLQNKLLKSNVNFLVATPGRLMDLVKQRKINLKHIDALVIDEADRML 163
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375
D GF P+I KI +S Q Q ++ TA L +Q+ + + +D
Sbjct: 164 DMGFIPDIKKI--------FESTSQDQQVLMFTAT----LNKQIEKIAQQFLKD 205
>gi|422910220|ref|ZP_16944861.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-09]
gi|424659088|ref|ZP_18096339.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-16]
gi|341633724|gb|EGS58513.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-09]
gi|408053273|gb|EKG88291.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HE-16]
Length = 422
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ + +G+G+T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q + I Q +R+ RA+VL T E A Q +
Sbjct: 62 LPLIQRF-------------IEQPWQREA-----NSKEIRALVLVPTRELAQQVLDSLQA 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L GG S K + + +LIATP +L H +++ + +VLDE
Sbjct: 104 YAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ ++L L
Sbjct: 164 ADRMLDMGFMPDLQRVLRRL 183
>gi|194440585|dbj|BAG65665.1| vasa [Gryllus bimaculatus]
Length = 650
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 17/205 (8%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGS 189
K SG N + F+ GL+ ++ ++K G P+ IQ IP +++G+ ++ + +GS
Sbjct: 203 KVSGENVPRAIDRFENSGLRQFVLDNIKKSGYAKPTPIQKHAIPIIMSGRDLMACAQTGS 262
Query: 190 GRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
G+T A+LLP++ V L + L +L + P AI++ T E Q
Sbjct: 263 GKTAAFLLPIINVL--LSDPRDL--------------ILTAEHCEPHAIIVSPTRELTLQ 306
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
+ A+ +H + + + + GG ++ +L+ATP +L + +S +
Sbjct: 307 IYSEARKFAHGSIIKAVVTYGGTAAYHQAQQVMKGCHILVATPGRLLDFVNRGRISFASV 366
Query: 310 RYVVLDEADTLFDRGFGPEISKILN 334
R+VVLDEAD + D GF P+I K++N
Sbjct: 367 RFVVLDEADRMLDMGFMPDIEKMMN 391
>gi|145473681|ref|XP_001462504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124430344|emb|CAK95131.1| unnamed protein product [Paramecium tetraurelia]
Length = 706
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 109/220 (49%), Gaps = 33/220 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ +GL E+ +A++ G VP+ IQ IP +L G+ +V S +GSG+T A+L+PL+
Sbjct: 12 FESMGLIPELYRAIKSQGFNVPTPIQRKAIPQILAGRDIVACSKTGSGKTAAFLIPLINK 71
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
++H +VGI R ++L T E A Q + K + +
Sbjct: 72 L-----QNHSTVVGI------------------RGLILLPTRELALQIASVLKALLKFSD 108
Query: 263 LDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ S+ GG + E +++ P +LI TP VLQH+ + + ++ V+ DEAD LF
Sbjct: 109 IQYSIMVGGHGFEGQFESLASNP-DILICTPGRVLQHLLEDRLKLSRVQMVIYDEADFLF 167
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+ G ++ +IL+ L Q+++ +A I E L
Sbjct: 168 EMGLADQLKQILSHLPSQK--------QSLMFSATIPEQL 199
>gi|307214987|gb|EFN89832.1| Probable ATP-dependent RNA helicase DDX27 [Harpegnathos saltator]
Length = 734
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 34/228 (14%)
Query: 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194
+N E ++F ++ L ++KA+ M P+ IQ IP L G+ + + +G+G+T A
Sbjct: 149 TNFETDATFYQMNLSRPLLKAITTMNFLTPTPIQAATIPVALMGRDICGCAATGTGKTAA 208
Query: 195 YLLPLVQ--VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 252
Y+LP ++ +Y LD P R +VL T E Q +
Sbjct: 209 YMLPTLERLMYKPLD-----------------------GPAVTRVLVLVPTRELGVQVYQ 245
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRY 311
+ K +S +++ + GG+ K E + ++IATP ++ H+ + S D I
Sbjct: 246 VTKQLSQFTSVETGLSVGGLDVKVQESILRRNPDIVIATPGRLIDHLRNTPTFSLDIIEV 305
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
++LDEAD + D F ++ I+N S QT+L +A + E
Sbjct: 306 LILDEADRMLDEYFAEQMKYIVNQCSRSR--------QTMLFSATMTE 345
>gi|119605383|gb|EAW84977.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
sapiens]
gi|119605386|gb|EAW84980.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 41, isoform CRA_a [Homo
sapiens]
gi|193787208|dbj|BAG52414.1| unnamed protein product [Homo sapiens]
Length = 496
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 54 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 113
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 114 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 156
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 157 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 216
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 217 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 252
>gi|315127597|ref|YP_004069600.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
gi|315016111|gb|ADT69449.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. SM9913]
Length = 408
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDDKLLNAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ RRD P R +++ T E A Q + ++ +
Sbjct: 63 --------------LMDFPRRD-------PGFARVLIMTPTRELAYQIHEQCELLAKQTQ 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ +++ +LIATP +++++E N +++ ++LDEAD + D
Sbjct: 102 LKIGVVTGGINYGTHKEIFENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLD 161
Query: 323 RGFGPEISKILNPLKD 338
GF E+ +I + K+
Sbjct: 162 MGFRKEMLRICDEAKN 177
>gi|336263707|ref|XP_003346633.1| hypothetical protein SMAC_04806 [Sordaria macrospora k-hell]
gi|380090528|emb|CCC11825.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 934
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 117/245 (47%), Gaps = 38/245 (15%)
Query: 119 QQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG 178
Q++ SNI + K G FQ +GL A +++A+ + G VP+ IQ IP +L
Sbjct: 85 QRKSSNIQGKSVKKGGG-------FQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILER 137
Query: 179 KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238
K VV + +GSG+T A+++P+++ + H VG RA+
Sbjct: 138 KDVVGMARTGSGKTAAFVIPMIERL-----KGHSPRVGA------------------RAL 174
Query: 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298
++ + E A Q + K + L + + GG S + + A ++IATP L
Sbjct: 175 IMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMMAANPDIIIATPGRFLHL 234
Query: 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358
+ ++S ++YVV DEAD LF+ GF E+++IL+ L S QT+L +A +
Sbjct: 235 KVEMSLSLSSVKYVVFDEADRLFEMGFATELTEILHALPPSR--------QTLLFSATLP 286
Query: 359 EMLGE 363
L E
Sbjct: 287 SSLVE 291
>gi|344271256|ref|XP_003407456.1| PREDICTED: probable ATP-dependent RNA helicase DDX31 [Loxodonta
africana]
Length = 690
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 97/364 (26%), Positives = 158/364 (43%), Gaps = 63/364 (17%)
Query: 64 PLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKTNNPENKP----------S 113
P T ETQ+ K +K F +K + N E KP +
Sbjct: 27 PFFPGKNTGITETQRTFKGKAQK------TFSPKKYSAGTSNVNQEEKPCVKTSSLFKNN 80
Query: 114 PPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGI 172
P PE + + + +EK S+A F EL L +I + + + + +Q I
Sbjct: 81 PEIPELHRPA-VKQVQEKVFTSDA-----FHELDLHPHLIATINTVLKMSSMTSVQKQSI 134
Query: 173 PAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232
PA+L G+ ++ S +GSG+TLAY +P+VQ L + ++R +
Sbjct: 135 PALLEGRDALVRSQTGSGKTLAYCIPVVQ-----------SLQAMKSKIQRSDG------ 177
Query: 233 MHPRAIVLCTTEESADQGFH-MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIAT 291
P A+VL T E A Q F + K + + + GG K+ + I +LI+T
Sbjct: 178 --PYALVLVPTRELALQSFDTVQKLLKPFTWIVPGVLMGGEKRKSEKARLRKGINILIST 235
Query: 292 PSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQT 350
P ++ HI +N+ IR+++LDEAD + D GF +I+ ILN A+ + Q Q
Sbjct: 236 PGRLVDHIRSTKNIHFSRIRWLILDEADRILDLGFEKDITVILN-----AVNAECQKRQN 290
Query: 351 ILVTAAIAE---MLGE-------QLSSLME----CLERDNAGKVTAMLLEMDQAEVFDLT 396
+L++A + E L + +S L E C +D A + + D+ + F +
Sbjct: 291 VLLSATLTEGVTWLADISLHDPVSISVLDESHDQCNPKDKAAREVSQPRTSDKLDSFAIP 350
Query: 397 ESQD 400
ES D
Sbjct: 351 ESLD 354
>gi|324505328|gb|ADY42291.1| ATP-dependent RNA helicase DDX27 [Ascaris suum]
Length = 688
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 113/230 (49%), Gaps = 36/230 (15%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ + L M+KAV G P+ IQ IP L G+ + + +G+G+T A++LP++
Sbjct: 146 SFEYMNLSRPMLKAVGACGFTKPTPIQAACIPLALAGRDLCACAATGTGKTAAFMLPIL- 204
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALL--PMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
E LL P + R +VL T E A Q FH+ + +S
Sbjct: 205 -----------------------ERLLFKPKQKSVTRVLVLVPTRELAMQVFHVTRLLSQ 241
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEAD 318
++++ + GG+ KA E ++IATP ++ H+ + N S DI +VLDEAD
Sbjct: 242 FSQVEICLCAGGLDIKAQEAALRLGPDIVIATPGRLIDHLHNAPNFSLHDIEVLVLDEAD 301
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSL 368
+ D F ++ +++ L S + QT+L +A + + + EQL+++
Sbjct: 302 RMLDEAFADQMKELIR------LCSANR--QTLLFSATMTDQI-EQLAAV 342
>gi|380798911|gb|AFE71331.1| putative ATP-dependent RNA helicase DDX41, partial [Macaca mulatta]
Length = 606
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 164 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 223
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 224 IMFC--LEQEKRLPF---------------SKREGPYGLIICPSRELARQTHGILEYYCR 266
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 267 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 326
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 327 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 362
>gi|167835531|ref|ZP_02462414.1| putative ATP-dependent RNA helicase rhlE [Burkholderia
thailandensis MSMB43]
Length = 402
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP++Q
Sbjct: 2 SFASLGLAEPLVRAVNELGYTQPTPIQAQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
E+ + RA++L T E A Q + S
Sbjct: 62 RLHTFYAENRSARRAV------------------RALILTPTRELAAQVEESVRAYSKYV 103
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGVS D + +++ATP +L H++ + + + +VLDEAD +
Sbjct: 104 KLRSAVMFGGVSINPQIDALKRGVDIVVATPGRLLDHMQQKTIDVSSLDILVLDEADRML 163
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 164 DMGFIHDIKRVLAKL 178
>gi|406595785|ref|YP_006746915.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii ATCC 27126]
gi|407682750|ref|YP_006797924.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str.
'English Channel 673']
gi|406373106|gb|AFS36361.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii ATCC 27126]
gi|407244361|gb|AFT73547.1| ATP-dependent RNA helicase SrmB [Alteromonas macleodii str.
'English Channel 673']
Length = 408
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F+EL L + A MG P+ IQ + IP L+G+ ++ S+ +G+G+T A+LLP Q
Sbjct: 2 TFEELELDEALCHAAADMGFETPTSIQELVIPHALDGRDILASAPTGTGKTAAFLLPACQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ RR +P R ++L T E A Q + A I+
Sbjct: 62 F--------------LLDYPRR-------QPGATRILILTPTRELALQVYEQALAITKHT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
++ + GG++ ++ + + +L+ATP +L+HIE C DI ++LDEAD +
Sbjct: 101 QIVCGVITGGINYGTDKETLSKNLDILVATPGRLLEHIEKEAADCRDIECLILDEADRML 160
Query: 322 DRGFGPEISKI 332
D GF +++I
Sbjct: 161 DMGFSTVVNQI 171
>gi|395505230|ref|XP_003756946.1| PREDICTED: probable ATP-dependent RNA helicase DDX41 [Sarcophilus
harrisii]
Length = 624
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 182 LKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 241
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 242 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 284
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 285 LLQEDSSPPLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 344
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 345 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATM 380
>gi|70992295|ref|XP_750996.1| ATP dependent RNA helicase (Dbp10) [Aspergillus fumigatus Af293]
gi|74697392|sp|Q8NJM2.1|DBP10_ASPFU RecName: Full=ATP-dependent RNA helicase dbp10
gi|21627815|emb|CAD37147.1| putative ATP-dependent RNA helicase [Aspergillus fumigatus]
gi|66848629|gb|EAL88958.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
Af293]
gi|159124566|gb|EDP49684.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
A1163]
Length = 869
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 124/260 (47%), Gaps = 39/260 (15%)
Query: 109 ENKPSPPQ----PEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVP 164
++K PP+ EQQ +N + K G + FQ +GL A ++KA+ + G VP
Sbjct: 36 KSKRQPPKKAFIAEQQTSANRKASNLK--GRTVKKGGGFQAMGLSANLLKAIARKGFSVP 93
Query: 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRD 224
+ IQ IP +++ + VV + +GSG+T A+++P+++ + H VG
Sbjct: 94 TPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEKL-----KSHSTKVG-------- 140
Query: 225 EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNA 283
R +VL + E A Q + K + L S + GG S + ++
Sbjct: 141 ----------ARGLVLSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFAMIAGN 190
Query: 284 PIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKS 343
P ++IATP L + N+ IRYVV DEAD LF+ GF ++++IL+ L +
Sbjct: 191 P-DIIIATPGRFLHLKVEMNLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPANR--- 246
Query: 344 NGQGFQTILVTAAIAEMLGE 363
QT+L +A + + L E
Sbjct: 247 -----QTLLFSATLPKSLVE 261
>gi|357156184|ref|XP_003577369.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 2
[Brachypodium distachyon]
Length = 662
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 22/188 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G E++ A+ G PS IQ + VL G+S +++ SGSG+TLAYL P++
Sbjct: 262 SFKEIGCGDEILGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPII- 320
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK--PMHPRAIVLCTTEESADQGFHMAKFISH 259
Q LR++EA+ K P +PR I+L T E + Q + IS
Sbjct: 321 -----------------QNLRKEEAMGVHKSSPRNPRVIILTPTAELSSQVLQNCRSISK 363
Query: 260 C-ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
A S + GG K + + +LIATP L +++ V +++R VV DE D
Sbjct: 364 SGAPFRSMVATGGFRQKTQLESLEQELDVLIATPGRFLYLLQEGFVQLNNLRCVVFDEVD 423
Query: 319 TLF-DRGF 325
LF + GF
Sbjct: 424 ILFGEEGF 431
>gi|357156181|ref|XP_003577368.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 50-like isoform 1
[Brachypodium distachyon]
Length = 651
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 22/188 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+E+G E++ A+ G PS IQ + VL G+S +++ SGSG+TLAYL P++
Sbjct: 251 SFKEIGCGDEILGALRSFGFPQPSHIQAMAYGPVLEGRSCIIADQSGSGKTLAYLCPII- 309
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK--PMHPRAIVLCTTEESADQGFHMAKFISH 259
Q LR++EA+ K P +PR I+L T E + Q + IS
Sbjct: 310 -----------------QNLRKEEAMGVHKSSPRNPRVIILTPTAELSSQVLQNCRSISK 352
Query: 260 C-ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
A S + GG K + + +LIATP L +++ V +++R VV DE D
Sbjct: 353 SGAPFRSMVATGGFRQKTQLESLEQELDVLIATPGRFLYLLQEGFVQLNNLRCVVFDEVD 412
Query: 319 TLF-DRGF 325
LF + GF
Sbjct: 413 ILFGEEGF 420
>gi|34364998|emb|CAE46035.1| hypothetical protein [Homo sapiens]
Length = 496
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 54 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 113
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L K P +++C + E A Q + ++
Sbjct: 114 IMFC--LEQEKRLPFS---------------KREGPYGLIICPSRELARQTHGILEYYCR 156
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 157 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 216
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
LDEAD + D GF +I I + K GQ QT+L +A +
Sbjct: 217 LDEADRMIDMGFEGDIRTIFSYFK-------GQR-QTLLFSATM 252
>gi|332021296|gb|EGI61675.1| Putative ATP-dependent RNA helicase DDX27 [Acromyrmex echinatior]
Length = 740
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 34/228 (14%)
Query: 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194
++++ ++F ++ L ++KA+ M P+ IQ IPA L G+ + + +G+G+T A
Sbjct: 145 TDSQTYTTFYQMNLSRPLLKAITTMNFVQPTPIQAATIPAALMGRDICGCAATGTGKTAA 204
Query: 195 YLLPLVQ--VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH 252
Y+LP+++ +Y LD P R +VL T E Q +
Sbjct: 205 YMLPILERLLYRPLD-----------------------GPSISRVLVLVPTRELGVQVYQ 241
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRY 311
+AK ++ ++ + GG+ K E V ++IATP ++ H+ + S D I
Sbjct: 242 VAKQLAQFTTIEIGLSVGGLDVKIQEGVLRKNPDIVIATPGRLIDHLRNAPTFSLDSIEV 301
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
++LDEAD + D F ++ I +K + QTIL +A + E
Sbjct: 302 LILDEADRMLDEYFAEQMKYI--------VKQCSRTRQTILFSATMTE 341
>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 555
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 20/195 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL +++AV ++G P+ IQ IPAVL G ++ + +G+G+T + LP+++
Sbjct: 8 SFNSLGLSEPLVRAVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILE 67
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S R +P+ RA++L T E A Q +
Sbjct: 68 RLSHS---------------RATSGKIPV-----RALILTPTRELAAQVEQSVREYGKYL 107
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+L S++ GGV D + +++ATP +L H++ R + ++ +VLDEAD +
Sbjct: 108 KLRSTVMFGGVGINPQIDALRRGVDIVVATPGRLLDHLQQRTIDLSSLQILVLDEADRML 167
Query: 322 DRGFGPEISKILNPL 336
D GF +I ++L L
Sbjct: 168 DMGFIHDIKRVLKYL 182
>gi|170059153|ref|XP_001865238.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
gi|167878066|gb|EDS41449.1| ATP-dependent RNA helicase abstrakt [Culex quinquefasciatus]
Length = 619
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 132/288 (45%), Gaps = 43/288 (14%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ +F+E+ ++ +EK + PS IQ GIPAVL G+ ++ + +GSG+TL ++LP+
Sbjct: 179 ICTFREMKFPKSILAGLEKRNIRKPSPIQVQGIPAVLAGRDLIGIAFTGSGKTLVFVLPI 238
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLP-MKPMHPRAIVLCTTEESADQGFHMAKFIS 258
V + + Q +R LP M P +++C + E A Q F + ++
Sbjct: 239 V-------------MFSLEQEIR-----LPFMAKEGPYGLIICPSRELAKQTFDIVQY-- 278
Query: 259 HCARLD--------SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
+C L S++ GGV V +++ATP ++ ++ + V D R
Sbjct: 279 YCQHLQQAGMPEIRSALAIGGVPVNEALAVIQQGCHIMVATPGRLMDMLDKKLVKLDVCR 338
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
Y+ +DEAD + D GF ++ I + K GQ QT+L +A + + + S +
Sbjct: 339 YLCMDEADRMIDMGFEEDVRTIFSYFK-------GQR-QTLLFSATMPKKIQNFAKSALV 390
Query: 371 CLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
N G+ A + + Q + E+ KVV +D L + P
Sbjct: 391 KPVTINVGRAGAASMNVTQDVEYVKQEA------KVVYLLDCLQKTPP 432
>gi|149912233|ref|ZP_01900811.1| ATP-dependent RNA helicase [Moritella sp. PE36]
gi|149804692|gb|EDM64744.1| ATP-dependent RNA helicase [Moritella sp. PE36]
Length = 421
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 23/195 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ L L ++I A+ L P+ IQ +P + G+ ++ S+ +G+G+TLA+LLP +Q
Sbjct: 3 FESLDLDPQLIVALTDNNLVQPTLIQQQVLPTAMEGRDILASAPTGTGKTLAFLLPAIQ- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFISHCA 261
H L P + + P R ++L T E A Q F AK ++
Sbjct: 62 -------HLLDF--------------PRRELGPGRVLILTPTRELASQVFQQAKMLAAYT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
SM GGV +V + ++IATP +L++I C I ++LDEAD +
Sbjct: 101 DHKVSMVTGGVDYALHAEVLKNNLDIVIATPGRLLEYIRRDAFECAAIEVLILDEADRML 160
Query: 322 DRGFGPEISKILNPL 336
D GF ++ +I N +
Sbjct: 161 DMGFYDDVKRITNEM 175
>gi|320587772|gb|EFX00247.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 613
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 140/284 (49%), Gaps = 45/284 (15%)
Query: 126 ASEREKSSGSNAEVV------SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
A+ K++ NA+ V +SF +LGL +++AV + P+ +Q IP LNG+
Sbjct: 21 AAPETKNTSQNADAVDVAAKETSFADLGLDPRLVQAVARQSFEKPTLVQRKAIPLALNGQ 80
Query: 180 SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239
++ + +GSG+T AYLLP++QV +L+R + A++
Sbjct: 81 DLLAKAKTGSGKTAAYLLPVLQV-----------------ILKRKQT---DTTAFTSALI 120
Query: 240 LCTTEESADQGFH-MAKFISHCARLDSSME-NGGVSSKALED-VSNAPIGMLIATPSEVL 296
L T E ADQ F +A+F S CA+ ++++ VS L +SN P ++++TPS
Sbjct: 121 LAPTRELADQVFKSIAEFSSFCAKDITAVKLTDKVSDAVLRSLLSNMP-DIVVSTPSRAW 179
Query: 297 QHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356
+ ++ D + +VLDEAD + G+ ++ +I L +G QTIL++A
Sbjct: 180 HAVSSSFMTLDKLTNLVLDEADLVLSYGYSEDLEQISGSLP--------KGIQTILMSAT 231
Query: 357 I---AEMLGEQLS---SLMECLERDNAGK-VTAMLLEMDQAEVF 393
+ + L L +L+ ERD G+ VT +++ + E F
Sbjct: 232 LTTEVDTLKGMLCRNPTLLNLEERDAEGEGVTQYVVKCAEDEKF 275
>gi|383858565|ref|XP_003704771.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Megachile
rotundata]
Length = 625
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 183 LKSFKEMKFHRGILNGLEQKGIIKPTPIQVQGIPTVLSGRDMIGIAFTGSGKTLVFVLPI 242
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E + V R+E P +++C + E A Q + + + ++
Sbjct: 243 IMFC--LEQEVAMPFV-------RNEG--------PYGLIICPSRELAKQTYDIIRHYTN 285
Query: 260 ------CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
C + S + GGV +V N + +++ATP ++ ++ + V RY+
Sbjct: 286 SLRQAGCPEIRSCLAIGGVPVSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLC 345
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+DEAD + D GF ++ I + + GQ QT+L +A +
Sbjct: 346 MDEADRMIDMGFEEDVRTIFSFFR-------GQR-QTLLFSATM 381
>gi|423205411|ref|ZP_17191967.1| hypothetical protein HMPREF1168_01602 [Aeromonas veronii AMC34]
gi|404624206|gb|EKB21046.1| hypothetical protein HMPREF1168_01602 [Aeromonas veronii AMC34]
Length = 416
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+SF EL L + + + ++G P+ IQ IP +L G+ ++ + +G+G+T A++LPL+
Sbjct: 4 ASFAELALSPRLQQTLTELGYAAPTPIQARAIPVILAGRDLMAGAQTGTGKTAAFVLPLL 63
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+ QL+ QM P RA+VL T E A Q
Sbjct: 64 E-----------QLLAQPQM---------ESPRPIRALVLVPTRELAVQVAESVARYGQG 103
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S++ GGVS A A + +LIATP +L H+ +S + + ++V DEAD +
Sbjct: 104 TGLTSTLVYGGVSIAAQVAALQAGVDLLIATPGRLLDHLRQGALSLEHLSHLVFDEADRM 163
Query: 321 FDRGFGPEISKIL 333
D GF EI +L
Sbjct: 164 LDMGFMDEIKALL 176
>gi|156083018|ref|XP_001608993.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis T2Bo]
gi|154796243|gb|EDO05425.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis]
Length = 783
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 36/240 (15%)
Query: 129 REKSSGSNAEVVSSFQELGLKAEMIKAVE-KMGLFVPSEIQCVGIPAVLNGKSVVLSSGS 187
++K ++ +F LGL + A+E K+ PS IQ IPAVL G+ VV + +
Sbjct: 10 KQKKKSNHEGGTGAFGLLGLDRTLCYALEHKLRYKQPSTIQRRTIPAVLQGRDVVCIART 69
Query: 188 GSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESA 247
GSG+T AYL P+VQ+ E H + VG+ R ++L T E A
Sbjct: 70 GSGKTAAYLAPVVQLL-----EGHSRTVGV------------------RCLILLPTRELA 106
Query: 248 DQ-GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPI---GMLIATPSEVLQHIEDRN 303
Q + KFI+ R D+ + +++E A +++ATP + QHI +++
Sbjct: 107 LQVSSVLKKFIAFTKRDDALRSATLIGGESVEGQFGALTFNPDLVVATPGRLSQHIAEKS 166
Query: 304 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
+ + + V+DEAD LF+ GF P++ +IL+ L + QT+LV+A + L E
Sbjct: 167 IDLTLVTHFVIDEADKLFEMGFMPDVYRILSRLPEKR--------QTMLVSATLPSELTE 218
>gi|428163077|gb|EKX32169.1| hypothetical protein GUITHDRAFT_121663 [Guillardia theta CCMP2712]
Length = 914
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 39/225 (17%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+ +G + + ++ G VP+ IQ IP VL G +V + +GSG+T A+LLP+
Sbjct: 152 FESMGFSYPVYRGIKMKGYKVPTPIQRKTIPLVLRGHDLVAMARTGSGKTAAFLLPM--- 208
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ +L E H VGI RA++L T E A Q K +
Sbjct: 209 FERLKE--HSVKVGI------------------RALILSPTRELALQTLKFGKELGKYTG 248
Query: 263 LDSSMENGGVSSKALED----VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
L ++ GG S +ED +++ P ++IATP +L H+E+ ++ ++Y+V DE D
Sbjct: 249 LRMALLVGGDS---MEDQFAALAHNP-DVVIATPGRLLHHLEEVGLTLQSVQYIVFDECD 304
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363
LF+ GF E+ I+ + D+ QT+L +A + L E
Sbjct: 305 RLFEMGFAAELRAIMKKVSDNR--------QTLLFSATLPAALAE 341
>gi|359446869|ref|ZP_09236508.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20439]
gi|358039341|dbj|GAA72757.1| ATP-dependent RNA helicase SrmB [Pseudoalteromonas sp. BSi20439]
Length = 408
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F E L +++ A+ KMG P+ IQ IP L G+ ++ S+ +G+G+T A+L+P +Q
Sbjct: 3 FSEFDLDDKLLNAINKMGYETPTSIQQQAIPEALQGRDILASAPTGTGKTAAFLIPAIQY 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ RRD P R +++ T E A Q + ++ +
Sbjct: 63 --------------LMDFPRRD-------PGFARVLIMTPTRELAYQIHEQCELLAKQTQ 101
Query: 263 LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322
L + GG++ +++ +LIATP +++++E N +++ ++LDEAD + D
Sbjct: 102 LKIGVVTGGINYGTHKEIFENNNDILIATPGRLMEYLETENFHAENVEMLILDEADRMLD 161
Query: 323 RGFGPEISKILNPLKD 338
GF E+ +I + K+
Sbjct: 162 MGFRKEMLRICDEAKN 177
>gi|261212516|ref|ZP_05926801.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
gi|260838447|gb|EEX65103.1| ATP-dependent RNA helicase [Vibrio sp. RC341]
Length = 422
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +LGL + ++ + +G+ P+ IQ IP VL G+ V+ + +G+G+T A+ LPL+Q
Sbjct: 7 TFSQLGLDSRLLNTLSDLGIVNPTLIQQQAIPHVLQGRDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ I Q +R+E RA+VL T E A Q + +
Sbjct: 67 RF-------------IDQPWQREE-----NSKEIRALVLVPTRELAQQVLDSLQAYAKGT 108
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L GG S K + + +LIATP +L H +++ + +VLDEAD +
Sbjct: 109 DLKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRML 168
Query: 322 DRGFGPEISKILNPL 336
D GF P++ ++L L
Sbjct: 169 DMGFMPDLQRVLRRL 183
>gi|50419843|ref|XP_458454.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
gi|74659385|sp|Q6BTL5.1|DRS1_DEBHA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49654120|emb|CAG86536.1| DEHA2C17534p [Debaryomyces hansenii CBS767]
Length = 771
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 116/226 (51%), Gaps = 30/226 (13%)
Query: 114 PPQPEQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP 173
P + + ++ ++ E+++ + ++ ++FQ L L ++K + ++G PS IQ IP
Sbjct: 231 PVEDTAEDMAEFYADEEEATTAKKQLHTTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIP 290
Query: 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM 233
L GK +V + +GSG+T AY++P+++ ++L + P K
Sbjct: 291 IALLGKDIVAGAVTGSGKTAAYMIPIIE-----------------RLLYK-----PAKIS 328
Query: 234 HPRAIVLCTTEESA----DQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLI 289
R IVL T E A D G + +F+++ L+ + GG++ + E ++I
Sbjct: 329 STRVIVLAPTRELAIQVCDVGKKIGQFVNN---LNFGLAVGGLNLRQQEQQLKTRPDIVI 385
Query: 290 ATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
ATP ++ HI + + S D + +V+DEAD + D GF E+++IL+
Sbjct: 386 ATPGRLIDHIRNSPSFSIDSLEVLVIDEADRMLDEGFQAELTEILS 431
>gi|442750425|gb|JAA67372.1| Putative atp-dependent rna helicase [Ixodes ricinus]
Length = 767
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 107/220 (48%), Gaps = 33/220 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ +GL ++K V K G +P+ IQ IP +L G+ +V + +GSG+T A+L+P+
Sbjct: 16 FQSMGLSPPILKGVLKRGYQIPTPIQRKTIPVILEGRDMVAMARTGSGKTAAFLVPI--- 72
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
LD+ L RA+VL T E A Q AK +
Sbjct: 73 ---LDKLKARSLQAGA-----------------RALVLSPTRELALQTHKFAKELGKFTD 112
Query: 263 LDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GG + E + P +LIATP L + + ++ I+YVV DEAD LF
Sbjct: 113 LKSTVILGGDNMEDQFEAIHENP-DVLIATPGRFLHIVMEMDLKLSSIKYVVFDEADRLF 171
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
+ GF ++++IL+ L ++ QT+L +A + ML
Sbjct: 172 EMGFQEQLNEILHRLPENR--------QTLLFSATLPRML 203
>gi|156406955|ref|XP_001641310.1| predicted protein [Nematostella vectensis]
gi|156228448|gb|EDO49247.1| predicted protein [Nematostella vectensis]
Length = 487
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 126/259 (48%), Gaps = 37/259 (14%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V +F+E+ ++ A++K G+ P+ IQ G+PAVL G+ ++ + +GSG+TL + LP+
Sbjct: 46 VKTFKEMKFPRPILAALKKKGITHPTPIQVQGLPAVLTGRDMIGIAFTGSGKTLVFTLPI 105
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E + +R+E P +++ + E A Q F + I+H
Sbjct: 106 IMF--SLEQEKAMP-------FQRNEG--------PYGMIVVPSRELARQTFEV---ITH 145
Query: 260 CAR---------LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
+R L +++ GG S K D + M++ATP ++ ++ R ++ D R
Sbjct: 146 FSRALEAHGFPSLRTNLCIGGSSIKEQSDAMKRGVHMVVATPGRLMDLLDKRIITLDVCR 205
Query: 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370
Y+VLDEAD + D GF ++ I + K QT+L +A + + + S +
Sbjct: 206 YLVLDEADRMIDMGFEEDVRTIFSYFKSQR--------QTLLFSATMPKKIQNFAKSALV 257
Query: 371 CLERDNAGKVTAMLLEMDQ 389
N G+ A L++ Q
Sbjct: 258 KPVTVNVGRAGAASLDVIQ 276
>gi|156396703|ref|XP_001637532.1| predicted protein [Nematostella vectensis]
gi|156224645|gb|EDO45469.1| predicted protein [Nematostella vectensis]
Length = 700
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 37/222 (16%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
FQ LGL + K V K G VP+ IQ +P V++GK VV + +GSG+T A+L+P+
Sbjct: 21 FQSLGLSFPVFKGVMKKGYKVPTPIQRKTLPLVMDGKDVVAMARTGSGKTAAFLIPM--- 77
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ +L + H VGI RA++L T E A Q KFI R
Sbjct: 78 FEKL--QTHTAKVGI------------------RALILSPTRELALQ---TQKFIKELGR 114
Query: 263 ---LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
L SS+ GG S + + +++ATP L + + + + YVV DEAD
Sbjct: 115 FTGLKSSVILGGDSLEGQFAAIHTNPDIVVATPGRFLHVVMEMELKLSSVEYVVFDEADR 174
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
LF+ GF ++ +I++ L +S QT+L +A + +L
Sbjct: 175 LFEMGFAEQLHEIIHRLPESR--------QTLLFSATLPRLL 208
>gi|333907959|ref|YP_004481545.1| DEAD/DEAH box helicase domain-containing protein [Marinomonas
posidonica IVIA-Po-181]
gi|333477965|gb|AEF54626.1| DEAD/DEAH box helicase domain protein [Marinomonas posidonica
IVIA-Po-181]
Length = 398
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 30/229 (13%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF EL L + +A+ +G P+EIQ IP +L G ++ ++ +G+G+T+A+ P VQ
Sbjct: 2 SFAELDLDYTIEEAINSLGFETPTEIQQQAIPVILEGSDLLATAPTGTGKTIAFCAPAVQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+L RDE P+ ++L + E A Q F++ ++
Sbjct: 62 -----------------HVLDRDET----STTAPKVLILAPSRELARQIFNVIGGLTQHT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R+ S + GG + + P +L+ATP +++ E + + D+ Y V+DEAD +
Sbjct: 101 RIQSQLIIGGTPYGMQQQQLSEPCDILVATPGRLVELDEKQWLDLTDVSYFVIDEADRML 160
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AEMLGEQLSSLM 369
D GF I+KI L Q QT++ +A + E +G S+L+
Sbjct: 161 DMGFVNAINKIAKELP--------QEHQTLMFSATLEGEKMGRFASALL 201
>gi|237807743|ref|YP_002892183.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237500004|gb|ACQ92597.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 438
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 21/191 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ L L +++AVE++G P+ IQ IP + G+ V+ S+ +G+G+T A+LLP++Q
Sbjct: 2 SFESLELDPVLLQAVEELGFKRPTTIQSQVIPVAMEGRDVMASAPTGTGKTAAFLLPIMQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
H+ RR +P RA++L T E A Q A+ ++
Sbjct: 62 ---------HM-----IDFPRR-------RPGPARALILTPTRELALQITEQAEALAAYT 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ + GGV+ + + ++IATP ++Q+IED DI +VLDEAD +
Sbjct: 101 HMKVASIIGGVAEEKQLPALEKTVDIIIATPGRLMQYIEDERFDSRDIEILVLDEADRML 160
Query: 322 DRGFGPEISKI 332
D GF ++ +I
Sbjct: 161 DMGFIGDVDRI 171
>gi|372270527|ref|ZP_09506575.1| ATP-dependent DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 460
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 111/235 (47%), Gaps = 35/235 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F EL L ++KA++K+G P+ +Q +P L G +++ + +GSG+TLA++ P++Q
Sbjct: 9 FAELMLHERLLKAIDKLGFTQPTPVQLETLPEALAGHDLIVGAETGSGKTLAFVAPMLQH 68
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR 262
+ LD P R ++L T E A+Q K ++ R
Sbjct: 69 F--LDT--------------------PSPNTGTRGLILTPTRELAEQVCQSVKDLAAFTR 106
Query: 263 LDSSMENGGVSSK--ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
++ GG K A E N + L+ATP + +H+E + + DD+ Y+VLDEAD +
Sbjct: 107 VNVMTVCGGTGFKEQAAEMRKNPEV--LVATPGRLAEHLERQTLDLDDLEYLVLDEADRM 164
Query: 321 FDRGFGPEISKILN---PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372
D GF E+ I++ P + S + F L + E+L + L E L
Sbjct: 165 LDMGFRDEVMAIVDICRPQRQSMV------FSATLTHRGVRELLPQVLKDPKELL 213
>gi|328781928|ref|XP_397101.4| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis mellifera]
Length = 772
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 38/244 (15%)
Query: 118 EQQQLSNIASEREKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN 177
E+ ++++I + K SG FQ + L ++K + K G +P+ IQ IP L
Sbjct: 20 EENEINDIKKKVYKKSGG-------FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALE 72
Query: 178 GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237
G+ +V + +GSG+T +L+PL + + I Q + RA
Sbjct: 73 GRDIVAMARTGSGKTACFLIPL------------FEKLKIRQA-----------KVGARA 109
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297
++L T E A Q K + L +++ GG + + + +LIATP L
Sbjct: 110 LILSPTRELALQTLKFIKELGRFTGLKATIILGGDNMENQFSAIHGNPDILIATPGRFLH 169
Query: 298 HIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+ ++ ++I YVV DEAD LF+ GFG +I++I+N L +S QT+L +A +
Sbjct: 170 ICIEMDLQLNNIEYVVFDEADRLFEMGFGEQINEIINRLPESR--------QTLLFSATL 221
Query: 358 AEML 361
++L
Sbjct: 222 PKLL 225
>gi|217970063|ref|YP_002355297.1| DEAD/DEAH box helicase [Thauera sp. MZ1T]
gi|217507390|gb|ACK54401.1| DEAD/DEAH box helicase domain protein [Thauera sp. MZ1T]
Length = 545
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 17/192 (8%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF +LGL E+++AV G P+ IQ IP V+ GK V+ + +G+G+T + LPL+
Sbjct: 2 SFADLGLIPELLQAVTDAGYTEPTPIQRQAIPIVIAGKDVMGGAQTGTGKTAGFTLPLLH 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
++ + + P + RA++L T E A Q F K S
Sbjct: 62 RIAR----------------HANTSTSPAR-HQTRALILAPTRELAMQVFESVKTYSKHL 104
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S GGV + + I ++IATP +L H+E ++++ + +VLDEAD +
Sbjct: 105 PLRSVCVYGGVDIRPQQAELRRGIEIVIATPGRLLDHLEQKSINLSQVEVLVLDEADRML 164
Query: 322 DRGFGPEISKIL 333
D GF P+I +IL
Sbjct: 165 DMGFIPDIKRIL 176
>gi|333894253|ref|YP_004468128.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2]
gi|332994271|gb|AEF04326.1| ATP-dependent RNA helicase SrmB [Alteromonas sp. SN2]
Length = 414
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 23/192 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F++L L E+ AV MG P+ +Q + IP ++G+ ++ S+ +G+G+T A+LLP+ Q
Sbjct: 2 TFEDLELDEELCHAVADMGYESPTSVQSLVIPHAMDGRDILASAPTGTGKTAAFLLPVCQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMK-PMHPRAIVLCTTEESADQGFHMAKFISHC 260
LD P K P R ++L T E A Q + A ++
Sbjct: 62 FL--LD--------------------YPRKQPGSTRILILTPTRELALQVYEQAVELTKH 99
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ S + GG++ + + I +L+ATP + +HI++ C DI ++LDEAD +
Sbjct: 100 TDIVSGVITGGINYGTDRETLSQSIDILVATPGRLFEHIQNEMADCRDIECLILDEADRM 159
Query: 321 FDRGFGPEISKI 332
D GF +++I
Sbjct: 160 LDMGFRTIVNQI 171
>gi|229528359|ref|ZP_04417750.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
gi|229334721|gb|EEO00207.1| ATP-dependent RNA helicase [Vibrio cholerae 12129(1)]
Length = 422
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ +P VL GK V+ + +G+G+T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIVNPTPIQQQAVPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q + I Q +R+ RA+VL T E A Q +
Sbjct: 62 LPLIQRF-------------IEQPWQRE-----TNSKEIRALVLVPTRELAQQVLDSLQA 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L GG S K + + +LIATP +L H +++ + +VLDE
Sbjct: 104 YAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ ++L L
Sbjct: 164 ADRMLDMGFMPDLQRVLRRL 183
>gi|363740165|ref|XP_003642273.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
[Gallus gallus]
Length = 858
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 125/294 (42%), Gaps = 46/294 (15%)
Query: 98 KLNGSAKTNNPENKPSPPQPEQQQLSNIASEREKS---SGSNAEVVSSFQELGLKAEMIK 154
K N A+ P +P P P + A+E ++ + + + FQ +GL + K
Sbjct: 27 KHNSRARALGP-RRPLPAFPTAEDKDGDAAEDTQAMVRAQNKKKKSGGFQSMGLSYPVFK 85
Query: 155 AVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214
V K G VP+ IQ IP +L G+ VV + +GSG+T +LLP+
Sbjct: 86 GVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMF-------------- 131
Query: 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS 274
E L P RA++L T E A Q K + L +++ GG
Sbjct: 132 ----------ERLKAPSPSGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKM 181
Query: 275 KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334
+ + ++IATP ++ + N+ + YVV DEAD LF+ GF ++ +IL
Sbjct: 182 EDQFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEILA 241
Query: 335 PLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMD 388
L S QT+L +A + ++L +E AG ML+ +D
Sbjct: 242 RLPGS--------HQTVLFSATLPKLL----------VEFARAGLTEPMLIRLD 277
>gi|356558435|ref|XP_003547512.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
17-like [Glycine max]
Length = 591
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 113/213 (53%), Gaps = 24/213 (11%)
Query: 129 REKSSGSNAEVVSS--FQELGLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLNGKSVVLSS 185
+ + +G+N++V +S F LGL++ + + + E++G VP+ +Q IP +L+G+ ++++
Sbjct: 11 KNEGNGTNSDVFASCSFSSLGLESNLCEQLRERLGFEVPTLVQAQAIPVILSGRHALVNA 70
Query: 186 GSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE 245
+G+G+T+AYL P++ HHLQ G ++R + A+VL T E
Sbjct: 71 ATGTGKTVAYLAPII---------HHLQ--GYENRIQRSDGTF--------ALVLVPTRE 111
Query: 246 SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIED-RN 303
Q + + + + H G +++ E I +LIATP +L H+++ +
Sbjct: 112 LCLQVYEILQKLLHWFHWIVPGYIMGGENRSKEKARLRKGISILIATPGSLLDHLKNTTS 171
Query: 304 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
++R+++ DEAD + GFG I +IL+ L
Sbjct: 172 FLYSNLRWIIFDEADRILKLGFGKNIEEILDLL 204
>gi|195123476|ref|XP_002006232.1| GI18677 [Drosophila mojavensis]
gi|193911300|gb|EDW10167.1| GI18677 [Drosophila mojavensis]
Length = 787
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 34/227 (14%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E ++SF ++ L +++A+ +G P+ IQ IP L G+ + + +G+G+T AY+L
Sbjct: 154 ETITSFYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYML 213
Query: 198 PLVQ--VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
P V+ +Y L+ + IT R +VL T E Q + + K
Sbjct: 214 PTVERLLYRPLNNK------AIT-----------------RVLVLVPTRELGAQVYQVTK 250
Query: 256 FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVL 314
+ ++ + GG+ KA E V ++IATP ++ HI++ + + D I ++L
Sbjct: 251 QLCQFTSIEVGLAIGGLDVKAQETVLRQNPDIVIATPGRLIDHIKNTPSFTLDSIEVLIL 310
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
DEAD + D F ++ +I+N S K+ QT+L +A ++E +
Sbjct: 311 DEADRMLDEYFAEQMKEIIN----SCCKTR----QTMLFSATMSEQV 349
>gi|167533855|ref|XP_001748606.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772847|gb|EDQ86493.1| predicted protein [Monosiga brevicollis MX1]
Length = 698
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 106/207 (51%), Gaps = 20/207 (9%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ S+ E GL EM+KA++K+G P+ IQ IP LN + ++ + +GSG+TLA++LPL
Sbjct: 272 LRSWDEAGLNPEMLKAIQKLGFENPTPIQRAAIPIGLNNRDIIGVAETGSGKTLAFVLPL 331
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ ++ + Q++R + P A++L T + A Q A +
Sbjct: 332 LN-----------WIISLPQLVREQDI-----DNGPYAVILAPTRDLAQQIEDEANKFAR 375
Query: 260 --CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
RL S + GG S + N ++IATP ++ +++ + + Y+V+DEA
Sbjct: 376 PLGVRLVSVI--GGHSREDQSFKLNQGCEVVIATPGRLIDVLDNHYMVLNQCSYIVMDEA 433
Query: 318 DTLFDRGFGPEISKILNPLKDSALKSN 344
D + D GF PE+ +IL + S +K +
Sbjct: 434 DRMLDMGFEPEVQRILEYIPVSNMKPD 460
>gi|426401500|ref|YP_007020472.1| DEAD/DEAH box helicase [Candidatus Endolissoclinum patella L2]
gi|425858168|gb|AFX99204.1| DEAD/DEAH box helicase family protein [Candidatus Endolissoclinum
patella L2]
Length = 493
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 96/196 (48%), Gaps = 24/196 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+++F LGL +I+AV G P+ IQ IP +L G+ VV + +G+G+T A+LLPL
Sbjct: 8 LTNFNALGLAKAVIQAVLSEGYDAPTPIQVKAIPLILEGRDVVAVAQTGTGKTAAFLLPL 67
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI-S 258
+ S+LD+ + KP R +VL T E A Q H A I
Sbjct: 68 L---SKLDQAGRI-----------------AKPKCTRVLVLSPTRELATQ-IHKAVLIYG 106
Query: 259 HCARLDSSMENGGVSSKALEDVSNAP-IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
L S++ GG S ++ AP + L+ATP +L HI + + VVLDEA
Sbjct: 107 KKLHLRSTVIIGGAKS-CVQIRKCAPGVDFLVATPGRLLDHIRSGTIDLGNTEVVVLDEA 165
Query: 318 DTLFDRGFGPEISKIL 333
D + D GF P + IL
Sbjct: 166 DQMLDLGFMPAVRNIL 181
>gi|152995724|ref|YP_001340559.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150836648|gb|ABR70624.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 448
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 35/229 (15%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP-LVQ 201
F+E G ++K++ +G +EIQ IP + G+ ++ SS +GSG+TLAYLLP L +
Sbjct: 3 FEEFGFDNRILKSIGHLGFDEATEIQARAIPEAMAGRDLLASSKTGSGKTLAYLLPALHR 62
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
VY + + +RD PR ++L T E A Q F + + +
Sbjct: 63 VYKK------------KALSKRD----------PRVVILVPTRELAKQVFGQLRLLLAAS 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
R S + GG + ++ATP ++ H++ R+V + + +VLDEAD +
Sbjct: 101 RFTSILIQGGENFNDQHKSLQKDPHFIVATPGRLVDHLKQRHVFLEGLELLVLDEADRML 160
Query: 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA-----IAEMLGEQL 365
D GF + I +SA + QT+ +A I+E+ GE L
Sbjct: 161 DLGFADAMRAI-----NSAASHRQR--QTLFFSATLDNTEISEIAGELL 202
>gi|421483482|ref|ZP_15931057.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400198205|gb|EJO31166.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 519
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 89/193 (46%), Gaps = 19/193 (9%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
S F +LGL +++A+ G P+ IQ IP VL G ++ ++ +G+G+T + LP++
Sbjct: 5 SPFADLGLADSLLRAIADTGYTAPTPIQAQAIPQVLKGGDLLAAAQTGTGKTAGFTLPIL 64
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
+ Q E LR KP PR ++L T E Q +
Sbjct: 65 HLLMQQKPE-----------LR--------KPGRPRCLILTPTRELTAQVAESVQTYGKY 105
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
L S + GGV+ P+ +L+ATP +L H + V + +VLDEAD +
Sbjct: 106 TSLTSMVMFGGVNINPQISALRKPLDILVATPGRLLDHCGQKTVDLSGVEILVLDEADRM 165
Query: 321 FDRGFGPEISKIL 333
D GF +I KIL
Sbjct: 166 LDMGFIRDIRKIL 178
>gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 482
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 21/192 (10%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF LGL A+++KAV G PS IQ IPAVL GK V+ ++ +G+G+T + LPL++
Sbjct: 2 SFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ S+ ++ P K + RA+VL T E A Q +
Sbjct: 62 LLSKGNKA-------------------PAKQV--RALVLTPTRELAAQVGESVEIYGKNL 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S++ GGV + + +L+ATP +L R V+ + +VLDEAD +
Sbjct: 101 PLKSAVIFGGVGIGPQISKLSRGVDILVATPGRLLDLYNQRAVNFSQLEVLVLDEADRML 160
Query: 322 DRGFGPEISKIL 333
D GF +I KIL
Sbjct: 161 DMGFIHDIKKIL 172
>gi|194897089|ref|XP_001978588.1| GG17597 [Drosophila erecta]
gi|190650237|gb|EDV47515.1| GG17597 [Drosophila erecta]
Length = 955
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 24/219 (10%)
Query: 119 QQQLSNIASEREKSSGSN--AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL 176
+QQ+++I E E + N V SF+E L A +I+ +++ G P+ IQ G P L
Sbjct: 217 EQQVADIRRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIAL 276
Query: 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPR 236
+G+ +V + +GSG+TLAY+LP + V+ +G + R E P
Sbjct: 277 SGRDLVGIAQTGSGKTLAYMLPAI-VH-----------IGNQPPIIRGEG--------PI 316
Query: 237 AIVLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
A+VL T E A Q + + H + + + GG S + + ++IATP
Sbjct: 317 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGR 376
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
++ +E+RN + Y+VLDEAD + D GF P+I KI+
Sbjct: 377 LIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKII 415
>gi|451811659|ref|YP_007448114.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776817|gb|AGF47816.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 456
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 33/215 (15%)
Query: 129 REKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSG 188
+EK N +++ F GL ++ ++ +G P+ IQ IP +LNG+ V+ ++ +G
Sbjct: 2 KEKRENKNKQIL--FDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTG 59
Query: 189 SGRTLAYLLPLVQ-----VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTT 243
+G+T A++LP++ S HL R ++L T
Sbjct: 60 TGKTAAFVLPIINKILPYANSSTSPARHLL----------------------RVLILVPT 97
Query: 244 EESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIED 301
E A+Q + S L S + GG E+ N +G +L+ATP ++ HIE
Sbjct: 98 RELANQVYDSVVIYSKNTNLRSVVLFGGADHYNQEN--NLKLGCEILVATPGRLIAHIEQ 155
Query: 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
N+ +I VLDEAD + D GF P+I KI++ L
Sbjct: 156 GNLHLQNIEIFVLDEADRMLDMGFMPDIDKIISKL 190
>gi|409082532|gb|EKM82890.1| hypothetical protein AGABI1DRAFT_68941 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 613
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 24/205 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ F+++ + ++K ++ + P+ IQ GIPA +G+ ++ + +GSG+TLA+ LPL
Sbjct: 177 IEHFEDMKIPDPILKHLKSNRIITPTPIQLQGIPAAFSGRDIIGIAFTGSGKTLAFCLPL 236
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF-HMAKFIS 258
+ + L+EE L V R E P ++LC + E A+Q F ++ + S
Sbjct: 237 IML--ALEEEKKLPFV-------RGEG--------PVGVILCPSRELANQTFENVNTWCS 279
Query: 259 HCAR------LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
AR L+S + GG++ V + I +++ATP ++ +E + + ++ +Y+
Sbjct: 280 ALARDNKYPQLNSLLCMGGIAMNEQSHVLSKGIHIVVATPGRLIDMLEKKRFTFNNCKYL 339
Query: 313 VLDEADTLFDRGFGPEISKILNPLK 337
+DEAD + D GF ++ I++ K
Sbjct: 340 CMDEADRMIDLGFEDDVRNIISFFK 364
>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
Length = 429
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 22/195 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F GL A++++AV G P+ IQ IP V+ G+ ++ ++ +G+G+T A+ LP++Q
Sbjct: 2 TFDCFGLSADILRAVRTEGYTTPTPIQAQAIPLVVAGRDLLAAAQTGTGKTAAFTLPILQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
S + H PRA+VL T E A Q +
Sbjct: 62 RLSAVPTRHRA----------------------PRALVLTPTRELAAQVRESVRSYGRHL 99
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S+ GGV + + +++ATP +L H++ R V + VLDEAD +
Sbjct: 100 PLRSTAVFGGVGINPQISALRSGVDVVVATPGRLLDHLQQRTVELSRVEIFVLDEADRML 159
Query: 322 DRGFGPEISKILNPL 336
D GF +I K++ L
Sbjct: 160 DMGFIRDIRKVMAAL 174
>gi|262403813|ref|ZP_06080371.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
gi|262350317|gb|EEY99452.1| ATP-dependent RNA helicase [Vibrio sp. RC586]
Length = 421
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +LGL ++ + +G+ P+ IQ IP VL GK V+ + +G+G+T A+ LPL+Q
Sbjct: 7 TFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPYVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ I Q R+E RA+VL T E A Q + +
Sbjct: 67 RF-------------IEQPWVREE-----NSKEIRALVLVPTRELAQQVLDSMQAYAKGT 108
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L GG S K + + +LIATP +L H +++ + +VLDEAD +
Sbjct: 109 ELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRML 168
Query: 322 DRGFGPEISKILNPL 336
D GF P++ ++L L
Sbjct: 169 DMGFMPDLQRVLRRL 183
>gi|223992625|ref|XP_002285996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977311|gb|EED95637.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 495
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 13/198 (6%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF +LGL +++ V MG P+ IQ +P + G+ V S+ +GSG+T A+LLP+
Sbjct: 1 IDSFSQLGLSRPLLRGVASMGFVTPTPIQASVLPVAMAGRDVCASAVTGSGKTAAFLLPV 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
++ L +G R+ AL RA+VL T E A Q M ++
Sbjct: 61 MERI--LQRGGGRTTMGGLNAKRKASALAA-----TRALVLTPTRELAAQCVSMMTAMAK 113
Query: 260 CARLDSSMENGG---VSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLD 315
L +++ GG V S+A E S + ++ATP +L HI + + V DD+ +++LD
Sbjct: 114 FTDLRAALIVGGAKNVMSQAAELRSRPDV--VVATPGRLLDHITNSQGVDLDDLEFLILD 171
Query: 316 EADTLFDRGFGPEISKIL 333
EAD L D GF E+ +I+
Sbjct: 172 EADRLLDLGFQDEVHEIV 189
>gi|385785555|ref|YP_005816664.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
gi|310764827|gb|ADP09777.1| ATP-dependent RNA helicase SrmB [Erwinia sp. Ejp617]
Length = 442
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L +++++++ G P+ IQ IP L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 258
+Q H L P K P R ++L T E A Q A+ ++
Sbjct: 63 LQ--------HLLDF--------------PRKKSGPPRILILTPTRELAMQVADQARELA 100
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
LD + GGV+ +V + +++AT +LQ+I++ N C + ++LDEAD
Sbjct: 101 KHTHLDIATITGGVAFMNHAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEAD 160
Query: 319 TLFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 161 RMLDMGFAQDIETI 174
>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
Length = 745
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 19/206 (9%)
Query: 133 SGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGR 191
+GSN E +S+F + GL +K V+K P+ +Q IP V++G+ ++ + +GSG+
Sbjct: 289 TGSNCPEKISNFDDAGLYDTFLKNVKKSNYDRPTPVQKYSIPIVMSGRDLMACAQTGSGK 348
Query: 192 TLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251
T A+LLP+ L G+ + ++ P+A+V+ T E A Q F
Sbjct: 349 TAAFLLPV--------------LTGMMNNGLTGSSFSVVQ--EPQALVVAPTRELAVQIF 392
Query: 252 HMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
AK +H L + GG S L +V +++ TP ++ I VS + ++
Sbjct: 393 TDAKRFTHGTMLRPVVLYGGTSLGHQLRNVEQG-AHIVVGTPGRLIDVIGKGKVSLEKLK 451
Query: 311 YVVLDEADTLFDRGFGPEISKILNPL 336
Y++LDEAD + D GFGPEI KI++ L
Sbjct: 452 YLILDEADRMLDMGFGPEIKKIVHEL 477
>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 590
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 42/227 (18%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLL 197
E +F+ELGL ++KA+++MG PS IQ GIPAVL G V+ + +G+G+T A+ +
Sbjct: 4 ETFQTFEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGI 63
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-----GFH 252
P+++ ++D + +A++LC T E A Q G
Sbjct: 64 PVLE---RIDTSSNA----------------------VQALILCPTRELAVQVSEELG-R 97
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
++KF+ R+++ + G + + + + +++ TP V+ H+E R + D++R +
Sbjct: 98 LSKFM-RGVRIEA-IYGGDSIDRQIRSLKKG-VHIVVGTPGRVMDHMERRTLKFDEVRMM 154
Query: 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
VLDEAD + D GF +I IL + + QTIL +A +++
Sbjct: 155 VLDEADEMLDMGFREDIESILADMPEDR--------QTILFSATMSK 193
>gi|339326701|ref|YP_004686394.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338166858|gb|AEI77913.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 656
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 116/237 (48%), Gaps = 27/237 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V S F LGL A +++A+ ++ P+ +Q IPA L G+ +++SS +GSG+T A++LP
Sbjct: 56 VESGFATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLP 115
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDE------ALLPMKPMHPRAIVLCTTEESADQGFH 252
+Q S++ +R ALL + P R + L TE +A G +
Sbjct: 116 AIQRISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPT--RELALQVTEAAAKYGRN 173
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + + CA S+ G K L ++ P +L+ATP +L HI+ + ++ +
Sbjct: 174 LRRIV--CA----SILGGMPYPKQLAALAKMP-DILVATPGRLLDHIDAGRIDLSALQML 226
Query: 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA----IAEMLGEQL 365
V DEAD + D GF +I I+N S QT++ +A IA++ QL
Sbjct: 227 VFDEADRMLDMGFADDIDAIVNATPASR--------QTLMFSATLDARIAQLASRQL 275
>gi|313226956|emb|CBY22101.1| unnamed protein product [Oikopleura dioica]
Length = 664
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 137/282 (48%), Gaps = 37/282 (13%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F+++ + A +I A+++ G+ +P+ IQ GIPA G+ ++ S +GSG+TL++ +PL+
Sbjct: 212 FRDMKIPACLISALKRKGINIPTPIQMQGIPAAFTGRDMIGISFTGSGKTLSFSIPLIM- 270
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH--- 259
+ L++E + V RDE P ++V+C + E A Q H ++++
Sbjct: 271 -AALEQEIEMPFV-------RDEG--------PFSLVICPSRELAKQTGHELEYLADHLD 314
Query: 260 ---CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
++L ++ GG + K DV + +L+ TP ++ ++ + + + +VLDE
Sbjct: 315 AGGFSKLRVAVAIGGTAVKETMDVVKKGVHVLVGTPGRLMDMLQKGMIHLETCKQLVLDE 374
Query: 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376
AD + D GF ++ IL+ K QT+L +A + + + S + N
Sbjct: 375 ADRMVDMGFEEDVRFILSYFKSQR--------QTLLYSATMPMKIKDFAKSALVDPLTVN 426
Query: 377 AGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAP 418
G+ A L + Q + L E+ KVV + L ++P
Sbjct: 427 VGRAGAASLNIRQDIEYVLDEA------KVVTVLQMLQKTSP 462
>gi|417952452|ref|ZP_12595511.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342819268|gb|EGU54114.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 447
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 29/199 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP
Sbjct: 7 FKDLGLDNRLLKNLKHFDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLP---- 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFIS 258
ML + PRA+VL T E A Q + M +S
Sbjct: 63 -----------------MLHKSLKNKAFSAKDPRALVLAPTRELAKQVYGELRSMLGGLS 105
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ A L EN KAL ++ATP + H+E R++ D + +VLDEAD
Sbjct: 106 YDATLIVGGENFNDQVKALRKYPK----FIVATPGRLADHLEHRSLFLDGLETLVLDEAD 161
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF PE+ +I N K
Sbjct: 162 RMLDLGFAPELRRIHNAAK 180
>gi|259907666|ref|YP_002648022.1| ATP-dependent RNA helicase SrmB [Erwinia pyrifoliae Ep1/96]
gi|387870433|ref|YP_005801803.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
gi|224963288|emb|CAX54773.1| ATP-dependent RNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283477516|emb|CAY73432.1| ATP-dependent RNA helicase [Erwinia pyrifoliae DSM 12163]
Length = 442
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
V++F EL L +++++++ G P+ IQ IP L G+ V+ S+ +G+G+T AYLLP
Sbjct: 3 VTTFSELELDESLLQSLQEKGFTRPTAIQAEAIPPALEGRDVLGSAPTGTGKTAAYLLPA 62
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQGFHMAKFIS 258
+Q H L P K P R ++L T E A Q A+ ++
Sbjct: 63 LQ--------HLLDF--------------PRKKSGPPRILILTPTRELAMQVADQARELA 100
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
LD + GGV+ +V + +++AT +LQ+I++ N C + ++LDEAD
Sbjct: 101 KHTHLDIATITGGVAFMNHAEVFSENQDVVVATTGRLLQYIKEENFDCRAVETLILDEAD 160
Query: 319 TLFDRGFGPEISKI 332
+ D GF +I I
Sbjct: 161 RMLDMGFAQDIETI 174
>gi|195355988|ref|XP_002044465.1| GM11962 [Drosophila sechellia]
gi|194131630|gb|EDW53672.1| GM11962 [Drosophila sechellia]
Length = 946
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 24/219 (10%)
Query: 119 QQQLSNIASEREKSSGSN--AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL 176
+QQ+++I E E + N V SF+E L A +I+ +++ G P+ IQ G P L
Sbjct: 214 EQQVADIRRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIAL 273
Query: 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPR 236
+G+ +V + +GSG+TLAY+LP + V+ +G + R E P
Sbjct: 274 SGRDLVGIAQTGSGKTLAYMLPAI-VH-----------IGNQPPIIRGEG--------PI 313
Query: 237 AIVLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
A+VL T E A Q + + H + + + GG S + + ++IATP
Sbjct: 314 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGR 373
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333
++ +E+RN + Y+VLDEAD + D GF P+I KI+
Sbjct: 374 LIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKII 412
>gi|15601523|ref|NP_233154.1| DEAD/DEAH box helicase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121590875|ref|ZP_01678199.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121728661|ref|ZP_01681679.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
V52]
gi|147671636|ref|YP_001215545.1| DEAD/DEAH box helicase [Vibrio cholerae O395]
gi|153818645|ref|ZP_01971312.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
8457]
gi|153820657|ref|ZP_01973324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
B33]
gi|227119721|ref|YP_002821616.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
gi|229506074|ref|ZP_04395583.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229510069|ref|ZP_04399549.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229605606|ref|YP_002876310.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254849928|ref|ZP_05239278.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
gi|255746472|ref|ZP_05420419.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|262152368|ref|ZP_06028501.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
gi|262168609|ref|ZP_06036305.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|360037667|ref|YP_004939429.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|379744177|ref|YP_005335229.1| ATP-dependent RNA helicase [Vibrio cholerae IEC224]
gi|417811718|ref|ZP_12458379.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-49A2]
gi|417816978|ref|ZP_12463608.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HCUF01]
gi|418331464|ref|ZP_12942407.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-06A1]
gi|418337875|ref|ZP_12946770.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-23A1]
gi|418345766|ref|ZP_12950545.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-28A1]
gi|418349549|ref|ZP_12954281.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43A1]
gi|418353657|ref|ZP_12956382.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-61A1]
gi|419826271|ref|ZP_14349774.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1033(6)]
gi|421317251|ref|ZP_15767821.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1032(5)]
gi|421320213|ref|ZP_15770771.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1038(11)]
gi|421324258|ref|ZP_15774785.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1041(14)]
gi|421327226|ref|ZP_15777744.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1042(15)]
gi|421332317|ref|ZP_15782796.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1046(19)]
gi|421335957|ref|ZP_15786420.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1048(21)]
gi|421339697|ref|ZP_15790131.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-20A2]
gi|421346096|ref|ZP_15796480.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-46A1]
gi|422889693|ref|ZP_16932164.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-40A1]
gi|422898602|ref|ZP_16935893.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-48A1]
gi|422904652|ref|ZP_16939545.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-70A1]
gi|422913250|ref|ZP_16947766.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HFU-02]
gi|422927660|ref|ZP_16960605.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-38A1]
gi|423144026|ref|ZP_17131643.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-19A1]
gi|423147721|ref|ZP_17135100.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-21A1]
gi|423151508|ref|ZP_17138740.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-22A1]
gi|423156364|ref|ZP_17143467.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-32A1]
gi|423161924|ref|ZP_17148807.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-33A2]
gi|423163024|ref|ZP_17149849.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-48B2]
gi|423732890|ref|ZP_17706134.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-17A1]
gi|423741184|ref|ZP_17710631.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A2]
gi|423892735|ref|ZP_17726414.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-62A1]
gi|423918993|ref|ZP_17729186.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-77A1]
gi|424000506|ref|ZP_17743616.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-17A2]
gi|424004210|ref|ZP_17747217.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-37A1]
gi|424023197|ref|ZP_17762863.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-62B1]
gi|424026790|ref|ZP_17766403.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-69A1]
gi|424588412|ref|ZP_18027909.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1030(3)]
gi|424593161|ref|ZP_18032521.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1040(13)]
gi|424597090|ref|ZP_18036308.1| ATP-dependent RNA helicase rhlE [Vibrio Cholerae CP1044(17)]
gi|424603914|ref|ZP_18042966.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1047(20)]
gi|424604666|ref|ZP_18043654.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1050(23)]
gi|424608492|ref|ZP_18047371.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-39A1]
gi|424615264|ref|ZP_18053981.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-41A1]
gi|424619115|ref|ZP_18057721.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-42A1]
gi|424620030|ref|ZP_18058579.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-47A1]
gi|424643986|ref|ZP_18081743.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-56A2]
gi|424650773|ref|ZP_18088320.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-57A2]
gi|424654553|ref|ZP_18091872.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-81A2]
gi|440711582|ref|ZP_20892223.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443503560|ref|ZP_21070535.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-64A1]
gi|443507470|ref|ZP_21074249.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-65A1]
gi|443510546|ref|ZP_21077214.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-67A1]
gi|443517090|ref|ZP_21083536.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-68A1]
gi|443520742|ref|ZP_21087075.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-71A1]
gi|443522775|ref|ZP_21089019.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-72A2]
gi|443529675|ref|ZP_21095692.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-7A1]
gi|443533366|ref|ZP_21099313.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-80A1]
gi|443537042|ref|ZP_21102900.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-81A1]
gi|449057894|ref|ZP_21736190.1| ATP-dependent RNA helicase [Vibrio cholerae O1 str. Inaba G4222]
gi|9658191|gb|AAF96666.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121547282|gb|EAX57403.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae 2740-80]
gi|121629072|gb|EAX61518.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
V52]
gi|126510798|gb|EAZ73392.1| putative ATP-dependent RNA helicase RhlE [Vibrio cholerae NCTC
8457]
gi|126521700|gb|EAZ78923.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
B33]
gi|146314019|gb|ABQ18559.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio cholerae
O395]
gi|227015171|gb|ACP11380.1| ATP-dependent RNA helicase, DEAD box family [Vibrio cholerae O395]
gi|229352514|gb|EEO17454.1| ATP-dependent RNA helicase [Vibrio cholerae B33]
gi|229356425|gb|EEO21343.1| ATP-dependent RNA helicase [Vibrio cholerae BX 330286]
gi|229372092|gb|ACQ62514.1| ATP-dependent RNA helicase [Vibrio cholerae MJ-1236]
gi|254845633|gb|EET24047.1| ATP-dependent RNA helicase [Vibrio cholerae MO10]
gi|255736226|gb|EET91624.1| ATP-dependent RNA helicase [Vibrio cholera CIRS 101]
gi|262023138|gb|EEY41843.1| ATP-dependent RNA helicase [Vibrio cholerae RC27]
gi|262030819|gb|EEY49450.1| ATP-dependent RNA helicase [Vibrio cholerae INDRE 91/1]
gi|340040128|gb|EGR01101.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HCUF01]
gi|340044538|gb|EGR05486.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-49A2]
gi|341627818|gb|EGS53112.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-70A1]
gi|341629427|gb|EGS54585.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-48A1]
gi|341629664|gb|EGS54809.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-40A1]
gi|341639204|gb|EGS63828.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HFU-02]
gi|341643281|gb|EGS67575.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-38A1]
gi|356420719|gb|EHH74234.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-06A1]
gi|356424913|gb|EHH78306.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-21A1]
gi|356426301|gb|EHH79617.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-19A1]
gi|356431259|gb|EHH84464.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-23A1]
gi|356435859|gb|EHH89003.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-28A1]
gi|356437178|gb|EHH90284.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-22A1]
gi|356441078|gb|EHH94008.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-33A2]
gi|356441647|gb|EHH94547.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-32A1]
gi|356446411|gb|EHH99211.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-43A1]
gi|356454722|gb|EHI07369.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-61A1]
gi|356457272|gb|EHI09837.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-48B2]
gi|356648821|gb|AET28875.1| ATP-dependent RNA helicase RhlE [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796771|gb|AFC60241.1| ATP-dependent RNA helicase [Vibrio cholerae IEC224]
gi|395919709|gb|EJH30532.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1032(5)]
gi|395922272|gb|EJH33091.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1041(14)]
gi|395925101|gb|EJH35903.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1038(11)]
gi|395931115|gb|EJH41861.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1046(19)]
gi|395934151|gb|EJH44890.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1042(15)]
gi|395935639|gb|EJH46374.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1048(21)]
gi|395941256|gb|EJH51934.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-20A2]
gi|395947623|gb|EJH58278.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-46A1]
gi|395955372|gb|EJH65972.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-42A1]
gi|395963024|gb|EJH73306.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-56A2]
gi|395966623|gb|EJH76739.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-57A2]
gi|395968524|gb|EJH78473.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1030(3)]
gi|395969452|gb|EJH79329.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1047(20)]
gi|395978896|gb|EJH88261.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-47A1]
gi|408006494|gb|EKG44636.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-41A1]
gi|408012583|gb|EKG50359.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-39A1]
gi|408039780|gb|EKG76045.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1040(13)]
gi|408046931|gb|EKG82590.1| ATP-dependent RNA helicase rhlE [Vibrio Cholerae CP1044(17)]
gi|408048587|gb|EKG83985.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae CP1050(23)]
gi|408059363|gb|EKG94129.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-81A2]
gi|408609061|gb|EKK82444.1| DEAD/DEAH box helicase family protein [Vibrio cholerae CP1033(6)]
gi|408616560|gb|EKK89710.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-17A1]
gi|408646952|gb|EKL18511.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-50A2]
gi|408656738|gb|EKL27830.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-62A1]
gi|408661724|gb|EKL32706.1| DEAD/DEAH box helicase family protein [Vibrio cholerae HC-77A1]
gi|408851202|gb|EKL91140.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-37A1]
gi|408851264|gb|EKL91201.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-17A2]
gi|408873673|gb|EKM12867.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-62B1]
gi|408880132|gb|EKM19062.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-69A1]
gi|439973069|gb|ELP49312.1| ATP-dependent RNA helicase [Vibrio cholerae 4260B]
gi|443432081|gb|ELS74616.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-64A1]
gi|443435910|gb|ELS82038.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-65A1]
gi|443440513|gb|ELS90198.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-67A1]
gi|443441601|gb|ELS94968.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-68A1]
gi|443445628|gb|ELT02347.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-71A1]
gi|443451207|gb|ELT11467.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-72A2]
gi|443459245|gb|ELT26639.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-7A1]
gi|443463450|gb|ELT34454.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-80A1]
gi|443467051|gb|ELT41707.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae HC-81A1]
gi|448262851|gb|EMB00098.1| ATP-dependent RNA helicase [Vibrio cholerae O1 str. Inaba G4222]
Length = 422
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196
+E+ +F +LGL + ++ + ++G+ P+ IQ IP VL GK V+ + +G+G+T A+
Sbjct: 2 SELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFG 61
Query: 197 LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256
LPL+Q + I Q +R+ RA+VL T E A Q +
Sbjct: 62 LPLIQRF-------------IEQPWQREA-----NSKEIRALVLVPTRELAQQVLDSLQA 103
Query: 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ L GG S K + + +LIATP +L H +++ + +VLDE
Sbjct: 104 YAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDE 163
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + D GF P++ ++L L
Sbjct: 164 ADRMLDMGFMPDLQRVLRRL 183
>gi|440229962|ref|YP_007343755.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
gi|440051667|gb|AGB81570.1| DNA/RNA helicase, superfamily II [Serratia marcescens FGI94]
Length = 455
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 23/197 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
SF+ LGL AE+++AVE+ G P+ IQ IP VL G+ ++ S+ +G+G+T + LP++Q
Sbjct: 2 SFETLGLNAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP-RAIVLCTTEESADQ-GFHMAKFISH 259
+ S P+K P RA++L T E A Q G +++ + H
Sbjct: 62 LLSSKPS--------------------PVKGRRPVRALILTPTRELAAQIGENVSAYSQH 101
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
RL S + GGVS + +LIATP +L V ++ +VLDEAD
Sbjct: 102 L-RLRSLVVFGGVSINPQMMKLRGGVDILIATPGRLLDLEHQNAVDLSNVEILVLDEADR 160
Query: 320 LFDRGFGPEISKILNPL 336
+ D GF +I ++L L
Sbjct: 161 MLDMGFIHDIRRVLAKL 177
>gi|74147664|dbj|BAE38708.1| unnamed protein product [Mus musculus]
Length = 687
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 27/221 (12%)
Query: 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+FQEL L +I + + + + +Q IP +L G+ ++ S +GSG+TLAY +P+V
Sbjct: 104 AFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 163
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISH 259
Q L +T ++R + P A+VL T E A Q F + K +
Sbjct: 164 Q-----------SLQALTSKIQRSDG--------PYALVLVPTRELALQSFDTVQKLLKP 204
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEAD 318
+ + GG K+ + I +LI+TP ++ HI+ +N+ + IR++++DEAD
Sbjct: 205 FTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNLHFNRIRWLIVDEAD 264
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
+ D GF +I+ ILN A+ + Q Q +L++A + E
Sbjct: 265 RILDLGFEKDITVILN-----AVNAECQKRQNVLLSATLTE 300
>gi|113868657|ref|YP_727146.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
gi|113527433|emb|CAJ93778.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 646
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 15/202 (7%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
V S F LGL A +++A+ ++ P+ +Q IPA L G+ +++SS +GSG+T A++LP
Sbjct: 56 VESGFATLGLDAAILRALSELNYNTPTPVQAQAIPAFLAGRDLLVSSQTGSGKTAAFMLP 115
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDE------ALLPMKPMHPRAIVLCTTEESADQGFH 252
+Q S++ +R ALL + P R + L TE +A G +
Sbjct: 116 AIQRISEMPAPQRATEPAKRMKGKRPRPSPAQPALLVLTPT--RELALQVTEAAAKYGRN 173
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
+ + + CA S+ G K L ++ P +L+ATP +L HI+ + ++ +
Sbjct: 174 LRRIV--CA----SILGGMPYPKQLAALAKMP-DILVATPGRLLDHIDAGRIDLSALQML 226
Query: 313 VLDEADTLFDRGFGPEISKILN 334
V DEAD + D GF +I I+N
Sbjct: 227 VFDEADRMLDMGFADDIDAIVN 248
>gi|391865804|gb|EIT75083.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 928
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 34/241 (14%)
Query: 126 ASEREKSSGSNAEVV---SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVV 182
AS K+S V FQ +GL A ++KA+ + G VP+ IQ IP +++G+ VV
Sbjct: 71 ASANRKASNLKGRTVKKGGGFQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVV 130
Query: 183 LSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242
+ +GSG+T A+++P+++ + H VG R ++L
Sbjct: 131 GMARTGSGKTAAFVIPMIEKL-----KSHSTKVG------------------ARGLILSP 167
Query: 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
+ E A Q + K + L S + GG S + + ++IATP L +
Sbjct: 168 SRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFSLMAGNPDIVIATPGRFLHLKVEM 227
Query: 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362
N+ IRYVV DEAD LF+ GF ++++IL L + QT+L +A + + L
Sbjct: 228 NLDLSSIRYVVFDEADRLFEMGFADQLTEILYGLPANR--------QTLLFSATLPKSLV 279
Query: 363 E 363
E
Sbjct: 280 E 280
>gi|261251481|ref|ZP_05944055.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938354|gb|EEX94342.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 443
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 93/199 (46%), Gaps = 29/199 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP
Sbjct: 3 FKDLGLDNRLLKNLKHFDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTLAFVLP---- 58
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFIS 258
ML + PRA+VL T E A Q + M +S
Sbjct: 59 -----------------MLHKSLKNKAFSAKDPRALVLAPTRELAKQVYGELRSMLGGLS 101
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ A L EN KAL ++ATP + H+E R++ D + +VLDEAD
Sbjct: 102 YDATLIVGGENFNDQVKALRKYPK----FIVATPGRLADHLEHRSLFLDGLETLVLDEAD 157
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF PE+ +I N K
Sbjct: 158 RMLDLGFAPELRRIHNAAK 176
>gi|429462585|ref|YP_007184048.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|429338099|gb|AFZ82522.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
Length = 435
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 101/215 (46%), Gaps = 33/215 (15%)
Query: 129 REKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSG 188
+EK N +++ F GL ++ ++ +G P+ IQ IP +LNG+ V+ ++ +G
Sbjct: 2 KEKRENKNKQIL--FDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTG 59
Query: 189 SGRTLAYLLPLVQ-----VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTT 243
+G+T A++LP++ S HL R ++L T
Sbjct: 60 TGKTAAFVLPIINKILPYANSSTSPARHLL----------------------RVLILVPT 97
Query: 244 EESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIED 301
E A+Q + S L S + GG E+ N +G +L+ATP ++ HIE
Sbjct: 98 RELANQVYDSVVIYSKNTNLRSVVLFGGADHYNQEN--NLKLGCEILVATPGRLIAHIEQ 155
Query: 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336
N+ +I VLDEAD + D GF P+I KI++ L
Sbjct: 156 GNLHLQNIEIFVLDEADRMLDMGFMPDIDKIISKL 190
>gi|302801267|ref|XP_002982390.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
gi|300149982|gb|EFJ16635.1| hypothetical protein SELMODRAFT_116186 [Selaginella moellendorffii]
Length = 577
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 110/204 (53%), Gaps = 23/204 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+++GL +++ +++ G+ P+ IQ G+PA+L+G+ ++ + +GSG+TLA++LPL
Sbjct: 141 IRSFKDMGLPKSVLRKLKEKGVKHPTPIQVQGLPAILSGRDMIGVAFTGSGKTLAFVLPL 200
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFI- 257
+ + L+EE +L G P ++LC + E A Q + +F+
Sbjct: 201 IML--ALEEEEKSRLKGGE---------------GPVGLILCPSRELAKQTLDVIEEFVS 243
Query: 258 ----SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
S C L + + GG ++ + + +++AT + +E + ++ + +Y+
Sbjct: 244 VVNSSRCCHLRAMLCIGGTDMRSQLEAIRRGVHIVVATTGRLNDMLEKKKMNLERCKYLT 303
Query: 314 LDEADTLFDRGFGPEISKILNPLK 337
LDEAD L D GF +I K+++ LK
Sbjct: 304 LDEADRLCDSGFEDDIRKVMDHLK 327
>gi|431892730|gb|ELK03163.1| hypothetical protein PAL_GLEAN10016954 [Pteropus alecto]
Length = 1458
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 126/256 (49%), Gaps = 31/256 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ A +++ ++K G+ P+ IQ GIP +L+G+ ++ + +GSG+TL + LP+
Sbjct: 1016 IKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPV 1075
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E L +R+ P +++C + E A Q + ++
Sbjct: 1076 IMFC--LEQEKRLPFS------KREG---------PYGLIICPSRELARQTHSILEYYCR 1118
Query: 260 CARLDSS------MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
+ DSS + GG+S K + + M++ATP ++ ++ + VS D RY+
Sbjct: 1119 LLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLA 1178
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373
LDEAD + D GF +I I + K GQ QT+L +A + + + S +
Sbjct: 1179 LDEADRMIDMGFEGDIRTIFSYFK-------GQ-RQTLLFSATMPKKIQNFAKSALVKPV 1230
Query: 374 RDNAGKVTAMLLEMDQ 389
N G+ A L++ Q
Sbjct: 1231 TINVGRAGAASLDVIQ 1246
>gi|197335121|ref|YP_002155200.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
gi|423685157|ref|ZP_17659965.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri SR5]
gi|197316611|gb|ACH66058.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri MJ11]
gi|371495658|gb|EHN71253.1| ATP-dependent RNA helicase SrmB [Vibrio fischeri SR5]
Length = 413
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 101/198 (51%), Gaps = 29/198 (14%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
++ +F +L L +++A+E++ P+++Q + IP L GK ++ S+ +G+G++ A+LLP
Sbjct: 1 MIKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTGTGKSAAFLLP 60
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE----SADQGFHMA 254
+Q LD+ RR+ P R ++L T E AD+ +A
Sbjct: 61 ALQ---HLDD-----------FPRRE-------PGPARILILTPTRELAIQVADEARQLA 99
Query: 255 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
K+ H GG+S + D+ +++ATP ++++IE C I ++L
Sbjct: 100 KYTRH----KVFTITGGISYQDHADILATTQDIVVATPGRLMEYIEAERFDCRAIETLIL 155
Query: 315 DEADTLFDRGFGPEISKI 332
DEAD + D GFGP + ++
Sbjct: 156 DEADRMLDMGFGPVVDRL 173
>gi|195565659|ref|XP_002106416.1| GD16140 [Drosophila simulans]
gi|194203792|gb|EDX17368.1| GD16140 [Drosophila simulans]
Length = 800
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 24/223 (10%)
Query: 119 QQQLSNIASEREKSSGSN--AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL 176
+QQ+++I E E + N V SF+E L A +I+ +++ G P+ IQ G P L
Sbjct: 214 EQQVADIRRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIAL 273
Query: 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPR 236
+G+ +V + +GSG+TLAY+LP + V+ +G + R E P
Sbjct: 274 SGRDLVGIAQTGSGKTLAYMLPAI-VH-----------IGNQPPIIRGEG--------PI 313
Query: 237 AIVLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294
A+VL T E A Q + + H + + + GG S + + ++IATP
Sbjct: 314 ALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGR 373
Query: 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337
++ +E+RN + Y+VLDEAD + D GF P+I KI+ ++
Sbjct: 374 LIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 416
>gi|255261571|ref|ZP_05340913.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
gi|255103906|gb|EET46580.1| putative ATP-dependent RNA helicase RhlE [Thalassiobium sp. R2A62]
Length = 499
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L +++ AVE G P+ IQ IP L G+ V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLNLDRKVLSAVEDAGYTEPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ ML+R A M PR++VL T E A Q +
Sbjct: 61 IS------------------MLKRGRARARM----PRSLVLAPTRELAAQVAENFDVYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+L ++ GGVS K + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 NTKLTKALLIGGVSFKEQDQLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I
Sbjct: 159 MLDMGFIPDIERIFG 173
>gi|170016030|ref|NP_001101294.2| probable ATP-dependent RNA helicase DDX31 [Rattus norvegicus]
gi|169642287|gb|AAI60917.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Rattus norvegicus]
Length = 682
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 27/221 (12%)
Query: 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+FQEL L +I + + + + +Q IP +L G+ ++ S +GSG+TLAY +P+V
Sbjct: 104 AFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 163
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISH 259
Q L +T ++R + P A+VL T E A Q F + K +
Sbjct: 164 Q-----------SLQALTSKIQRSDG--------PYALVLVPTRELALQSFDTVQKLLKP 204
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEAD 318
+ + GG K+ + I +LI+TP ++ HI+ +N+ + +R++V+DEAD
Sbjct: 205 FTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFNRVRWLVVDEAD 264
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
+ D GF +++ ILN A+ + Q Q +L++A + E
Sbjct: 265 RILDLGFEKDVTVILN-----AVNAECQKRQNVLLSATLTE 300
>gi|429208395|ref|ZP_19199647.1| ATP-dependent RNA helicase [Rhodobacter sp. AKP1]
gi|428188650|gb|EKX57210.1| ATP-dependent RNA helicase [Rhodobacter sp. AKP1]
Length = 508
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++KAV++ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ + + R A +P R++VLC T E A Q +
Sbjct: 61 ITILGK----------------GRARARMP------RSLVLCPTRELAAQVAENFDIYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
++L ++ GGVS + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HSKLSKALLIGGVSFTEQDKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 159 MLDMGFIPDIERIFS 173
>gi|359395366|ref|ZP_09188418.1| ATP-dependent RNA helicase rhlE [Halomonas boliviensis LC1]
gi|357969631|gb|EHJ92078.1| ATP-dependent RNA helicase rhlE [Halomonas boliviensis LC1]
Length = 398
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 103/195 (52%), Gaps = 23/195 (11%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F +LGL +++A+ ++G P+ IQ IPA+L+G ++ ++ +G+G+T A++LPL++
Sbjct: 3 FAKLGLSTPLVQAITELGYKTPTPIQEQAIPAILSGNDLIATAQTGTGKTAAFVLPLLER 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA 261
+S ++ RA++L T E A Q ++A++ H
Sbjct: 63 FSNAG---------------------TLRGKRIRALILVPTRELAVQVEANVAQYAKHT- 100
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L S GGV ++A ++ + +L+ATP +L R + D+++ +VLDEAD +
Sbjct: 101 HLTSMAMYGGVDTEAQKERLIKGVDILVATPGRLLDLAHQRALHFDELKVMVLDEADRMV 160
Query: 322 DRGFGPEISKILNPL 336
D GF +I KI+ L
Sbjct: 161 DMGFVDDIHKIIERL 175
>gi|71033403|ref|XP_766343.1| DEAD box RNA helicase [Theileria parva strain Muguga]
gi|68353300|gb|EAN34060.1| DEAD box RNA helicase, putative [Theileria parva]
Length = 663
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 139/305 (45%), Gaps = 51/305 (16%)
Query: 62 IRPLSTKTTTPTEETQQRVPSKPEKDSFILENFKLRKLNGSAKTNNPENKPSPPQPEQQQ 121
+R LS K T +T+ P++ E+ L N+ NN N+ S P
Sbjct: 16 LRTLSYKFQNVTHDTKTH-PNRKER----LINY-----------NNTGNRDSDP------ 53
Query: 122 LSNIASEREKSSGSNAEVVSSFQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK 179
+ S+ E + ++ VS F E L ++K++E G + IQ IP VLNG
Sbjct: 54 ---VCSKYEHTPSDSSTFVSDFSEFSGILNTRLLKSLEANGFVKITHIQRCSIPKVLNGA 110
Query: 180 SVVLSSGSGSGRTLAYLLPLVQ-VYSQLDEEHHLQLVGITQMLRRD-EALLPMKPMHPRA 237
+ ++ S SG+G+TL +++P +Q + + D + ++ RRD +L + P +
Sbjct: 111 TTLIRSPSGTGKTLTFIVPALQRLIAPPDNK---------KITRRDGTKILIITPTRELS 161
Query: 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297
+ E + F + C + GG S K+ + I ++I TP VL
Sbjct: 162 FQISKVTEDLSKPF--PWIVVSCIK-------GGESRKSEKARIRKGITVVIGTPGRVLD 212
Query: 298 HIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN--GQGFQTILVT 354
H+E + D++ +VLDEAD L D GF +I I + L DS KSN G Q +L +
Sbjct: 213 HMESTSSFKLDNLEMLVLDEADRLLDMGFESKIRTIHSYLLDSK-KSNRENSGIQIVLTS 271
Query: 355 AAIAE 359
A I E
Sbjct: 272 ATITE 276
>gi|156543608|ref|XP_001604318.1| PREDICTED: ATP-dependent RNA helicase abstrakt [Nasonia
vitripennis]
Length = 594
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 102/201 (50%), Gaps = 23/201 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIPAVL+G+ ++ + +GSG+TL ++LPL
Sbjct: 178 LRSFKEMKFHKGILLGLEQKGITKPTPIQVQGIPAVLSGRDIIGIAFTGSGKTLVFVLPL 237
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS- 258
+ L++E + R+E P +++C + E A Q + + + +
Sbjct: 238 IMFC--LEQE-------VALPFGRNEG--------PYGLIICPSRELAKQTYDIIQHYTN 280
Query: 259 -----HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
HC + + GGV DV + + +++ATP ++ ++ + V RY+
Sbjct: 281 SLRHHHCPEIRCCLAIGGVPVSESLDVISRGVHIMVATPGRLMDMLDKKMVKLGVCRYLC 340
Query: 314 LDEADTLFDRGFGPEISKILN 334
+DEAD + D GF ++ I +
Sbjct: 341 MDEADRMIDMGFEEDVRTIFS 361
>gi|146278024|ref|YP_001168183.1| DEAD/DEAH box helicase domain-containing protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145556265|gb|ABP70878.1| DEAD/DEAH box helicase domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 507
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++KAV++ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ + + R A +P R++VLC T E A Q +
Sbjct: 61 ITILGK----------------GRARARMP------RSLVLCPTRELAAQVAENFDIYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
++L ++ GGVS + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HSKLSKALLIGGVSFTEQDKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 159 MLDMGFIPDIERIFS 173
>gi|149039175|gb|EDL93395.1| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 (predicted) [Rattus
norvegicus]
Length = 682
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 27/221 (12%)
Query: 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200
+FQEL L +I + + + + +Q IP +L G+ ++ S +GSG+TLAY +P+V
Sbjct: 104 AFQELDLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKTLAYCIPVV 163
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISH 259
Q L +T ++R + P A+VL T E A Q F + K +
Sbjct: 164 Q-----------SLQALTSKIQRSDG--------PYALVLVPTRELALQSFDTVQKLLKP 204
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEAD 318
+ + GG K+ + I +LI+TP ++ HI+ +N+ + +R++V+DEAD
Sbjct: 205 FTWIVPGVLMGGEKRKSEKARLRKGINILISTPGRLVDHIKSTKNIHFNRVRWLVVDEAD 264
Query: 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
+ D GF +++ ILN A+ + Q Q +L++A + E
Sbjct: 265 RILDLGFEKDVTVILN-----AVNAECQKRQNVLLSATLTE 300
>gi|441506222|ref|ZP_20988197.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441426010|gb|ELR63497.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 428
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 8/198 (4%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ- 201
FQ LGL++ ++ V +G P+ +Q IP VL G ++ + +G+G+T A+ LP++Q
Sbjct: 3 FQALGLQSPLVDTVNALGFTEPTPVQKQAIPQVLAGHDIMAGAQTGTGKTAAFALPVLQC 62
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ +Q E ++ ++ R D A + + RA++L T E A Q + S
Sbjct: 63 LLAQPKPEVSVE--AQSEESRDDRANIQI-----RALILTPTRELAQQVYDSVTEYSKAT 115
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ +++ GG S K + + +L+ATP +L H V + Y VLDEAD +
Sbjct: 116 PVKTAVAYGGTSMKVQVNAIRSGADILVATPGRLLDHAYVGTVDLSKVEYFVLDEADRML 175
Query: 322 DRGFGPEISKILNPLKDS 339
D GF +I +++ +K S
Sbjct: 176 DMGFIDDIKRVMKRMKSS 193
>gi|77463091|ref|YP_352595.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
gi|77387509|gb|ABA78694.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides 2.4.1]
Length = 518
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 22/196 (11%)
Query: 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLP 198
+++ F +L L ++KAV++ G P+ IQ IP L GK V+ + +G+G+T ++ LP
Sbjct: 2 LMTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLP 61
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
++ + + R A +P R++VLC T E A Q +
Sbjct: 62 MITILGK----------------GRARARMP------RSLVLCPTRELAAQVAENFDIYA 99
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
++L ++ GGVS + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 100 KHSKLSKALLIGGVSFTEQDKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEAD 159
Query: 319 TLFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 160 RMLDMGFIPDIERIFS 175
>gi|417948503|ref|ZP_12591648.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
splendidus ATCC 33789]
gi|342809673|gb|EGU44783.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
splendidus ATCC 33789]
Length = 443
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 95/199 (47%), Gaps = 29/199 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP++
Sbjct: 3 FKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFVLPMIH- 61
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFIS 258
+ + RD PR ++L T E A Q + M +S
Sbjct: 62 ----------KALKTKAFSARD----------PRGVILAPTRELAKQVYGELRSMLGGLS 101
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ A L EN KAL ++ATP + H+E R++ D + ++LDEAD
Sbjct: 102 YEATLILGGENFNDQVKALRKYPR----FIVATPGRLADHLEHRSLFLDGVETLILDEAD 157
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF PE+ +I N K
Sbjct: 158 RMLDLGFAPELRRIANAAK 176
>gi|328783258|ref|XP_392069.4| PREDICTED: ATP-dependent RNA helicase abstrakt isoform 1 [Apis
mellifera]
Length = 621
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 179 LKSFKEMKFHRGILNGLEQKGIVKPTPIQIQGIPTVLSGRDMIGIAFTGSGKTLVFVLPI 238
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E + V R+E P +++C + E A Q + + + ++
Sbjct: 239 IMFC--LEQEVAMPFV-------RNEG--------PYGLIICPSRELAKQTYDIIRHYTN 281
Query: 260 ------CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
C + S + GGV +V N + +++ATP ++ ++ + V RY+
Sbjct: 282 SLRQAGCPEIRSCLAIGGVPVSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLC 341
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+DEAD + D GF ++ I + + GQ QT+L +A +
Sbjct: 342 MDEADRMIDMGFEEDVRTIFSFFR-------GQR-QTLLFSATM 377
>gi|258620256|ref|ZP_05715295.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM573]
gi|258623978|ref|ZP_05718931.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM603]
gi|424809155|ref|ZP_18234540.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
SX-4]
gi|258583772|gb|EEW08568.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM603]
gi|258587614|gb|EEW12324.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
VM573]
gi|342323580|gb|EGU19364.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Vibrio mimicus
SX-4]
Length = 422
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201
+F +LGL ++ + +G+ P+ IQ IP VL GK V+ + +G+G+T A+ LPL+Q
Sbjct: 7 TFSQLGLDPHLLNTLSDLGIVNPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ I Q R+E RA+VL T E A Q + +
Sbjct: 67 RF-------------IEQPWVREE-----NSKEIRALVLVPTRELAQQVLDSMQAYAKGT 108
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
L GG S K + + +LIATP +L H +++ + +VLDEAD +
Sbjct: 109 ELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRML 168
Query: 322 DRGFGPEISKILNPL 336
D GF P++ ++L L
Sbjct: 169 DMGFMPDLQRVLRRL 183
>gi|424856580|ref|ZP_18280788.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase, partial
[Rhodococcus opacus PD630]
gi|356662715|gb|EHI42894.1| LOW QUALITY PROTEIN: ATP-dependent RNA helicase, partial
[Rhodococcus opacus PD630]
Length = 397
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 100/200 (50%), Gaps = 22/200 (11%)
Query: 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194
S A V ++F ELGL A M A+ + G+ P IQ IP VL G+ V+ + +GSG+TLA
Sbjct: 8 SPAPVGATFLELGLPAVMTHALARSGIGAPFPIQAATIPDVLAGRDVLGRAPTGSGKTLA 67
Query: 195 YLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 254
+ LP++ ++L G RR PR IVL T E A Q
Sbjct: 68 FGLPML-----------VRLKGAAS--RRG---------FPRGIVLVPTRELALQIERAL 105
Query: 255 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ L + GG+ K ++ + + +LIATP + H+ +VS DD+ + L
Sbjct: 106 DEPALSVGLRVANVVGGIPIKRQVEILSRGVDLLIATPGRLADHVAQGSVSLDDVTVLTL 165
Query: 315 DEADTLFDRGFGPEISKILN 334
DEAD + D GF P+++ IL+
Sbjct: 166 DEADHMADLGFMPQVTTILD 185
>gi|340725455|ref|XP_003401085.1| PREDICTED: ATP-dependent RNA helicase abstrakt-like [Bombus
terrestris]
Length = 625
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 31/224 (13%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
+ SF+E+ ++ +E+ G+ P+ IQ GIP VL+G+ ++ + +GSG+TL ++LP+
Sbjct: 183 LKSFKEMKFHRGILNGLEQKGIVKPTPIQVQGIPTVLSGRDMIGIAFTGSGKTLVFVLPI 242
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ L++E + V R+E P +++C + E A Q + + + ++
Sbjct: 243 IMFC--LEQEVAMPFV-------RNEG--------PYGLIICPSRELAKQTYDIIRHYTN 285
Query: 260 ------CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313
C + S + GGV +V N + +++ATP ++ ++ + V RY+
Sbjct: 286 TLRQAGCPEIRSCLAIGGVPVSESLEVINKGVHIMVATPGRLMDMLDKKMVKLSVCRYLC 345
Query: 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
+DEAD + D GF ++ I + + GQ QT+L +A +
Sbjct: 346 MDEADRMIDMGFEEDVRTIFSFFR-------GQR-QTLLFSATM 381
>gi|343500285|ref|ZP_08738181.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|418480788|ref|ZP_13049843.1| ATP-dependent RNA helicase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820664|gb|EGU55482.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|384571548|gb|EIF02079.1| ATP-dependent RNA helicase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 447
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 29/199 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQV 202
F++LGL ++K ++ +EIQ IP + GK ++ SS +GSG+TLA++LP
Sbjct: 7 FKDLGLDNRLLKNLKHFDFKKATEIQQRAIPVAIAGKDLLASSKTGSGKTLAFVLP---- 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAKFIS 258
ML + PRA++L T E A Q + M +S
Sbjct: 63 -----------------MLHKSLKNKAFSAKDPRAVILAPTRELAKQVYGELRSMLGGLS 105
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ A L EN KAL ++ATP + H+E R++ D + +VLDEAD
Sbjct: 106 YDATLIVGGENFNDQVKALRRYPK----FIVATPGRLADHLEHRSLFLDGLETLVLDEAD 161
Query: 319 TLFDRGFGPEISKILNPLK 337
+ D GF PE+ +I N K
Sbjct: 162 RMLDLGFAPELRRIHNAAK 180
>gi|169773155|ref|XP_001821046.1| ATP-dependent RNA helicase DBP10 [Aspergillus oryzae RIB40]
gi|238491104|ref|XP_002376789.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
NRRL3357]
gi|91208275|sp|Q2UHC1.1|DBP10_ASPOR RecName: Full=ATP-dependent RNA helicase dbp10
gi|83768907|dbj|BAE59044.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697202|gb|EED53543.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
NRRL3357]
Length = 929
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 113/241 (46%), Gaps = 34/241 (14%)
Query: 126 ASEREKSSGSNAEVV---SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVV 182
AS K+S V FQ +GL A ++KA+ + G VP+ IQ IP +++G+ VV
Sbjct: 71 ASANRKASNLKGRTVKKGGGFQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVV 130
Query: 183 LSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242
+ +GSG+T A+++P+++ + H VG R ++L
Sbjct: 131 GMARTGSGKTAAFVIPMIEKL-----KSHSTKVG------------------ARGLILSP 167
Query: 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
+ E A Q + K + L S + GG S + + ++IATP L +
Sbjct: 168 SRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFSLMAGNPDIVIATPGRFLHLKVEM 227
Query: 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362
N+ IRYVV DEAD LF+ GF ++++IL L + QT+L +A + + L
Sbjct: 228 NLDLSSIRYVVFDEADRLFEMGFADQLTEILYGLPANR--------QTLLFSATLPKSLV 279
Query: 363 E 363
E
Sbjct: 280 E 280
>gi|332557965|ref|ZP_08412287.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
gi|332275677|gb|EGJ20992.1| ATP-dependent helicase, DEAD-box [Rhodobacter sphaeroides WS8N]
Length = 516
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPL 199
++ F +L L ++KAV++ G P+ IQ IP L GK V+ + +G+G+T ++ LP+
Sbjct: 1 MTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQTGTGKTASFTLPM 60
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+ + L + A M PR++VLC T E A Q +
Sbjct: 61 ITI------------------LGKGRARARM----PRSLVLCPTRELAAQVAENFDIYAK 98
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
++L ++ GGVS + + + + +LIATP +L H E + ++ +V+DEAD
Sbjct: 99 HSKLSKALLIGGVSFTEQDKLIDRGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADR 158
Query: 320 LFDRGFGPEISKILN 334
+ D GF P+I +I +
Sbjct: 159 MLDMGFIPDIERIFS 173
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.128 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,097,138,538
Number of Sequences: 23463169
Number of extensions: 250812101
Number of successful extensions: 857797
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 21904
Number of HSP's successfully gapped in prelim test: 3892
Number of HSP's that attempted gapping in prelim test: 805520
Number of HSP's gapped (non-prelim): 32175
length of query: 420
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 275
effective length of database: 8,957,035,862
effective search space: 2463184862050
effective search space used: 2463184862050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 78 (34.7 bits)