BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014666
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 21/205 (10%)
Query: 131 KSSGSNA-EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
K +GS+ + + F L+ +I V K G +P+ IQ IP + +G+ ++
Sbjct: 45 KVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGS 104
Query: 190 XRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
+T A+LLP++ L++ H L+L P+ +++ T E A Q
Sbjct: 105 GKTAAFLLPILS--KLLEDPHELEL------------------GRPQVVIVSPTRELAIQ 144
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
F+ A+ + + L + GG S + + ++IATP +L ++ ++ +D
Sbjct: 145 IFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDT 204
Query: 310 RYVVLDEADTLFDRGFGPEISKILN 334
R+VVLDEAD + D GF ++ +I+
Sbjct: 205 RFVVLDEADRMLDMGFSEDMRRIMT 229
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 101/223 (45%), Gaps = 20/223 (8%)
Query: 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLA 194
S V+ +F EL L + + P+ IQ IPA+L + ++ +T A
Sbjct: 17 SATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAA 76
Query: 195 YLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 254
+L+P++ +HL + Q A +P+ ++L T E A Q +
Sbjct: 77 FLIPII---------NHLVCQDLNQQRYSKTA-------YPKCLILAPTRELAIQILSES 120
Query: 255 KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314
+ S L S + GG + + +L+ATP ++ IE +S + +Y+VL
Sbjct: 121 QKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180
Query: 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357
DEAD + D GF P+I KI +++S + S G QT++ +A
Sbjct: 181 DEADRMLDMGFEPQIRKI---IEESNMPS-GINRQTLMFSATF 219
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP- 198
V +F E A ++ + + P+ IQ G P L+G +V +TL+YLLP
Sbjct: 28 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA 87
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+V + Q L R + P +VL T E A Q +A
Sbjct: 88 IVHINHQ-------------PFLERGDG--------PICLVLAPTRELAQQVQQVAAEYC 126
Query: 259 HCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
RL S+ GG + D+ + + IATP ++ +E + Y+VLDEA
Sbjct: 127 RACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 185
Query: 318 DTLFDRGFGPEISKILNPLK 337
D + D GF P+I KI++ ++
Sbjct: 186 DRMLDMGFEPQIRKIVDQIR 205
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP- 198
V +F E A ++ + + P+ IQ G P L+G +V +TL+YLLP
Sbjct: 42 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPA 101
Query: 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258
+V + Q L R + P +VL T E A Q +A
Sbjct: 102 IVHINHQ-------------PFLERGDG--------PICLVLAPTRELAQQVQQVAAEYC 140
Query: 259 HCARLDSSMENGGV-SSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
RL S+ GG + D+ + + IATP ++ +E + Y+VLDEA
Sbjct: 141 RACRLKSTCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 199
Query: 318 DTLFDRGFGPEISKILNPLK 337
D + D GF P+I KI++ ++
Sbjct: 200 DRMLDMGFEPQIRKIVDQIR 219
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 102/208 (49%), Gaps = 16/208 (7%)
Query: 131 KSSGSNAEV-VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
+++G+N + SF ++ + ++ +E P+ +Q IP + + ++
Sbjct: 4 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGS 63
Query: 190 XRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLR--RDEALLPMKPMHPRAIVLCTTEES 246
+T A+LLP++ Q+YS G + LR ++ + +P ++VL T E
Sbjct: 64 GKTAAFLLPILSQIYSD----------GPGEALRAMKENGRYGRRKQYPISLVLAPTREL 113
Query: 247 ADQGFHMAKFISHCARLDSSMENGGVS-SKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305
A Q + A+ S+ +R+ + GG + + D+ +L+ATP ++ +E +
Sbjct: 114 AVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIG 172
Query: 306 CDDIRYVVLDEADTLFDRGFGPEISKIL 333
D +Y+VLDEAD + D GF P+I +I+
Sbjct: 173 LDFCKYLVLDEADRMLDMGFEPQIRRIV 200
>pdb|2DYD|A Chain A, Solution Structure Of The Pabc Domain From Triticum
Aevestium Poly(A)-Binding Protein
Length = 85
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 38/54 (70%)
Query: 360 MLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
MLGE L L++ LE D A KVT MLLEMDQ EV L ES DALK KV EAM+ L
Sbjct: 25 MLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVL 78
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 26/197 (13%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E +F++LG+ + +A +++G P++IQ IP L G+ ++ +T A+ L
Sbjct: 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFAL 99
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
P++ ALL P A+VL T E A Q + +
Sbjct: 100 PILN------------------------ALLE-TPQRLFALVLTPTRELAFQISEQFEAL 134
Query: 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDE 316
+ S++ GG+ S + ++IATP ++ H+E+ + + ++Y+V+DE
Sbjct: 135 GSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194
Query: 317 ADTLFDRGFGPEISKIL 333
AD + + F E+ KIL
Sbjct: 195 ADRILNMDFETEVDKIL 211
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 23/192 (11%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+FQ+ +++K++ ++G+ P+ IQ P +L G +++ +TL+YL+P
Sbjct: 24 AFQQY---PDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMP--- 77
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
+ LD + I++ R +L + P R + L E + + K I
Sbjct: 78 GFIHLDSQP------ISREQRNGPGMLVLTPT--RELALHVEAECSKYSYKGLKSIC--- 126
Query: 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321
+ G + +ED+S + ++IATP + + +V+ I Y+V+DEAD +
Sbjct: 127 -----IYGGRNRNGQIEDISKG-VDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKML 180
Query: 322 DRGFGPEISKIL 333
D F P+I KIL
Sbjct: 181 DMEFEPQIRKIL 192
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 32/196 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK-SVVLXXXXXXXRTLAYLLPLV 200
+F EL L ++ A+ G P++IQ IP LN + ++V +T ++ +PL+
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEES--ADQGFHMAKFIS 258
++ ++E + ++ + +T P AI + ES ++ +AK
Sbjct: 67 EL---VNENNGIEAIILT-------------PTRELAIQVADEIESLKGNKNLKIAK--- 107
Query: 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318
+ G ++ + NA I ++ TP +L HI ++ +++Y +LDEAD
Sbjct: 108 --------IYGGKAIYPQIKALKNANI--VVGTPGRILDHINRGTLNLKNVKYFILDEAD 157
Query: 319 TLFDRGFGPEISKILN 334
+ GF ++ KILN
Sbjct: 158 EXLNXGFIKDVEKILN 173
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 28/194 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F++ LK E+++A+ GL P+ IQ +P L GK ++ +TLA+ LP+ +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA 261
+ E PRA+VL T E A Q + H
Sbjct: 63 LAPSQERGR----------------------KPRALVLTPTRELALQVASELTAVAPHLK 100
Query: 262 RLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ G G +AL ++A ++ATP L ++ + + VLDEAD +
Sbjct: 101 VVAVYGGTGYGKQKEALLRGADA----VVATPGRALDYLRQGVLDLSRVEVAVLDEADEM 156
Query: 321 FDRGFGPEISKILN 334
GF E+ +L+
Sbjct: 157 LSMGFEEEVEALLS 170
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 34/188 (18%)
Query: 153 IKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQVYSQLDEEHHL 212
+KA+++MG +EIQ I +L G+ ++ +TLA+L+P V++
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVEL---------- 115
Query: 213 QLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK-FISHCARLDSSMENGG 271
+V + M R +L + P T E A Q F + K ++H + G
Sbjct: 116 -IVKLRFMPRNGTGVLILSP----------TRELAMQTFGVLKELMTHHVHTYGLIMGGS 164
Query: 272 VSSKALEDVSNAPIGMLIATPSEVLQHIED------RNVSCDDIRYVVLDEADTLFDRGF 325
S + + N I +++ATP +L H+++ +N+ C +V+DEAD + D GF
Sbjct: 165 NRSAEAQKLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQC-----LVIDEADRILDVGF 218
Query: 326 GPEISKIL 333
E+ +I+
Sbjct: 219 EEELKQII 226
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 28/194 (14%)
Query: 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQV 202
F++ LK E+++A+ GL P+ I+ +P L GK ++ +TLA+ LP+ +
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 203 YSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFISHCA 261
+ E PRA+VL T E A Q + H
Sbjct: 63 LAPSQERGR----------------------KPRALVLTPTRELALQVASELTAVAPHLK 100
Query: 262 RLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320
+ G G +AL ++A ++ATP L ++ + + VLDEAD +
Sbjct: 101 VVAVYGGTGYGKQKEALLRGADA----VVATPGRALDYLRQGVLDLSRVEVAVLDEADEM 156
Query: 321 FDRGFGPEISKILN 334
GF E+ +L+
Sbjct: 157 LSMGFEEEVEALLS 170
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 27/204 (13%)
Query: 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAY 195
N ++ F + L + +K +++ + +EIQ I L GK V+ +TLA+
Sbjct: 20 NVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAF 79
Query: 196 LLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAK 255
L+P+ L+ + LQ + +++ T E A Q F + +
Sbjct: 80 LVPV------LEALYRLQWTSTDGL---------------GVLIISPTRELAYQTFEVLR 118
Query: 256 FISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVS--CDDIRYV 312
+ + + GG K E ++N I +L+ TP +LQH+ D VS D++ +
Sbjct: 119 KVGKNHDFSAGLIIGGKDLKHEAERINN--INILVCTPGRLLQHM-DETVSFHATDLQML 175
Query: 313 VLDEADTLFDRGFGPEISKILNPL 336
VLDEAD + D GF ++ ++ L
Sbjct: 176 VLDEADRILDMGFADTMNAVIENL 199
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 31/197 (15%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
+ F + +I+A++ + + P+EIQ IP L G+S V +T AYLLP
Sbjct: 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLP-- 61
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISH 259
I + ++ + A + +A++ T E A Q +H K
Sbjct: 62 ----------------IXEKIKPERAEV-------QAVITAPTRELATQIYHETLKITKF 98
Query: 260 CAR----LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315
C + + + G KALE ++ P ++I TP + I ++ + +V+D
Sbjct: 99 CPKDRXIVARCLIGGTDKQKALEKLNVQP-HIVIGTPGRINDFIREQALDVHTAHILVVD 157
Query: 316 EADTLFDRGFGPEISKI 332
EAD D GF ++ +I
Sbjct: 158 EADLXLDXGFITDVDQI 174
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 30/188 (15%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLV 200
+ F++ LK E++ + +MG PS IQ IP L+G+ ++ ++ AYL+PL+
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 201 QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS-H 259
+ +LD L++D +A+V+ T E A Q + +S H
Sbjct: 63 E---RLD-------------LKKDNI---------QAMVIVPTRELALQVSQICIQVSKH 97
Query: 260 CARLDSSMENGGVSSKALEDVS--NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317
GG + + +D+ + + ++IATP +L I+ D ++ +VLDEA
Sbjct: 98 MGGAKVMATTGGTNLR--DDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155
Query: 318 DTLFDRGF 325
D L + F
Sbjct: 156 DKLLSQDF 163
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 29/193 (15%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTL 193
GS + S F++ LK E+++A+ G PSE+Q IP + G V+ +T
Sbjct: 1 GSPGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTA 60
Query: 194 AYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFH 252
++L +Q QL +T + +V+C T E A Q
Sbjct: 61 VFVLATLQ-----------QLEPVTGQVS--------------VLVMCHTRELAFQISKE 95
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDV--SNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
+F + + ++ GG+S K E+V N P +++ TP +L +++++ I+
Sbjct: 96 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP-HIVVGTPGRILALARNKSLNLKHIK 154
Query: 311 YVVLDEADTLFDR 323
+ +LDE D + ++
Sbjct: 155 HFILDECDKMLEQ 167
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 29/193 (15%)
Query: 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTL 193
GS + S F++ LK E+++A+ G PSE+Q IP + G V+ +T
Sbjct: 1 GSPGHMSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTA 60
Query: 194 AYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFH 252
++L +Q QL +T + +V+C T E A Q
Sbjct: 61 VFVLATLQ-----------QLEPVTGQVS--------------VLVMCHTRELAFQISKE 95
Query: 253 MAKFISHCARLDSSMENGGVSSKALEDV--SNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310
+F + + ++ GG+S K E+V N P +++ TP +L +++++ I+
Sbjct: 96 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP-HIVVGTPGRILALARNKSLNLKHIK 154
Query: 311 YVVLDEADTLFDR 323
+ +LDE D + ++
Sbjct: 155 HFILDECDKMLEQ 167
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 82/211 (38%), Gaps = 42/211 (19%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E+V +F ++ LK +++ + G PS IQ I + G V+ +T + +
Sbjct: 27 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-------- 249
++Q QL+ E +A+VL T E A Q
Sbjct: 87 SILQ---QLEIEFK----------------------ETQALVLAPTRELAQQIQKVILAL 121
Query: 250 GFHMAKFISHCARLDSSMENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD 308
G +M C GG + + ++ + +++ TP V + R +S
Sbjct: 122 GDYMGATCHACI--------GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173
Query: 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDS 339
I+ VLDEAD + RGF +I +I L S
Sbjct: 174 IKMFVLDEADEMLSRGFKDQIYEIFQKLNTS 204
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 29/187 (15%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPL 199
+S F++ LK E+++A+ G PSE+Q IP + G V+ +T ++L
Sbjct: 6 MSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 65
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GFHMAKFIS 258
+Q QL +T + +V+C T E A Q +F
Sbjct: 66 LQ-----------QLEPVTGQVS--------------VLVMCHTRELAFQISKEYERFSK 100
Query: 259 HCARLDSSMENGGVSSKALEDV--SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
+ + ++ GG+S K E+V N P +++ TP +L +++++ I++ +LDE
Sbjct: 101 YMPNVKVAVFFGGLSIKKDEEVLKKNCP-HIVVGTPGRILALARNKSLNLKHIKHFILDE 159
Query: 317 ADTLFDR 323
AD + ++
Sbjct: 160 ADKMLEQ 166
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 83/207 (40%), Gaps = 42/207 (20%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
+VV F ++ L ++++ V G PS IQ I ++ G V+ +T + +
Sbjct: 18 KVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-------- 249
+Q R D ++ P+A++L T E A Q
Sbjct: 78 AALQ--------------------RIDTSV-----KAPQALMLAPTRELALQIQKVVMAL 112
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
FHM + C S +E+ ++ L D +++ TP V +I+ R D I
Sbjct: 113 AFHMDIKVHACIGGTSFVED----AEGLRDAQ-----IVVGTPGRVFDNIQRRRFRTDKI 163
Query: 310 RYVVLDEADTLFDRGFGPEISKILNPL 336
+ +LDEAD + GF +I +I L
Sbjct: 164 KMFILDEADEMLSSGFKEQIYQIFTLL 190
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 40/184 (21%)
Query: 154 KAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQVYSQLDEEHHLQ 213
+A+ +MG +E+Q IP +L GK+VV+ +T AY +P+++
Sbjct: 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE------------ 54
Query: 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMEN--G 270
L MK ++V+ T E Q +A I R +D+ + G
Sbjct: 55 --------------LGMK-----SLVVTPTRELTRQ---VASHIRDIGRYMDTKVAEVYG 92
Query: 271 GVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEI 329
G+ KA + V NA I ++ATP +L + V++DEAD +F+ GF +I
Sbjct: 93 GMPYKAQINRVRNADI--VVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDI 150
Query: 330 SKIL 333
IL
Sbjct: 151 KIIL 154
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 53/250 (21%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
E + +V +F +GL+ ++++ + G PS IQ I ++ G+ V+
Sbjct: 27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGT 86
Query: 190 XRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
+T + + ++Q L ++ +A++L T E A Q
Sbjct: 87 GKTATFSISVLQC-------------------------LDIQVRETQALILAPTRELAVQ 121
Query: 250 --------GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHI 299
G +M C GG + ED+ G ++ TP V I
Sbjct: 122 IQKGLLALGDYMNVQCHACI--------GG--TNVGEDIRKLDYGQHVVAGTPGRVFDMI 171
Query: 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
R++ I+ +VLDEAD + ++GF +I + L + Q +L++A +
Sbjct: 172 RRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT--------QVVLISATLPH 223
Query: 360 MLGEQLSSLM 369
+ E + M
Sbjct: 224 EILEMTNKFM 233
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 53/250 (21%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
E + +V +F +GL+ ++++ + G PS IQ I ++ G+ V+
Sbjct: 26 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGT 85
Query: 190 XRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
+T + + ++Q L ++ +A++L T E A Q
Sbjct: 86 GKTATFSISVLQC-------------------------LDIQVRETQALILAPTRELAVQ 120
Query: 250 --------GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHI 299
G +M C GG + ED+ G ++ TP V I
Sbjct: 121 IQKGLLALGDYMNVQCHACI--------GG--TNVGEDIRKLDYGQHVVAGTPGRVFDMI 170
Query: 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
R++ I+ +VLDEAD + ++GF +I + L + Q +L++A +
Sbjct: 171 RRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT--------QVVLISATLPH 222
Query: 360 MLGEQLSSLM 369
+ E + M
Sbjct: 223 EILEMTNKFM 232
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 53/250 (21%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
E + +V +F +GL+ ++++ + G PS IQ I ++ G+ V+
Sbjct: 27 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGT 86
Query: 190 XRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
+T + + ++Q L ++ +A++L T E A Q
Sbjct: 87 GKTATFSISVLQC-------------------------LDIQVRETQALILAPTRELAVQ 121
Query: 250 --------GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHI 299
G +M C GG + ED+ G ++ TP V I
Sbjct: 122 IQKGLLALGDYMNVQCHACI--------GG--TNVGEDIRKLDYGQHVVAGTPGRVFDMI 171
Query: 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
R++ I+ +VLDEAD + ++GF +I + L + Q +L++A +
Sbjct: 172 RRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT--------QVVLISATLPH 223
Query: 360 MLGEQLSSLM 369
+ E + M
Sbjct: 224 EILEMTNKFM 233
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 42/207 (20%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
+VV F ++ L +++ V G PS IQ I ++ G V+ +T + +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-------- 249
+Q R D ++ P+A++L T E A Q
Sbjct: 71 AALQ--------------------RIDTSV-----KAPQALMLAPTRELALQIQKVVMAL 105
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
FHM + C S +E+ ++ L D +++ TP V +I+ R D I
Sbjct: 106 AFHMDIKVHACIGGTSFVED----AEGLRDAQ-----IVVGTPGRVFDNIQRRRFRTDKI 156
Query: 310 RYVVLDEADTLFDRGFGPEISKILNPL 336
+ +LDEAD + GF +I +I L
Sbjct: 157 KMFILDEADEMLSSGFKEQIYQIFTLL 183
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 53/250 (21%)
Query: 130 EKSSGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXX 189
E + +V +F +GL+ ++++ + G PS IQ I ++ G+ V+
Sbjct: 5 EFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGT 64
Query: 190 XRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249
+T + + ++Q L ++ +A++L T E A Q
Sbjct: 65 GKTATFSISVLQC-------------------------LDIQVRETQALILAPTRELAVQ 99
Query: 250 --------GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHI 299
G +M C GG + ED+ G ++ TP V I
Sbjct: 100 IQKGLLALGDYMNVQCHACI--------GG--TNVGEDIRKLDYGQHVVAGTPGRVFDMI 149
Query: 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359
R++ I+ +VLDEAD + ++GF +I + L + Q +L++A +
Sbjct: 150 RRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT--------QVVLISATLPH 201
Query: 360 MLGEQLSSLM 369
+ E + M
Sbjct: 202 EILEMTNKFM 211
>pdb|1G9L|A Chain A, Solution Structure Of The Pabc Domain Of Human Poly(A)
Binding Protein
Length = 144
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
+MLGE+L L++ + AGK+T MLLE+D +E+ + ES ++L+ KV EA+ L
Sbjct: 68 QMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 122
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 30/194 (15%)
Query: 134 GSNAEVVSS-FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRT 192
GS + SS F++ LK E+++A+ G PSE+Q IP + G V+ +T
Sbjct: 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKT 65
Query: 193 LAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-GF 251
++L +Q QL +T + +V+C T E A Q
Sbjct: 66 AVFVLATLQ-----------QLEPVTGQVS--------------VLVMCHTRELAFQISK 100
Query: 252 HMAKFISHCARLDSSMENGGVSSKALEDV--SNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
+F + + ++ GG+S K E+V N P +++ TP +L +++++ I
Sbjct: 101 EYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCP-HIVVGTPGRILALARNKSLNLKHI 159
Query: 310 RYVVLDEADTLFDR 323
++ +LDE D + ++
Sbjct: 160 KHFILDECDKMLEQ 173
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 42/207 (20%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
+VV F ++ L +++ V G PS IQ I ++ G V+ +T + +
Sbjct: 19 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 78
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-------- 249
+Q R D ++ P+A++L T E A Q
Sbjct: 79 AALQ--------------------RIDTSV-----KAPQALMLAPTRELALQIQKVVMAL 113
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
FHM + C S +E+ E + +A I ++ TP V +I+ R D I
Sbjct: 114 AFHMDIKVHACIGGTSFVEDA-------EGLRDAQI--VVGTPGRVFDNIQRRRFRTDKI 164
Query: 310 RYVVLDEADTLFDRGFGPEISKILNPL 336
+ +LDEAD + GF +I +I L
Sbjct: 165 KMFILDEADEMLSSGFKEQIYQIFTLL 191
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 33/200 (16%)
Query: 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLP-L 199
++F++ LK E++ + + G PS IQ IP + G+ ++ +T A+++P L
Sbjct: 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 80
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS- 258
+V +L++ +A+++ T E A Q + + +
Sbjct: 81 EKVKPKLNK--------------------------IQALIMVPTRELALQTSQVVRTLGK 114
Query: 259 HCARLDSSMENGGVSSKALEDVS--NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316
HC + + GG + + +D+ N + +L+ TP VL + D ++DE
Sbjct: 115 HCG-ISCMVTTGGTNLR--DDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171
Query: 317 ADTLFDRGFGPEISKILNPL 336
AD + R F I +IL+ L
Sbjct: 172 ADKMLSRDFKTIIEQILSFL 191
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 42/209 (20%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E+V SF ++ L +++ + G PS IQ I + G V+ +T + +
Sbjct: 37 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 96
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-------- 249
++Q Q++ L +K +A+VL T E A Q
Sbjct: 97 SILQ---QIE--------------------LDLKA--TQALVLAPTRELAQQIQKVVMAL 131
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD 308
G +M C GG + +A ++ + +++ TP V + R +S
Sbjct: 132 GDYMGASCHACI--------GGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183
Query: 309 IRYVVLDEADTLFDRGFGPEISKILNPLK 337
I+ VLDEAD + RGF +I I L
Sbjct: 184 IKMFVLDEADEMLSRGFKDQIYDIFQKLN 212
>pdb|1JGN|A Chain A, Solution Structure Of The C-Terminal Pabc Domain Of Human
Poly(A)-Binding Protein In Complex With The Peptide From
Paip2
pdb|1JH4|A Chain A, Solution Structure Of The C-Terminal Pabc Domain Of Human
Poly(A)-Binding Protein In Complex With The Peptide From
Paip1
Length = 98
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
+MLGE+L L++ + AGK+T MLLE+D +E+ + ES ++L+ KV EA+ L
Sbjct: 22 QMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 76
>pdb|3KUR|A Chain A, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
pdb|3KUR|B Chain B, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
pdb|3KUR|C Chain C, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
pdb|3KUR|D Chain D, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
pdb|3KUR|E Chain E, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
pdb|3KUR|F Chain F, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
pdb|3KUR|G Chain G, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
pdb|3KUR|H Chain H, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
Length = 79
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
+MLGE+L L++ + AGK+T MLLE+D +E+ + ES ++L+ KV EA+ L
Sbjct: 22 QMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 76
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 82/208 (39%), Gaps = 42/208 (20%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E+V SF ++ L +++ + G PS IQ I + G V+ +T + +
Sbjct: 11 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAI 70
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-------- 249
++Q Q++ L +K +A+VL T E A Q
Sbjct: 71 SILQ---QIE--------------------LDLKA--TQALVLAPTRELAQQIQKVVMAL 105
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD 308
G +M C GG + +A ++ + +++ TP V + R +S
Sbjct: 106 GDYMGASCHACI--------GGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 157
Query: 309 IRYVVLDEADTLFDRGFGPEISKILNPL 336
I+ VLDEAD + RGF +I I L
Sbjct: 158 IKMFVLDEADEMLSRGFKDQIYDIFQKL 185
>pdb|2X04|A Chain A, Crystal Structure Of The Pabc-Tnrc6c Complex
pdb|2X04|B Chain B, Crystal Structure Of The Pabc-Tnrc6c Complex
Length = 80
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
+MLGE+L L++ + AGK+T MLLE+D +E+ + ES ++L+ KV EA+ L
Sbjct: 21 QMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 75
>pdb|3KUS|A Chain A, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein In Complex With The Binding Region Of Paip2
pdb|3KUS|B Chain B, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein In Complex With The Binding Region Of Paip2
pdb|3KUT|A Chain A, Crystal Structure Of The Mlle Domain Of Poly(a)-binding
Protein In Complex With The Binding Region Of Paip2
pdb|3KUT|B Chain B, Crystal Structure Of The Mlle Domain Of Poly(a)-binding
Protein In Complex With The Binding Region Of Paip2
pdb|3KTP|A Chain A, Structural Basis Of Gw182 Recognition By Poly(a)-binding
Protein
pdb|3KTR|A Chain A, Structural Basis Of Ataxin-2 Recognition By
Poly(A)-Binding
pdb|3KUI|A Chain A, Crystal Structure Of C-Terminal Domain Of Pabpc1 In
Complex Binding Region Of Erf3a
pdb|3KUJ|A Chain A, Crystal Structure Of C-Terminal Domain Of Pabpc1 In
Complex With Binding Region Of Erf3a
pdb|3PKN|A Chain A, Crystal Structure Of Mlle Domain Of Poly(A) Binding
Protein In Complex With Pam2 Motif Of La-Related Protein
4 (Larp4)
Length = 88
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
+MLGE+L L++ + AGK+T MLLE+D +E+ + ES ++L+ KV EA+ L
Sbjct: 22 QMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 76
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 37/230 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F +GL+ ++++ + G PS IQ I ++ G+ V+ +T + + ++Q
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261
L ++ +A++L T E A Q +
Sbjct: 62 C-------------------------LDIQVRETQALILAPTRELAVQVQKGLLALGDYM 96
Query: 262 RLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
+ S GG + ED+ G ++ TP V I R++ I+ +VLDEAD
Sbjct: 97 NVQSHACIGG--TNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE 154
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369
+ ++GF +I + L + Q +L++A + + E + M
Sbjct: 155 MLNKGFKEQIYDVYRYLPPAT--------QVVLISATLPHEVLEMTNKFM 196
>pdb|3PTH|A Chain A, The Pabc1 Mlle Domain Bound To The Variant Pam2 Motif Of
Larp4b
Length = 82
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
+MLGE+L L++ + AGK+T MLLE+D +E+ + ES ++L+ KV EA+ L
Sbjct: 21 QMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 75
>pdb|2RQG|B Chain B, Structure Of Gspt1ERF3A-Pabc
pdb|2RQH|B Chain B, Structure Of Gspt1ERF3A-Pabc
Length = 83
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%)
Query: 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413
+MLGE+L L++ + AGK+T MLLE+D +E+ + ES ++L+ KV EA+ L
Sbjct: 20 QMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 74
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 92/238 (38%), Gaps = 53/238 (22%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQ 201
+F +GL+ ++++ + G PS IQ I ++ G+ V+ +T + + ++Q
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ--------GFHM 253
L ++ +A++L T E A Q G +M
Sbjct: 62 C-------------------------LDIQVRETQALILAPTRELAVQVQKGLLALGDYM 96
Query: 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIG--MLIATPSEVLQHIEDRNVSCDDIRY 311
C GG + ED+ G ++ TP V I R++ I+
Sbjct: 97 NVQCHACI--------GG--TNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKM 146
Query: 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369
+VLDEAD + ++GF +I + L + Q +L++A + + E + M
Sbjct: 147 LVLDEADEMLNKGFKEQIYDVYRYLPPAT--------QVVLISATLPHEILEMTNKFM 196
>pdb|1NMR|A Chain A, Solution Structure Of C-Terminal Domain From Trypanosoma
Cruzi Poly(A)-Binding Protein
Length = 85
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 339 SALKSNGQGFQTILVTAAIAE---MLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDL 395
S+L S GQ T+L + +LGE+L + + + A KVT MLLEMD E+ +L
Sbjct: 2 SSLASQGQNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNL 61
Query: 396 TESQDALKKKVVEAMDSLH 414
++ L KV EA++ L+
Sbjct: 62 LDTPGLLDAKVQEALEVLN 80
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 46/201 (22%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLXXXXXXXRTLAYLLPL 199
SF ELGL E++K + M PS+IQ +P +L+ ++++ +T A+ L +
Sbjct: 23 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 82
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF----HMAK 255
+ ++++ E P+AI L + E A Q M K
Sbjct: 83 L---TRVNPEDA----------------------SPQAICLAPSRELARQTLEVVQEMGK 117
Query: 256 FISHCARL---DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312
F ++L DS +N ++++ +++ TP VL + + + I+
Sbjct: 118 FTKITSQLIVPDSFEKNKQINAQ-----------VIVGTPGTVLDLMRRKLMQLQKIKIF 166
Query: 313 VLDEADTLFD-RGFGPEISKI 332
VLDEAD + D +G G + ++
Sbjct: 167 VLDEADNMLDQQGLGDQCIRV 187
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 78/207 (37%), Gaps = 42/207 (20%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
+VV F + L +++ V G PS IQ I ++ G V+ +T + +
Sbjct: 18 KVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-------- 249
+Q R D ++ P+A+ L T E A Q
Sbjct: 78 AALQ--------------------RIDTSV-----KAPQALXLAPTRELALQIQKVVXAL 112
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309
FH + C S +E+ ++ L D +++ TP V +I+ R D I
Sbjct: 113 AFHXDIKVHACIGGTSFVED----AEGLRDAQ-----IVVGTPGRVFDNIQRRRFRTDKI 163
Query: 310 RYVVLDEADTLFDRGFGPEISKILNPL 336
+ +LDEAD GF +I +I L
Sbjct: 164 KXFILDEADEXLSSGFKEQIYQIFTLL 190
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLXXXXXXXRTLAYLLPL 199
SF ELGL E++K + M PS+IQ +P +L+ ++++ +T A+ L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+T++ D + P+AI L + E A Q + + +
Sbjct: 66 -----------------LTRVNPEDAS--------PQAICLAPSRELARQTLEVVQEMGK 100
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
++ S + + + E +++ TP VL + + + I+ VLDEAD
Sbjct: 101 FTKITSQL----IVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156
Query: 320 LFD-RGFGPEISKILNPL-KDSAL 341
+ D +G G + ++ L KD+ L
Sbjct: 157 MLDQQGLGDQCIRVKRFLPKDTQL 180
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLXXXXXXXRTLAYLLPL 199
SF ELGL E++K + M PS+IQ +P +L+ ++++ +T A+ L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 200 VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259
+T++ D + P+AI L + E A Q + + +
Sbjct: 66 -----------------LTRVNPEDAS--------PQAICLAPSRELARQTLEVVQEMGK 100
Query: 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319
++ S + + + E +++ TP VL + + + I+ VLDEAD
Sbjct: 101 FTKITSQL----IVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156
Query: 320 LFD-RGFGPEISKILNPL-KDSAL 341
+ D +G G + ++ L KD+ L
Sbjct: 157 MLDQQGLGDQCIRVKRFLPKDTQL 180
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 77/209 (36%), Gaps = 42/209 (20%)
Query: 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLL 197
E+V SF ++ L +++ + G PS IQ I + G V+ T + +
Sbjct: 12 EIVDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAI 71
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ-------- 249
++Q + L L +A+VL T E A Q
Sbjct: 72 SILQ-------QIELDLXA------------------TQALVLAPTRELAQQIQXVVMAL 106
Query: 250 GFHMAKFISHCARLDSSMENGGVSSKA-LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD 308
G +M C GG + +A ++ + +++ TP V + R +S
Sbjct: 107 GDYMGASCHACI--------GGTNVRAEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSPXY 158
Query: 309 IRYVVLDEADTLFDRGFGPEISKILNPLK 337
I VLDEAD + RGF +I I L
Sbjct: 159 IXMFVLDEADEMLSRGFXDQIYDIFQXLN 187
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 107/243 (44%), Gaps = 33/243 (13%)
Query: 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS--VVLXXXXXXXRTLAYLLPLVQ--VY 203
L E+ KA+ +M + +Q I +L+ + V+ +T A+L+P+ Q +
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 204 SQLDEEHHLQLVGITQMLRRDEAL---LPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260
++ D ++ ++ V + RD AL +K +H D + + K+ C
Sbjct: 88 TKFDSQYMVKAVIVAPT--RDLALQIEAEVKKIH-------------DMNYGLKKYA--C 130
Query: 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADT 319
S+ G A+ ++ ++IATP ++ +E N + Y VLDEAD
Sbjct: 131 V----SLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186
Query: 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM---ECLERDN 376
L + GF ++ I L + KS +T+L +A + + + + +++M ECL D
Sbjct: 187 LLEIGFRDDLETISGILNEKNSKS-ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDT 245
Query: 377 AGK 379
K
Sbjct: 246 VDK 248
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 113/261 (43%), Gaps = 34/261 (13%)
Query: 131 KSSGSNAEVVSSFQELG-LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS--VVLXXXX 187
K S + S E G L E+ KA+ +M + +Q I +L+ + V+
Sbjct: 61 KEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKT 120
Query: 188 XXXRTLAYLLPLVQ--VYSQLDEEHHLQLVGITQMLRRDEAL---LPMKPMHPRAIVLCT 242
+T A+L+P+ Q + ++ D ++ ++ V + RD AL +K +H
Sbjct: 121 GTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT--RDLALQIEAEVKKIH-------- 170
Query: 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
D + + K+ C S+ G A+ ++ ++IATP ++ +E
Sbjct: 171 -----DMNYGLKKYA--CV----SLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY 219
Query: 303 -NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
N + Y VLDEAD L + GF ++ I L + KS +T+L +A + + +
Sbjct: 220 SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS-ADNIKTLLFSATLDDKV 278
Query: 362 GEQLSSLM---ECLERDNAGK 379
+ +++M ECL D K
Sbjct: 279 QKLANNIMNKKECLFLDTVDK 299
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 113/261 (43%), Gaps = 34/261 (13%)
Query: 131 KSSGSNAEVVSSFQELG-LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKS--VVLXXXX 187
K S + S E G L E+ KA+ +M + +Q I +L+ + V+
Sbjct: 10 KEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKT 69
Query: 188 XXXRTLAYLLPLVQ--VYSQLDEEHHLQLVGITQMLRRDEAL---LPMKPMHPRAIVLCT 242
+T A+L+P+ Q + ++ D ++ ++ V + RD AL +K +H
Sbjct: 70 GTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT--RDLALQIEAEVKKIH-------- 119
Query: 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302
D + + K+ C S+ G A+ ++ ++IATP ++ +E
Sbjct: 120 -----DMNYGLKKY--ACV----SLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY 168
Query: 303 -NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361
N + Y VLDEAD L + GF ++ I L + KS +T+L +A + + +
Sbjct: 169 SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS-ADNIKTLLFSATLDDKV 227
Query: 362 GEQLSSLM---ECLERDNAGK 379
+ +++M ECL D K
Sbjct: 228 QKLANNIMNKKECLFLDTVDK 248
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 27/184 (14%)
Query: 144 QELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLXXXXXXXRTLAYLLPLVQVY 203
QE + + +++ + G +P+ IQ IP +L+G+ ++ +TLA+ +P++
Sbjct: 32 QEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91
Query: 204 SQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARL 263
Q + RA+++ T E A Q IS
Sbjct: 92 KQPANKGF------------------------RALIISPTRELASQIHRELIKISEGTGF 127
Query: 264 DSSM-ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD--DIRYVVLDEADTL 320
M V++K S+ +L+ TP+ ++ ++ D + ++V+DE+D L
Sbjct: 128 RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKL 187
Query: 321 FDRG 324
F+ G
Sbjct: 188 FEDG 191
>pdb|4IVE|A Chain A, Crystal Structure Of A Polyadenylate-binding Protein 3
(pabpc3) From Homo Sapiens At 2.30 A Resolution
pdb|4IVE|B Chain B, Crystal Structure Of A Polyadenylate-binding Protein 3
(pabpc3) From Homo Sapiens At 2.30 A Resolution
pdb|4IVE|C Chain C, Crystal Structure Of A Polyadenylate-binding Protein 3
(pabpc3) From Homo Sapiens At 2.30 A Resolution
pdb|4IVE|D Chain D, Crystal Structure Of A Polyadenylate-binding Protein 3
(pabpc3) From Homo Sapiens At 2.30 A Resolution
Length = 98
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLH 414
+ LGE+L L++ AGK+T LLE+D +E+ ES ++L+ KV EA+ L
Sbjct: 22 QXLGERLFPLIQAXHPTLAGKITGXLLEIDNSELLYXLESPESLRSKVDEAVAVLQ 77
>pdb|3NTW|A Chain A, Structure Of The Mlle Domain Of Edd In Complex With A Pam2
Peptide From Paip1
pdb|3NTW|C Chain C, Structure Of The Mlle Domain Of Edd In Complex With A Pam2
Peptide From Paip1
Length = 65
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMD 411
+ LGE+L ++ ++ A K+T MLLE+ A++ L S+D+L+ +V EAM+
Sbjct: 8 QALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAME 60
>pdb|1I2T|A Chain A, X-Ray Structure Of The Human Hyperplastic Discs Protein:
An Ortholog Of The C-Terminal Domain Of Poly(A)-Binding
Protein
Length = 61
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMD 411
+ LGE+L ++ ++ A K+T MLLE+ A++ L S+D+L+ +V EAM+
Sbjct: 3 QALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAME 55
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 32/185 (17%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN--GKSVVLXXXXXXXRTLAYLL 197
V SF+EL LK ++++ V MG PS+IQ +P +L ++++ +T A++L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
++ SQ++ + +P+ + L T E A K I
Sbjct: 84 AML---SQVEPANK----------------------YPQCLCLSPTYELA---LQTGKVI 115
Query: 258 SHCARLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLD 315
+ ++ V LE ++I TP VL + + I+ VLD
Sbjct: 116 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175
Query: 316 EADTL 320
EAD +
Sbjct: 176 EADVM 180
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 32/186 (17%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN--GKSVVLXXXXXXXRTLAYLL 197
V SF+EL LK ++++ V MG PS+IQ +P +L ++++ +T A++L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
++ SQ++ + +P+ + L T E A K I
Sbjct: 151 AML---SQVEPANK----------------------YPQCLCLSPTYELA---LQTGKVI 182
Query: 258 SHCARLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLD 315
+ ++ V LE ++I TP VL + + I+ VLD
Sbjct: 183 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242
Query: 316 EADTLF 321
EAD +
Sbjct: 243 EADVMI 248
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 32/185 (17%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN--GKSVVLXXXXXXXRTLAYLL 197
V SF+EL LK ++++ V MG PS+IQ +P +L ++++ +T A++L
Sbjct: 40 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 99
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
++ SQ++ + +P+ + L T E A K I
Sbjct: 100 AML---SQVEPANK----------------------YPQCLCLSPTYELA---LQTGKVI 131
Query: 258 SHCARLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLD 315
+ ++ V LE ++I TP VL + + I+ VLD
Sbjct: 132 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 191
Query: 316 EADTL 320
EAD +
Sbjct: 192 EADVM 196
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED 279
ML R +A +P P+AI L + E A Q + + + ++ G+ ++
Sbjct: 179 MLSRVDASVP----KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAF---GIKD-SVPK 230
Query: 280 VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD-RGFGPEISKI 332
+ ++I TP V+ ++ R + DI+ VLDEAD + D +G G + +I
Sbjct: 231 GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRI 284
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 32/185 (17%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN--GKSVVLXXXXXXXRTLAYLL 197
V SF+EL LK ++++ V MG PS+IQ +P +L ++++ +T A++L
Sbjct: 61 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
++ SQ++ + +P+ + L T E A K I
Sbjct: 121 AML---SQVEPANK----------------------YPQCLCLSPTYELA---LQTGKVI 152
Query: 258 SHCARLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLD 315
+ ++ V LE ++I TP VL + + I+ VLD
Sbjct: 153 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 212
Query: 316 EADTL 320
EAD +
Sbjct: 213 EADVM 217
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 32/185 (17%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN--GKSVVLXXXXXXXRTLAYLL 197
V SF+EL LK ++++ V MG PS+IQ +P +L ++++ +T A++L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
++ SQ++ + +P+ + L T E A Q K I
Sbjct: 84 AML---SQVEPANK----------------------YPQCLCLSPTYELALQ---TGKVI 115
Query: 258 SHCARLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLD 315
+ ++ V LE ++I TP VL + + I+ VLD
Sbjct: 116 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175
Query: 316 EADTL 320
EAD +
Sbjct: 176 EADVM 180
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 32/186 (17%)
Query: 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN--GKSVVLXXXXXXXRTLAYLL 197
V SF+EL LK ++++ V MG PS+IQ +P +L ++++ +T A++L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 198 PLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257
++ SQ++ + +P+ + L T E A K I
Sbjct: 151 AML---SQVEPANK----------------------YPQCLCLSPTYELA---LQTGKVI 182
Query: 258 SHCARLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLD 315
+ ++ V LE ++I TP VL + + I+ VLD
Sbjct: 183 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242
Query: 316 EADTLF 321
EAD +
Sbjct: 243 EADVMI 248
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 289 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQG 347
+ +P + Q IE ++ IR +LDEAD L + G F +I+ I + L S
Sbjct: 147 VGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK------- 199
Query: 348 FQTILVTAAIAEMLGEQLSSLM 369
Q + V+A E L L+ M
Sbjct: 200 -QMLAVSATYPEFLANALTKYM 220
>pdb|1IFW|A Chain A, Solution Structure Of C-Terminal Domain Of Poly(A) Binding
Protein From Saccharomyces Cerevisiae
Length = 92
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 359 EMLGEQLSSLM--ECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEA 409
+ LGEQL + + + AGK+T M+L++ EVF L ES + ++ EA
Sbjct: 22 QALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEA 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,953,128
Number of Sequences: 62578
Number of extensions: 349961
Number of successful extensions: 773
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 70
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)