Query 014666
Match_columns 420
No_of_seqs 318 out of 2427
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 1.3E-48 2.7E-53 388.5 20.9 244 142-414 92-337 (519)
2 KOG0338 ATP-dependent RNA heli 100.0 2E-49 4.4E-54 382.7 13.1 223 140-392 180-403 (691)
3 KOG0330 ATP-dependent RNA heli 100.0 9.4E-48 2E-52 361.1 15.4 228 137-397 57-285 (476)
4 COG0513 SrmB Superfamily II DN 100.0 1E-44 2.2E-49 372.8 22.8 226 141-397 29-257 (513)
5 KOG0339 ATP-dependent RNA heli 100.0 1.2E-44 2.6E-49 349.3 18.6 253 133-415 215-467 (731)
6 KOG0347 RNA helicase [RNA proc 100.0 1E-44 2.2E-49 353.0 18.0 219 133-366 173-395 (731)
7 KOG0333 U5 snRNP-like RNA heli 100.0 5E-43 1.1E-47 339.6 18.5 259 136-413 240-515 (673)
8 KOG0343 RNA Helicase [RNA proc 100.0 4.9E-43 1.1E-47 341.3 15.6 237 137-403 65-305 (758)
9 KOG0341 DEAD-box protein abstr 100.0 1.3E-43 2.8E-48 332.6 9.8 255 134-419 163-423 (610)
10 KOG0345 ATP-dependent RNA heli 100.0 5.8E-42 1.3E-46 328.8 19.4 241 141-415 4-252 (567)
11 KOG0348 ATP-dependent RNA heli 100.0 1.9E-42 4.1E-47 336.2 16.1 222 136-376 131-360 (708)
12 KOG0342 ATP-dependent RNA heli 100.0 7.1E-42 1.5E-46 330.2 16.6 234 135-397 76-314 (543)
13 KOG0335 ATP-dependent RNA heli 100.0 5.9E-42 1.3E-46 335.6 15.7 255 135-411 68-324 (482)
14 KOG0336 ATP-dependent RNA heli 100.0 2E-41 4.3E-46 319.8 16.8 234 136-397 214-448 (629)
15 PTZ00110 helicase; Provisional 100.0 1.2E-40 2.6E-45 345.5 24.2 249 134-413 123-373 (545)
16 PLN00206 DEAD-box ATP-dependen 100.0 6.2E-40 1.4E-44 339.0 24.9 248 135-412 115-362 (518)
17 KOG0328 Predicted ATP-dependen 100.0 7.5E-41 1.6E-45 302.7 14.9 210 135-377 21-230 (400)
18 KOG0346 RNA helicase [RNA proc 100.0 1.7E-40 3.7E-45 316.1 17.5 209 141-376 19-230 (569)
19 PRK04837 ATP-dependent RNA hel 100.0 1.4E-39 3.1E-44 329.5 23.5 217 141-381 8-224 (423)
20 KOG0340 ATP-dependent RNA heli 100.0 1.9E-40 4.2E-45 308.6 15.5 240 139-414 5-250 (442)
21 KOG0334 RNA helicase [RNA proc 100.0 7.9E-40 1.7E-44 340.9 16.3 250 134-413 358-610 (997)
22 PRK10590 ATP-dependent RNA hel 100.0 6.8E-39 1.5E-43 327.0 22.6 210 142-378 2-211 (456)
23 PRK11634 ATP-dependent RNA hel 100.0 9.5E-39 2.1E-43 334.7 23.7 218 140-390 5-223 (629)
24 PRK04537 ATP-dependent RNA hel 100.0 2E-38 4.3E-43 330.2 24.1 214 141-378 9-223 (572)
25 PRK11776 ATP-dependent RNA hel 100.0 1.9E-38 4.1E-43 324.6 22.7 206 140-378 3-209 (460)
26 KOG0326 ATP-dependent RNA heli 100.0 2.2E-39 4.8E-44 297.5 8.3 212 141-385 85-302 (459)
27 PRK11192 ATP-dependent RNA hel 100.0 3.1E-37 6.7E-42 313.5 23.5 209 142-379 2-211 (434)
28 KOG0337 ATP-dependent RNA heli 100.0 1.7E-37 3.6E-42 294.5 14.6 207 140-378 20-226 (529)
29 PRK01297 ATP-dependent RNA hel 100.0 5.7E-36 1.2E-40 307.3 23.9 216 138-377 84-300 (475)
30 KOG0329 ATP-dependent RNA heli 100.0 3.6E-37 7.8E-42 275.2 11.9 241 140-415 41-283 (387)
31 KOG0327 Translation initiation 100.0 4.4E-36 9.5E-41 283.1 12.3 212 135-379 20-232 (397)
32 KOG4284 DEAD box protein [Tran 100.0 1.4E-35 3E-40 293.5 16.1 224 137-394 21-246 (980)
33 PTZ00424 helicase 45; Provisio 100.0 3.5E-34 7.6E-39 288.3 23.5 205 139-376 26-230 (401)
34 cd00268 DEADc DEAD-box helicas 100.0 4E-33 8.6E-38 254.5 21.2 202 143-375 1-202 (203)
35 KOG0350 DEAD-box ATP-dependent 100.0 6E-33 1.3E-37 268.4 14.6 214 138-375 124-388 (620)
36 KOG0332 ATP-dependent RNA heli 100.0 2.3E-32 5E-37 256.1 12.9 229 133-397 82-314 (477)
37 TIGR03817 DECH_helic helicase/ 100.0 1.2E-30 2.6E-35 278.6 21.2 197 147-374 20-220 (742)
38 KOG0344 ATP-dependent RNA heli 100.0 1.2E-31 2.5E-36 265.0 11.4 248 137-416 128-385 (593)
39 PRK02362 ski2-like helicase; P 100.0 4.6E-29 1E-33 268.3 18.5 181 142-359 2-183 (737)
40 PF00270 DEAD: DEAD/DEAH box h 100.0 3.7E-28 8E-33 214.7 18.2 167 165-363 1-168 (169)
41 PRK00254 ski2-like helicase; P 100.0 7.7E-28 1.7E-32 258.3 22.6 188 142-370 2-190 (720)
42 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.4E-27 5.1E-32 250.0 20.1 183 159-377 12-235 (844)
43 PRK13767 ATP-dependent helicas 99.9 2.8E-27 6.2E-32 257.4 19.1 188 148-359 18-219 (876)
44 PRK01172 ski2-like helicase; P 99.9 1.7E-26 3.7E-31 246.7 18.5 186 142-366 2-187 (674)
45 PRK09401 reverse gyrase; Revie 99.9 5.2E-26 1.1E-30 251.1 21.6 205 153-391 70-310 (1176)
46 COG1201 Lhr Lhr-like helicases 99.9 1.4E-25 3E-30 235.5 18.6 197 148-371 8-206 (814)
47 TIGR01054 rgy reverse gyrase. 99.9 2.4E-24 5.2E-29 238.3 21.8 208 150-391 65-308 (1171)
48 KOG0349 Putative DEAD-box RNA 99.9 1.4E-25 3.1E-30 213.9 10.0 144 232-377 284-431 (725)
49 TIGR00614 recQ_fam ATP-depende 99.9 1.4E-24 3.1E-29 222.5 17.5 171 158-369 6-184 (470)
50 PLN03137 ATP-dependent DNA hel 99.9 3.2E-24 7E-29 229.8 18.2 188 142-370 436-639 (1195)
51 PRK14701 reverse gyrase; Provi 99.9 4.2E-24 9.1E-29 240.9 19.1 209 150-392 66-312 (1638)
52 TIGR00580 mfd transcription-re 99.9 3E-23 6.6E-28 224.4 18.6 184 147-377 435-629 (926)
53 PRK10689 transcription-repair 99.9 5E-23 1.1E-27 227.2 18.1 182 150-378 588-779 (1147)
54 COG1205 Distinct helicase fami 99.9 8.9E-23 1.9E-27 219.4 19.4 194 148-370 55-254 (851)
55 PRK11057 ATP-dependent DNA hel 99.9 9.1E-23 2E-27 214.8 18.8 182 147-369 8-196 (607)
56 TIGR01389 recQ ATP-dependent D 99.9 8.4E-23 1.8E-27 215.2 17.9 175 155-370 4-185 (591)
57 PRK12899 secA preprotein trans 99.9 3.1E-23 6.8E-28 218.2 14.2 149 144-322 65-229 (970)
58 PRK10917 ATP-dependent DNA hel 99.9 9E-22 1.9E-26 209.5 20.5 164 153-363 252-425 (681)
59 COG1204 Superfamily II helicas 99.9 5.3E-22 1.1E-26 210.8 18.1 191 146-373 14-205 (766)
60 TIGR00643 recG ATP-dependent D 99.9 1.1E-21 2.3E-26 207.5 18.3 169 150-362 223-401 (630)
61 PRK09751 putative ATP-dependen 99.9 1.2E-21 2.7E-26 217.7 15.1 166 183-369 1-179 (1490)
62 KOG0952 DNA/RNA helicase MER3/ 99.9 1.6E-21 3.4E-26 203.2 14.3 191 156-371 103-298 (1230)
63 COG1202 Superfamily II helicas 99.9 1.5E-21 3.2E-26 192.5 12.7 217 140-390 193-417 (830)
64 PHA02653 RNA helicase NPH-II; 99.9 3.7E-21 8E-26 201.8 15.3 174 165-378 166-351 (675)
65 smart00487 DEXDc DEAD-like hel 99.8 7E-20 1.5E-24 164.5 17.6 187 158-378 3-191 (201)
66 TIGR01970 DEAH_box_HrpB ATP-de 99.8 1.3E-19 2.8E-24 194.4 19.3 163 167-375 6-171 (819)
67 PRK11664 ATP-dependent RNA hel 99.8 2.1E-19 4.6E-24 193.1 19.0 162 168-375 10-174 (812)
68 PHA02558 uvsW UvsW helicase; P 99.8 5.1E-19 1.1E-23 182.6 15.1 150 162-360 113-262 (501)
69 TIGR03158 cas3_cyano CRISPR-as 99.8 3.1E-18 6.8E-23 169.4 19.5 163 167-368 1-202 (357)
70 COG1111 MPH1 ERCC4-like helica 99.8 6.8E-18 1.5E-22 165.5 17.8 213 162-412 14-234 (542)
71 TIGR01587 cas3_core CRISPR-ass 99.8 1.1E-18 2.3E-23 173.2 11.8 155 180-371 1-179 (358)
72 TIGR00963 secA preprotein tran 99.8 1.7E-18 3.7E-23 180.5 12.4 130 159-322 53-190 (745)
73 KOG2340 Uncharacterized conser 99.8 5.5E-18 1.2E-22 165.9 13.4 228 162-390 215-519 (698)
74 PRK13766 Hef nuclease; Provisi 99.8 3E-17 6.5E-22 178.5 19.8 174 161-372 13-186 (773)
75 PRK09200 preprotein translocas 99.7 5.5E-18 1.2E-22 179.3 12.3 131 159-321 75-212 (790)
76 PRK05580 primosome assembly pr 99.7 5.7E-17 1.2E-21 172.4 19.2 158 163-364 144-311 (679)
77 PRK12898 secA preprotein trans 99.7 1.2E-17 2.7E-22 173.1 12.8 130 159-321 100-255 (656)
78 KOG0354 DEAD-box like helicase 99.7 7E-17 1.5E-21 166.7 16.0 190 148-374 47-241 (746)
79 COG4581 Superfamily II RNA hel 99.7 6E-17 1.3E-21 173.2 15.2 166 153-362 110-275 (1041)
80 TIGR03714 secA2 accessory Sec 99.7 3E-17 6.6E-22 172.2 12.4 133 159-322 67-209 (762)
81 PRK13104 secA preprotein trans 99.7 2.8E-17 6.2E-22 173.8 12.2 130 159-321 79-215 (896)
82 cd00046 DEXDc DEAD-like helica 99.7 2.1E-15 4.5E-20 127.4 14.7 144 179-357 1-144 (144)
83 PRK11131 ATP-dependent RNA hel 99.7 1.3E-15 2.9E-20 167.4 16.7 159 167-373 78-242 (1294)
84 KOG0951 RNA helicase BRR2, DEA 99.7 1.1E-15 2.4E-20 162.0 15.0 190 146-360 294-487 (1674)
85 COG0514 RecQ Superfamily II DN 99.6 2.2E-15 4.8E-20 153.8 15.7 176 154-370 7-189 (590)
86 PRK12904 preprotein translocas 99.6 1.9E-15 4.2E-20 159.7 12.0 129 159-321 78-214 (830)
87 KOG0947 Cytoplasmic exosomal R 99.6 1.2E-15 2.6E-20 158.3 9.4 161 158-369 293-455 (1248)
88 KOG0948 Nuclear exosomal RNA h 99.6 3.8E-15 8.3E-20 151.2 10.9 207 163-416 129-343 (1041)
89 KOG0352 ATP-dependent DNA heli 99.5 1.4E-13 3E-18 132.3 14.2 183 151-375 6-206 (641)
90 PRK09694 helicase Cas3; Provis 99.5 8.4E-14 1.8E-18 150.1 13.9 170 162-365 285-488 (878)
91 PRK13107 preprotein translocas 99.5 4.2E-14 9.1E-19 149.6 10.8 131 159-322 79-216 (908)
92 TIGR01967 DEAH_box_HrpA ATP-de 99.5 2E-13 4.2E-18 150.9 16.3 170 159-373 60-235 (1283)
93 TIGR00595 priA primosomal prot 99.5 2.2E-13 4.7E-18 140.3 14.2 136 182-364 1-146 (505)
94 PF04851 ResIII: Type III rest 99.5 1.1E-13 2.3E-18 123.4 9.4 152 163-358 3-183 (184)
95 KOG0353 ATP-dependent DNA heli 99.4 2.5E-12 5.5E-17 121.9 15.1 186 143-369 73-272 (695)
96 PF06862 DUF1253: Protein of u 99.4 1.5E-12 3.3E-17 129.5 14.2 180 227-407 30-284 (442)
97 TIGR01407 dinG_rel DnaQ family 99.4 1.6E-12 3.4E-17 142.4 15.6 146 148-322 231-454 (850)
98 KOG0351 ATP-dependent DNA heli 99.4 1.2E-12 2.6E-17 141.1 13.3 178 152-370 253-443 (941)
99 COG1200 RecG RecG-like helicas 99.4 7.8E-12 1.7E-16 128.0 18.2 167 147-360 246-424 (677)
100 COG1061 SSL2 DNA or RNA helica 99.4 2.1E-12 4.6E-17 131.2 12.6 146 162-359 35-185 (442)
101 KOG0950 DNA polymerase theta/e 99.4 1.9E-12 4E-17 135.6 12.1 184 142-359 202-389 (1008)
102 TIGR00603 rad25 DNA repair hel 99.4 3.1E-12 6.7E-17 134.7 13.4 148 163-359 255-413 (732)
103 PRK07246 bifunctional ATP-depe 99.4 2.8E-12 6E-17 139.0 13.2 135 157-322 240-450 (820)
104 TIGR03117 cas_csf4 CRISPR-asso 99.3 6.1E-12 1.3E-16 131.1 12.8 125 172-322 10-220 (636)
105 PRK11448 hsdR type I restricti 99.3 1.6E-11 3.4E-16 136.2 16.1 166 163-366 413-603 (1123)
106 KOG0949 Predicted helicase, DE 99.2 5.3E-11 1.1E-15 124.5 12.8 168 163-370 511-682 (1330)
107 COG1643 HrpA HrpA-like helicas 99.2 6E-11 1.3E-15 126.6 13.5 207 165-420 52-261 (845)
108 COG1110 Reverse gyrase [DNA re 99.2 3.6E-10 7.7E-15 119.4 18.6 134 160-324 80-219 (1187)
109 COG1197 Mfd Transcription-repa 99.2 2.4E-10 5.2E-15 123.3 16.1 190 149-385 580-780 (1139)
110 TIGR00348 hsdR type I site-spe 99.1 4.4E-10 9.5E-15 119.9 14.1 168 147-358 212-403 (667)
111 COG1203 CRISPR-associated heli 99.1 5.8E-10 1.3E-14 120.1 13.4 182 163-375 195-398 (733)
112 smart00488 DEXDc2 DEAD-like he 99.0 2.2E-09 4.9E-14 103.1 12.8 44 160-204 6-53 (289)
113 smart00489 DEXDc3 DEAD-like he 99.0 2.2E-09 4.9E-14 103.1 12.8 44 160-204 6-53 (289)
114 PRK13103 secA preprotein trans 99.0 8.1E-10 1.8E-14 117.5 10.0 130 159-321 79-215 (913)
115 PRK08074 bifunctional ATP-depe 99.0 2.1E-09 4.6E-14 118.7 13.4 65 160-252 255-323 (928)
116 COG4098 comFA Superfamily II D 99.0 1.1E-08 2.3E-13 96.7 13.7 151 163-365 97-251 (441)
117 PF07652 Flavi_DEAD: Flaviviru 99.0 6.2E-09 1.3E-13 87.8 10.5 138 177-361 3-140 (148)
118 PRK12326 preprotein translocas 98.9 7E-09 1.5E-13 108.1 11.7 130 159-321 75-211 (764)
119 PRK12906 secA preprotein trans 98.9 7.6E-09 1.6E-13 109.8 11.8 130 159-321 77-213 (796)
120 COG1198 PriA Primosomal protei 98.9 4.9E-08 1.1E-12 103.2 16.3 156 163-365 198-367 (730)
121 PF00176 SNF2_N: SNF2 family N 98.9 1.5E-08 3.3E-13 97.5 11.6 152 177-363 24-179 (299)
122 KOG0920 ATP-dependent RNA heli 98.9 4.2E-08 9.1E-13 105.0 15.4 166 163-371 173-340 (924)
123 CHL00122 secA preprotein trans 98.8 1.9E-08 4.1E-13 106.8 10.3 130 159-321 73-209 (870)
124 PF07517 SecA_DEAD: SecA DEAD- 98.8 6.9E-08 1.5E-12 90.9 12.6 131 158-321 73-210 (266)
125 KOG0951 RNA helicase BRR2, DEA 98.8 1.1E-08 2.5E-13 109.8 8.0 151 163-359 1143-1301(1674)
126 PRK12902 secA preprotein trans 98.8 3.9E-08 8.5E-13 104.4 10.8 130 159-321 82-218 (939)
127 PRK11747 dinG ATP-dependent DN 98.8 7.4E-08 1.6E-12 103.3 12.9 64 160-251 23-95 (697)
128 COG4096 HsdR Type I site-speci 98.7 2.8E-08 6.1E-13 103.7 8.7 161 163-372 165-336 (875)
129 PLN03142 Probable chromatin-re 98.7 2.1E-07 4.5E-12 102.3 15.7 162 163-365 169-338 (1033)
130 KOG0922 DEAH-box RNA helicase 98.7 1.6E-07 3.5E-12 96.0 13.6 163 165-371 53-216 (674)
131 TIGR02562 cas3_yersinia CRISPR 98.6 2.1E-07 4.5E-12 100.4 11.3 77 285-369 563-647 (1110)
132 KOG0924 mRNA splicing factor A 98.6 5.7E-07 1.2E-11 91.8 12.6 160 160-359 353-512 (1042)
133 KOG0925 mRNA splicing factor A 98.5 2.1E-06 4.6E-11 84.8 13.8 195 140-378 24-219 (699)
134 COG1199 DinG Rad3-related DNA 98.5 9.1E-07 2E-11 94.9 12.3 72 157-255 9-84 (654)
135 PRK04914 ATP-dependent helicas 98.5 1.9E-06 4E-11 94.5 13.7 165 163-364 152-323 (956)
136 KOG0923 mRNA splicing factor A 98.5 7.2E-06 1.6E-10 83.8 16.6 165 162-371 264-431 (902)
137 KOG0926 DEAH-box RNA helicase 98.4 1.6E-05 3.4E-10 82.9 18.9 154 171-358 264-425 (1172)
138 KOG0385 Chromatin remodeling c 98.3 7.4E-06 1.6E-10 85.0 13.5 168 163-372 167-342 (971)
139 PRK12903 secA preprotein trans 98.3 2.8E-06 6.2E-11 90.3 10.7 130 159-321 75-211 (925)
140 TIGR00604 rad3 DNA repair heli 98.3 4.1E-06 8.8E-11 90.5 11.9 46 159-204 6-55 (705)
141 PRK14873 primosome assembly pr 98.3 4.9E-06 1.1E-10 88.3 11.8 137 185-364 167-310 (665)
142 PF13604 AAA_30: AAA domain; P 98.2 1.3E-05 2.9E-10 72.6 11.2 123 164-356 2-130 (196)
143 PRK15483 type III restriction- 98.2 1.8E-05 4E-10 85.8 13.8 143 179-359 60-240 (986)
144 PF13086 AAA_11: AAA domain; P 98.2 5.5E-06 1.2E-10 76.3 8.3 73 164-256 2-75 (236)
145 KOG1123 RNA polymerase II tran 98.2 2.7E-06 5.8E-11 84.3 6.1 149 163-360 302-461 (776)
146 KOG0387 Transcription-coupled 98.1 3.9E-05 8.5E-10 80.1 13.3 171 142-364 191-383 (923)
147 KOG0390 DNA repair protein, SN 98.0 0.00011 2.3E-09 78.1 15.2 171 163-368 238-426 (776)
148 PF14617 CMS1: U3-containing 9 98.0 1.9E-05 4E-10 73.7 7.6 87 231-318 123-211 (252)
149 KOG0952 DNA/RNA helicase MER3/ 98.0 3.1E-06 6.7E-11 90.4 1.9 164 163-357 927-1093(1230)
150 COG4889 Predicted helicase [Ge 97.9 3.3E-05 7.2E-10 81.3 8.7 148 141-321 140-317 (1518)
151 PF02399 Herpes_ori_bp: Origin 97.9 9.9E-05 2.1E-09 78.3 11.4 149 179-371 50-204 (824)
152 COG0610 Type I site-specific r 97.9 0.00016 3.6E-09 80.1 13.5 190 143-374 217-435 (962)
153 PRK12900 secA preprotein trans 97.8 3.6E-05 7.8E-10 83.2 7.8 127 163-321 138-271 (1025)
154 PF13872 AAA_34: P-loop contai 97.8 0.00032 6.8E-09 66.7 12.6 177 142-365 22-228 (303)
155 PF09848 DUF2075: Uncharacteri 97.7 0.00013 2.8E-09 72.3 9.4 108 180-335 3-117 (352)
156 PRK12901 secA preprotein trans 97.7 8.1E-05 1.8E-09 80.7 7.5 127 163-321 169-303 (1112)
157 KOG1002 Nucleotide excision re 97.7 0.00025 5.5E-09 70.5 9.8 158 163-364 184-362 (791)
158 PF02562 PhoH: PhoH-like prote 97.6 0.00043 9.3E-09 62.8 10.1 147 161-356 2-155 (205)
159 KOG4439 RNA polymerase II tran 97.6 0.00024 5.2E-09 73.4 9.4 179 163-372 325-519 (901)
160 KOG1803 DNA helicase [Replicat 97.6 0.00034 7.4E-09 71.4 10.2 63 163-253 185-248 (649)
161 TIGR01447 recD exodeoxyribonuc 97.6 0.00082 1.8E-08 70.8 13.3 141 165-356 147-295 (586)
162 KOG0389 SNF2 family DNA-depend 97.6 0.00037 8E-09 73.0 9.9 163 164-367 400-573 (941)
163 PRK10875 recD exonuclease V su 97.6 0.00091 2E-08 70.7 12.8 139 165-355 154-300 (615)
164 KOG1132 Helicase of the DEAD s 97.6 0.00041 8.8E-09 73.6 10.0 44 163-206 21-68 (945)
165 TIGR01448 recD_rel helicase, p 97.5 0.0012 2.6E-08 71.4 12.8 67 158-251 319-385 (720)
166 COG3587 Restriction endonuclea 97.5 0.00024 5.2E-09 75.0 6.9 145 179-363 75-248 (985)
167 PRK10536 hypothetical protein; 97.4 0.0022 4.7E-08 60.1 12.4 43 159-201 55-97 (262)
168 PRK13889 conjugal transfer rel 97.4 0.0026 5.6E-08 70.5 14.4 127 159-356 343-470 (988)
169 KOG0391 SNF2 family DNA-depend 97.4 0.0083 1.8E-07 65.6 17.2 164 145-358 605-776 (1958)
170 TIGR00376 DNA helicase, putati 97.4 0.0017 3.7E-08 69.2 12.1 66 163-256 157-223 (637)
171 KOG1802 RNA helicase nonsense 97.4 0.00088 1.9E-08 69.0 9.2 76 155-257 402-477 (935)
172 KOG4150 Predicted ATP-dependen 97.2 0.00083 1.8E-08 68.0 7.3 183 155-364 278-468 (1034)
173 PF13245 AAA_19: Part of AAA d 97.2 0.0019 4E-08 49.0 7.1 53 178-254 9-62 (76)
174 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0059 1.3E-07 66.3 13.7 136 148-354 338-474 (744)
175 KOG0392 SNF2 family DNA-depend 97.2 0.0035 7.6E-08 68.7 11.6 172 165-372 977-1157(1549)
176 PF05970 PIF1: PIF1-like helic 97.1 0.0026 5.7E-08 63.3 9.7 122 164-338 2-131 (364)
177 PF13401 AAA_22: AAA domain; P 97.0 0.0023 4.9E-08 53.4 7.3 21 177-197 3-23 (131)
178 PRK12723 flagellar biosynthesi 97.0 0.0076 1.7E-07 60.2 11.7 69 291-369 241-310 (388)
179 COG0556 UvrB Helicase subunit 97.0 0.0014 3E-08 66.1 6.2 67 163-260 12-83 (663)
180 PF12340 DUF3638: Protein of u 96.9 0.012 2.7E-07 54.0 11.6 151 142-322 4-186 (229)
181 KOG0384 Chromodomain-helicase 96.9 0.0052 1.1E-07 67.5 10.3 157 162-366 369-545 (1373)
182 KOG1000 Chromatin remodeling p 96.9 0.0069 1.5E-07 60.7 10.2 149 163-357 198-348 (689)
183 PRK13826 Dtr system oriT relax 96.8 0.021 4.5E-07 63.9 14.3 139 147-356 366-505 (1102)
184 PRK08181 transposase; Validate 96.7 0.023 4.9E-07 54.1 12.2 20 175-194 103-122 (269)
185 cd00009 AAA The AAA+ (ATPases 96.7 0.019 4E-07 48.0 10.7 17 178-194 19-35 (151)
186 PF00580 UvrD-helicase: UvrD/R 96.7 0.0044 9.6E-08 59.7 7.5 71 164-260 1-71 (315)
187 PRK14974 cell division protein 96.7 0.017 3.8E-07 56.6 11.1 56 307-370 221-277 (336)
188 KOG0921 Dosage compensation co 96.7 0.013 2.7E-07 62.7 10.5 153 170-360 385-538 (1282)
189 COG0653 SecA Preprotein transl 96.7 0.0066 1.4E-07 65.1 8.6 130 159-321 77-213 (822)
190 PRK06526 transposase; Provisio 96.6 0.007 1.5E-07 57.1 7.5 23 174-196 94-116 (254)
191 PF05127 Helicase_RecD: Helica 96.5 0.0058 1.3E-07 54.1 6.0 158 182-392 1-161 (177)
192 PRK04296 thymidine kinase; Pro 96.4 0.011 2.5E-07 53.1 7.5 41 290-337 63-103 (190)
193 PRK06835 DNA replication prote 96.4 0.025 5.5E-07 55.4 10.4 18 177-194 182-199 (329)
194 COG1419 FlhF Flagellar GTP-bin 96.4 0.032 6.9E-07 55.3 11.0 91 177-294 202-292 (407)
195 PHA02533 17 large terminase pr 96.4 0.048 1E-06 57.0 12.9 150 163-357 59-210 (534)
196 TIGR00631 uvrb excinuclease AB 96.3 0.018 3.8E-07 61.7 9.5 66 163-259 9-79 (655)
197 COG1444 Predicted P-loop ATPas 96.2 0.062 1.3E-06 57.5 12.7 164 155-372 206-374 (758)
198 COG2805 PilT Tfp pilus assembl 96.2 0.007 1.5E-07 57.3 4.9 50 137-205 102-151 (353)
199 KOG0989 Replication factor C, 96.2 0.02 4.4E-07 54.4 7.9 53 303-364 124-176 (346)
200 PRK11889 flhF flagellar biosyn 96.2 0.059 1.3E-06 53.7 11.3 74 289-370 302-376 (436)
201 PRK06893 DNA replication initi 96.1 0.018 3.8E-07 53.5 7.3 47 307-360 90-137 (229)
202 PF03354 Terminase_1: Phage Te 96.1 0.028 6.1E-07 58.1 9.5 150 166-355 1-161 (477)
203 smart00382 AAA ATPases associa 96.1 0.017 3.8E-07 47.6 6.4 22 178-199 2-23 (148)
204 KOG1015 Transcription regulato 96.0 0.1 2.2E-06 56.4 12.9 183 147-364 660-867 (1567)
205 PRK14722 flhF flagellar biosyn 96.0 0.022 4.7E-07 56.6 7.7 60 141-200 81-159 (374)
206 PRK06995 flhF flagellar biosyn 95.9 0.13 2.8E-06 52.9 13.0 22 178-199 256-277 (484)
207 KOG1805 DNA replication helica 95.9 0.028 6E-07 60.7 8.3 127 162-322 668-810 (1100)
208 COG3421 Uncharacterized protei 95.9 0.01 2.2E-07 60.8 4.8 72 282-359 79-167 (812)
209 TIGR01547 phage_term_2 phage t 95.8 0.074 1.6E-06 53.5 10.8 148 180-370 3-153 (396)
210 PRK14087 dnaA chromosomal repl 95.8 0.044 9.6E-07 56.1 9.2 49 307-362 205-254 (450)
211 cd01120 RecA-like_NTPases RecA 95.8 0.06 1.3E-06 46.1 8.9 19 181-199 2-20 (165)
212 PRK07952 DNA replication prote 95.8 0.11 2.3E-06 48.8 10.9 52 306-364 160-212 (244)
213 PRK05642 DNA replication initi 95.8 0.028 6E-07 52.4 7.0 44 307-358 96-140 (234)
214 PRK05298 excinuclease ABC subu 95.7 0.025 5.5E-07 60.7 7.4 66 163-259 12-82 (652)
215 PRK05703 flhF flagellar biosyn 95.7 0.098 2.1E-06 53.1 11.2 20 178-197 221-240 (424)
216 PRK08727 hypothetical protein; 95.7 0.051 1.1E-06 50.6 8.5 16 179-194 42-57 (233)
217 PRK13894 conjugal transfer ATP 95.7 0.064 1.4E-06 52.3 9.5 48 151-201 122-170 (319)
218 PRK08116 hypothetical protein; 95.7 0.18 3.9E-06 48.0 12.4 17 179-195 115-131 (268)
219 KOG0953 Mitochondrial RNA heli 95.7 0.02 4.3E-07 58.3 5.8 100 180-325 193-292 (700)
220 PRK11331 5-methylcytosine-spec 95.6 0.03 6.5E-07 56.7 6.9 33 164-196 180-212 (459)
221 cd01124 KaiC KaiC is a circadi 95.6 0.11 2.4E-06 46.0 10.0 31 307-337 94-127 (187)
222 PF00448 SRP54: SRP54-type pro 95.5 0.088 1.9E-06 47.6 9.2 55 308-370 83-138 (196)
223 PRK06921 hypothetical protein; 95.5 0.24 5.2E-06 47.1 12.2 18 177-194 116-133 (266)
224 PF00308 Bac_DnaA: Bacterial d 95.4 0.072 1.6E-06 49.1 8.4 50 306-362 95-145 (219)
225 TIGR00596 rad1 DNA repair prot 95.4 0.03 6.5E-07 61.1 6.6 81 285-373 8-90 (814)
226 TIGR02881 spore_V_K stage V sp 95.4 0.087 1.9E-06 49.8 9.1 18 178-195 42-59 (261)
227 PF05621 TniB: Bacterial TniB 95.4 0.14 3.1E-06 49.0 10.2 32 306-337 143-176 (302)
228 KOG0386 Chromatin remodeling c 95.3 0.039 8.4E-07 59.8 6.9 166 163-371 394-572 (1157)
229 PRK12422 chromosomal replicati 95.3 0.089 1.9E-06 53.8 9.4 52 307-365 201-253 (445)
230 TIGR03420 DnaA_homol_Hda DnaA 95.3 0.095 2.1E-06 48.1 8.8 19 177-195 37-55 (226)
231 PRK14712 conjugal transfer nic 95.2 0.18 4E-06 58.5 12.1 63 163-251 835-901 (1623)
232 PRK13833 conjugal transfer pro 95.2 0.13 2.9E-06 50.1 9.6 45 154-201 121-166 (323)
233 PRK08084 DNA replication initi 95.2 0.086 1.9E-06 49.1 8.1 17 178-194 45-61 (235)
234 TIGR01425 SRP54_euk signal rec 95.1 0.14 3.1E-06 51.7 10.0 17 180-196 102-118 (429)
235 PF00004 AAA: ATPase family as 95.1 0.052 1.1E-06 44.9 5.7 17 181-197 1-17 (132)
236 TIGR00362 DnaA chromosomal rep 95.0 0.089 1.9E-06 53.2 8.3 49 308-363 199-248 (405)
237 TIGR02760 TraI_TIGR conjugativ 95.0 0.24 5.2E-06 59.5 12.9 136 163-356 429-566 (1960)
238 TIGR01075 uvrD DNA helicase II 95.0 0.062 1.4E-06 58.5 7.6 71 162-258 3-73 (715)
239 PRK13709 conjugal transfer nic 95.0 0.26 5.7E-06 58.0 12.8 65 163-251 967-1033(1747)
240 PHA03333 putative ATPase subun 94.9 0.51 1.1E-05 50.1 13.5 146 164-359 170-334 (752)
241 PRK14088 dnaA chromosomal repl 94.9 0.26 5.7E-06 50.4 11.4 52 308-366 194-246 (440)
242 PRK00149 dnaA chromosomal repl 94.9 0.24 5.2E-06 50.8 11.1 48 308-362 211-259 (450)
243 PRK08769 DNA polymerase III su 94.8 0.25 5.5E-06 48.1 10.4 34 161-194 2-42 (319)
244 TIGR02760 TraI_TIGR conjugativ 94.7 0.22 4.8E-06 59.7 11.7 61 163-250 1019-1084(1960)
245 PHA03368 DNA packaging termina 94.7 0.57 1.2E-05 49.5 13.2 137 179-362 255-395 (738)
246 PRK12377 putative replication 94.6 0.43 9.4E-06 44.8 11.1 17 178-194 101-117 (248)
247 PHA02544 44 clamp loader, smal 94.6 0.15 3.3E-06 49.4 8.5 39 141-194 18-59 (316)
248 TIGR02785 addA_Gpos recombinat 94.5 0.16 3.5E-06 58.6 9.7 123 164-319 2-126 (1232)
249 cd01122 GP4d_helicase GP4d_hel 94.5 0.17 3.8E-06 47.9 8.4 50 151-200 3-52 (271)
250 TIGR00064 ftsY signal recognit 94.4 0.51 1.1E-05 44.9 11.5 23 178-200 72-94 (272)
251 PRK11773 uvrD DNA-dependent he 94.4 0.086 1.9E-06 57.4 6.8 70 163-258 9-78 (721)
252 PRK04195 replication factor C 94.4 0.5 1.1E-05 48.9 12.2 43 141-195 11-56 (482)
253 COG3973 Superfamily I DNA and 94.3 0.21 4.4E-06 51.8 8.8 94 145-260 186-286 (747)
254 PRK14086 dnaA chromosomal repl 94.3 0.33 7.2E-06 51.2 10.6 50 307-363 376-426 (617)
255 PRK11054 helD DNA helicase IV; 94.3 0.16 3.5E-06 54.7 8.6 70 162-257 195-264 (684)
256 COG1474 CDC6 Cdc6-related prot 94.3 0.35 7.5E-06 48.2 10.3 45 307-359 122-166 (366)
257 PRK13342 recombination factor 94.2 0.32 7E-06 49.3 10.2 18 179-196 37-54 (413)
258 PRK05707 DNA polymerase III su 94.2 0.67 1.4E-05 45.4 12.0 31 164-194 4-38 (328)
259 COG0553 HepA Superfamily II DN 94.2 0.3 6.5E-06 54.1 10.8 136 162-323 337-487 (866)
260 CHL00181 cbbX CbbX; Provisiona 94.2 0.35 7.6E-06 46.5 9.8 21 177-197 58-78 (287)
261 PRK00411 cdc6 cell division co 94.2 0.37 8E-06 48.3 10.4 18 178-195 55-72 (394)
262 PF13173 AAA_14: AAA domain 94.1 0.33 7.1E-06 40.4 8.4 40 308-358 61-100 (128)
263 PRK14723 flhF flagellar biosyn 94.1 0.23 5E-06 53.7 9.1 23 178-200 185-207 (767)
264 PTZ00112 origin recognition co 94.0 0.27 5.8E-06 53.6 9.3 28 307-335 868-895 (1164)
265 PRK14956 DNA polymerase III su 94.0 0.35 7.5E-06 49.6 9.8 20 180-199 42-61 (484)
266 PRK07764 DNA polymerase III su 94.0 0.16 3.4E-06 55.8 7.8 20 180-199 39-58 (824)
267 COG1435 Tdk Thymidine kinase [ 94.0 0.47 1E-05 42.4 9.3 50 285-336 60-109 (201)
268 PRK10919 ATP-dependent DNA hel 94.0 0.13 2.8E-06 55.5 7.1 69 163-257 2-70 (672)
269 PRK00771 signal recognition pa 93.9 0.49 1.1E-05 48.1 10.7 22 178-199 95-116 (437)
270 PRK08699 DNA polymerase III su 93.9 0.55 1.2E-05 46.0 10.7 32 164-195 2-38 (325)
271 PRK14964 DNA polymerase III su 93.9 0.46 1E-05 49.0 10.4 19 179-197 36-54 (491)
272 PRK10416 signal recognition pa 93.9 0.78 1.7E-05 44.8 11.6 62 307-370 195-257 (318)
273 TIGR03499 FlhF flagellar biosy 93.8 0.17 3.7E-06 48.5 6.9 21 178-198 194-214 (282)
274 PRK08903 DnaA regulatory inact 93.8 0.26 5.6E-06 45.4 7.9 44 308-359 90-133 (227)
275 PRK06645 DNA polymerase III su 93.8 0.59 1.3E-05 48.5 11.2 20 179-198 44-63 (507)
276 COG1875 NYN ribonuclease and A 93.8 0.37 8.1E-06 47.1 8.9 43 159-201 224-268 (436)
277 PRK09183 transposase/IS protei 93.6 0.39 8.5E-06 45.4 8.9 21 175-195 99-119 (259)
278 TIGR02880 cbbX_cfxQ probable R 93.6 0.55 1.2E-05 45.0 10.0 19 177-195 57-75 (284)
279 KOG0991 Replication factor C, 93.6 0.22 4.8E-06 45.8 6.6 30 307-337 112-141 (333)
280 PRK12323 DNA polymerase III su 93.5 0.35 7.5E-06 51.3 8.9 18 180-197 40-57 (700)
281 PRK07003 DNA polymerase III su 93.5 0.17 3.8E-06 54.3 6.7 18 180-197 40-57 (830)
282 COG4626 Phage terminase-like p 93.4 1 2.2E-05 46.5 11.9 160 163-370 61-237 (546)
283 KOG0298 DEAD box-containing he 93.4 0.23 5.1E-06 55.3 7.7 165 177-364 373-557 (1394)
284 PRK06731 flhF flagellar biosyn 93.3 1 2.2E-05 42.8 11.1 73 290-370 137-210 (270)
285 PRK12402 replication factor C 93.3 0.36 7.8E-06 47.1 8.4 17 180-196 38-54 (337)
286 TIGR02782 TrbB_P P-type conjug 93.3 0.34 7.3E-06 46.9 7.9 48 151-201 106-154 (299)
287 PRK12726 flagellar biosynthesi 93.2 0.44 9.6E-06 47.4 8.6 23 177-199 205-227 (407)
288 PRK14721 flhF flagellar biosyn 93.2 0.21 4.6E-06 50.5 6.5 23 177-199 190-212 (420)
289 TIGR03015 pepcterm_ATPase puta 93.1 0.41 8.8E-06 45.2 8.1 34 163-196 23-61 (269)
290 COG4962 CpaF Flp pilus assembl 93.0 0.16 3.5E-06 49.3 5.2 35 160-194 154-189 (355)
291 PHA00729 NTP-binding motif con 93.0 0.57 1.2E-05 43.2 8.6 74 286-367 60-138 (226)
292 PRK12727 flagellar biosynthesi 93.0 0.66 1.4E-05 48.1 9.8 23 176-198 348-370 (559)
293 PRK14949 DNA polymerase III su 93.0 0.43 9.3E-06 52.3 8.8 18 181-198 41-58 (944)
294 PRK08533 flagellar accessory p 93.0 1 2.2E-05 41.7 10.4 21 175-195 21-41 (230)
295 TIGR01074 rep ATP-dependent DN 92.9 0.26 5.6E-06 53.2 7.3 69 164-258 2-70 (664)
296 PRK13341 recombination factor 92.9 0.73 1.6E-05 50.0 10.6 42 308-362 109-150 (725)
297 PRK05563 DNA polymerase III su 92.9 0.31 6.8E-06 51.3 7.6 20 179-198 39-58 (559)
298 PRK08691 DNA polymerase III su 92.8 0.46 1E-05 50.8 8.7 20 179-198 39-58 (709)
299 PRK14960 DNA polymerase III su 92.8 0.3 6.4E-06 51.9 7.1 20 179-198 38-57 (702)
300 KOG0388 SNF2 family DNA-depend 92.6 0.73 1.6E-05 48.7 9.4 152 165-358 569-734 (1185)
301 PF03969 AFG1_ATPase: AFG1-lik 92.5 1.4 3.1E-05 43.7 11.3 47 307-361 126-172 (362)
302 PRK14950 DNA polymerase III su 92.4 0.46 1E-05 50.4 8.1 29 306-338 118-146 (585)
303 PRK11823 DNA repair protein Ra 92.3 0.73 1.6E-05 47.2 9.3 52 177-257 79-130 (446)
304 KOG1133 Helicase of the DEAD s 92.3 0.19 4.1E-06 52.7 4.8 42 163-204 15-60 (821)
305 PRK14962 DNA polymerase III su 92.3 0.4 8.6E-06 49.4 7.3 29 306-338 115-143 (472)
306 PRK14951 DNA polymerase III su 92.3 0.64 1.4E-05 49.4 8.9 18 180-197 40-57 (618)
307 TIGR00580 mfd transcription-re 92.0 0.56 1.2E-05 52.3 8.5 80 233-320 659-742 (926)
308 PRK06904 replicative DNA helic 92.0 2.5 5.5E-05 43.6 12.8 50 308-361 334-387 (472)
309 PRK14959 DNA polymerase III su 91.9 0.4 8.7E-06 50.7 6.9 47 307-363 118-164 (624)
310 PRK05973 replicative DNA helic 91.9 0.83 1.8E-05 42.5 8.3 38 163-201 50-87 (237)
311 PRK07994 DNA polymerase III su 91.9 2.3 5E-05 45.5 12.5 18 181-198 41-58 (647)
312 PRK06067 flagellar accessory p 91.9 1.6 3.4E-05 40.4 10.3 47 308-359 120-166 (234)
313 PRK09111 DNA polymerase III su 91.9 3.4 7.4E-05 43.9 13.8 44 141-199 21-67 (598)
314 cd03239 ABC_SMC_head The struc 91.8 0.21 4.5E-06 44.4 4.1 42 307-355 115-156 (178)
315 KOG1001 Helicase-like transcri 91.8 1 2.2E-05 48.3 9.8 112 180-322 154-268 (674)
316 cd01130 VirB11-like_ATPase Typ 91.8 0.23 5E-06 44.3 4.4 38 156-195 4-42 (186)
317 PRK14955 DNA polymerase III su 91.7 0.69 1.5E-05 46.6 8.2 29 306-338 125-153 (397)
318 PRK14958 DNA polymerase III su 91.7 0.61 1.3E-05 48.6 8.0 18 180-197 40-57 (509)
319 PRK10436 hypothetical protein; 91.7 0.8 1.7E-05 47.0 8.7 35 166-201 204-240 (462)
320 TIGR03877 thermo_KaiC_1 KaiC d 91.7 0.8 1.7E-05 42.6 8.0 53 177-258 20-72 (237)
321 PRK12724 flagellar biosynthesi 91.6 1.8 4E-05 43.6 10.8 23 178-200 223-245 (432)
322 PRK06964 DNA polymerase III su 91.6 2.2 4.8E-05 42.0 11.3 32 164-195 2-38 (342)
323 TIGR00631 uvrb excinuclease AB 91.5 2.4 5.3E-05 45.6 12.4 119 233-367 441-563 (655)
324 KOG0742 AAA+-type ATPase [Post 91.5 0.37 8.1E-06 47.8 5.7 46 143-194 354-400 (630)
325 PF05496 RuvB_N: Holliday junc 91.5 0.83 1.8E-05 42.0 7.6 18 180-197 52-69 (233)
326 PF13177 DNA_pol3_delta2: DNA 91.4 3.9 8.6E-05 35.5 11.7 47 307-363 101-147 (162)
327 PRK05986 cob(I)alamin adenolsy 91.3 1.4 3E-05 39.6 8.7 52 307-366 114-167 (191)
328 TIGR00959 ffh signal recogniti 91.3 2.7 5.8E-05 42.7 11.9 20 180-199 101-120 (428)
329 PTZ00454 26S protease regulato 91.3 0.82 1.8E-05 46.1 8.1 54 139-195 140-196 (398)
330 PF05876 Terminase_GpA: Phage 91.2 0.54 1.2E-05 49.5 7.0 62 163-251 16-79 (557)
331 KOG3089 Predicted DEAD-box-con 91.0 0.077 1.7E-06 47.8 0.5 33 283-315 195-227 (271)
332 KOG2228 Origin recognition com 91.0 2.8 6E-05 40.8 10.9 45 293-337 122-166 (408)
333 PRK14952 DNA polymerase III su 91.0 1.4 3E-05 46.6 9.8 19 181-199 38-56 (584)
334 PLN03025 replication factor C 91.0 1 2.2E-05 43.9 8.3 17 179-195 35-51 (319)
335 PRK08939 primosomal protein Dn 91.0 1.1 2.4E-05 43.5 8.5 19 177-195 155-173 (306)
336 cd00984 DnaB_C DnaB helicase C 90.9 2.1 4.6E-05 39.5 10.2 21 176-196 11-31 (242)
337 PF06745 KaiC: KaiC; InterPro 90.9 0.52 1.1E-05 43.3 5.9 25 177-201 18-42 (226)
338 PRK10689 transcription-repair 90.8 0.82 1.8E-05 52.2 8.4 79 234-320 809-891 (1147)
339 TIGR03600 phage_DnaB phage rep 90.8 1.8 3.9E-05 44.0 10.2 45 308-355 305-352 (421)
340 PRK06871 DNA polymerase III su 90.8 3.7 8.1E-05 40.1 11.9 31 164-194 3-40 (325)
341 COG2804 PulE Type II secretory 90.8 0.4 8.7E-06 48.9 5.3 36 165-201 243-280 (500)
342 PRK14961 DNA polymerase III su 90.7 0.94 2E-05 45.1 7.9 18 180-197 40-57 (363)
343 KOG0344 ATP-dependent RNA heli 90.6 3.3 7.1E-05 42.9 11.6 77 233-318 386-466 (593)
344 KOG1131 RNA polymerase II tran 90.5 1.6 3.5E-05 44.7 9.1 43 160-202 13-59 (755)
345 PF03796 DnaB_C: DnaB-like hel 90.4 2.5 5.5E-05 39.7 10.3 145 177-357 18-180 (259)
346 PRK14963 DNA polymerase III su 90.4 1.4 3E-05 45.8 9.1 29 306-338 114-142 (504)
347 PRK07940 DNA polymerase III su 90.3 2.8 6E-05 42.2 10.8 51 306-366 115-165 (394)
348 PF03237 Terminase_6: Terminas 90.3 0.61 1.3E-05 45.7 6.2 22 182-203 1-22 (384)
349 PRK13851 type IV secretion sys 90.3 0.47 1E-05 46.8 5.2 29 172-201 156-184 (344)
350 PRK04537 ATP-dependent RNA hel 90.2 1.8 3.9E-05 45.9 9.9 75 233-317 256-334 (572)
351 KOG0741 AAA+-type ATPase [Post 90.1 4.4 9.6E-05 41.8 11.8 51 146-196 494-556 (744)
352 COG0552 FtsY Signal recognitio 90.1 6.5 0.00014 38.3 12.6 171 180-404 141-328 (340)
353 COG2256 MGS1 ATPase related to 90.1 1.5 3.3E-05 43.5 8.5 19 179-197 49-67 (436)
354 TIGR02538 type_IV_pilB type IV 90.0 1.2 2.5E-05 47.2 8.3 43 156-202 295-339 (564)
355 COG2909 MalT ATP-dependent tra 90.0 0.58 1.2E-05 50.5 5.8 44 308-359 129-172 (894)
356 COG0470 HolB ATPase involved i 90.0 0.76 1.7E-05 44.5 6.5 55 306-370 107-161 (325)
357 PRK11034 clpA ATP-dependent Cl 89.9 0.63 1.4E-05 50.8 6.3 45 310-362 280-328 (758)
358 cd01121 Sms Sms (bacterial rad 89.9 2.1 4.5E-05 42.8 9.5 23 177-199 81-103 (372)
359 cd01126 TraG_VirD4 The TraG/Tr 89.8 0.3 6.4E-06 49.0 3.5 22 180-201 1-22 (384)
360 TIGR01073 pcrA ATP-dependent D 89.8 0.8 1.7E-05 50.0 7.1 37 163-201 4-40 (726)
361 PRK05896 DNA polymerase III su 89.7 2.7 5.9E-05 44.5 10.5 19 179-197 39-57 (605)
362 PRK00440 rfc replication facto 89.7 2.2 4.8E-05 41.1 9.5 16 180-195 40-55 (319)
363 PRK03992 proteasome-activating 89.7 1.5 3.2E-05 44.2 8.3 17 178-194 165-181 (389)
364 PRK14965 DNA polymerase III su 89.6 2.6 5.6E-05 44.7 10.5 18 180-197 40-57 (576)
365 TIGR03881 KaiC_arch_4 KaiC dom 89.5 3.9 8.3E-05 37.6 10.5 20 177-196 19-38 (229)
366 KOG0744 AAA+-type ATPase [Post 89.4 1.4 3E-05 42.6 7.4 141 176-355 175-353 (423)
367 PRK09112 DNA polymerase III su 89.3 9.2 0.0002 37.9 13.5 21 174-194 38-61 (351)
368 PRK07133 DNA polymerase III su 89.3 1.6 3.5E-05 47.1 8.6 28 306-337 116-143 (725)
369 PRK14954 DNA polymerase III su 89.2 1.6 3.5E-05 46.5 8.5 29 306-338 125-153 (620)
370 PRK06090 DNA polymerase III su 89.2 3 6.6E-05 40.6 9.8 32 163-194 3-41 (319)
371 TIGR00763 lon ATP-dependent pr 89.0 0.87 1.9E-05 50.1 6.7 19 177-195 346-364 (775)
372 PTZ00293 thymidine kinase; Pro 89.0 2.7 5.9E-05 38.3 8.8 20 178-197 4-23 (211)
373 PHA03372 DNA packaging termina 89.0 4.1 8.8E-05 42.9 10.9 132 179-359 203-339 (668)
374 KOG0733 Nuclear AAA ATPase (VC 89.0 1.3 2.7E-05 46.4 7.2 51 308-363 604-661 (802)
375 PRK13900 type IV secretion sys 88.9 1.4 3.1E-05 43.2 7.4 27 174-201 156-182 (332)
376 PF01443 Viral_helicase1: Vira 88.9 0.49 1.1E-05 43.5 4.1 14 181-194 1-14 (234)
377 PRK14948 DNA polymerase III su 88.9 1.9 4.2E-05 46.0 8.9 28 307-338 120-147 (620)
378 PRK13764 ATPase; Provisional 88.8 0.55 1.2E-05 49.6 4.7 27 176-203 255-281 (602)
379 KOG0732 AAA+-type ATPase conta 88.8 1.1 2.3E-05 49.9 7.0 54 139-195 260-316 (1080)
380 cd00561 CobA_CobO_BtuR ATP:cor 88.8 2.7 5.8E-05 36.6 8.2 52 306-365 93-146 (159)
381 TIGR02524 dot_icm_DotB Dot/Icm 88.8 0.51 1.1E-05 46.8 4.3 24 177-201 133-156 (358)
382 PRK06647 DNA polymerase III su 88.7 1.8 3.9E-05 45.6 8.5 29 306-338 117-145 (563)
383 PF01637 Arch_ATPase: Archaeal 88.6 0.21 4.5E-06 45.6 1.3 23 178-201 20-42 (234)
384 PF14516 AAA_35: AAA-like doma 88.5 4.3 9.2E-05 39.8 10.6 29 166-194 18-47 (331)
385 PRK07993 DNA polymerase III su 88.5 7 0.00015 38.4 12.0 31 164-194 3-40 (334)
386 PRK08506 replicative DNA helic 88.4 3.5 7.7E-05 42.6 10.3 51 307-361 301-355 (472)
387 TIGR02868 CydC thiol reductant 88.4 2 4.3E-05 45.0 8.6 31 306-336 486-516 (529)
388 PRK04837 ATP-dependent RNA hel 88.3 1.9 4E-05 43.8 8.2 72 234-315 255-330 (423)
389 PRK05748 replicative DNA helic 88.3 5.5 0.00012 40.8 11.7 46 308-356 314-364 (448)
390 PRK08840 replicative DNA helic 88.3 6.1 0.00013 40.7 11.9 50 308-361 329-382 (464)
391 PRK09087 hypothetical protein; 88.3 1.9 4.1E-05 39.9 7.4 41 311-360 90-130 (226)
392 COG5008 PilU Tfp pilus assembl 88.2 0.49 1.1E-05 44.4 3.4 18 180-197 129-146 (375)
393 COG1132 MdlB ABC-type multidru 88.2 1.1 2.5E-05 47.3 6.8 32 306-337 481-512 (567)
394 PF01695 IstB_IS21: IstB-like 88.2 0.74 1.6E-05 40.9 4.5 21 175-195 44-64 (178)
395 PRK07004 replicative DNA helic 88.2 3.8 8.3E-05 42.2 10.3 49 308-360 324-376 (460)
396 COG1484 DnaC DNA replication p 88.2 0.95 2.1E-05 42.7 5.5 19 177-195 104-122 (254)
397 PF02534 T4SS-DNA_transf: Type 88.1 0.54 1.2E-05 48.4 4.2 23 179-201 45-67 (469)
398 cd03115 SRP The signal recogni 88.1 6.1 0.00013 34.4 10.4 17 181-197 3-19 (173)
399 COG2874 FlaH Predicted ATPases 88.0 18 0.0004 33.1 13.1 76 306-386 121-199 (235)
400 PRK14969 DNA polymerase III su 87.9 1.8 4E-05 45.3 7.9 18 180-197 40-57 (527)
401 PRK10867 signal recognition pa 87.9 5.2 0.00011 40.8 10.8 20 180-199 102-121 (433)
402 PF05729 NACHT: NACHT domain 87.8 2.8 6.1E-05 35.7 8.0 15 181-195 3-17 (166)
403 TIGR01243 CDC48 AAA family ATP 87.8 3 6.5E-05 45.6 9.8 52 140-194 174-228 (733)
404 PRK11192 ATP-dependent RNA hel 87.8 2.5 5.5E-05 42.9 8.8 71 234-314 245-319 (434)
405 CHL00176 ftsH cell division pr 87.7 1.3 2.8E-05 47.5 6.7 17 179-195 217-233 (638)
406 TIGR00665 DnaB replicative DNA 87.7 4.9 0.00011 40.9 10.8 45 308-355 305-353 (434)
407 PRK04841 transcriptional regul 87.6 3.7 7.9E-05 45.9 10.7 43 309-359 122-164 (903)
408 KOG0333 U5 snRNP-like RNA heli 87.6 2.1 4.6E-05 43.8 7.7 71 233-313 516-590 (673)
409 TIGR00678 holB DNA polymerase 87.6 8.7 0.00019 34.0 11.2 29 306-338 94-122 (188)
410 TIGR02525 plasmid_TraJ plasmid 87.5 0.6 1.3E-05 46.5 3.8 25 177-202 148-172 (372)
411 PRK14953 DNA polymerase III su 87.5 2.1 4.6E-05 44.3 8.0 28 306-337 117-144 (486)
412 cd01129 PulE-GspE PulE/GspE Th 87.5 2.2 4.7E-05 40.5 7.5 42 156-201 59-102 (264)
413 TIGR00635 ruvB Holliday juncti 87.3 1.6 3.4E-05 42.1 6.6 16 179-194 31-46 (305)
414 PRK08006 replicative DNA helic 87.2 8.3 0.00018 39.8 12.1 50 308-361 336-389 (471)
415 TIGR03819 heli_sec_ATPase heli 87.1 1.7 3.6E-05 42.9 6.7 44 150-195 151-195 (340)
416 PRK14971 DNA polymerase III su 87.1 4.9 0.00011 42.9 10.6 54 306-369 119-172 (614)
417 KOG0734 AAA+-type ATPase conta 87.0 2.1 4.5E-05 44.1 7.3 70 287-363 376-454 (752)
418 PRK07471 DNA polymerase III su 86.5 8.9 0.00019 38.2 11.5 28 306-337 139-166 (365)
419 TIGR02639 ClpA ATP-dependent C 86.2 1.1 2.5E-05 48.8 5.5 18 178-195 203-220 (731)
420 TIGR00643 recG ATP-dependent D 85.9 2.8 6.1E-05 45.0 8.2 80 233-320 447-538 (630)
421 TIGR00708 cobA cob(I)alamin ad 85.7 4.4 9.5E-05 35.8 7.9 51 307-365 96-148 (173)
422 PRK13897 type IV secretion sys 85.7 0.98 2.1E-05 48.0 4.4 23 179-201 159-181 (606)
423 PF00437 T2SE: Type II/IV secr 85.4 1.1 2.3E-05 42.5 4.2 27 174-201 123-149 (270)
424 PF03029 ATP_bind_1: Conserved 85.2 0.69 1.5E-05 43.1 2.8 20 183-203 1-20 (238)
425 PRK06321 replicative DNA helic 85.2 11 0.00024 38.9 11.8 47 307-356 335-388 (472)
426 PRK05636 replicative DNA helic 85.2 6.7 0.00014 40.9 10.3 51 307-361 374-428 (505)
427 PRK14957 DNA polymerase III su 85.1 5 0.00011 42.1 9.3 19 180-198 40-58 (546)
428 PRK05595 replicative DNA helic 85.1 6 0.00013 40.5 9.9 51 307-361 310-364 (444)
429 cd01125 repA Hexameric Replica 85.0 9.1 0.0002 35.4 10.3 22 180-201 3-24 (239)
430 PRK10917 ATP-dependent DNA hel 85.0 36 0.00078 36.9 16.2 80 233-320 470-561 (681)
431 COG4185 Uncharacterized protei 84.8 0.56 1.2E-05 40.6 1.8 21 181-201 5-25 (187)
432 PF06733 DEAD_2: DEAD_2; Inte 84.7 0.86 1.9E-05 40.1 3.1 45 279-323 114-160 (174)
433 TIGR00416 sms DNA repair prote 84.6 7.1 0.00015 40.1 10.1 24 177-200 93-116 (454)
434 PTZ00110 helicase; Provisional 84.6 3.8 8.2E-05 43.2 8.3 72 233-314 376-451 (545)
435 COG0556 UvrB Helicase subunit 84.6 9.3 0.0002 39.5 10.4 122 233-370 445-570 (663)
436 PRK09435 membrane ATPase/prote 84.3 17 0.00037 35.6 12.1 87 287-373 174-260 (332)
437 PRK13850 type IV secretion sys 84.3 1.3 2.9E-05 47.5 4.8 23 179-201 140-162 (670)
438 COG1219 ClpX ATP-dependent pro 84.3 0.57 1.2E-05 45.1 1.8 41 309-358 218-259 (408)
439 cd00544 CobU Adenosylcobinamid 84.3 11 0.00025 33.0 9.9 14 181-194 2-15 (169)
440 PRK04328 hypothetical protein; 84.1 4.5 9.8E-05 37.9 7.8 53 177-258 22-74 (249)
441 PRK10590 ATP-dependent RNA hel 84.1 4.5 9.7E-05 41.5 8.5 71 234-314 245-319 (456)
442 PRK11776 ATP-dependent RNA hel 84.0 3.8 8.2E-05 42.1 7.9 73 234-316 242-318 (460)
443 COG0513 SrmB Superfamily II DN 84.0 6.3 0.00014 41.2 9.6 68 236-313 275-346 (513)
444 KOG0739 AAA+-type ATPase [Post 83.8 15 0.00033 35.4 10.8 55 310-364 227-284 (439)
445 TIGR03880 KaiC_arch_3 KaiC dom 83.8 6.4 0.00014 36.0 8.6 18 177-194 15-32 (224)
446 TIGR01420 pilT_fam pilus retra 83.8 1.1 2.4E-05 44.2 3.7 19 177-195 121-139 (343)
447 cd00267 ABC_ATPase ABC (ATP-bi 83.6 2.2 4.7E-05 36.7 5.0 48 307-362 97-144 (157)
448 COG0630 VirB11 Type IV secreto 83.4 2.5 5.5E-05 41.1 5.9 57 139-201 108-165 (312)
449 TIGR02237 recomb_radB DNA repa 83.4 5.1 0.00011 36.1 7.7 25 177-201 11-35 (209)
450 TIGR02533 type_II_gspE general 83.4 1.7 3.7E-05 45.0 5.0 42 156-201 221-264 (486)
451 TIGR00614 recQ_fam ATP-depende 83.3 4.9 0.00011 41.4 8.4 74 234-317 226-303 (470)
452 PRK08451 DNA polymerase III su 83.2 4.8 0.0001 42.1 8.2 28 306-337 115-142 (535)
453 PF12846 AAA_10: AAA-like doma 83.0 1.8 3.9E-05 41.1 4.7 21 179-199 2-22 (304)
454 PRK09165 replicative DNA helic 82.8 5 0.00011 41.7 8.2 51 307-361 340-396 (497)
455 CHL00095 clpC Clp protease ATP 82.7 1.1 2.4E-05 49.5 3.6 19 178-196 200-218 (821)
456 KOG2227 Pre-initiation complex 82.6 3.5 7.5E-05 41.9 6.5 19 178-196 175-193 (529)
457 KOG2036 Predicted P-loop ATPas 82.6 7.4 0.00016 41.4 9.0 135 165-359 255-413 (1011)
458 COG2109 BtuR ATP:corrinoid ade 82.6 7 0.00015 34.9 7.7 53 307-366 121-174 (198)
459 PRK07399 DNA polymerase III su 82.6 17 0.00037 35.3 11.4 47 286-337 103-149 (314)
460 TIGR03346 chaperone_ClpB ATP-d 82.5 1.6 3.5E-05 48.5 4.7 19 178-196 194-212 (852)
461 PRK06620 hypothetical protein; 82.4 13 0.00028 34.0 9.9 110 234-360 14-126 (214)
462 PF12775 AAA_7: P-loop contain 82.4 0.79 1.7E-05 43.7 2.0 22 174-195 29-50 (272)
463 TIGR02788 VirB11 P-type DNA tr 82.3 2.2 4.7E-05 41.4 5.0 22 174-195 140-161 (308)
464 KOG0737 AAA+-type ATPase [Post 82.0 6.8 0.00015 38.6 8.1 55 138-195 86-144 (386)
465 cd01393 recA_like RecA is a b 82.0 9.7 0.00021 34.7 9.1 25 177-201 18-42 (226)
466 TIGR03345 VI_ClpV1 type VI sec 81.9 4.5 9.7E-05 45.0 7.8 115 181-363 599-724 (852)
467 PRK01297 ATP-dependent RNA hel 81.8 6 0.00013 40.8 8.4 72 234-315 335-410 (475)
468 TIGR02397 dnaX_nterm DNA polym 81.7 10 0.00022 37.2 9.7 17 179-195 37-53 (355)
469 TIGR02640 gas_vesic_GvpN gas v 81.6 1.5 3.3E-05 41.5 3.5 26 170-195 13-38 (262)
470 cd03221 ABCF_EF-3 ABCF_EF-3 E 81.6 3.4 7.4E-05 35.1 5.5 31 306-336 86-116 (144)
471 PRK14970 DNA polymerase III su 81.5 7.1 0.00015 38.7 8.5 28 306-337 106-133 (367)
472 TIGR03878 thermo_KaiC_2 KaiC d 81.5 7 0.00015 36.8 8.1 24 177-200 35-58 (259)
473 PLN00206 DEAD-box ATP-dependen 81.5 5.1 0.00011 41.9 7.8 72 234-314 367-442 (518)
474 PLN00020 ribulose bisphosphate 81.5 0.82 1.8E-05 45.3 1.7 18 179-196 149-166 (413)
475 PRK05298 excinuclease ABC subu 81.4 20 0.00043 38.7 12.3 78 233-320 445-526 (652)
476 PRK10263 DNA translocase FtsK; 81.3 6.5 0.00014 45.0 8.7 22 180-201 1012-1033(1355)
477 KOG1513 Nuclear helicase MOP-3 81.2 2.9 6.3E-05 44.9 5.6 158 163-364 264-461 (1300)
478 PRK08058 DNA polymerase III su 81.1 17 0.00038 35.5 10.9 29 306-338 108-136 (329)
479 TIGR02639 ClpA ATP-dependent C 81.0 1.3 2.9E-05 48.3 3.3 16 180-195 486-501 (731)
480 PF13555 AAA_29: P-loop contai 80.7 1.2 2.7E-05 32.1 2.0 19 177-195 22-40 (62)
481 PRK11634 ATP-dependent RNA hel 80.6 5.8 0.00013 42.5 7.9 70 235-314 246-319 (629)
482 COG1197 Mfd Transcription-repa 80.6 9 0.0002 43.2 9.4 93 233-337 802-898 (1139)
483 cd00079 HELICc Helicase superf 80.3 12 0.00027 30.2 8.3 75 234-318 28-106 (131)
484 KOG2004 Mitochondrial ATP-depe 80.2 4.2 9.1E-05 43.4 6.4 50 268-324 470-520 (906)
485 PRK08760 replicative DNA helic 80.2 21 0.00046 36.9 11.6 50 307-360 338-391 (476)
486 cd01127 TrwB Bacterial conjuga 80.0 1.6 3.6E-05 44.1 3.4 29 172-201 36-64 (410)
487 PRK10865 protein disaggregatio 79.9 1.8 4E-05 48.1 4.0 18 178-195 199-216 (857)
488 TIGR02655 circ_KaiC circadian 79.8 9.6 0.00021 39.5 9.0 52 178-258 263-314 (484)
489 smart00517 PolyA C-terminal do 79.8 2 4.3E-05 31.2 2.8 42 374-415 22-63 (64)
490 PTZ00424 helicase 45; Provisio 79.8 7.8 0.00017 38.8 8.2 72 234-315 267-342 (401)
491 KOG0331 ATP-dependent RNA heli 79.7 6.7 0.00014 40.6 7.6 73 232-314 339-415 (519)
492 PHA00012 I assembly protein 79.6 15 0.00033 35.8 9.5 58 305-370 78-140 (361)
493 PRK13695 putative NTPase; Prov 79.6 13 0.00029 32.4 8.8 18 180-197 2-19 (174)
494 COG2812 DnaX DNA polymerase II 79.5 2.6 5.5E-05 43.8 4.6 18 180-197 40-57 (515)
495 PRK13822 conjugal transfer cou 79.3 2.8 6.1E-05 44.9 5.0 24 178-201 224-247 (641)
496 KOG2543 Origin recognition com 79.1 8.6 0.00019 38.2 7.7 46 307-360 114-161 (438)
497 PF10412 TrwB_AAD_bind: Type I 79.1 2.1 4.5E-05 43.0 3.7 29 174-203 11-39 (386)
498 PRK13880 conjugal transfer cou 79.0 2 4.4E-05 46.0 3.9 23 179-201 176-198 (636)
499 COG0466 Lon ATP-dependent Lon 78.8 4.5 9.9E-05 43.2 6.2 64 267-336 381-445 (782)
500 COG4604 CeuD ABC-type enteroch 78.8 1.8 3.8E-05 39.1 2.7 34 306-339 151-184 (252)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-48 Score=388.50 Aligned_cols=244 Identities=28% Similarity=0.413 Sum_probs=216.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHh
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQML 221 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l 221 (420)
.|.+++|++.+..+|...||..|||||+.+||.++.|+|+++.|.|||||||+|+||++.++....
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~-------------- 157 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ-------------- 157 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc--------------
Confidence 899999999999999999999999999999999999999999999999999999999999775420
Q ss_pred hhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhc
Q 014666 222 RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~ 301 (420)
.......+|++|||+||||||.||...+..++..++++++|++||.+...|.+.+.++++|+|||||||.++|+.
T Consensus 158 -----~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~ 232 (519)
T KOG0331|consen 158 -----GKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE 232 (519)
T ss_pred -----ccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc
Confidence 011245689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCCCee
Q 014666 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVT 381 (420)
Q Consensus 302 ~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~~~~ 381 (420)
+.+.|+++.||||||||+||||||.++++.|+..++. +..|+++||||+|.+++.++..||.+|..+.++...
T Consensus 233 g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~-------~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~ 305 (519)
T KOG0331|consen 233 GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPR-------PDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKK 305 (519)
T ss_pred CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCC-------CcccEEEEeeeccHHHHHHHHHHhcCceEEEecchh
Confidence 9999999999999999999999999999999999964 456999999999999999999999999988887664
Q ss_pred --eeeeecccceEEeccccHHHHHHHHHHHHhhhh
Q 014666 382 --AMLLEMDQAEVFDLTESQDALKKKVVEAMDSLH 414 (420)
Q Consensus 382 --~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~ 414 (420)
.+...|.|-.. ..+ ..++..++..+|....
T Consensus 306 ~~~a~~~i~qive--~~~-~~~K~~~l~~lL~~~~ 337 (519)
T KOG0331|consen 306 ELKANHNIRQIVE--VCD-ETAKLRKLGKLLEDIS 337 (519)
T ss_pred hhhhhcchhhhhh--hcC-HHHHHHHHHHHHHHHh
Confidence 33444444433 333 4677777777777654
No 2
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-49 Score=382.68 Aligned_cols=223 Identities=28% Similarity=0.414 Sum_probs=207.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
..+|.+|+|+.+|++++..+||..|||||..+||..+-|+|++.||.||||||.||++|+|++++-
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlY-------------- 245 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLY-------------- 245 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhc--------------
Confidence 558999999999999999999999999999999999999999999999999999999999996542
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhch
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
++ .....-++|||+||||||.|++.+.+.++.++.+.+++++||.+...|...|+.+|||||+|||||.+||
T Consensus 246 ---rP-----k~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHl 317 (691)
T KOG0338|consen 246 ---RP-----KKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHL 317 (691)
T ss_pred ---Cc-----ccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHh
Confidence 21 2334568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc-CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 300 ED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 300 ~~-~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
.+ ..+++++|..||+||||+||+.||.++|..|++.++. ++|+++|||||+.++.++++--++.|+.+.++
T Consensus 318 rNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk--------~RQTmLFSATMteeVkdL~slSL~kPvrifvd 389 (691)
T KOG0338|consen 318 RNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPK--------NRQTMLFSATMTEEVKDLASLSLNKPVRIFVD 389 (691)
T ss_pred ccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccc--------cccceeehhhhHHHHHHHHHhhcCCCeEEEeC
Confidence 88 5789999999999999999999999999999999985 89999999999999999999999999999998
Q ss_pred CeeeeeeecccceE
Q 014666 379 KVTAMLLEMDQAEV 392 (420)
Q Consensus 379 ~~~~~~~~v~~~~~ 392 (420)
+-........|.++
T Consensus 390 ~~~~~a~~LtQEFi 403 (691)
T KOG0338|consen 390 PNKDTAPKLTQEFI 403 (691)
T ss_pred CccccchhhhHHHh
Confidence 88888888777755
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-48 Score=361.11 Aligned_cols=228 Identities=27% Similarity=0.386 Sum_probs=213.7
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhh
Q 014666 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVG 216 (420)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~ 216 (420)
.....+|.+||+.+.+++++.+.|+..||+||+++||.++.|+|||+.|.||||||.+|+||+++++++.
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~---------- 126 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE---------- 126 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC----------
Confidence 4456789999999999999999999999999999999999999999999999999999999999976542
Q ss_pred hHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHH
Q 014666 217 ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL 296 (420)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~ 296 (420)
+..+++|||+||||||.||...+..++...|+++++++||+....|...+.+.|+|||||||+||
T Consensus 127 ---------------p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~ 191 (476)
T KOG0330|consen 127 ---------------PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLW 191 (476)
T ss_pred ---------------CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHH
Confidence 24589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhc-CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 297 QHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 297 ~~l~~-~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
+++.+ +.+.+..+++||+||||++||+.|.+.+.+|+..++. .+|+++||||||..+..+.+.-+.+|..+
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~--------erqt~LfsATMt~kv~kL~rasl~~p~~v 263 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPR--------ERQTFLFSATMTKKVRKLQRASLDNPVKV 263 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCc--------cceEEEEEeecchhhHHHHhhccCCCeEE
Confidence 99994 7899999999999999999999999999999999984 89999999999999999999999999999
Q ss_pred cCCCeeeeeeecccceEEeccc
Q 014666 376 NAGKVTAMLLEMDQAEVFDLTE 397 (420)
Q Consensus 376 ~~~~~~~~~~~v~~~~~~~~~~ 397 (420)
.+.+....+..+.|.+.|....
T Consensus 264 ~~s~ky~tv~~lkQ~ylfv~~k 285 (476)
T KOG0330|consen 264 AVSSKYQTVDHLKQTYLFVPGK 285 (476)
T ss_pred eccchhcchHHhhhheEecccc
Confidence 9999999999999998876543
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-44 Score=372.82 Aligned_cols=226 Identities=27% Similarity=0.389 Sum_probs=203.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
..|++|+|++.++++|.++||..|||||..+||.++.|+|++++|+||||||+||++|++++|...
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-------------- 94 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-------------- 94 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc--------------
Confidence 679999999999999999999999999999999999999999999999999999999999965321
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhch
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
.....+.+|||+||||||.||++.+..++.+. ++++++++||.+...|...+..+++|||||||||++++
T Consensus 95 ---------~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i 165 (513)
T COG0513 95 ---------VERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLI 165 (513)
T ss_pred ---------cccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHH
Confidence 00111129999999999999999999999999 79999999999999999999989999999999999999
Q ss_pred hcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCCC
Q 014666 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGK 379 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~~ 379 (420)
.++.++++.+++||+||||+||++||.+++..|+..++. ++|+++||||+|..+..+++.+|++|..+.+..
T Consensus 166 ~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~--------~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~ 237 (513)
T COG0513 166 KRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP--------DRQTLLFSATMPDDIRELARRYLNDPVEIEVSV 237 (513)
T ss_pred HcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc--------ccEEEEEecCCCHHHHHHHHHHccCCcEEEEcc
Confidence 999999999999999999999999999999999999984 799999999999999999999999998877763
Q ss_pred eee--eeeecccceEEeccc
Q 014666 380 VTA--MLLEMDQAEVFDLTE 397 (420)
Q Consensus 380 ~~~--~~~~v~~~~~~~~~~ 397 (420)
... ....|.|.++++...
T Consensus 238 ~~~~~~~~~i~q~~~~v~~~ 257 (513)
T COG0513 238 EKLERTLKKIKQFYLEVESE 257 (513)
T ss_pred ccccccccCceEEEEEeCCH
Confidence 333 667777776665443
No 5
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-44 Score=349.27 Aligned_cols=253 Identities=24% Similarity=0.371 Sum_probs=232.9
Q ss_pred CCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhh
Q 014666 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHL 212 (420)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~ 212 (420)
..+.+.++++|..+|.+..|+.++....|+.|||||+.++|..+.|+||+..|.||||||.||+.|++-+|+....
T Consensus 215 g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~e---- 290 (731)
T KOG0339|consen 215 GSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE---- 290 (731)
T ss_pred cCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhh----
Confidence 3456778999999999999999999999999999999999999999999999999999999999999997764322
Q ss_pred hhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeCh
Q 014666 213 QLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATP 292 (420)
Q Consensus 213 ~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 292 (420)
+ ....+|.+|||||||+||.||+..+++|++..+++++++|||.+..+|...|..+|.||||||
T Consensus 291 --------------L--~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTP 354 (731)
T KOG0339|consen 291 --------------L--KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATP 354 (731)
T ss_pred --------------h--cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEech
Confidence 1 135789999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcc
Q 014666 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372 (420)
Q Consensus 293 ~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~ 372 (420)
|||++++..+..++.++.||||||||+|+++||..++..|..++. +++|+|+||||++..+..+++.+|.+|
T Consensus 355 gRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir--------pdrQtllFsaTf~~kIe~lard~L~dp 426 (731)
T KOG0339|consen 355 GRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR--------PDRQTLLFSATFKKKIEKLARDILSDP 426 (731)
T ss_pred HHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC--------CcceEEEeeccchHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999997 699999999999999999999999999
Q ss_pred hhccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhhh
Q 014666 373 ERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHL 415 (420)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~ 415 (420)
++++.+.+...-.+|.|...++..+ +.++..|...|..+..
T Consensus 427 VrvVqg~vgean~dITQ~V~V~~s~--~~Kl~wl~~~L~~f~S 467 (731)
T KOG0339|consen 427 VRVVQGEVGEANEDITQTVSVCPSE--EKKLNWLLRHLVEFSS 467 (731)
T ss_pred eeEEEeehhccccchhheeeeccCc--HHHHHHHHHHhhhhcc
Confidence 9999999999999999987776655 7777777777766544
No 6
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-44 Score=352.98 Aligned_cols=219 Identities=28% Similarity=0.452 Sum_probs=186.3
Q ss_pred CCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcC-CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhh
Q 014666 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHH 211 (420)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g-~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~ 211 (420)
..+...+++.|.+|+||..++++|..+||..||+||..+||++..| .|+++.|.||||||+||.|||++.+.+......
T Consensus 173 ~~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~ 252 (731)
T KOG0347|consen 173 DDSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ 252 (731)
T ss_pred ccccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh
Confidence 4455677899999999999999999999999999999999999888 899999999999999999999996654332111
Q ss_pred hhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeC
Q 014666 212 LQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIAT 291 (420)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~T 291 (420)
.+.... .....|.+||++||||||.||.+++..++.++++++..++||.+...|.+.++..|+|||||
T Consensus 253 --------e~~~~~----~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVAT 320 (731)
T KOG0347|consen 253 --------ELSNTS----AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVAT 320 (731)
T ss_pred --------hhhhHH----hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEec
Confidence 111111 11123359999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhchhcCcc---cCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHH
Q 014666 292 PSEVLQHIEDRNV---SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366 (420)
Q Consensus 292 P~~L~~~l~~~~~---~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~ 366 (420)
|||||.++..+.. .+.+++||||||||+|++.|+++++..|+.+|+.. +....+|+++||||++-....-+.
T Consensus 321 PGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~---~~~~qrQTlVFSATlt~~~~~~~~ 395 (731)
T KOG0347|consen 321 PGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEE---QKNRQRQTLVFSATLTLVLQQPLS 395 (731)
T ss_pred chHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhh---hcccccceEEEEEEeehhhcChhH
Confidence 9999999998765 46789999999999999999999999999999832 334578999999999865444333
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=5e-43 Score=339.65 Aligned_cols=259 Identities=27% Similarity=0.366 Sum_probs=231.9
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhh
Q 014666 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLV 215 (420)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~ 215 (420)
.+.++.+|++.++|..++..+...||..|||||..+||..++.+|+|+.|.||||||++|++|++.+|.....-
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~------ 313 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPM------ 313 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCc------
Confidence 46789999999999999999999999999999999999999999999999999999999999999987654320
Q ss_pred hhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH
Q 014666 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295 (420)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L 295 (420)
+.+.....+|+++|++|||+||+||......|++.++++++.++||.+..+|.-.+..+|+|+|||||+|
T Consensus 314 ----------~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrL 383 (673)
T KOG0333|consen 314 ----------ARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRL 383 (673)
T ss_pred ----------chhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHH
Confidence 0111234689999999999999999999999999999999999999999999888999999999999999
Q ss_pred HhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccC-----CC------------CceEEEEeeccc
Q 014666 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSN-----GQ------------GFQTILVTAAIA 358 (420)
Q Consensus 296 ~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~-----~~------------~~Q~v~~SATl~ 358 (420)
.+.|.+..+.++.+.+||+||||+|+||||.+++..||..+|....++. +. -+|+++||||||
T Consensus 384 id~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~ 463 (673)
T KOG0333|consen 384 IDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMP 463 (673)
T ss_pred HHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCC
Confidence 9999999999999999999999999999999999999999987554421 11 299999999999
Q ss_pred chHHHHHHHHhhcchhccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhh
Q 014666 359 EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413 (420)
Q Consensus 359 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l 413 (420)
+.+..+++.||++|+.+++|..+.....+.|.++. +.+ +...++|.++|...
T Consensus 464 p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m-~~e--d~k~kkL~eil~~~ 515 (673)
T KOG0333|consen 464 PAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEM-VSE--DEKRKKLIEILESN 515 (673)
T ss_pred hHHHHHHHHHhhCCeEEEeccCCCCccchheEEEE-ecc--hHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998664 444 55588999998874
No 8
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-43 Score=341.29 Aligned_cols=237 Identities=25% Similarity=0.358 Sum_probs=206.8
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhh
Q 014666 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVG 216 (420)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~ 216 (420)
...+..|.+|+|+..++++|++.+|..||.||+.+||..+.|+|||+.|.||||||+||++|+|+++++.
T Consensus 65 ~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~---------- 134 (758)
T KOG0343|consen 65 STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL---------- 134 (758)
T ss_pred hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc----------
Confidence 4567789999999999999999999999999999999999999999999999999999999999977542
Q ss_pred hHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHH
Q 014666 217 ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL 296 (420)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~ 296 (420)
.+....|.-||||.||||||.|++.++..++++..+.+++++||.........+ ++++|||||||||+
T Consensus 135 -----------kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLL 202 (758)
T KOG0343|consen 135 -----------KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLL 202 (758)
T ss_pred -----------CCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHH
Confidence 233446778999999999999999999999999999999999999977665555 45899999999999
Q ss_pred hchhcC-cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 297 QHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 297 ~~l~~~-~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
+||... .++.+++.+|||||||+||||||...+..|+..||. .+||++||||-+..+..+++--+.+|..|
T Consensus 203 QHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~--------~RQTLLFSATqt~svkdLaRLsL~dP~~v 274 (758)
T KOG0343|consen 203 QHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPK--------KRQTLLFSATQTKSVKDLARLSLKDPVYV 274 (758)
T ss_pred HHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCCh--------hheeeeeecccchhHHHHHHhhcCCCcEE
Confidence 999874 678999999999999999999999999999999984 88999999999999999999999999888
Q ss_pred cCC--CeeeeeeecccceEEecc-ccHHHHH
Q 014666 376 NAG--KVTAMLLEMDQAEVFDLT-ESQDALK 403 (420)
Q Consensus 376 ~~~--~~~~~~~~v~~~~~~~~~-~~~~~~~ 403 (420)
.+. .+..+..+..|.++++-+ +..+.++
T Consensus 275 svhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~ 305 (758)
T KOG0343|consen 275 SVHENAVAATPSNLQQSYVIVPLEDKIDMLW 305 (758)
T ss_pred EEeccccccChhhhhheEEEEehhhHHHHHH
Confidence 554 345556666666665543 3334443
No 9
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.3e-43 Score=332.55 Aligned_cols=255 Identities=25% Similarity=0.419 Sum_probs=229.3
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhh
Q 014666 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQ 213 (420)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~ 213 (420)
...+.++.+|.++..|..+++.|++.|+..|||||.+-||.++.|+|.|+.|-||||||++|.+|++-+-++.
T Consensus 163 d~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~Leq------- 235 (610)
T KOG0341|consen 163 DDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQ------- 235 (610)
T ss_pred CCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHH-------
Confidence 3456789999999999999999999999999999999999999999999999999999999999998744332
Q ss_pred hhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhc------cCCCceecccCCCChHHHHHHhcCCCcE
Q 014666 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH------CARLDSSMENGGVSSKALEDVSNAPIGM 287 (420)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~------~~~i~~~~~~gg~~~~~~~~~l~~~~~I 287 (420)
...+.-....+|.+|||||+||||.|.+..+..+.. +..++++++.||.+..+|....+.|.+|
T Consensus 236 ----------E~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHi 305 (610)
T KOG0341|consen 236 ----------EMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHI 305 (610)
T ss_pred ----------HhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeE
Confidence 112223356789999999999999999988877643 3458899999999999999999999999
Q ss_pred EEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHH
Q 014666 288 LIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSS 367 (420)
Q Consensus 288 lV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~ 367 (420)
+|+|||||.+++..+.++|.-++||++||||+|+|+||.+++..|+.++.. .+||++||||||..++.|++.
T Consensus 306 vVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~--------QRQTLLFSATMP~KIQ~FAkS 377 (610)
T KOG0341|consen 306 VVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKG--------QRQTLLFSATMPKKIQNFAKS 377 (610)
T ss_pred EEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhh--------hhheeeeeccccHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999984 789999999999999999999
Q ss_pred HhhcchhccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhhhcCCC
Q 014666 368 LMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLSAPG 419 (420)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~~~p~ 419 (420)
.+..|+.+.+|....+.++|.|..-|+-- ..|+..+|.+|+.++||
T Consensus 378 ALVKPvtvNVGRAGAAsldViQevEyVkq------EaKiVylLeCLQKT~Pp 423 (610)
T KOG0341|consen 378 ALVKPVTVNVGRAGAASLDVIQEVEYVKQ------EAKIVYLLECLQKTSPP 423 (610)
T ss_pred hcccceEEecccccccchhHHHHHHHHHh------hhhhhhHHHHhccCCCc
Confidence 99999999999999999999998766432 35888899999999998
No 10
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-42 Score=328.76 Aligned_cols=241 Identities=23% Similarity=0.314 Sum_probs=201.4
Q ss_pred cccccCCCC--HHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 141 SSFQELGLK--AEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 141 ~~f~~l~l~--~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
.+|++|+.+ +++++++..+||..+||+|..+||.++.++||++.|+||||||+||++|++..|++...
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~---------- 73 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREA---------- 73 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhcc----------
Confidence 468888755 99999999999999999999999999999999999999999999999999995543221
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhcc-CCCceecccCCCChHHHHHHh-cCCCcEEEeChhHHH
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC-ARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVL 296 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~-~~i~~~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~L~ 296 (420)
.. .+...-+|||+||||||.||++++..|... .++.+.+++||.........+ ..+++|+|||||||.
T Consensus 74 -------~~---~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~ 143 (567)
T KOG0345|consen 74 -------KT---PPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLL 143 (567)
T ss_pred -------CC---CccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHH
Confidence 11 112356999999999999999999988776 689999999999887776655 467999999999999
Q ss_pred hchhcCc--ccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchh
Q 014666 297 QHIEDRN--VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374 (420)
Q Consensus 297 ~~l~~~~--~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~ 374 (420)
+++++.. +++.++.+||+||||+++||||..++..|+..||. .++|-+||||...++.++++..++||..
T Consensus 144 di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPK--------QRRTGLFSATq~~~v~dL~raGLRNpv~ 215 (567)
T KOG0345|consen 144 DILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPK--------QRRTGLFSATQTQEVEDLARAGLRNPVR 215 (567)
T ss_pred HHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhccc--------ccccccccchhhHHHHHHHHhhccCcee
Confidence 9999843 45669999999999999999999999999999996 7899999999999999999999999999
Q ss_pred ccCCCeee--eeeecccceEEeccccHHHHHHHHHHHHhhhhh
Q 014666 375 DNAGKVTA--MLLEMDQAEVFDLTESQDALKKKVVEAMDSLHL 415 (420)
Q Consensus 375 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~ 415 (420)
|.++.... +...+...+.+|-. ..|+..+++.|++
T Consensus 216 V~V~~k~~~~tPS~L~~~Y~v~~a------~eK~~~lv~~L~~ 252 (567)
T KOG0345|consen 216 VSVKEKSKSATPSSLALEYLVCEA------DEKLSQLVHLLNN 252 (567)
T ss_pred eeecccccccCchhhcceeeEecH------HHHHHHHHHHHhc
Confidence 98876665 44445445554322 2255566666654
No 11
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-42 Score=336.21 Aligned_cols=222 Identities=25% Similarity=0.444 Sum_probs=193.5
Q ss_pred CcccccccccCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhh
Q 014666 136 NAEVVSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214 (420)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~ 214 (420)
.+....+|..|||++.++..|.. +++..||.||+++||.+++|+|+++.|+||||||++|++|+++.|+.....
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~k----- 205 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPK----- 205 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcc-----
Confidence 34455689999999999999977 799999999999999999999999999999999999999999966543321
Q ss_pred hhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhcc-CCCceecccCCCChHHHHHHhcCCCcEEEeChh
Q 014666 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC-ARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293 (420)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~-~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 293 (420)
. .+..|+.||||+||||||.|+|+.+..+.+. +.|..+.+.||.........+++|++|||||||
T Consensus 206 -------------i-~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPG 271 (708)
T KOG0348|consen 206 -------------I-QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPG 271 (708)
T ss_pred -------------c-cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCch
Confidence 1 1457899999999999999999999998764 457788899999998889999999999999999
Q ss_pred HHHhchhc-CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhh----hcccC-CCCceEEEEeecccchHHHHHHH
Q 014666 294 EVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS----ALKSN-GQGFQTILVTAAIAEMLGEQLSS 367 (420)
Q Consensus 294 ~L~~~l~~-~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~----~~~~~-~~~~Q~v~~SATl~~~v~~~~~~ 367 (420)
||+++|++ ..+.+++++||||||||++++.||...|..|+..+..+ +.++. ....|.+++||||+.-|..++..
T Consensus 272 RLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~ 351 (708)
T KOG0348|consen 272 RLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADL 351 (708)
T ss_pred HHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhc
Confidence 99999998 57889999999999999999999999999999998442 22211 12489999999999999999999
Q ss_pred Hhhcchhcc
Q 014666 368 LMECLERDN 376 (420)
Q Consensus 368 ~~~~~~~~~ 376 (420)
-+.||..+.
T Consensus 352 sLkDpv~I~ 360 (708)
T KOG0348|consen 352 SLKDPVYIS 360 (708)
T ss_pred cccCceeee
Confidence 999997665
No 12
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7.1e-42 Score=330.18 Aligned_cols=234 Identities=26% Similarity=0.378 Sum_probs=202.7
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhh
Q 014666 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214 (420)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~ 214 (420)
++......|.++.|++..++++.++||..+|++|+.+||.++.|+|+++.|.||||||+||+||+++.+.+...
T Consensus 76 ~s~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~------ 149 (543)
T KOG0342|consen 76 DSITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF------ 149 (543)
T ss_pred cchhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhccc------
Confidence 34445667999999999999999999999999999999999999999999999999999999999997765432
Q ss_pred hhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeChh
Q 014666 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293 (420)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 293 (420)
...++..+|||+||||||.|++.+++.+..+. ++.+.+++||.......+.+.++|+|+|+|||
T Consensus 150 ---------------~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPG 214 (543)
T KOG0342|consen 150 ---------------KPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPG 214 (543)
T ss_pred ---------------CCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCc
Confidence 12256689999999999999999999999998 99999999999988888888889999999999
Q ss_pred HHHhchhcC-cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc-
Q 014666 294 EVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC- 371 (420)
Q Consensus 294 ~L~~~l~~~-~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~- 371 (420)
||.+||++. .+.+.++++||+||||++|++||.++|+.|+..++. .+|+++||||+++.|.++++-.|..
T Consensus 215 RLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk--------~rqt~LFSAT~~~kV~~l~~~~L~~d 286 (543)
T KOG0342|consen 215 RLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPK--------QRQTLLFSATQPSKVKDLARGALKRD 286 (543)
T ss_pred hHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccc--------cceeeEeeCCCcHHHHHHHHHhhcCC
Confidence 999999984 556778899999999999999999999999999995 8899999999999999999877765
Q ss_pred chhcc--CCCeeeeeeecccceEEeccc
Q 014666 372 LERDN--AGKVTAMLLEMDQAEVFDLTE 397 (420)
Q Consensus 372 ~~~~~--~~~~~~~~~~v~~~~~~~~~~ 397 (420)
|..+. -+......-.++|.++++-.+
T Consensus 287 ~~~v~~~d~~~~~The~l~Qgyvv~~~~ 314 (543)
T KOG0342|consen 287 PVFVNVDDGGERETHERLEQGYVVAPSD 314 (543)
T ss_pred ceEeecCCCCCcchhhcccceEEecccc
Confidence 55443 234445556677766665443
No 13
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-42 Score=335.56 Aligned_cols=255 Identities=24% Similarity=0.365 Sum_probs=220.9
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhh
Q 014666 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214 (420)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~ 214 (420)
+.+..+..|.+-.+.+.+..++...||+.|||||+.+||.+..|+|+++||+||||||.||++|++.++++......
T Consensus 68 ~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~--- 144 (482)
T KOG0335|consen 68 DVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDR--- 144 (482)
T ss_pred ccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccC---
Confidence 34456668999999999999999999999999999999999999999999999999999999999996654322111
Q ss_pred hhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhH
Q 014666 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294 (420)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~ 294 (420)
........|++||++||||||.|+|+.++++.-..+++++..|||.+...+.+.+.++|+|+||||||
T Consensus 145 ------------~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGr 212 (482)
T KOG0335|consen 145 ------------GESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGR 212 (482)
T ss_pred ------------cccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCch
Confidence 11112246999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhcCcccCCCceEEEecCcchhhc-cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc-c
Q 014666 295 VLQHIEDRNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC-L 372 (420)
Q Consensus 295 L~~~l~~~~~~l~~l~~lVlDEaD~~l~-~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~-~ 372 (420)
|.+++..+.+.|+++++|||||||+|+| ++|+++|+.|+..+.- +....+|+++||||+|.++..++..|+.+ +
T Consensus 213 L~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~----~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~y 288 (482)
T KOG0335|consen 213 LKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGM----PPKNNRQTLLFSATFPKEIQRLAADFLKDNY 288 (482)
T ss_pred hhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCC----CCccceeEEEEeccCChhhhhhHHHHhhccc
Confidence 9999999999999999999999999999 9999999999987743 12247999999999999999999999997 8
Q ss_pred hhccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHh
Q 014666 373 ERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMD 411 (420)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~ 411 (420)
..+.++.+.....++.|...++.- ..++.++.+.+.
T Consensus 289 i~laV~rvg~~~~ni~q~i~~V~~---~~kr~~Lldll~ 324 (482)
T KOG0335|consen 289 IFLAVGRVGSTSENITQKILFVNE---MEKRSKLLDLLN 324 (482)
T ss_pred eEEEEeeeccccccceeEeeeecc---hhhHHHHHHHhh
Confidence 899999999999999999776532 334444444444
No 14
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=319.82 Aligned_cols=234 Identities=26% Similarity=0.332 Sum_probs=205.0
Q ss_pred Cccccccccc-CCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhh
Q 014666 136 NAEVVSSFQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214 (420)
Q Consensus 136 ~~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~ 214 (420)
-+.+.-+|++ |.-.+.+++.+.+.||.+|||||.++||.+++|.|+++.|.||+|||++|++|-+-+|.-.....
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~---- 289 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR---- 289 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh----
Confidence 3566778887 67899999999999999999999999999999999999999999999999999887664322111
Q ss_pred hhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhH
Q 014666 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294 (420)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~ 294 (420)
....+|.+|+++||||||.|+.-.+..+. +.+++..|++||.+..+|...++.+.+|+|+|||+
T Consensus 290 ---------------~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgr 353 (629)
T KOG0336|consen 290 ---------------EQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGR 353 (629)
T ss_pred ---------------hccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCch
Confidence 13468999999999999999988887764 55899999999999999999999999999999999
Q ss_pred HHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchh
Q 014666 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374 (420)
Q Consensus 295 L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~ 374 (420)
|.++...+.++|.++.||||||||+||||||.++|..|+--+. +++|+++.|||+|+-+..++..|+++|.+
T Consensus 354 lndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR--------PDRqtvmTSATWP~~VrrLa~sY~Kep~~ 425 (629)
T KOG0336|consen 354 LNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR--------PDRQTVMTSATWPEGVRRLAQSYLKEPMI 425 (629)
T ss_pred HhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC--------CcceeeeecccCchHHHHHHHHhhhCceE
Confidence 9999999999999999999999999999999999999998775 69999999999999999999999999999
Q ss_pred ccCCCeeeeeeecccceEEeccc
Q 014666 375 DNAGKVTAMLLEMDQAEVFDLTE 397 (420)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~~~~~~ 397 (420)
+++|+..-+.+.---..+++-++
T Consensus 426 v~vGsLdL~a~~sVkQ~i~v~~d 448 (629)
T KOG0336|consen 426 VYVGSLDLVAVKSVKQNIIVTTD 448 (629)
T ss_pred EEecccceeeeeeeeeeEEeccc
Confidence 99998876555443333444444
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-40 Score=345.50 Aligned_cols=249 Identities=24% Similarity=0.364 Sum_probs=207.9
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhh
Q 014666 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQ 213 (420)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~ 213 (420)
...+.++.+|.++++++.++++|..+||..|||||.++||.++.|+|+|++||||||||++|++|++.++.....
T Consensus 123 ~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~----- 197 (545)
T PTZ00110 123 ENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPL----- 197 (545)
T ss_pred CCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhccc-----
Confidence 345667889999999999999999999999999999999999999999999999999999999999986532100
Q ss_pred hhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChh
Q 014666 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293 (420)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 293 (420)
.....+|++|||+||||||.|++..+..++...++++.+++||.....+...+..+++|||+||+
T Consensus 198 ---------------~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPg 262 (545)
T PTZ00110 198 ---------------LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPG 262 (545)
T ss_pred ---------------ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHH
Confidence 01235789999999999999999999999999999999999999988888888899999999999
Q ss_pred HHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh-cc
Q 014666 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME-CL 372 (420)
Q Consensus 294 ~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~-~~ 372 (420)
+|.+++.++...+.++++|||||||+|++++|..++..|+..++ +++|+++||||+|.++..+++.++. ++
T Consensus 263 rL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~--------~~~q~l~~SAT~p~~v~~l~~~l~~~~~ 334 (545)
T PTZ00110 263 RLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR--------PDRQTLMWSATWPKEVQSLARDLCKEEP 334 (545)
T ss_pred HHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC--------CCCeEEEEEeCCCHHHHHHHHHHhccCC
Confidence 99999999888999999999999999999999999999999886 4789999999999999999999986 46
Q ss_pred hhccCCCee-eeeeecccceEEeccccHHHHHHHHHHHHhhh
Q 014666 373 ERDNAGKVT-AMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413 (420)
Q Consensus 373 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l 413 (420)
..+.++.+. .....+.+...+ +.+ ..+..++..++..+
T Consensus 335 v~i~vg~~~l~~~~~i~q~~~~-~~~--~~k~~~L~~ll~~~ 373 (545)
T PTZ00110 335 VHVNVGSLDLTACHNIKQEVFV-VEE--HEKRGKLKMLLQRI 373 (545)
T ss_pred EEEEECCCccccCCCeeEEEEE-Eec--hhHHHHHHHHHHHh
Confidence 666665544 222334333322 222 33444555555443
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.2e-40 Score=338.99 Aligned_cols=248 Identities=23% Similarity=0.383 Sum_probs=207.9
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhh
Q 014666 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214 (420)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~ 214 (420)
..+.++.+|.+++|++.++++|...||..|||||.++||.++.|+|++++||||||||++|++|++.++......
T Consensus 115 ~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~----- 189 (518)
T PLN00206 115 AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSG----- 189 (518)
T ss_pred CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccc-----
Confidence 456788999999999999999999999999999999999999999999999999999999999999866432110
Q ss_pred hhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhH
Q 014666 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294 (420)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~ 294 (420)
......++++|||+|||+||.|++..+..+....++++.+++||.....+...+..+++|||||||+
T Consensus 190 -------------~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgr 256 (518)
T PLN00206 190 -------------HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGR 256 (518)
T ss_pred -------------cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHH
Confidence 0112357899999999999999999999999988999999999999888888888899999999999
Q ss_pred HHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchh
Q 014666 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374 (420)
Q Consensus 295 L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~ 374 (420)
|.+++.++.+.++++++|||||||+|+++||..++..|+..++ ++|+++||||+++++..++..++.++..
T Consensus 257 L~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~---------~~q~l~~SATl~~~v~~l~~~~~~~~~~ 327 (518)
T PLN00206 257 LIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS---------QPQVLLFSATVSPEVEKFASSLAKDIIL 327 (518)
T ss_pred HHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC---------CCcEEEEEeeCCHHHHHHHHHhCCCCEE
Confidence 9999999888999999999999999999999999999998874 6799999999999999999999999887
Q ss_pred ccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhh
Q 014666 375 DNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDS 412 (420)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~ 412 (420)
+.++........+.+...++. ......++.+++..
T Consensus 328 i~~~~~~~~~~~v~q~~~~~~---~~~k~~~l~~~l~~ 362 (518)
T PLN00206 328 ISIGNPNRPNKAVKQLAIWVE---TKQKKQKLFDILKS 362 (518)
T ss_pred EEeCCCCCCCcceeEEEEecc---chhHHHHHHHHHHh
Confidence 766654443333333333221 12334455555543
No 17
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-41 Score=302.66 Aligned_cols=210 Identities=25% Similarity=0.393 Sum_probs=196.6
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhh
Q 014666 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214 (420)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~ 214 (420)
....+..+|+++||++.+++++...||.+|+.||+.|||.|++|+||+++|.+|+|||.+|.+.+++.+
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~----------- 89 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSL----------- 89 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeec-----------
Confidence 445678899999999999999999999999999999999999999999999999999999999998832
Q ss_pred hhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhH
Q 014666 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294 (420)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~ 294 (420)
+...+..++|||.||||||.|+..++..++.+.++.+..+.||.+..+..+.+..|++++.|||||
T Consensus 90 --------------d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGr 155 (400)
T KOG0328|consen 90 --------------DISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGR 155 (400)
T ss_pred --------------ccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCch
Confidence 223345789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchh
Q 014666 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374 (420)
Q Consensus 295 L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~ 374 (420)
++++++++.+....+++|||||||.||+.||.+++..|++.|+ ++.|++++|||+|.++.++...||.+|+.
T Consensus 156 v~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp--------~~~Qvv~~SATlp~eilemt~kfmtdpvr 227 (400)
T KOG0328|consen 156 VLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP--------PGAQVVLVSATLPHEILEMTEKFMTDPVR 227 (400)
T ss_pred HHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC--------CCceEEEEeccCcHHHHHHHHHhcCCcee
Confidence 9999999999999999999999999999999999999999998 58999999999999999999999999977
Q ss_pred ccC
Q 014666 375 DNA 377 (420)
Q Consensus 375 ~~~ 377 (420)
+.+
T Consensus 228 ilv 230 (400)
T KOG0328|consen 228 ILV 230 (400)
T ss_pred EEE
Confidence 644
No 18
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=316.15 Aligned_cols=209 Identities=26% Similarity=0.406 Sum_probs=189.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
.+|++|||++++++++.++||..||-||..+||.++.|+|+++.|+||||||.||+||+++.|+......
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~---------- 88 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN---------- 88 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc----------
Confidence 5899999999999999999999999999999999999999999999999999999999999776543211
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCC--CceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~--i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
....+|.++||+||||||.|+|.++..+..+++ ++++-+...++.......+...|+|||+||++|+.+
T Consensus 89 ---------~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 89 ---------DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred ---------cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHH
Confidence 245789999999999999999999999988776 666667767776666677888899999999999999
Q ss_pred hhcCc-ccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhcc
Q 014666 299 IEDRN-VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376 (420)
Q Consensus 299 l~~~~-~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~ 376 (420)
+..+. ..+..+++||+||||.|+..||.+++..|..+||. ..|.++||||++.++..+-+.+|+||.++.
T Consensus 160 ~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr--------~~Q~~LmSATl~dDv~~LKkL~l~nPviLk 230 (569)
T KOG0346|consen 160 LAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPR--------IYQCFLMSATLSDDVQALKKLFLHNPVILK 230 (569)
T ss_pred HhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCc--------hhhheeehhhhhhHHHHHHHHhccCCeEEE
Confidence 99887 67889999999999999999999999999999995 789999999999999999999999998863
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-39 Score=329.48 Aligned_cols=217 Identities=24% Similarity=0.337 Sum_probs=193.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
.+|++|+|++.++++|..+||..|||||.++||.++.|+|++++||||||||++|++|+++.++....
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~------------ 75 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPA------------ 75 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccc------------
Confidence 57999999999999999999999999999999999999999999999999999999999996643211
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchh
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~ 300 (420)
.......++++|||+|||+||.|++..+..++...++++..++||.....+...+..+++||||||++|++++.
T Consensus 76 ------~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~ 149 (423)
T PRK04837 76 ------PEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK 149 (423)
T ss_pred ------ccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 00112356899999999999999999999999999999999999999888888888899999999999999999
Q ss_pred cCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCCCe
Q 014666 301 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKV 380 (420)
Q Consensus 301 ~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~~~ 380 (420)
++.+.++++++|||||||+|++++|..++..|+..++.. ..+|+++||||++..+..++..++.+|..+.+...
T Consensus 150 ~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~------~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~ 223 (423)
T PRK04837 150 QNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPE 223 (423)
T ss_pred cCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCc------cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCC
Confidence 988999999999999999999999999999999988642 35789999999999999999999999877655433
Q ss_pred e
Q 014666 381 T 381 (420)
Q Consensus 381 ~ 381 (420)
.
T Consensus 224 ~ 224 (423)
T PRK04837 224 Q 224 (423)
T ss_pred C
Confidence 3
No 20
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=308.56 Aligned_cols=240 Identities=22% Similarity=0.296 Sum_probs=201.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
.+..|+.|||++++.+.|+.+|+..|||||..|||.|+.|+|+|++|.||||||++|.+|++++|.+
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse------------- 71 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE------------- 71 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc-------------
Confidence 4568999999999999999999999999999999999999999999999999999999999996543
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
.+.+-.+||++||||||.|+.+.|..+++..++++++++||+..-.|...|...|||||+|||||.++
T Consensus 72 ------------dP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~ 139 (442)
T KOG0340|consen 72 ------------DPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADH 139 (442)
T ss_pred ------------CCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC----cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcc--
Q 014666 299 IEDR----NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL-- 372 (420)
Q Consensus 299 l~~~----~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~-- 372 (420)
+... .+.+.+++++|+||||+|++..|.++++-|++.+|. .+|+++||||++..+.++..--.+.+
T Consensus 140 l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~--------~RQtLlfSATitd~i~ql~~~~i~k~~a 211 (442)
T KOG0340|consen 140 LSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPK--------PRQTLLFSATITDTIKQLFGCPITKSIA 211 (442)
T ss_pred cccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCC--------ccceEEEEeehhhHHHHhhcCCcccccc
Confidence 9875 346889999999999999999999999999999984 68999999999998887765444431
Q ss_pred hhccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhh
Q 014666 373 ERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLH 414 (420)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~ 414 (420)
....+..-..++-...|.++++- .+.+...+..+|+.+.
T Consensus 212 ~~~e~~~~vstvetL~q~yI~~~---~~vkdaYLv~~Lr~~~ 250 (442)
T KOG0340|consen 212 FELEVIDGVSTVETLYQGYILVS---IDVKDAYLVHLLRDFE 250 (442)
T ss_pred eEEeccCCCCchhhhhhheeecc---hhhhHHHHHHHHhhhh
Confidence 12222222333445556666542 2444555555555443
No 21
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-40 Score=340.94 Aligned_cols=250 Identities=24% Similarity=0.354 Sum_probs=222.0
Q ss_pred CCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhh
Q 014666 134 GSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQ 213 (420)
Q Consensus 134 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~ 213 (420)
...+.++.+|.+.|++..++..++.+||..|||||.+|||+|+.|+|||++|.||||||++|++|++.++.-.+.
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~----- 432 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP----- 432 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC-----
Confidence 445678999999999999999999999999999999999999999999999999999999999999976532211
Q ss_pred hhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChh
Q 014666 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293 (420)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 293 (420)
.....||.+||++|||+||.||++.++.|++.++++++++|||.....+...+++++.|+|||||
T Consensus 433 ---------------~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpG 497 (997)
T KOG0334|consen 433 ---------------LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPG 497 (997)
T ss_pred ---------------hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccc
Confidence 01345999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchhcCcc---cCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 294 EVLQHIEDRNV---SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 294 ~L~~~l~~~~~---~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
|+.+++-..+. ++.++.+||+||||+|++++|.+++..|+..++ +++|+++||||+|..+..++.+.+.
T Consensus 498 RmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr--------pdrQtvlfSatfpr~m~~la~~vl~ 569 (997)
T KOG0334|consen 498 RMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR--------PDRQTVLFSATFPRSMEALARKVLK 569 (997)
T ss_pred hhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc--------hhhhhhhhhhhhhHHHHHHHHHhhc
Confidence 99999865443 556666999999999999999999999999986 6999999999999999999999999
Q ss_pred cchhccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhh
Q 014666 371 CLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSL 413 (420)
Q Consensus 371 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l 413 (420)
-|.-+.++....++-.|.|..+++..+ +++--+|.++|..-
T Consensus 570 ~Pveiiv~~~svV~k~V~q~v~V~~~e--~eKf~kL~eLl~e~ 610 (997)
T KOG0334|consen 570 KPVEIIVGGRSVVCKEVTQVVRVCAIE--NEKFLKLLELLGER 610 (997)
T ss_pred CCeeEEEccceeEeccceEEEEEecCc--hHHHHHHHHHHHHH
Confidence 998899998888888899988888766 55555666666543
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.8e-39 Score=327.03 Aligned_cols=210 Identities=29% Similarity=0.395 Sum_probs=189.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHh
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQML 221 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l 221 (420)
+|++|+|++.++++|.++||..||++|.++||.+++|+|+|++||||||||++|++|+++.+.....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~------------- 68 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQP------------- 68 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccc-------------
Confidence 6999999999999999999999999999999999999999999999999999999999996543110
Q ss_pred hhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhc
Q 014666 222 RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~ 301 (420)
.......+++|||+||++||.|++..+..+..+.++++..++||.....+...+..+++||||||++|++++..
T Consensus 69 ------~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~ 142 (456)
T PRK10590 69 ------HAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ 142 (456)
T ss_pred ------ccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc
Confidence 00112346899999999999999999999999999999999999999888888888899999999999999998
Q ss_pred CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 302 ~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
..+.++++++|||||||+|++++|...+..++..++. .+|+++||||++.++..++..++.+|..+.+.
T Consensus 143 ~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~--------~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~ 211 (456)
T PRK10590 143 NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA--------KRQNLLFSATFSDDIKALAEKLLHNPLEIEVA 211 (456)
T ss_pred CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCc--------cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEe
Confidence 8888999999999999999999999999999998873 78999999999999999999999998766443
No 23
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=9.5e-39 Score=334.66 Aligned_cols=218 Identities=26% Similarity=0.392 Sum_probs=193.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
..+|.+|+|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+..
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-------------- 70 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-------------- 70 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh--------------
Confidence 457999999999999999999999999999999999999999999999999999999999984421
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
...++++|||+|||+||.|++..+..+.... ++.+..++||.....+...+..+++||||||++|+++
T Consensus 71 -----------~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~ 139 (629)
T PRK11634 71 -----------ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDH 139 (629)
T ss_pred -----------ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHH
Confidence 1246789999999999999999999987664 7899999999999888888888999999999999999
Q ss_pred hhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 299 l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
+.++.+.++++++|||||||.|++++|...+..|+..++. .+|+++||||+|..+..++..|+.+|..+.+.
T Consensus 140 l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~--------~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~ 211 (629)
T PRK11634 140 LKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE--------GHQTALFSATMPEAIRRITRRFMKEPQEVRIQ 211 (629)
T ss_pred HHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC--------CCeEEEEEccCChhHHHHHHHHcCCCeEEEcc
Confidence 9999999999999999999999999999999999999874 78999999999999999999999998776554
Q ss_pred Ceeeeeeecccc
Q 014666 379 KVTAMLLEMDQA 390 (420)
Q Consensus 379 ~~~~~~~~v~~~ 390 (420)
........+.+.
T Consensus 212 ~~~~~~~~i~q~ 223 (629)
T PRK11634 212 SSVTTRPDISQS 223 (629)
T ss_pred CccccCCceEEE
Confidence 433333344443
No 24
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-38 Score=330.16 Aligned_cols=214 Identities=27% Similarity=0.364 Sum_probs=189.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
.+|++|+|++.++++|.++||..|||||.++||.+++|+|++++||||||||++|++|+++.++....
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~------------ 76 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPA------------ 76 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc------------
Confidence 46999999999999999999999999999999999999999999999999999999999996643210
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchh
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~ 300 (420)
........+++|||+||++||.|++..+..++...++++..++||.....+...+..+++|||+||++|++++.
T Consensus 77 ------~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~ 150 (572)
T PRK04537 77 ------LADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVK 150 (572)
T ss_pred ------ccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence 00112235899999999999999999999999999999999999999988888888889999999999999998
Q ss_pred cC-cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 301 DR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 301 ~~-~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
+. .+.+..+++|||||||+|++++|..++..|+..++.. ..+|+++||||++..+..++..++.+|..+.+.
T Consensus 151 ~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~------~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~ 223 (572)
T PRK04537 151 QHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER------GTRQTLLFSATLSHRVLELAYEHMNEPEKLVVE 223 (572)
T ss_pred hccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccc------cCceEEEEeCCccHHHHHHHHHHhcCCcEEEec
Confidence 75 5678999999999999999999999999999988742 268999999999999999999999988665443
No 25
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.9e-38 Score=324.60 Aligned_cols=206 Identities=27% Similarity=0.396 Sum_probs=189.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
+.+|++|+|++.++++|..+||..|||+|.++||.+++|+|++++||||||||++|++|+++++..
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-------------- 68 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-------------- 68 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh--------------
Confidence 467999999999999999999999999999999999999999999999999999999999985421
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
....+++|||+|||+||.|+...++.++... ++++..++||.+...+...+..+++|+||||++|.++
T Consensus 69 -----------~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~ 137 (460)
T PRK11776 69 -----------KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDH 137 (460)
T ss_pred -----------ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHH
Confidence 1235689999999999999999999988754 7899999999999988888989999999999999999
Q ss_pred hhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 299 l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
+.++.+.++++++|||||||+|++++|...+..++..++. .+|+++||||+++.+..++..++.+|..+.+.
T Consensus 138 l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~--------~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~ 209 (460)
T PRK11776 138 LRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA--------RRQTLLFSATYPEGIAAISQRFQRDPVEVKVE 209 (460)
T ss_pred HHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc--------ccEEEEEEecCcHHHHHHHHHhcCCCEEEEEC
Confidence 9998889999999999999999999999999999999874 78999999999999999999999998776544
No 26
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-39 Score=297.54 Aligned_cols=212 Identities=25% Similarity=0.330 Sum_probs=195.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
..|++++|...++..+.+.||..|+|||.++||.++.|+|+++.|..|+|||.||++|+|+.|.
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid---------------- 148 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKID---------------- 148 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcC----------------
Confidence 4699999999999999999999999999999999999999999999999999999999999542
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchh
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~ 300 (420)
......+++|++||||||.|+.+.|+.+++.+++++...+||++.....-.+....+++||||||+++++.
T Consensus 149 ---------~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~ 219 (459)
T KOG0326|consen 149 ---------PKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAK 219 (459)
T ss_pred ---------ccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHh
Confidence 23456789999999999999999999999999999999999999988888888899999999999999999
Q ss_pred cCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc-----
Q 014666 301 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD----- 375 (420)
Q Consensus 301 ~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~----- 375 (420)
.+.-.++++.+||+||||.||+..|.+-++.++..||. .+|+++||||+|-.+..+..++|++|-.+
T Consensus 220 KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~--------~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e 291 (459)
T KOG0326|consen 220 KGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPK--------ERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE 291 (459)
T ss_pred cccccchhceEEEechhhhhhchhhhhHHHHHHHhCCc--------cceeeEEecccchhHHHHHHHhccCcceeehhhh
Confidence 99889999999999999999999999999999999995 89999999999999999999999999665
Q ss_pred -cCCCeeeeee
Q 014666 376 -NAGKVTAMLL 385 (420)
Q Consensus 376 -~~~~~~~~~~ 385 (420)
..-.+.+++-
T Consensus 292 Ltl~GvtQyYa 302 (459)
T KOG0326|consen 292 LTLKGVTQYYA 302 (459)
T ss_pred hhhcchhhhee
Confidence 2334555553
No 27
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.1e-37 Score=313.53 Aligned_cols=209 Identities=30% Similarity=0.452 Sum_probs=187.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHh
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQML 221 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l 221 (420)
+|++|+|++.++++|..+||..||++|.++||++++|+|++++||||+|||++|++|+++++....
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~-------------- 67 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFP-------------- 67 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--------------
Confidence 699999999999999999999999999999999999999999999999999999999999654210
Q ss_pred hhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhc
Q 014666 222 RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~ 301 (420)
......+++|||+||++||.|++..+..++...++++..++||.....+...+..+++||||||++|++++..
T Consensus 68 -------~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~ 140 (434)
T PRK11192 68 -------RRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE 140 (434)
T ss_pred -------ccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc
Confidence 0122357899999999999999999999999999999999999999888888888899999999999999999
Q ss_pred CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc-hHHHHHHHHhhcchhccCCC
Q 014666 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE-MLGEQLSSLMECLERDNAGK 379 (420)
Q Consensus 302 ~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~-~v~~~~~~~~~~~~~~~~~~ 379 (420)
+.+.+.++++|||||||+|++++|...+..|...++. ..|+++||||++. .+..+...++.+|..+.+..
T Consensus 141 ~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~--------~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~ 211 (434)
T PRK11192 141 ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW--------RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEP 211 (434)
T ss_pred CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc--------ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecC
Confidence 9889999999999999999999999999999887763 6799999999985 58888888888886665443
No 28
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=294.48 Aligned_cols=207 Identities=29% Similarity=0.427 Sum_probs=193.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
...|..+||+..+.+++.+-||..|||||+++||.|++|+|++..|.||||||.||+||+++++...
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~------------- 86 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH------------- 86 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhc-------------
Confidence 3579999999999999999999999999999999999999999999999999999999999955321
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhch
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
...+.+++|+.|||+||.|...+.+.+++++++++.+++||....+|...+..++||||+|||++..+.
T Consensus 87 -----------s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ 155 (529)
T KOG0337|consen 87 -----------SQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLG 155 (529)
T ss_pred -----------cccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeee
Confidence 235778999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
-.-.+.|+.+.|+|+||||++++|||.+++..++..++. ++|+++||||+|..+..+++.=+.+|..+.++
T Consensus 156 vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~--------~~QTllfSatlp~~lv~fakaGl~~p~lVRld 226 (529)
T KOG0337|consen 156 VEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPE--------SRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD 226 (529)
T ss_pred hheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCC--------cceEEEEeccCchhhHHHHHccCCCCceEEee
Confidence 777788999999999999999999999999999999985 77999999999999999999999999777654
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.7e-36 Score=307.30 Aligned_cols=216 Identities=22% Similarity=0.293 Sum_probs=188.4
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhh
Q 014666 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGI 217 (420)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~ 217 (420)
.....|.+++|++.++++|.++||..||+||.++|+.+++|+|+|++|+||||||++|++|+++.+.+....
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~-------- 155 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP-------- 155 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc--------
Confidence 335679999999999999999999999999999999999999999999999999999999999965432110
Q ss_pred HhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhc-CCCcEEEeChhHHH
Q 014666 218 TQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEVL 296 (420)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~L~ 296 (420)
.......+++|||+||++||.|++..+..+....++++..++||.....+.+.+. ..++|||+||++|+
T Consensus 156 ----------~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll 225 (475)
T PRK01297 156 ----------KERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLL 225 (475)
T ss_pred ----------cccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHH
Confidence 0011235799999999999999999999999999999999999988777766654 56899999999999
Q ss_pred hchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhcc
Q 014666 297 QHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376 (420)
Q Consensus 297 ~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~ 376 (420)
+++.++...++++++|||||||.+++++|...+..|+..++.. .+.|+++||||++.++..++..++.+|..+.
T Consensus 226 ~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~ 299 (475)
T PRK01297 226 DFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRK------EERQTLLFSATFTDDVMNLAKQWTTDPAIVE 299 (475)
T ss_pred HHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCC------CCceEEEEEeecCHHHHHHHHHhccCCEEEE
Confidence 9999888899999999999999999999999999999887531 3679999999999999999999999887654
Q ss_pred C
Q 014666 377 A 377 (420)
Q Consensus 377 ~ 377 (420)
+
T Consensus 300 ~ 300 (475)
T PRK01297 300 I 300 (475)
T ss_pred e
Confidence 3
No 30
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-37 Score=275.22 Aligned_cols=241 Identities=22% Similarity=0.311 Sum_probs=220.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
.+.|.+|-|.+.+++++..+||..|+.+|.++||...-|.|++.+|.+|-|||.+|.+..|+.|
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqi---------------- 104 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQI---------------- 104 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhc----------------
Confidence 4569999999999999999999999999999999999999999999999999999999999832
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
+......-+|++|.|||||.||.+....++++. ++++++++||.+.......+.+.|+|+||||||++.+
T Consensus 105 ---------epv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilAL 175 (387)
T KOG0329|consen 105 ---------EPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILAL 175 (387)
T ss_pred ---------CCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHH
Confidence 223445679999999999999999999999886 5899999999999999999999999999999999999
Q ss_pred hhcCcccCCCceEEEecCcchhhcc-CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccC
Q 014666 299 IEDRNVSCDDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 377 (420)
Q Consensus 299 l~~~~~~l~~l~~lVlDEaD~~l~~-~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~ 377 (420)
.+++.+++++++++||||+|.||+. ..+.++..|++..|. ..|+++||||++.+++..+++||.+|..+.+
T Consensus 176 vr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~--------~KQvmmfsatlskeiRpvC~kFmQdPmEi~v 247 (387)
T KOG0329|consen 176 VRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPH--------EKQVMMFSATLSKEIRPVCHKFMQDPMEIFV 247 (387)
T ss_pred HHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcc--------cceeeeeeeecchhhHHHHHhhhcCchhhhc
Confidence 9999999999999999999999876 578999999998875 7899999999999999999999999999999
Q ss_pred CCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhhh
Q 014666 378 GKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHL 415 (420)
Q Consensus 378 ~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~ 415 (420)
+......++.-|.+.+.+-+ .++.+|+..+|++|..
T Consensus 248 DdE~KLtLHGLqQ~YvkLke--~eKNrkl~dLLd~LeF 283 (387)
T KOG0329|consen 248 DDEAKLTLHGLQQYYVKLKE--NEKNRKLNDLLDVLEF 283 (387)
T ss_pred cchhhhhhhhHHHHHHhhhh--hhhhhhhhhhhhhhhh
Confidence 99999999999998877666 6678899999988754
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-36 Score=283.08 Aligned_cols=212 Identities=26% Similarity=0.409 Sum_probs=191.7
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhh
Q 014666 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214 (420)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~ 214 (420)
++.+...+|++++|++.|++.+...||.+|+.||+.||+++..|.|+++++++|+|||.+|++++++.|
T Consensus 20 n~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~i----------- 88 (397)
T KOG0327|consen 20 NWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQI----------- 88 (397)
T ss_pred cHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhc-----------
Confidence 344566799999999999999999999999999999999999999999999999999999999999954
Q ss_pred hhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH-HhcCCCcEEEeChh
Q 014666 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED-VSNAPIGMLIATPS 293 (420)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~-~l~~~~~IlV~TP~ 293 (420)
+......+||+++|||+||.|+......++...++++..+.||.....+.. .....++|+|||||
T Consensus 89 --------------D~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpg 154 (397)
T KOG0327|consen 89 --------------DMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPG 154 (397)
T ss_pred --------------CcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCch
Confidence 123345679999999999999999999999999999999999988874444 44556999999999
Q ss_pred HHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcch
Q 014666 294 EVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373 (420)
Q Consensus 294 ~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~ 373 (420)
|+.+++..+.+....++++|+||||.|+..||.++|..|+.+++. +.|++++|||+|.++..+.++||++|.
T Consensus 155 rV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~--------~vQv~l~SAT~p~~vl~vt~~f~~~pv 226 (397)
T KOG0327|consen 155 RVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS--------DVQVVLLSATMPSDVLEVTKKFMREPV 226 (397)
T ss_pred hHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCc--------chhheeecccCcHHHHHHHHHhccCce
Confidence 999999999888899999999999999999999999999999984 889999999999999999999999998
Q ss_pred hccCCC
Q 014666 374 RDNAGK 379 (420)
Q Consensus 374 ~~~~~~ 379 (420)
.+.+..
T Consensus 227 ~i~vkk 232 (397)
T KOG0327|consen 227 RILVKK 232 (397)
T ss_pred EEEecc
Confidence 875543
No 32
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.4e-35 Score=293.49 Aligned_cols=224 Identities=24% Similarity=0.312 Sum_probs=200.0
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhh
Q 014666 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVG 216 (420)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~ 216 (420)
......|++|.|...++..|+..+|..||+||..|||+++.+.|+|++|..|+|||++|.+.+++.+
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl------------- 87 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESL------------- 87 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhc-------------
Confidence 3446689999999999999999999999999999999999999999999999999999999888732
Q ss_pred hHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhc-cCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH
Q 014666 217 ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH-CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295 (420)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L 295 (420)
......++++||+||||+|.||...+..++. +.|++|.+++||+........++. ++|+|||||||
T Consensus 88 ------------~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi 154 (980)
T KOG4284|consen 88 ------------DSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRI 154 (980)
T ss_pred ------------CcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHH
Confidence 3355678999999999999999999999975 679999999999998776666644 78999999999
Q ss_pred HhchhcCcccCCCceEEEecCcchhhcc-CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchh
Q 014666 296 LQHIEDRNVSCDDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374 (420)
Q Consensus 296 ~~~l~~~~~~l~~l~~lVlDEaD~~l~~-~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~ 374 (420)
..++..+.++.++|+++||||||.+++. .|.++|..|+..||. .+|+++||||.|..+.+++.+||++|..
T Consensus 155 ~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~--------~rQv~a~SATYp~nLdn~Lsk~mrdp~l 226 (980)
T KOG4284|consen 155 AQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQ--------IRQVAAFSATYPRNLDNLLSKFMRDPAL 226 (980)
T ss_pred HHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcch--------hheeeEEeccCchhHHHHHHHHhcccce
Confidence 9999999999999999999999999985 599999999999994 8899999999999999999999999988
Q ss_pred ccCCCeeeeeeecccceEEe
Q 014666 375 DNAGKVTAMLLEMDQAEVFD 394 (420)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~~~ 394 (420)
|....-.-.++-|.|-++..
T Consensus 227 Vr~n~~d~~L~GikQyv~~~ 246 (980)
T KOG4284|consen 227 VRFNADDVQLFGIKQYVVAK 246 (980)
T ss_pred eecccCCceeechhheeeec
Confidence 87766666666666665533
No 33
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.5e-34 Score=288.31 Aligned_cols=205 Identities=25% Similarity=0.406 Sum_probs=185.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
...+|++|+|++.++++|..+||..|+|+|..+|+.+++|+|++++||||||||++|++|+++.+..
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~------------- 92 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY------------- 92 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------------
Confidence 4678999999999999999999999999999999999999999999999999999999999984421
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
...+.++|||+||++||.|+...+..++...++.+..++|+.....+...+..+++|+|+||++|+++
T Consensus 93 ------------~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~ 160 (401)
T PTZ00424 93 ------------DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDM 160 (401)
T ss_pred ------------CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHH
Confidence 12456899999999999999999999998888888888999888777777888899999999999999
Q ss_pred hhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhcc
Q 014666 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376 (420)
Q Consensus 299 l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~ 376 (420)
+.++...++++++|||||||++++.+|...+..++..++ .+.|++++|||+|+.+..+...++.+|..+.
T Consensus 161 l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 230 (401)
T PTZ00424 161 IDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP--------PDVQVALFSATMPNEILELTTKFMRDPKRIL 230 (401)
T ss_pred HHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCC--------CCcEEEEEEecCCHHHHHHHHHHcCCCEEEE
Confidence 998888899999999999999999999999999988876 4789999999999999999999998876543
No 34
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=4e-33 Score=254.47 Aligned_cols=202 Identities=29% Similarity=0.473 Sum_probs=182.7
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhh
Q 014666 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLR 222 (420)
Q Consensus 143 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~ 222 (420)
|+++++++.+.+.|.+.|++.|+++|.++++.+.+|+|+++++|||+|||++|++|+++++....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~--------------- 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP--------------- 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---------------
Confidence 78999999999999999999999999999999999999999999999999999999998554321
Q ss_pred hhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC
Q 014666 223 RDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302 (420)
Q Consensus 223 ~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~ 302 (420)
...++++||++||++|+.|+...++.+....++.+..++|+.........+..+++|+||||+.|.+++.++
T Consensus 66 --------~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~ 137 (203)
T cd00268 66 --------KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG 137 (203)
T ss_pred --------ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC
Confidence 125689999999999999999999999888889999999998887776677778999999999999999888
Q ss_pred cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 303 ~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
...+.+++++|+||+|.+.+.+|...+..++..++. ++|++++|||+++.+..++..++.+|..+
T Consensus 138 ~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~--------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 138 KLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK--------DRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred CCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc--------ccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 888899999999999999988999999999998863 78999999999999999999999987543
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-33 Score=268.44 Aligned_cols=214 Identities=22% Similarity=0.311 Sum_probs=174.1
Q ss_pred ccccccccCCCCHHHH----------HHHHHCCCCCCcHHHHhhHHHHhc---------CCcEEEEccCCCCchhHhHHH
Q 014666 138 EVVSSFQELGLKAEMI----------KAVEKMGLFVPSEIQCVGIPAVLN---------GKSVVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 138 ~~~~~f~~l~l~~~l~----------~~l~~~g~~~pt~iQ~~~i~~i~~---------g~dvl~~a~TGsGKTla~~lp 198 (420)
....-|+.++++.... .++..++++..+|+|..++|.++. ++|+++.||||||||++|.||
T Consensus 124 nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iP 203 (620)
T KOG0350|consen 124 NSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIP 203 (620)
T ss_pred CceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhH
Confidence 3344577777665544 459999999999999999998742 589999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHH
Q 014666 199 LVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE 278 (420)
Q Consensus 199 ~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~ 278 (420)
+++.+.+. .....|||||+||++|+.|++..|..++..+|+.|+.+.|..+.....
T Consensus 204 IVQ~L~~R------------------------~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~ 259 (620)
T KOG0350|consen 204 IVQLLSSR------------------------PVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEA 259 (620)
T ss_pred HHHHHccC------------------------CccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHH
Confidence 99944321 234578999999999999999999999999999999999998887777
Q ss_pred HHhcCC-----CcEEEeChhHHHhchhc-CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcc----------
Q 014666 279 DVSNAP-----IGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALK---------- 342 (420)
Q Consensus 279 ~~l~~~-----~~IlV~TP~~L~~~l~~-~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~---------- 342 (420)
+.+.+. +||||+|||||.+||.+ ..+.|++++||||||||+|++..|..++..++..+......
T Consensus 260 ~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~ 339 (620)
T KOG0350|consen 260 RQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQR 339 (620)
T ss_pred HHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhc
Confidence 766543 38999999999999995 78999999999999999999999999988887766543100
Q ss_pred c----------------CCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 343 S----------------NGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 343 ~----------------~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
. -.+..+.++||||+...-..+..--+..|...
T Consensus 340 ~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~ 388 (620)
T KOG0350|consen 340 QAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLF 388 (620)
T ss_pred ccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceE
Confidence 0 02346789999999888888877778887443
No 36
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=2.3e-32 Score=256.12 Aligned_cols=229 Identities=25% Similarity=0.331 Sum_probs=200.1
Q ss_pred CCCCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhc--CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhh
Q 014666 133 SGSNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEH 210 (420)
Q Consensus 133 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~--g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~ 210 (420)
-+++.-..++|++|+|.++|+++|..+||..|+.||..++|.++. .+|+|.++..|+|||.||.+.+|.++
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrv------- 154 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRV------- 154 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhc-------
Confidence 344556678999999999999999999999999999999999886 48999999999999999999999843
Q ss_pred hhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEe
Q 014666 211 HLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIA 290 (420)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~ 290 (420)
+.....|+++-|+||||||.|+.+++..-++++++...+..-|.....- -.-..+|+||
T Consensus 155 ------------------d~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviG 213 (477)
T KOG0332|consen 155 ------------------DPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIG 213 (477)
T ss_pred ------------------CccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeC
Confidence 3355789999999999999999999999999998888777666522111 1112589999
Q ss_pred ChhHHHhchhc-CcccCCCceEEEecCcchhhcc-CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHH
Q 014666 291 TPSEVLQHIED-RNVSCDDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSL 368 (420)
Q Consensus 291 TP~~L~~~l~~-~~~~l~~l~~lVlDEaD~~l~~-~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~ 368 (420)
|||.+++++.. ..+.+..++++|+||||.|++. ||.++-..|...++. +.|.++||||+...++.++.++
T Consensus 214 TPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~--------~~QllLFSATf~e~V~~Fa~ki 285 (477)
T KOG0332|consen 214 TPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR--------NQQLLLFSATFVEKVAAFALKI 285 (477)
T ss_pred CCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC--------cceEEeeechhHHHHHHHHHHh
Confidence 99999999988 8889999999999999999986 699999999999984 8899999999999999999999
Q ss_pred hhcchhccCCCeeeeeeecccceEEeccc
Q 014666 369 MECLERDNAGKVTAMLLEMDQAEVFDLTE 397 (420)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 397 (420)
+.|++.+.+-+.+..+..|-|-++.|..+
T Consensus 286 vpn~n~i~Lk~eel~L~~IkQlyv~C~~~ 314 (477)
T KOG0332|consen 286 VPNANVIILKREELALDNIKQLYVLCACR 314 (477)
T ss_pred cCCCceeeeehhhccccchhhheeeccch
Confidence 99999998888888888888888877665
No 37
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=1.2e-30 Score=278.62 Aligned_cols=197 Identities=20% Similarity=0.301 Sum_probs=162.1
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcc
Q 014666 147 GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEA 226 (420)
Q Consensus 147 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~ 226 (420)
.|++.+.++|.++||..||++|.++||.+++|+|++++||||||||++|++|+++.+.+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~--------------------- 78 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD--------------------- 78 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh---------------------
Confidence 38999999999999999999999999999999999999999999999999999995532
Q ss_pred cCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC----
Q 014666 227 LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR---- 302 (420)
Q Consensus 227 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~---- 302 (420)
..++++|||+|||+||.|++..+..++ ..++++..+.|+... .+...+..+++|||+||++|...+...
T Consensus 79 -----~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~ 151 (742)
T TIGR03817 79 -----DPRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARW 151 (742)
T ss_pred -----CCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHH
Confidence 135689999999999999999999987 457888877777664 444566777999999999987543221
Q ss_pred cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchh
Q 014666 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374 (420)
Q Consensus 303 ~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~ 374 (420)
...++++++|||||||.|.+ .|+.++..+++.|..... ..+.++|+++||||+++... ++..++.++..
T Consensus 152 ~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~-~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~ 220 (742)
T TIGR03817 152 ARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCA-RYGASPVFVLASATTADPAA-AASRLIGAPVV 220 (742)
T ss_pred HHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHH-hcCCCCEEEEEecCCCCHHH-HHHHHcCCCeE
Confidence 22378999999999999976 489999999888865432 12457899999999998755 67777777644
No 38
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.2e-31 Score=265.02 Aligned_cols=248 Identities=23% Similarity=0.322 Sum_probs=208.9
Q ss_pred ccccccccc----CCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhh
Q 014666 137 AEVVSSFQE----LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHL 212 (420)
Q Consensus 137 ~~~~~~f~~----l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~ 212 (420)
+.++.+|.+ ..++..|++++...||..|||+|..++|.++.++|++.|||||||||++|++|++++|....-
T Consensus 128 ~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~---- 203 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ---- 203 (593)
T ss_pred CCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc----
Confidence 566788887 579999999999999999999999999999999999999999999999999999996643210
Q ss_pred hhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh--ccCCCceecccCCCCh-HHHHHHhcCCCcEEE
Q 014666 213 QLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS--HCARLDSSMENGGVSS-KALEDVSNAPIGMLI 289 (420)
Q Consensus 213 ~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~--~~~~i~~~~~~gg~~~-~~~~~~l~~~~~IlV 289 (420)
.....+.+++|+.|||+||.|++..+..+. ..++++...+...... ..........++|+|
T Consensus 204 ----------------~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili 267 (593)
T KOG0344|consen 204 ----------------EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILI 267 (593)
T ss_pred ----------------ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHh
Confidence 123467899999999999999999999998 6666666665544322 222222334479999
Q ss_pred eChhHHHhchhcCc--ccCCCceEEEecCcchhhcc-CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHH
Q 014666 290 ATPSEVLQHIEDRN--VSCDDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366 (420)
Q Consensus 290 ~TP~~L~~~l~~~~--~~l~~l~~lVlDEaD~~l~~-~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~ 366 (420)
+||-++..++..+. ++++.|.|+|+||||++++. .|..++..|+..+.. ++..+-+||||++..+.+++.
T Consensus 268 ~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-------~~i~~a~FSat~~~~VEE~~~ 340 (593)
T KOG0344|consen 268 STPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-------PDIRVALFSATISVYVEEWAE 340 (593)
T ss_pred cCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcC-------cchhhhhhhccccHHHHHHHH
Confidence 99999999999876 78999999999999999999 899999999999875 688999999999999999999
Q ss_pred HHhhcchhccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhhhc
Q 014666 367 SLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLS 416 (420)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~~ 416 (420)
..+.++..+.+|.-....-.|.|..+||..+. -|+..+.+.+...
T Consensus 341 ~i~~~~~~vivg~~~sa~~~V~QelvF~gse~-----~K~lA~rq~v~~g 385 (593)
T KOG0344|consen 341 LIKSDLKRVIVGLRNSANETVDQELVFCGSEK-----GKLLALRQLVASG 385 (593)
T ss_pred HhhccceeEEEecchhHhhhhhhhheeeecch-----hHHHHHHHHHhcc
Confidence 99999999999999999999999999999883 3455555555544
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=4.6e-29 Score=268.34 Aligned_cols=181 Identities=21% Similarity=0.268 Sum_probs=157.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHH-HhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
.|++|+||+.++++|.+.||..|+|+|.++++. +..|+|++++||||||||++|.+|+++.+.
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~---------------- 65 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA---------------- 65 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh----------------
Confidence 589999999999999999999999999999997 789999999999999999999999998441
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchh
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~ 300 (420)
.+.++|||+||++||.|++..+..+.. .++++..++|+...... ....++|+||||+++..+++
T Consensus 66 ------------~~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr 129 (737)
T PRK02362 66 ------------RGGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLR 129 (737)
T ss_pred ------------cCCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHh
Confidence 245799999999999999999998764 48899999888754332 22457999999999999988
Q ss_pred cCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 301 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 301 ~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
++...+.++++|||||+|.+.+.+++..++.++..+.... .+.|+|++|||+++
T Consensus 130 ~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~-----~~~qii~lSATl~n 183 (737)
T PRK02362 130 NGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN-----PDLQVVALSATIGN 183 (737)
T ss_pred cChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC-----CCCcEEEEcccCCC
Confidence 7666789999999999999999899999999988876432 46899999999986
No 40
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.96 E-value=3.7e-28 Score=214.69 Aligned_cols=167 Identities=27% Similarity=0.451 Sum_probs=144.2
Q ss_pred cHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcH
Q 014666 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTE 244 (420)
Q Consensus 165 t~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~Ptr 244 (420)
||+|.++|+.+.+|+|+++.||||+|||++|++|+++.+.+. ...++||++|++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~--------------------------~~~~~lii~P~~ 54 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG--------------------------KDARVLIIVPTR 54 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT--------------------------SSSEEEEEESSH
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC--------------------------CCceEEEEeecc
Confidence 799999999999999999999999999999999999854321 234799999999
Q ss_pred HHHHHHHHHHHHhhccCCCceecccCCCChH-HHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhcc
Q 014666 245 ESADQGFHMAKFISHCARLDSSMENGGVSSK-ALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 323 (420)
Q Consensus 245 eLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~-~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~ 323 (420)
+|+.|++..+..+....++++..++|+.... .....+..+++|+|+||++|.+++..+...+.++++|||||+|.+.+.
T Consensus 55 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 55 ALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE 134 (169)
T ss_dssp HHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc
Confidence 9999999999999988889999999998865 444555667999999999999999986667788999999999999988
Q ss_pred CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 324 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 324 ~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
+++..+..|+..+... .+.|++++|||+++.+++
T Consensus 135 ~~~~~~~~i~~~~~~~------~~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 135 TFRAMLKSILRRLKRF------KNIQIILLSATLPSNVEK 168 (169)
T ss_dssp THHHHHHHHHHHSHTT------TTSEEEEEESSSTHHHHH
T ss_pred cHHHHHHHHHHHhcCC------CCCcEEEEeeCCChhHhh
Confidence 8899999999988642 268999999999977665
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=99.96 E-value=7.7e-28 Score=258.30 Aligned_cols=188 Identities=20% Similarity=0.228 Sum_probs=161.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHH-HhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
.|.++++++.+.+.|.+.||..|+|+|.++|+. ++.|+|++++||||||||++|.+|+++++..
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------------- 66 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------------- 66 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------------
Confidence 588999999999999999999999999999995 8899999999999999999999999985421
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchh
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~ 300 (420)
.+.++|||+||++||.|++..+..+.. .++++..++|+...... +...++|+|+||+++..++.
T Consensus 67 ------------~~~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~ 130 (720)
T PRK00254 67 ------------EGGKAVYLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLR 130 (720)
T ss_pred ------------cCCeEEEEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHh
Confidence 245899999999999999999988653 58899999988765422 23458999999999999888
Q ss_pred cCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 301 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 301 ~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
++...++++++||+||+|.+.+.+++..++.++..+. .++|+|++|||+++ ...++. |+.
T Consensus 131 ~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~--------~~~qiI~lSATl~n-~~~la~-wl~ 190 (720)
T PRK00254 131 HGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHML--------GRAQILGLSATVGN-AEELAE-WLN 190 (720)
T ss_pred CCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC--------cCCcEEEEEccCCC-HHHHHH-HhC
Confidence 7766789999999999999998899999999999876 36899999999986 355554 443
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=2.4e-27 Score=250.00 Aligned_cols=183 Identities=18% Similarity=0.136 Sum_probs=147.4
Q ss_pred CCCCCCcHHHHhhHHHHhcCC-cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGK-SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~-dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.||. |||||.++||.++.|+ ++++++|||||||.+|+++++.. ......+++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--------------------------~~~~~~~~r 64 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--------------------------EIGAKVPRR 64 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--------------------------cccccccce
Confidence 5998 9999999999999998 68888999999999877665531 011245666
Q ss_pred EE-EcCcHHHHHHHHHHHHHhhccC-----------------------CCceecccCCCChHHHHHHhcCCCcEEEeChh
Q 014666 238 IV-LCTTEESADQGFHMAKFISHCA-----------------------RLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293 (420)
Q Consensus 238 Li-l~PtreLa~Qi~~~~~~l~~~~-----------------------~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 293 (420)
|| ++|||+||.|++..++.+++.. ++++.+++||.....|...+..+++|||||+
T Consensus 65 Lv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~- 143 (844)
T TIGR02621 65 LVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV- 143 (844)
T ss_pred EEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH-
Confidence 66 6699999999999999998754 4888999999999999999999999999995
Q ss_pred HHHhchhcCcc----------------cCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 294 EVLQHIEDRNV----------------SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 294 ~L~~~l~~~~~----------------~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
+++.++.+ .++++++||||||| ++++|.+.+..|+..+... ....++|+++||||+
T Consensus 144 ---D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp---~~~rprQtLLFSAT~ 215 (844)
T TIGR02621 144 ---DMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRP---PDFLPLRVVELTATS 215 (844)
T ss_pred ---HHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccC---cccccceEEEEecCC
Confidence 55555544 27889999999999 7899999999999975210 001247999999999
Q ss_pred cchHHHHHHHHhhcchhccC
Q 014666 358 AEMLGEQLSSLMECLERDNA 377 (420)
Q Consensus 358 ~~~v~~~~~~~~~~~~~~~~ 377 (420)
+.++..++..++.++..+.+
T Consensus 216 p~ei~~l~~~~~~~p~~i~V 235 (844)
T TIGR02621 216 RTDGPDRTTLLSAEDYKHPV 235 (844)
T ss_pred CccHHHHHHHHccCCceeec
Confidence 99999988888877654433
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.95 E-value=2.8e-27 Score=257.35 Aligned_cols=188 Identities=21% Similarity=0.276 Sum_probs=153.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhccc
Q 014666 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEAL 227 (420)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~ 227 (420)
+++.+.+.+.. +|..|||+|.++||.+++|+|++++||||||||++|++|+++.+.....
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~------------------- 77 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGR------------------- 77 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcc-------------------
Confidence 56777777665 7999999999999999999999999999999999999999996643110
Q ss_pred CCCCCCCCeEEEEcCcHHHHHHHHHHHHH-------hh----ccC-CCceecccCCCChHHHHHHhcCCCcEEEeChhHH
Q 014666 228 LPMKPMHPRAIVLCTTEESADQGFHMAKF-------IS----HCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295 (420)
Q Consensus 228 ~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-------l~----~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L 295 (420)
......++++|||+|||+||.|++..+.. ++ ... ++++.+.+|+.........+...++||||||++|
T Consensus 78 ~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L 157 (876)
T PRK13767 78 EGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESL 157 (876)
T ss_pred ccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHH
Confidence 00113467899999999999999876552 22 222 6788899999988887778888899999999999
Q ss_pred HhchhcCcc--cCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 296 LQHIEDRNV--SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 296 ~~~l~~~~~--~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
..++.+..+ .+.++++|||||+|.|++..++.++..++..|.... +..+|+|++|||+++
T Consensus 158 ~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~----~~~~q~IglSATl~~ 219 (876)
T PRK13767 158 AILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA----GGEFVRIGLSATIEP 219 (876)
T ss_pred HHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc----CCCCeEEEEecccCC
Confidence 888866543 578999999999999998888988888888776543 247899999999986
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=99.94 E-value=1.7e-26 Score=246.66 Aligned_cols=186 Identities=15% Similarity=0.215 Sum_probs=157.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHh
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQML 221 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l 221 (420)
.|++|+|++.+++.+...||. ++++|.++++.+..|+|++++||||||||++|.++++..+.
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~----------------- 63 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL----------------- 63 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH-----------------
Confidence 588999999999999999997 99999999999999999999999999999999999988432
Q ss_pred hhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhc
Q 014666 222 RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~ 301 (420)
.+.++|+|+|+++||.|+++.+..+. ..++++...+|+...... . ...++|+|+||+++..++.+
T Consensus 64 -----------~~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~--~-~~~~dIiv~Tpek~~~l~~~ 128 (674)
T PRK01172 64 -----------AGLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD--F-IKRYDVVILTSEKADSLIHH 128 (674)
T ss_pred -----------hCCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh--h-hccCCEEEECHHHHHHHHhC
Confidence 23579999999999999999998764 357888888887654322 1 24579999999999988887
Q ss_pred CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHH
Q 014666 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366 (420)
Q Consensus 302 ~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~ 366 (420)
+...+.++++|||||||.+.+.+++..++.++..+.... .+.|+|++|||+++ ...+..
T Consensus 129 ~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~-----~~~riI~lSATl~n-~~~la~ 187 (674)
T PRK01172 129 DPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN-----PDARILALSATVSN-ANELAQ 187 (674)
T ss_pred ChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC-----cCCcEEEEeCccCC-HHHHHH
Confidence 777789999999999999998889999999887765432 47899999999986 344544
No 45
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=5.2e-26 Score=251.14 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=149.0
Q ss_pred HHHHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCC
Q 014666 153 IKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK 231 (420)
Q Consensus 153 ~~~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 231 (420)
.+.+.+ .|+ .||++|..++|.++.|+|++++||||||||+ |+++++..+.
T Consensus 70 ~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~--------------------------- 120 (1176)
T PRK09401 70 EKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA--------------------------- 120 (1176)
T ss_pred HHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH---------------------------
Confidence 334434 477 8999999999999999999999999999995 6666654221
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCCh-----HHHHHHhc-CCCcEEEeChhHHHhchhcCccc
Q 014666 232 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS-----KALEDVSN-APIGMLIATPSEVLQHIEDRNVS 305 (420)
Q Consensus 232 ~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~-----~~~~~~l~-~~~~IlV~TP~~L~~~l~~~~~~ 305 (420)
..++++|||+|||+||.|++..++.++...++.+..++|+... ..+...+. ..++|+||||++|.+++. .+.
T Consensus 121 ~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~ 198 (1176)
T PRK09401 121 KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELP 198 (1176)
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hcc
Confidence 1367899999999999999999999999888888888776542 22223334 458999999999999886 455
Q ss_pred CCCceEEEecCcchhhc-----------cCCH-HHHHHHHHHchhhh----------------cccCCCCceEEEEeecc
Q 014666 306 CDDIRYVVLDEADTLFD-----------RGFG-PEISKILNPLKDSA----------------LKSNGQGFQTILVTAAI 357 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~-----------~~~~-~~l~~Il~~l~~~~----------------~~~~~~~~Q~v~~SATl 357 (420)
..++++|||||||+|++ +||. +++..++..++... ....+...|+++||||+
T Consensus 199 ~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~ 278 (1176)
T PRK09401 199 KKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATG 278 (1176)
T ss_pred ccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCC
Confidence 67799999999999996 7885 78888888776310 00011268999999999
Q ss_pred cch-HHHHHHHHhhcchhccCCCeeeeeeecccce
Q 014666 358 AEM-LGEQLSSLMECLERDNAGKVTAMLLEMDQAE 391 (420)
Q Consensus 358 ~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 391 (420)
++. +.. .+++++..+.++......-+|.+.+
T Consensus 279 ~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~y 310 (1176)
T PRK09401 279 RPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSY 310 (1176)
T ss_pred CccchHH---HHhhccceEEecCcccccCCceEEE
Confidence 875 432 2334443444444443344444443
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.93 E-value=1.4e-25 Score=235.47 Aligned_cols=197 Identities=19% Similarity=0.252 Sum_probs=169.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhccc
Q 014666 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEAL 227 (420)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~ 227 (420)
|++.+.+.+.+. |+.|||.|.+|||.|.+|+|+|+.||||||||+|..+|+++.|.+..
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-------------------- 66 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-------------------- 66 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc--------------------
Confidence 789999999988 99999999999999999999999999999999999999999664421
Q ss_pred CCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcc--c
Q 014666 228 LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV--S 305 (420)
Q Consensus 228 ~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~--~ 305 (420)
.+....+..+|+|+|-|+|.+.+...+...+...|+.+..-+|+++..+..++..+.|||||+||+.|.-++....+ .
T Consensus 67 ~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~ 146 (814)
T COG1201 67 KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFREL 146 (814)
T ss_pred CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHH
Confidence 01123467899999999999999999999999999999999999999988899999999999999999888876433 5
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
|.+++|+||||+|.+.+...+.++.--+..|.... .++|.|++|||+.+ ...+++.+...
T Consensus 147 l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~-----~~~qRIGLSATV~~-~~~varfL~g~ 206 (814)
T COG1201 147 LRDVRYVIVDEIHALAESKRGVQLALSLERLRELA-----GDFQRIGLSATVGP-PEEVAKFLVGF 206 (814)
T ss_pred hcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC-----cccEEEeehhccCC-HHHHHHHhcCC
Confidence 89999999999999998889999998888887654 28999999999984 34444433333
No 47
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=2.4e-24 Score=238.25 Aligned_cols=208 Identities=17% Similarity=0.161 Sum_probs=147.0
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCC
Q 014666 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLP 229 (420)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 229 (420)
..+.+.+.......||++|+.++|.++.|+|++++||||||||+ |++|++..+.
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~------------------------- 118 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLA------------------------- 118 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHH-------------------------
Confidence 34555565544457999999999999999999999999999997 7777765321
Q ss_pred CCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCcee---cccCCCChHHHHH---Hhc-CCCcEEEeChhHHHhchhcC
Q 014666 230 MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSS---MENGGVSSKALED---VSN-APIGMLIATPSEVLQHIEDR 302 (420)
Q Consensus 230 ~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~---~~~gg~~~~~~~~---~l~-~~~~IlV~TP~~L~~~l~~~ 302 (420)
..++++|||+|||+||.|++..+..++...++.+. +++||.+...+.. .+. .+++||||||++|.+++..-
T Consensus 119 --~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l 196 (1171)
T TIGR01054 119 --KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL 196 (1171)
T ss_pred --hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh
Confidence 13578999999999999999999999988776654 4678887765432 233 45999999999999887642
Q ss_pred cccCCCceEEEecCcchhhc-----------cCCHHH-HHHHHHHchhhh--------------cccCCCCce--EEEEe
Q 014666 303 NVSCDDIRYVVLDEADTLFD-----------RGFGPE-ISKILNPLKDSA--------------LKSNGQGFQ--TILVT 354 (420)
Q Consensus 303 ~~~l~~l~~lVlDEaD~~l~-----------~~~~~~-l~~Il~~l~~~~--------------~~~~~~~~Q--~v~~S 354 (420)
.. +++++||||||+|++ +||.++ +..|+..++... ........| +++||
T Consensus 197 --~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~S 273 (1171)
T TIGR01054 197 --GP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSS 273 (1171)
T ss_pred --cC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEe
Confidence 12 899999999999998 788875 666654332100 000012334 67799
Q ss_pred ec-ccchHHHHHHHHhhcchhccCCCeeeeeeecccce
Q 014666 355 AA-IAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAE 391 (420)
Q Consensus 355 AT-l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 391 (420)
|| +|..+.. .+++++..+.++.....+.++.+.+
T Consensus 274 AT~~p~~~~~---~l~r~ll~~~v~~~~~~~r~I~~~~ 308 (1171)
T TIGR01054 274 ATGRPRGKRA---KLFRELLGFEVGGGSDTLRNVVDVY 308 (1171)
T ss_pred CCCCccccHH---HHcccccceEecCccccccceEEEE
Confidence 99 5655442 3455665566665554445555543
No 48
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.92 E-value=1.4e-25 Score=213.91 Aligned_cols=144 Identities=22% Similarity=0.307 Sum_probs=126.8
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhhccC---CCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 232 PMHPRAIVLCTTEESADQGFHMAKFISHCA---RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 232 ~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~---~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
++.|++||+-|+||||.|.++.++.|-..+ .++..++.||.....|...+..+.+|+|||||||.+.+..+.+.+..
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 567899999999999999999777765443 56777899999999999999999999999999999999999999999
Q ss_pred ceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc-hHHHHHHHHhhcchhccC
Q 014666 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE-MLGEQLSSLMECLERDNA 377 (420)
Q Consensus 309 l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~-~v~~~~~~~~~~~~~~~~ 377 (420)
+++||+||||.+|..++-+-|.++...++... +++..+|.+++|||+.. ++..+..+.|..|.-+..
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~t--sdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdL 431 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMT--SDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDL 431 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhh--cCCcccccceeeeEEeEEEeeehhhhhccCceeEec
Confidence 99999999999999999999999999888755 44567999999999975 788888999999866643
No 49
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.4e-24 Score=222.46 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=132.4
Q ss_pred HCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++. .+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~-------------------------------~~~~~ 54 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC-------------------------------SDGIT 54 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH-------------------------------cCCcE
Confidence 47999999999999999999999999999999999999999986 24569
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchh-cCcc-cCCCceE
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIE-DRNV-SCDDIRY 311 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~-~~~~-~l~~l~~ 311 (420)
|||+||++|+.|.+..+..+ ++.+..+.++.....+... ....++|+++||+++..... ...+ ...++.+
T Consensus 55 lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 55 LVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred EEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 99999999999988877654 6777777777665533322 23458999999999865431 1122 5688999
Q ss_pred EEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHh
Q 014666 312 VVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369 (420)
Q Consensus 312 lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~ 369 (420)
|||||||+++++| |.+.+..+...... . ++.|+++||||+++.+...+...+
T Consensus 131 iViDEaH~i~~~g~~fr~~~~~l~~l~~~-~-----~~~~~l~lTAT~~~~~~~di~~~l 184 (470)
T TIGR00614 131 IAVDEAHCISQWGHDFRPDYKALGSLKQK-F-----PNVPIMALTATASPSVREDILRQL 184 (470)
T ss_pred EEEeCCcccCccccccHHHHHHHHHHHHH-c-----CCCceEEEecCCCHHHHHHHHHHc
Confidence 9999999999887 66666554322211 1 368999999999998876655554
No 50
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.92 E-value=3.2e-24 Score=229.77 Aligned_cols=188 Identities=17% Similarity=0.206 Sum_probs=142.6
Q ss_pred cccc--CCCCHHHHHHHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 142 SFQE--LGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 142 ~f~~--l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
.|.. |+....+...+.. +||..++|+|.++|++++.|+|+++++|||+|||++|++|++.
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~----------------- 498 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI----------------- 498 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH-----------------
Confidence 4553 5566677776665 7999999999999999999999999999999999999999986
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhc------CCCcEEEeCh
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN------APIGMLIATP 292 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~------~~~~IlV~TP 292 (420)
....+|||+|+++|+.+....+.. .++....+.|+.....+...+. ..++|||+||
T Consensus 499 --------------~~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 499 --------------CPGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred --------------cCCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 234699999999999854333333 3788889999988776655443 4589999999
Q ss_pred hHHHhc--hhcC--cc-cCCCceEEEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHH
Q 014666 293 SEVLQH--IEDR--NV-SCDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 365 (420)
Q Consensus 293 ~~L~~~--l~~~--~~-~l~~l~~lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~ 365 (420)
++|... +.+. .+ ....+.+|||||||+|+++| |++.+..+-..... . ++.|+++||||++..+...+
T Consensus 561 ERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~-f-----p~vPilALTATAT~~V~eDI 634 (1195)
T PLN03137 561 EKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK-F-----PNIPVLALTATATASVKEDV 634 (1195)
T ss_pred HHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh-C-----CCCCeEEEEecCCHHHHHHH
Confidence 998632 2221 11 23458999999999999998 77777654211111 1 36899999999999988766
Q ss_pred HHHhh
Q 014666 366 SSLME 370 (420)
Q Consensus 366 ~~~~~ 370 (420)
...+.
T Consensus 635 ~~~L~ 639 (1195)
T PLN03137 635 VQALG 639 (1195)
T ss_pred HHHcC
Confidence 65554
No 51
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=4.2e-24 Score=240.86 Aligned_cols=209 Identities=15% Similarity=0.130 Sum_probs=148.6
Q ss_pred HHHHHHHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccC
Q 014666 150 AEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALL 228 (420)
Q Consensus 150 ~~l~~~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (420)
..+.+.+.+ +|| .||++|+.+||.+++|+|++++||||||||++++++++..
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~-------------------------- 118 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL-------------------------- 118 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH--------------------------
Confidence 345556665 899 6999999999999999999999999999999666665541
Q ss_pred CCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCC--CceecccCCCChHHHHHH---hcC-CCcEEEeChhHHHhchhcC
Q 014666 229 PMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDV---SNA-PIGMLIATPSEVLQHIEDR 302 (420)
Q Consensus 229 ~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~--i~~~~~~gg~~~~~~~~~---l~~-~~~IlV~TP~~L~~~l~~~ 302 (420)
...+.++|||+||++||.|++..+..++...+ +++..++|+.+...+... +.. .++|||+||++|.+++...
T Consensus 119 --~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l 196 (1638)
T PRK14701 119 --ALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM 196 (1638)
T ss_pred --HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH
Confidence 01356899999999999999999999987654 567778899887665432 333 4999999999999887642
Q ss_pred cccCCCceEEEecCcchhhc-----------cCCHHHHHH-HHHHchh------------------hhcccCCCCce-EE
Q 014666 303 NVSCDDIRYVVLDEADTLFD-----------RGFGPEISK-ILNPLKD------------------SALKSNGQGFQ-TI 351 (420)
Q Consensus 303 ~~~l~~l~~lVlDEaD~~l~-----------~~~~~~l~~-Il~~l~~------------------~~~~~~~~~~Q-~v 351 (420)
. ..++++|||||||+|++ +||.+++.. ++..++. ... .-....| ++
T Consensus 197 -~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ll 273 (1638)
T PRK14701 197 -K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIE-KIGNKIGCLI 273 (1638)
T ss_pred -h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhh-hcCCCccEEE
Confidence 2 26799999999999986 589888874 2222110 000 0012345 67
Q ss_pred EEeecccchHHHHHHHHhhcchhccCCCeeeeeeecccceE
Q 014666 352 LVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEV 392 (420)
Q Consensus 352 ~~SATl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 392 (420)
++|||+++... ...+++++..+.++......-++.|.++
T Consensus 274 ~~SAT~~~r~~--~~~l~~~~l~f~v~~~~~~lr~i~~~yi 312 (1638)
T PRK14701 274 VASATGKAKGD--RVKLYRELLGFEVGSGRSALRNIVDVYL 312 (1638)
T ss_pred EEecCCCchhH--HHHHhhcCeEEEecCCCCCCCCcEEEEE
Confidence 89999996311 2234566655656655444445554443
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.90 E-value=3e-23 Score=224.40 Aligned_cols=184 Identities=16% Similarity=0.117 Sum_probs=140.2
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHhhHHHHhcC------CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 147 GLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 147 ~l~~~l~~~l-~~~g~~~pt~iQ~~~i~~i~~g------~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
..+..+...+ ..++|. ||++|..||+.+.++ +|++++|+||||||.+|++|++..+.
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~--------------- 498 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--------------- 498 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH---------------
Confidence 3445555555 447994 999999999999875 79999999999999999999987431
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH---hcC-CCcEEEeChhHH
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV---SNA-PIGMLIATPSEV 295 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IlV~TP~~L 295 (420)
.+.+++||+||++||.|++..+..+....++++..++|+.....+... +.. .++||||||..+
T Consensus 499 -------------~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll 565 (926)
T TIGR00580 499 -------------DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL 565 (926)
T ss_pred -------------hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh
Confidence 346899999999999999999999888788899888888765443332 333 589999999532
Q ss_pred HhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 296 ~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
.+.+.+.++++|||||+|++ +......+..++ .++|+++||||+.+....+....+.++..+
T Consensus 566 -----~~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~--------~~~~vL~~SATpiprtl~~~l~g~~d~s~I 627 (926)
T TIGR00580 566 -----QKDVKFKDLGLLIIDEEQRF-----GVKQKEKLKELR--------TSVDVLTLSATPIPRTLHMSMSGIRDLSII 627 (926)
T ss_pred -----hCCCCcccCCEEEeeccccc-----chhHHHHHHhcC--------CCCCEEEEecCCCHHHHHHHHhcCCCcEEE
Confidence 24567899999999999985 223344454443 378999999998777666655555666554
Q ss_pred cC
Q 014666 376 NA 377 (420)
Q Consensus 376 ~~ 377 (420)
..
T Consensus 628 ~~ 629 (926)
T TIGR00580 628 AT 629 (926)
T ss_pred ec
Confidence 33
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.90 E-value=5e-23 Score=227.17 Aligned_cols=182 Identities=17% Similarity=0.127 Sum_probs=145.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhHHHHhcC------CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhh
Q 014666 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRR 223 (420)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g------~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~ 223 (420)
....+....++| .||++|..+|+.++.+ +|++++|+||+|||.+|+.++...+
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~-------------------- 646 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-------------------- 646 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH--------------------
Confidence 455666788899 6999999999999987 8999999999999999998887622
Q ss_pred hcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhc----CCCcEEEeChhHHHhch
Q 014666 224 DEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHI 299 (420)
Q Consensus 224 ~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~L~~~l 299 (420)
..+.+++||+||++||.|++..+.......++++.+++|+.+...+...+. ..++||||||+.+.
T Consensus 647 --------~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~--- 715 (1147)
T PRK10689 647 --------ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ--- 715 (1147)
T ss_pred --------HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh---
Confidence 136789999999999999999999877666888888888888776655442 46899999997542
Q ss_pred hcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
..+.+.++++|||||+|+| |+. + ...+..++ .++|+++||||+.+....++...++++..+...
T Consensus 716 --~~v~~~~L~lLVIDEahrf---G~~-~-~e~lk~l~--------~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~ 779 (1147)
T PRK10689 716 --SDVKWKDLGLLIVDEEHRF---GVR-H-KERIKAMR--------ADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 (1147)
T ss_pred --CCCCHhhCCEEEEechhhc---chh-H-HHHHHhcC--------CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecC
Confidence 3456789999999999997 332 2 33444444 478999999999888888888888888766443
No 54
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.90 E-value=8.9e-23 Score=219.40 Aligned_cols=194 Identities=20% Similarity=0.256 Sum_probs=158.8
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhccc
Q 014666 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEAL 227 (420)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~ 227 (420)
....+..+|...|...++++|..|+..+.+|+|+|++++||||||.+|++|+++.+++.
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~--------------------- 113 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD--------------------- 113 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC---------------------
Confidence 34456888888899999999999999999999999999999999999999999966442
Q ss_pred CCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCC--CceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC---
Q 014666 228 LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--- 302 (420)
Q Consensus 228 ~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~--i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~--- 302 (420)
..-+||+|.||++||+.....++.+....+ +.+....|.....+......+.|+||++||..|..++.+.
T Consensus 114 -----~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~ 188 (851)
T COG1205 114 -----PSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDA 188 (851)
T ss_pred -----cCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcch
Confidence 222799999999999999999999887776 7788888888877776788899999999999998865543
Q ss_pred -cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 303 -NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 303 -~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
.+.+.+++|||+||+|.+- .-|+.++-.+++.|.....- -+.++|+|+.|||+.+.... +..+..
T Consensus 189 ~~~~~~~Lk~lVvDElHtYr-Gv~GS~vA~llRRL~~~~~~-~~~~~q~i~~SAT~~np~e~-~~~l~~ 254 (851)
T COG1205 189 WLWLLRNLKYLVVDELHTYR-GVQGSEVALLLRRLLRRLRR-YGSPLQIICTSATLANPGEF-AEELFG 254 (851)
T ss_pred HHHHHhcCcEEEEecceecc-ccchhHHHHHHHHHHHHHhc-cCCCceEEEEeccccChHHH-HHHhcC
Confidence 3457889999999999882 34899999999888765532 23579999999999875443 344443
No 55
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.90 E-value=9.1e-23 Score=214.76 Aligned_cols=182 Identities=16% Similarity=0.202 Sum_probs=135.9
Q ss_pred CCCHHHHHHHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhc
Q 014666 147 GLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDE 225 (420)
Q Consensus 147 ~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~ 225 (420)
.+.......|+. +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~------------------------ 63 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV------------------------ 63 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH------------------------
Confidence 334444455554 7999999999999999999999999999999999999999986
Q ss_pred ccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhc
Q 014666 226 ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIED 301 (420)
Q Consensus 226 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~ 301 (420)
....+|||+|+++|+.|....+..+ ++.+.++.++......... .....+|+++||++|....-.
T Consensus 64 -------~~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~ 132 (607)
T PRK11057 64 -------LDGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL 132 (607)
T ss_pred -------cCCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH
Confidence 2346999999999999988877764 6777777777665543322 234578999999998743222
Q ss_pred CcccCCCceEEEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHh
Q 014666 302 RNVSCDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369 (420)
Q Consensus 302 ~~~~l~~l~~lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~ 369 (420)
..+...++.+|||||||++.++| |.+.+..+-..... -++.|++++|||+++.+...+...+
T Consensus 133 ~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~------~p~~~~v~lTAT~~~~~~~di~~~l 196 (607)
T PRK11057 133 EHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR------FPTLPFMALTATADDTTRQDIVRLL 196 (607)
T ss_pred HHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh------CCCCcEEEEecCCChhHHHHHHHHh
Confidence 23445679999999999999887 66665544322111 1368999999999988766544443
No 56
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.90 E-value=8.4e-23 Score=215.16 Aligned_cols=175 Identities=19% Similarity=0.260 Sum_probs=138.4
Q ss_pred HHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCC
Q 014666 155 AVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM 233 (420)
Q Consensus 155 ~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (420)
.|.+ +||..++|+|.++|+.++.|+|+++++|||+|||++|++|++. .
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~-------------------------------~ 52 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL-------------------------------L 52 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH-------------------------------c
Confidence 4444 7999999999999999999999999999999999999999985 2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
...+|||+|+++|+.|.+..+..+ ++.+..+.++......... ....++|+++||++|........+...++
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l 128 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPI 128 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCC
Confidence 345899999999999988877764 6778888887776554332 23568999999999875443344556789
Q ss_pred eEEEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 310 RYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 310 ~~lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
.+|||||||++.++| |.+.+..+....... ++.+++++|||.+..+...+..++.
T Consensus 129 ~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~------~~~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 129 ALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF------PQVPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred CEEEEeCCcccccccCccHHHHHHHHHHHHhC------CCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 999999999999876 777766665443321 2456999999999988876666664
No 57
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=3.1e-23 Score=218.18 Aligned_cols=149 Identities=13% Similarity=0.220 Sum_probs=131.7
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhh
Q 014666 144 QELGLKAEMIKAVE-----KMGLFVP---SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLV 215 (420)
Q Consensus 144 ~~l~l~~~l~~~l~-----~~g~~~p---t~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~ 215 (420)
..|++...+.+.+. .+||..| ||+|.+++|.+..++|++++++||+|||++|++|++..++.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----------
Confidence 45788999998887 6899998 99999999999999999999999999999999999974321
Q ss_pred hhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH
Q 014666 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295 (420)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L 295 (420)
+..++||+||++||.|+...+..+.+++++++++++||.+...+...+ +|+|+|||||+|
T Consensus 135 ------------------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRL 194 (970)
T PRK12899 135 ------------------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEF 194 (970)
T ss_pred ------------------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChh
Confidence 123899999999999999999999999999999999999998876655 599999999999
Q ss_pred -HhchhcCcccCC-------CceEEEecCcchhhc
Q 014666 296 -LQHIEDRNVSCD-------DIRYVVLDEADTLFD 322 (420)
Q Consensus 296 -~~~l~~~~~~l~-------~l~~lVlDEaD~~l~ 322 (420)
.++++.+.+.++ .+.++||||||.||-
T Consensus 195 gfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 195 GFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 999998866665 458999999999973
No 58
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.88 E-value=9e-22 Score=209.52 Aligned_cols=164 Identities=17% Similarity=0.192 Sum_probs=129.2
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHHhcC------CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcc
Q 014666 153 IKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEA 226 (420)
Q Consensus 153 ~~~l~~~g~~~pt~iQ~~~i~~i~~g------~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~ 226 (420)
......++| .||++|..+|+.|..+ +|++++|+||||||++|++|++..+.
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---------------------- 308 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---------------------- 308 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----------------------
Confidence 344566788 5999999999999887 48999999999999999999998431
Q ss_pred cCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH---HhcC-CCcEEEeChhHHHhchhcC
Q 014666 227 LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSNA-PIGMLIATPSEVLQHIEDR 302 (420)
Q Consensus 227 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~IlV~TP~~L~~~l~~~ 302 (420)
.+.+++|++||++||.|++..++.+....++++.+++|+........ .+.. .++||||||+++.+
T Consensus 309 ------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----- 377 (681)
T PRK10917 309 ------AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----- 377 (681)
T ss_pred ------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----
Confidence 36789999999999999999999999888999999999988644332 3334 59999999998754
Q ss_pred cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 303 ~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
.+.+.+++++||||+|++. ......+... +..+++++||||..+....
T Consensus 378 ~v~~~~l~lvVIDE~Hrfg-----~~qr~~l~~~--------~~~~~iL~~SATp~prtl~ 425 (681)
T PRK10917 378 DVEFHNLGLVIIDEQHRFG-----VEQRLALREK--------GENPHVLVMTATPIPRTLA 425 (681)
T ss_pred cchhcccceEEEechhhhh-----HHHHHHHHhc--------CCCCCEEEEeCCCCHHHHH
Confidence 3457899999999999863 1222233222 1368999999998665443
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.88 E-value=5.3e-22 Score=210.76 Aligned_cols=191 Identities=17% Similarity=0.238 Sum_probs=156.8
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHHH-HhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhh
Q 014666 146 LGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRD 224 (420)
Q Consensus 146 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~ 224 (420)
+.+++.+...+...|+...++-|+.++.. +..+.|+|+|+|||||||+..++.+++.+.+
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~------------------- 74 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE------------------- 74 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh-------------------
Confidence 44788999999999998888888888775 5567999999999999999999999995543
Q ss_pred cccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcc
Q 014666 225 EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV 304 (420)
Q Consensus 225 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~ 304 (420)
.+.++|+|||+|+||.+++..+..+ ...|+++...+|+...... . -.+++|||+||+++-.++++...
T Consensus 75 --------~~~k~vYivPlkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~--~-l~~~~ViVtT~EK~Dsl~R~~~~ 142 (766)
T COG1204 75 --------GGGKVVYIVPLKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE--R-LARYDVIVTTPEKLDSLTRKRPS 142 (766)
T ss_pred --------cCCcEEEEeChHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh--h-hccCCEEEEchHHhhHhhhcCcc
Confidence 2467999999999999999999944 4559999999999876542 1 24589999999999888888777
Q ss_pred cCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcch
Q 014666 305 SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373 (420)
Q Consensus 305 ~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~ 373 (420)
.+..+++|||||+|.+.|...++-++.|+..++... ..+|++++|||+|+- .+++.++-.++.
T Consensus 143 ~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~-----~~~rivgLSATlpN~-~evA~wL~a~~~ 205 (766)
T COG1204 143 WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN-----ELIRIVGLSATLPNA-EEVADWLNAKLV 205 (766)
T ss_pred hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC-----cceEEEEEeeecCCH-HHHHHHhCCccc
Confidence 788999999999998888778999999999887644 358999999999973 444444444443
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.88 E-value=1.1e-21 Score=207.50 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=131.1
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhHHHHhcC------CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhh
Q 014666 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRR 223 (420)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g------~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~ 223 (420)
..+.+.+..++| .||++|..+|+.|..+ ++.+++|+||||||++|++|++..+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------------------- 282 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------------------- 282 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-------------------
Confidence 345567788999 6999999999999876 36899999999999999999998431
Q ss_pred hcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH---Hhc-CCCcEEEeChhHHHhch
Q 014666 224 DEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSN-APIGMLIATPSEVLQHI 299 (420)
Q Consensus 224 ~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~---~l~-~~~~IlV~TP~~L~~~l 299 (420)
.+.+++|++||++||.|++..+..+....++++++++|+........ .+. ..++||||||+.+.+
T Consensus 283 ---------~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-- 351 (630)
T TIGR00643 283 ---------AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-- 351 (630)
T ss_pred ---------cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc--
Confidence 35689999999999999999999998888999999999987654322 233 458999999998764
Q ss_pred hcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
.+.+.++.++||||+|++.. .+...++..... ...+|+++||||+.+...
T Consensus 352 ---~~~~~~l~lvVIDEaH~fg~----~qr~~l~~~~~~------~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 352 ---KVEFKRLALVIIDEQHRFGV----EQRKKLREKGQG------GFTPHVLVMSATPIPRTL 401 (630)
T ss_pred ---cccccccceEEEechhhccH----HHHHHHHHhccc------CCCCCEEEEeCCCCcHHH
Confidence 34578999999999998632 222223332211 025799999999766443
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.87 E-value=1.2e-21 Score=217.68 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=127.8
Q ss_pred EEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh----
Q 014666 183 LSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS---- 258 (420)
Q Consensus 183 ~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~---- 258 (420)
++||||||||++|.||+|+.++...... ........+.++|||+|+++|+.|+++.++...
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~---------------~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~ 65 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGED---------------TREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIA 65 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhccccc---------------ccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhh
Confidence 5799999999999999999664321000 000011246799999999999999999887521
Q ss_pred --------ccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC-cccCCCceEEEecCcchhhccCCHHHH
Q 014666 259 --------HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEI 329 (420)
Q Consensus 259 --------~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~-~~~l~~l~~lVlDEaD~~l~~~~~~~l 329 (420)
...++++...+|+.+...+.+.+++.++|||+||++|..+|.++ ...+++|++|||||+|.|++..++.++
T Consensus 66 ~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~L 145 (1490)
T PRK09751 66 DERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHL 145 (1490)
T ss_pred hhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHH
Confidence 13478899999999998887788888999999999999988654 346899999999999999987778888
Q ss_pred HHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHh
Q 014666 330 SKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369 (420)
Q Consensus 330 ~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~ 369 (420)
..++..|.... +.++|+|+||||+++ ..+++ .|+
T Consensus 146 el~LeRL~~l~----~~~~QrIgLSATI~n-~eevA-~~L 179 (1490)
T PRK09751 146 ALSLERLDALL----HTSAQRIGLSATVRS-ASDVA-AFL 179 (1490)
T ss_pred HHHHHHHHHhC----CCCCeEEEEEeeCCC-HHHHH-HHh
Confidence 77777776542 247899999999987 45554 454
No 62
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=1.6e-21 Score=203.25 Aligned_cols=191 Identities=14% Similarity=0.152 Sum_probs=149.3
Q ss_pred HHHCCCCCCcHHHHhhHHHHh-cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCC
Q 014666 156 VEKMGLFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH 234 (420)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~i~-~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (420)
...++|..+..+|..++|.+. ..-|.|+|||||||||-.|+|.+|+.|.+. ..........
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~------------------~~~~~i~k~~ 164 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEH------------------EEQGDIAKDD 164 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhh------------------ccccccccCC
Confidence 345688999999999999876 567999999999999999999999966441 1112223456
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcc----cCCCce
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV----SCDDIR 310 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~----~l~~l~ 310 (420)
.++|+|+|+++||..++..+..-....|++|..++|++...... . ..++|||+||++ ||.+.++.. .++.++
T Consensus 165 fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEK-wDvvTRk~~~d~~l~~~V~ 240 (1230)
T KOG0952|consen 165 FKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEK-WDVVTRKSVGDSALFSLVR 240 (1230)
T ss_pred ceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH-H--HhcCEEEecccc-eeeeeeeeccchhhhhhee
Confidence 78999999999999999988877777899999999998776544 2 348999999999 788876432 357799
Q ss_pred EEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc
Q 014666 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 311 ~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
+|||||+|.+ ....++.++.|+.++..+.. ...+.+++|++|||+|+ ..+++..+-.|
T Consensus 241 LviIDEVHlL-hd~RGpvlEtiVaRtlr~ve-ssqs~IRivgLSATlPN-~eDvA~fL~vn 298 (1230)
T KOG0952|consen 241 LVIIDEVHLL-HDDRGPVLETIVARTLRLVE-SSQSMIRIVGLSATLPN-YEDVARFLRVN 298 (1230)
T ss_pred eEEeeeehhh-cCcccchHHHHHHHHHHHHH-hhhhheEEEEeeccCCC-HHHHHHHhcCC
Confidence 9999999955 56689999999988764332 33467999999999997 34444434344
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.86 E-value=1.5e-21 Score=192.47 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=173.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHH-HhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
....++|.||+.+.+.|...|++.+.|+|..++.. ++.|.|+++.++|+||||+.--++-+..++.
T Consensus 193 r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~------------- 259 (830)
T COG1202 193 RVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS------------- 259 (830)
T ss_pred cccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------------
Confidence 34688999999999999999999999999999996 8899999999999999999988777764322
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH----HhcCCCcEEEeChhH
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED----VSNAPIGMLIATPSE 294 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~----~l~~~~~IlV~TP~~ 294 (420)
.+.+.|+|+|-.+||+|-|..|+.-...+++++.+-+|......... .-....||||||.+.
T Consensus 260 --------------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEG 325 (830)
T COG1202 260 --------------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEG 325 (830)
T ss_pred --------------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechh
Confidence 46679999999999999999998877888999888887655433221 112357999999999
Q ss_pred HHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc---
Q 014666 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC--- 371 (420)
Q Consensus 295 L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~--- 371 (420)
+-.+|+.+ -.+.++..+||||+|.+-|...++.+.-++..|.... ++.|+|.+|||+.+. .++++.+-.+
T Consensus 326 iD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~-----~~AQ~i~LSATVgNp-~elA~~l~a~lV~ 398 (830)
T COG1202 326 IDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF-----PGAQFIYLSATVGNP-EELAKKLGAKLVL 398 (830)
T ss_pred HHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC-----CCCeEEEEEeecCCh-HHHHHHhCCeeEe
Confidence 88888776 5689999999999998877778888999988888766 478999999999754 3444544444
Q ss_pred chhccCCCeeeeeeecccc
Q 014666 372 LERDNAGKVTAMLLEMDQA 390 (420)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~~ 390 (420)
++...++...|.+++-+..
T Consensus 399 y~~RPVplErHlvf~~~e~ 417 (830)
T COG1202 399 YDERPVPLERHLVFARNES 417 (830)
T ss_pred ecCCCCChhHeeeeecCch
Confidence 4455666666666665443
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.86 E-value=3.7e-21 Score=201.81 Aligned_cols=174 Identities=16% Similarity=0.117 Sum_probs=127.4
Q ss_pred cHHHHhhHHHHhcCCcEEEEccCCCCchhH---------hHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCC
Q 014666 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLA---------YLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235 (420)
Q Consensus 165 t~iQ~~~i~~i~~g~dvl~~a~TGsGKTla---------~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (420)
..+|.++++.+++|+|+|++|+||||||.+ |++|.+..+.+. .....+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~----------------------~~~~~~~ 223 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKI----------------------DPNFIER 223 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhc----------------------ccccCCc
Confidence 348999999999999999999999999997 555555522110 0012356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhcc---CCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEE
Q 014666 236 RAIVLCTTEESADQGFHMAKFISHC---ARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~~~~~l~~~---~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 312 (420)
+++|++|||+||.|+...+.....+ .+..+.+.+||... .+........+|||+|++.. ...++++++|
T Consensus 224 ~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~V 295 (675)
T PHA02653 224 PIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTV 295 (675)
T ss_pred EEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEE
Confidence 8999999999999999888765544 46677888999873 22222334679999998631 1247889999
Q ss_pred EecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 313 VlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
||||||.+..++ +.+..++..+.. ..+|+++||||++.++..+ ..++.+|..+.+.
T Consensus 296 VIDEaHEr~~~~--DllL~llk~~~~-------~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~ 351 (675)
T PHA02653 296 IIDEVHEHDQIG--DIIIAVARKHID-------KIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP 351 (675)
T ss_pred EccccccCccch--hHHHHHHHHhhh-------hcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC
Confidence 999999997665 445555544321 2359999999999988776 6899888776543
No 65
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=7e-20 Score=164.46 Aligned_cols=187 Identities=29% Similarity=0.391 Sum_probs=149.9
Q ss_pred HCCCCCCcHHHHhhHHHHhcC-CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCe
Q 014666 158 KMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPR 236 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g-~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 236 (420)
..++..++++|..++..+..+ +.++++++||+|||.+++.+++..+.. ....+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~--------------------------~~~~~ 56 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR--------------------------GKGKR 56 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc--------------------------cCCCc
Confidence 356788999999999999998 999999999999999999999884321 11356
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCC-cEEEeChhHHHhchhcCcccCCCceEEEec
Q 014666 237 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPI-GMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315 (420)
Q Consensus 237 ~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~-~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 315 (420)
+||++||+.++.|+...+..+............++.........+..+. +|+++|++.+.+.+.........++++|||
T Consensus 57 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiD 136 (201)
T smart00487 57 VLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILD 136 (201)
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEE
Confidence 9999999999999999998877654433444445554344444455555 999999999999998877677889999999
Q ss_pred CcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 316 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 316 EaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
|+|.+....+...+..++..++ ...+++++|||+++.+......++.+...+..+
T Consensus 137 E~h~~~~~~~~~~~~~~~~~~~--------~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 137 EAHRLLDGGFGDQLEKLLKLLP--------KNVQLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CHHHHhcCCcHHHHHHHHHhCC--------ccceEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 9999876578888888988774 378999999999999999999888866555444
No 66
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.83 E-value=1.3e-19 Score=194.40 Aligned_cols=163 Identities=17% Similarity=0.188 Sum_probs=122.6
Q ss_pred HHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHH
Q 014666 167 IQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEES 246 (420)
Q Consensus 167 iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreL 246 (420)
+-...+..+..++++|++|+||||||++|.+++++.+ ..+.++||+.|||++
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~----------------------------~~~~~ilvlqPrR~a 57 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP----------------------------GIGGKIIMLEPRRLA 57 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh----------------------------ccCCeEEEEeCcHHH
Confidence 3345566777899999999999999999999999722 124579999999999
Q ss_pred HHHHHHHHH-HhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcc-hhhccC
Q 014666 247 ADQGFHMAK-FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD-TLFDRG 324 (420)
Q Consensus 247 a~Qi~~~~~-~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD-~~l~~~ 324 (420)
|.|++..+. .++...|..++..+++.. ......+|+|+|||+|++++.+. ..++++++|||||+| ++++.+
T Consensus 58 A~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~D 130 (819)
T TIGR01970 58 ARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDAD 130 (819)
T ss_pred HHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccc
Confidence 999998774 444455556655554432 23445799999999999999864 568999999999999 588877
Q ss_pred CHHHH-HHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 325 FGPEI-SKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 325 ~~~~l-~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
+.-.+ ..+...++ .+.|+|+||||++... +..|+.++..+
T Consensus 131 l~L~ll~~i~~~lr--------~dlqlIlmSATl~~~~---l~~~l~~~~vI 171 (819)
T TIGR01970 131 LGLALALDVQSSLR--------EDLKILAMSATLDGER---LSSLLPDAPVV 171 (819)
T ss_pred hHHHHHHHHHHhcC--------CCceEEEEeCCCCHHH---HHHHcCCCcEE
Confidence 65433 34544454 4789999999999754 46677665444
No 67
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.82 E-value=2.1e-19 Score=193.06 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=120.4
Q ss_pred HHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHH
Q 014666 168 QCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESA 247 (420)
Q Consensus 168 Q~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa 247 (420)
-...+..+.++++++++|+||||||++|.+++++.. ....++||+.|||++|
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~----------------------------~~~~~ilvlqPrR~aA 61 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHG----------------------------GINGKIIMLEPRRLAA 61 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcC----------------------------CcCCeEEEECChHHHH
Confidence 344566777899999999999999999999998721 1234799999999999
Q ss_pred HHHHHHHH-HhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcch-hhccCC
Q 014666 248 DQGFHMAK-FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT-LFDRGF 325 (420)
Q Consensus 248 ~Qi~~~~~-~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~-~l~~~~ 325 (420)
.|++..+. .++...|..++..+++... .....+|+|+|||+|++++..+ ..++++++|||||+|. +++.++
T Consensus 62 ~qia~rva~~l~~~~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl 134 (812)
T PRK11664 62 RNVAQRLAEQLGEKPGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADL 134 (812)
T ss_pred HHHHHHHHHHhCcccCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccch
Confidence 99998874 4555567777776665532 2234689999999999998864 4689999999999996 565543
Q ss_pred H-HHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 326 G-PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 326 ~-~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
. ..+..++..++ .+.|+|+||||++.+. +..|+.++..+
T Consensus 135 ~L~ll~~i~~~lr--------~~lqlilmSATl~~~~---l~~~~~~~~~I 174 (812)
T PRK11664 135 ALALLLDVQQGLR--------DDLKLLIMSATLDNDR---LQQLLPDAPVI 174 (812)
T ss_pred HHHHHHHHHHhCC--------ccceEEEEecCCCHHH---HHHhcCCCCEE
Confidence 2 22344555444 4789999999998652 45677655444
No 68
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.80 E-value=5.1e-19 Score=182.60 Aligned_cols=150 Identities=13% Similarity=0.131 Sum_probs=115.2
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
..|+++|..+++.++.+++.++++|||+|||++++..+.. +. .....++|||+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~-~~--------------------------~~~~~~vLilv 165 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRY-YL--------------------------ENYEGKVLIIV 165 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH-HH--------------------------hcCCCeEEEEE
Confidence 4799999999999999999999999999999976543211 10 01234799999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhh
Q 014666 242 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l 321 (420)
||++|+.|+...+..+.......+..+.||.... .+.+|+|+||+++.+... ..+.++++||+||||++.
T Consensus 166 pt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~ 235 (501)
T PHA02558 166 PTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFT 235 (501)
T ss_pred CcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhccc
Confidence 9999999999999988765555555566665432 347899999999976543 246789999999999997
Q ss_pred ccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 322 ~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
. ..+..++..++. ..|+++||||+...
T Consensus 236 ~----~~~~~il~~~~~--------~~~~lGLTATp~~~ 262 (501)
T PHA02558 236 G----KSLTSIITKLDN--------CKFKFGLTGSLRDG 262 (501)
T ss_pred c----hhHHHHHHhhhc--------cceEEEEeccCCCc
Confidence 4 346677776653 56899999999753
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.80 E-value=3.1e-18 Score=169.38 Aligned_cols=163 Identities=13% Similarity=0.140 Sum_probs=114.7
Q ss_pred HHHhhHHHHhcCCc--EEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcH
Q 014666 167 IQCVGIPAVLNGKS--VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTE 244 (420)
Q Consensus 167 iQ~~~i~~i~~g~d--vl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~Ptr 244 (420)
+|.++++.+.++.+ ++++||||||||++|++|++. ...++++++|++
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~-------------------------------~~~~~~~~~P~~ 49 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH-------------------------------GENDTIALYPTN 49 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH-------------------------------cCCCEEEEeChH
Confidence 49999999998875 789999999999999999986 234589999999
Q ss_pred HHHHHHHHHHHHhhcc----CCCceecccCCCChH--H------------------HHHHhcCCCcEEEeChhHHHhchh
Q 014666 245 ESADQGFHMAKFISHC----ARLDSSMENGGVSSK--A------------------LEDVSNAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 245 eLa~Qi~~~~~~l~~~----~~i~~~~~~gg~~~~--~------------------~~~~l~~~~~IlV~TP~~L~~~l~ 300 (420)
+|+.|+++.+..+... .++.+..+.|....+ . ........++|+++||+.|..++.
T Consensus 50 aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr 129 (357)
T TIGR03158 50 ALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTR 129 (357)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHh
Confidence 9999999988887632 244555555532111 0 001123468999999998876654
Q ss_pred cCc-----c---cCCCceEEEecCcchhhccCC-----HHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHH
Q 014666 301 DRN-----V---SCDDIRYVVLDEADTLFDRGF-----GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSS 367 (420)
Q Consensus 301 ~~~-----~---~l~~l~~lVlDEaD~~l~~~~-----~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~ 367 (420)
... . .+.+++++||||+|.+-..+. .-....++.... ...+++++|||+++.+...+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~i~lSAT~~~~~~~~l~~ 201 (357)
T TIGR03158 130 FAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE--------CRRKFVFLSATPDPALILRLQN 201 (357)
T ss_pred hhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhh--------cCCcEEEEecCCCHHHHHHHHh
Confidence 321 1 257899999999998753331 112233333322 2479999999999988877776
Q ss_pred H
Q 014666 368 L 368 (420)
Q Consensus 368 ~ 368 (420)
.
T Consensus 202 ~ 202 (357)
T TIGR03158 202 A 202 (357)
T ss_pred c
Confidence 4
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.78 E-value=6.8e-18 Score=165.49 Aligned_cols=213 Identities=15% Similarity=0.175 Sum_probs=162.8
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
-.+..+|......++.+ |.+++.|||-|||+..++.+..++.. .+.++|+|+
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~---------------------------~~~kvlfLA 65 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW---------------------------FGGKVLFLA 65 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh---------------------------cCCeEEEec
Confidence 35677788777766665 99999999999999999888874421 222799999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhh
Q 014666 242 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l 321 (420)
||+-|+.|-...|..+.....-.++.+.|.....+....|.. ..|+|+||..+.+-|..+.+++.++.+|||||||+-.
T Consensus 66 PTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAv 144 (542)
T COG1111 66 PTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAV 144 (542)
T ss_pred CCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhcc
Confidence 999999999999999988777788999999998877777766 5899999999999999999999999999999999985
Q ss_pred ccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc-------cCCCeeeeeeecccceE-E
Q 014666 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD-------NAGKVTAMLLEMDQAEV-F 393 (420)
Q Consensus 322 ~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~-~ 393 (420)
.. ...+.-.-..+.. ..++.++++|||...+...+ ...|.|+.+- ....+..++..+.-.++ +
T Consensus 145 Gn--yAYv~Va~~y~~~------~k~~~ilgLTASPGs~~ekI-~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV 215 (542)
T COG1111 145 GN--YAYVFVAKEYLRS------AKNPLILGLTASPGSDLEKI-QEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKV 215 (542)
T ss_pred Cc--chHHHHHHHHHHh------ccCceEEEEecCCCCCHHHH-HHHHHhCCcceEEEecCCCccHHHhhccceeEEEec
Confidence 33 2222222222222 14789999999999887665 5677776442 23456666666666666 5
Q ss_pred eccccHHHHHHHHHHHHhh
Q 014666 394 DLTESQDALKKKVVEAMDS 412 (420)
Q Consensus 394 ~~~~~~~~~~~k~~~~~~~ 412 (420)
.+.+..++++..+..+++.
T Consensus 216 ~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 216 DLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred cCcHHHHHHHHHHHHHHHH
Confidence 5667777777777777664
No 71
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.78 E-value=1.1e-18 Score=173.21 Aligned_cols=155 Identities=18% Similarity=0.185 Sum_probs=107.1
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhc
Q 014666 180 SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~ 259 (420)
|++++||||||||++|++|++..+. ...+.+++|++|+++|+.|++..+..+..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~--------------------------~~~~~~ii~v~P~~~L~~q~~~~l~~~f~ 54 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIK--------------------------SQKADRVIIALPTRATINAMYRRAKELFG 54 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHh--------------------------hCCCCeEEEEeehHHHHHHHHHHHHHHhC
Confidence 6899999999999999999997431 12356899999999999999999888632
Q ss_pred cCCCceecccCCCCh------------HHHHHHh-c-----CCCcEEEeChhHHHhchhcCc----ccCC--CceEEEec
Q 014666 260 CARLDSSMENGGVSS------------KALEDVS-N-----APIGMLIATPSEVLQHIEDRN----VSCD--DIRYVVLD 315 (420)
Q Consensus 260 ~~~i~~~~~~gg~~~------------~~~~~~l-~-----~~~~IlV~TP~~L~~~l~~~~----~~l~--~l~~lVlD 315 (420)
. .+..++|+... ....... . -..+|+|+||+.+...+.... ..+. ..++||||
T Consensus 55 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViD 131 (358)
T TIGR01587 55 S---NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFD 131 (358)
T ss_pred c---ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEe
Confidence 1 22222322211 0000000 1 135799999999988776521 1111 23799999
Q ss_pred CcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc
Q 014666 316 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 316 EaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
|||.|++.++. .+..++..+.. .+.|+++||||+|+.+..++..+...
T Consensus 132 E~h~~~~~~~~-~l~~~l~~l~~-------~~~~~i~~SATlp~~l~~~~~~~~~~ 179 (358)
T TIGR01587 132 EVHFYDEYTLA-LILAVLEVLKD-------NDVPILLMSATLPKFLKEYAEKIGYV 179 (358)
T ss_pred CCCCCCHHHHH-HHHHHHHHHHH-------cCCCEEEEecCchHHHHHHHhcCCCc
Confidence 99999876543 37777776653 36899999999998877777665544
No 72
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=1.7e-18 Score=180.53 Aligned_cols=130 Identities=18% Similarity=0.295 Sum_probs=112.1
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHH-HHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l-~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
+|+ .|+++|..+.+.+..|+ |++++||+|||++|++|++ +.+ .+.++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL-----------------------------~G~~V 100 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNAL-----------------------------TGKGV 100 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHH-----------------------------hCCCE
Confidence 576 79999999999998887 9999999999999999995 421 24469
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcC------cccCCCce
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIR 310 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~ 310 (420)
+|++||++||.|.+..+..+..++|+++++++||......... ..++|+||||++| .++++.+ .+.+..+.
T Consensus 101 ~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~ 178 (745)
T TIGR00963 101 HVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFH 178 (745)
T ss_pred EEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccc
Confidence 9999999999999999999999999999999999887654433 3589999999999 8888766 34678899
Q ss_pred EEEecCcchhhc
Q 014666 311 YVVLDEADTLFD 322 (420)
Q Consensus 311 ~lVlDEaD~~l~ 322 (420)
++||||+|.|+-
T Consensus 179 ~aIIDEaDs~LI 190 (745)
T TIGR00963 179 FAIIDEVDSILI 190 (745)
T ss_pred eeEeecHHHHhH
Confidence 999999999873
No 73
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=5.5e-18 Score=165.94 Aligned_cols=228 Identities=13% Similarity=0.098 Sum_probs=166.9
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccC-CCCc--hhHhHHHHHHHhhhhhhhhhhhhhhhHhH---hhhhcccCCCCCCCC
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGS-GSGR--TLAYLLPLVQVYSQLDEEHHLQLVGITQM---LRRDEALLPMKPMHP 235 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~T-GsGK--Tla~~lp~l~~i~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~ 235 (420)
..+|+.|.+.+....+++|+++.-.| +.|+ +-.||+.+|++|++.+.....+....... ...+....+..-.+|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 47899999999999999999987776 4565 66899999999998876544443332111 112223344456789
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCC---------ceecccCC----------------------CChH--------H
Q 014666 236 RAIVLCTTEESADQGFHMAKFISHCARL---------DSSMENGG----------------------VSSK--------A 276 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~~~~~l~~~~~i---------~~~~~~gg----------------------~~~~--------~ 276 (420)
++|||||+|+.|..+.+.+..+...... +.---++| .... .
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999999888443221 11111121 1100 0
Q ss_pred HHHHh---cCCCcEEEeChhHHHhchhcC------cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCC
Q 014666 277 LEDVS---NAPIGMLIATPSEVLQHIEDR------NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQG 347 (420)
Q Consensus 277 ~~~~l---~~~~~IlV~TP~~L~~~l~~~------~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~ 347 (420)
..-.| -...|||||+|..|..+|.+. ...|++|.++|||.||.|+ ++.|+++..|+.+|+.++.+.++.+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccCCC
Confidence 00001 124589999999999999742 2347899999999999998 7889999999999999998877765
Q ss_pred ----------------ceEEEEeecccchHHHHHHHHhhcchh-------ccCCCeeeeeeecccc
Q 014666 348 ----------------FQTILVTAAIAEMLGEQLSSLMECLER-------DNAGKVTAMLLEMDQA 390 (420)
Q Consensus 348 ----------------~Q~v~~SATl~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~ 390 (420)
+|+++||+-..+.+..++..+|+|... +..|++.++.+.+.|.
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qv 519 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQV 519 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhh
Confidence 899999999999999999999998633 2445777777777775
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.75 E-value=3e-17 Score=178.53 Aligned_cols=174 Identities=16% Similarity=0.139 Sum_probs=131.2
Q ss_pred CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 161 ~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
.-.|.++|..++..++.+ |+++++|||+|||+++++++.+.+. ..+.++|||
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~---------------------------~~~~~vLvl 64 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH---------------------------KKGGKVLIL 64 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH---------------------------hCCCeEEEE
Confidence 347899999999888877 9999999999999999999887431 134579999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchh
Q 014666 241 CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 241 ~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~ 320 (420)
+||++|+.|....++.+....+.++..+.|+........ +..+++|+|+||+.+...+..+.+.+.++++|||||||++
T Consensus 65 ~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~-~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~ 143 (773)
T PRK13766 65 APTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAE-LWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRA 143 (773)
T ss_pred eCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHH-HHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccc
Confidence 999999999999998876554557777788776654433 3345799999999998888778888899999999999998
Q ss_pred hccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcc
Q 014666 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372 (420)
Q Consensus 321 l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~ 372 (420)
........+...+.... ..+++++||||..... ..+...|.++
T Consensus 144 ~~~~~~~~i~~~~~~~~--------~~~~il~lTaTP~~~~-~~i~~~~~~L 186 (773)
T PRK13766 144 VGNYAYVYIAERYHEDA--------KNPLVLGLTASPGSDE-EKIKEVCENL 186 (773)
T ss_pred cccccHHHHHHHHHhcC--------CCCEEEEEEcCCCCCH-HHHHHHHHhC
Confidence 75443333333322221 3578999999976543 3344555554
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=5.5e-18 Score=179.26 Aligned_cols=131 Identities=16% Similarity=0.284 Sum_probs=110.6
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|+ .|+++|..+++.+..|+ |+++.||+|||++|++|++... ..++.++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~a----------------------------l~G~~v~ 123 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNA----------------------------LEGKGVH 123 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHH----------------------------HcCCCeE
Confidence 577 89999999999999887 9999999999999999998521 1467899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcC------cccCCCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~ 311 (420)
|++||++||.|.+..+..+..++|+++++++||.....+.+. ..+++|++|||++| .++|... ...+..+.+
T Consensus 124 VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~ 202 (790)
T PRK09200 124 LITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNY 202 (790)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccce
Confidence 999999999999999999999999999999999884333333 35699999999999 5555432 235688999
Q ss_pred EEecCcchhh
Q 014666 312 VVLDEADTLF 321 (420)
Q Consensus 312 lVlDEaD~~l 321 (420)
+||||||.||
T Consensus 203 ~IvDEaDsiL 212 (790)
T PRK09200 203 AIIDEIDSIL 212 (790)
T ss_pred EEEeccccce
Confidence 9999999986
No 76
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.74 E-value=5.7e-17 Score=172.38 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=116.7
Q ss_pred CCcHHHHhhHHHHhc---CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEE
Q 014666 163 VPSEIQCVGIPAVLN---GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~---g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Li 239 (420)
.+|+.|+.++..+.+ ++++++.|+||||||.+|+.++...+. .+.++||
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----------------------------~g~~vLv 195 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA----------------------------QGKQALV 195 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH----------------------------cCCeEEE
Confidence 589999999999887 488999999999999999988776321 2567999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhcCcccCCCceEEEec
Q 014666 240 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315 (420)
Q Consensus 240 l~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 315 (420)
|+||++|+.|++..++.. .+..+..++|+.+....... ....++||||||+.+. ..+.++.+||||
T Consensus 196 LvPt~~L~~Q~~~~l~~~---fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvD 265 (679)
T PRK05580 196 LVPEIALTPQMLARFRAR---FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVD 265 (679)
T ss_pred EeCcHHHHHHHHHHHHHH---hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEE
Confidence 999999999999988764 36788889998876554433 2345899999999874 347889999999
Q ss_pred CcchhhccC---CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHH
Q 014666 316 EADTLFDRG---FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 316 EaD~~l~~~---~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
|+|.....+ ..-+...+...... ..+.|+|++|||.+.+....
T Consensus 266 Eeh~~s~~~~~~p~y~~r~va~~ra~------~~~~~~il~SATps~~s~~~ 311 (679)
T PRK05580 266 EEHDSSYKQQEGPRYHARDLAVVRAK------LENIPVVLGSATPSLESLAN 311 (679)
T ss_pred CCCccccccCcCCCCcHHHHHHHHhh------ccCCCEEEEcCCCCHHHHHH
Confidence 999664322 11122222211111 13789999999987555443
No 77
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.2e-17 Score=173.10 Aligned_cols=130 Identities=19% Similarity=0.260 Sum_probs=109.2
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|. .||++|..++|.++.|+ |+++.||+|||++|++|++... ..+++++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~a----------------------------l~G~~v~ 148 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAA----------------------------LAGLPVH 148 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHh----------------------------hcCCeEE
Confidence 566 79999999999999999 9999999999999999999732 2467899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcCc--------------
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN-------------- 303 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~~-------------- 303 (420)
||+||++||.|.+..+..+..+.|+++++++||.... .+....+++|+|||...| .++|....
T Consensus 149 VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~ 226 (656)
T PRK12898 149 VITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALE 226 (656)
T ss_pred EEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhh
Confidence 9999999999999999999999999999999998653 444556899999999987 45554321
Q ss_pred -----------ccCCCceEEEecCcchhh
Q 014666 304 -----------VSCDDIRYVVLDEADTLF 321 (420)
Q Consensus 304 -----------~~l~~l~~lVlDEaD~~l 321 (420)
.....+.+.||||+|-+|
T Consensus 227 ~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 227 SLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred hhccccCchhhhcccccceeEeeccccee
Confidence 113558899999999775
No 78
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.72 E-value=7e-17 Score=166.72 Aligned_cols=190 Identities=17% Similarity=0.156 Sum_probs=133.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhccc
Q 014666 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEAL 227 (420)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~ 227 (420)
+.+.......--+.-.+..+|.+....++ |+|+|+++|||+|||++.+..+++++-.
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw---------------------- 103 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW---------------------- 103 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc----------------------
Confidence 34444444433344578899999999888 9999999999999999999999985521
Q ss_pred CCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCccc-C
Q 014666 228 LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS-C 306 (420)
Q Consensus 228 ~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~-l 306 (420)
-...++|+++||+-|+.|....+..++.. ..+....||.........+-...+|+|+||..|.+.|.++... |
T Consensus 104 ----~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~l 177 (746)
T KOG0354|consen 104 ----RPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDEL 177 (746)
T ss_pred ----CCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhccccccccc
Confidence 12368999999999999977555554433 4555555664433333344456899999999999999886543 6
Q ss_pred CCceEEEecCcchhhccCCHHHHH-HHHHHchhhhcccCCCCceEEEEeecccchHHHH---HHHHhhcchh
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEIS-KILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ---LSSLMECLER 374 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~-~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~---~~~~~~~~~~ 374 (420)
+.+.++||||||+-....-...+. ..+. +++ ...|+|++|||++...... +..++-+...
T Consensus 178 s~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~-~k~-------~~~qILgLTASpG~~~~~v~~~I~~L~asldv 241 (746)
T KOG0354|consen 178 SDFSLIVFDECHRTSKNHPYNNIMREYLD-LKN-------QGNQILGLTASPGSKLEQVQNVIDNLCASLDV 241 (746)
T ss_pred ceEEEEEEcccccccccccHHHHHHHHHH-hhh-------ccccEEEEecCCCccHHHHHHHHHhhheeccc
Confidence 999999999999987555444443 3333 332 2459999999998765544 4444444333
No 79
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.72 E-value=6e-17 Score=173.21 Aligned_cols=166 Identities=19% Similarity=0.179 Sum_probs=135.2
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCC
Q 014666 153 IKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232 (420)
Q Consensus 153 ~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (420)
.......|| .+.++|++++-++..|..|++|||||+|||++.-..+...+ +
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al------------------~---------- 160 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL------------------R---------- 160 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH------------------H----------
Confidence 444456788 59999999999999999999999999999998555554311 1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEE
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 312 (420)
.+-++++.+|.++|.+|.|+.+........-.+++++|+... +.+..|+|.|.+.|.+++.++...+..+.+|
T Consensus 161 ~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~V 233 (1041)
T COG4581 161 DGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWV 233 (1041)
T ss_pred cCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceE
Confidence 344599999999999999998876533212234666776544 4567899999999999999999999999999
Q ss_pred EecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 313 VlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
|+||+|.|-|+..+...+.++-.|+. ..|+|++|||+|+..+
T Consensus 234 iFDEvHyi~D~eRG~VWEE~Ii~lP~--------~v~~v~LSATv~N~~E 275 (1041)
T COG4581 234 VFDEVHYIGDRERGVVWEEVIILLPD--------HVRFVFLSATVPNAEE 275 (1041)
T ss_pred EEEeeeeccccccchhHHHHHHhcCC--------CCcEEEEeCCCCCHHH
Confidence 99999999999989999999999984 7899999999997533
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.72 E-value=3e-17 Score=172.20 Aligned_cols=133 Identities=20% Similarity=0.238 Sum_probs=104.9
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|. .|+++|...+..+..| .|++++||+|||++|++|++...+ .++.++
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL----------------------------~g~~V~ 115 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNAL----------------------------TGKGAM 115 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhh----------------------------cCCceE
Confidence 566 7888888777777666 699999999999999999876221 345699
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCC---hHHHHHHhcCCCcEEEeChhHH-Hhchhc------CcccCCC
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVS---SKALEDVSNAPIGMLIATPSEV-LQHIED------RNVSCDD 308 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~---~~~~~~~l~~~~~IlV~TP~~L-~~~l~~------~~~~l~~ 308 (420)
||+||++||.|....+..+..++|+.+.+++++.. ...+.+....+|+|++|||++| .+++.. ....+..
T Consensus 116 VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~ 195 (762)
T TIGR03714 116 LVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRP 195 (762)
T ss_pred EeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhccccc
Confidence 99999999999999999999999999988777622 2223344446799999999999 555532 2345788
Q ss_pred ceEEEecCcchhhc
Q 014666 309 IRYVVLDEADTLFD 322 (420)
Q Consensus 309 l~~lVlDEaD~~l~ 322 (420)
+.++|+||||.||-
T Consensus 196 l~~~IVDEaDsILi 209 (762)
T TIGR03714 196 FNYVIVDEVDSVLL 209 (762)
T ss_pred CcEEEEecHhhHhh
Confidence 99999999999963
No 81
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.8e-17 Score=173.75 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=109.4
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|. .|+++|...--++..|+ |+.++||+|||++|++|++..++ .+..++
T Consensus 79 lg~-~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al----------------------------~G~~V~ 127 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAI----------------------------SGRGVH 127 (896)
T ss_pred cCC-CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHh----------------------------cCCCEE
Confidence 465 68999987766666665 89999999999999999996321 234599
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcC-cccC-----CCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR-NVSC-----DDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~-~~~l-----~~l~~ 311 (420)
||+||++||.|.+..+..+..++|+++++++||.....+.... .++|+||||++| .++|+.+ .+.+ ..+.+
T Consensus 128 VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~ 205 (896)
T PRK13104 128 IVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNF 205 (896)
T ss_pred EEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccce
Confidence 9999999999999999999999999999999998877654443 589999999999 9999876 3444 58999
Q ss_pred EEecCcchhh
Q 014666 312 VVLDEADTLF 321 (420)
Q Consensus 312 lVlDEaD~~l 321 (420)
+||||||.||
T Consensus 206 ~IvDEaDsiL 215 (896)
T PRK13104 206 AIVDEVDSIL 215 (896)
T ss_pred EEeccHhhhh
Confidence 9999999986
No 82
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.66 E-value=2.1e-15 Score=127.44 Aligned_cols=144 Identities=30% Similarity=0.418 Sum_probs=108.4
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q 014666 179 KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 258 (420)
+++++.++||+|||..++..+...+.. ....+++|++|++.++.|....+....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~--------------------------~~~~~~lv~~p~~~l~~~~~~~~~~~~ 54 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS--------------------------LKGGQVLVLAPTRELANQVAERLKELF 54 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc--------------------------ccCCCEEEEcCcHHHHHHHHHHHHHHh
Confidence 468999999999999998888773211 134679999999999999998888876
Q ss_pred ccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchh
Q 014666 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 259 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
.. ++.+..+.++............+.+|+|+|++.+...+...........++||||+|.+....+............
T Consensus 55 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~- 132 (144)
T cd00046 55 GE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP- 132 (144)
T ss_pred hC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCC-
Confidence 65 6667777776666555555567789999999999888876655567789999999999976654443211121111
Q ss_pred hhcccCCCCceEEEEeecc
Q 014666 339 SALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 339 ~~~~~~~~~~Q~v~~SATl 357 (420)
...+++++|||+
T Consensus 133 -------~~~~~i~~saTp 144 (144)
T cd00046 133 -------KDRQVLLLSATP 144 (144)
T ss_pred -------ccceEEEEeccC
Confidence 368999999995
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.66 E-value=1.3e-15 Score=167.41 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=103.6
Q ss_pred HHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC----
Q 014666 167 IQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT---- 242 (420)
Q Consensus 167 iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P---- 242 (420)
.....+.++.+++.++++|+||||||+ .+|.+-.- + + ......+++.-|
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle-----------------~-------g-~g~~g~I~~TQPRRlA 130 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLE-----------------L-------G-RGVKGLIGHTQPRRLA 130 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHH-----------------c-------C-CCCCCceeeCCCcHHH
Confidence 334455667778889999999999999 47743200 0 0 000112222334
Q ss_pred cHHHHHHHHHHHHH-hhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcc-hh
Q 014666 243 TEESADQGFHMAKF-ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD-TL 320 (420)
Q Consensus 243 treLa~Qi~~~~~~-l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD-~~ 320 (420)
+++||.||...+.. ++...|+.+.. . .....+++|+|+|||+|++.+..+.+ ++++++||||||| ++
T Consensus 131 ArsLA~RVA~El~~~lG~~VGY~vrf-------~---~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERs 199 (1294)
T PRK11131 131 ARTVANRIAEELETELGGCVGYKVRF-------N---DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERS 199 (1294)
T ss_pred HHHHHHHHHHHHhhhhcceeceeecC-------c---cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccc
Confidence 57888888887764 44444433211 1 11235689999999999999987655 8999999999999 68
Q ss_pred hccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcch
Q 014666 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373 (420)
Q Consensus 321 l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~ 373 (420)
++.+|... .+...++. .++.|+|+||||++. ..+.+.|...|.
T Consensus 200 Ln~DfLLg--~Lk~lL~~------rpdlKvILmSATid~--e~fs~~F~~apv 242 (1294)
T PRK11131 200 LNIDFILG--YLKELLPR------RPDLKVIITSATIDP--ERFSRHFNNAPI 242 (1294)
T ss_pred cccchHHH--HHHHhhhc------CCCceEEEeeCCCCH--HHHHHHcCCCCE
Confidence 98887643 22222322 247899999999975 355555555553
No 84
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=1.1e-15 Score=161.95 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=145.4
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcC-CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhh
Q 014666 146 LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRD 224 (420)
Q Consensus 146 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g-~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~ 224 (420)
..+|.+-..++. |+..+.+||.....+.+.+ .++++|||||+|||...++.+|+.+-.. .
T Consensus 294 selP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h-----------------~ 354 (1674)
T KOG0951|consen 294 SELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNH-----------------L 354 (1674)
T ss_pred cCCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcc-----------------c
Confidence 345666655553 7778999999999987765 6899999999999999999999844321 1
Q ss_pred cccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcc
Q 014666 225 EALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV 304 (420)
Q Consensus 225 ~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~ 304 (420)
+..........++++++|+++||..+...+.......|++|.-++|+.....+.. .+.+|+||||+. |+.+.++.-
T Consensus 355 r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK-~DiITRk~g 430 (1674)
T KOG0951|consen 355 REDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEK-WDIITRKSG 430 (1674)
T ss_pred ccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---hcceeEEeccch-hhhhhcccC
Confidence 1122223455689999999999999988888877888999999999877543322 347899999999 788877543
Q ss_pred c---CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 305 S---CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 305 ~---l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
+ .+-++++|+||.| |+....++.++.|....... ..+....++.+++|||+|+-
T Consensus 431 draY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~-ses~~e~~RlVGLSATLPNy 487 (1674)
T KOG0951|consen 431 DRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRR-SESTEEGSRLVGLSATLPNY 487 (1674)
T ss_pred chhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHH-hhhcccCceeeeecccCCch
Confidence 3 3458999999999 55566789999988876543 33445578999999999973
No 85
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.65 E-value=2.2e-15 Score=153.79 Aligned_cols=176 Identities=16% Similarity=0.223 Sum_probs=139.1
Q ss_pred HHHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCC
Q 014666 154 KAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232 (420)
Q Consensus 154 ~~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (420)
..|+. +||..+.+-|.++|..+++|+|+++..|||.||+++|.||.+-
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll------------------------------- 55 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALL------------------------------- 55 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHh-------------------------------
Confidence 44555 6999999999999999999999999999999999999999986
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
...-+|||.|-..|.......++.. |+.++++.+..+..+....+ ....++|.-+|++|..---...+.-..
T Consensus 56 ~~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~ 131 (590)
T COG0514 56 LEGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLP 131 (590)
T ss_pred cCCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCC
Confidence 1235999999999987766666664 67888888877666544433 334799999999985443222233566
Q ss_pred ceEEEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 309 IRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 309 l~~lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
+.++||||||++.+|| |+++...+-...... +++.+++++||-++.+..-+...+.
T Consensus 132 i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~------~~~p~~AlTATA~~~v~~DI~~~L~ 189 (590)
T COG0514 132 ISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGL------PNPPVLALTATATPRVRDDIREQLG 189 (590)
T ss_pred CceEEechHHHHhhcCCccCHhHHHHHHHHhhC------CCCCEEEEeCCCChHHHHHHHHHhc
Confidence 8899999999999998 999988877655443 2789999999999998887665554
No 86
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=1.9e-15 Score=159.75 Aligned_cols=129 Identities=18% Similarity=0.269 Sum_probs=110.4
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHH-HHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV-QVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l-~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
+|. .|+++|....-++..|+ |+.+.||+|||+++++|++ +.+ .+..+
T Consensus 78 lg~-~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-----------------------------~G~~V 125 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL-----------------------------TGKGV 125 (830)
T ss_pred hCC-CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-----------------------------cCCCE
Confidence 566 79999999887787775 9999999999999999996 422 23357
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcCc------ccCCCce
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCDDIR 310 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~~------~~l~~l~ 310 (420)
-|++||+.||.|.+..+..+..++|+++++++|+.+...+.... .++|++|||++| .++|+... ..+..+.
T Consensus 126 ~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~ 203 (830)
T PRK12904 126 HVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLN 203 (830)
T ss_pred EEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccc
Confidence 79999999999999999999999999999999999887766554 489999999999 88987653 2467899
Q ss_pred EEEecCcchhh
Q 014666 311 YVVLDEADTLF 321 (420)
Q Consensus 311 ~lVlDEaD~~l 321 (420)
++||||||.||
T Consensus 204 ~aIvDEaDsiL 214 (830)
T PRK12904 204 YAIVDEVDSIL 214 (830)
T ss_pred eEEEechhhhe
Confidence 99999999986
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=158.27 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=133.1
Q ss_pred HCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhH--hHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCC
Q 014666 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA--YLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla--~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (420)
..+| .+..+|++||-++..|..|++.|+|.+|||++ |++.+.+ ..+-
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq------------------------------~h~T 341 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ------------------------------KHMT 341 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH------------------------------hhcc
Confidence 3466 68899999999999999999999999999998 5555544 1456
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEec
Q 014666 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 315 (420)
|+++..|-++|.+|-++.|+.-... +.+++|+... +....+||.|.+.|..++.++..-+.++.++|||
T Consensus 342 R~iYTSPIKALSNQKfRDFk~tF~D----vgLlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFD 410 (1248)
T KOG0947|consen 342 RTIYTSPIKALSNQKFRDFKETFGD----VGLLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFD 410 (1248)
T ss_pred ceEecchhhhhccchHHHHHHhccc----cceeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEe
Confidence 7999999999999999999876543 3367776544 3457899999999999999998889999999999
Q ss_pred CcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHh
Q 014666 316 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369 (420)
Q Consensus 316 EaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~ 369 (420)
|+|.+-|...+--++.++=+||. .+++|++|||+|+..+ ++.+.-
T Consensus 411 EVHYiND~eRGvVWEEViIMlP~--------HV~~IlLSATVPN~~E-FA~WIG 455 (1248)
T KOG0947|consen 411 EVHYINDVERGVVWEEVIIMLPR--------HVNFILLSATVPNTLE-FADWIG 455 (1248)
T ss_pred eeeecccccccccceeeeeeccc--------cceEEEEeccCCChHH-HHHHhh
Confidence 99999888888888888888884 8999999999998543 444333
No 88
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.60 E-value=3.8e-15 Score=151.20 Aligned_cols=207 Identities=16% Similarity=0.201 Sum_probs=158.0
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.+.|+|..+|..+-++..|++.|.|.+|||.+.-.++.. .++ ..-|+|+..|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~------------------sLr----------~kQRVIYTSP 180 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAM------------------SLR----------EKQRVIYTSP 180 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHH------------------HHH----------hcCeEEeeCh
Confidence 578999999999999999999999999999986666654 222 2347999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhc
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~ 322 (420)
-++|.+|-|+.+..-.. .|++++|+... +..+..+|.|.+.|..++.++.-.+..+.|+|+||+|.|-|
T Consensus 181 IKALSNQKYREl~~EF~----DVGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRD 249 (1041)
T KOG0948|consen 181 IKALSNQKYRELLEEFK----DVGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRD 249 (1041)
T ss_pred hhhhcchhHHHHHHHhc----ccceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccc
Confidence 99999999998876443 25667776654 34467899999999999999998899999999999999998
Q ss_pred cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH--HHHHHHhhcchhc-----cCCCeeeeeeecccceEEe-
Q 014666 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG--EQLSSLMECLERD-----NAGKVTAMLLEMDQAEVFD- 394 (420)
Q Consensus 323 ~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~--~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~- 394 (420)
...+--++.-+=.||. +.+.+++|||+|+..+ +++...-..|.+| ......|++++....-.+.
T Consensus 250 kERGVVWEETIIllP~--------~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylv 321 (1041)
T KOG0948|consen 250 KERGVVWEETIILLPD--------NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLV 321 (1041)
T ss_pred cccceeeeeeEEeccc--------cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEE
Confidence 8766555555555664 7899999999998533 3334444566554 3456788888866654433
Q ss_pred ccccHHHHHHHHHHHHhhhhhc
Q 014666 395 LTESQDALKKKVVEAMDSLHLS 416 (420)
Q Consensus 395 ~~~~~~~~~~k~~~~~~~l~~~ 416 (420)
+-+...-....+..+++.|...
T Consensus 322 VDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 322 VDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred EecccccchHHHHHHHHHhhcc
Confidence 3455556667888888888765
No 89
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.53 E-value=1.4e-13 Score=132.26 Aligned_cols=183 Identities=21% Similarity=0.275 Sum_probs=131.5
Q ss_pred HHHHHHHH-CCCCCC-cHHHHhhHHHHhc-CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhccc
Q 014666 151 EMIKAVEK-MGLFVP-SEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEAL 227 (420)
Q Consensus 151 ~l~~~l~~-~g~~~p-t~iQ~~~i~~i~~-g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~ 227 (420)
.+.++|++ +|+..+ ++.|..++..+.. .+||+++.|||+||+++|.||.|-
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~-------------------------- 59 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV-------------------------- 59 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH--------------------------
Confidence 45566665 577644 8999999998765 589999999999999999999986
Q ss_pred CCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh------cCCCcEEEeChhHHHh----
Q 014666 228 LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS------NAPIGMLIATPSEVLQ---- 297 (420)
Q Consensus 228 ~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l------~~~~~IlV~TP~~L~~---- 297 (420)
.+...||+.|..+|......++..+ .+.+-.+....+..+..+.+ +....||.-||+....
T Consensus 60 -----~~gITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ 130 (641)
T KOG0352|consen 60 -----HGGITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQ 130 (641)
T ss_pred -----hCCeEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHH
Confidence 2336999999999998777777665 45555666666655554443 3446789999986432
Q ss_pred -chhcCcccCCCceEEEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHH--HHHHhhcc
Q 014666 298 -HIEDRNVSCDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ--LSSLMECL 372 (420)
Q Consensus 298 -~l~~~~~~l~~l~~lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~--~~~~~~~~ 372 (420)
+|+ +...-.-|.|+|+||||+...|| |+++...+-. |+..+ ++..-++++||-++.+++- ++..+++|
T Consensus 131 ~lLn-~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~-LRS~~-----~~vpwvALTATA~~~VqEDi~~qL~L~~P 203 (641)
T KOG0352|consen 131 KLLN-GLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS-LRSVC-----PGVPWVALTATANAKVQEDIAFQLKLRNP 203 (641)
T ss_pred HHHH-HHhhhceeeeEEechhhhHhhhccccCcchhhhhh-HHhhC-----CCCceEEeecccChhHHHHHHHHHhhcCc
Confidence 222 22233558999999999999997 7877655432 22222 4788999999999998874 34556677
Q ss_pred hhc
Q 014666 373 ERD 375 (420)
Q Consensus 373 ~~~ 375 (420)
+.+
T Consensus 204 VAi 206 (641)
T KOG0352|consen 204 VAI 206 (641)
T ss_pred HHh
Confidence 554
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.52 E-value=8.4e-14 Score=150.06 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=113.9
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
..|+|+|..+......+.-+|+.||||+|||.+.++.+.. +. . .....+++|.+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~-----------------~--------~~~~~gi~~aL 338 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LI-----------------D--------QGLADSIIFAL 338 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HH-----------------H--------hCCCCeEEEEC
Confidence 4799999988655445677999999999999997776543 11 1 11235799999
Q ss_pred CcHHHHHHHHHHHHHhhcc--CCCceecccCCCChHHHH---------------------HHhc---C---CCcEEEeCh
Q 014666 242 TTEESADQGFHMAKFISHC--ARLDSSMENGGVSSKALE---------------------DVSN---A---PIGMLIATP 292 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l~~~--~~i~~~~~~gg~~~~~~~---------------------~~l~---~---~~~IlV~TP 292 (420)
||+++++|++..+..+... ....+.+.+|........ ..+. + -.+|+|||.
T Consensus 339 PT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~Ti 418 (878)
T PRK09694 339 PTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTI 418 (878)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCH
Confidence 9999999999998764432 134566666654322110 0011 1 158999999
Q ss_pred hHHHhchh-cCcccCCC----ceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHH
Q 014666 293 SEVLQHIE-DRNVSCDD----IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 365 (420)
Q Consensus 293 ~~L~~~l~-~~~~~l~~----l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~ 365 (420)
..++..+- .++..+.. -++|||||+|.+ +......+..+++.+.. ....+|++|||+|..+.+.+
T Consensus 419 DQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~-------~g~~vIllSATLP~~~r~~L 488 (878)
T PRK09694 419 DQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQ-------AGGSVILLSATLPATLKQKL 488 (878)
T ss_pred HHHHHHHHccchHHHHHHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHh-------cCCcEEEEeCCCCHHHHHHH
Confidence 88875433 23222222 258999999987 44445566777776543 35679999999998876543
No 91
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=4.2e-14 Score=149.58 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=107.1
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.|. .|+++|...--.+.+|+ |+.++||+|||++|.+|++...+ .+..|.
T Consensus 79 lgm-~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al----------------------------~g~~Vh 127 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNAL----------------------------TGKGVH 127 (908)
T ss_pred hCC-CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHh----------------------------cCCCEE
Confidence 465 68999987655555554 89999999999999999987332 344599
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcC-cccC-----CCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR-NVSC-----DDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~-~~~l-----~~l~~ 311 (420)
||+||++||.|....+..+..++|+++.++.++.+... +.-...|+|++|||++| .++|+.+ .+.. ..+.+
T Consensus 128 IvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~ 205 (908)
T PRK13107 128 VITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHY 205 (908)
T ss_pred EEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccce
Confidence 99999999999999999999999999999999888643 33344789999999999 8888766 3333 67899
Q ss_pred EEecCcchhhc
Q 014666 312 VVLDEADTLFD 322 (420)
Q Consensus 312 lVlDEaD~~l~ 322 (420)
+||||||.||-
T Consensus 206 aIvDEvDsiLi 216 (908)
T PRK13107 206 ALIDEVDSILI 216 (908)
T ss_pred eeecchhhhcc
Confidence 99999998874
No 92
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.52 E-value=2e-13 Score=150.94 Aligned_cols=170 Identities=13% Similarity=0.071 Sum_probs=106.8
Q ss_pred CCCCCCcHHHH---hhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCC
Q 014666 159 MGLFVPSEIQC---VGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235 (420)
Q Consensus 159 ~g~~~pt~iQ~---~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (420)
..|....||.. ..+..+..++.+|++|+||||||.. +|.+-.- .. .....
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle-------------------~~------~~~~~ 112 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLE-------------------LG------RGSHG 112 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHH-------------------cC------CCCCc
Confidence 34555556554 3455666778899999999999994 4644300 00 01122
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCC-CChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEe
Q 014666 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG-VSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg-~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVl 314 (420)
++++.-|.|--|..+...+.. ..+..++..+|. ..... .......|+|+|||+|+..+..+.+ ++++++|||
T Consensus 113 ~I~~tQPRRlAA~svA~RvA~---elg~~lG~~VGY~vR~~~---~~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~III 185 (1283)
T TIGR01967 113 LIGHTQPRRLAARTVAQRIAE---ELGTPLGEKVGYKVRFHD---QVSSNTLVKLMTDGILLAETQQDRF-LSRYDTIII 185 (1283)
T ss_pred eEecCCccHHHHHHHHHHHHH---HhCCCcceEEeeEEcCCc---ccCCCceeeeccccHHHHHhhhCcc-cccCcEEEE
Confidence 444556766665555443332 234444444442 11111 1234578999999999999987654 899999999
Q ss_pred cCcc-hhhccCCHHH-HHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcch
Q 014666 315 DEAD-TLFDRGFGPE-ISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373 (420)
Q Consensus 315 DEaD-~~l~~~~~~~-l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~ 373 (420)
|||| ++++.+|.-. +..++... ++.|+|+||||++. ..+.+.|...|.
T Consensus 186 DEaHERsL~~D~LL~lLk~il~~r---------pdLKlIlmSATld~--~~fa~~F~~apv 235 (1283)
T TIGR01967 186 DEAHERSLNIDFLLGYLKQLLPRR---------PDLKIIITSATIDP--ERFSRHFNNAPI 235 (1283)
T ss_pred cCcchhhccchhHHHHHHHHHhhC---------CCCeEEEEeCCcCH--HHHHHHhcCCCE
Confidence 9999 6998887654 45554332 37899999999974 455554544453
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=2.2e-13 Score=140.26 Aligned_cols=136 Identities=17% Similarity=0.168 Sum_probs=95.7
Q ss_pred EEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC
Q 014666 182 VLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261 (420)
Q Consensus 182 l~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~ 261 (420)
|+.|+||||||.+|+..+...+ ..+.++|||+|+++|+.|++..++...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l----------------------------~~g~~vLvlvP~i~L~~Q~~~~l~~~f--- 49 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL----------------------------ALGKSVLVLVPEIALTPQMIQRFKYRF--- 49 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH----------------------------HcCCeEEEEeCcHHHHHHHHHHHHHHh---
Confidence 4689999999999976654422 135579999999999999999887643
Q ss_pred CCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccC---CH---HHHHH
Q 014666 262 RLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG---FG---PEISK 331 (420)
Q Consensus 262 ~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~---~~---~~l~~ 331 (420)
+..+..++|+.+..+....+ ...++|||||+..+. ..+.++.+|||||+|.....+ .. .++..
T Consensus 50 ~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~ 122 (505)
T TIGR00595 50 GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAV 122 (505)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHH
Confidence 56778888887665433332 345799999999773 347889999999999765322 11 22322
Q ss_pred HHHHchhhhcccCCCCceEEEEeecccchHHHH
Q 014666 332 ILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 332 Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
..... .+.++|++|||.+.+....
T Consensus 123 ~ra~~---------~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 123 YRAKK---------FNCPVVLGSATPSLESYHN 146 (505)
T ss_pred HHHHh---------cCCCEEEEeCCCCHHHHHH
Confidence 33322 3789999999966544433
No 94
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.49 E-value=1.1e-13 Score=123.40 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=100.8
Q ss_pred CCcHHHHhhHHHHhc-------CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCC
Q 014666 163 VPSEIQCVGIPAVLN-------GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~-------g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (420)
.+++.|.+++..+.. ++.+++.++||||||.+++..+.... .
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------------------------~-- 51 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------------------------R-- 51 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------------------------C--
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------------------------c--
Confidence 478999999998773 68999999999999999886555411 0
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCCce-----------ecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC--
Q 014666 236 RAIVLCTTEESADQGFHMAKFISHCARLDS-----------SMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-- 302 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~-----------~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~-- 302 (420)
++||++|+..|+.|....+..+........ ...............-....+|+++|...|...+...
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 131 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKK 131 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccc
Confidence 699999999999999998866543211100 0001111111122233456789999999998886532
Q ss_pred ---------cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 303 ---------NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 303 ---------~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
........+||+||||++....- ...|+. . ....+|+||||+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~-~---------~~~~~l~lTATp~ 183 (184)
T PF04851_consen 132 IDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE-F---------KAAFILGLTATPF 183 (184)
T ss_dssp ------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH-S---------SCCEEEEEESS-S
T ss_pred cccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc-C---------CCCeEEEEEeCcc
Confidence 12345678999999998864321 444444 2 3678999999985
No 95
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.44 E-value=2.5e-12 Score=121.94 Aligned_cols=186 Identities=20% Similarity=0.330 Sum_probs=139.1
Q ss_pred cccCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHh
Q 014666 143 FQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQML 221 (420)
Q Consensus 143 f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l 221 (420)
-++|+.+......|.+ +....+.|.|..+|.+.+.|.|+++..|||-||+++|.+|+|-
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~-------------------- 132 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC-------------------- 132 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh--------------------
Confidence 3468888888888877 4678899999999999999999999999999999999999986
Q ss_pred hhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----h--cCCCcEEEeChhHH
Q 014666 222 RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----S--NAPIGMLIATPSEV 295 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l--~~~~~IlV~TP~~L 295 (420)
....+|||+|...|.....-.++.+ |+....+....+..+-.+. . .....++..||+.+
T Consensus 133 -----------adg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpeki 197 (695)
T KOG0353|consen 133 -----------ADGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKI 197 (695)
T ss_pred -----------cCCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHH
Confidence 3456999999999997766666665 5666666555554332221 1 12356889999988
Q ss_pred Hhc---hh--cCcccCCCceEEEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHH
Q 014666 296 LQH---IE--DRNVSCDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSL 368 (420)
Q Consensus 296 ~~~---l~--~~~~~l~~l~~lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~ 368 (420)
..- +. ...+....+.++.+||+|+...+| |+++... +..|.++. ++..++.++||-++.+..-++..
T Consensus 198 aksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~-l~ilkrqf-----~~~~iigltatatn~vl~d~k~i 271 (695)
T KOG0353|consen 198 AKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKA-LGILKRQF-----KGAPIIGLTATATNHVLDDAKDI 271 (695)
T ss_pred HHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHH-HHHHHHhC-----CCCceeeeehhhhcchhhHHHHH
Confidence 543 22 234556778999999999999887 6666543 33333332 47889999999998887766544
Q ss_pred h
Q 014666 369 M 369 (420)
Q Consensus 369 ~ 369 (420)
+
T Consensus 272 l 272 (695)
T KOG0353|consen 272 L 272 (695)
T ss_pred H
Confidence 4
No 96
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.43 E-value=1.5e-12 Score=129.46 Aligned_cols=180 Identities=14% Similarity=0.152 Sum_probs=128.8
Q ss_pred cCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CC----ceecccC----C-----------CChHHHHHHh-----
Q 014666 227 LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RL----DSSMENG----G-----------VSSKALEDVS----- 281 (420)
Q Consensus 227 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i----~~~~~~g----g-----------~~~~~~~~~l----- 281 (420)
..+..-.+|++|||+|+|..|.++.+.+..+.... .+ +..--+| + ..........
T Consensus 30 ~RDQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~D 109 (442)
T PF06862_consen 30 FRDQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNND 109 (442)
T ss_pred hhccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCcc
Confidence 34445578999999999999999999888776431 10 0111122 0 0000111110
Q ss_pred -------------------cCCCcEEEeChhHHHhchhc------CcccCCCceEEEecCcchhhccCCHHHHHHHHHHc
Q 014666 282 -------------------NAPIGMLIATPSEVLQHIED------RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336 (420)
Q Consensus 282 -------------------~~~~~IlV~TP~~L~~~l~~------~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l 336 (420)
-.+.|||||+|-.|...+.. ....|++|.++|+|.||.|+ |+.|+++..|+.+|
T Consensus 110 D~FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~l 188 (442)
T PF06862_consen 110 DCFRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHL 188 (442)
T ss_pred ceEEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHh
Confidence 02358999999999999984 34568999999999999887 99999999999999
Q ss_pred hhhhcccCCCC----------------ceEEEEeecccchHHHHHHHHhhcchhc------cC--CCeeeeeeecccceE
Q 014666 337 KDSALKSNGQG----------------FQTILVTAAIAEMLGEQLSSLMECLERD------NA--GKVTAMLLEMDQAEV 392 (420)
Q Consensus 337 ~~~~~~~~~~~----------------~Q~v~~SATl~~~v~~~~~~~~~~~~~~------~~--~~~~~~~~~v~~~~~ 392 (420)
+..+.++++.+ +|||+||+...+++..+++++|.|.... .. |.+.++.+.+.|...
T Consensus 189 N~~P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~ 268 (442)
T PF06862_consen 189 NLQPKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQ 268 (442)
T ss_pred ccCCCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEE
Confidence 99888887766 9999999999999999999999987432 22 677788888888744
Q ss_pred -EeccccHHHHHHHHH
Q 014666 393 -FDLTESQDALKKKVV 407 (420)
Q Consensus 393 -~~~~~~~~~~~~k~~ 407 (420)
+....-.++.+.++.
T Consensus 269 r~~~~s~~~~~d~Rf~ 284 (442)
T PF06862_consen 269 RFDCSSPADDPDARFK 284 (442)
T ss_pred EecCCCcchhhhHHHH
Confidence 444333344444443
No 97
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.43 E-value=1.6e-12 Score=142.36 Aligned_cols=146 Identities=17% Similarity=0.248 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHH----HHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhh
Q 014666 148 LKAEMIKAVEKMGLFVPSEIQCVGIP----AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRR 223 (420)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~----~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~ 223 (420)
+++.+...+...||+ +.|.|.+.+. .+.+|+++++.||||+|||++|++|++....
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------------------- 290 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------------------- 290 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-------------------
Confidence 344677788888996 7899998666 5667899999999999999999999987321
Q ss_pred hcccCCCCCCCCeEEEEcCcHHHHHHHHH-HHHHhhccCC--CceecccCCCChH---H---------------------
Q 014666 224 DEALLPMKPMHPRAIVLCTTEESADQGFH-MAKFISHCAR--LDSSMENGGVSSK---A--------------------- 276 (420)
Q Consensus 224 ~~~~~~~~~~~~~~Lil~PtreLa~Qi~~-~~~~l~~~~~--i~~~~~~gg~~~~---~--------------------- 276 (420)
.+.++||.+||++|..|+.. .+..+.+..+ ++++++.|+.++- .
T Consensus 291 ---------~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~ 361 (850)
T TIGR01407 291 ---------TEKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQV 361 (850)
T ss_pred ---------CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 23479999999999999755 5666655444 5555555543220 0
Q ss_pred -----------------------------------------------HHHHhcCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 277 -----------------------------------------------LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 277 -----------------------------------------------~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..+.....++|||+...-|+..+......+...
T Consensus 362 ~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~ 441 (850)
T TIGR01407 362 LVWLTETETGDLDELNLKGGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSF 441 (850)
T ss_pred HHHhccCCccCHhhccCCCcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCC
Confidence 000001123799999998887775443334566
Q ss_pred eEEEecCcchhhc
Q 014666 310 RYVVLDEADTLFD 322 (420)
Q Consensus 310 ~~lVlDEaD~~l~ 322 (420)
++|||||||.|.+
T Consensus 442 ~~lIiDEAH~L~d 454 (850)
T TIGR01407 442 RDLIIDEAHHLPD 454 (850)
T ss_pred CEEEEECcchHHH
Confidence 8999999999864
No 98
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.42 E-value=1.2e-12 Score=141.10 Aligned_cols=178 Identities=19% Similarity=0.178 Sum_probs=135.9
Q ss_pred HHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCC
Q 014666 152 MIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK 231 (420)
Q Consensus 152 l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 231 (420)
+......+|+..+.+-|.++|..++.|+|+++..|||.||+++|.||++-
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------------------------ 302 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL------------------------------ 302 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc------------------------------
Confidence 33344558999999999999999999999999999999999999999975
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH---HhcC---CCcEEEeChhHHHhchh--cCc
Q 014666 232 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSNA---PIGMLIATPSEVLQHIE--DRN 303 (420)
Q Consensus 232 ~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~---~l~~---~~~IlV~TP~~L~~~l~--~~~ 303 (420)
.++-.|||.|-..|.......+. ..+|....+.++.....+.. .+.. .++|+.-||+.+...-. +-.
T Consensus 303 -~~gitvVISPL~SLm~DQv~~L~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~ 377 (941)
T KOG0351|consen 303 -LGGVTVVISPLISLMQDQVTHLS----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESL 377 (941)
T ss_pred -cCCceEEeccHHHHHHHHHHhhh----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHH
Confidence 34479999999999866544442 23788888888887754332 2222 47999999998865432 122
Q ss_pred ccCCC---ceEEEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 304 VSCDD---IRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 304 ~~l~~---l~~lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
..+.. +.++||||||+...|| |++....+....... +.+.+|+++||.+..++.-+-..++
T Consensus 378 ~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~------~~vP~iALTATAT~~v~~DIi~~L~ 443 (941)
T KOG0351|consen 378 ADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRF------PGVPFIALTATATERVREDVIRSLG 443 (941)
T ss_pred HhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhC------CCCCeEEeehhccHHHHHHHHHHhC
Confidence 23444 8999999999999997 888877766555442 3589999999999988876655554
No 99
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.42 E-value=7.8e-12 Score=128.01 Aligned_cols=167 Identities=17% Similarity=0.223 Sum_probs=129.3
Q ss_pred CCCHHHHH-HHHHCCCCCCcHHHHhhHHHHhcC------CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 147 GLKAEMIK-AVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 147 ~l~~~l~~-~l~~~g~~~pt~iQ~~~i~~i~~g------~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
.....+++ .+..+.| .+|..|+.++..|... ++=++++--|||||++.++.++..+
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai---------------- 308 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI---------------- 308 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH----------------
Confidence 34444444 4577888 6999999999998764 5689999999999999999999844
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHH---HHhcCC-CcEEEeChhHH
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE---DVSNAP-IGMLIATPSEV 295 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~---~~l~~~-~~IlV~TP~~L 295 (420)
..|.++..++||--||.|-+..+..+....++++..++|........ ..+.+| .+|||||..-+
T Consensus 309 ------------~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 309 ------------EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred ------------HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 25788999999999999999999999999999999999977654333 233444 89999999876
Q ss_pred HhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCC-CceEEEEeecccch
Q 014666 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQ-GFQTILVTAAIAEM 360 (420)
Q Consensus 296 ~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~-~~Q~v~~SATl~~~ 360 (420)
.+ ...++++.++|+||-|++- -+=+..+..- +. .+-+++||||.-+.
T Consensus 377 Qd-----~V~F~~LgLVIiDEQHRFG-----V~QR~~L~~K--------G~~~Ph~LvMTATPIPR 424 (677)
T COG1200 377 QD-----KVEFHNLGLVIIDEQHRFG-----VHQRLALREK--------GEQNPHVLVMTATPIPR 424 (677)
T ss_pred hc-----ceeecceeEEEEecccccc-----HHHHHHHHHh--------CCCCCcEEEEeCCCchH
Confidence 54 3458999999999999873 2223333322 23 56799999997553
No 100
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.40 E-value=2.1e-12 Score=131.21 Aligned_cols=146 Identities=18% Similarity=0.183 Sum_probs=101.0
Q ss_pred CCCcHHHHhhHHHHhc----CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 162 FVPSEIQCVGIPAVLN----GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~----g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
..+.++|.+++..+.+ ++..++++|||+|||+.++..+.. ....+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-------------------------------~~~~~ 83 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-------------------------------LKRST 83 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-------------------------------hcCCE
Confidence 3689999999999888 899999999999999998877755 22339
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCc
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 317 (420)
||||||++|+.|..+.+....... ..+.. +||.... ... ..|.|+|-..+...-....+......+||+|||
T Consensus 84 Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~-~~~~~~~-----~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~ 155 (442)
T COG1061 84 LVLVPTKELLDQWAEALKKFLLLN-DEIGI-YGGGEKE-----LEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEV 155 (442)
T ss_pred EEEECcHHHHHHHHHHHHHhcCCc-cccce-ecCceec-----cCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEcc
Confidence 999999999999876555543321 12223 3333221 111 369999998887642112222346899999999
Q ss_pred chhhccCCHHHHHHHHHHchhhhcccCCCCce-EEEEeecccc
Q 014666 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQ-TILVTAAIAE 359 (420)
Q Consensus 318 D~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q-~v~~SATl~~ 359 (420)
|++.... ...+...+. ... .+++|||++.
T Consensus 156 Hh~~a~~----~~~~~~~~~---------~~~~~LGLTATp~R 185 (442)
T COG1061 156 HHLPAPS----YRRILELLS---------AAYPRLGLTATPER 185 (442)
T ss_pred ccCCcHH----HHHHHHhhh---------cccceeeeccCcee
Confidence 9996444 344444443 223 8999999764
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.39 E-value=1.9e-12 Score=135.56 Aligned_cols=184 Identities=17% Similarity=0.144 Sum_probs=143.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhH--HHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGI--PAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i--~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
.|...+++..........|...++.||.+++ |.++.++|+|+.+||+.|||++.-+-++...+.
T Consensus 202 ~~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~-------------- 267 (1008)
T KOG0950|consen 202 GFAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC-------------- 267 (1008)
T ss_pred hhhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH--------------
Confidence 3444455555555566789999999999997 468899999999999999999998888774432
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhch
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
.+..++.+.|....+..-...+..+....|+.+-..+|...... ..+.-++.|||-++-..++
T Consensus 268 -------------~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkansli 330 (1008)
T KOG0950|consen 268 -------------RRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLI 330 (1008)
T ss_pred -------------HhhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHH
Confidence 12348899999999888888888899999999988887665432 2334689999999877666
Q ss_pred hc--CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 300 ED--RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 300 ~~--~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
.+ ..-.+..+.++|+||.|.+.|.+.+..++.++..+-.... ...+|+|++|||+++
T Consensus 331 n~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~---~~~~~iIGMSATi~N 389 (1008)
T KOG0950|consen 331 NSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENL---ETSVQIIGMSATIPN 389 (1008)
T ss_pred HHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcc---ccceeEeeeecccCC
Confidence 53 1224677999999999999999999999999887654332 234899999999997
No 102
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=3.1e-12 Score=134.69 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=105.0
Q ss_pred CCcHHHHhhHHHHh-cC--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEE
Q 014666 163 VPSEIQCVGIPAVL-NG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~-~g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Li 239 (420)
.+.|+|.+++..+. +| +..+++.|||+|||++.+..+.. .+.++||
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-------------------------------l~k~tLI 303 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-------------------------------VKKSCLV 303 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-------------------------------hCCCEEE
Confidence 68999999999876 44 47899999999999997655443 1235999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC--------cccCCCceE
Q 014666 240 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------NVSCDDIRY 311 (420)
Q Consensus 240 l~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~--------~~~l~~l~~ 311 (420)
|||+..|+.|....+..+.......+..+.|+... .......|+|+|...+.....+. .+.-....+
T Consensus 304 Lvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gL 378 (732)
T TIGR00603 304 LCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGL 378 (732)
T ss_pred EeCcHHHHHHHHHHHHHhcCCCCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCE
Confidence 99999999999999998765444555555554322 11223679999998775433221 112245789
Q ss_pred EEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 312 lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
||+||||++- ......++..+. ....+++|||+..
T Consensus 379 II~DEvH~lp----A~~fr~il~~l~---------a~~RLGLTATP~R 413 (732)
T TIGR00603 379 ILLDEVHVVP----AAMFRRVLTIVQ---------AHCKLGLTATLVR 413 (732)
T ss_pred EEEEcccccc----HHHHHHHHHhcC---------cCcEEEEeecCcc
Confidence 9999999884 345556666664 3457999999963
No 103
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.38 E-value=2.8e-12 Score=139.01 Aligned_cols=135 Identities=24% Similarity=0.262 Sum_probs=99.8
Q ss_pred HHCCCCCCcHHHHhhHH----HHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCC
Q 014666 157 EKMGLFVPSEIQCVGIP----AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232 (420)
Q Consensus 157 ~~~g~~~pt~iQ~~~i~----~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (420)
.-.|| .+.+-|.+... ++.++..++++|+||+|||++|++|++...
T Consensus 240 ~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------------------------- 289 (820)
T PRK07246 240 ALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------------------------- 289 (820)
T ss_pred ccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----------------------------
Confidence 33466 57899988544 345688999999999999999999988721
Q ss_pred CCCeEEEEcCcHHHHHHH-HHHHHHhhccCCCceecccCCCChHHHH---HHh---------------------------
Q 014666 233 MHPRAIVLCTTEESADQG-FHMAKFISHCARLDSSMENGGVSSKALE---DVS--------------------------- 281 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi-~~~~~~l~~~~~i~~~~~~gg~~~~~~~---~~l--------------------------- 281 (420)
.+.++||++||++|+.|+ ...+..+.+..++++.++.|+.++-... ..+
T Consensus 290 ~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD 369 (820)
T PRK07246 290 DQRQIIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGD 369 (820)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCC
Confidence 246799999999999999 5778888888888877777665421100 000
Q ss_pred -----------------------------------------cCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchh
Q 014666 282 -----------------------------------------NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 282 -----------------------------------------~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~ 320 (420)
....+|||+...-|...+..+.. +...++|||||||++
T Consensus 370 ~~El~~~~~~~~~w~~i~~~~~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l 448 (820)
T PRK07246 370 LDEIKQKQRYAAYFDQLKHDGNLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKL 448 (820)
T ss_pred HhhccCCccccHHHHHhhccCCCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchh
Confidence 01127999999988877654433 577899999999998
Q ss_pred hc
Q 014666 321 FD 322 (420)
Q Consensus 321 l~ 322 (420)
-+
T Consensus 449 ~~ 450 (820)
T PRK07246 449 ML 450 (820)
T ss_pred HH
Confidence 54
No 104
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.35 E-value=6.1e-12 Score=131.14 Aligned_cols=125 Identities=12% Similarity=0.119 Sum_probs=88.3
Q ss_pred HHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHH
Q 014666 172 IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251 (420)
Q Consensus 172 i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 251 (420)
..++.+++.+++.|+||+|||++|++|++.++.. ..+.++||++||++|+.|++
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~--------------------------~~~~rvlIstpT~~Lq~Ql~ 63 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE--------------------------RPDQKIAIAVPTLALMGQLW 63 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh--------------------------ccCceEEEECCcHHHHHHHH
Confidence 3455678999999999999999999999984321 12468999999999999999
Q ss_pred HHHHHhh-ccC--CCceecccCCCChHH----------------------------------------------------
Q 014666 252 HMAKFIS-HCA--RLDSSMENGGVSSKA---------------------------------------------------- 276 (420)
Q Consensus 252 ~~~~~l~-~~~--~i~~~~~~gg~~~~~---------------------------------------------------- 276 (420)
..+..+. +.. .+++.++.|+.++-.
T Consensus 64 ~~l~~l~~~~l~~~i~~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD 143 (636)
T TIGR03117 64 SELERLTAEGLAGPVQAGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHD 143 (636)
T ss_pred HHHHHHHHhhcCCCeeEEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCC
Confidence 9888887 332 344444333221100
Q ss_pred ----------------------------HHHHh---cCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhc
Q 014666 277 ----------------------------LEDVS---NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322 (420)
Q Consensus 277 ----------------------------~~~~l---~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~ 322 (420)
..+.. ...+||||++..-|...+..+.-.+....+|||||||++.+
T Consensus 144 ~~el~~~~~~~~~~~~~~~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 144 LKAVATLLNRQDDVTLAIREDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred HhhccCCcCcchhhhccccCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 00000 13469999999988877655433467789999999999864
No 105
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.34 E-value=1.6e-11 Score=136.22 Aligned_cols=166 Identities=16% Similarity=0.113 Sum_probs=107.8
Q ss_pred CCcHHHHhhHHHHh----c-CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 163 VPSEIQCVGIPAVL----N-GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~----~-g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.+.++|..||..+. . .+.++++.+||||||++.+ .++..+++ .....++
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~-------------------------~~~~~rV 466 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLK-------------------------AKRFRRI 466 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHh-------------------------cCccCeE
Confidence 58999999998764 3 3679999999999998843 34442221 1134589
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhc-----CcccCCCceEE
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED-----RNVSCDDIRYV 312 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~-----~~~~l~~l~~l 312 (420)
|||+|+++|+.|....|..+....+..+..+++...... ........|+|+|...|...+.. ..+.+..+++|
T Consensus 467 LfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlI 544 (1123)
T PRK11448 467 LFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCI 544 (1123)
T ss_pred EEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEE
Confidence 999999999999999988874322222222222111111 11233468999999998776532 12456788999
Q ss_pred EecCcchhhc---------cCC------HHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHH
Q 014666 313 VLDEADTLFD---------RGF------GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366 (420)
Q Consensus 313 VlDEaD~~l~---------~~~------~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~ 366 (420)
|+||||+-.. .+| ...+..|+.++ +.-.|+||||.......++.
T Consensus 545 IiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF----------dA~~IGLTATP~r~t~~~FG 603 (1123)
T PRK11448 545 IVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF----------DAVKIGLTATPALHTTEIFG 603 (1123)
T ss_pred EEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc----------CccEEEEecCCccchhHHhC
Confidence 9999998531 111 24455666543 34679999999765544443
No 106
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.25 E-value=5.3e-11 Score=124.53 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=113.6
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.|..||.+.+-.+-.+..+++.|||.+|||++-...+ + +.+|.. ...-+|+++|
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-E-----------------KVLRes--------D~~VVIyvaP 564 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-E-----------------KVLRES--------DSDVVIYVAP 564 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-H-----------------HHHhhc--------CCCEEEEecc
Confidence 6889999999999999999999999999998733333 2 133322 2335889999
Q ss_pred cHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC---cccCCCceEEEecCcc
Q 014666 243 TEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR---NVSCDDIRYVVLDEAD 318 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~---~~~l~~l~~lVlDEaD 318 (420)
|++|++|+...+..-.... -.+-..+.|.....- +...-+|+|+|+-|+.+-.+|... .-+..+++++|+||+|
T Consensus 565 tKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEY--sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH 642 (1330)
T KOG0949|consen 565 TKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEY--SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVH 642 (1330)
T ss_pred hHHHhhhhhHHHHHhhccCccccchhhHhhhhHHh--cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhh
Confidence 9999999777665543221 222233333332221 222236999999999998888763 3357889999999999
Q ss_pred hhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 319 ~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
.+..+.-+--.+.++..+ .+.++++|||+.+.. .+..|++
T Consensus 643 ~iG~~ed~l~~Eqll~li----------~CP~L~LSATigN~~--l~qkWln 682 (1330)
T KOG0949|consen 643 LIGNEEDGLLWEQLLLLI----------PCPFLVLSATIGNPN--LFQKWLN 682 (1330)
T ss_pred hccccccchHHHHHHHhc----------CCCeeEEecccCCHH--HHHHHHH
Confidence 886543222223333322 678999999998742 3455555
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.25 E-value=6e-11 Score=126.63 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=119.3
Q ss_pred cHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcH
Q 014666 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTE 244 (420)
Q Consensus 165 t~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~Ptr 244 (420)
+....+.+.++.+.+-+|++|+||||||...-.-+++... ....++.+.-|-|
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~---------------------------~~~g~I~~tQPRR 104 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---------------------------GIAGKIGCTQPRR 104 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---------------------------ccCCeEEecCchH
Confidence 4445556667888899999999999999987666666110 1223455555666
Q ss_pred HHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcch-hhcc
Q 014666 245 ESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT-LFDR 323 (420)
Q Consensus 245 eLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~-~l~~ 323 (420)
--|..+.. .++...+.+++-.+| +... ..........|-+.|.|.|+..++++.+ |+.+++|||||||. -++.
T Consensus 105 lAArsvA~---RvAeel~~~~G~~VG-Y~iR-fe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~t 178 (845)
T COG1643 105 LAARSVAE---RVAEELGEKLGETVG-YSIR-FESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNT 178 (845)
T ss_pred HHHHHHHH---HHHHHhCCCcCceee-EEEE-eeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHH
Confidence 44444433 333333333332222 1110 0112234467999999999999998776 89999999999994 3332
Q ss_pred CCH-HHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCCCeeeeeeecccceEEeccccHHH-
Q 014666 324 GFG-PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDA- 401 (420)
Q Consensus 324 ~~~-~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 401 (420)
.|. .-+..++..++ .+..+|++|||+..+ -++.|+.+.-++.+. ...++|.-++...... +.
T Consensus 179 DilLgllk~~~~~rr--------~DLKiIimSATld~~---rfs~~f~~apvi~i~---GR~fPVei~Y~~~~~~--d~~ 242 (845)
T COG1643 179 DILLGLLKDLLARRR--------DDLKLIIMSATLDAE---RFSAYFGNAPVIEIE---GRTYPVEIRYLPEAEA--DYI 242 (845)
T ss_pred HHHHHHHHHHHhhcC--------CCceEEEEecccCHH---HHHHHcCCCCEEEec---CCccceEEEecCCCCc--chh
Confidence 221 11223333332 369999999999853 235566643233222 2233443333222221 33
Q ss_pred HHHHHHHHHhhhhhcCCCC
Q 014666 402 LKKKVVEAMDSLHLSAPGS 420 (420)
Q Consensus 402 ~~~k~~~~~~~l~~~~p~~ 420 (420)
+...+..+++......+|+
T Consensus 243 l~~ai~~~v~~~~~~~~Gd 261 (845)
T COG1643 243 LLDAIVAAVDIHLREGSGS 261 (845)
T ss_pred HHHHHHHHHHHhccCCCCC
Confidence 6666777777666666654
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.24 E-value=3.6e-10 Score=119.44 Aligned_cols=134 Identities=21% Similarity=0.280 Sum_probs=99.4
Q ss_pred CCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEE
Q 014666 160 GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239 (420)
Q Consensus 160 g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Li 239 (420)
|| .|+..|.....-+..|++.-+.||||.|||.--++..+- + ...+.+++|
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~-~---------------------------a~kgkr~yi 130 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY-L---------------------------AKKGKRVYI 130 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH-H---------------------------HhcCCeEEE
Confidence 66 899999999999999999999999999999765544443 0 224678999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCC-Cceeccc-CCCChHHHH----HHhcCCCcEEEeChhHHHhchhcCcccCCCceEEE
Q 014666 240 LCTTEESADQGFHMAKFISHCAR-LDSSMEN-GGVSSKALE----DVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313 (420)
Q Consensus 240 l~PtreLa~Qi~~~~~~l~~~~~-i~~~~~~-gg~~~~~~~----~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 313 (420)
|+||+.|+.|++..+..++...+ ..+.+++ +..+..+.. +..+.+.||+|+|..-|...+.. +.--++++++
T Consensus 131 i~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfif 208 (1187)
T COG1110 131 IVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIF 208 (1187)
T ss_pred EecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEE
Confidence 99999999999999999987665 4444433 333333322 22345699999999988665542 1113588999
Q ss_pred ecCcchhhccC
Q 014666 314 LDEADTLFDRG 324 (420)
Q Consensus 314 lDEaD~~l~~~ 324 (420)
+|++|.+|..+
T Consensus 209 VDDVDA~Lkas 219 (1187)
T COG1110 209 VDDVDAILKAS 219 (1187)
T ss_pred EccHHHHHhcc
Confidence 99999987543
No 109
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.21 E-value=2.4e-10 Score=123.35 Aligned_cols=190 Identities=13% Similarity=0.067 Sum_probs=144.0
Q ss_pred CHHHHHHH-HHCCCCCCcHHHHhhHHHHhcC------CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHh
Q 014666 149 KAEMIKAV-EKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQML 221 (420)
Q Consensus 149 ~~~l~~~l-~~~g~~~pt~iQ~~~i~~i~~g------~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l 221 (420)
+......+ ..++| .-|+=|..||..+.+. +|=|+||--|-|||-+.+-++.-.
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA------------------- 639 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA------------------- 639 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHH-------------------
Confidence 44444443 44677 4699999999988742 699999999999999977766552
Q ss_pred hhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHh
Q 014666 222 RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQ 297 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~ 297 (420)
...|.+|.|||||.-||.|-|+.|+.-.+..++++..+.--.+..++...+ ....||||||.--|-
T Consensus 640 ---------V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~- 709 (1139)
T COG1197 640 ---------VMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLS- 709 (1139)
T ss_pred ---------hcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhC-
Confidence 225789999999999999999999998888899998887777666665544 345899999986553
Q ss_pred chhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccC
Q 014666 298 HIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 377 (420)
Q Consensus 298 ~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~ 377 (420)
..+.+.++.+|||||=|++. -...+.+..+- .++=++-+|||.-+...++.=.=+++...+..
T Consensus 710 ----kdv~FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr------------~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T 772 (1139)
T COG1197 710 ----KDVKFKDLGLLIIDEEQRFG-VKHKEKLKELR------------ANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT 772 (1139)
T ss_pred ----CCcEEecCCeEEEechhhcC-ccHHHHHHHHh------------ccCcEEEeeCCCCcchHHHHHhcchhhhhccC
Confidence 34568999999999999874 33344444433 36779999999877777777777788877766
Q ss_pred CCeeeeee
Q 014666 378 GKVTAMLL 385 (420)
Q Consensus 378 ~~~~~~~~ 385 (420)
+...++.+
T Consensus 773 PP~~R~pV 780 (1139)
T COG1197 773 PPEDRLPV 780 (1139)
T ss_pred CCCCCcce
Confidence 65555543
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.14 E-value=4.4e-10 Score=119.86 Aligned_cols=168 Identities=15% Similarity=0.147 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHCCC----------CCCcHHHHhhHHHHh----c------CCcEEEEccCCCCchhHhHHHHHHHhhhh
Q 014666 147 GLKAEMIKAVEKMGL----------FVPSEIQCVGIPAVL----N------GKSVVLSSGSGSGRTLAYLLPLVQVYSQL 206 (420)
Q Consensus 147 ~l~~~l~~~l~~~g~----------~~pt~iQ~~~i~~i~----~------g~dvl~~a~TGsGKTla~~lp~l~~i~~~ 206 (420)
.=++.++..+..+=+ ..+...|..++..+. . .+..++..+||||||++.+..+.. +
T Consensus 212 ~~~~~ll~~i~~~~~~~~~~~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~-l--- 287 (667)
T TIGR00348 212 LKKERLLDFIRNFIIFDKDTGLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARK-A--- 287 (667)
T ss_pred cCHHHHHHHHHheEEEECCCCceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHH-H---
Confidence 345566666654211 236778988887642 2 257999999999999886655543 1
Q ss_pred hhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhc-CCC
Q 014666 207 DEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN-API 285 (420)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~-~~~ 285 (420)
++ ....+++|||+|+.+|..|....+..+... +..+..+.......+. ...
T Consensus 288 --------------~~--------~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~------~~~~~~s~~~L~~~l~~~~~ 339 (667)
T TIGR00348 288 --------------LE--------LLKNPKVFFVVDRRELDYQLMKEFQSLQKD------CAERIESIAELKRLLEKDDG 339 (667)
T ss_pred --------------Hh--------hcCCCeEEEEECcHHHHHHHHHHHHhhCCC------CCcccCCHHHHHHHHhCCCC
Confidence 10 124678999999999999999999887531 1111112222223333 346
Q ss_pred cEEEeChhHHHhchhcC--cccCCCc-eEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 286 GMLIATPSEVLQHIEDR--NVSCDDI-RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 286 ~IlV~TP~~L~~~l~~~--~~~l~~l-~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
.|+|+|...|...+... .+...+- -+||+||||+.....+. ..+...++ +...++||||.-
T Consensus 340 ~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~---~~l~~~~p---------~a~~lGfTaTP~ 403 (667)
T TIGR00348 340 GIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA---KNLKKALK---------NASFFGFTGTPI 403 (667)
T ss_pred CEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH---HHHHhhCC---------CCcEEEEeCCCc
Confidence 89999999998654331 1111111 28999999987422222 22224454 568999999985
No 111
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.11 E-value=5.8e-10 Score=120.13 Aligned_cols=182 Identities=18% Similarity=0.200 Sum_probs=121.2
Q ss_pred CCcHHHHhhHHHHhc---CC-cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 163 VPSEIQCVGIPAVLN---GK-SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~---g~-dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
..++.|..++..+.. .. .+++.||||+|||++.+++++..+... .....+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~------------------------~~~~~r~i 250 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK------------------------IKLKSRVI 250 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc------------------------ccccceEE
Confidence 448899999987764 34 799999999999999999998732110 12567899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH-----h---------cCCCcEEEeChhHHHhchhcC-c
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV-----S---------NAPIGMLIATPSEVLQHIEDR-N 303 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~-----l---------~~~~~IlV~TP~~L~~~l~~~-~ 303 (420)
++.|++.++.+++..++......++......|.....-.... . .....+.++||-.+....... .
T Consensus 251 ~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (733)
T COG1203 251 YVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFK 330 (733)
T ss_pred EEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccc
Confidence 999999999999999998766544433322332221110000 0 011345566665555532221 1
Q ss_pred cc-C--CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 304 VS-C--DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 304 ~~-l--~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
.. + =....+||||+|.+-+......+..++..+.. .+..+|++|||+|+.+.+.+...+..-..+
T Consensus 331 ~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~-------~g~~ill~SATlP~~~~~~l~~~~~~~~~~ 398 (733)
T COG1203 331 FEFLALLLTSLVILDEVHLYADETMLAALLALLEALAE-------AGVPVLLMSATLPPFLKEKLKKALGKGREV 398 (733)
T ss_pred hHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHh-------CCCCEEEEecCCCHHHHHHHHHHHhcccce
Confidence 11 1 12478999999988765456667777777664 478999999999999999888777765443
No 112
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.04 E-value=2.2e-09 Score=103.08 Aligned_cols=44 Identities=27% Similarity=0.237 Sum_probs=36.8
Q ss_pred CCCCCcHHHHhh----HHHHhcCCcEEEEccCCCCchhHhHHHHHHHhh
Q 014666 160 GLFVPSEIQCVG----IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYS 204 (420)
Q Consensus 160 g~~~pt~iQ~~~----i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~ 204 (420)
-|. |+|.|... +..+..|.++++.||||+|||++|++|++.++.
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~ 53 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLR 53 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHH
Confidence 454 69999994 455678999999999999999999999997553
No 113
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.04 E-value=2.2e-09 Score=103.08 Aligned_cols=44 Identities=27% Similarity=0.237 Sum_probs=36.8
Q ss_pred CCCCCcHHHHhh----HHHHhcCCcEEEEccCCCCchhHhHHHHHHHhh
Q 014666 160 GLFVPSEIQCVG----IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYS 204 (420)
Q Consensus 160 g~~~pt~iQ~~~----i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~ 204 (420)
-|. |+|.|... +..+..|.++++.||||+|||++|++|++.++.
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~ 53 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLR 53 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHH
Confidence 454 69999994 455678999999999999999999999997553
No 114
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=8.1e-10 Score=117.55 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=101.9
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|. .|+++|...--.+..| -|....||+|||++..+|++-.. ..|..+-
T Consensus 79 lGm-~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~a----------------------------l~G~~Vh 127 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNA----------------------------LSGKGVH 127 (913)
T ss_pred hCC-CcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHH----------------------------HcCCCEE
Confidence 565 7899998765555544 58899999999999999997522 2566799
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcC------cccCCCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~ 311 (420)
|++||.-||.|=+..+..+..++|++++++.++........... ++|++||..-| .++|+.. ......+.+
T Consensus 128 vvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~ 205 (913)
T PRK13103 128 VVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNF 205 (913)
T ss_pred EEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccce
Confidence 99999999999999999999999999999988877655444333 89999999986 3333322 112477999
Q ss_pred EEecCcchhh
Q 014666 312 VVLDEADTLF 321 (420)
Q Consensus 312 lVlDEaD~~l 321 (420)
.||||+|.+|
T Consensus 206 aIVDEvDsiL 215 (913)
T PRK13103 206 AVIDEVDSIL 215 (913)
T ss_pred eEechhhhee
Confidence 9999999886
No 115
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.03 E-value=2.1e-09 Score=118.65 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=52.1
Q ss_pred CCCCCcHHHHhhHHH----HhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCC
Q 014666 160 GLFVPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235 (420)
Q Consensus 160 g~~~pt~iQ~~~i~~----i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (420)
|| .+.|-|.+.... +.++..+++.|+||+|||++|++|++.+. ...+.
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a---------------------------~~~~~ 306 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFA---------------------------KKKEE 306 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHh---------------------------hccCC
Confidence 56 689999986554 45788999999999999999999998622 11346
Q ss_pred eEEEEcCcHHHHHHHHH
Q 014666 236 RAIVLCTTEESADQGFH 252 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~ 252 (420)
++||-++|+.|..|+..
T Consensus 307 ~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 307 PVVISTYTIQLQQQLLE 323 (928)
T ss_pred eEEEEcCCHHHHHHHHH
Confidence 79999999999999755
No 116
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.97 E-value=1.1e-08 Score=96.74 Aligned_cols=151 Identities=14% Similarity=0.107 Sum_probs=109.6
Q ss_pred CCcHHHHhhHHH----HhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 163 VPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 163 ~pt~iQ~~~i~~----i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.+|+.|..+-.. +.+..|.|+.|-||+|||.+. ++.++..+ ..|.++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al---------------------------~~G~~vc 148 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQAL---------------------------NQGGRVC 148 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHH---------------------------hcCCeEE
Confidence 689999888554 456789999999999999873 33333111 2577899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcc
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD 318 (420)
|..|....|..++..++.-.. +..+.+++|+.....+ ..++|+|...|+.+- ..++++||||+|
T Consensus 149 iASPRvDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVD 212 (441)
T COG4098 149 IASPRVDVCLELYPRLKQAFS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVD 212 (441)
T ss_pred EecCcccchHHHHHHHHHhhc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccc
Confidence 999999999999998887543 5667888988765422 579999999988764 447899999999
Q ss_pred hhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHH
Q 014666 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 365 (420)
Q Consensus 319 ~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~ 365 (420)
.+-- .-...+...++.-.. ...-+|.+|||.+..+..-+
T Consensus 213 AFP~-~~d~~L~~Av~~ark-------~~g~~IylTATp~k~l~r~~ 251 (441)
T COG4098 213 AFPF-SDDQSLQYAVKKARK-------KEGATIYLTATPTKKLERKI 251 (441)
T ss_pred cccc-cCCHHHHHHHHHhhc-------ccCceEEEecCChHHHHHHh
Confidence 8741 123344444443322 35679999999998776543
No 117
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.96 E-value=6.2e-09 Score=87.77 Aligned_cols=138 Identities=17% Similarity=0.124 Sum_probs=79.6
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
+|+=-++...+|+|||--.+.-++..-+ ..+.++|||.|||.++..+.+.++.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i---------------------------~~~~rvLvL~PTRvva~em~~aL~~ 55 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI---------------------------KRRLRVLVLAPTRVVAEEMYEALKG 55 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH---------------------------HTT--EEEEESSHHHHHHHHHHTTT
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH---------------------------HccCeEEEecccHHHHHHHHHHHhc
Confidence 3455678889999999876665554111 1456799999999999998887765
Q ss_pred hhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHc
Q 014666 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336 (420)
Q Consensus 257 l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l 336 (420)
. .+++....-+. ....+.-|=|.|.+.+...+.+ ...+.+.+++|+||+|.+ |..-. ...-.+..+
T Consensus 56 ~----~~~~~t~~~~~-------~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sI-A~rg~l~~~ 121 (148)
T PF07652_consen 56 L----PVRFHTNARMR-------THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSI-AARGYLREL 121 (148)
T ss_dssp S----SEEEESTTSS-----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHH-HHHHHHHHH
T ss_pred C----CcccCceeeec-------cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHH-hhheeHHHh
Confidence 4 22222111111 1123345778899988887766 445788999999999975 33211 112223222
Q ss_pred hhhhcccCCCCceEEEEeecccchH
Q 014666 337 KDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 337 ~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
... ....+|++|||.|...
T Consensus 122 ~~~------g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 122 AES------GEAKVIFMTATPPGSE 140 (148)
T ss_dssp HHT------TS-EEEEEESS-TT--
T ss_pred hhc------cCeeEEEEeCCCCCCC
Confidence 221 2468999999999754
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=7e-09 Score=108.10 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=103.8
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|+ .|+++|....-.++.|+ |....||+|||++..+|++... ..|..+-
T Consensus 75 lg~-r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~A----------------------------L~G~~Vh 123 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYA----------------------------LQGRRVH 123 (764)
T ss_pred cCC-CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHH----------------------------HcCCCeE
Confidence 566 79999999998888874 7799999999999999987632 2466799
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHH-hchhcC------cccCCCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL-QHIEDR------NVSCDDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~~l~~~------~~~l~~l~~ 311 (420)
|++||..||.|=+..+..+...+|++++++.++.......... .|||+.||..-|- ++|+.. ......+.+
T Consensus 124 vvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~f 201 (764)
T PRK12326 124 VITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDV 201 (764)
T ss_pred EEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccce
Confidence 9999999999999999999999999999999887765443333 5899999998763 333322 122456889
Q ss_pred EEecCcchhh
Q 014666 312 VVLDEADTLF 321 (420)
Q Consensus 312 lVlDEaD~~l 321 (420)
.||||+|.||
T Consensus 202 aIVDEvDSiL 211 (764)
T PRK12326 202 AIIDEADSVL 211 (764)
T ss_pred eeecchhhhe
Confidence 9999999876
No 119
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=7.6e-09 Score=109.79 Aligned_cols=130 Identities=18% Similarity=0.255 Sum_probs=104.1
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|+ .|+++|....-++..|+ |....||+|||++..+|++... ..|..+-
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~a----------------------------l~G~~v~ 125 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNA----------------------------LTGKGVH 125 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHH----------------------------HcCCCeE
Confidence 565 79999999887887887 9999999999999999887632 2466799
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHH-hchhcC------cccCCCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL-QHIEDR------NVSCDDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~~l~~~------~~~l~~l~~ 311 (420)
|++||.-||.|=+..+..+...+|++++++.|+......... ..+||+.||..-|- ++|+.. ......+.+
T Consensus 126 vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~ 203 (796)
T PRK12906 126 VVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNY 203 (796)
T ss_pred EEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcce
Confidence 999999999999999999999999999999988776654333 35899999998763 344332 112356889
Q ss_pred EEecCcchhh
Q 014666 312 VVLDEADTLF 321 (420)
Q Consensus 312 lVlDEaD~~l 321 (420)
.||||+|.||
T Consensus 204 aIvDEvDSiL 213 (796)
T PRK12906 204 AIVDEVDSIL 213 (796)
T ss_pred eeeccchhee
Confidence 9999999876
No 120
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.88 E-value=4.9e-08 Score=103.18 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=114.7
Q ss_pred CCcHHHHhhHHHHhcC----CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 163 VPSEIQCVGIPAVLNG----KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g----~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.+++-|+.++..+... .-.++.+.||||||.+|+=.+-..+ . .|.++|
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L------------------~----------~GkqvL 249 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL------------------A----------QGKQVL 249 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH------------------H----------cCCEEE
Confidence 5677899999988655 6789999999999999987776532 1 456799
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCceEEEe
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVl 314 (420)
||+|-..|-.|+...++... +.++..++++.+..+....| .....|||||-..| ...+.++.++||
T Consensus 250 vLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIv 319 (730)
T COG1198 250 VLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIV 319 (730)
T ss_pred EEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEE
Confidence 99999999999888887754 47788888887765544443 45689999998776 345789999999
Q ss_pred cCcchhh---ccC---CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHH
Q 014666 315 DEADTLF---DRG---FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 365 (420)
Q Consensus 315 DEaD~~l---~~~---~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~ 365 (420)
||=|--- +.+ +..++-...... .++++|+-|||.+-+-...+
T Consensus 320 DEEHD~sYKq~~~prYhARdvA~~Ra~~---------~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 320 DEEHDSSYKQEDGPRYHARDVAVLRAKK---------ENAPVVLGSATPSLESYANA 367 (730)
T ss_pred eccccccccCCcCCCcCHHHHHHHHHHH---------hCCCEEEecCCCCHHHHHhh
Confidence 9998432 112 233343334333 37899999999885444333
No 121
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.88 E-value=1.5e-08 Score=97.50 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=86.8
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
..+.++++..+|+|||+..+.-+.. +... . .......+|||||. .+..|....+..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~-l~~~-----------------~-----~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISY-LKNE-----------------F-----PQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHH-HHHC-----------------C-----TTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchhhhhhhhhh-hhhc-----------------c-----ccccccceeEeecc-chhhhhhhhhcc
Confidence 4467999999999999876554432 1110 0 00111249999999 777888888888
Q ss_pred hhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhc---CcccCCCceEEEecCcchhhccCCHHHHHHHH
Q 014666 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED---RNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333 (420)
Q Consensus 257 l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~---~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il 333 (420)
+.....+++....|+..............+|+|+|...+...... ..+.--+.++||+||+|.+ .+........+
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~--k~~~s~~~~~l 157 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRL--KNKDSKRYKAL 157 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGG--TTTTSHHHHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccc--ccccccccccc
Confidence 876545667666665512222222344578999999999811110 1111234889999999998 33344444455
Q ss_pred HHchhhhcccCCCCceEEEEeecc-cchHHH
Q 014666 334 NPLKDSALKSNGQGFQTILVTAAI-AEMLGE 363 (420)
Q Consensus 334 ~~l~~~~~~~~~~~~Q~v~~SATl-~~~v~~ 363 (420)
..+. ....+++|||. ++.+.+
T Consensus 158 ~~l~---------~~~~~lLSgTP~~n~~~d 179 (299)
T PF00176_consen 158 RKLR---------ARYRWLLSGTPIQNSLED 179 (299)
T ss_dssp HCCC---------ECEEEEE-SS-SSSGSHH
T ss_pred cccc---------cceEEeeccccccccccc
Confidence 4454 45789999995 334343
No 122
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.86 E-value=4.2e-08 Score=105.03 Aligned_cols=166 Identities=15% Similarity=0.126 Sum_probs=109.4
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
..+..+...+.++.+.+.+++.|.||+|||.-.---+++.... .....++++--|
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~-------------------------~~~~~~IicTQP 227 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIE-------------------------SGAACNIICTQP 227 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHh-------------------------cCCCCeEEecCC
Confidence 4566778888899999999999999999998755555552211 112345777779
Q ss_pred cHHHHHHHHHHHH-HhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchh-
Q 014666 243 TEESADQGFHMAK-FISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL- 320 (420)
Q Consensus 243 treLa~Qi~~~~~-~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~- 320 (420)
.|--|..+++... ..+...|-.|+.-++.... ......+++||-|.|++.+..+ ..+..+.++|+||+|.-
T Consensus 228 RRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~ 300 (924)
T KOG0920|consen 228 RRISAISVAERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERS 300 (924)
T ss_pred chHHHHHHHHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEcc
Confidence 8888887776543 3333344334333332221 1223679999999999999874 44789999999999943
Q ss_pred hccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc
Q 014666 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 321 l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
++..|.--+...+-.. +++.++|+||||+. .+.++.|+..
T Consensus 301 i~~DflLi~lk~lL~~--------~p~LkvILMSAT~d---ae~fs~YF~~ 340 (924)
T KOG0920|consen 301 INTDFLLILLKDLLPR--------NPDLKVILMSATLD---AELFSDYFGG 340 (924)
T ss_pred CCcccHHHHHHHHhhh--------CCCceEEEeeeecc---hHHHHHHhCC
Confidence 3334433332222222 25899999999999 4455666664
No 123
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.80 E-value=1.9e-08 Score=106.81 Aligned_cols=130 Identities=20% Similarity=0.243 Sum_probs=100.3
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|+ .|+++|....-++. +.-|+...||.|||+++.+|++-. ...|..|-
T Consensus 73 lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~----------------------------aL~G~~Vh 121 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLN----------------------------ALTGKGVH 121 (870)
T ss_pred hCC-CCCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHH----------------------------HhcCCceE
Confidence 576 58999988765554 457999999999999999999541 11456699
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHH-hchhcC------cccCCCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL-QHIEDR------NVSCDDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~~l~~~------~~~l~~l~~ 311 (420)
||+++..||.+-+..+..+..++|+.|+++.++.+...... ...|||+.||..-|- ++|+.. ......+.+
T Consensus 122 VvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~f 199 (870)
T CHL00122 122 IVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNY 199 (870)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccce
Confidence 99999999999999999999999999999988887754333 345899999997553 333221 123466899
Q ss_pred EEecCcchhh
Q 014666 312 VVLDEADTLF 321 (420)
Q Consensus 312 lVlDEaD~~l 321 (420)
.||||+|.||
T Consensus 200 aIVDEvDSiL 209 (870)
T CHL00122 200 CIIDEVDSIL 209 (870)
T ss_pred eeeecchhhe
Confidence 9999999876
No 124
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.79 E-value=6.9e-08 Score=90.86 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=97.2
Q ss_pred HCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
..|+ .|+++|..++-.+..|+ |++-.||-|||++..+|++-.. ..|..+
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~A----------------------------L~G~~V 121 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNA----------------------------LQGKGV 121 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHH----------------------------TTSS-E
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHH----------------------------HhcCCc
Confidence 3565 79999999998887777 9999999999999888876522 145669
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHh-chhc----Ccc--cCCCce
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ-HIED----RNV--SCDDIR 310 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~-~l~~----~~~--~l~~l~ 310 (420)
=|++.+..||.+=+..+..+...+|+.+++..++......... ..++|+.||...+.- +|+. ... ....+.
T Consensus 122 ~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~ 199 (266)
T PF07517_consen 122 HVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFD 199 (266)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSS
T ss_pred EEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCC
Confidence 9999999999999999999999999999999998876443322 247899999998743 3332 111 246799
Q ss_pred EEEecCcchhh
Q 014666 311 YVVLDEADTLF 321 (420)
Q Consensus 311 ~lVlDEaD~~l 321 (420)
++||||||.||
T Consensus 200 ~~ivDEvDs~L 210 (266)
T PF07517_consen 200 FAIVDEVDSIL 210 (266)
T ss_dssp EEEECTHHHHT
T ss_pred EEEEeccceEE
Confidence 99999999876
No 125
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.79 E-value=1.1e-08 Score=109.82 Aligned_cols=151 Identities=20% Similarity=0.253 Sum_probs=116.1
Q ss_pred CCcHHHHhhHHHHh-cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 163 VPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~-~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
...|+|.++++.+. .+.+++++||+|||||++.-+.++. .....++++++
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----------------------------~~~~~~~vyi~ 1193 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----------------------------PDTIGRAVYIA 1193 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----------------------------CccceEEEEec
Confidence 44889999999766 4667999999999999998888875 23456899999
Q ss_pred CcHHHHHHHHHHH-HHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchh
Q 014666 242 TTEESADQGFHMA-KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 242 PtreLa~Qi~~~~-~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~ 320 (420)
|..+.+..+++.+ .++....|..+..+.|..+.+.. +....+|+|+||.+ |++++ +.+.+++.|.||+|.+
T Consensus 1194 p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~-~d~lq----~iQ~v~l~i~d~lh~i 1265 (1674)
T KOG0951|consen 1194 PLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLK---LLQKGQVIISTPEQ-WDLLQ----SIQQVDLFIVDELHLI 1265 (1674)
T ss_pred chHHHHHHHHHHHHHhhccccCceEEecCCccccchH---HhhhcceEEechhH-HHHHh----hhhhcceEeeehhhhh
Confidence 9999998877766 45677788888888887766532 22336899999998 66664 5688999999999977
Q ss_pred hccCCHHH------HHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 321 FDRGFGPE------ISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 321 l~~~~~~~------l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
.+. ++.- +..|...+-+ .++++.+|..+.+
T Consensus 1266 gg~-~g~v~evi~S~r~ia~q~~k--------~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1266 GGV-YGAVYEVICSMRYIASQLEK--------KIRVVALSSSLAN 1301 (1674)
T ss_pred ccc-CCceEEEEeeHHHHHHHHHh--------heeEEEeehhhcc
Confidence 522 2222 5566666653 7899999999876
No 126
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=3.9e-08 Score=104.42 Aligned_cols=130 Identities=19% Similarity=0.247 Sum_probs=102.3
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|. .|+++|...--++..| -|....||-|||+++.+|++-. ...|..+-
T Consensus 82 lG~-r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpayln----------------------------AL~GkgVh 130 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLN----------------------------ALTGKGVH 130 (939)
T ss_pred hCC-CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHH----------------------------hhcCCCeE
Confidence 465 6899998776666554 5889999999999999998752 12456699
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-----Hhchhc--CcccCCCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-----LQHIED--RNVSCDDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-----~~~l~~--~~~~l~~l~~ 311 (420)
||+++..||.+=...+..+..++|+.|+++.++..... +.....|||+.||+..| .+.+.. .......+.+
T Consensus 131 VVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~f 208 (939)
T PRK12902 131 VVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNY 208 (939)
T ss_pred EEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccce
Confidence 99999999999999999999999999999988776543 33455799999999987 444432 1223567899
Q ss_pred EEecCcchhh
Q 014666 312 VVLDEADTLF 321 (420)
Q Consensus 312 lVlDEaD~~l 321 (420)
.||||+|.||
T Consensus 209 aIVDEvDSIL 218 (939)
T PRK12902 209 CVIDEVDSIL 218 (939)
T ss_pred EEEeccccee
Confidence 9999999876
No 127
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.75 E-value=7.4e-08 Score=103.31 Aligned_cols=64 Identities=27% Similarity=0.431 Sum_probs=48.9
Q ss_pred CCCCCcHHHHhhHHHHh----c-----CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCC
Q 014666 160 GLFVPSEIQCVGIPAVL----N-----GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPM 230 (420)
Q Consensus 160 g~~~pt~iQ~~~i~~i~----~-----g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 230 (420)
|| .+.+-|.+....+. . ++.+++.|+||+|||++|++|++-+..+
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~------------------------- 76 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA------------------------- 76 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-------------------------
Confidence 66 57899998665543 3 3679999999999999999999863211
Q ss_pred CCCCCeEEEEcCcHHHHHHHH
Q 014666 231 KPMHPRAIVLCTTEESADQGF 251 (420)
Q Consensus 231 ~~~~~~~Lil~PtreLa~Qi~ 251 (420)
.+.++||-+.|..|-.|+.
T Consensus 77 --~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 77 --EKKKLVISTATVALQEQLV 95 (697)
T ss_pred --cCCeEEEEcCCHHHHHHHH
Confidence 3456888889999888864
No 128
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.73 E-value=2.8e-08 Score=103.73 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=107.9
Q ss_pred CCcHHHHhhHHHH----hcCC-cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 163 VPSEIQCVGIPAV----LNGK-SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 163 ~pt~iQ~~~i~~i----~~g~-dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.|...|..||..+ .+|+ -+|++..||+|||.+ ++.++..|++. ..-.++
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~-------------------------~~~KRV 218 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKS-------------------------GWVKRV 218 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhc-------------------------chhhee
Confidence 5788999998654 4554 399999999999987 45555544331 234579
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC-----cccCCCceEE
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR-----NVSCDDIRYV 312 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~-----~~~l~~l~~l 312 (420)
|+|+-++.|+.|.+..+..+.-... .+..+.+.. ....++|.|+|-..+...+... .+....++++
T Consensus 219 LFLaDR~~Lv~QA~~af~~~~P~~~-~~n~i~~~~--------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlI 289 (875)
T COG4096 219 LFLADRNALVDQAYGAFEDFLPFGT-KMNKIEDKK--------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLI 289 (875)
T ss_pred eEEechHHHHHHHHHHHHHhCCCcc-ceeeeeccc--------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEE
Confidence 9999999999999888777654322 222222211 1124799999999998887643 3456679999
Q ss_pred EecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHh-hcc
Q 014666 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM-ECL 372 (420)
Q Consensus 313 VlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~-~~~ 372 (420)
||||||+=. ......|+.++.. -+++++||+...+..---.|+ .+|
T Consensus 290 vIDEaHRgi----~~~~~~I~dYFdA----------~~~gLTATP~~~~d~~T~~~F~g~P 336 (875)
T COG4096 290 VIDEAHRGI----YSEWSSILDYFDA----------ATQGLTATPKETIDRSTYGFFNGEP 336 (875)
T ss_pred EechhhhhH----HhhhHHHHHHHHH----------HHHhhccCcccccccccccccCCCc
Confidence 999999654 4444577777753 233448998775554444444 444
No 129
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.73 E-value=2.1e-07 Score=102.30 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=103.1
Q ss_pred CCcHHHHhhHHHHh----cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~----~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.+.++|...+..+. .|.+.|++-..|.|||+..+. ++..+... ......+|
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~------------------------~~~~gp~L 223 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEY------------------------RGITGPHM 223 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHh------------------------cCCCCCEE
Confidence 67899999988654 678899999999999987433 33321110 11223589
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH---HhcCCCcEEEeChhHHHhchhcCcccCCCceEEEec
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~---~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 315 (420)
||||. .+..+....+..++. .+++..++|......... ......+|+|+|.+.+..... .+.--...+||||
T Consensus 224 IVvP~-SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvD 298 (1033)
T PLN03142 224 VVAPK-STLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIID 298 (1033)
T ss_pred EEeCh-HHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEc
Confidence 99996 455677777777653 456666666443222111 123457999999998765432 2222345799999
Q ss_pred CcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc-cchHHHHH
Q 014666 316 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AEMLGEQL 365 (420)
Q Consensus 316 EaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl-~~~v~~~~ 365 (420)
|||++- .....+..++..+. ....+++|+|. .+.+.++.
T Consensus 299 EAHrIK--N~~Sklskalr~L~---------a~~RLLLTGTPlqNnl~ELw 338 (1033)
T PLN03142 299 EAHRIK--NENSLLSKTMRLFS---------TNYRLLITGTPLQNNLHELW 338 (1033)
T ss_pred CccccC--CHHHHHHHHHHHhh---------cCcEEEEecCCCCCCHHHHH
Confidence 999984 33455666666664 23468899996 44555543
No 130
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.72 E-value=1.6e-07 Score=95.98 Aligned_cols=163 Identities=13% Similarity=0.087 Sum_probs=98.3
Q ss_pred cHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcH
Q 014666 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTE 244 (420)
Q Consensus 165 t~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~Ptr 244 (420)
+..-.+.+..+.+++-+|+.|.||||||.-.---+.+. +.. ...++.+.-|.|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~ea--------------------------G~~-~~g~I~~TQPRR 105 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEA--------------------------GFA-SSGKIACTQPRR 105 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhc--------------------------ccc-cCCcEEeecCch
Confidence 34445567778888999999999999997633323220 001 122356666777
Q ss_pred HHHHHHHHH-HHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhcc
Q 014666 245 ESADQGFHM-AKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR 323 (420)
Q Consensus 245 eLa~Qi~~~-~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~ 323 (420)
--|..+... ....+...|-.|+..+--. ..-.....|...|-|.|++.+..+.. |+...++||||||.--
T Consensus 106 VAavslA~RVAeE~~~~lG~~VGY~IRFe------d~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERs-- 176 (674)
T KOG0922|consen 106 VAAVSLAKRVAEEMGCQLGEEVGYTIRFE------DSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERS-- 176 (674)
T ss_pred HHHHHHHHHHHHHhCCCcCceeeeEEEec------ccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhh--
Confidence 766665443 3333333333332221100 11122357999999999998876655 8999999999999421
Q ss_pred CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc
Q 014666 324 GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 324 ~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
-.-+-+.-+++.+-. .+.+..+|++|||+.. +.++.|+.+
T Consensus 177 l~TDiLlGlLKki~~-----~R~~LklIimSATlda---~kfS~yF~~ 216 (674)
T KOG0922|consen 177 LHTDILLGLLKKILK-----KRPDLKLIIMSATLDA---EKFSEYFNN 216 (674)
T ss_pred hHHHHHHHHHHHHHh-----cCCCceEEEEeeeecH---HHHHHHhcC
Confidence 022233333433322 1257899999999994 445667776
No 131
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.62 E-value=2.1e-07 Score=100.45 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=50.9
Q ss_pred CcEEEeChhHHHhchh--c-CcccCC--C--ceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 285 IGMLIATPSEVLQHIE--D-RNVSCD--D--IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 285 ~~IlV~TP~~L~~~l~--~-~~~~l~--~--l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
..|+|||+..++.... + ++..+. . -+.|||||+|.+- ......|..++..+.. -+..++++||||
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD-~~~~~~L~rlL~w~~~-------lG~~VlLmSATL 634 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE-PEDLPALLRLVQLAGL-------LGSRVLLSSATL 634 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC-HHHHHHHHHHHHHHHH-------cCCCEEEEeCCC
Confidence 3699999999988763 2 222211 1 3679999999763 3334455666654433 367999999999
Q ss_pred cchHHHH-HHHHh
Q 014666 358 AEMLGEQ-LSSLM 369 (420)
Q Consensus 358 ~~~v~~~-~~~~~ 369 (420)
|+.+... +..|.
T Consensus 635 P~~l~~~L~~Ay~ 647 (1110)
T TIGR02562 635 PPALVKTLFRAYE 647 (1110)
T ss_pred CHHHHHHHHHHHH
Confidence 9987664 44443
No 132
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.58 E-value=5.7e-07 Score=91.78 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=94.6
Q ss_pred CCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEE
Q 014666 160 GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239 (420)
Q Consensus 160 g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Li 239 (420)
.|-..+.++.+.+..|..++-||+.+.||||||.-..--+++ + +-. ....+-+
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~e----------------------d----GY~-~~GmIGc 405 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYE----------------------D----GYA-DNGMIGC 405 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHh----------------------c----ccc-cCCeeee
Confidence 455667888888889999999999999999999875544444 0 001 1122334
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcch
Q 014666 240 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319 (420)
Q Consensus 240 l~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~ 319 (420)
.-|.|.-|..+..... ...+...+.-+|- +.. ....-....-|-..|-|.|+.-.-... .|.+..++|+||||.
T Consensus 406 TQPRRvAAiSVAkrVa---~EM~~~lG~~VGY-sIR-FEdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHE 479 (1042)
T KOG0924|consen 406 TQPRRVAAISVAKRVA---EEMGVTLGDTVGY-SIR-FEDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHE 479 (1042)
T ss_pred cCchHHHHHHHHHHHH---HHhCCccccccce-EEE-eeecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhh
Confidence 4577877776655433 2223332222221 110 001111234577889998876543322 367899999999994
Q ss_pred hhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 320 ~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
-- -.-+-+.-|+...-.. +.+..+|+.||||..
T Consensus 480 Rs--lNtDilfGllk~~lar-----RrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 480 RS--LNTDILFGLLKKVLAR-----RRDLKLIVTSATMDA 512 (1042)
T ss_pred cc--cchHHHHHHHHHHHHh-----hccceEEEeeccccH
Confidence 31 1233333344333221 248999999999984
No 133
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.50 E-value=2.1e-06 Score=84.75 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=109.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
+..|...+.++.-.+.|+..---..+..+...+..+.+++-+++.+.||||||.-.--.++...+.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~-------------- 89 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS-------------- 89 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh--------------
Confidence 667999999999999998865444455555566678889999999999999998633333321100
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhch
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
....+.-.-|.|.-|.++.... +...++..+--+|-.-..+.. .....-.-.+|.|.|++-.
T Consensus 90 -------------~~~~v~CTQprrvaamsva~RV---adEMDv~lG~EVGysIrfEdC--~~~~T~Lky~tDgmLlrEa 151 (699)
T KOG0925|consen 90 -------------HLTGVACTQPRRVAAMSVAQRV---ADEMDVTLGEEVGYSIRFEDC--TSPNTLLKYCTDGMLLREA 151 (699)
T ss_pred -------------hccceeecCchHHHHHHHHHHH---HHHhccccchhcccccccccc--CChhHHHHHhcchHHHHHH
Confidence 0112444557777777655433 222233332222211110000 0000001134555555444
Q ss_pred hcCcccCCCceEEEecCcchh-hccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 300 EDRNVSCDDIRYVVLDEADTL-FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~-l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
.+..+ +.+..+||+||||.- +. -+-+..++...... +++..+|++|||+.. .-++.|..|+-.+.+.
T Consensus 152 ms~p~-l~~y~viiLDeahERtlA---TDiLmGllk~v~~~-----rpdLk~vvmSatl~a---~Kfq~yf~n~Pll~vp 219 (699)
T KOG0925|consen 152 MSDPL-LGRYGVIILDEAHERTLA---TDILMGLLKEVVRN-----RPDLKLVVMSATLDA---EKFQRYFGNAPLLAVP 219 (699)
T ss_pred hhCcc-cccccEEEechhhhhhHH---HHHHHHHHHHHHhh-----CCCceEEEeecccch---HHHHHHhCCCCeeecC
Confidence 43333 788999999999942 21 12223333332221 258999999999974 3356777776555443
No 134
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.49 E-value=9.1e-07 Score=94.93 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=53.5
Q ss_pred HHCCCCCCcHHHHhhHHH----HhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCC
Q 014666 157 EKMGLFVPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232 (420)
Q Consensus 157 ~~~g~~~pt~iQ~~~i~~----i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (420)
..+..-.|.+.|..++.. +..|+.+++.||||+|||++|++|++.+...
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~--------------------------- 61 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE--------------------------- 61 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH---------------------------
Confidence 334455899999998854 3356669999999999999999999984311
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHH
Q 014666 233 MHPRAIVLCTTEESADQGFHMAK 255 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~ 255 (420)
.+.+++|.++|+.|-.|+.+...
T Consensus 62 ~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 62 EGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred cCCcEEEECCCHHHHHHHHHhhc
Confidence 23568888888888777665443
No 135
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.46 E-value=1.9e-06 Score=94.47 Aligned_cols=165 Identities=15% Similarity=0.052 Sum_probs=96.6
Q ss_pred CCcHHHHhhHHHHhc--CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 163 VPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~--g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
.|.|+|..+...++. ...+|+.-..|.|||.-..+-+-..+. .....++|||
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~--------------------------~g~~~rvLIV 205 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL--------------------------TGRAERVLIL 205 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH--------------------------cCCCCcEEEE
Confidence 589999999876654 346899999999999887655543111 1123469999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH--HhcCCCcEEEeChhHHHhchhc-CcccCCCceEEEecCc
Q 014666 241 CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED--VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDEA 317 (420)
Q Consensus 241 ~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~--~l~~~~~IlV~TP~~L~~~l~~-~~~~l~~l~~lVlDEa 317 (420)
||+ .|+.|....+.... ++.+.++.++........ ..-...+++|+|.+.+...-.. ..+.-...++||||||
T Consensus 206 vP~-sL~~QW~~El~~kF---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEA 281 (956)
T PRK04914 206 VPE-TLQHQWLVEMLRRF---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEA 281 (956)
T ss_pred cCH-HHHHHHHHHHHHHh---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEech
Confidence 998 78888777664321 344443333221110000 0112357999999877643211 1122245789999999
Q ss_pred chhhcc-CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc-hHHHH
Q 014666 318 DTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE-MLGEQ 364 (420)
Q Consensus 318 D~~l~~-~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~-~v~~~ 364 (420)
|++-.. +........+..|.. ....++++|||.-. ...++
T Consensus 282 H~lk~~~~~~s~~y~~v~~La~-------~~~~~LLLTATP~q~~~~e~ 323 (956)
T PRK04914 282 HHLVWSEEAPSREYQVVEQLAE-------VIPGVLLLTATPEQLGQESH 323 (956)
T ss_pred hhhccCCCCcCHHHHHHHHHhh-------ccCCEEEEEcCcccCCcHHH
Confidence 998521 111112333443322 13468999999853 34433
No 136
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.45 E-value=7.2e-06 Score=83.77 Aligned_cols=165 Identities=12% Similarity=0.059 Sum_probs=97.6
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
-..++.-.+.+.++..++-+||.|.||||||.-.---+.+ .+....+.++-+.-
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~E--------------------------aGytk~gk~IgcTQ 317 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYE--------------------------AGYTKGGKKIGCTQ 317 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHh--------------------------cccccCCceEeecC
Confidence 3456666777888899999999999999999863222222 01122344566667
Q ss_pred CcHHHHHHHHHHH-HHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchh
Q 014666 242 TTEESADQGFHMA-KFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 242 PtreLa~Qi~~~~-~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~ 320 (420)
|.|--|..|.... +..+-.+|..|+. +..- ..--....-|=+.|.|.|+.-+... .+|.+..++||||||.-
T Consensus 318 PRRVAAmSVAaRVA~EMgvkLG~eVGY-----sIRF-EdcTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHER 390 (902)
T KOG0923|consen 318 PRRVAAMSVAARVAEEMGVKLGHEVGY-----SIRF-EDCTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHER 390 (902)
T ss_pred cchHHHHHHHHHHHHHhCcccccccce-----EEEe-ccccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhh
Confidence 8888777655433 3222222222211 1000 0001122346788999998877644 45899999999999942
Q ss_pred -hccC-CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc
Q 014666 321 -FDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 321 -l~~~-~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
|... ...-+..|.+.- ++..+++.|||+..+ -++.|+.+
T Consensus 391 TL~TDILfgLvKDIar~R---------pdLKllIsSAT~DAe---kFS~fFDd 431 (902)
T KOG0923|consen 391 TLHTDILFGLVKDIARFR---------PDLKLLISSATMDAE---KFSAFFDD 431 (902)
T ss_pred hhhhhHHHHHHHHHHhhC---------CcceEEeeccccCHH---HHHHhccC
Confidence 2111 122233333322 589999999999853 23445544
No 137
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=1.6e-05 Score=82.89 Aligned_cols=154 Identities=15% Similarity=0.092 Sum_probs=87.4
Q ss_pred hHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHH
Q 014666 171 GIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQG 250 (420)
Q Consensus 171 ~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi 250 (420)
...+|..+--+|+||.||||||.-.---+.+ . + +. ......+..+=|.-|.|--|..+
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYE----A---------G---f~------s~~~~~~gmIGITqPRRVAaiam 321 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYE----A---------G---FA------SEQSSSPGMIGITQPRRVAAIAM 321 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHH----c---------c---cC------CccCCCCCeeeecCchHHHHHHH
Confidence 3445566667999999999999863222222 0 0 00 00011222455666877776664
Q ss_pred HHH-HHHhhccCCCceec--ccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHH
Q 014666 251 FHM-AKFISHCARLDSSM--ENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP 327 (420)
Q Consensus 251 ~~~-~~~l~~~~~i~~~~--~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~ 327 (420)
... ...++. .+-.|.. -+.|. ......|.+.|.|.|+.-|.++.+ |.....+||||||.-. -+-+
T Consensus 322 AkRVa~EL~~-~~~eVsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERS--vnTD 389 (1172)
T KOG0926|consen 322 AKRVAFELGV-LGSEVSYQIRFDGT--------IGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERS--VNTD 389 (1172)
T ss_pred HHHHHHHhcc-CccceeEEEEeccc--------cCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhcc--chHH
Confidence 443 333333 2333322 22222 233467999999999999987755 7899999999999431 1222
Q ss_pred HHHHHHHHchhhhc-----ccCCCCceEEEEeeccc
Q 014666 328 EISKILNPLKDSAL-----KSNGQGFQTILVTAAIA 358 (420)
Q Consensus 328 ~l~~Il~~l~~~~~-----~~~~~~~Q~v~~SATl~ 358 (420)
-+..+|.++-.... ...-.....|+|||||-
T Consensus 390 ILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLR 425 (1172)
T KOG0926|consen 390 ILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLR 425 (1172)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEE
Confidence 22223222211111 12234688999999996
No 138
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.33 E-value=7.4e-06 Score=84.96 Aligned_cols=168 Identities=21% Similarity=0.247 Sum_probs=103.3
Q ss_pred CCcHHHHhhHHHHh----cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~----~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.+.++|.+-+..+. +|-+.|+.-..|-|||+- .|.++.++... . ...|| -|
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~------------------~-----~~~GP-fL 221 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGR------------------K-----GIPGP-FL 221 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHh------------------c-----CCCCC-eE
Confidence 57788888776543 688999999999999986 33333322110 0 11333 68
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHH--H-HhcCCCcEEEeChhHHHhchhcCcccCCCceEEEec
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE--D-VSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~--~-~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 315 (420)
|+||---|.+= .+.+..++. ++++.+++|........ . ......+|+|+|-+..+.- ...+.--.-+|||||
T Consensus 222 Vi~P~StL~NW-~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvID 296 (971)
T KOG0385|consen 222 VIAPKSTLDNW-MNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVID 296 (971)
T ss_pred EEeeHhhHHHH-HHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEec
Confidence 89998777543 344555443 67888888865432211 1 2234689999999876543 111222234799999
Q ss_pred CcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc-chHHHHHHHHhhcc
Q 014666 316 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA-EMLGEQLSSLMECL 372 (420)
Q Consensus 316 EaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~-~~v~~~~~~~~~~~ 372 (420)
|||++= .-..-+..+++.+. ..-.++++.|.- +++.++ ..+|+..
T Consensus 297 EaHRiK--N~~s~L~~~lr~f~---------~~nrLLlTGTPLQNNL~EL-WaLLnFl 342 (971)
T KOG0385|consen 297 EAHRIK--NEKSKLSKILREFK---------TDNRLLLTGTPLQNNLHEL-WALLNFL 342 (971)
T ss_pred hhhhhc--chhhHHHHHHHHhc---------ccceeEeeCCcccccHHHH-HHHHHhh
Confidence 999994 33556667887775 234577777754 444443 4444443
No 139
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.33 E-value=2.8e-06 Score=90.29 Aligned_cols=130 Identities=16% Similarity=0.234 Sum_probs=100.6
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|. .|+++|....-.+..|+ |....||-|||++..+|++-. ...|..|-
T Consensus 75 lG~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLn----------------------------AL~GkgVh 123 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLN----------------------------ALTGKGVI 123 (925)
T ss_pred hCC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHH----------------------------HhcCCceE
Confidence 466 79999998887777774 799999999999999988641 12455688
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHH-hchhcC------cccCCCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL-QHIEDR------NVSCDDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~~l~~~------~~~l~~l~~ 311 (420)
|++...-||..=...+..+..++|+.|++...+........ ...|||+.||..-|- ++|+.. ......+.|
T Consensus 124 VVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~f 201 (925)
T PRK12903 124 VSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNF 201 (925)
T ss_pred EEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccce
Confidence 99999999999888999999999999999988776654333 345899999998752 334322 122466889
Q ss_pred EEecCcchhh
Q 014666 312 VVLDEADTLF 321 (420)
Q Consensus 312 lVlDEaD~~l 321 (420)
.||||+|.+|
T Consensus 202 aIVDEVDSIL 211 (925)
T PRK12903 202 CLIDEVDSIL 211 (925)
T ss_pred eeeccchhee
Confidence 9999999876
No 140
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.31 E-value=4.1e-06 Score=90.49 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=38.5
Q ss_pred CCCCCCcHHHHhhHHH----HhcCCcEEEEccCCCCchhHhHHHHHHHhh
Q 014666 159 MGLFVPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQVYS 204 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~----i~~g~dvl~~a~TGsGKTla~~lp~l~~i~ 204 (420)
+-|..++|.|.+.... +..|.++++.||||+|||++.+.|+|.++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~ 55 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQ 55 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHH
Confidence 3566779999888654 557899999999999999999999998654
No 141
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.30 E-value=4.9e-06 Score=88.32 Aligned_cols=137 Identities=10% Similarity=0.045 Sum_probs=93.5
Q ss_pred ccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCc
Q 014666 185 SGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLD 264 (420)
Q Consensus 185 a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~ 264 (420)
+-+|||||.+|+-.+-..+. .|.++|||+|...|+.|+...++.... +..
T Consensus 167 ~~~GSGKTevyl~~i~~~l~----------------------------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~ 216 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLR----------------------------AGRGALVVVPDQRDVDRLEAALRALLG--AGD 216 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHH----------------------------cCCeEEEEecchhhHHHHHHHHHHHcC--CCc
Confidence 33699999999877765321 356799999999999999998886542 255
Q ss_pred eecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhh-cc--CCHHHHHHHHHHch
Q 014666 265 SSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF-DR--GFGPEISKILNPLK 337 (420)
Q Consensus 265 ~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l-~~--~~~~~l~~Il~~l~ 337 (420)
+..++++.+..+..+. ......|||||-..+ ...+.++.+|||||=|--. .. +..-+...+.-..-
T Consensus 217 v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra 289 (665)
T PRK14873 217 VAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA 289 (665)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH
Confidence 7778887776544333 344589999998776 3457899999999987332 11 22223333332222
Q ss_pred hhhcccCCCCceEEEEeecccchHHHH
Q 014666 338 DSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 338 ~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
.. .+..+|+-|||.+-+....
T Consensus 290 ~~------~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 290 HQ------HGCALLIGGHARTAEAQAL 310 (665)
T ss_pred HH------cCCcEEEECCCCCHHHHHH
Confidence 11 3789999999998665543
No 142
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.22 E-value=1.3e-05 Score=72.57 Aligned_cols=123 Identities=22% Similarity=0.264 Sum_probs=73.1
Q ss_pred CcHHHHhhHHHHhcCC--cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 164 PSEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 164 pt~iQ~~~i~~i~~g~--dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
+++-|..++..++... -++++++.|+|||.+. -.+...+.. .+.++++++
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~---------------------------~g~~v~~~a 53 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA---------------------------AGKRVIGLA 53 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH---------------------------TT--EEEEE
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh---------------------------CCCeEEEEC
Confidence 6788999999886543 4788899999999753 233332211 246799999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcc----cCCCceEEEecCc
Q 014666 242 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV----SCDDIRYVVLDEA 317 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~----~l~~l~~lVlDEa 317 (420)
||...+..+.... ++. ..|-.+++........ .+....+||||||
T Consensus 54 pT~~Aa~~L~~~~-------~~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEa 102 (196)
T PF13604_consen 54 PTNKAAKELREKT-------GIE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEA 102 (196)
T ss_dssp SSHHHHHHHHHHH-------TS-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSG
T ss_pred CcHHHHHHHHHhh-------Ccc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecc
Confidence 9999988855541 111 1133333322222111 1556679999999
Q ss_pred chhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 318 D~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
-.+- ...+..++..++. .+.++|++-=+
T Consensus 103 smv~----~~~~~~ll~~~~~-------~~~klilvGD~ 130 (196)
T PF13604_consen 103 SMVD----SRQLARLLRLAKK-------SGAKLILVGDP 130 (196)
T ss_dssp GG-B----HHHHHHHHHHS-T--------T-EEEEEE-T
T ss_pred cccC----HHHHHHHHHHHHh-------cCCEEEEECCc
Confidence 9653 5677888887764 35677777654
No 143
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.20 E-value=1.8e-05 Score=85.82 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=82.5
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH--
Q 014666 179 KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF-- 256 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-- 256 (420)
.++.+..+||||||.+|+-.|+.... .....+.||+||+.+.-..+...+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~--------------------------~~~~~~fii~vp~~aI~egv~~~l~s~~ 113 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQ--------------------------KYGLFKFIIVVPTPAIKEGTRNFIQSDY 113 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHH--------------------------HcCCcEEEEEeCCHHHHHHHHHHhhHHH
Confidence 57999999999999999988876211 11235699999999888777766541
Q ss_pred ----hhc-cCC--CceecccCCC-------ChHHHHH-Hh------cCCCcEEEeChhHHHhchh-cC---------c-c
Q 014666 257 ----ISH-CAR--LDSSMENGGV-------SSKALED-VS------NAPIGMLIATPSEVLQHIE-DR---------N-V 304 (420)
Q Consensus 257 ----l~~-~~~--i~~~~~~gg~-------~~~~~~~-~l------~~~~~IlV~TP~~L~~~l~-~~---------~-~ 304 (420)
|.. +.+ ++...+.++. ....+.+ .. .+.++|+|.|-+.|..-.. +. . .
T Consensus 114 ~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~ 193 (986)
T PRK15483 114 AKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTS 193 (986)
T ss_pred HHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCC
Confidence 111 112 3333332221 1111111 11 1258999999998865321 11 0 1
Q ss_pred c---CCC-ceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 305 S---CDD-IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 305 ~---l~~-l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
. +.. =-.||+||+|+|-..+ .....| ..++ +.=++.||||++.
T Consensus 194 p~~~i~~~~PivIiDEPh~~~~~~--k~~~~i-~~ln---------pl~~lrysAT~~~ 240 (986)
T PRK15483 194 PVDALAATRPVVIIDEPHRFPRDN--KFYQAI-EALK---------PQMIIRFGATFPD 240 (986)
T ss_pred hHHHHHhCCCEEEEECCCCCCcch--HHHHHH-HhcC---------cccEEEEeeecCC
Confidence 1 111 1468999999994322 222333 3443 2236889999987
No 144
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.18 E-value=5.5e-06 Score=76.34 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=49.3
Q ss_pred CcHHHHhhHHHHhcCCc-EEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 164 PSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 164 pt~iQ~~~i~~i~~g~d-vl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
+.+-|..|+..++.... .++.||.|||||.+.+- ++..+++... ......+.++||++|
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~-------------------~~~~~~~~~il~~~~ 61 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFK-------------------SRSADRGKKILVVSP 61 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH--------------------------HCCCSS-EEEEES
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchh-------------------hhhhhccccceeecC
Confidence 56889999999999998 99999999999955333 3332211000 001235678999999
Q ss_pred cHHHHHHHHHHHHH
Q 014666 243 TEESADQGFHMAKF 256 (420)
Q Consensus 243 treLa~Qi~~~~~~ 256 (420)
|...+..+...+..
T Consensus 62 sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 62 SNAAVDNILERLKK 75 (236)
T ss_dssp SHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHh
Confidence 99999998887776
No 145
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.17 E-value=2.7e-06 Score=84.29 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=101.7
Q ss_pred CCcHHHHhhHHHHhc-C--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEE
Q 014666 163 VPSEIQCVGIPAVLN-G--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~-g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Li 239 (420)
.+.|+|..++.-++. | +.-|+.-|-|+|||++-+-.+.. -..++||
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-------------------------------ikK~clv 350 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-------------------------------IKKSCLV 350 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee-------------------------------ecccEEE
Confidence 578899999998773 4 67899999999999986555443 2346999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCc--------ccCCCceE
Q 014666 240 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN--------VSCDDIRY 311 (420)
Q Consensus 240 l~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~--------~~l~~l~~ 311 (420)
||.+--.+.|....+..++-...-.++.++.... .....++.|+|+|-..+..--++.. +.-..-.+
T Consensus 351 Lcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGl 425 (776)
T KOG1123|consen 351 LCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGL 425 (776)
T ss_pred EecCccCHHHHHHHHHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeee
Confidence 9999999999988888877555545555554332 2245678999999876543222110 11123468
Q ss_pred EEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 312 VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 312 lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
+|+||+|.+-..=|+..+.-+-.++ -++++|||-.+
T Consensus 426 lllDEVHvvPA~MFRRVlsiv~aHc-------------KLGLTATLvRE 461 (776)
T KOG1123|consen 426 LLLDEVHVVPAKMFRRVLSIVQAHC-------------KLGLTATLVRE 461 (776)
T ss_pred EEeehhccchHHHHHHHHHHHHHHh-------------hccceeEEeec
Confidence 9999999886444555444444443 47889998544
No 146
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.11 E-value=3.9e-05 Score=80.05 Aligned_cols=171 Identities=16% Similarity=0.182 Sum_probs=104.2
Q ss_pred cccc-CCCCHHHHHHHHHCCCCCCcHHHHhhHHHHh----cCCcEEEEccCCCCchhH---hHHHHHHHhhhhhhhhhhh
Q 014666 142 SFQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLA---YLLPLVQVYSQLDEEHHLQ 213 (420)
Q Consensus 142 ~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~----~g~dvl~~a~TGsGKTla---~~lp~l~~i~~~~~~~~~~ 213 (420)
.+.. +.+|..|-. .++++|+..+..+. ++.--|+.-..|-|||.- |+-.+.+
T Consensus 191 ~~~~~~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~------------ 250 (923)
T KOG0387|consen 191 KLEGGFKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHH------------ 250 (923)
T ss_pred cccccccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhh------------
Confidence 3444 566766644 45788999877654 466788889999999964 3333333
Q ss_pred hhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChH--------HHHH-----H
Q 014666 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK--------ALED-----V 280 (420)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~--------~~~~-----~ 280 (420)
. ......||||||.. +..|....+..+.. .+++.+++|..... .... .
T Consensus 251 ----------S------~k~~~paLIVCP~T-ii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~ 311 (923)
T KOG0387|consen 251 ----------S------GKLTKPALIVCPAT-IIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRK 311 (923)
T ss_pred ----------c------ccccCceEEEccHH-HHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheee
Confidence 0 01224699999975 44666666666543 56677766654410 0011 1
Q ss_pred hcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc-cc
Q 014666 281 SNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AE 359 (420)
Q Consensus 281 l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl-~~ 359 (420)
...+.+|+|+|-..+.-. . ..+.-..-.|+|+||.|++-+. ..++...+..++ ..+.|++|.|. -+
T Consensus 312 ~~~~~~ilitty~~~r~~-~-d~l~~~~W~y~ILDEGH~IrNp--ns~islackki~---------T~~RiILSGTPiQN 378 (923)
T KOG0387|consen 312 VATDGGILITTYDGFRIQ-G-DDLLGILWDYVILDEGHRIRNP--NSKISLACKKIR---------TVHRIILSGTPIQN 378 (923)
T ss_pred ecccCcEEEEehhhhccc-C-cccccccccEEEecCcccccCC--ccHHHHHHHhcc---------ccceEEeeCccccc
Confidence 123457999998876432 1 1111123479999999999543 455666666665 56778888885 44
Q ss_pred hHHHH
Q 014666 360 MLGEQ 364 (420)
Q Consensus 360 ~v~~~ 364 (420)
++.++
T Consensus 379 nL~EL 383 (923)
T KOG0387|consen 379 NLTEL 383 (923)
T ss_pred hHHHH
Confidence 55554
No 147
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.04 E-value=0.00011 Score=78.11 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=105.6
Q ss_pred CCcHHHHhhHHHHhc---CC-------cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCC
Q 014666 163 VPSEIQCVGIPAVLN---GK-------SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~---g~-------dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (420)
.+.|+|++.+.-+.+ |. -+|+.-..|+|||+. +|+++..+++.... ...
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~--------------------~~~ 296 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQ--------------------AKP 296 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcC--------------------ccc
Confidence 468999999875542 22 356666689999998 44455533332110 001
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCCh--HHHHHHhc-----CCCcEEEeChhHHHhchhcCccc
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS--KALEDVSN-----APIGMLIATPSEVLQHIEDRNVS 305 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~--~~~~~~l~-----~~~~IlV~TP~~L~~~l~~~~~~ 305 (420)
.--++|||+|. .|+.-.++.|.++.....+....++|+... ..+...+. ...-|+|-+-+.+.+.+. .+.
T Consensus 297 ~~~k~lVV~P~-sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il 373 (776)
T KOG0390|consen 297 LINKPLVVAPS-SLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KIL 373 (776)
T ss_pred cccccEEEccH-HHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHh
Confidence 12469999995 466777777777765556677777776653 11111111 112466777777765554 344
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc-cchHHHHHHHH
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AEMLGEQLSSL 368 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl-~~~v~~~~~~~ 368 (420)
...+.+||+||.|++= .-...+...+..+. ....|++|.|+ =+++.++++-+
T Consensus 374 ~~~~glLVcDEGHrlk--N~~s~~~kaL~~l~---------t~rRVLLSGTp~QNdl~EyFnlL 426 (776)
T KOG0390|consen 374 LIRPGLLVCDEGHRLK--NSDSLTLKALSSLK---------TPRRVLLTGTPIQNDLKEYFNLL 426 (776)
T ss_pred cCCCCeEEECCCCCcc--chhhHHHHHHHhcC---------CCceEEeeCCcccccHHHHHHHH
Confidence 5778999999999983 32444555566664 56778889996 45677666533
No 148
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.99 E-value=1.9e-05 Score=73.68 Aligned_cols=87 Identities=11% Similarity=0.164 Sum_probs=69.4
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCC-CChHHHHHHhcC-CCcEEEeChhHHHhchhcCcccCCC
Q 014666 231 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGG-VSSKALEDVSNA-PIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 231 ~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg-~~~~~~~~~l~~-~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
....|.+|||+.+---|..+.+.++.+.. -+..++.++.. ....+|...+.. ..+|.||||+||..++.++.+.+++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 34679999999988888888888777741 13456666655 467788888874 6899999999999999999999999
Q ss_pred ceEEEecCcc
Q 014666 309 IRYVVLDEAD 318 (420)
Q Consensus 309 l~~lVlDEaD 318 (420)
+.+||||--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999643
No 149
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.95 E-value=3.1e-06 Score=90.37 Aligned_cols=164 Identities=14% Similarity=0.151 Sum_probs=116.7
Q ss_pred CCcHHHHhhHHHHh-cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 163 VPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~-~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
...|+|...+-.+. -..++++.+|||+|||++|-+.+...+. ...+.++++++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~--------------------------~~p~~kvvyIa 980 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALS--------------------------YYPGSKVVYIA 980 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhc--------------------------cCCCccEEEEc
Confidence 45567776665443 3467899999999999999998876221 12456899999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC--cccCCCceEEEecCcch
Q 014666 242 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--NVSCDDIRYVVLDEADT 319 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~--~~~l~~l~~lVlDEaD~ 319 (420)
|-.+|+..-...+.......|+++.-+.|....... .. ..++|+|+||.+.-.+.+++ .-.+.++..+|+||.|.
T Consensus 981 p~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~--~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl 1057 (1230)
T KOG0952|consen 981 PDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVK--AV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL 1057 (1230)
T ss_pred CCchhhcccccchhhhcccCCceeEeccCccCCChh--he-ecCceEEcccccccCccccccchhhhccccceeeccccc
Confidence 999999887777776665558999998887765521 12 34789999999977776632 34578899999999996
Q ss_pred hhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 320 ~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
+ ..++++-++.|....+. .....+..+|.+.+|--+
T Consensus 1058 l-g~~rgPVle~ivsr~n~-~s~~t~~~vr~~glsta~ 1093 (1230)
T KOG0952|consen 1058 L-GEDRGPVLEVIVSRMNY-ISSQTEEPVRYLGLSTAL 1093 (1230)
T ss_pred c-cCCCcceEEEEeecccc-CccccCcchhhhhHhhhh
Confidence 6 46667777766665554 122334456777775544
No 150
>COG4889 Predicted helicase [General function prediction only]
Probab=97.93 E-value=3.3e-05 Score=81.28 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=90.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCC-----cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhh
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK-----SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLV 215 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~-----dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~ 215 (420)
..|+.+.- ..+...|.-..=..|.|+|+.||.+...|- --|+ ...|+|||+..+- +.+.+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLI-MAcGTGKTfTsLk-isEal------------ 204 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLI-MACGTGKTFTSLK-ISEAL------------ 204 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEE-EecCCCccchHHH-HHHHH------------
Confidence 45665543 455555555556689999999999887652 1222 3368999998553 22211
Q ss_pred hhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHH-------------------
Q 014666 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA------------------- 276 (420)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~------------------- 276 (420)
...++|+|+|+..|..|..+.+..-. ...++...++.+.....
T Consensus 205 -----------------a~~~iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~ 266 (1518)
T COG4889 205 -----------------AAARILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLE 266 (1518)
T ss_pred -----------------hhhheEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHH
Confidence 12569999999999998766654422 12333333333221110
Q ss_pred ------HHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhh
Q 014666 277 ------LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321 (420)
Q Consensus 277 ------~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l 321 (420)
..+.-..+--||++|-..+...-.-...-+..++++|.||||+-.
T Consensus 267 ~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTt 317 (1518)
T COG4889 267 DILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTT 317 (1518)
T ss_pred HHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccc
Confidence 111112344688888887765544334457889999999999864
No 151
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.87 E-value=9.9e-05 Score=78.28 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=95.6
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q 014666 179 KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 258 (420)
.=.++.||.|||||.+..-++-+.+ .....++|+|+-.+.|+.++...+....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l---------------------------~~~~~~VLvVShRrSL~~sL~~rf~~~~ 102 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDAL---------------------------KNPDKSVLVVSHRRSLTKSLAERFKKAG 102 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhc---------------------------cCCCCeEEEEEhHHHHHHHHHHHHhhcC
Confidence 3469999999999988765554411 1245679999999999999888876542
Q ss_pred ccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHH------HHHH
Q 014666 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE------ISKI 332 (420)
Q Consensus 259 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~------l~~I 332 (420)
-. ++....-.++.... ....+-|++....|..+-. ..+.+.++|||||+...+..-|.+. +..+
T Consensus 103 l~-gFv~Y~d~~~~~i~------~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~ 172 (824)
T PF02399_consen 103 LS-GFVNYLDSDDYIID------GRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNL 172 (824)
T ss_pred CC-cceeeecccccccc------ccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHH
Confidence 21 22222211111110 1124566667777766642 2367789999999998876533322 2222
Q ss_pred HHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc
Q 014666 333 LNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 333 l~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
+..+-. ....+|++-|+++....+++..+..+
T Consensus 173 L~~lI~-------~ak~VI~~DA~ln~~tvdFl~~~Rp~ 204 (824)
T PF02399_consen 173 LKELIR-------NAKTVIVMDADLNDQTVDFLASCRPD 204 (824)
T ss_pred HHHHHH-------hCCeEEEecCCCCHHHHHHHHHhCCC
Confidence 333222 24589999999999999999886644
No 152
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.87 E-value=0.00016 Score=80.13 Aligned_cols=190 Identities=15% Similarity=0.139 Sum_probs=116.7
Q ss_pred cccCCCCHHHHHHHHHC-CCC------CCcHHHHhhHHHHh--------------cCCcEEEEccCCCCchhHhHHHHHH
Q 014666 143 FQELGLKAEMIKAVEKM-GLF------VPSEIQCVGIPAVL--------------NGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 143 f~~l~l~~~l~~~l~~~-g~~------~pt~iQ~~~i~~i~--------------~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
|..+.=++.+++.+..+ =|. ...++|..+-+.+. .++.-+|.--+|||||++.+..+-.
T Consensus 217 ~~~~l~~~~ll~~i~~f~vf~~~~~~~~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~ 296 (962)
T COG0610 217 IKGFLAPERLLDIIRNFIVFDKSDDGLVKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARL 296 (962)
T ss_pred HHHHhCHHHHHHHHHheEEEeecCCcccchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHH
Confidence 44445567777777552 111 33444444433221 1245889999999999985444322
Q ss_pred HhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh
Q 014666 202 VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS 281 (420)
Q Consensus 202 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l 281 (420)
++. ....|.++||+-.++|-.|+...+..++....... ...+.....+.+
T Consensus 297 ------------------l~~--------~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l 346 (962)
T COG0610 297 ------------------LLE--------LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELL 346 (962)
T ss_pred ------------------HHh--------ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHH
Confidence 111 13678999999999999999999999977544322 233444455555
Q ss_pred cCC-CcEEEeChhHHHhchhcC-cccC-CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 282 NAP-IGMLIATPSEVLQHIEDR-NVSC-DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 282 ~~~-~~IlV~TP~~L~~~l~~~-~~~l-~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
..+ -.|||+|-..|-..+... ...+ .+=-.+|+||||+-- ++..-..+-..++ +...++|+.|.-
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~---------~a~~~gFTGTPi 414 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK---------KAIFIGFTGTPI 414 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc---------cceEEEeeCCcc
Confidence 544 489999999998888654 1112 223467899999763 3333333344443 578999999963
Q ss_pred c--h---HHHHHHHHhhcchh
Q 014666 359 E--M---LGEQLSSLMECLER 374 (420)
Q Consensus 359 ~--~---v~~~~~~~~~~~~~ 374 (420)
- + ....+..++.-+.+
T Consensus 415 ~~~d~~tt~~~fg~ylh~Y~i 435 (962)
T COG0610 415 FKEDKDTTKDVFGDYLHTYTI 435 (962)
T ss_pred ccccccchhhhhcceeEEEec
Confidence 2 1 23445555555544
No 153
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.85 E-value=3.6e-05 Score=83.20 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=94.7
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.|+++|...--++.+| -|....||-||||+..+|++-.. ..|..|=||+.
T Consensus 138 ~~ydVQLiGgivLh~G--~IAEM~TGEGKTLvatlp~yLnA----------------------------L~G~gVHvVTv 187 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSG--KISEMATGEGKTLVSTLPTFLNA----------------------------LTGRGVHVVTV 187 (1025)
T ss_pred cccchHHhhhHHhhcC--CccccCCCCCcchHhHHHHHHHH----------------------------HcCCCcEEEee
Confidence 5778887665555555 47888999999999999986521 13445788899
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcC------cccCCCceEEEec
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVLD 315 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVlD 315 (420)
.--||..=...+..+..++|+.|.++..+...... .-...|||..||..-| .++|+.. ......+.|.|||
T Consensus 188 NDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~R--r~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVD 265 (1025)
T PRK12900 188 NDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEER--REQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVD 265 (1025)
T ss_pred chHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHH--HHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEe
Confidence 99999998888999999999999999776665543 3456699999999866 3444322 1224568899999
Q ss_pred Ccchhh
Q 014666 316 EADTLF 321 (420)
Q Consensus 316 EaD~~l 321 (420)
|+|-+|
T Consensus 266 EvDSvL 271 (1025)
T PRK12900 266 EVDSVL 271 (1025)
T ss_pred chhhhh
Confidence 999765
No 154
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.81 E-value=0.00032 Score=66.73 Aligned_cols=177 Identities=17% Similarity=0.170 Sum_probs=110.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhc----------CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhh
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN----------GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHH 211 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~----------g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~ 211 (420)
-+-.+.||+.++.. | .++..|.+++-.+.+ +.-.++--.||.||--...--|++.+++
T Consensus 22 ~~y~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~------ 89 (303)
T PF13872_consen 22 PTYRLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR------ 89 (303)
T ss_pred CCcccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc------
Confidence 34556788866543 4 478999998876542 3457888889999876655555553321
Q ss_pred hhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeC
Q 014666 212 LQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIAT 291 (420)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~T 291 (420)
.+.++|.|..+..|-....+.++.++.. .+.+..+.. .... ....-.-.||.+|
T Consensus 90 ---------------------Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~---~~~~~~~GvlF~T 143 (303)
T PF13872_consen 90 ---------------------GRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYG---DIIRLKEGVLFST 143 (303)
T ss_pred ---------------------CCCceEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccC---cCCCCCCCccchh
Confidence 2346999999999999999999988754 333222211 0000 0011234589999
Q ss_pred hhHHHhchhcCc---cc-------C--CCceEEEecCcchhhccCC--------HHHHHHHHHHchhhhcccCCCCceEE
Q 014666 292 PSEVLQHIEDRN---VS-------C--DDIRYVVLDEADTLFDRGF--------GPEISKILNPLKDSALKSNGQGFQTI 351 (420)
Q Consensus 292 P~~L~~~l~~~~---~~-------l--~~l~~lVlDEaD~~l~~~~--------~~~l~~Il~~l~~~~~~~~~~~~Q~v 351 (420)
-..|...-..+. .. + ..=.+|||||+|.+-...- +..+..+-..|| +-++|
T Consensus 144 Ys~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP---------~ARvv 214 (303)
T PF13872_consen 144 YSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLP---------NARVV 214 (303)
T ss_pred HHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCC---------CCcEE
Confidence 887766643210 00 0 1124899999999865432 123344444554 56799
Q ss_pred EEeecccchHHHHH
Q 014666 352 LVTAAIAEMLGEQL 365 (420)
Q Consensus 352 ~~SATl~~~v~~~~ 365 (420)
.+|||-..+..++.
T Consensus 215 Y~SATgasep~Nma 228 (303)
T PF13872_consen 215 YASATGASEPRNMA 228 (303)
T ss_pred EecccccCCCceee
Confidence 99999988877763
No 155
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.74 E-value=0.00013 Score=72.29 Aligned_cols=108 Identities=13% Similarity=0.207 Sum_probs=67.1
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhc
Q 014666 180 SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~ 259 (420)
-++|.|..|||||+..+--+.. + .....+..+++++++..|...+...+.....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l-------------------------~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~ 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-L-------------------------QNSEEGKKVLYLCGNHPLRNKLREQLAKKYN 56 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-h-------------------------hccccCCceEEEEecchHHHHHHHHHhhhcc
Confidence 4789999999999874433322 1 0012456799999999999887777655430
Q ss_pred cCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccC-------CHHHHHHH
Q 014666 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-------FGPEISKI 332 (420)
Q Consensus 260 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~-------~~~~l~~I 332 (420)
. ......+..|..+...+..........++|||||||+|.+.+ ...+|..|
T Consensus 57 ~----------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i 114 (352)
T PF09848_consen 57 P----------------------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEI 114 (352)
T ss_pred c----------------------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHH
Confidence 0 001122334444444333223345778999999999998732 24666666
Q ss_pred HHH
Q 014666 333 LNP 335 (420)
Q Consensus 333 l~~ 335 (420)
+..
T Consensus 115 ~~~ 117 (352)
T PF09848_consen 115 IKR 117 (352)
T ss_pred Hhc
Confidence 664
No 156
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.70 E-value=8.1e-05 Score=80.68 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=91.8
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.|+++|...--++..| -|....||-||||+..+|+.-.. ..|.-+-||+.
T Consensus 169 ~~yDVQliGgivLh~G--~IAEM~TGEGKTLvAtlp~yLnA----------------------------L~GkgVHvVTV 218 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQG--KIAEMATGEGKTLVATLPVYLNA----------------------------LTGNGVHVVTV 218 (1112)
T ss_pred cccchHHhhhhhhcCC--ceeeecCCCCchhHHHHHHHHHH----------------------------HcCCCcEEEEe
Confidence 5677776554444444 58899999999999999987521 13445888899
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccC-CCChHHHHHHhcCCCcEEEeChhHH-HhchhcC------cccCCCceEEEe
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENG-GVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRYVVL 314 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~g-g~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~lVl 314 (420)
+--||..=...+..+..++|+.|+++.. +.... .+.-...|||..||..-| .++|+.+ ......+.|.||
T Consensus 219 NDYLA~RDaewmgply~fLGLsvg~i~~~~~~~~--~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIV 296 (1112)
T PRK12901 219 NDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSE--ARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIV 296 (1112)
T ss_pred chhhhhccHHHHHHHHHHhCCceeecCCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEe
Confidence 9999998888888899999999998866 33333 233445689999999866 3444322 112456889999
Q ss_pred cCcchhh
Q 014666 315 DEADTLF 321 (420)
Q Consensus 315 DEaD~~l 321 (420)
||+|-+|
T Consensus 297 DEvDSIL 303 (1112)
T PRK12901 297 DEVDSVL 303 (1112)
T ss_pred echhhhh
Confidence 9999775
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.67 E-value=0.00025 Score=70.54 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=96.5
Q ss_pred CCcHHHHhhHHHHhcCC-----cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 163 VPSEIQCVGIPAVLNGK-----SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~-----dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.+-|+|.+.+..+.... --|+.-..|-|||.-.+--++. ...+...
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla-----------------------------e~~ra~t 234 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA-----------------------------EVDRAPT 234 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh-----------------------------ccccCCe
Confidence 56788998887665432 3577778999999875444443 1234459
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC--c------c-----
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--N------V----- 304 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~--~------~----- 304 (420)
|||+|+.+| .|..+.+..+.. -.+++...+ |.........+. ++|+|.+|...+-...+.. + +
T Consensus 235 LVvaP~VAl-mQW~nEI~~~T~-gslkv~~Yh-G~~R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~S 310 (791)
T KOG1002|consen 235 LVVAPTVAL-MQWKNEIERHTS-GSLKVYIYH-GAKRDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKS 310 (791)
T ss_pred eEEccHHHH-HHHHHHHHHhcc-CceEEEEEe-cccccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccc
Confidence 999999988 466667776655 234554444 444444444443 4899999999877666431 1 1
Q ss_pred cCCCceE--EEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc-cchHHHH
Q 014666 305 SCDDIRY--VVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AEMLGEQ 364 (420)
Q Consensus 305 ~l~~l~~--lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl-~~~v~~~ 364 (420)
.|.+++| +|+||||.+-+.. .......-.|. .....++|.|. -+.+.++
T Consensus 311 lLHsi~~~RiIlDEAH~IK~R~--snTArAV~~L~---------tt~rw~LSGTPLQNrigEl 362 (791)
T KOG1002|consen 311 LLHSIKFYRIILDEAHNIKDRQ--SNTARAVFALE---------TTYRWCLSGTPLQNRIGEL 362 (791)
T ss_pred hhhhceeeeeehhhhccccccc--ccHHHHHHhhH---------hhhhhhccCCcchhhHHHH
Confidence 2444544 8999999886654 22222222332 23456778885 3445544
No 158
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.63 E-value=0.00043 Score=62.80 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=70.9
Q ss_pred CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 161 ~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
+...|.-|..++.++++..-+++.||.|||||+..+-.+++.+.. ...-+.+|+
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~--------------------------g~~~kiii~ 55 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE--------------------------GEYDKIIIT 55 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT--------------------------TS-SEEEEE
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh--------------------------CCCcEEEEE
Confidence 345688999999999988889999999999999888877773321 133467777
Q ss_pred cCcHHHHHHHHH----HHHHhhccCC-C--ceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEE
Q 014666 241 CTTEESADQGFH----MAKFISHCAR-L--DSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313 (420)
Q Consensus 241 ~PtreLa~Qi~~----~~~~l~~~~~-i--~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 313 (420)
-|+.+....+-- .-.++..+.. + ....+.+...... .+ ....|-+..+..+ +.+. +.+ .+||
T Consensus 56 Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~---~~-~~~~Ie~~~~~~i----RGrt--~~~-~~iI 124 (205)
T PF02562_consen 56 RPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEE---LI-QNGKIEIEPLAFI----RGRT--FDN-AFII 124 (205)
T ss_dssp E-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHH---HH-HTTSEEEEEGGGG----TT----B-S-EEEE
T ss_pred ecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHH---Hh-hcCeEEEEehhhh----cCcc--ccc-eEEE
Confidence 777653111100 0000000000 0 0000112111111 11 1234555544432 2222 333 8999
Q ss_pred ecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 314 lDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
||||..+- ..++..++.++.. +.++|++.-.
T Consensus 125 vDEaQN~t----~~~~k~ilTR~g~--------~skii~~GD~ 155 (205)
T PF02562_consen 125 VDEAQNLT----PEELKMILTRIGE--------GSKIIITGDP 155 (205)
T ss_dssp E-SGGG------HHHHHHHHTTB-T--------T-EEEEEE--
T ss_pred EecccCCC----HHHHHHHHcccCC--------CcEEEEecCc
Confidence 99999774 7789999988864 6777777544
No 159
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.63 E-value=0.00024 Score=73.40 Aligned_cols=179 Identities=16% Similarity=0.164 Sum_probs=100.9
Q ss_pred CCcHHHHhhHHHHhc-----CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 163 VPSEIQCVGIPAVLN-----GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~-----g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.+-|.|..++-.+.- +.--|+....|-|||++.+-.+++ ... ...++..+ . .... ..
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~----qK~---------~~~~~~~~--~--~~a~-~T 386 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILH----QKA---------ARKAREKK--G--ESAS-KT 386 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHH----HHH---------HHHhhccc--c--cccC-Ce
Confidence 346788888877653 345788888999999975555544 000 00111111 0 1111 49
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHh----chhcC--cccCCCc--
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ----HIEDR--NVSCDDI-- 309 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~----~l~~~--~~~l~~l-- 309 (420)
|||||-. |..|.+..+..-....-++|.+++|.....-..+.+ ..+||||+|..-+.. -+..+ .-.|.+|
T Consensus 387 LII~PaS-li~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W 464 (901)
T KOG4439|consen 387 LIICPAS-LIHQWEAEVARRLEQNALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAW 464 (901)
T ss_pred EEeCcHH-HHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhH
Confidence 9999965 667777777666666677888877765322222333 348999999876655 11111 1123344
Q ss_pred eEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc-cchHHHHHH--HHhhcc
Q 014666 310 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AEMLGEQLS--SLMECL 372 (420)
Q Consensus 310 ~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl-~~~v~~~~~--~~~~~~ 372 (420)
..|||||||.+-+. ..+-...+..|. .+-..++|+|. -+....++. +|++.+
T Consensus 465 ~RVILDEAH~IrN~--~tq~S~AVC~L~---------a~~RWclTGTPiqNn~~DvysLlrFLr~~ 519 (901)
T KOG4439|consen 465 SRVILDEAHNIRNS--NTQCSKAVCKLS---------AKSRWCLTGTPIQNNLWDVYSLLRFLRCP 519 (901)
T ss_pred HHhhhhhhhhhccc--chhHHHHHHHHh---------hcceeecccCccccchhHHHHHHHHhcCC
Confidence 45899999988543 333333444443 22345556663 445454432 344443
No 160
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.62 E-value=0.00034 Score=71.44 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=49.3
Q ss_pred CCcHHHHhhHHHHhcCCc-EEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 163 VPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~d-vl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
.+.+-|..|+....+.++ .+++||+|+|||.+...-+.+.+. .+.++||.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk----------------------------~~k~VLVca 236 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK----------------------------QKKRVLVCA 236 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH----------------------------cCCeEEEEc
Confidence 567789999998887766 689999999999986665555221 356799999
Q ss_pred CcHHHHHHHHHH
Q 014666 242 TTEESADQGFHM 253 (420)
Q Consensus 242 PtreLa~Qi~~~ 253 (420)
||.+-+.-|...
T Consensus 237 PSn~AVdNiver 248 (649)
T KOG1803|consen 237 PSNVAVDNIVER 248 (649)
T ss_pred CchHHHHHHHHH
Confidence 999988887774
No 161
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.61 E-value=0.00082 Score=70.78 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=84.0
Q ss_pred cHHHHhhHHHHhcCCcEEEEccCCCCchhHh--HHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY--LLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 165 t~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~--~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.++|+.++..++.++-+++.|+.|||||.+. ++.++.... .....+++++.+|
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~-------------------------~~~~~~~I~l~AP 201 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQS-------------------------PKQGKLRIALAAP 201 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhc-------------------------cccCCCcEEEECC
Confidence 4799999999999999999999999999763 333322000 0001357999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC------cccCCCceEEEecC
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR------NVSCDDIRYVVLDE 316 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~------~~~l~~l~~lVlDE 316 (420)
|.--|..+.+.+.......... . . ......+-..|-.+|+...... ....-.+++|||||
T Consensus 202 TGkAA~rL~e~~~~~~~~l~~~---------~-~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDE 267 (586)
T TIGR01447 202 TGKAAARLAESLRKAVKNLAAA---------E-A----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDE 267 (586)
T ss_pred cHHHHHHHHHHHHhhhcccccc---------h-h----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcc
Confidence 9998888776655432211110 0 0 0000112233444444332210 11233579999999
Q ss_pred cchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 317 aD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
|-++ + ...+..++..++. ..++|++.=.
T Consensus 268 aSMv-d---~~l~~~ll~al~~--------~~rlIlvGD~ 295 (586)
T TIGR01447 268 ASMV-D---LPLMAKLLKALPP--------NTKLILLGDK 295 (586)
T ss_pred cccC-C---HHHHHHHHHhcCC--------CCEEEEECCh
Confidence 9844 3 4567778887763 5677777543
No 162
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.57 E-value=0.00037 Score=72.95 Aligned_cols=163 Identities=17% Similarity=0.229 Sum_probs=95.8
Q ss_pred CcHHHHhhHHHHh----cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEE
Q 014666 164 PSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239 (420)
Q Consensus 164 pt~iQ~~~i~~i~----~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Li 239 (420)
+-++|.--+..+. .+-+.|+.-..|-|||.- +|..+..|.+. ...| .-||
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~------------------------g~~g-pHLV 453 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI------------------------GNPG-PHLV 453 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc------------------------CCCC-CcEE
Confidence 5567777766432 566789999999999964 33333322211 1233 3588
Q ss_pred EcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcC-cccCCCceEEE
Q 014666 240 LCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDR-NVSCDDIRYVV 313 (420)
Q Consensus 240 l~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~-~~~l~~l~~lV 313 (420)
|||.--|- ++++.+.+.+ .+++-..+|......+.+.. ..+.+|||+|......--..+ .+.-.++.++|
T Consensus 454 VvPsSTle----NWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~vi 529 (941)
T KOG0389|consen 454 VVPSSTLE----NWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVI 529 (941)
T ss_pred EecchhHH----HHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEE
Confidence 88987664 4455555444 47788888876554444322 125899999987543221111 12235688999
Q ss_pred ecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec-ccchHHHHHHH
Q 014666 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA-IAEMLGEQLSS 367 (420)
Q Consensus 314 lDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT-l~~~v~~~~~~ 367 (420)
+||+|.+=++. ......++.. + -.+.++++.| +-+++.++++-
T Consensus 530 yDEgHmLKN~~-SeRy~~LM~I-~---------An~RlLLTGTPLQNNL~ELiSL 573 (941)
T KOG0389|consen 530 YDEGHMLKNRT-SERYKHLMSI-N---------ANFRLLLTGTPLQNNLKELISL 573 (941)
T ss_pred ecchhhhhccc-hHHHHHhccc-c---------ccceEEeeCCcccccHHHHHHH
Confidence 99999776554 2233333321 1 2245666666 56677776553
No 163
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.56 E-value=0.00091 Score=70.67 Aligned_cols=139 Identities=18% Similarity=0.161 Sum_probs=84.4
Q ss_pred cHHHHhhHHHHhcCCcEEEEccCCCCchhHhH--HHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL--LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 165 t~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~--lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.++|+.|+-..+.++-+++.+++|+|||.+.. +..+..+ . .....++++++|
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~--------------------~------~~~~~~i~l~AP 207 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQL--------------------A------DGERCRIRLAAP 207 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------------------c------CCCCcEEEEECC
Confidence 58999999999999999999999999997632 2222200 0 012356888999
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC------cccCCCceEEEecC
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR------NVSCDDIRYVVLDE 316 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~------~~~l~~l~~lVlDE 316 (420)
|..-|..+.+.+.......++. ... ......-..|-.+|+...... ..+.-.+++|||||
T Consensus 208 TgkAA~rL~e~~~~~~~~~~~~----------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDE 273 (615)
T PRK10875 208 TGKAAARLTESLGKALRQLPLT----------DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDE 273 (615)
T ss_pred cHHHHHHHHHHHHhhhhccccc----------hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEECh
Confidence 9999988877665433222110 000 000111233555554442211 11223468999999
Q ss_pred cchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 317 aD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
|-++ | ...+..++..++. +.++|++.-
T Consensus 274 aSMv-d---~~lm~~ll~al~~--------~~rlIlvGD 300 (615)
T PRK10875 274 ASMV-D---LPMMARLIDALPP--------HARVIFLGD 300 (615)
T ss_pred Hhcc-c---HHHHHHHHHhccc--------CCEEEEecc
Confidence 9844 3 5667778887763 567777753
No 164
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.55 E-value=0.00041 Score=73.57 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=34.5
Q ss_pred CCcHHHHhhHHH----HhcCCcEEEEccCCCCchhHhHHHHHHHhhhh
Q 014666 163 VPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQL 206 (420)
Q Consensus 163 ~pt~iQ~~~i~~----i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~ 206 (420)
.|++.|...+.. +....+.++.+|||+|||++.+=..|.+....
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~ 68 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHL 68 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh
Confidence 589999887654 44678999999999999999877777655443
No 165
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.47 E-value=0.0012 Score=71.35 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=47.4
Q ss_pred HCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
..++ .+++-|+.|+..+..++-+++.++.|+|||.+.. .++..+ .. ......+
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~------------------~~-------~~~~~~v 371 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELA------------------EE-------LGGLLPV 371 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHH------------------HH-------cCCCceE
Confidence 3454 6899999999999988899999999999997532 222211 00 0011458
Q ss_pred EEEcCcHHHHHHHH
Q 014666 238 IVLCTTEESADQGF 251 (420)
Q Consensus 238 Lil~PtreLa~Qi~ 251 (420)
++++||-.-|..+.
T Consensus 372 ~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 372 GLAAPTGRAAKRLG 385 (720)
T ss_pred EEEeCchHHHHHHH
Confidence 88999998887543
No 166
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.46 E-value=0.00024 Score=74.97 Aligned_cols=145 Identities=16% Similarity=0.193 Sum_probs=77.6
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh-
Q 014666 179 KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI- 257 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l- 257 (420)
-++=+...||+|||.+|+-.|.. | ++ .-.-.+-||+|||.+.-.-++...+..
T Consensus 75 lNiDI~METGTGKTy~Ylrtmfe-L------------------hk-------~YG~~KFIivVPs~AIkeGv~~~s~~~~ 128 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFE-L------------------HK-------KYGLFKFIIVVPSLAIKEGVFLTSKETT 128 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHH-H------------------HH-------HhCceeEEEEeccHHHHhhhHHHHHHHH
Confidence 46778889999999999877665 1 00 012246899999988655544333222
Q ss_pred -------hccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc------hhcCccc--------------CCCc-
Q 014666 258 -------SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH------IEDRNVS--------------CDDI- 309 (420)
Q Consensus 258 -------~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~------l~~~~~~--------------l~~l- 309 (420)
...+.+..+.. ........-...+.|.+++-|-..+..- |...... +..+
T Consensus 129 ehF~k~~Yent~~e~~i~--~~~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~r 206 (985)
T COG3587 129 EHFFKSEYENTRLESYIY--DEDIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMR 206 (985)
T ss_pred HHHhhhhccCcceeEEee--chHHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcC
Confidence 22222222222 1111111222334567777665544222 2211111 1111
Q ss_pred eEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 310 RYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 310 ~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
-.+|+||-|+|... -.....|. .++ +.-++=|+||++.+...
T Consensus 207 PIvIvDEPh~f~~~--~k~~~~i~-~l~---------pl~ilRfgATfkd~y~~ 248 (985)
T COG3587 207 PIVIVDEPHRFLGD--DKTYGAIK-QLN---------PLLILRFGATFKDEYNN 248 (985)
T ss_pred CEEEecChhhcccc--hHHHHHHH-hhC---------ceEEEEecccchhhhcC
Confidence 46899999999743 11222222 221 34578899999988774
No 167
>PRK10536 hypothetical protein; Provisional
Probab=97.45 E-value=0.0022 Score=60.07 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=36.1
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.++..-+..|...+.++.++..+++.|++|||||+..+...++
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3556678899999999999888999999999999887766665
No 168
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.41 E-value=0.0026 Score=70.46 Aligned_cols=127 Identities=18% Similarity=0.178 Sum_probs=77.8
Q ss_pred CCCCCCcHHHHhhHHHHhcCCc-EEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~d-vl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.|+ .+++-|..++..++.+.+ +++.+..|+|||++ +-.++..+ ...+.++
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~---------------------------e~~G~~V 393 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW---------------------------EAAGYEV 393 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH---------------------------HHcCCeE
Confidence 455 689999999999998665 68999999999986 33333311 0135679
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCc
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 317 (420)
+.++||--.|..+.. .+|+... |-.+|..-...+...+....+||||||
T Consensus 394 ~~~ApTGkAA~~L~e-------~tGi~a~------------------------TI~sll~~~~~~~~~l~~~~vlIVDEA 442 (988)
T PRK13889 394 RGAALSGIAAENLEG-------GSGIASR------------------------TIASLEHGWGQGRDLLTSRDVLVIDEA 442 (988)
T ss_pred EEecCcHHHHHHHhh-------ccCcchh------------------------hHHHHHhhhcccccccccCcEEEEECc
Confidence 999999877755432 1232211 222222111222334567789999999
Q ss_pred chhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 318 D~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
-.+ + ...+..++..... .+.++|++.=+
T Consensus 443 SMv-~---~~~m~~LL~~a~~-------~garvVLVGD~ 470 (988)
T PRK13889 443 GMV-G---TRQLERVLSHAAD-------AGAKVVLVGDP 470 (988)
T ss_pred ccC-C---HHHHHHHHHhhhh-------CCCEEEEECCH
Confidence 844 2 3455666654432 35677776544
No 169
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.39 E-value=0.0083 Score=65.59 Aligned_cols=164 Identities=16% Similarity=0.184 Sum_probs=95.5
Q ss_pred cCCCCHHHHHHHHHCCCCCCcHHHHhhHHHH----hcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 145 ELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV----LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 145 ~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i----~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
+.+++.-|.-.|+ .+|..-+..+ .++-|-|+.-..|-|||.- .|.++.++-..
T Consensus 605 ktpvPsLLrGqLR--------eYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACe-------------- 661 (1958)
T KOG0391|consen 605 KTPVPSLLRGQLR--------EYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACE-------------- 661 (1958)
T ss_pred ccCchHHHHHHHH--------HHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhc--------------
Confidence 3455555544443 4566655543 2456889999999999975 34444433221
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH-Hhc--CCCcEEEeChhHHHh
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED-VSN--APIGMLIATPSEVLQ 297 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~-~l~--~~~~IlV~TP~~L~~ 297 (420)
....|| -||||||-.+.+=- -.++.++ .++++...||........+ .|. +..+|.|++...+..
T Consensus 662 ---------egnWGP-HLIVVpTsviLnWE-MElKRwc--PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~q 728 (1958)
T KOG0391|consen 662 ---------EGNWGP-HLIVVPTSVILNWE-MELKRWC--PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQ 728 (1958)
T ss_pred ---------ccCCCC-ceEEeechhhhhhh-HHHhhhC--CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHh
Confidence 123455 47778886654321 2344443 4788888888655433322 222 335888888877765
Q ss_pred chhcCcccCCCceEEEecCcchhhccCCHHH-HHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 298 HIEDRNVSCDDIRYVVLDEADTLFDRGFGPE-ISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 298 ~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~-l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
-+. .|.-.+-+||||||||.+- +|..+ +..++. ++ ..|.++++.|.-
T Consensus 729 d~~--AFkrkrWqyLvLDEaqnIK--nfksqrWQAlln-fn---------sqrRLLLtgTPL 776 (1958)
T KOG0391|consen 729 DLT--AFKRKRWQYLVLDEAQNIK--NFKSQRWQALLN-FN---------SQRRLLLTGTPL 776 (1958)
T ss_pred HHH--HHHhhccceeehhhhhhhc--chhHHHHHHHhc-cc---------hhheeeecCCch
Confidence 553 2223456799999999994 44333 333443 32 346677777754
No 170
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.36 E-value=0.0017 Score=69.24 Aligned_cols=66 Identities=15% Similarity=0.163 Sum_probs=49.7
Q ss_pred CCcHHHHhhHHHHhcC-CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 163 VPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g-~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
.+++.|..|+..++.. ..+++.||+|||||.+..--+.+.+ ..+.++|+++
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~----------------------------~~g~~VLv~a 208 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV----------------------------KRGLRVLVTA 208 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH----------------------------HcCCCEEEEc
Confidence 5689999999988866 6788999999999966433333311 0345799999
Q ss_pred CcHHHHHHHHHHHHH
Q 014666 242 TTEESADQGFHMAKF 256 (420)
Q Consensus 242 PtreLa~Qi~~~~~~ 256 (420)
||..-|.++...+..
T Consensus 209 ~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 209 PSNIAVDNLLERLAL 223 (637)
T ss_pred CcHHHHHHHHHHHHh
Confidence 999888888777665
No 171
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.35 E-value=0.00088 Score=69.00 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=59.5
Q ss_pred HHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCC
Q 014666 155 AVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH 234 (420)
Q Consensus 155 ~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (420)
.+...|+..+..-|..|+.++++..=-|+++|+|+|||.+-.--+++.+ + ...
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~------------------~---------~~~ 454 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLA------------------R---------QHA 454 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHH------------------H---------hcC
Confidence 4455677888999999999999999999999999999988665555522 1 134
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHh
Q 014666 235 PRAIVLCTTEESADQGFHMAKFI 257 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l 257 (420)
..+||++|+.--+.|+..-+...
T Consensus 455 ~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 455 GPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred CceEEEcccchhHHHHHHHHHhc
Confidence 56999999998888877766553
No 172
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.22 E-value=0.00083 Score=67.99 Aligned_cols=183 Identities=7% Similarity=-0.065 Sum_probs=119.9
Q ss_pred HHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCC
Q 014666 155 AVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH 234 (420)
Q Consensus 155 ~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (420)
.+..+.-.....+|..+|..+.+|+++++...|.+||.++|.+..+..++.- ..
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~--------------------------~~ 331 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC--------------------------HA 331 (1034)
T ss_pred HHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC--------------------------cc
Confidence 3445555678899999999999999999999999999999999887743221 12
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhc---cCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCc----ccCC
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISH---CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN----VSCD 307 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~---~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~----~~l~ 307 (420)
-..+++.||.+++....+.+.-... ...--++-.+.|..........+.+.+++.+.|..+...+--++ ..+-
T Consensus 332 s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~ 411 (1034)
T KOG4150|consen 332 TNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVF 411 (1034)
T ss_pred cceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHH
Confidence 2367778888887653322211110 01112333455555555566677889999999987766554332 2344
Q ss_pred CceEEEecCcchhhccCCHHHHHHHHHHchhhhcc-cCCCCceEEEEeecccchHHHH
Q 014666 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALK-SNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~-~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
.+.+++.||+|.++ .-|+..+...++.|.+...- -...+.|++-.|||+-..++..
T Consensus 412 ~~~~~~~~~~~~Y~-~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~ 468 (1034)
T KOG4150|consen 412 EELCKDTNSCALYL-FPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLR 468 (1034)
T ss_pred HHHHhcccceeeee-cchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHH
Confidence 57889999999775 33555555555444332211 1235789999999998877643
No 173
>PF13245 AAA_19: Part of AAA domain
Probab=97.16 E-value=0.0019 Score=49.01 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=36.0
Q ss_pred CCc-EEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHH
Q 014666 178 GKS-VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMA 254 (420)
Q Consensus 178 g~d-vl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~ 254 (420)
+.. +++.|+.|||||...+--+...+... .. .+.++||++||+..+..+.+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~-----------------------~~-~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAAR-----------------------AD-PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHh-----------------------cC-CCCeEEEECCCHHHHHHHHHHH
Confidence 444 55699999999976544443311000 01 1567999999999999988777
No 174
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.16 E-value=0.0059 Score=66.34 Aligned_cols=136 Identities=16% Similarity=0.197 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHHhcC-CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcc
Q 014666 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEA 226 (420)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g-~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~ 226 (420)
+++..+...-..++ .+++-|..|+..++.+ +-+++.++.|+|||...- .++..+ .
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~------------------~---- 393 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAW------------------E---- 393 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHH------------------H----
Confidence 44444333322344 5899999999988874 567999999999996632 233211 0
Q ss_pred cCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccC
Q 014666 227 LLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC 306 (420)
Q Consensus 227 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l 306 (420)
..+.++++++||--.|..+.. .+++... |-.++..-+..+...+
T Consensus 394 -----~~g~~V~~~ApTg~Aa~~L~~-------~~g~~a~------------------------Ti~~~~~~~~~~~~~~ 437 (744)
T TIGR02768 394 -----AAGYRVIGAALSGKAAEGLQA-------ESGIESR------------------------TLASLEYAWANGRDLL 437 (744)
T ss_pred -----hCCCeEEEEeCcHHHHHHHHh-------ccCCcee------------------------eHHHHHhhhccCcccC
Confidence 135679999999877766432 1232211 1122211112222335
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEe
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 354 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~S 354 (420)
...++||||||-.+ + ...+..++..... .+.++|++.
T Consensus 438 ~~~~llIvDEasMv-~---~~~~~~Ll~~~~~-------~~~kliLVG 474 (744)
T TIGR02768 438 SDKDVLVIDEAGMV-G---SRQMARVLKEAEE-------AGAKVVLVG 474 (744)
T ss_pred CCCcEEEEECcccC-C---HHHHHHHHHHHHh-------cCCEEEEEC
Confidence 67899999999854 2 3445556654332 255666665
No 175
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.16 E-value=0.0035 Score=68.69 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=103.2
Q ss_pred cHHHHhhHHH--Hhc--CCcEEEEccCCCCchhH-hHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEE
Q 014666 165 SEIQCVGIPA--VLN--GKSVVLSSGSGSGRTLA-YLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239 (420)
Q Consensus 165 t~iQ~~~i~~--i~~--g~dvl~~a~TGsGKTla-~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Li 239 (420)
..+|++-+.. +++ +-+-|+|--.|-|||+- .++-+..+..+ +.+. ......-.||
T Consensus 977 RkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r-----------------~s~~---~e~~~~PSLI 1036 (1549)
T KOG0392|consen 977 RKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKR-----------------RSES---SEFNRLPSLI 1036 (1549)
T ss_pred HHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhh-----------------cccc---hhhccCCeEE
Confidence 3467776654 332 34789999999999986 34444442211 0000 0112233899
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcch
Q 014666 240 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT 319 (420)
Q Consensus 240 l~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~ 319 (420)
|||.. |+-.....+.+|+.+ +++...+|+-......+.-.++.+|+|+....+.+-+.. +.=..-.|.|+||-|.
T Consensus 1037 VCPsT-LtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHV 1111 (1549)
T KOG0392|consen 1037 VCPST-LTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHV 1111 (1549)
T ss_pred ECCch-hhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcce
Confidence 99964 555555666666554 566666776555544444445679999999887633321 1112245899999998
Q ss_pred hhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc-cc---hHHHHHHHHhhcc
Q 014666 320 LFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI-AE---MLGEQLSSLMECL 372 (420)
Q Consensus 320 ~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl-~~---~v~~~~~~~~~~~ 372 (420)
|- .-..-+......|.. + ..+++|.|. -+ +++.++..+|..+
T Consensus 1112 ik--N~ktkl~kavkqL~a--------~-hRLILSGTPIQNnvleLWSLFdFLMPGf 1157 (1549)
T KOG0392|consen 1112 IK--NSKTKLTKAVKQLRA--------N-HRLILSGTPIQNNVLELWSLFDFLMPGF 1157 (1549)
T ss_pred ec--chHHHHHHHHHHHhh--------c-ceEEeeCCCcccCHHHHHHHHHHhcccc
Confidence 84 335556666666653 3 356778885 33 4666677777654
No 176
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.11 E-value=0.0026 Score=63.30 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=70.6
Q ss_pred CcHHHHhhHHHH------hcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 164 PSEIQCVGIPAV------LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 164 pt~iQ~~~i~~i------~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
+++=|+.++..+ ..+..+++.|+-|+|||+.+ -.+... + ...+..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~--~~i~~~-----------------~---------~~~~~~~ 53 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI--KAIIDY-----------------L---------RSRGKKV 53 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH--HHHHHH-----------------h---------ccccceE
Confidence 466788888777 67889999999999998653 222211 1 1134568
Q ss_pred EEEcCcHHHHHHH--HHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEec
Q 014666 238 IVLCTTEESADQG--FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315 (420)
Q Consensus 238 Lil~PtreLa~Qi--~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 315 (420)
++++||---|..+ -..+..+. ++.+.. .. ...+ .+.+. ......+..+++||+|
T Consensus 54 ~~~a~tg~AA~~i~~G~T~hs~f---~i~~~~----~~-----------~~~~--~~~~~----~~~~~~l~~~~~lIiD 109 (364)
T PF05970_consen 54 LVTAPTGIAAFNIPGGRTIHSFF---GIPINN----NE-----------KSQC--KISKN----SRLRERLRKADVLIID 109 (364)
T ss_pred EEecchHHHHHhccCCcchHHhc---Cccccc----cc-----------cccc--ccccc----chhhhhhhhheeeecc
Confidence 9999998877664 11222211 111100 00 0000 11111 1112237889999999
Q ss_pred CcchhhccCCHHHHHHHHHHchh
Q 014666 316 EADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 316 EaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
|+- |+.......+...++.+..
T Consensus 110 Eis-m~~~~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 110 EIS-MVSADMLDAIDRRLRDIRK 131 (364)
T ss_pred ccc-chhHHHHHHHHHhhhhhhc
Confidence 998 4445566777777776654
No 177
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.03 E-value=0.0023 Score=53.39 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=13.4
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
+++-+++.|++|+|||....-
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHH
Confidence 456789999999999977433
No 178
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.99 E-value=0.0076 Score=60.19 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=39.2
Q ss_pred ChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc-chHHHHHHHHh
Q 014666 291 TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA-EMLGEQLSSLM 369 (420)
Q Consensus 291 TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~-~~v~~~~~~~~ 369 (420)
++..+...+.. +.+.++|+||++.++.. ...++..+...+.... ...--++.+|||.. ..+.+.+..|-
T Consensus 241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~--~~~~l~el~~~l~~~~----~~~e~~LVlsat~~~~~~~~~~~~~~ 310 (388)
T PRK12723 241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPK--DFMKLAEMKELLNACG----RDAEFHLAVSSTTKTSDVKEIFHQFS 310 (388)
T ss_pred cHHHHHHHHHH----hCCCCEEEEcCCCCCcc--CHHHHHHHHHHHHhcC----CCCeEEEEEcCCCCHHHHHHHHHHhc
Confidence 44555554432 35688999999998742 2223444444333211 01235688999986 45666666663
No 179
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.98 E-value=0.0014 Score=66.15 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=51.4
Q ss_pred CCcHHHHhhHHHHhcC-----CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 163 VPSEIQCVGIPAVLNG-----KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g-----~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.|+.=|-.||..+..| +.-.+-+.||||||++.+-.+-. .+.-+
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~-------------------------------~~rPt 60 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAK-------------------------------VQRPT 60 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHH-------------------------------hCCCe
Confidence 4666777777765543 56788899999999986655543 22348
Q ss_pred EEEcCcHHHHHHHHHHHHHhhcc
Q 014666 238 IVLCTTEESADQGFHMAKFISHC 260 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~ 260 (420)
||++|.+-||.|+|..++.|...
T Consensus 61 LV~AhNKTLAaQLy~Efk~fFP~ 83 (663)
T COG0556 61 LVLAHNKTLAAQLYSEFKEFFPE 83 (663)
T ss_pred EEEecchhHHHHHHHHHHHhCcC
Confidence 99999999999999999998654
No 180
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.94 E-value=0.012 Score=53.96 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=88.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhc---CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN---GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~---g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
+|+-..-|.+++=-+. .++ -..+.|......+.+ |.|.+.+.-+|.|||.+ ++|++..++.
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA------------- 67 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA------------- 67 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc-------------
Confidence 4555555666554433 244 578999999887764 68999999999999977 6777763321
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh-hccCCCceec--ccCCCChH----HHHH----HhcCCCcE
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI-SHCARLDSSM--ENGGVSSK----ALED----VSNAPIGM 287 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l-~~~~~i~~~~--~~gg~~~~----~~~~----~l~~~~~I 287 (420)
....-+.+++| +.|..|.++.+..- +...+-++.. +.-..... .... .....-.|
T Consensus 68 -------------dg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gi 133 (229)
T PF12340_consen 68 -------------DGSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGI 133 (229)
T ss_pred -------------CCCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 12233556666 56888888887654 3222222211 11111111 0111 11233469
Q ss_pred EEeChhHHHhchhc-------Ccc-----------cCCCceEEEecCcchhhc
Q 014666 288 LIATPSEVLQHIED-------RNV-----------SCDDIRYVVLDEADTLFD 322 (420)
Q Consensus 288 lV~TP~~L~~~l~~-------~~~-----------~l~~l~~lVlDEaD~~l~ 322 (420)
+|+||+.++.+.-. +.. .+.....=|+||+|..|.
T Consensus 134 ll~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 134 LLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred EEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 99999988665321 111 123344458999998875
No 181
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=96.91 E-value=0.0052 Score=67.47 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=95.1
Q ss_pred CCCcHHHHhhHHHHh----cCCcEEEEccCCCCchhH---hHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCC
Q 014666 162 FVPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLA---YLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH 234 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~----~g~dvl~~a~TGsGKTla---~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (420)
..+..+|..-+..++ .++++|+.-..|-|||+- |+--+.+.. ...|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~---------------------------~~~g 421 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSL---------------------------QIHG 421 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhh---------------------------hccC
Confidence 467888888877553 688999999999999964 444444311 1234
Q ss_pred CeEEEEcCcHHHH-HHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cC-----CCcEEEeChhHHHhchhcCcc
Q 014666 235 PRAIVLCTTEESA-DQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NA-----PIGMLIATPSEVLQHIEDRNV 304 (420)
Q Consensus 235 ~~~Lil~PtreLa-~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~-----~~~IlV~TP~~L~~~l~~~~~ 304 (420)
| .|||+|---+. .| ..+... +.+++++.+|.......++.. .. ..+++++|-..++.-- -
T Consensus 422 p-flvvvplst~~~W~--~ef~~w---~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk----~ 491 (1373)
T KOG0384|consen 422 P-FLVVVPLSTITAWE--REFETW---TDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK----A 491 (1373)
T ss_pred C-eEEEeehhhhHHHH--HHHHHH---hhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH----h
Confidence 4 46666754443 22 333333 377888888876655433322 11 3789999988775432 1
Q ss_pred cCCC--ceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec-ccchHHHHHH
Q 014666 305 SCDD--IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA-IAEMLGEQLS 366 (420)
Q Consensus 305 ~l~~--l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT-l~~~v~~~~~ 366 (420)
.|++ -.++++||||++-+ -...+...+..+.. +.+ ++++.| +-+.+.++..
T Consensus 492 ~L~~i~w~~~~vDeahrLkN--~~~~l~~~l~~f~~--------~~r-llitgTPlQNsikEL~s 545 (1373)
T KOG0384|consen 492 ELSKIPWRYLLVDEAHRLKN--DESKLYESLNQFKM--------NHR-LLITGTPLQNSLKELWS 545 (1373)
T ss_pred hhccCCcceeeecHHhhcCc--hHHHHHHHHHHhcc--------cce-eeecCCCccccHHHHHH
Confidence 2333 36899999999943 24444444554442 334 555566 5566776653
No 182
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=96.90 E-value=0.0069 Score=60.69 Aligned_cols=149 Identities=14% Similarity=0.095 Sum_probs=82.1
Q ss_pred CCcHHHHhhHH-HHhcCCcEEEEccCCCCchhHhH-HHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 163 VPSEIQCVGIP-AVLNGKSVVLSSGSGSGRTLAYL-LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 163 ~pt~iQ~~~i~-~i~~g~dvl~~a~TGsGKTla~~-lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
.+.|+|.+-+. ++..|.-+++.-..|-|||+-.+ +.-.- . ..--.|||
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yy-r-----------------------------aEwplliV 247 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYY-R-----------------------------AEWPLLIV 247 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHH-h-----------------------------hcCcEEEE
Confidence 56889999887 56688899999999999998643 32221 1 11227899
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchh
Q 014666 241 CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 241 ~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~ 320 (420)
||.--+- .....+..+.... ..+.++.++...... +.....|.|.+-..|..+ . ..+.-...++||+||.|.+
T Consensus 248 cPAsvrf-tWa~al~r~lps~-~pi~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l-~-~~l~~~~~~vvI~DEsH~L 320 (689)
T KOG1000|consen 248 CPASVRF-TWAKALNRFLPSI-HPIFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLL-H-DILKKEKYRVVIFDESHML 320 (689)
T ss_pred ecHHHhH-HHHHHHHHhcccc-cceEEEecccCCccc---cccCCeEEEEEHHHHHHH-H-HHHhcccceEEEEechhhh
Confidence 9964331 1222333332111 113344444332111 112245677776654322 1 1222344789999999966
Q ss_pred hccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 321 l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
-+ +--.....++..+.. -..+|++|.|.
T Consensus 321 k~-sktkr~Ka~~dllk~--------akhvILLSGTP 348 (689)
T KOG1000|consen 321 KD-SKTKRTKAATDLLKV--------AKHVILLSGTP 348 (689)
T ss_pred hc-cchhhhhhhhhHHHH--------hhheEEecCCc
Confidence 43 333335555554443 23677777775
No 183
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.82 E-value=0.021 Score=63.92 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHhhHHHHhc-CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhc
Q 014666 147 GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDE 225 (420)
Q Consensus 147 ~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~-g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~ 225 (420)
++++..+......++ .+++-|..++..+.. ++-+++.|+-|+|||.+.-. +...+
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~-~~~~~---------------------- 421 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKA-AREAW---------------------- 421 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHH-HHHHH----------------------
Confidence 455666655444454 689999999998764 56689999999999976432 33211
Q ss_pred ccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCccc
Q 014666 226 ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305 (420)
Q Consensus 226 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~ 305 (420)
...+.+++.++||---|..+.. .+|+....+ .+++-....+...
T Consensus 422 -----e~~G~~V~g~ApTgkAA~~L~e-------~~Gi~a~TI------------------------as~ll~~~~~~~~ 465 (1102)
T PRK13826 422 -----EAAGYRVVGGALAGKAAEGLEK-------EAGIQSRTL------------------------SSWELRWNQGRDQ 465 (1102)
T ss_pred -----HHcCCeEEEEcCcHHHHHHHHH-------hhCCCeeeH------------------------HHHHhhhccCccC
Confidence 0135679999999877766432 223332221 1111001112233
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
+..-.+||||||-.+ + ..++..++..... .+.++|++.=+
T Consensus 466 l~~~~vlVIDEAsMv-~---~~~m~~Ll~~~~~-------~garvVLVGD~ 505 (1102)
T PRK13826 466 LDNKTVFVLDEAGMV-A---SRQMALFVEAVTR-------AGAKLVLVGDP 505 (1102)
T ss_pred CCCCcEEEEECcccC-C---HHHHHHHHHHHHh-------cCCEEEEECCH
Confidence 566789999999944 2 5566667766643 35677776544
No 184
>PRK08181 transposase; Validated
Probab=96.75 E-value=0.023 Score=54.06 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.2
Q ss_pred HhcCCcEEEEccCCCCchhH
Q 014666 175 VLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla 194 (420)
+..++++++.||+|+|||..
T Consensus 103 ~~~~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHL 122 (269)
T ss_pred HhcCceEEEEecCCCcHHHH
Confidence 45788999999999999943
No 185
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.75 E-value=0.019 Score=47.98 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhH
Q 014666 178 GKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla 194 (420)
+..+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 77899999999999954
No 186
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.73 E-value=0.0044 Score=59.70 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=50.4
Q ss_pred CcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCc
Q 014666 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTT 243 (420)
Q Consensus 164 pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~Pt 243 (420)
+|+-|..++.. ....++|.|..|||||.+.+-=++..+.. . .....++|+|+.|
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~------------------~------~~~~~~Il~lTft 54 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYE------------------G------GVPPERILVLTFT 54 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHT------------------S------SSTGGGEEEEESS
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcc------------------c------cCChHHheecccC
Confidence 46788888887 67899999999999999865554442211 1 0133469999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 014666 244 EESADQGFHMAKFISHC 260 (420)
Q Consensus 244 reLa~Qi~~~~~~l~~~ 260 (420)
+..|..+...+......
T Consensus 55 ~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 55 NAAAQEMRERIRELLEE 71 (315)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 99999998888876543
No 187
>PRK14974 cell division protein FtsY; Provisional
Probab=96.67 E-value=0.017 Score=56.57 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=40.5
Q ss_pred CCceEEEecCcchhh-ccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 307 DDIRYVVLDEADTLF-DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l-~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
.+.++|+||.|.++- +.....++..+.+.+. ++.-+++++|+...+....++.|..
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~--------pd~~iLVl~a~~g~d~~~~a~~f~~ 277 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTK--------PDLVIFVGDALAGNDAVEQAREFNE 277 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhC--------CceEEEeeccccchhHHHHHHHHHh
Confidence 345799999998875 3345667777766553 4667888999998887777777664
No 188
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.65 E-value=0.013 Score=62.69 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=90.8
Q ss_pred hhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHH
Q 014666 170 VGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQ 249 (420)
Q Consensus 170 ~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Q 249 (420)
..+.++....-+++.+.||+|||.-|.--+|+.+++.. .....-+.+--|+|-.+.-
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-----------------------~g~~~na~v~qprrisais 441 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-----------------------NGASFNAVVSQPRRISAIS 441 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-----------------------ccccccceeccccccchHH
Confidence 33445666777899999999999999888888665421 1122346677788887766
Q ss_pred HHHHHHH-hhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHH
Q 014666 250 GFHMAKF-ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPE 328 (420)
Q Consensus 250 i~~~~~~-l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~ 328 (420)
+...+.. -+...+-.| |..........+.---|+.||-|-++..+.++ +..+.++++||.|... .. .+-
T Consensus 442 iaerva~er~e~~g~tv-----gy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherd-v~-~df 511 (1282)
T KOG0921|consen 442 LAERVANERGEEVGETC-----GYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERD-VD-TDF 511 (1282)
T ss_pred HHHHHHHhhHHhhcccc-----cccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhc-cc-hHH
Confidence 5554322 111111111 11111111111222359999999999999877 4567899999999542 22 333
Q ss_pred HHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 329 ISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 329 l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
+..+++-+.... .+..++++|||+.-+
T Consensus 512 ll~~lr~m~~ty-----~dl~v~lmsatIdTd 538 (1282)
T KOG0921|consen 512 VLIVLREMISTY-----RDLRVVLMSATIDTD 538 (1282)
T ss_pred HHHHHHhhhccc-----hhhhhhhhhcccchh
Confidence 444444333222 356677777777654
No 189
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.0066 Score=65.10 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=94.8
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.|+ .|+.+|.. -.+.-...-+....||-|||++..+|+.-. ...+..+.
T Consensus 77 lg~-~~~dVQli--G~i~lh~g~iaEM~TGEGKTL~atlp~yln----------------------------aL~gkgVh 125 (822)
T COG0653 77 LGM-RHFDVQLL--GGIVLHLGDIAEMRTGEGKTLVATLPAYLN----------------------------ALAGKGVH 125 (822)
T ss_pred cCC-ChhhHHHh--hhhhhcCCceeeeecCCchHHHHHHHHHHH----------------------------hcCCCCcE
Confidence 354 45666654 444444456788999999999999998641 12455588
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHH-hchhcC------cccCCCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL-QHIEDR------NVSCDDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~-~~l~~~------~~~l~~l~~ 311 (420)
+++-.--||..-...+..+..++|+.+++...++........ ..|||..+|...|- +.+... ......+.+
T Consensus 126 vVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~f 203 (822)
T COG0653 126 VVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNF 203 (822)
T ss_pred EeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCe
Confidence 999999999998899999999999999999999877655443 35899999998762 222211 112446889
Q ss_pred EEecCcchhh
Q 014666 312 VVLDEADTLF 321 (420)
Q Consensus 312 lVlDEaD~~l 321 (420)
-|+||+|-+|
T Consensus 204 aIvDEvDSIL 213 (822)
T COG0653 204 AIVDEVDSIL 213 (822)
T ss_pred EEEcchhhee
Confidence 9999999775
No 190
>PRK06526 transposase; Provisional
Probab=96.59 E-value=0.007 Score=57.07 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=18.7
Q ss_pred HHhcCCcEEEEccCCCCchhHhH
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~~ 196 (420)
.+..+.++++.||+|+|||....
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHH
Confidence 34577899999999999996543
No 191
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.52 E-value=0.0058 Score=54.10 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=69.5
Q ss_pred EEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC
Q 014666 182 VLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA 261 (420)
Q Consensus 182 l~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~ 261 (420)
|+.|+-|-||+.+..+.+...+. ....+++|.+|+.+-+..++..+..-....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~---------------------------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~ 53 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ---------------------------KGKIRILVTAPSPENVQTLFEFAEKGLKAL 53 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------------------------------EEEE-SS--S-HHHHHCC-------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---------------------------hcCceEEEecCCHHHHHHHHHHHHhhcccc
Confidence 57899999999887776654211 112469999999999999888877655544
Q ss_pred CCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhc
Q 014666 262 RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSAL 341 (420)
Q Consensus 262 ~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~ 341 (420)
+++......+.. .......+..|-.-.|..+...- ...++||||||=.+- .+.+..++.
T Consensus 54 ~~~~~~~~~~~~---~~~~~~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll~------- 112 (177)
T PF05127_consen 54 GYKEEKKKRIGQ---IIKLRFNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLLR------- 112 (177)
T ss_dssp ----------------------CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC-------
T ss_pred cccccccccccc---ccccccccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHHh-------
Confidence 443310000000 00001113345555665543321 235899999998663 556666653
Q ss_pred ccCCCCceEEEEeeccc---chHHHHHHHHhhcchhccCCCeeeeeeecccceE
Q 014666 342 KSNGQGFQTILVTAAIA---EMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEV 392 (420)
Q Consensus 342 ~~~~~~~Q~v~~SATl~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 392 (420)
....++||.|+. ..-+.+.-+|+............++.+.-+-+|-
T Consensus 113 -----~~~~vv~stTi~GYEGtGRgF~lkf~~~L~~~~~~~~~~~~L~~PIR~~ 161 (177)
T PF05127_consen 113 -----RFPRVVFSTTIHGYEGTGRGFSLKFLKQLKKHRPRNWRELELSEPIRYA 161 (177)
T ss_dssp -----CSSEEEEEEEBSSTTBB-HHHHHHHHCT----ST-TEEEEE--S-SSS-
T ss_pred -----hCCEEEEEeeccccccCCceeeeehhhhccccCCCccEEEEcCCCccCC
Confidence 345678888884 3456666666666544333245555554444443
No 192
>PRK04296 thymidine kinase; Provisional
Probab=96.42 E-value=0.011 Score=53.11 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=26.1
Q ss_pred eChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 290 ATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 290 ~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
..+..++..+.. .-.+.++||||||+.+- .+++..++..+.
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~ 103 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLD 103 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHH
Confidence 455556666554 23467899999997541 345666777654
No 193
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.41 E-value=0.025 Score=55.35 Aligned_cols=18 Identities=22% Similarity=0.612 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCchhH
Q 014666 177 NGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla 194 (420)
.+.++++.|+||+|||..
T Consensus 182 ~~~~Lll~G~~GtGKThL 199 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL 199 (329)
T ss_pred cCCcEEEECCCCCcHHHH
Confidence 468899999999999963
No 194
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.40 E-value=0.032 Score=55.33 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=54.4
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
+++-+.+.||||.|||.+.+--+..+.+ + .....-+||-+-|--.+.. ..++.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~----------------~---------~~~~kVaiITtDtYRIGA~--EQLk~ 254 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVM----------------L---------KKKKKVAIITTDTYRIGAV--EQLKT 254 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHh----------------h---------ccCcceEEEEeccchhhHH--HHHHH
Confidence 3788999999999999886543332110 0 1122346777776555433 55667
Q ss_pred hhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhH
Q 014666 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294 (420)
Q Consensus 257 l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~ 294 (420)
++...++.+..++...........+...-.|+|-|-|+
T Consensus 255 Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 255 YADIMGVPLEVVYSPKELAEAIEALRDCDVILVDTAGR 292 (407)
T ss_pred HHHHhCCceEEecCHHHHHHHHHHhhcCCEEEEeCCCC
Confidence 77777777766665544444444444433455666664
No 195
>PHA02533 17 large terminase protein; Provisional
Probab=96.39 E-value=0.048 Score=56.95 Aligned_cols=150 Identities=11% Similarity=0.010 Sum_probs=85.6
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.+.|+|...+..+..++-.++..+-..|||.+.+.-++.... . ..+..+++++|
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~-----------------~---------~~~~~v~i~A~ 112 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVC-----------------F---------NKDKNVGILAH 112 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHH-----------------h---------CCCCEEEEEeC
Confidence 578999999988766666678888889999887755543111 0 12457999999
Q ss_pred cHHHHHHHHHHHHHhhccCC--CceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchh
Q 014666 243 TEESADQGFHMAKFISHCAR--LDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~--i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~ 320 (420)
++.-|..++..++....... ++...... ......+.++..|.+.|-.. + ...=.++.++||||+|.+
T Consensus 113 ~~~QA~~vF~~ik~~ie~~P~l~~~~i~~~----~~~~I~l~NGS~I~~lss~~--~-----t~rG~~~~~liiDE~a~~ 181 (534)
T PHA02533 113 KASMAAEVLDRTKQAIELLPDFLQPGIVEW----NKGSIELENGSKIGAYASSP--D-----AVRGNSFAMIYIDECAFI 181 (534)
T ss_pred CHHHHHHHHHHHHHHHHhCHHHhhcceeec----CccEEEeCCCCEEEEEeCCC--C-----ccCCCCCceEEEeccccC
Confidence 99999998887776543221 11100000 00111224455554443221 1 111124678999999976
Q ss_pred hccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 321 l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
-+ +.+.+..+...+.. +...+++++|..-
T Consensus 182 ~~--~~e~~~ai~p~las------g~~~r~iiiSTp~ 210 (534)
T PHA02533 182 PN--FIDFWLAIQPVISS------GRSSKIIITSTPN 210 (534)
T ss_pred CC--HHHHHHHHHHHHHc------CCCceEEEEECCC
Confidence 32 33444444444432 1234566666664
No 196
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.33 E-value=0.018 Score=61.68 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=51.0
Q ss_pred CCcHHHHhhHHHHhcC-----CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 163 VPSEIQCVGIPAVLNG-----KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g-----~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.|+..|..+|..+.+| +..++.|-||||||+..+- ++.. .+..+
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~------------------------------~~~p~ 57 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQ------------------------------VNRPT 57 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHH------------------------------hCCCE
Confidence 5888999998876543 3667999999999987553 2220 12348
Q ss_pred EEEcCcHHHHHHHHHHHHHhhc
Q 014666 238 IVLCTTEESADQGFHMAKFISH 259 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~ 259 (420)
|||+|+..+|.|++..++.+..
T Consensus 58 Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 58 LVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred EEEECCHHHHHHHHHHHHHhCC
Confidence 9999999999999999998864
No 197
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.22 E-value=0.062 Score=57.49 Aligned_cols=164 Identities=17% Similarity=0.188 Sum_probs=99.5
Q ss_pred HHHHCCCCCCcHHHHhhHHHHhcCC--cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCC
Q 014666 155 AVEKMGLFVPSEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232 (420)
Q Consensus 155 ~l~~~g~~~pt~iQ~~~i~~i~~g~--dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (420)
.+.....+.+..-|.+.+..++++. -+++.|.-|-|||.+..|.+.. +.+ . .
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~-----------------~--------~ 259 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AAR-----------------L--------A 259 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHH-----------------h--------c
Confidence 3555555555555566666666543 5899999999999998877643 110 0 0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEE
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 312 (420)
...+++|.+||.+-+..++..+..-....|++-.......... ...-.....|=.-.|.... .. -++|
T Consensus 260 ~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~---------~~-~Dll 327 (758)
T COG1444 260 GSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ---------EE-ADLL 327 (758)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccce--eeecCCceeEEeeCcchhc---------cc-CCEE
Confidence 1357999999999999998888776666665433322211000 0000111223334444321 11 6799
Q ss_pred EecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc---hHHHHHHHHhhcc
Q 014666 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE---MLGEQLSSLMECL 372 (420)
Q Consensus 313 VlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~---~v~~~~~~~~~~~ 372 (420)
|||||=.+ .-+-+..++. ..+.++||.|+.. .-+.|.-+|+...
T Consensus 328 vVDEAAaI----plplL~~l~~------------~~~rv~~sTTIhGYEGtGRgF~lkf~~~l 374 (758)
T COG1444 328 VVDEAAAI----PLPLLHKLLR------------RFPRVLFSTTIHGYEGTGRGFSLKFLARL 374 (758)
T ss_pred EEehhhcC----ChHHHHHHHh------------hcCceEEEeeecccccCChHHHHHHHHHh
Confidence 99999866 3566666665 3477999999853 4556666666654
No 198
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.19 E-value=0.007 Score=57.35 Aligned_cols=50 Identities=18% Similarity=0.391 Sum_probs=34.7
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhh
Q 014666 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQ 205 (420)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~ 205 (420)
+..+.+|++|++|+-+.+.+.. ..-=+++.+|||||||.. +-.++.+|.+
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 3456788889988888774332 112389999999999976 4556665544
No 199
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.18 E-value=0.02 Score=54.39 Aligned_cols=53 Identities=13% Similarity=0.364 Sum_probs=35.5
Q ss_pred cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHH
Q 014666 303 NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 303 ~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
......++.+||||||.|-.. -|..+..+++... ....+++...-+..-+..+
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s--------~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSD-AQAALRRTMEDFS--------RTTRFILICNYLSRIIRPL 176 (346)
T ss_pred CCCCCcceEEEEechhhhhHH-HHHHHHHHHhccc--------cceEEEEEcCChhhCChHH
Confidence 344667899999999999633 4777777777644 2567777766654433333
No 200
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.059 Score=53.68 Aligned_cols=74 Identities=7% Similarity=0.240 Sum_probs=40.2
Q ss_pred EeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc-chHHHHHHH
Q 014666 289 IATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA-EMLGEQLSS 367 (420)
Q Consensus 289 V~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~-~~v~~~~~~ 367 (420)
+.+|..+.+.+..-.- ..+.++|+||-+-+... -...+..+...+.... +..-.+.+|||.. .++.+++..
T Consensus 302 ~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~k--d~~lm~EL~~~lk~~~-----PdevlLVLsATtk~~d~~~i~~~ 373 (436)
T PRK11889 302 VRDEAAMTRALTYFKE-EARVDYILIDTAGKNYR--ASETVEEMIETMGQVE-----PDYICLTLSASMKSKDMIEIITN 373 (436)
T ss_pred cCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCc--CHHHHHHHHHHHhhcC-----CCeEEEEECCccChHHHHHHHHH
Confidence 3467777666643111 12467888888876532 1334444444443211 2333566888765 466777766
Q ss_pred Hhh
Q 014666 368 LME 370 (420)
Q Consensus 368 ~~~ 370 (420)
|-.
T Consensus 374 F~~ 376 (436)
T PRK11889 374 FKD 376 (436)
T ss_pred hcC
Confidence 654
No 201
>PRK06893 DNA replication initiation factor; Validated
Probab=96.12 E-value=0.018 Score=53.49 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=29.8
Q ss_pred CCceEEEecCcchhhccC-CHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 307 DDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~-~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
.+.++|||||+|.+.... +...+..++..+.. .+.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~-------~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE-------QGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH-------cCCcEEEEeCCCChH
Confidence 467899999999885332 23345555554432 245677888887554
No 202
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.12 E-value=0.028 Score=58.11 Aligned_cols=150 Identities=10% Similarity=0.043 Sum_probs=84.0
Q ss_pred HHHHhhHHHHhc-----C----CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCe
Q 014666 166 EIQCVGIPAVLN-----G----KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPR 236 (420)
Q Consensus 166 ~iQ~~~i~~i~~-----g----~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 236 (420)
|||.-.+-.++. | +.+++.-+-|.|||.....-++-.+.- ....+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~------------------------~g~~~~~ 56 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL------------------------DGEPGAE 56 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc------------------------CCccCce
Confidence 678877776662 2 357888899999997655444332210 0224678
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC--cccCCCceEEEe
Q 014666 237 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--NVSCDDIRYVVL 314 (420)
Q Consensus 237 ~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~--~~~l~~l~~lVl 314 (420)
+++++++++-|..++..+................ . .... ..-.|..-..+.+...+.+. ..+=.+..++|+
T Consensus 57 i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~~~--~----~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~ 129 (477)
T PF03354_consen 57 IYCAANTRDQAKIVFDEAKKMIEASPELRKRKKP--K----IIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIF 129 (477)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhChhhccchhh--h----hhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEE
Confidence 9999999999999999988876542211100000 0 0000 11234433334444444332 222235789999
Q ss_pred cCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 315 DEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 315 DEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
||+|.+-+......|..-+.. ..+.++++.|.
T Consensus 130 DE~h~~~~~~~~~~l~~g~~~---------r~~pl~~~IST 161 (477)
T PF03354_consen 130 DELHAHKDDELYDALESGMGA---------RPNPLIIIIST 161 (477)
T ss_pred eCCCCCCCHHHHHHHHhhhcc---------CCCceEEEEeC
Confidence 999988543333333332222 24667777754
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.06 E-value=0.017 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=17.4
Q ss_pred CCcEEEEccCCCCchhHhHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~ 199 (420)
+..+++.+|+|+|||.....-+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~ 23 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA 23 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 5679999999999997754433
No 204
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.01 E-value=0.1 Score=56.38 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHH---CCCCCCcHHHHhhHHHHh--cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHh
Q 014666 147 GLKAEMIKAVEK---MGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQML 221 (420)
Q Consensus 147 ~l~~~l~~~l~~---~g~~~pt~iQ~~~i~~i~--~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l 221 (420)
.++..|+..|+- .|+..++..-.+.|.... .|--+|+.-..|-||||-. +..++.++
T Consensus 660 qV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQV-vtflhTvL----------------- 721 (1567)
T KOG1015|consen 660 QVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQV-VTFLHTVL----------------- 721 (1567)
T ss_pred hccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehh-hHHHHHHH-----------------
Confidence 355555555532 233333333334444332 2455777777899999863 33333221
Q ss_pred hhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC----CCceecccCCCChHHHHHH---hcCCCcEEEeChhH
Q 014666 222 RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA----RLDSSMENGGVSSKALEDV---SNAPIGMLIATPSE 294 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~----~i~~~~~~gg~~~~~~~~~---l~~~~~IlV~TP~~ 294 (420)
... .....+||||+|-.-+ ...++.|..+.... .+.|..+..-......... |...-.|.|--...
T Consensus 722 ~c~------klg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdm 794 (1567)
T KOG1015|consen 722 LCD------KLGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDM 794 (1567)
T ss_pred Hhh------ccCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHH
Confidence 111 1234579999996544 44556666665431 3444443322222222222 22222333333333
Q ss_pred HHhchhcCc-------------ccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 295 VLQHIEDRN-------------VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 295 L~~~l~~~~-------------~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
+..+-..+. +.-..-++||.||+|.+- .-...+...+..+.. .+++++....|-+++
T Consensus 795 yRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLK--Neksa~Skam~~irt--------kRRI~LTGTPLQNNL 864 (1567)
T KOG1015|consen 795 YRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILK--NEKSAVSKAMNSIRT--------KRRIILTGTPLQNNL 864 (1567)
T ss_pred HHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhc--cchHHHHHHHHHHHh--------heeEEeecCchhhhh
Confidence 333222111 111335899999999773 335556666666652 445554444455555
Q ss_pred HHH
Q 014666 362 GEQ 364 (420)
Q Consensus 362 ~~~ 364 (420)
.+.
T Consensus 865 mEY 867 (1567)
T KOG1015|consen 865 MEY 867 (1567)
T ss_pred HHH
Confidence 543
No 205
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.022 Score=56.59 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=35.1
Q ss_pred cccccCCCCHHHHHHHHHC-----CCCCCcH---HHHhhH----HH-------HhcCCcEEEEccCCCCchhHhHHHHH
Q 014666 141 SSFQELGLKAEMIKAVEKM-----GLFVPSE---IQCVGI----PA-------VLNGKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~-----g~~~pt~---iQ~~~i----~~-------i~~g~dvl~~a~TGsGKTla~~lp~l 200 (420)
..+...|+++.+.+.|-+. +...+.. +....+ +. +..|..+++.+|||+|||.....-+.
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456678888887776442 1111212 222222 11 12367899999999999988655443
No 206
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.93 E-value=0.13 Score=52.90 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.8
Q ss_pred CCcEEEEccCCCCchhHhHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~ 199 (420)
|.-+++.||||+|||.+...-+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4568999999999998866544
No 207
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.90 E-value=0.028 Score=60.75 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=75.8
Q ss_pred CCCcHHHHhhHHHHhcCCc-EEEEccCCCCchhHhHHHH--HHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 162 FVPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPL--VQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~d-vl~~a~TGsGKTla~~lp~--l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
..+..-|+.|+-.++..+| .++.|-+|+|||...+..+ |. ..+.++|
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~------------------------------~~gkkVL 717 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILV------------------------------ALGKKVL 717 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHH------------------------------HcCCeEE
Confidence 4678889999998887766 5788889999997654332 22 1355677
Q ss_pred EEcCcHHHHHHHHHHHHHhhccC---C----C----ceecccCCCC--hHHHHHHhcCCCcEEEeChhHHHhchhcCccc
Q 014666 239 VLCTTEESADQGFHMAKFISHCA---R----L----DSSMENGGVS--SKALEDVSNAPIGMLIATPSEVLQHIEDRNVS 305 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~---~----i----~~~~~~gg~~--~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~ 305 (420)
+.+=|..-+.-|.-.+..+..+. | + +-.++..+.+ ........-+.+.||.||--.+.+.|- .
T Consensus 718 LtsyThsAVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~ 793 (1100)
T KOG1805|consen 718 LTSYTHSAVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----V 793 (1100)
T ss_pred EEehhhHHHHHHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----h
Confidence 77777766555544444332110 0 0 0001111111 111222334567899999877765543 3
Q ss_pred CCCceEEEecCcchhhc
Q 014666 306 CDDIRYVVLDEADTLFD 322 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~ 322 (420)
...++|.|||||-+++.
T Consensus 794 ~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQILL 810 (1100)
T ss_pred ccccCEEEEcccccccc
Confidence 35589999999998853
No 208
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.01 Score=60.85 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=42.6
Q ss_pred cCCCcEEEeChhHHHhchhcC---cc---cCCCceEE-EecCcchhhccC---CHHH------HHHH-HHHchhhhcccC
Q 014666 282 NAPIGMLIATPSEVLQHIEDR---NV---SCDDIRYV-VLDEADTLFDRG---FGPE------ISKI-LNPLKDSALKSN 344 (420)
Q Consensus 282 ~~~~~IlV~TP~~L~~~l~~~---~~---~l~~l~~l-VlDEaD~~l~~~---~~~~------l~~I-l~~l~~~~~~~~ 344 (420)
..++.|+.+|...|...+.+. .+ ++.+.++| +-||||++-... ..++ ++.. +..+. .
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~------~ 152 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE------Q 152 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh------c
Confidence 356889999999998777543 22 35555555 459999984321 1111 1111 11121 1
Q ss_pred CCCceEEEEeecccc
Q 014666 345 GQGFQTILVTAAIAE 359 (420)
Q Consensus 345 ~~~~Q~v~~SATl~~ 359 (420)
.++--++.||||.|.
T Consensus 153 nkd~~~lef~at~~k 167 (812)
T COG3421 153 NKDNLLLEFSATIPK 167 (812)
T ss_pred CCCceeehhhhcCCc
Confidence 235668889999994
No 209
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.81 E-value=0.074 Score=53.52 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=80.4
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHH-HHHHHHHHHHHhh
Q 014666 180 SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEE-SADQGFHMAKFIS 258 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~Ptre-La~Qi~~~~~~l~ 258 (420)
-.++.+..|||||.+.++-++..++.. ..+.++|++-+|.. |..-++..+....
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-------------------------~~~~~~~~~r~~~~sl~~sv~~~l~~~i 57 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-------------------------KKQQNILAARKVQNSIRDSVFKDIENLL 57 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-------------------------CCCcEEEEEehhhhHHHHHHHHHHHHHH
Confidence 367889999999999888777644321 13467899999987 4455777776655
Q ss_pred ccCCCceecccCCCChHHHHHHhcC-CCcEEEeCh-hHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHc
Q 014666 259 HCARLDSSMENGGVSSKALEDVSNA-PIGMLIATP-SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336 (420)
Q Consensus 259 ~~~~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~TP-~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l 336 (420)
...++....-...... .. .+.. +..|++..- ..... +. ....+.++.+|||..+- ...+..++..|
T Consensus 58 ~~~g~~~~~~~~~~~~--~i-~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~----~~~~~~l~~rl 125 (396)
T TIGR01547 58 SIEGINYEFKKSKSSM--EI-KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLT----FEDIKELIPRL 125 (396)
T ss_pred HHcCChhheeecCCcc--EE-EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcC----HHHHHHHHHHh
Confidence 5445432211111110 00 1112 334444332 11111 11 12336899999999873 34566666655
Q ss_pred hhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 337 KDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 337 ~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
.. + + ..+.+++|.+......-+...|+.
T Consensus 126 r~----~-~-~~~~i~~t~NP~~~~~w~~~~f~~ 153 (396)
T TIGR01547 126 RE----T-G-GKKFIIFSSNPESPLHWVKKRFIE 153 (396)
T ss_pred hc----c-C-CccEEEEEcCcCCCccHHHHHHHh
Confidence 42 1 1 122577888875533334444444
No 210
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.81 E-value=0.044 Score=56.09 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=30.3
Q ss_pred CCceEEEecCcchhhcc-CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 307 DDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~-~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
.++++|||||+|.+-.. ...+.+..++..+.. .+.|+|+.|-..|..+.
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~-------~~k~iIltsd~~P~~l~ 254 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE-------NDKQLFFSSDKSPELLN 254 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHH-------cCCcEEEECCCCHHHHh
Confidence 46789999999977422 134556666666543 24477666666665553
No 211
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.80 E-value=0.06 Score=46.10 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=14.9
Q ss_pred EEEEccCCCCchhHhHHHH
Q 014666 181 VVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 181 vl~~a~TGsGKTla~~lp~ 199 (420)
+++.|++|+|||.....-+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~ 20 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLA 20 (165)
T ss_pred eeEeCCCCCCHHHHHHHHH
Confidence 6889999999997654443
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.77 E-value=0.11 Score=48.76 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=29.0
Q ss_pred CCCceEEEecCcchhhccCCHH-HHHHHHHHchhhhcccCCCCceEEEEeecccchHHHH
Q 014666 306 CDDIRYVVLDEADTLFDRGFGP-EISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~-~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
+.++++|||||++......+.. .+..|+..-.. ....|++.|---+.++...
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~-------~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSS-------SKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHh-------CCCCEEEeCCCCHHHHHHH
Confidence 4568899999999775333333 23345543211 2456666665555555443
No 213
>PRK05642 DNA replication initiation factor; Validated
Probab=95.77 E-value=0.028 Score=52.36 Aligned_cols=44 Identities=23% Similarity=0.484 Sum_probs=26.5
Q ss_pred CCceEEEecCcchhhcc-CCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 307 DDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~-~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
.++++||||++|.+... .+...+-.++..+.. .+.+ ++++++.+
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~-------~g~~-ilits~~~ 140 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRD-------SGRR-LLLAASKS 140 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHh-------cCCE-EEEeCCCC
Confidence 35578999999977433 234456677766543 2345 45555543
No 214
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.74 E-value=0.025 Score=60.65 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=50.9
Q ss_pred CCcHHHHhhHHHHhcC-----CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 163 VPSEIQCVGIPAVLNG-----KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g-----~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.|++.|..++..+.++ +..++.+.+||||++.++- ++.. .+..+
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~------------------------------~~r~v 60 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIAR------------------------------LQRPT 60 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHH------------------------------hCCCE
Confidence 6999999999876533 2577999999999987542 2220 12349
Q ss_pred EEEcCcHHHHHHHHHHHHHhhc
Q 014666 238 IVLCTTEESADQGFHMAKFISH 259 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~ 259 (420)
|||+|+...|.|++..+..+..
T Consensus 61 LIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 61 LVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred EEEECCHHHHHHHHHHHHHhcC
Confidence 9999999999999999988853
No 215
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.72 E-value=0.098 Score=53.13 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~l 197 (420)
|+.+++.+|||+|||.+.+-
T Consensus 221 ~~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56789999999999976543
No 216
>PRK08727 hypothetical protein; Validated
Probab=95.72 E-value=0.051 Score=50.56 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.5
Q ss_pred CcEEEEccCCCCchhH
Q 014666 179 KSVVLSSGSGSGRTLA 194 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla 194 (420)
.-+++.|++|+|||-.
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3499999999999943
No 217
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.71 E-value=0.064 Score=52.30 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=35.1
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHH-HHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 151 EMIKAVEKMGLFVPSEIQCVGIP-AVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 151 ~l~~~l~~~g~~~pt~iQ~~~i~-~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
..+..|...|+ +++.|...+. ++..+.+++++|+|||||| +++-.++.
T Consensus 122 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~ 170 (319)
T PRK13894 122 FTLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIIN 170 (319)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHH
Confidence 34555666675 5677887777 4667899999999999999 44555554
No 218
>PRK08116 hypothetical protein; Validated
Probab=95.71 E-value=0.18 Score=47.97 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
.-+++.|++|+|||...
T Consensus 115 ~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA 131 (268)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34999999999999653
No 219
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=95.67 E-value=0.02 Score=58.34 Aligned_cols=100 Identities=16% Similarity=0.157 Sum_probs=63.4
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhc
Q 014666 180 SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~ 259 (420)
=++-++||.||||.-.+--+-+ ...+++--|-|-||..|++.+...
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~--------------------------------aksGvycGPLrLLA~EV~~r~na~-- 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKS--------------------------------AKSGVYCGPLRLLAHEVYDRLNAL-- 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhh--------------------------------hccceecchHHHHHHHHHHHhhhc--
Confidence 3677899999999764332221 234889999999999999988886
Q ss_pred cCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCC
Q 014666 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 325 (420)
Q Consensus 260 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~ 325 (420)
|+.|-+++|......... .+.++.+=||-+.+ .. -..+++.||||+..|-|...
T Consensus 239 --gipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~-------sv-~~~yeVAViDEIQmm~Dp~R 292 (700)
T KOG0953|consen 239 --GIPCDLLTGEERRFVLDN--GNPAQHVSCTVEMV-------SV-NTPYEVAVIDEIQMMRDPSR 292 (700)
T ss_pred --CCCccccccceeeecCCC--CCcccceEEEEEEe-------ec-CCceEEEEehhHHhhcCccc
Confidence 556666666432211110 12245555555432 11 23467889999988877653
No 220
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.61 E-value=0.03 Score=56.66 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=25.0
Q ss_pred CcHHHHhhHHHHhcCCcEEEEccCCCCchhHhH
Q 014666 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 164 pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~ 196 (420)
+-......+..+..++++++.+++|+|||....
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 333444556677789999999999999997653
No 221
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.59 E-value=0.11 Score=45.97 Aligned_cols=31 Identities=29% Similarity=0.286 Sum_probs=21.1
Q ss_pred CCceEEEecCcchhhc---cCCHHHHHHHHHHch
Q 014666 307 DDIRYVVLDEADTLFD---RGFGPEISKILNPLK 337 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~---~~~~~~l~~Il~~l~ 337 (420)
.+.+++||||...+++ ......+..++..+.
T Consensus 94 ~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~ 127 (187)
T cd01124 94 FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALK 127 (187)
T ss_pred hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHH
Confidence 3568999999998887 333445555665554
No 222
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.55 E-value=0.088 Score=47.61 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=30.9
Q ss_pred CceEEEecCcchhh-ccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 308 DIRYVVLDEADTLF-DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 308 ~l~~lVlDEaD~~l-~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
+.++++||=+-+.. +.....++..++..+. +.--.+.+|||...+....+..+..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~--------~~~~~LVlsa~~~~~~~~~~~~~~~ 138 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALN--------PDEVHLVLSATMGQEDLEQALAFYE 138 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS--------SSEEEEEEEGGGGGHHHHHHHHHHH
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcC--------CccceEEEecccChHHHHHHHHHhh
Confidence 35566666654332 1123455666666553 2456788899988766555555544
No 223
>PRK06921 hypothetical protein; Provisional
Probab=95.47 E-value=0.24 Score=47.06 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCchhH
Q 014666 177 NGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla 194 (420)
.+..+++.|++|+|||..
T Consensus 116 ~~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCCeEEEECCCCCcHHHH
Confidence 467899999999999954
No 224
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.44 E-value=0.072 Score=49.08 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=33.4
Q ss_pred CCCceEEEecCcchhhccC-CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 306 CDDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~-~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
+...++||||++|.+-... ....+-.++..+.. .+.|+|+.|...|.++.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~-------~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIE-------SGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH-------TTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHh-------hCCeEEEEeCCCCcccc
Confidence 3568899999999885432 34455566666553 35688888878887655
No 225
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.43 E-value=0.03 Score=61.08 Aligned_cols=81 Identities=11% Similarity=0.028 Sum_probs=61.8
Q ss_pred CcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH--H
Q 014666 285 IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML--G 362 (420)
Q Consensus 285 ~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v--~ 362 (420)
..|+++||..|..-|-.+.+++..|..|||||||++....-...|-.+++.-+ ...-+.+|||...... .
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n--------~~gfIkafSdsP~~~~~g~ 79 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKN--------KTGFIKAFSDNPEAFTMGF 79 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhC--------CCcceEEecCCCcccccch
Confidence 47999999999888888999999999999999999976655555555555433 3667999999987643 2
Q ss_pred HHHHHHhhcch
Q 014666 363 EQLSSLMECLE 373 (420)
Q Consensus 363 ~~~~~~~~~~~ 373 (420)
.-+...|+++.
T Consensus 80 ~~l~~vmk~L~ 90 (814)
T TIGR00596 80 SPLETKMRNLF 90 (814)
T ss_pred HHHHHHHHHhC
Confidence 33456666653
No 226
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.41 E-value=0.087 Score=49.83 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
..++++.||+|+|||...
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 357999999999999764
No 227
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.36 E-value=0.14 Score=49.00 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=20.5
Q ss_pred CCCceEEEecCcchhhccCCHH--HHHHHHHHch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGP--EISKILNPLK 337 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~--~l~~Il~~l~ 337 (420)
--.+++|||||+|.+|...... .+...++.|.
T Consensus 143 ~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~ 176 (302)
T PF05621_consen 143 RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG 176 (302)
T ss_pred HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh
Confidence 3458999999999998554322 2334444443
No 228
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=95.35 E-value=0.039 Score=59.81 Aligned_cols=166 Identities=14% Similarity=0.204 Sum_probs=90.2
Q ss_pred CCcHHHHhhHHHHh----cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~----~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.+-++|..-+..+. ++-+-|+.-.+|-|||.. .|.++.+++... ...|| -|
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K-----------------------~~~GP-~L 448 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK-----------------------QMQGP-FL 448 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc-----------------------ccCCC-eE
Confidence 56677777766533 345678889999999976 333333332211 22455 47
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHH---HHHHhcCCCcEEEeChhHHHhchhcCcccCCCc--eEEE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA---LEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI--RYVV 313 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~---~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l--~~lV 313 (420)
||||+--|.+=. ..+..++. .+..+ .|.|..... +........+||++|-+.+.. ..-.|+.| .|+|
T Consensus 449 vivPlstL~NW~-~Ef~kWaP--Sv~~i-~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMI 520 (1157)
T KOG0386|consen 449 IIVPLSTLVNWS-SEFPKWAP--SVQKI-QYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMI 520 (1157)
T ss_pred EeccccccCCch-hhcccccc--ceeee-eeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCccee
Confidence 888988886432 22333221 23333 333433221 122233558999999876644 22224444 5799
Q ss_pred ecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc----chHHHHHHHHhhc
Q 014666 314 LDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA----EMLGEQLSSLMEC 371 (420)
Q Consensus 314 lDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~----~~v~~~~~~~~~~ 371 (420)
|||.|+|- ....-+...+. ..+ .....++++.|.- ++++.+++-++.+
T Consensus 521 IDEGHRmK--Na~~KLt~~L~---t~y-----~~q~RLLLTGTPLQN~LpELWaLLNFlLP~ 572 (1157)
T KOG0386|consen 521 IDEGHRMK--NAICKLTDTLN---THY-----RAQRRLLLTGTPLQNNLPELWALLNFLLPN 572 (1157)
T ss_pred eccccccc--chhhHHHHHhh---ccc-----cchhhhhhcCChhhhccHHHHHHHHHhccc
Confidence 99999993 33333443333 211 2344567777753 3455555544443
No 229
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.32 E-value=0.089 Score=53.76 Aligned_cols=52 Identities=12% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCceEEEecCcchhhccC-CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHH
Q 014666 307 DDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 365 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~-~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~ 365 (420)
.++++|+|||+|.+.... ....+..++..+.. .+.|+|+.|.+.|.++..+.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~-------~~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHT-------EGKLIVISSTCAPQDLKAME 253 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHH-------CCCcEEEecCCCHHHHhhhH
Confidence 457899999999875432 34455556555432 24577776666676665443
No 230
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.30 E-value=0.095 Score=48.09 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++.|++|+|||...
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999654
No 231
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.18 E-value=0.18 Score=58.54 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=45.7
Q ss_pred CCcHHHHhhHHHHhcC--CcEEEEccCCCCchhHhH--HHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYL--LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~--lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.+++-|..++..++.. +-+++++..|+|||.+.- +-++..+. ...+..++
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~--------------------------e~~g~~V~ 888 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP--------------------------ESERPRVV 888 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh--------------------------hccCceEE
Confidence 6899999999998854 679999999999997742 22222110 11346788
Q ss_pred EEcCcHHHHHHHH
Q 014666 239 VLCTTEESADQGF 251 (420)
Q Consensus 239 il~PtreLa~Qi~ 251 (420)
.++||---|..+.
T Consensus 889 glAPTgkAa~~L~ 901 (1623)
T PRK14712 889 GLGPTHRAVGEMR 901 (1623)
T ss_pred EEechHHHHHHHH
Confidence 8999988887753
No 232
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.18 E-value=0.13 Score=50.11 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=32.1
Q ss_pred HHHHHCCCCCCcHHHHhhHH-HHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 154 KAVEKMGLFVPSEIQCVGIP-AVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 154 ~~l~~~g~~~pt~iQ~~~i~-~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
..+...|. +++.|...|. ++..+.+++++|+||||||... -.++.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~ 166 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIA 166 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHH
Confidence 34455564 5677877776 4667889999999999999653 34444
No 233
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.18 E-value=0.086 Score=49.09 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCCchhH
Q 014666 178 GKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla 194 (420)
+..+++.||+|+|||..
T Consensus 45 ~~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL 61 (235)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999954
No 234
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.13 E-value=0.14 Score=51.72 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.3
Q ss_pred cEEEEccCCCCchhHhH
Q 014666 180 SVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~ 196 (420)
-+++++++|+|||.+..
T Consensus 102 vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCT 118 (429)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997654
No 235
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.06 E-value=0.052 Score=44.90 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=13.7
Q ss_pred EEEEccCCCCchhHhHH
Q 014666 181 VVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 181 vl~~a~TGsGKTla~~l 197 (420)
+++.||.|+|||...-.
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 68999999999976433
No 236
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.02 E-value=0.089 Score=53.16 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=27.7
Q ss_pred CceEEEecCcchhhccC-CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 308 DIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~-~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
++++|||||+|.+.... ....+-.++..+.. .+.++|+.|...|..+..
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~-------~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHE-------NGKQIVLTSDRPPKELPG 248 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH-------CCCCEEEecCCCHHHHhh
Confidence 35699999999875332 22335555555432 245666555444554443
No 237
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.02 E-value=0.24 Score=59.49 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=79.7
Q ss_pred CCcHHHHhhHHHHhcC--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
.+++-|..++..++.. +=.++.++.|+|||.+.- .++..+ ...+.+++++
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~---------------------------~~~G~~V~~l 480 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLA---------------------------SEQGYEIQII 480 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHH---------------------------HhcCCeEEEE
Confidence 5789999999988765 568999999999997632 222211 1135679999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchh
Q 014666 241 CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 241 ~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~ 320 (420)
+||..-|.++....-. ....+ ......+..+ .-..|-.+++ .....+..-++||||||-.+
T Consensus 481 APTgrAA~~L~e~~g~-------~A~Ti------~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl 541 (1960)
T TIGR02760 481 TAGSLSAQELRQKIPR-------LASTF------ITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKL 541 (1960)
T ss_pred eCCHHHHHHHHHHhcc-------hhhhH------HHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCC
Confidence 9999877665443211 11000 0000111110 1112333333 12233566789999999954
Q ss_pred hccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 321 l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
- ..++..++..... .+.++|++.=+
T Consensus 542 ~----~~~~~~Ll~~a~~-------~garvVlvGD~ 566 (1960)
T TIGR02760 542 S----NNELLKLIDKAEQ-------HNSKLILLNDS 566 (1960)
T ss_pred C----HHHHHHHHHHHhh-------cCCEEEEEcCh
Confidence 2 5567777765542 36788888654
No 238
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.01 E-value=0.062 Score=58.45 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=50.2
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
..+++-|..++.+. ...++|.|..|||||.+..-=+.. ++.. . .....++|+|+
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~-Li~~-----------------~------~v~p~~IL~lT 56 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAW-LLSV-----------------E------NASPHSIMAVT 56 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHH-HHHc-----------------C------CCCHHHeEeee
Confidence 35889999988653 458999999999999884333332 2110 0 11234699999
Q ss_pred CcHHHHHHHHHHHHHhh
Q 014666 242 TTEESADQGFHMAKFIS 258 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l~ 258 (420)
-|+..|..+...+..+.
T Consensus 57 FTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 57 FTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999888887764
No 239
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.99 E-value=0.26 Score=57.97 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=45.1
Q ss_pred CCcHHHHhhHHHHhcC--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
.+++.|..++..++.+ +-+++++..|+|||.+.- .++..+.. + ....+..++.+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~---------------l--------~~~~~~~V~gl 1022 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNT---------------L--------PESERPRVVGL 1022 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHH---------------h--------hcccCceEEEE
Confidence 6899999999998875 568999999999997632 22221100 0 01134568889
Q ss_pred cCcHHHHHHHH
Q 014666 241 CTTEESADQGF 251 (420)
Q Consensus 241 ~PtreLa~Qi~ 251 (420)
+||---|..+.
T Consensus 1023 APTgrAAk~L~ 1033 (1747)
T PRK13709 1023 GPTHRAVGEMR 1033 (1747)
T ss_pred CCcHHHHHHHH
Confidence 99988877643
No 240
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.94 E-value=0.51 Score=50.12 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=83.4
Q ss_pred CcHHHHhhHHH---HhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 164 PSEIQCVGIPA---VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 164 pt~iQ~~~i~~---i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
|.|.=.+-|.. .++.+--++.+|-|.|||.+..+.+...+. ..+.+++|.
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~---------------------------f~Gi~IlvT 222 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMIS---------------------------FLEIDIVVQ 222 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHH---------------------------hcCCeEEEE
Confidence 44444444443 344566788899999999886655543110 024679999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCC--------ceecccCCCChHHHHHHhcCCCcEEEeChhHHH------hchh--cCcc
Q 014666 241 CTTEESADQGFHMAKFISHCARL--------DSSMENGGVSSKALEDVSNAPIGMLIATPSEVL------QHIE--DRNV 304 (420)
Q Consensus 241 ~PtreLa~Qi~~~~~~l~~~~~i--------~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~------~~l~--~~~~ 304 (420)
+|...-+.+++..+..+....+. ++....||. -.|.+..|.... .+.. .+..
T Consensus 223 AH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s~ 290 (752)
T PHA03333 223 AQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNAA 290 (752)
T ss_pred CCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccCCCc
Confidence 99999999999888777653321 111111111 112222221111 0000 1112
Q ss_pred cCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 305 SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 305 ~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
.-...++||+|||..+- .+.+..|+-.+.. .+..++++|.+...
T Consensus 291 RG~~~DLLIVDEAAfI~----~~~l~aIlP~l~~-------~~~k~IiISS~~~~ 334 (752)
T PHA03333 291 RGQNPDLVIVDEAAFVN----PGALLSVLPLMAV-------KGTKQIHISSPVDA 334 (752)
T ss_pred CCCCCCEEEEECcccCC----HHHHHHHHHHHcc-------CCCceEEEeCCCCc
Confidence 22346899999999774 3566667766653 25677888888754
No 241
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.93 E-value=0.26 Score=50.37 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=31.8
Q ss_pred CceEEEecCcchhhccC-CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHH
Q 014666 308 DIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~-~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~ 366 (420)
+.++|||||+|.+++.. ....+..++..+.. .+.|+|+.|..-|.++..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~-------~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD-------SGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH-------cCCeEEEECCCCHHHHHHHHH
Confidence 46799999999886543 23455566655543 245666665555656555433
No 242
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.87 E-value=0.24 Score=50.84 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=27.9
Q ss_pred CceEEEecCcchhhccC-CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 308 DIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~-~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
++++|||||+|.+.... ....+..++..+.. .+.++|+.|...|..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~-------~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE-------AGKQIVLTSDRPPKELP 259 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH-------CCCcEEEECCCCHHHHH
Confidence 56799999999874322 23345555555543 24566655555454544
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.80 E-value=0.25 Score=48.13 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=26.7
Q ss_pred CCCCcHHHHhhHHHHh----cCC---cEEEEccCCCCchhH
Q 014666 161 LFVPSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLA 194 (420)
Q Consensus 161 ~~~pt~iQ~~~i~~i~----~g~---dvl~~a~TGsGKTla 194 (420)
+..++|||..+|..+. .|+ -+++.||.|+||+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l 42 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV 42 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH
Confidence 4568999999988655 333 489999999998854
No 244
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.74 E-value=0.22 Score=59.73 Aligned_cols=61 Identities=20% Similarity=0.231 Sum_probs=44.2
Q ss_pred CCcHHHHhhHHHHhcC--CcEEEEccCCCCchhHhH---HHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYL---LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~---lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.+++.|..++..++.+ +-+++++..|+|||.+.. -++.+.+ ...+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~---------------------------~~~g~~v 1071 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF---------------------------ESEQLQV 1071 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH---------------------------HhcCCeE
Confidence 6899999999998865 457889999999997652 1222211 1135678
Q ss_pred EEEcCcHHHHHHH
Q 014666 238 IVLCTTEESADQG 250 (420)
Q Consensus 238 Lil~PtreLa~Qi 250 (420)
+.++||..-|..+
T Consensus 1072 ~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1072 IGLAPTHEAVGEL 1084 (1960)
T ss_pred EEEeChHHHHHHH
Confidence 8899998777665
No 245
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.72 E-value=0.57 Score=49.54 Aligned_cols=137 Identities=12% Similarity=0.095 Sum_probs=84.1
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q 014666 179 KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 258 (420)
+-.++..|--.|||+... +++..++. ...+.++++++|.+..+..++..+..+.
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~-------------------------s~~Gi~IgytAH~~~ts~~vF~eI~~~l 308 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALA-------------------------TFRGIKIGYTAHIRKATEPVFEEIGARL 308 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHH-------------------------hCCCCEEEEEcCcHHHHHHHHHHHHHHH
Confidence 447888899999998655 55553321 1246789999999999999999888875
Q ss_pred ccC--CCceecccCCCChHHHHHHhcCC--CcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHH
Q 014666 259 HCA--RLDSSMENGGVSSKALEDVSNAP--IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILN 334 (420)
Q Consensus 259 ~~~--~i~~~~~~gg~~~~~~~~~l~~~--~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~ 334 (420)
... +-.+..+.| ... .....++ ..|.+++- -..+...=..+++||||||+.+- .+.+..|+-
T Consensus 309 e~~f~~~~v~~vkG-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk----~~al~~ilp 374 (738)
T PHA03368 309 RQWFGASRVDHVKG-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIR----PDAVQTIMG 374 (738)
T ss_pred hhhcchhheeeecC-cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCC----HHHHHHHHH
Confidence 522 111111122 110 0011122 13333321 01122223468999999999774 466777776
Q ss_pred HchhhhcccCCCCceEEEEeecccchHH
Q 014666 335 PLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 335 ~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
.+.. .+.++|++|+|-+.+-.
T Consensus 375 ~l~~-------~n~k~I~ISS~Ns~~~s 395 (738)
T PHA03368 375 FLNQ-------TNCKIIFVSSTNTGKAS 395 (738)
T ss_pred HHhc-------cCccEEEEecCCCCccc
Confidence 6654 48899999999876433
No 246
>PRK12377 putative replication protein; Provisional
Probab=94.61 E-value=0.43 Score=44.78 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCCchhH
Q 014666 178 GKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla 194 (420)
..++++.|++|+|||..
T Consensus 101 ~~~l~l~G~~GtGKThL 117 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL 117 (248)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999953
No 247
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.58 E-value=0.15 Score=49.44 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=25.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCC--cEEE-EccCCCCchhH
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGK--SVVL-SSGSGSGRTLA 194 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~--dvl~-~a~TGsGKTla 194 (420)
.+|+++-.++.+...+... +..|+ ++++ .||+|+|||..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~---------------~~~~~~~~~lll~G~~G~GKT~l 59 (316)
T PHA02544 18 STIDECILPAADKETFKSI---------------VKKGRIPNMLLHSPSPGTGKTTV 59 (316)
T ss_pred CcHHHhcCcHHHHHHHHHH---------------HhcCCCCeEEEeeCcCCCCHHHH
Confidence 4677777777776655431 22332 4444 89999999965
No 248
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.55 E-value=0.16 Score=58.55 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=74.9
Q ss_pred CcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCc
Q 014666 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTT 243 (420)
Q Consensus 164 pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~Pt 243 (420)
.|+-|..+|. ..|+++++.|.-|||||.+.+-=++..|... ..--+.|+|+=|
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-------------------------~~~~~il~~tFt 54 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-------------------------VDIDRLLVVTFT 54 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-------------------------CCHhhEEEEecc
Confidence 5889999987 4689999999999999998665555533210 011359999999
Q ss_pred HHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCc--eEEEecCcch
Q 014666 244 EESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI--RYVVLDEADT 319 (420)
Q Consensus 244 reLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l--~~lVlDEaD~ 319 (420)
+..|..+...+.......-- .........+.+..-...-|+|-..++..+-+.+...-+| .+=|+||.+.
T Consensus 55 ~~aa~e~~~ri~~~l~~~~~------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 55 NAAAREMKERIEEALQKALQ------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 99998877766653321000 0001111112222334567899998876665443322222 3456888775
No 249
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.46 E-value=0.17 Score=47.89 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=30.0
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHH
Q 014666 151 EMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 151 ~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l 200 (420)
.+.++|...|.....+---..+--+..|.-+++.|++|+|||...+--+.
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 44556654444333332223334456778899999999999965443333
No 250
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.44 E-value=0.51 Score=44.95 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCCchhHhHHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l 200 (420)
.+-+++++++|+|||.+..--+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35678889999999987554443
No 251
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.38 E-value=0.086 Score=57.40 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.+++-|..++... ...++|.|..|||||.+..-=+.. ++. .. .....++|+|+-
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~-Li~-----------------~~------~v~p~~IL~lTF 62 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAW-LMQ-----------------VE------NASPYSIMAVTF 62 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHH-HHH-----------------cC------CCChhHeEeeec
Confidence 5899999988643 457999999999999885433332 111 00 112346999999
Q ss_pred cHHHHHHHHHHHHHhh
Q 014666 243 TEESADQGFHMAKFIS 258 (420)
Q Consensus 243 treLa~Qi~~~~~~l~ 258 (420)
|+..|..+...+..+.
T Consensus 63 T~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 63 TNKAAAEMRHRIEQLL 78 (721)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 9999999888887754
No 252
>PRK04195 replication factor C large subunit; Provisional
Probab=94.38 E-value=0.5 Score=48.91 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=28.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhc---CCcEEEEccCCCCchhHh
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLN---GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~---g~dvl~~a~TGsGKTla~ 195 (420)
.+|+++-.++.....|... +..... .+.+++.||+|+|||...
T Consensus 11 ~~l~dlvg~~~~~~~l~~~------------l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREW------------IESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCHHHhcCCHHHHHHHHHH------------HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4577777777776666542 001112 468999999999999654
No 253
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.33 E-value=0.21 Score=51.84 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=58.8
Q ss_pred cCCCCHH-HHHHHHHCCCCCCcH----HHHhhHHHHhc--CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhh
Q 014666 145 ELGLKAE-MIKAVEKMGLFVPSE----IQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGI 217 (420)
Q Consensus 145 ~l~l~~~-l~~~l~~~g~~~pt~----iQ~~~i~~i~~--g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~ 217 (420)
+.++.+. |+.+|...--..+.. ||.+-=..|.. +.=+|++|..|||||.+.+-=+.-.++.++.
T Consensus 186 d~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~--------- 256 (747)
T COG3973 186 DTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG--------- 256 (747)
T ss_pred CCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccc---------
Confidence 3445444 455676653333333 56555555554 4558999999999998754333222222211
Q ss_pred HhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhcc
Q 014666 218 TQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260 (420)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 260 (420)
......+||+.|.+-+..-|.+++-.++..
T Consensus 257 -------------~l~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 257 -------------PLQAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred -------------ccccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 112233999999999999999999998754
No 254
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.33 E-value=0.33 Score=51.17 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=31.9
Q ss_pred CCceEEEecCcchhhccC-CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 307 DDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~-~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
.++++||||++|.+.... ....+..++..+.. .+.|+|+.|-..|.++..
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e-------~gk~IIITSd~~P~eL~~ 426 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHN-------ANKQIVLSSDRPPKQLVT 426 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHh-------cCCCEEEecCCChHhhhh
Confidence 457899999999885433 23445566666543 356777766666655543
No 255
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.32 E-value=0.16 Score=54.70 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=47.8
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
..+++-|+.++-. ...++++.|..|||||.+.+--+.. ++.. . ...+.++|+|+
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ay-Ll~~-----------------~------~~~~~~IL~lt 248 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGW-LLAR-----------------G------QAQPEQILLLA 248 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHH-HHHh-----------------C------CCCHHHeEEEe
Confidence 4689999998853 3356899999999999875433322 2110 0 11234699999
Q ss_pred CcHHHHHHHHHHHHHh
Q 014666 242 TTEESADQGFHMAKFI 257 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l 257 (420)
.|+..|..+...+...
T Consensus 249 ft~~AA~em~eRL~~~ 264 (684)
T PRK11054 249 FGRQAAEEMDERIRER 264 (684)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999998888776654
No 256
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.35 Score=48.16 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=27.5
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
...-+||+||+|.|++... +-+..|++.... ...+++++.-+..-
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~-------~~~~v~vi~i~n~~ 166 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAPGE-------NKVKVSIIAVSNDD 166 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhccc-------cceeEEEEEEeccH
Confidence 4456899999999987654 555555554432 14555555544443
No 257
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.23 E-value=0.32 Score=49.29 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCchhHhH
Q 014666 179 KSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~ 196 (420)
..+++.||+|+|||....
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 379999999999996543
No 258
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.22 E-value=0.67 Score=45.45 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=25.3
Q ss_pred CcHHHHhhHHHHhcC----CcEEEEccCCCCchhH
Q 014666 164 PSEIQCVGIPAVLNG----KSVVLSSGSGSGRTLA 194 (420)
Q Consensus 164 pt~iQ~~~i~~i~~g----~dvl~~a~TGsGKTla 194 (420)
.+|||...|..+... +-+++.||.|.|||..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~ 38 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRAL 38 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHH
Confidence 589999999977643 2489999999999854
No 259
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.22 E-value=0.3 Score=54.12 Aligned_cols=136 Identities=16% Similarity=0.102 Sum_probs=81.6
Q ss_pred CCCcHHHHhhHHHHh-----cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCe
Q 014666 162 FVPSEIQCVGIPAVL-----NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPR 236 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~-----~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 236 (420)
..+.++|...+..+. .+.+.+++...|-|||+.-+.-+.+ +... .....+.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~-----------------------~~~~~~~ 392 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLES-----------------------IKVYLGP 392 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhc-----------------------ccCCCCC
Confidence 456677888776544 3678888899999999764443332 1000 0111457
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCCh----HHHHH-HhcCC----CcEEEeChhHHHhchh-cCcccC
Q 014666 237 AIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS----KALED-VSNAP----IGMLIATPSEVLQHIE-DRNVSC 306 (420)
Q Consensus 237 ~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~----~~~~~-~l~~~----~~IlV~TP~~L~~~l~-~~~~~l 306 (420)
+||+||+-.+ .+....+..+...... +...+|.... ..... ..... .+++++|-+.|..... ...+.-
T Consensus 393 ~liv~p~s~~-~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~ 470 (866)
T COG0553 393 ALIVVPASLL-SNWKREFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKK 470 (866)
T ss_pred eEEEecHHHH-HHHHHHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhh
Confidence 9999997654 4445555665543332 4455554431 22222 22222 6899999999887431 123334
Q ss_pred CCceEEEecCcchhhcc
Q 014666 307 DDIRYVVLDEADTLFDR 323 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~ 323 (420)
....++|+||||.+-+.
T Consensus 471 ~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 471 IEWDRVVLDEAHRIKND 487 (866)
T ss_pred ceeeeeehhhHHHHhhh
Confidence 55789999999997544
No 260
>CHL00181 cbbX CbbX; Provisional
Probab=94.19 E-value=0.35 Score=46.46 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
.|.++++.||+|+|||...-.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 356799999999999976443
No 261
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.16 E-value=0.37 Score=48.31 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+.++++.|++|+|||...
T Consensus 55 ~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 367999999999999863
No 262
>PF13173 AAA_14: AAA domain
Probab=94.13 E-value=0.33 Score=40.41 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=27.9
Q ss_pred CceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
.-.+|+|||+|.+ .+++..+..+...- .+.++++.+....
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~---------~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNG---------PNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhc---------cCceEEEEccchH
Confidence 4578999999988 45677777777643 2567777665544
No 263
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.13 E-value=0.23 Score=53.66 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCCchhHhHHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l 200 (420)
|.-+++.+|||+|||.++..-+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 44578999999999988665443
No 264
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.05 E-value=0.27 Score=53.63 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=18.5
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHH
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNP 335 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~ 335 (420)
..+.+|||||+|.|...+ ...|..+++.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 346789999999997542 3444455553
No 265
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.02 E-value=0.35 Score=49.59 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=15.9
Q ss_pred cEEEEccCCCCchhHhHHHH
Q 014666 180 SVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~ 199 (420)
-+|+.||.|+|||.+..+-+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999997754433
No 266
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.01 E-value=0.16 Score=55.83 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=16.1
Q ss_pred cEEEEccCCCCchhHhHHHH
Q 014666 180 SVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~ 199 (420)
-+|+.++.|+|||.+..+-+
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lA 58 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILA 58 (824)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47999999999998765544
No 267
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.47 Score=42.44 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=33.2
Q ss_pred CcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHc
Q 014666 285 IGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336 (420)
Q Consensus 285 ~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l 336 (420)
+-++|-.+..+.+.+......+. +++|.||||.-+ +...-.++..+...|
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 45777788888888876544333 889999999854 333344455555443
No 268
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.99 E-value=0.13 Score=55.47 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=47.4
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.+++-|..++... ...++|.|..|||||.+..-=+...|... .....++|+|+-
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~------------------------~v~p~~IL~lTF 55 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGC------------------------GYQARHIAAVTF 55 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhc------------------------CCCHHHeeeEec
Confidence 3688899988653 45788999999999988544443322110 012235899999
Q ss_pred cHHHHHHHHHHHHHh
Q 014666 243 TEESADQGFHMAKFI 257 (420)
Q Consensus 243 treLa~Qi~~~~~~l 257 (420)
|+..|..+...+..+
T Consensus 56 T~kAA~em~~Rl~~~ 70 (672)
T PRK10919 56 TNKAAREMKERVAQT 70 (672)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999998887777654
No 269
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.94 E-value=0.49 Score=48.15 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCCchhHhHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~ 199 (420)
...+++++++|+|||.+..--+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3468999999999998754433
No 270
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.91 E-value=0.55 Score=45.98 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=25.0
Q ss_pred CcHHHHhhHHHHhc--C---CcEEEEccCCCCchhHh
Q 014666 164 PSEIQCVGIPAVLN--G---KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 164 pt~iQ~~~i~~i~~--g---~dvl~~a~TGsGKTla~ 195 (420)
.+|||...|..+.. | +-+++.||.|.|||...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la 38 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA 38 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH
Confidence 37889999987763 2 35899999999998653
No 271
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.86 E-value=0.46 Score=49.04 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.7
Q ss_pred CcEEEEccCCCCchhHhHH
Q 014666 179 KSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~l 197 (420)
+.+|++||.|+|||.+..+
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 4699999999999976443
No 272
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.85 E-value=0.78 Score=44.78 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCceEEEecCcchhh-ccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 307 DDIRYVVLDEADTLF-DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l-~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
.+.++||||=+-++- +.....++..+.+.+... .+..+.--++.++||...+....+..|..
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~--~~~~p~~~~LVl~a~~g~~~~~~a~~f~~ 257 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKA--DPDAPHEVLLVLDATTGQNALSQAKAFHE 257 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhh--cCCCCceEEEEEECCCChHHHHHHHHHHh
Confidence 345666666665542 122334555555443210 11123445788888876655555555553
No 273
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.83 E-value=0.17 Score=48.48 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCCchhHhHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp 198 (420)
++.+++++|||+|||....--
T Consensus 194 ~~vi~~vGptGvGKTTt~~kL 214 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKL 214 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 457899999999999875433
No 274
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.80 E-value=0.26 Score=45.42 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=26.2
Q ss_pred CceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
..++|||||+|.+- ..-...+..++..+.. ....+++++++.++
T Consensus 90 ~~~~liiDdi~~l~-~~~~~~L~~~~~~~~~-------~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLD-DAQQIALFNLFNRVRA-------HGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcC-chHHHHHHHHHHHHHH-------cCCcEEEEeCCCCH
Confidence 46789999999863 3234445555554432 12335777777654
No 275
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.79 E-value=0.59 Score=48.51 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.2
Q ss_pred CcEEEEccCCCCchhHhHHH
Q 014666 179 KSVVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp 198 (420)
+.+|++||.|+|||.+..+-
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46999999999999775443
No 276
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.75 E-value=0.37 Score=47.13 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=32.3
Q ss_pred CCCCCCcHHHHhhHHHHhcCC--cEEEEccCCCCchhHhHHHHHH
Q 014666 159 MGLFVPSEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~--dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.|+..-..-|..|+.+++.-. =|.+.++-|||||+-.+-..+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgle 268 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLE 268 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHH
Confidence 477666778888888888642 3677888999999876666665
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=93.64 E-value=0.39 Score=45.42 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.9
Q ss_pred HhcCCcEEEEccCCCCchhHh
Q 014666 175 VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..|.++++.||+|+|||...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 557899999999999999543
No 278
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.59 E-value=0.55 Score=45.03 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+.++++.||+|+|||...
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 3568999999999999764
No 279
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.57 E-value=0.22 Score=45.76 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=21.3
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
.+.+.+|+||||-|- .|-...++..++...
T Consensus 112 grhKIiILDEADSMT-~gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 112 GRHKIIILDEADSMT-AGAQQALRRTMEIYS 141 (333)
T ss_pred CceeEEEeeccchhh-hHHHHHHHHHHHHHc
Confidence 567899999999996 344556666665543
No 280
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.50 E-value=0.35 Score=51.31 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=14.8
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
-+|++|+.|+|||....+
T Consensus 40 A~LFtGP~GvGKTTLAri 57 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRI 57 (700)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999976544
No 281
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.47 E-value=0.17 Score=54.30 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=14.5
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
-+|++++.|+|||....+
T Consensus 40 AyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 469999999999976443
No 282
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.42 E-value=1 Score=46.50 Aligned_cols=160 Identities=11% Similarity=0.064 Sum_probs=92.3
Q ss_pred CCcHHHHhhHHHHhcC----------CcEEEEccCCCCchhHhH-HHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCC
Q 014666 163 VPSEIQCVGIPAVLNG----------KSVVLSSGSGSGRTLAYL-LPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMK 231 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g----------~dvl~~a~TGsGKTla~~-lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 231 (420)
..-|||.-++-.++.- +-.++.-|-+-|||...+ |.+...+..+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~------------------------- 115 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW------------------------- 115 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-------------------------
Confidence 5789999999888732 347788888899986544 4444432221
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhhccCC-CceecccCCCChHHHHHHhcCCCcEEEeChhHH---Hhchhc--Cccc
Q 014666 232 PMHPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSSKALEDVSNAPIGMLIATPSEV---LQHIED--RNVS 305 (420)
Q Consensus 232 ~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~-i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L---~~~l~~--~~~~ 305 (420)
..+-...|++|+.+-+.+.+..++.-....+ ++. ..+...+....+-+.. ...+.. +..+
T Consensus 116 ~~~~~~~i~A~s~~qa~~~F~~ar~mv~~~~~l~~--------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~D 181 (546)
T COG4626 116 RSGAGIYILAPSVEQAANSFNPARDMVKRDDDLRD--------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVD 181 (546)
T ss_pred hcCCcEEEEeccHHHHHHhhHHHHHHHHhCcchhh--------------hhccccceeEEEecccceeeeeeccCCCccc
Confidence 2455699999999999999988877544322 111 1111122222222222 222222 2334
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
-.+..+.|+||.|..-+.+ ..+..+..-+.. .++.+++..|. -+.....++..+..
T Consensus 182 g~~~~~~I~DEih~f~~~~--~~~~~~~~g~~a------r~~~l~~~ITT-~g~~~~g~~~q~~~ 237 (546)
T COG4626 182 GLNSVGAIIDELHLFGKQE--DMYSEAKGGLGA------RPEGLVVYITT-SGDPPAGVFKQKLQ 237 (546)
T ss_pred CCCcceEEEehhhhhcCHH--HHHHHHHhhhcc------CcCceEEEEec-CCCCCccHHHHHHH
Confidence 4557899999999875443 455555554433 34677777766 44444444444433
No 283
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.40 E-value=0.23 Score=55.32 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=91.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
.|++++..-..|.|||..-+...+...-+.....+.. .....+. .....-.|||+|.-- -.|.+..+..
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~------~~~e~~n----~~~tgaTLII~P~aI-l~QW~~EI~k 441 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSE------LVKEGEN----LVETGATLIICPNAI-LMQWFEEIHK 441 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhH------HHhcccc----eeecCceEEECcHHH-HHHHHHHHHH
Confidence 3567888888999999987776665322211111111 1111110 112345899999654 4676666665
Q ss_pred hhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC--------------cccC----CCceE--EEecC
Q 014666 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--------------NVSC----DDIRY--VVLDE 316 (420)
Q Consensus 257 l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~--------------~~~l----~~l~~--lVlDE 316 (420)
-... ++++....|-....-....---.+|||++|...|..-+... +..+ -.+.| +++||
T Consensus 442 H~~~-~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDE 520 (1394)
T KOG0298|consen 442 HISS-LLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDE 520 (1394)
T ss_pred hccc-cceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhH
Confidence 4433 25665555421110000011234899999999998776432 1111 11222 69999
Q ss_pred cchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHH
Q 014666 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 317 aD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
|. |+.. ...+....+..|+. .-.-.+|.|.-..+..+
T Consensus 521 aQ-Mves-ssS~~a~M~~rL~~---------in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 521 AQ-MVES-SSSAAAEMVRRLHA---------INRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HH-hhcc-hHHHHHHHHHHhhh---------hceeeecCCchhhhhhh
Confidence 98 5544 46666666666663 45678888854444444
No 284
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.32 E-value=1 Score=42.79 Aligned_cols=73 Identities=7% Similarity=0.236 Sum_probs=39.2
Q ss_pred eChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc-chHHHHHHHH
Q 014666 290 ATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA-EMLGEQLSSL 368 (420)
Q Consensus 290 ~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~-~~v~~~~~~~ 368 (420)
.+|..+.+.+..-. ...+.++++||-+=++.. -...+..+...+... .++.-.+.+|||.. .++.++++.|
T Consensus 137 ~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~--~~~~l~el~~~~~~~-----~~~~~~LVl~a~~~~~d~~~~~~~f 208 (270)
T PRK06731 137 RDEAAMTRALTYFK-EEARVDYILIDTAGKNYR--ASETVEEMIETMGQV-----EPDYICLTLSASMKSKDMIEIITNF 208 (270)
T ss_pred CCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcC--CHHHHHHHHHHHhhh-----CCCeEEEEEcCccCHHHHHHHHHHh
Confidence 35666655553210 124578999998876531 123344433333211 12334567899874 5777777766
Q ss_pred hh
Q 014666 369 ME 370 (420)
Q Consensus 369 ~~ 370 (420)
-.
T Consensus 209 ~~ 210 (270)
T PRK06731 209 KD 210 (270)
T ss_pred CC
Confidence 43
No 285
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.27 E-value=0.36 Score=47.13 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchhHhH
Q 014666 180 SVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~ 196 (420)
.+++.||+|+|||....
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999997643
No 286
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.27 E-value=0.34 Score=46.87 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=32.6
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHH-HHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 151 EMIKAVEKMGLFVPSEIQCVGIP-AVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 151 ~l~~~l~~~g~~~pt~iQ~~~i~-~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.-+..|...|. +++-|...|. ++..+.+++++|+||||||... -.++.
T Consensus 106 ~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~ 154 (299)
T TIGR02782 106 FTLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLA 154 (299)
T ss_pred CCHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHH
Confidence 34555666664 5566666665 4567789999999999999653 33444
No 287
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.17 E-value=0.44 Score=47.39 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=17.9
Q ss_pred cCCcEEEEccCCCCchhHhHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~ 199 (420)
.++-+++.+|+|+|||....--+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999997755444
No 288
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.16 E-value=0.21 Score=50.45 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCCchhHhHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~ 199 (420)
.|.-+.+.|+||+|||.....-+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA 212 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLA 212 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45668999999999998865443
No 289
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.05 E-value=0.41 Score=45.15 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=23.7
Q ss_pred CCcHHHHhhHHHHh----cCC-cEEEEccCCCCchhHhH
Q 014666 163 VPSEIQCVGIPAVL----NGK-SVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~----~g~-dvl~~a~TGsGKTla~~ 196 (420)
.+++.+..++..+. .+. .+++.|++|+|||+...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 45666666665442 333 68999999999997644
No 290
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.03 E-value=0.16 Score=49.29 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=29.1
Q ss_pred CCCCCcHHHHhhHHHHhcC-CcEEEEccCCCCchhH
Q 014666 160 GLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLA 194 (420)
Q Consensus 160 g~~~pt~iQ~~~i~~i~~g-~dvl~~a~TGsGKTla 194 (420)
.|..+++-|...+-.+..+ .|+|+++.||||||..
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl 189 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL 189 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH
Confidence 3557899999998876655 5999999999999964
No 291
>PHA00729 NTP-binding motif containing protein
Probab=93.01 E-value=0.57 Score=43.20 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=38.1
Q ss_pred cEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHH-----HHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 286 GMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGP-----EISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 286 ~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~-----~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
..++.+...|.+.|....-....+.+||||++-.-+....|. ....+...+. +.++++.|...-+.+
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLr--------SR~~l~il~~ls~ed 131 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIR--------TRVSAVIFTTPSPED 131 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHH--------hhCcEEEEecCCHHH
Confidence 344555555666554321112346789999964333222111 1112222222 245778887777777
Q ss_pred HHHHHHH
Q 014666 361 LGEQLSS 367 (420)
Q Consensus 361 v~~~~~~ 367 (420)
+...++.
T Consensus 132 L~~~Lr~ 138 (226)
T PHA00729 132 LAFYLRE 138 (226)
T ss_pred HHHHHHh
Confidence 7766654
No 292
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.98 E-value=0.66 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=18.2
Q ss_pred hcCCcEEEEccCCCCchhHhHHH
Q 014666 176 LNGKSVVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~lp 198 (420)
..|..+++.|+||+|||.....-
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakL 370 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKL 370 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 35678999999999999876443
No 293
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.96 E-value=0.43 Score=52.33 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.7
Q ss_pred EEEEccCCCCchhHhHHH
Q 014666 181 VVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 181 vl~~a~TGsGKTla~~lp 198 (420)
+|++||.|+|||.+..+-
T Consensus 41 yLFtGPpGtGKTTLARiL 58 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLF 58 (944)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 589999999999775443
No 294
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.96 E-value=1 Score=41.71 Aligned_cols=21 Identities=10% Similarity=0.415 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCCCchhHh
Q 014666 175 VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..|.-+++.+++|+|||...
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~ 41 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILS 41 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 345778999999999999763
No 295
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.94 E-value=0.26 Score=53.21 Aligned_cols=69 Identities=12% Similarity=0.013 Sum_probs=47.3
Q ss_pred CcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCc
Q 014666 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTT 243 (420)
Q Consensus 164 pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~Pt 243 (420)
+++-|..++.. ...+++|.|+.|||||.+.+-=+...+.+. .....++|+|+.|
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~------------------------~~~p~~IL~vTFt 55 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNC------------------------GYKARNIAAVTFT 55 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc------------------------CCCHHHeEEEecc
Confidence 67889888764 356899999999999988555444422110 0123458888888
Q ss_pred HHHHHHHHHHHHHhh
Q 014666 244 EESADQGFHMAKFIS 258 (420)
Q Consensus 244 reLa~Qi~~~~~~l~ 258 (420)
+..|.++...+....
T Consensus 56 ~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 56 NKAAREMKERVAKTL 70 (664)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888777776543
No 296
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.92 E-value=0.73 Score=49.99 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=26.1
Q ss_pred CceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
.-.+|||||+|+|.. .+-..++..+. +.+++++++|-.+...
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE---------~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE---------NGTITLIGATTENPYF 150 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc---------CceEEEEEecCCChHh
Confidence 356899999998742 22334444443 4578888888655433
No 297
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.86 E-value=0.31 Score=51.34 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.9
Q ss_pred CcEEEEccCCCCchhHhHHH
Q 014666 179 KSVVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp 198 (420)
+-+|++||.|+|||.+.-+-
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45789999999999775443
No 298
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.80 E-value=0.46 Score=50.78 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.0
Q ss_pred CcEEEEccCCCCchhHhHHH
Q 014666 179 KSVVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp 198 (420)
+.+|++|+.|+|||....+-
T Consensus 39 Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46899999999999765443
No 299
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.3 Score=51.90 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=15.6
Q ss_pred CcEEEEccCCCCchhHhHHH
Q 014666 179 KSVVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp 198 (420)
+-+|++||.|+|||.+..+-
T Consensus 38 HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35699999999999765443
No 300
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=92.58 E-value=0.73 Score=48.67 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=84.8
Q ss_pred cHHHHhhHHHH----hcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 165 SEIQCVGIPAV----LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 165 t~iQ~~~i~~i----~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
-.+|..-+..+ -+|-|-|+.-..|-|||.-. |.++.++... ..-.|| -|||
T Consensus 569 KEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~-----------------------~nIwGP-FLVV 623 (1185)
T KOG0388|consen 569 KEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAET-----------------------HNIWGP-FLVV 623 (1185)
T ss_pred HHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHh-----------------------ccCCCc-eEEe
Confidence 34566665543 36889999999999999763 3444433221 122345 4677
Q ss_pred cCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHH---------hcCCCcEEEeChhHHHhchhcCcccCCCce
Q 014666 241 CTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDV---------SNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310 (420)
Q Consensus 241 ~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~---------l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~ 310 (420)
+|.--|- +....+++++ .++++-.-|+.......+. -..+.+|+|++...+..-- ..+.--.-.
T Consensus 624 tpaStL~----NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe--ky~qkvKWQ 697 (1185)
T KOG0388|consen 624 TPASTLH----NWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE--KYLQKVKWQ 697 (1185)
T ss_pred ehHHHHh----HHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH--HHHHhhhhh
Confidence 7765553 3334444443 4677767776665443332 2345789998876542211 111111235
Q ss_pred EEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 311 ~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
|.|||||..+-... ......++.+- .+-.++++.|.-
T Consensus 698 YMILDEAQAIKSSs-S~RWKtLLsF~----------cRNRLLLTGTPI 734 (1185)
T KOG0388|consen 698 YMILDEAQAIKSSS-SSRWKTLLSFK----------CRNRLLLTGTPI 734 (1185)
T ss_pred heehhHHHHhhhhh-hhHHHHHhhhh----------ccceeeecCCcc
Confidence 89999999885433 22333444321 234577778753
No 301
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.51 E-value=1.4 Score=43.70 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=33.3
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
....+|+|||+|. -|-+-.--+..++..|-. .+.-+|+.|-+.|.++
T Consensus 126 ~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~-------~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 126 KESRLLCFDEFQV-TDIADAMILKRLFEALFK-------RGVVLVATSNRPPEDL 172 (362)
T ss_pred hcCCEEEEeeeec-cchhHHHHHHHHHHHHHH-------CCCEEEecCCCChHHH
Confidence 5567899999984 345545556677777754 4678888888888764
No 302
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.39 E-value=0.46 Score=50.44 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=19.8
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
+...+++||||+|.|-. ..+..++..|..
T Consensus 118 ~~~~kVvIIDEa~~L~~----~a~naLLk~LEe 146 (585)
T PRK14950 118 LARYKVYIIDEVHMLST----AAFNALLKTLEE 146 (585)
T ss_pred cCCeEEEEEeChHhCCH----HHHHHHHHHHhc
Confidence 45679999999998753 345555655543
No 303
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.35 E-value=0.73 Score=47.19 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=32.6
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
.|.-+++.+++|+|||...+--+.+ + . ..+.+++++. +.+...|+...+..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~-~-----------------a----------~~g~~vlYvs-~Ees~~qi~~ra~r 129 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR-L-----------------A----------AAGGKVLYVS-GEESASQIKLRAER 129 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH-H-----------------H----------hcCCeEEEEE-ccccHHHHHHHHHH
Confidence 3567899999999999754433333 1 0 0234677776 45566676665555
Q ss_pred h
Q 014666 257 I 257 (420)
Q Consensus 257 l 257 (420)
+
T Consensus 130 l 130 (446)
T PRK11823 130 L 130 (446)
T ss_pred c
Confidence 4
No 304
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.30 E-value=0.19 Score=52.74 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=35.1
Q ss_pred CCcHHHHhhHHH----HhcCCcEEEEccCCCCchhHhHHHHHHHhh
Q 014666 163 VPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQVYS 204 (420)
Q Consensus 163 ~pt~iQ~~~i~~----i~~g~dvl~~a~TGsGKTla~~lp~l~~i~ 204 (420)
.|+.||...... +-.|+=-|+.+|||+|||++.+=..+.||-
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 689999887654 447998899999999999998878877664
No 305
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.28 E-value=0.4 Score=49.41 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=19.6
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
..+.++|||||+|+|- ......++..+..
T Consensus 115 ~~~~kVvIIDE~h~Lt----~~a~~~LLk~LE~ 143 (472)
T PRK14962 115 EGKYKVYIIDEVHMLT----KEAFNALLKTLEE 143 (472)
T ss_pred cCCeEEEEEEChHHhH----HHHHHHHHHHHHh
Confidence 4567899999999884 2344555555543
No 306
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.26 E-value=0.64 Score=49.41 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.8
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
-+|++|+.|+|||....+
T Consensus 40 a~Lf~Gp~GvGKTtlAr~ 57 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRI 57 (618)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 369999999999977554
No 307
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=91.99 E-value=0.56 Score=52.27 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=62.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.+++|++|+++-+..++..++.+. .++++..++|++........+ ....+|||||. . -..++++.+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----i-ie~GIDIp~ 730 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----I-IETGIDIPN 730 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----h-hhccccccc
Confidence 35689999999999988888887763 367899999998876544332 45689999997 2 234678899
Q ss_pred ceEEEecCcchh
Q 014666 309 IRYVVLDEADTL 320 (420)
Q Consensus 309 l~~lVlDEaD~~ 320 (420)
+.++|++.+|++
T Consensus 731 v~~VIi~~a~~~ 742 (926)
T TIGR00580 731 ANTIIIERADKF 742 (926)
T ss_pred CCEEEEecCCCC
Confidence 999999999864
No 308
>PRK06904 replicative DNA helicase; Validated
Probab=91.98 E-value=2.5 Score=43.58 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=31.4
Q ss_pred CceEEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 308 DIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
.++++|||=.+.|-..+ ...++..|.+.|...... -++.+|++| -|+..+
T Consensus 334 ~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke---l~ipVi~ls-QLnR~~ 387 (472)
T PRK06904 334 GLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKE---LKVPVVALS-QLNRTL 387 (472)
T ss_pred CCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHH---hCCeEEEEE-ecCchh
Confidence 58899999988775333 244567777766554422 256777776 455443
No 309
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.92 E-value=0.4 Score=50.75 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=27.6
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
...++|||||||.|- ......++..|... ...=+++|.+|-+..+..
T Consensus 118 g~~kVIIIDEad~Lt----~~a~naLLk~LEEP------~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 118 GRYKVFIIDEAHMLT----REAFNALLKTLEEP------PARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCceEEEEEChHhCC----HHHHHHHHHHhhcc------CCCEEEEEecCChhhhhH
Confidence 557899999999884 34455566665431 122344455555544443
No 310
>PRK05973 replicative DNA helicase; Provisional
Probab=91.89 E-value=0.83 Score=42.53 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=25.4
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.+||... ...-+..|.-+++.|++|+|||...+--+.+
T Consensus 50 ~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 50 ATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4566333 3345566778999999999999764444443
No 311
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.88 E-value=2.3 Score=45.47 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.6
Q ss_pred EEEEccCCCCchhHhHHH
Q 014666 181 VVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 181 vl~~a~TGsGKTla~~lp 198 (420)
+|+.|+.|+|||.+..+-
T Consensus 41 yLf~Gp~GvGKTTlAr~l 58 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLL 58 (647)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999764443
No 312
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.88 E-value=1.6 Score=40.40 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=27.4
Q ss_pred CceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
+.+.+||||.-.+++......+..++..+..... .-.+++++.+...
T Consensus 120 ~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-----~g~tvllt~~~~~ 166 (234)
T PRK06067 120 REDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-----LGKTILITLHPYA 166 (234)
T ss_pred CCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCc
Confidence 5679999999977654434445555444432111 2246677766554
No 313
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.88 E-value=3.4 Score=43.90 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=29.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcC---CcEEEEccCCCCchhHhHHHH
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG---KSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g---~dvl~~a~TGsGKTla~~lp~ 199 (420)
.+|+++--.+.+.+.|.. .+..| +.+|+.||.|+|||....+-+
T Consensus 21 ~~f~dliGq~~~v~~L~~---------------~~~~gri~ha~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTN---------------AFETGRIAQAFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred CCHHHhcCcHHHHHHHHH---------------HHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 457776666666666543 22233 469999999999997654433
No 314
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.79 E-value=0.21 Score=44.39 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=30.1
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
.+-+++++||.+.-+|......+..++..+.. .+.++|+.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-------~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-------HTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-------CCCEEEEEEC
Confidence 45689999999999988877777777766532 2356666654
No 315
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.77 E-value=1 Score=48.34 Aligned_cols=112 Identities=16% Similarity=0.182 Sum_probs=64.2
Q ss_pred cEEEEccCCCCchhHhHHHHHH-HhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q 014666 180 SVVLSSGSGSGRTLAYLLPLVQ-VYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~l~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 258 (420)
-.|+.---|-|||..-+..++. ..... +. .......-.||+||+--+ .|....+....
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~------------------~~--~~~~~~kttLivcp~s~~-~qW~~elek~~ 212 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSK------------------EE--DRQKEFKTTLIVCPTSLL-TQWKTELEKVT 212 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCc------------------ch--hhccccCceeEecchHHH-HHHHHHHhccC
Confidence 3577777899999875544443 11100 00 001123447888887655 44444446666
Q ss_pred ccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCc--eEEEecCcchhhc
Q 014666 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI--RYVVLDEADTLFD 322 (420)
Q Consensus 259 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l--~~lVlDEaD~~l~ 322 (420)
....+.+.+.+| ...... ...+++|||+|++.+.. ..+..+ -.+|+||||.+-.
T Consensus 213 ~~~~l~v~v~~g---r~kd~~-el~~~dVVltTy~il~~------~~l~~i~w~Riildea~~ikn 268 (674)
T KOG1001|consen 213 EEDKLSIYVYHG---RTKDKS-ELNSYDVVLTTYDILKN------SPLVKIKWLRIVLDEAHTIKN 268 (674)
T ss_pred CccceEEEEecc---cccccc-hhcCCceEEeeHHHhhc------ccccceeEEEEEeccccccCC
Confidence 665666666666 111111 22457899999998864 112223 3479999998853
No 316
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.75 E-value=0.23 Score=44.32 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=29.1
Q ss_pred HHHCCCCCCcHHHHhhHHH-HhcCCcEEEEccCCCCchhHh
Q 014666 156 VEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~-i~~g~dvl~~a~TGsGKTla~ 195 (420)
|.+.|+ .++-|...+.. +..|..++++++||||||..+
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 445554 56777777774 567899999999999999764
No 317
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.74 E-value=0.69 Score=46.62 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=20.2
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
...-+++||||+|.|-. .....++..+..
T Consensus 125 ~~~~kvvIIdea~~l~~----~~~~~LLk~LEe 153 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSI----AAFNAFLKTLEE 153 (397)
T ss_pred cCCeEEEEEeChhhCCH----HHHHHHHHHHhc
Confidence 46779999999998853 344555665543
No 318
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.73 E-value=0.61 Score=48.55 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
-+|+.||.|+|||.+..+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 479999999999976544
No 319
>PRK10436 hypothetical protein; Provisional
Probab=91.73 E-value=0.8 Score=47.03 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=22.6
Q ss_pred HHHHhhHHHHh--cCCcEEEEccCCCCchhHhHHHHHH
Q 014666 166 EIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 166 ~iQ~~~i~~i~--~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
+-|...|..+. .+.-+++++|||||||... ..++.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~ 240 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQ 240 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHH
Confidence 33444444333 4456899999999999864 34455
No 320
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.67 E-value=0.8 Score=42.59 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=35.4
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
.|.-+++.|++|+|||...+--+.+.+ ..+-++++++ +.+-..++.+.+..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~----------------------------~~ge~~lyvs-~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL----------------------------QMGEPGIYVA-LEEHPVQVRRNMAQ 70 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH----------------------------HcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 467899999999999975443343311 1344577777 56667777777766
Q ss_pred hh
Q 014666 257 IS 258 (420)
Q Consensus 257 l~ 258 (420)
++
T Consensus 71 ~g 72 (237)
T TIGR03877 71 FG 72 (237)
T ss_pred hC
Confidence 54
No 321
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.58 E-value=1.8 Score=43.65 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=17.3
Q ss_pred CCcEEEEccCCCCchhHhHHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l 200 (420)
+.-+++.+|+|+|||....--+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34488999999999987655443
No 322
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.57 E-value=2.2 Score=42.04 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=24.7
Q ss_pred CcHHHHhhHHHHhc--C---CcEEEEccCCCCchhHh
Q 014666 164 PSEIQCVGIPAVLN--G---KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 164 pt~iQ~~~i~~i~~--g---~dvl~~a~TGsGKTla~ 195 (420)
.+|||...|..+.. + +-+++.||.|.||+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA 38 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA 38 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH
Confidence 37889888887654 2 35899999999998653
No 323
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=91.55 E-value=2.4 Score=45.56 Aligned_cols=119 Identities=11% Similarity=0.152 Sum_probs=75.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH---h-cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV---S-NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~---l-~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.++|+..|..+...+... ++.+..++|+......... + ....+|+||| +.+. .++++..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~ 510 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPE 510 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCC
Confidence 4678999999999999988888765 6778888887665433222 2 3457899999 2333 5677899
Q ss_pred ceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHH
Q 014666 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSS 367 (420)
Q Consensus 309 l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~ 367 (420)
++++|+=++|... +.......+..+.+.... ..-.+++|--..+..+...+..
T Consensus 511 v~lVvi~DadifG---~p~~~~~~iqriGRagR~---~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 511 VSLVAILDADKEG---FLRSERSLIQTIGRAARN---VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CcEEEEeCccccc---CCCCHHHHHHHhcCCCCC---CCCEEEEEEcCCCHHHHHHHHH
Confidence 9999998888643 222222333333222222 2345677766676655555444
No 324
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=0.37 Score=47.79 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=26.9
Q ss_pred cccCCCCHHHHHHHHHCCCCC-CcHHHHhhHHHHhcCCcEEEEccCCCCchhH
Q 014666 143 FQELGLKAEMIKAVEKMGLFV-PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 143 f~~l~l~~~l~~~l~~~g~~~-pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla 194 (420)
|.+.=|++.|-+.+..+-... -|.- +-.-.+|+++-+|+|+|||++
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~------h~apfRNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKK------HQAPFRNILFYGPPGTGKTMF 400 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhccccc------ccchhhheeeeCCCCCCchHH
Confidence 555667777766665432110 0000 001137999999999999975
No 325
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.50 E-value=0.83 Score=42.04 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.8
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
++|+.||+|+|||....+
T Consensus 52 h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred eEEEECCCccchhHHHHH
Confidence 699999999999965433
No 326
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.41 E-value=3.9 Score=35.55 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
...+++|||+||.|- ......+++.|...+ .+..+|++ ++-+..+..
T Consensus 101 ~~~KviiI~~ad~l~----~~a~NaLLK~LEepp-----~~~~fiL~-t~~~~~il~ 147 (162)
T PF13177_consen 101 GKYKVIIIDEADKLT----EEAQNALLKTLEEPP-----ENTYFILI-TNNPSKILP 147 (162)
T ss_dssp SSSEEEEEETGGGS-----HHHHHHHHHHHHSTT-----TTEEEEEE-ES-GGGS-H
T ss_pred CCceEEEeehHhhhh----HHHHHHHHHHhcCCC-----CCEEEEEE-ECChHHChH
Confidence 568999999999885 344445555554321 24444444 444444433
No 327
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.33 E-value=1.4 Score=39.56 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCceEEEecCcchhhccCC--HHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHH
Q 014666 307 DDIRYVVLDEADTLFDRGF--GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~--~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~ 366 (420)
..+++|||||+-..++.|+ .+++..++..-+ ...-+|+.--..|+++.+.+.
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp--------~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARP--------GMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC--------CCCEEEEECCCCCHHHHHhCc
Confidence 5678999999999998885 344444444332 234445544456776666543
No 328
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.33 E-value=2.7 Score=42.75 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=15.8
Q ss_pred cEEEEccCCCCchhHhHHHH
Q 014666 180 SVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~ 199 (420)
-+++++++|+|||.+..--+
T Consensus 101 vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58899999999998754433
No 329
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.28 E-value=0.82 Score=46.05 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=33.1
Q ss_pred cccccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 139 VVSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..+|.+++--+...+.+.+. -+..|.-++..- +..++.+++.||+|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 345799988666666665542 122222222111 224578999999999999764
No 330
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.17 E-value=0.54 Score=49.52 Aligned_cols=62 Identities=13% Similarity=0.001 Sum_probs=44.0
Q ss_pred CCcHHHHhhHHHHhcC--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 163 VPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
..+|+|.+...++... +.|+++.++-+|||.+.+..+...+ . ....-+|++
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i-~--------------------------~~P~~~l~v 68 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSI-D--------------------------QDPGPMLYV 68 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEE-E--------------------------eCCCCEEEE
Confidence 5688888888777653 6899999999999995444333211 1 122348999
Q ss_pred cCcHHHHHHHH
Q 014666 241 CTTEESADQGF 251 (420)
Q Consensus 241 ~PtreLa~Qi~ 251 (420)
.||.++|....
T Consensus 69 ~Pt~~~a~~~~ 79 (557)
T PF05876_consen 69 QPTDDAAKDFS 79 (557)
T ss_pred EEcHHHHHHHH
Confidence 99999998844
No 331
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=91.04 E-value=0.077 Score=47.79 Aligned_cols=33 Identities=15% Similarity=0.438 Sum_probs=30.1
Q ss_pred CCCcEEEeChhHHHhchhcCcccCCCceEEEec
Q 014666 283 APIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315 (420)
Q Consensus 283 ~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 315 (420)
+..++-||||+|+..++..+.+.++.+.++|||
T Consensus 195 ~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD 227 (271)
T KOG3089|consen 195 RVVHLGIGTPGRIKELVKQGGFNLSPLKFIILD 227 (271)
T ss_pred cceeEeecCcHHHHHHHHhcCCCCCcceeEEee
Confidence 346788999999999999999999999999998
No 332
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=91.03 E-value=2.8 Score=40.84 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=30.3
Q ss_pred hHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 293 ~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
..|+..+..+.-..+.--.+|+||+|....+.....+..++..-.
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq 166 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHh
Confidence 456666666544444446789999998876666666777776654
No 333
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.01 E-value=1.4 Score=46.62 Aligned_cols=19 Identities=21% Similarity=0.280 Sum_probs=15.4
Q ss_pred EEEEccCCCCchhHhHHHH
Q 014666 181 VVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 181 vl~~a~TGsGKTla~~lp~ 199 (420)
+|++||.|+|||.+..+-+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998755533
No 334
>PLN03025 replication factor C subunit; Provisional
Probab=90.99 E-value=1 Score=43.92 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
.++++.||+|+|||...
T Consensus 35 ~~lll~Gp~G~GKTtla 51 (319)
T PLN03025 35 PNLILSGPPGTGKTTSI 51 (319)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999653
No 335
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.99 E-value=1.1 Score=43.47 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.++.+++.|++|+|||...
T Consensus 155 ~~~gl~L~G~~G~GKThLa 173 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLL 173 (306)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3568999999999999653
No 336
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.92 E-value=2.1 Score=39.54 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCCchhHhH
Q 014666 176 LNGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~ 196 (420)
..|.-+++.|++|+|||...+
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~ 31 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFAL 31 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHH
Confidence 456778999999999996533
No 337
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.86 E-value=0.52 Score=43.33 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.|.-+++.+++|+|||.-.+--+.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~ 42 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYN 42 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 4578999999999999654433333
No 338
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.85 E-value=0.82 Score=52.21 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=61.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.+++|++|+++-+..++..+..... ++++.+++|+++.......+ ....+|||||.- + ..++++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdI-----i-erGIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI-----I-ETGIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECch-----h-hcccccccC
Confidence 46799999999998888888877643 56788899998876544432 356899999952 2 246789999
Q ss_pred eEEEecCcchh
Q 014666 310 RYVVLDEADTL 320 (420)
Q Consensus 310 ~~lVlDEaD~~ 320 (420)
+++|++.+|++
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999999865
No 339
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.83 E-value=1.8 Score=43.99 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=27.7
Q ss_pred CceEEEecCcchhhc---cCCHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 308 DIRYVVLDEADTLFD---RGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~---~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
.+++||||=.+.|.. ......+..|.+.|...... -++-+|++|.
T Consensus 305 ~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke---~~i~Vi~lsQ 352 (421)
T TIGR03600 305 GLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKE---LDVPVVLLAQ 352 (421)
T ss_pred CCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHH---hCCcEEEecc
Confidence 588999999887753 12344566676666544321 2566666654
No 340
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=90.82 E-value=3.7 Score=40.14 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=23.3
Q ss_pred CcHHHHhhHHHHh----cC---CcEEEEccCCCCchhH
Q 014666 164 PSEIQCVGIPAVL----NG---KSVVLSSGSGSGRTLA 194 (420)
Q Consensus 164 pt~iQ~~~i~~i~----~g---~dvl~~a~TGsGKTla 194 (420)
.+|||...|..+. .| +-+++.||.|.||+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~l 40 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQL 40 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHH
Confidence 3688888877654 34 3578999999999854
No 341
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.78 E-value=0.4 Score=48.95 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=25.5
Q ss_pred cHHHHhhHHHHhcCC--cEEEEccCCCCchhHhHHHHHH
Q 014666 165 SEIQCVGIPAVLNGK--SVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 165 t~iQ~~~i~~i~~g~--dvl~~a~TGsGKTla~~lp~l~ 201 (420)
++.|...+..+++.. =+++.+|||||||.+ +..+++
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~ 280 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALS 280 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHH
Confidence 566666666655433 378999999999977 455555
No 342
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.67 E-value=0.94 Score=45.06 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=14.6
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
-+++.||.|+|||.....
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 469999999999976443
No 343
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.64 E-value=3.3 Score=42.91 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=58.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh---c-CCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS---N-APIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~-~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
..|.+||.+-+.+-|.|++..+. .+.++.+.+++|+.+.......+ + ....++|||- +|.+| +++.+
T Consensus 386 ~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTd-----ll~RG-iDf~g 456 (593)
T KOG0344|consen 386 FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTD-----LLARG-IDFKG 456 (593)
T ss_pred CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccCeeEEEehh-----hhhcc-ccccC
Confidence 56889999999999999998887 45688999999986654433322 2 3478999985 34544 88999
Q ss_pred ceEEEecCcc
Q 014666 309 IRYVVLDEAD 318 (420)
Q Consensus 309 l~~lVlDEaD 318 (420)
+.+||.++.-
T Consensus 457 vn~VInyD~p 466 (593)
T KOG0344|consen 457 VNLVINYDFP 466 (593)
T ss_pred cceEEecCCC
Confidence 9999997654
No 344
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=90.47 E-value=1.6 Score=44.65 Aligned_cols=43 Identities=16% Similarity=0.082 Sum_probs=30.0
Q ss_pred CCCCCcHHHHhhHHH----HhcCCcEEEEccCCCCchhHhHHHHHHH
Q 014666 160 GLFVPSEIQCVGIPA----VLNGKSVVLSSGSGSGRTLAYLLPLVQV 202 (420)
Q Consensus 160 g~~~pt~iQ~~~i~~----i~~g~dvl~~a~TGsGKTla~~lp~l~~ 202 (420)
-|...+|-|..-.-. +-.+.+.++..|+|+|||.+.+--++..
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aY 59 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAY 59 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHH
Confidence 455667777654432 3356789999999999999866555543
No 345
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.41 E-value=2.5 Score=39.71 Aligned_cols=145 Identities=17% Similarity=0.101 Sum_probs=75.7
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC---cHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT---TEESADQGFHM 253 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P---treLa~Qi~~~ 253 (420)
.|.=+++.|++|.|||...+--+++.... .+..+++++. ..+++..+...
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~---------------------------~~~~vly~SlEm~~~~l~~R~la~ 70 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALN---------------------------GGYPVLYFSLEMSEEELAARLLAR 70 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHT---------------------------TSSEEEEEESSS-HHHHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHh---------------------------cCCeEEEEcCCCCHHHHHHHHHHH
Confidence 34568999999999996655444442110 1345777764 24444433222
Q ss_pred HHHhhccCCCceecccCCCChHHHHH-------HhcCCCcEEEeChh----HHHhchhcCcccCCCceEEEecCcchhhc
Q 014666 254 AKFISHCARLDSSMENGGVSSKALED-------VSNAPIGMLIATPS----EVLQHIEDRNVSCDDIRYVVLDEADTLFD 322 (420)
Q Consensus 254 ~~~l~~~~~i~~~~~~gg~~~~~~~~-------~l~~~~~IlV~TP~----~L~~~l~~~~~~l~~l~~lVlDEaD~~l~ 322 (420)
. .++....+..|.-...... .+....-.+..+|. .|...+..-......+++||||=.+.|-.
T Consensus 71 ~------s~v~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 71 L------SGVPYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp H------HTSTHHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred h------hcchhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 2 2333333333322222111 22232323344444 45544443222237789999999998755
Q ss_pred c----CCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 323 R----GFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 323 ~----~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
. +.+..+..|...|...... -++.+|++|..-
T Consensus 145 ~~~~~~~~~~~~~i~~~Lk~lA~~---~~i~vi~~sQln 180 (259)
T PF03796_consen 145 EDSSDNRRQEIGEISRELKALAKE---LNIPVIALSQLN 180 (259)
T ss_dssp SCSSSCCHHHHHHHHHHHHHHHHH---HTSEEEEEEEBS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH---cCCeEEEccccC
Confidence 3 3567777776666554422 256666666543
No 346
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.37 E-value=1.4 Score=45.83 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=20.3
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
+...++|||||+|.|- ...+..++..+..
T Consensus 114 ~~~~kVVIIDEad~ls----~~a~naLLk~LEe 142 (504)
T PRK14963 114 RGGRKVYILDEAHMMS----KSAFNALLKTLEE 142 (504)
T ss_pred cCCCeEEEEECccccC----HHHHHHHHHHHHh
Confidence 4567899999999774 3445566666653
No 347
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.28 E-value=2.8 Score=42.21 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=28.7
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHH
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~ 366 (420)
....+++||||+|+|-.. ....++..|... +..-++++.+|-+..+..-+.
T Consensus 115 ~~~~kViiIDead~m~~~----aanaLLk~LEep------~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER----AANALLKAVEEP------PPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred cCCcEEEEEechhhcCHH----HHHHHHHHhhcC------CCCCeEEEEECChHHChHHHH
Confidence 356789999999999532 234455544321 123445555555555554433
No 348
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=90.27 E-value=0.61 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=15.2
Q ss_pred EEEccCCCCchhHhHHHHHHHh
Q 014666 182 VLSSGSGSGRTLAYLLPLVQVY 203 (420)
Q Consensus 182 l~~a~TGsGKTla~~lp~l~~i 203 (420)
++.++.|+|||.+.++-++..+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~ 22 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWA 22 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHH
Confidence 4678899999999887777643
No 349
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.25 E-value=0.47 Score=46.80 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=21.7
Q ss_pred HHHHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 172 IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 172 i~~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.-++..+.+++++|+||||||.. +-.++.
T Consensus 156 ~~~v~~~~nilI~G~tGSGKTTl-l~aLl~ 184 (344)
T PRK13851 156 HACVVGRLTMLLCGPTGSGKTTM-SKTLIS 184 (344)
T ss_pred HHHHHcCCeEEEECCCCccHHHH-HHHHHc
Confidence 33566889999999999999965 333444
No 350
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.19 E-value=1.8 Score=45.85 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=56.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.|+|+..|.+++..+... ++.+..++|+.........+ ....+|||||. .+ ...+++.+
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~-arGIDip~ 325 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VA-ARGLHIDG 325 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hh-hcCCCccC
Confidence 3567999999999999998877654 67899999998876554433 34589999995 22 24677889
Q ss_pred ceEEEecCc
Q 014666 309 IRYVVLDEA 317 (420)
Q Consensus 309 l~~lVlDEa 317 (420)
++++|.-+.
T Consensus 326 V~~VInyd~ 334 (572)
T PRK04537 326 VKYVYNYDL 334 (572)
T ss_pred CCEEEEcCC
Confidence 999886543
No 351
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=4.4 Score=41.81 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHhhHH----HHhcC--------CcEEEEccCCCCchhHhH
Q 014666 146 LGLKAEMIKAVEKMGLFVPSEIQCVGIP----AVLNG--------KSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 146 l~l~~~l~~~l~~~g~~~pt~iQ~~~i~----~i~~g--------~dvl~~a~TGsGKTla~~ 196 (420)
||+++.-++.....|.-.-.+--...+. .+.+- ..+++.+|.|||||...+
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA 556 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA 556 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH
Confidence 6888888888887776433332222221 11111 359999999999996444
No 352
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.10 E-value=6.5 Score=38.28 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=93.6
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC--cHHHHHHHHHHHHHh
Q 014666 180 SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT--TEESADQGFHMAKFI 257 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P--treLa~Qi~~~~~~l 257 (420)
-+++++-+|+|||.+..--+.. + ...+.++++.+- .|+-|... +..+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~-l---------------------------~~~g~~VllaA~DTFRAaAiEQ---L~~w 189 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKY-L---------------------------KQQGKSVLLAAGDTFRAAAIEQ---LEVW 189 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHH-H---------------------------HHCCCeEEEEecchHHHHHHHH---HHHH
Confidence 4789999999999885543322 1 113455666543 26555332 3333
Q ss_pred hccCCCceecc-cCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhcc-CCHHHHHHHHHH
Q 014666 258 SHCARLDSSME-NGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR-GFGPEISKILNP 335 (420)
Q Consensus 258 ~~~~~i~~~~~-~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~-~~~~~l~~Il~~ 335 (420)
+...|+.+... .|+.+.. -..+.++.. .-.++++|++|=|-||-.. +..+++..|.+-
T Consensus 190 ~er~gv~vI~~~~G~DpAa------------------VafDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV 249 (340)
T COG0552 190 GERLGVPVISGKEGADPAA------------------VAFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRV 249 (340)
T ss_pred HHHhCCeEEccCCCCCcHH------------------HHHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHH
Confidence 44446555442 2332221 123333321 1244566666666666433 356777887776
Q ss_pred chhhhcccCCCCceEEEE-eecccchHHHHHHHHhhcchh-------ccCCCeeeeeeecccc-----eEEeccccHHHH
Q 014666 336 LKDSALKSNGQGFQTILV-TAAIAEMLGEQLSSLMECLER-------DNAGKVTAMLLEMDQA-----EVFDLTESQDAL 402 (420)
Q Consensus 336 l~~~~~~~~~~~~Q~v~~-SATl~~~v~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~-----~~~~~~~~~~~~ 402 (420)
+.... ...+..++++ =||...+-.+.++.|-.-... +........++.|.+. ..+-+.+..+++
T Consensus 250 ~~k~~---~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL 326 (340)
T COG0552 250 IKKDD---PDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDL 326 (340)
T ss_pred hcccc---CCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEEecccCCCcceeeeHHHHhCCCEEEEeCCCChhhc
Confidence 65322 1223456665 999999988888776654322 2345566666776665 233445666655
Q ss_pred HH
Q 014666 403 KK 404 (420)
Q Consensus 403 ~~ 404 (420)
..
T Consensus 327 ~~ 328 (340)
T COG0552 327 RP 328 (340)
T ss_pred cc
Confidence 43
No 353
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=90.09 E-value=1.5 Score=43.51 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCchhHhHH
Q 014666 179 KSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~l 197 (420)
.+.|+-+|.|+|||...-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4799999999999976544
No 354
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.02 E-value=1.2 Score=47.16 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=27.4
Q ss_pred HHHCCCCCCcHHHHhhHHHHhc--CCcEEEEccCCCCchhHhHHHHHHH
Q 014666 156 VEKMGLFVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQV 202 (420)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~i~~--g~dvl~~a~TGsGKTla~~lp~l~~ 202 (420)
|.++|| .+-|...|..+.. +.-++++||||||||.+. ..++..
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~ 339 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNI 339 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHh
Confidence 455665 3455555554432 446889999999999774 445553
No 355
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.96 E-value=0.58 Score=50.53 Aligned_cols=44 Identities=14% Similarity=0.269 Sum_probs=36.5
Q ss_pred CceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
+--|||||+.|.+-+.-....+..++++.|. +.+.|+.|=+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~--------~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPE--------NLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCC--------CeEEEEEeccCCC
Confidence 3469999999999888888889999999884 7888888877664
No 356
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.96 E-value=0.76 Score=44.45 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
....+++||||||.|-. +....++..+... +....+++.+.-+..+..-++.-|.
T Consensus 107 ~~~~kviiidead~mt~----~A~nallk~lEep------~~~~~~il~~n~~~~il~tI~SRc~ 161 (325)
T COG0470 107 EGGYKVVIIDEADKLTE----DAANALLKTLEEP------PKNTRFILITNDPSKILPTIRSRCQ 161 (325)
T ss_pred CCCceEEEeCcHHHHhH----HHHHHHHHHhccC------CCCeEEEEEcCChhhccchhhhcce
Confidence 36789999999999953 3333333333321 2334555555555554444444433
No 357
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.91 E-value=0.63 Score=50.78 Aligned_cols=45 Identities=13% Similarity=0.281 Sum_probs=27.4
Q ss_pred eEEEecCcchhhccCC----HHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 310 RYVVLDEADTLFDRGF----GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 310 ~~lVlDEaD~~l~~~~----~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
.+|+|||+|.++..|. ..++..++..+-. .-++.++.||-+++..
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--------~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--------SGKIRVIGSTTYQEFS 328 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--------CCCeEEEecCChHHHH
Confidence 4899999999976542 2344445554432 3356666677665543
No 358
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.90 E-value=2.1 Score=42.79 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=17.5
Q ss_pred cCCcEEEEccCCCCchhHhHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~ 199 (420)
.|.-+++.+++|+|||...+--+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a 103 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVA 103 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 45678999999999997644333
No 359
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.84 E-value=0.3 Score=49.00 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=19.7
Q ss_pred cEEEEccCCCCchhHhHHHHHH
Q 014666 180 SVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~l~ 201 (420)
++++.|+||||||.++++|-+-
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll 22 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL 22 (384)
T ss_pred CeeEecCCCCCCccEEEccchh
Confidence 4789999999999999999765
No 360
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=89.79 E-value=0.8 Score=50.03 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=28.8
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.+++-|..++.+. ...++|.|..|||||.+..-=+..
T Consensus 4 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~ 40 (726)
T TIGR01073 4 HLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAH 40 (726)
T ss_pred ccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999988753 467999999999999885544443
No 361
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.74 E-value=2.7 Score=44.45 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCchhHhHH
Q 014666 179 KSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~l 197 (420)
+-+|+.||.|+|||....+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999976444
No 362
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.71 E-value=2.2 Score=41.15 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
.+++.|++|+|||.+.
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5999999999999664
No 363
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=89.66 E-value=1.5 Score=44.17 Aligned_cols=17 Identities=41% Similarity=0.612 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhH
Q 014666 178 GKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla 194 (420)
.+.+++.||+|+|||+.
T Consensus 165 p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCceEEECCCCCChHHH
Confidence 36799999999999975
No 364
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.65 E-value=2.6 Score=44.70 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=14.7
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
-+|+.||.|+|||.+..+
T Consensus 40 ayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 40 AFLFTGARGVGKTSTARI 57 (576)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999977544
No 365
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.47 E-value=3.9 Score=37.55 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|..+++.+++|+|||...+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred CCeEEEEECCCCCChHHHHH
Confidence 46789999999999986543
No 366
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=1.4 Score=42.59 Aligned_cols=141 Identities=17% Similarity=0.105 Sum_probs=73.0
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE-EEEcC-----------c
Q 014666 176 LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA-IVLCT-----------T 243 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-Lil~P-----------t 243 (420)
.-++=+++.||+|+|||. .+-.+.+++.-. .....+++ ||=.. +
T Consensus 175 t~NRliLlhGPPGTGKTS-LCKaLaQkLSIR-----------------------~~~~y~~~~liEinshsLFSKWFsES 230 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTS-LCKALAQKLSIR-----------------------TNDRYYKGQLIEINSHSLFSKWFSES 230 (423)
T ss_pred eeeeEEEEeCCCCCChhH-HHHHHHHhheee-----------------------ecCccccceEEEEehhHHHHHHHhhh
Confidence 345668999999999994 355566644211 11122222 22222 2
Q ss_pred HHHHHHHHHHHHHhhccCCCceecccCC---------------CCh---------HHHHHHhcCCCcEEEeChhHHHhch
Q 014666 244 EESADQGFHMAKFISHCARLDSSMENGG---------------VSS---------KALEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 244 reLa~Qi~~~~~~l~~~~~i~~~~~~gg---------------~~~---------~~~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
--|+.++++.+..+....+.-++++... .+. -.|...+++.++++|-|..-|.+-
T Consensus 231 gKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~s- 309 (423)
T KOG0744|consen 231 GKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDS- 309 (423)
T ss_pred hhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHH-
Confidence 3366677777777766555444433321 111 114455666677776665555443
Q ss_pred hcCcccCCCceEEEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 300 EDRNVSCDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
++.-.+|-||-..--| -...+..|+..+-.-. -..++|.+-+
T Consensus 310 ---------iD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL-----~~~gIi~~~~ 353 (423)
T KOG0744|consen 310 ---------IDVAFVDRADIVFYVGPPTAEAIYEILKSCIEEL-----ISSGIILFHQ 353 (423)
T ss_pred ---------HHHHhhhHhhheeecCCccHHHHHHHHHHHHHHH-----HhcCeeeeec
Confidence 4455667888654444 2333444443321111 1356777666
No 367
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=89.33 E-value=9.2 Score=37.86 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=16.3
Q ss_pred HHhcCC---cEEEEccCCCCchhH
Q 014666 174 AVLNGK---SVVLSSGSGSGRTLA 194 (420)
Q Consensus 174 ~i~~g~---dvl~~a~TGsGKTla 194 (420)
.+..|+ -+++.|+.|+|||..
T Consensus 38 a~~~grl~ha~L~~G~~G~GKttl 61 (351)
T PRK09112 38 AYREGKLHHALLFEGPEGIGKATL 61 (351)
T ss_pred HHHcCCCCeeEeeECCCCCCHHHH
Confidence 444554 599999999999864
No 368
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.33 E-value=1.6 Score=47.13 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=19.1
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
...-+++||||||.|- ......++..|.
T Consensus 116 ~g~~KV~IIDEa~~LT----~~A~NALLKtLE 143 (725)
T PRK07133 116 QSKYKIYIIDEVHMLS----KSAFNALLKTLE 143 (725)
T ss_pred cCCCEEEEEEChhhCC----HHHHHHHHHHhh
Confidence 3677899999999874 234455555554
No 369
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.21 E-value=1.6 Score=46.54 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=20.4
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
+..-+++||||+|.|-. .....++..|..
T Consensus 125 ~~~~KVvIIdEad~Lt~----~a~naLLK~LEe 153 (620)
T PRK14954 125 KGRYRVYIIDEVHMLST----AAFNAFLKTLEE 153 (620)
T ss_pred cCCCEEEEEeChhhcCH----HHHHHHHHHHhC
Confidence 46678999999998853 345556666653
No 370
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=89.15 E-value=3 Score=40.65 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=24.2
Q ss_pred CCcHHHHhhHHHHh----cC---CcEEEEccCCCCchhH
Q 014666 163 VPSEIQCVGIPAVL----NG---KSVVLSSGSGSGRTLA 194 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~----~g---~dvl~~a~TGsGKTla 194 (420)
.++|||...+..+. .| +-+++.|+.|.||+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~l 41 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESL 41 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH
Confidence 36788888887654 34 3599999999999843
No 371
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.04 E-value=0.87 Score=50.07 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|..+++.+|+|+|||...
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999653
No 372
>PTZ00293 thymidine kinase; Provisional
Probab=88.99 E-value=2.7 Score=38.32 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~l 197 (420)
|+=.++.||.+||||.-.+-
T Consensus 4 G~i~vi~GpMfSGKTteLLr 23 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR 23 (211)
T ss_pred eEEEEEECCCCChHHHHHHH
Confidence 44468899999999965443
No 373
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=88.97 E-value=4.1 Score=42.85 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=85.1
Q ss_pred CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhh
Q 014666 179 KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFIS 258 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~ 258 (420)
+--++--|---|||+ |++|++..++.. -.+.++.+++.-|.-++-++..+..-.
T Consensus 203 kaTVFLVPRRHGKTW-f~VpiIsllL~s-------------------------~~gI~IGYvAHqKhvs~~Vf~EI~~~l 256 (668)
T PHA03372 203 KATVFLVPRRHGKTW-FIIPIISFLLKN-------------------------IIGISIGYVAHQKHVSQFVLKEVEFRC 256 (668)
T ss_pred cceEEEecccCCcee-hHHHHHHHHHHh-------------------------hcCceEEEEeeHHHHHHHHHHHHHHHH
Confidence 346777788999996 588888755432 246779999999988888777775433
Q ss_pred ccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc-----hhcCcccCCCceEEEecCcchhhccCCHHHHHHHH
Q 014666 259 HCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH-----IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKIL 333 (420)
Q Consensus 259 ~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~-----l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il 333 (420)
.. .+++.... -.++-.|.+.-||.=-.. .+.+.+.=++..+|++|||+-+ ..+.+..|+
T Consensus 257 rr-------wF~~~~vi-----~~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI----~~~a~~til 320 (668)
T PHA03372 257 RR-------MFPRKHTI-----ENKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI----KKDAFNTIL 320 (668)
T ss_pred hh-------hcCcccee-----eecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc----CHHHHHHhh
Confidence 21 12211110 012235666666532111 1122344467899999999976 366788888
Q ss_pred HHchhhhcccCCCCceEEEEeecccc
Q 014666 334 NPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 334 ~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
..|.- .+..+|..|+|-+.
T Consensus 321 gfm~q-------~~~KiIfISS~Nsg 339 (668)
T PHA03372 321 GFLAQ-------NTTKIIFISSTNTT 339 (668)
T ss_pred hhhcc-------cCceEEEEeCCCCC
Confidence 88864 57899999999654
No 374
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=1.3 Score=46.38 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=30.6
Q ss_pred CceEEEecCcchhhcc----C---CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 308 DIRYVVLDEADTLFDR----G---FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~----~---~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
.-+++.|||+|.|.-. + -..-+..+|.-|-.. ....++.++-||--+++..
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-----~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-----EERRGVYVIAATNRPDIID 661 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc-----ccccceEEEeecCCCcccc
Confidence 3467889999998632 1 122234444443221 1357889999998776543
No 375
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.93 E-value=1.4 Score=43.24 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=21.1
Q ss_pred HHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
++..+.+++++|+||||||.. +-.++.
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~ 182 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALR 182 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHh
Confidence 456789999999999999965 344454
No 376
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.92 E-value=0.49 Score=43.47 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=12.3
Q ss_pred EEEEccCCCCchhH
Q 014666 181 VVLSSGSGSGRTLA 194 (420)
Q Consensus 181 vl~~a~TGsGKTla 194 (420)
+++.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999975
No 377
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.90 E-value=1.9 Score=46.01 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=19.5
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchh
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
...+++||||||.|- ......++..|..
T Consensus 120 ~~~KViIIDEad~Lt----~~a~naLLK~LEe 147 (620)
T PRK14948 120 ARWKVYVIDECHMLS----TAAFNALLKTLEE 147 (620)
T ss_pred CCceEEEEECccccC----HHHHHHHHHHHhc
Confidence 557899999999884 3345556666553
No 378
>PRK13764 ATPase; Provisional
Probab=88.83 E-value=0.55 Score=49.64 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=19.9
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHHHHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAYLLPLVQVY 203 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~lp~l~~i 203 (420)
..+++++++++||||||.. +-.++..+
T Consensus 255 ~~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred hcCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 3467899999999999964 34455533
No 379
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=88.79 E-value=1.1 Score=49.92 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=36.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCC---CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLF---VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~---~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
....|+++|.-..++.-|+++-+. +|.-+|.. .|..-+-+++++|.|+|||+..
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~---~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF---NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc---ccCCCcceeecCCCCCchhHHH
Confidence 355799999888888888886432 22111111 2334577999999999999863
No 380
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=88.76 E-value=2.7 Score=36.62 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=33.7
Q ss_pred CCCceEEEecCcchhhccCC--HHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHH
Q 014666 306 CDDIRYVVLDEADTLFDRGF--GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 365 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~--~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~ 365 (420)
...+++|||||+-..++.++ .+.+..++..-+ ...-+|+.+-..|+++.+.+
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp--------~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP--------EDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC--------CCCEEEEECCCCCHHHHHhC
Confidence 45689999999998887774 344444554333 24455666666777776654
No 381
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.76 E-value=0.51 Score=46.80 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.+.-+++++|||||||... -.++.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~ 156 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIR 156 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHH
Confidence 5678999999999999763 33444
No 382
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.66 E-value=1.8 Score=45.64 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=19.8
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
....+++||||+|.|- ......++..+..
T Consensus 117 ~~~~KVvIIDEa~~Ls----~~a~naLLK~LEe 145 (563)
T PRK06647 117 SSRYRVYIIDEVHMLS----NSAFNALLKTIEE 145 (563)
T ss_pred cCCCEEEEEEChhhcC----HHHHHHHHHhhcc
Confidence 4678999999999884 3344555655543
No 383
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=88.57 E-value=0.21 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCCchhHhHHHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
++-+++.||.|+|||.. +--++.
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~ 42 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFIN 42 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHH
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHH
Confidence 47799999999999974 333433
No 384
>PF14516 AAA_35: AAA-like domain
Probab=88.52 E-value=4.3 Score=39.84 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=26.2
Q ss_pred HHHHhhHHHHhc-CCcEEEEccCCCCchhH
Q 014666 166 EIQCVGIPAVLN-GKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 166 ~iQ~~~i~~i~~-g~dvl~~a~TGsGKTla 194 (420)
|+...++..+.+ |.-+.+.||-.+|||..
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl 47 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL 47 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH
Confidence 588999998887 99999999999999965
No 385
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=88.46 E-value=7 Score=38.42 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=23.8
Q ss_pred CcHHHHhhHHHHh----cC---CcEEEEccCCCCchhH
Q 014666 164 PSEIQCVGIPAVL----NG---KSVVLSSGSGSGRTLA 194 (420)
Q Consensus 164 pt~iQ~~~i~~i~----~g---~dvl~~a~TGsGKTla 194 (420)
.+|||...|..+. .| +-+++.||.|.||+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~l 40 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHH
Confidence 5788888887654 33 3588999999999854
No 386
>PRK08506 replicative DNA helicase; Provisional
Probab=88.43 E-value=3.5 Score=42.56 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=30.1
Q ss_pred CCceEEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 307 DDIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
..++++|||=.+.|-..+ ...++..|.+.|..... .-++.++++| -++..+
T Consensus 301 ~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAk---el~ipVi~ls-QLnR~~ 355 (472)
T PRK08506 301 PEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLAR---ELDIPIIALS-QLNRSL 355 (472)
T ss_pred CCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHH---HhCCcEEEEe-ecCcch
Confidence 358999999998774322 23456666666544332 1256677776 444433
No 387
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.37 E-value=2 Score=45.00 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=22.9
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHc
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPL 336 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l 336 (420)
+.+-+++|+||+-.-+|......+...+..+
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 5567889999998888776666666666544
No 388
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.34 E-value=1.9 Score=43.81 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=54.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.|+|+..|..++..+... ++.+..++|+.........+ ...++|||||. .+ ..++++.++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~-~rGiDip~v 324 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VA-ARGLHIPAV 324 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hh-hcCCCcccc
Confidence 457999999999999888877653 78899999998766554433 34689999994 22 356778889
Q ss_pred eEEEec
Q 014666 310 RYVVLD 315 (420)
Q Consensus 310 ~~lVlD 315 (420)
+++|.-
T Consensus 325 ~~VI~~ 330 (423)
T PRK04837 325 THVFNY 330 (423)
T ss_pred CEEEEe
Confidence 887754
No 389
>PRK05748 replicative DNA helicase; Provisional
Probab=88.34 E-value=5.5 Score=40.79 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=28.3
Q ss_pred CceEEEecCcchhhccC-----CHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 308 DIRYVVLDEADTLFDRG-----FGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~-----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
++++||||=.+.|-..+ ....+..|.+.|...... -++.+|++|..
T Consensus 314 ~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke---~~i~vi~lsQl 364 (448)
T PRK05748 314 GLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKE---LKVPVIALSQL 364 (448)
T ss_pred CCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHH---hCCeEEEeccc
Confidence 68899999999774221 234566777666443321 25667777654
No 390
>PRK08840 replicative DNA helicase; Provisional
Probab=88.32 E-value=6.1 Score=40.71 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=31.2
Q ss_pred CceEEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 308 DIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
.+++||||=.+.|-..+ ...++..|.+.|...... -++.+|++| -++..+
T Consensus 329 ~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke---l~ipVi~Ls-QLnR~~ 382 (464)
T PRK08840 329 GLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKE---LNVPVVALS-QLNRSL 382 (464)
T ss_pred CCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHH---hCCeEEEEE-ecCccc
Confidence 58899999999774222 234567777666554422 356777776 444443
No 391
>PRK09087 hypothetical protein; Validated
Probab=88.27 E-value=1.9 Score=39.89 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=25.4
Q ss_pred EEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 311 ~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
+|+||++|.+- .-...+..++..+.. .+.++|+.|.+-|+.
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~-------~g~~ilits~~~p~~ 130 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQ-------AGTSLLMTSRLWPSS 130 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHh-------CCCeEEEECCCChHH
Confidence 79999999762 335666677766653 245555555554543
No 392
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.24 E-value=0.49 Score=44.40 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=14.6
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
=||+.++|||||+.+.+-
T Consensus 129 LviiVGaTGSGKSTtmAa 146 (375)
T COG5008 129 LVIIVGATGSGKSTTMAA 146 (375)
T ss_pred eEEEECCCCCCchhhHHH
Confidence 478999999999977443
No 393
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=88.22 E-value=1.1 Score=47.26 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
+.+=.+||+|||-.-+|......+...+..+.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 45568999999999988887777777776554
No 394
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=88.18 E-value=0.74 Score=40.89 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=15.7
Q ss_pred HhcCCcEEEEccCCCCchhHh
Q 014666 175 VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~ 195 (420)
+.+++++++.|++|+|||...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLA 64 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHH
Confidence 446889999999999999653
No 395
>PRK07004 replicative DNA helicase; Provisional
Probab=88.18 E-value=3.8 Score=42.16 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=31.0
Q ss_pred CceEEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 308 DIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
.+++||||=.+.|-..+ ...++..|.+.|...... -++.++++|. |+..
T Consensus 324 ~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAke---l~ipVi~lsQ-LnR~ 376 (460)
T PRK07004 324 KLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKE---LDVPVIALSQ-LNRG 376 (460)
T ss_pred CCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHH---hCCeEEEEec-cChh
Confidence 58899999998775322 344577777777654422 2567777763 4433
No 396
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=88.17 E-value=0.95 Score=42.68 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
++.++++.|++|+|||...
T Consensus 104 ~~~nl~l~G~~G~GKThLa 122 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA 122 (254)
T ss_pred cCCcEEEECCCCCcHHHHH
Confidence 6789999999999999653
No 397
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.14 E-value=0.54 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCchhHhHHHHHH
Q 014666 179 KSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.++++.|+||||||..|++|.+-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll 67 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL 67 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH
Confidence 47999999999999999999864
No 398
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.12 E-value=6.1 Score=34.42 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=13.8
Q ss_pred EEEEccCCCCchhHhHH
Q 014666 181 VVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 181 vl~~a~TGsGKTla~~l 197 (420)
+++.+++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999987443
No 399
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.95 E-value=18 Score=33.05 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=48.4
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec---ccchHHHHHHHHhhcchhccCCCeee
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA---IAEMLGEQLSSLMECLERDNAGKVTA 382 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT---l~~~v~~~~~~~~~~~~~~~~~~~~~ 382 (420)
..+-+++|||=...+.-..-..++..++..+.+.+ ..-.+|++++. +++++.--++..+.-+.....-.+..
T Consensus 121 ~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~-----d~gKvIilTvhp~~l~e~~~~rirs~~d~~l~L~~~~~Gg 195 (235)
T COG2874 121 RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLS-----DLGKVIILTVHPSALDEDVLTRIRSACDVYLRLRLEELGG 195 (235)
T ss_pred hhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHH-----hCCCEEEEEeChhhcCHHHHHHHHHhhheeEEEEhhhhCC
Confidence 45567899999987764444556777777776654 35579999986 45666666666666554443333333
Q ss_pred eeee
Q 014666 383 MLLE 386 (420)
Q Consensus 383 ~~~~ 386 (420)
....
T Consensus 196 ~~~~ 199 (235)
T COG2874 196 DLIK 199 (235)
T ss_pred eeeE
Confidence 3333
No 400
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.90 E-value=1.8 Score=45.27 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.6
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
-+|+.||.|+|||.+..+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999976444
No 401
>PRK10867 signal recognition particle protein; Provisional
Probab=87.88 E-value=5.2 Score=40.78 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=15.7
Q ss_pred cEEEEccCCCCchhHhHHHH
Q 014666 180 SVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~ 199 (420)
-+++++++|+|||.+..--+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 47899999999998754433
No 402
>PF05729 NACHT: NACHT domain
Probab=87.84 E-value=2.8 Score=35.72 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=13.2
Q ss_pred EEEEccCCCCchhHh
Q 014666 181 VVLSSGSGSGRTLAY 195 (420)
Q Consensus 181 vl~~a~TGsGKTla~ 195 (420)
+++.|+.|+|||...
T Consensus 3 l~I~G~~G~GKStll 17 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL 17 (166)
T ss_pred EEEECCCCCChHHHH
Confidence 789999999999754
No 403
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.84 E-value=3 Score=45.65 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=30.7
Q ss_pred ccccccCCCCHHHHHHHHHC---CCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhH
Q 014666 140 VSSFQELGLKAEMIKAVEKM---GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla 194 (420)
..+|++++-....++.+.++ -+..|--++.. .+..++.+++.||+|+|||+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~---gi~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHL---GIEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCceEEEECCCCCChHHH
Confidence 45788887666666555442 11111111111 123467899999999999965
No 404
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=87.83 E-value=2.5 Score=42.94 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=54.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.|+|++-|..++..+.. .++.+..++|+.........+ ...++|||||- .+ ..++++.++
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~~-~~GiDip~v 314 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----VA-ARGIDIDDV 314 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----cc-ccCccCCCC
Confidence 46899999999999998888876 378899999988876554433 34589999994 23 345678899
Q ss_pred eEEEe
Q 014666 310 RYVVL 314 (420)
Q Consensus 310 ~~lVl 314 (420)
.++|.
T Consensus 315 ~~VI~ 319 (434)
T PRK11192 315 SHVIN 319 (434)
T ss_pred CEEEE
Confidence 99884
No 405
>CHL00176 ftsH cell division protein; Validated
Probab=87.73 E-value=1.3 Score=47.46 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
+.+++.+|+|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999753
No 406
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.68 E-value=4.9 Score=40.92 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=27.2
Q ss_pred CceEEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 308 DIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
.+++||||=.+.|-..+ ...++..|.+.|...... -++-++++|-
T Consensus 305 ~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e---~~i~vi~lsq 353 (434)
T TIGR00665 305 GLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKE---LNVPVIALSQ 353 (434)
T ss_pred CCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHH---hCCeEEEEec
Confidence 47899999988774322 234566666666543211 2566676664
No 407
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.65 E-value=3.7 Score=45.87 Aligned_cols=43 Identities=9% Similarity=0.228 Sum_probs=31.3
Q ss_pred ceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 309 l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
=-+||||++|.+-+......+..++..++ .+..+|+.|-+.|+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~--------~~~~lv~~sR~~~~ 164 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQP--------ENLTLVVLSRNLPP 164 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCC--------CCeEEEEEeCCCCC
Confidence 35899999998855555667778887775 36778787777543
No 408
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=87.63 E-value=2.1 Score=43.80 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=54.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh---cC-CCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS---NA-PIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
..|.+||.+.|+.-|.-+...+.+. +++++.++||.........| +. ..+|+|||--. .++++..+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvA------gRGIDIpn 585 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVA------GRGIDIPN 585 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEeccc------ccCCCCCc
Confidence 4688999999999988877777765 68899999998876655444 33 57999999742 34677888
Q ss_pred ceEEE
Q 014666 309 IRYVV 313 (420)
Q Consensus 309 l~~lV 313 (420)
+.+||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 88876
No 409
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.61 E-value=8.7 Score=34.03 Aligned_cols=29 Identities=17% Similarity=0.420 Sum_probs=20.0
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
...-+++||||+|.|-. .....++..+..
T Consensus 94 ~~~~kviiide~~~l~~----~~~~~Ll~~le~ 122 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNE----AAANALLKTLEE 122 (188)
T ss_pred cCCeEEEEEechhhhCH----HHHHHHHHHhcC
Confidence 45678999999999853 344556665543
No 410
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.50 E-value=0.6 Score=46.54 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=18.1
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQV 202 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~ 202 (420)
.+..+++++|||||||... -.++..
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~ 172 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQH 172 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHH
Confidence 3457899999999999753 445543
No 411
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.46 E-value=2.1 Score=44.33 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=18.5
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
...-+++||||||.|-. .....++..+.
T Consensus 117 ~~~~KVvIIDEad~Lt~----~a~naLLk~LE 144 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK----EAFNALLKTLE 144 (486)
T ss_pred cCCeeEEEEEChhhcCH----HHHHHHHHHHh
Confidence 45678999999997742 23344555554
No 412
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.46 E-value=2.2 Score=40.49 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=26.1
Q ss_pred HHHCCCCCCcHHHHhhHHHHh-c-CCcEEEEccCCCCchhHhHHHHHH
Q 014666 156 VEKMGLFVPSEIQCVGIPAVL-N-GKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~i~-~-g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
|..+|| ++-|...|..+. . +.-+++.++||||||... ..++.
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~ 102 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALS 102 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHh
Confidence 455564 444555555433 3 346899999999999764 33444
No 413
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.27 E-value=1.6 Score=42.08 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCchhH
Q 014666 179 KSVVLSSGSGSGRTLA 194 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla 194 (420)
..+++.||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999954
No 414
>PRK08006 replicative DNA helicase; Provisional
Probab=87.24 E-value=8.3 Score=39.80 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=32.1
Q ss_pred CceEEEecCcchhhcc----CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 308 DIRYVVLDEADTLFDR----GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~----~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
.+++||||=.+.|-.. ....++..|.+.|...... -++.+|++| -|+..+
T Consensus 336 ~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke---l~ipVi~Ls-QLnR~~ 389 (471)
T PRK08006 336 GLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE---LQVPVVALS-QLNRSL 389 (471)
T ss_pred CCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH---hCCeEEEEE-ecCccc
Confidence 5899999999877422 2344677777776654432 356778876 444443
No 415
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=87.15 E-value=1.7 Score=42.89 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhHHH-HhcCCcEEEEccCCCCchhHh
Q 014666 150 AEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ~~~i~~-i~~g~dvl~~a~TGsGKTla~ 195 (420)
..-+..|.+.|+ +++.+...+.. +..+.+++++++||||||..+
T Consensus 151 ~~tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 151 TFTLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL 195 (340)
T ss_pred cCCHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH
Confidence 334566667776 45666666664 556789999999999998653
No 416
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.08 E-value=4.9 Score=42.94 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=30.5
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~ 369 (420)
+..-+++||||||.|-. .....++..|... +..-+++|.+|-...+...+++.|
T Consensus 119 ~~~~KVvIIdea~~Ls~----~a~naLLK~LEep------p~~tifIL~tt~~~kIl~tI~SRc 172 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEP------PSYAIFILATTEKHKILPTILSRC 172 (614)
T ss_pred cCCcEEEEEECcccCCH----HHHHHHHHHHhCC------CCCeEEEEEeCCchhchHHHHhhh
Confidence 46789999999998842 3444555555431 133345565654444444333333
No 417
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=2.1 Score=44.12 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=37.4
Q ss_pred EEEeCh-hHHHhchhcCcccCCCceEEEecCcchhhccCCH-------HHHHHHHHHchhhhcccCCCCceEEEEeecc-
Q 014666 287 MLIATP-SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFG-------PEISKILNPLKDSALKSNGQGFQTILVTAAI- 357 (420)
Q Consensus 287 IlV~TP-~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~-------~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl- 357 (420)
++||-- -|+.+++....- .--+.+.|||.|.+-..-.. ..|.+++.-+... .++--+|++.||-
T Consensus 376 m~VGvGArRVRdLF~aAk~--~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF-----~qNeGiIvigATNf 448 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKA--RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF-----KQNEGIIVIGATNF 448 (752)
T ss_pred hhhcccHHHHHHHHHHHHh--cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc-----CcCCceEEEeccCC
Confidence 444433 356666654322 23467889999988643211 1133344333221 1345789999994
Q ss_pred cchHHH
Q 014666 358 AEMLGE 363 (420)
Q Consensus 358 ~~~v~~ 363 (420)
|+.+..
T Consensus 449 pe~LD~ 454 (752)
T KOG0734|consen 449 PEALDK 454 (752)
T ss_pred hhhhhH
Confidence 554443
No 418
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.51 E-value=8.9 Score=38.20 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=18.8
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
....+++||||+|.|- ......++..+.
T Consensus 139 ~~~~kVviIDead~m~----~~aanaLLK~LE 166 (365)
T PRK07471 139 EGGWRVVIVDTADEMN----ANAANALLKVLE 166 (365)
T ss_pred cCCCEEEEEechHhcC----HHHHHHHHHHHh
Confidence 3567899999999884 344445555544
No 419
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.25 E-value=1.1 Score=48.84 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
..++|+.|++|+|||...
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999764
No 420
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=85.91 E-value=2.8 Score=44.96 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=55.6
Q ss_pred CCCeEEEEcCcHH--------HHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchh
Q 014666 233 MHPRAIVLCTTEE--------SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 233 ~~~~~Lil~Ptre--------La~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~ 300 (420)
.+.+++|++|+.+ -|.+++..+... ..++.+..++|+++.......+ ....+|||||. .+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~--~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vi- 518 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKA--FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VI- 518 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhh--CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----ee-
Confidence 3567999999864 233444444433 2478899999998876544433 34589999996 22
Q ss_pred cCcccCCCceEEEecCcchh
Q 014666 301 DRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 301 ~~~~~l~~l~~lVlDEaD~~ 320 (420)
..++++.+++++|+..++++
T Consensus 519 e~GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 519 EVGVDVPNATVMVIEDAERF 538 (630)
T ss_pred ecCcccCCCcEEEEeCCCcC
Confidence 34678899999999888864
No 421
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=85.67 E-value=4.4 Score=35.79 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=33.7
Q ss_pred CCceEEEecCcchhhccCC--HHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHH
Q 014666 307 DDIRYVVLDEADTLFDRGF--GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 365 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~--~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~ 365 (420)
..+++|||||+-..++.|+ .+++..++..-| ...-+|+..-..|+++.+++
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp--------~~~evVlTGR~~p~~l~e~A 148 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERP--------GHQHVIITGRGCPQDLLELA 148 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCC--------CCCEEEEECCCCCHHHHHhC
Confidence 5689999999998888884 334444454333 34556666666777776664
No 422
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=85.65 E-value=0.98 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=21.4
Q ss_pred CcEEEEccCCCCchhHhHHHHHH
Q 014666 179 KSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.++++.||||||||..|++|-+-
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL 181 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLL 181 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHH
Confidence 57999999999999999999876
No 423
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=85.42 E-value=1.1 Score=42.55 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=20.9
Q ss_pred HHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.+..+.+++++|+||||||... -.++.
T Consensus 123 ~v~~~~~ili~G~tGSGKTT~l-~all~ 149 (270)
T PF00437_consen 123 AVRGRGNILISGPTGSGKTTLL-NALLE 149 (270)
T ss_dssp CHHTTEEEEEEESTTSSHHHHH-HHHHH
T ss_pred ccccceEEEEECCCccccchHH-HHHhh
Confidence 4567899999999999999764 34444
No 424
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=85.23 E-value=0.69 Score=43.14 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=13.5
Q ss_pred EEccCCCCchhHhHHHHHHHh
Q 014666 183 LSSGSGSGRTLAYLLPLVQVY 203 (420)
Q Consensus 183 ~~a~TGsGKTla~~lp~l~~i 203 (420)
+.||.||||| +|+-.+-+++
T Consensus 1 ViGpaGSGKT-T~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKT-TFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHH-HHHHHHHHHH
T ss_pred CCCCCCCCHH-HHHHHHHHHH
Confidence 5789999998 4555555533
No 425
>PRK06321 replicative DNA helicase; Provisional
Probab=85.22 E-value=11 Score=38.90 Aligned_cols=47 Identities=26% Similarity=0.327 Sum_probs=29.0
Q ss_pred CCceEEEecCcchhhccC-------CHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 307 DDIRYVVLDEADTLFDRG-------FGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~-------~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
..+++||||=.+.|-..+ ...++..|.+.|...... -++.+|++|..
T Consensus 335 ~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAke---l~vpVi~lsQL 388 (472)
T PRK06321 335 YDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLARE---LNIPILCLSQL 388 (472)
T ss_pred cCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHH---hCCcEEEEeec
Confidence 358899999998775322 134566777777643321 25666666553
No 426
>PRK05636 replicative DNA helicase; Provisional
Probab=85.20 E-value=6.7 Score=40.87 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=31.7
Q ss_pred CCceEEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 307 DDIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
..+++||||=.+.|-... ...++..|.+.|...... -++.+|++| -|+..+
T Consensus 374 ~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke---l~ipVi~ls-QLnR~~ 428 (505)
T PRK05636 374 HDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKE---LDVPLIAIS-QLNRGP 428 (505)
T ss_pred cCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHH---hCCeEEEEe-ecCccc
Confidence 358999999999874221 234566777766654422 356777776 455443
No 427
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.13 E-value=5 Score=42.13 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.0
Q ss_pred cEEEEccCCCCchhHhHHH
Q 014666 180 SVVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp 198 (420)
-+|+.||.|+|||....+-
T Consensus 40 a~Lf~Gp~GvGKTTlAr~l 58 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLL 58 (546)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999765443
No 428
>PRK05595 replicative DNA helicase; Provisional
Probab=85.08 E-value=6 Score=40.48 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=31.6
Q ss_pred CCceEEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 307 DDIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
..+++||||=.+.|-..+ ...++..|.+.|...... -++.++++| -++..+
T Consensus 310 ~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke---~~i~vi~ls-QLnR~~ 364 (444)
T PRK05595 310 HGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKE---MECPVIALS-QLSRAP 364 (444)
T ss_pred cCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHH---hCCeEEEee-ccCcch
Confidence 358899999999875322 234577776666554422 256677775 455444
No 429
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=85.03 E-value=9.1 Score=35.45 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=16.2
Q ss_pred cEEEEccCCCCchhHhHHHHHH
Q 014666 180 SVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~l~ 201 (420)
-.++.|+.|+|||+..+--++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 3588999999999765544443
No 430
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=85.01 E-value=36 Score=36.94 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=54.5
Q ss_pred CCCeEEEEcCcHH--------HHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchh
Q 014666 233 MHPRAIVLCTTEE--------SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 233 ~~~~~Lil~Ptre--------La~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~ 300 (420)
.+.+++|+||+.+ -+..++..+... ..++++..++|++...+....+ ....+|||||.- +
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~--~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v-----i- 541 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEA--FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTV-----I- 541 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHH--CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcc-----e-
Confidence 4568999999653 233444444433 2247899999998776544433 345799999962 2
Q ss_pred cCcccCCCceEEEecCcchh
Q 014666 301 DRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 301 ~~~~~l~~l~~lVlDEaD~~ 320 (420)
..++++.+++++|+..++++
T Consensus 542 e~GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERF 561 (681)
T ss_pred eeCcccCCCcEEEEeCCCCC
Confidence 24678899999999988864
No 431
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.82 E-value=0.56 Score=40.64 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=16.7
Q ss_pred EEEEccCCCCchhHhHHHHHH
Q 014666 181 VVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 181 vl~~a~TGsGKTla~~lp~l~ 201 (420)
.|+.++.|||||..|......
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~ 25 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAP 25 (187)
T ss_pred EEEecCCCCCceeeeeccchh
Confidence 477899999999988765544
No 432
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=84.74 E-value=0.86 Score=40.13 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=29.7
Q ss_pred HHhcCCCcEEEeChhHHHhchhcCccc--CCCceEEEecCcchhhcc
Q 014666 279 DVSNAPIGMLIATPSEVLQHIEDRNVS--CDDIRYVVLDEADTLFDR 323 (420)
Q Consensus 279 ~~l~~~~~IlV~TP~~L~~~l~~~~~~--l~~l~~lVlDEaD~~l~~ 323 (420)
+.....++|||++-.-|++-..+..+. ..+-.+|||||||.+.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 444456899999998887664433321 234479999999988653
No 433
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=84.63 E-value=7.1 Score=40.10 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=18.2
Q ss_pred cCCcEEEEccCCCCchhHhHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l 200 (420)
.|.-+++.+++|+|||...+--+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~ 116 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVAC 116 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999976554433
No 434
>PTZ00110 helicase; Provisional
Probab=84.59 E-value=3.8 Score=43.18 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=53.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.|+|+.-|..+...+.. .++.+..++|+....+....+ .....|||||.- + ...+++.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv-----~-~rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDV-----A-SRGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcch-----h-hcCCCccc
Confidence 457899999999999998887764 367788889988766544332 235789999952 2 34677888
Q ss_pred ceEEEe
Q 014666 309 IRYVVL 314 (420)
Q Consensus 309 l~~lVl 314 (420)
+++||.
T Consensus 446 v~~VI~ 451 (545)
T PTZ00110 446 VKYVIN 451 (545)
T ss_pred CCEEEE
Confidence 888875
No 435
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=84.56 E-value=9.3 Score=39.51 Aligned_cols=122 Identities=12% Similarity=0.183 Sum_probs=89.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH---hcC-CCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV---SNA-PIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~---l~~-~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+-++||.+=|+-+|..+...+. ..|+++..++.+...-+.... |+. ..|+|||-- +|+ .++++..
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~----e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN-----LLR-EGLDiPE 514 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLK----ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLR-EGLDLPE 514 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHH----hcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeeh-----hhh-ccCCCcc
Confidence 45689999999988877655544 458999999998776554443 343 489999953 333 4577899
Q ss_pred ceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 309 l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
+.++.|=+|| ..||...-.+++..+.+...+. +-.+|+..-.++..++..+...-+
T Consensus 515 VsLVAIlDAD---KeGFLRse~SLIQtIGRAARN~---~GkvIlYAD~iT~sM~~Ai~ET~R 570 (663)
T COG0556 515 VSLVAILDAD---KEGFLRSERSLIQTIGRAARNV---NGKVILYADKITDSMQKAIDETER 570 (663)
T ss_pred eeEEEEeecC---ccccccccchHHHHHHHHhhcc---CCeEEEEchhhhHHHHHHHHHHHH
Confidence 9999988899 3578777777777766655544 448999999999888877655544
No 436
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=84.32 E-value=17 Score=35.63 Aligned_cols=87 Identities=13% Similarity=0.048 Sum_probs=45.1
Q ss_pred EEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHH
Q 014666 287 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLS 366 (420)
Q Consensus 287 IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~ 366 (420)
++|..|+.-.++.....-.+...+++|+==+|..-..+.......+-..+.....+..+-...++.+||+-...+.+++.
T Consensus 174 lvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 174 LLLQLPGAGDELQGIKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred EEEecCCchHHHHHHHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 45655554333322111112333578998888664333222333333333221111111236799999999988888877
Q ss_pred HHhhcch
Q 014666 367 SLMECLE 373 (420)
Q Consensus 367 ~~~~~~~ 373 (420)
.+..+..
T Consensus 254 ~I~~~~~ 260 (332)
T PRK09435 254 AIEDHRA 260 (332)
T ss_pred HHHHHHH
Confidence 6666543
No 437
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=84.32 E-value=1.3 Score=47.49 Aligned_cols=23 Identities=9% Similarity=0.326 Sum_probs=21.1
Q ss_pred CcEEEEccCCCCchhHhHHHHHH
Q 014666 179 KSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.++++.||||||||..|++|-+-
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL 162 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLL 162 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHh
Confidence 58999999999999999999865
No 438
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=0.57 Score=45.09 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=27.4
Q ss_pred ceEEEecCcchhhc-cCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 309 IRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 309 l~~lVlDEaD~~l~-~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
=.++-+|=-.-++- .|-+.-++.|+..-- +...|.|+|..-
T Consensus 218 Qe~iqvDT~NILFIcgGAF~GlekiI~~R~---------~~~~iGF~a~~~ 259 (408)
T COG1219 218 QEFIQVDTSNILFICGGAFAGLEKIIKKRL---------GKKGIGFGAEVK 259 (408)
T ss_pred cceEEEcccceeEEeccccccHHHHHHHhc---------cCCccccccccc
Confidence 36777777665543 356677788776532 457889998875
No 439
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=84.28 E-value=11 Score=33.00 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=12.0
Q ss_pred EEEEccCCCCchhH
Q 014666 181 VVLSSGSGSGRTLA 194 (420)
Q Consensus 181 vl~~a~TGsGKTla 194 (420)
+++.+++|||||.-
T Consensus 2 ~li~G~~~sGKS~~ 15 (169)
T cd00544 2 ILVTGGARSGKSRF 15 (169)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999954
No 440
>PRK04328 hypothetical protein; Provisional
Probab=84.11 E-value=4.5 Score=37.88 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=33.1
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
.|.-+++.+++|+|||...+--+.+.+ ..+-.+++++ +.+-..++.+.+..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~----------------------------~~ge~~lyis-~ee~~~~i~~~~~~ 72 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL----------------------------QMGEPGVYVA-LEEHPVQVRRNMRQ 72 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH----------------------------hcCCcEEEEE-eeCCHHHHHHHHHH
Confidence 467799999999999865333333311 0234466665 55566666666666
Q ss_pred hh
Q 014666 257 IS 258 (420)
Q Consensus 257 l~ 258 (420)
++
T Consensus 73 ~g 74 (249)
T PRK04328 73 FG 74 (249)
T ss_pred cC
Confidence 64
No 441
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=84.09 E-value=4.5 Score=41.53 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=52.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.|+|+.-|..++..+... ++.+..++|+.........+ ....+|||||-- +. ..+++.++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv-----~~-rGiDip~v 314 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDI-----AA-RGLDIEEL 314 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccH-----Hh-cCCCcccC
Confidence 457999999999999888877653 67888899988865544333 345789999952 22 45778889
Q ss_pred eEEEe
Q 014666 310 RYVVL 314 (420)
Q Consensus 310 ~~lVl 314 (420)
+++|.
T Consensus 315 ~~VI~ 319 (456)
T PRK10590 315 PHVVN 319 (456)
T ss_pred CEEEE
Confidence 88874
No 442
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=84.03 E-value=3.8 Score=42.08 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=53.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.|+|+.-|..++..+... ++.+..++|+.+.......+ ....+|||||- .+ ..++++.++
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~-~rGiDi~~v 311 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VA-ARGLDIKAL 311 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----cc-ccccchhcC
Confidence 346999999999999998888664 67888999998876554433 34578999994 22 345678888
Q ss_pred eEEEecC
Q 014666 310 RYVVLDE 316 (420)
Q Consensus 310 ~~lVlDE 316 (420)
.++|.-+
T Consensus 312 ~~VI~~d 318 (460)
T PRK11776 312 EAVINYE 318 (460)
T ss_pred CeEEEec
Confidence 8887543
No 443
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=84.00 E-value=6.3 Score=41.16 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=52.9
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCceE
Q 014666 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~ 311 (420)
++||.+.|+..|..+...+... |+++..++|+.......+.+ ....+|+|||--. .+.+++.++.+
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva------aRGiDi~~v~~ 344 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA------ARGLDIPDVSH 344 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh------hccCCccccce
Confidence 6999999999999977666665 68899999999877655544 4568999999754 34666777777
Q ss_pred EE
Q 014666 312 VV 313 (420)
Q Consensus 312 lV 313 (420)
||
T Consensus 345 Vi 346 (513)
T COG0513 345 VI 346 (513)
T ss_pred eE
Confidence 75
No 444
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.81 E-value=15 Score=35.35 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=33.0
Q ss_pred eEEEecCcchhhccC---CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHH
Q 014666 310 RYVVLDEADTLFDRG---FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 310 ~~lVlDEaD~~l~~~---~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
..+.|||+|.|.... -.+..+.|-..+--+.......+--++++.||--+++...
T Consensus 227 SIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 227 SIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred cEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 468899999886543 2333444444333333333334557899999977765554
No 445
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=83.80 E-value=6.4 Score=35.99 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCCchhH
Q 014666 177 NGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla 194 (420)
.|.-+++.+++|+|||..
T Consensus 15 ~g~~~li~G~~G~GKt~~ 32 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTF 32 (224)
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999864
No 446
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=83.78 E-value=1.1 Score=44.21 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++++|||||||...
T Consensus 121 ~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 4668999999999999764
No 447
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.57 E-value=2.2 Score=36.71 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=33.9
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
..-+++++||...-+|......+..++..+.. ..+++++++.-...+.
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~--------~~~tii~~sh~~~~~~ 144 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAE--------EGRTVIIVTHDPELAE 144 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--------CCCEEEEEeCCHHHHH
Confidence 34689999999998888778888888877653 2246666666554443
No 448
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.44 E-value=2.5 Score=41.11 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=37.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHH-HHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIP-AVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~-~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.+..|..-.++..-+ .+.| .+++.|..-+- ++..+++++++++||||||.. +.+++.
T Consensus 108 ~IRk~~~~~~t~~~l---~~~g--t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~ 165 (312)
T COG0630 108 TIRKFSDEPITPEDL---IEYG--TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLD 165 (312)
T ss_pred EEEcCCCCCCCHHHH---hhcC--CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHH
Confidence 344555555544333 3334 56777766555 677899999999999999965 555554
No 449
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=83.44 E-value=5.1 Score=36.14 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=18.8
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.|.=+.+.+++|+|||...+-.+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3566899999999999776544443
No 450
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.41 E-value=1.7 Score=45.01 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=26.0
Q ss_pred HHHCCCCCCcHHHHhhHHHHhc-CC-cEEEEccCCCCchhHhHHHHHH
Q 014666 156 VEKMGLFVPSEIQCVGIPAVLN-GK-SVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~i~~-g~-dvl~~a~TGsGKTla~~lp~l~ 201 (420)
|..+|| ++-|...|..+.. .+ -+++++|||||||... ..++.
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~ 264 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALS 264 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHh
Confidence 445554 4445555555443 33 3789999999999764 33344
No 451
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.27 E-value=4.9 Score=41.44 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=54.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+..+||.|+|+.-|..++..+... ++.+..++|+......... ....++|||||-.. ..++++.++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~------~~GID~p~V 295 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAF------GMGINKPDV 295 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechh------hccCCcccc
Confidence 456799999999999998888764 7788889999887654433 24568999999631 235677888
Q ss_pred eEEEecCc
Q 014666 310 RYVVLDEA 317 (420)
Q Consensus 310 ~~lVlDEa 317 (420)
+++|.-..
T Consensus 296 ~~VI~~~~ 303 (470)
T TIGR00614 296 RFVIHYSL 303 (470)
T ss_pred eEEEEeCC
Confidence 88876543
No 452
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=83.18 E-value=4.8 Score=42.09 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=18.8
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
....+++||||||.|- ......++..|.
T Consensus 115 ~~~~KVvIIDEad~Lt----~~A~NALLK~LE 142 (535)
T PRK08451 115 MARFKIFIIDEVHMLT----KEAFNALLKTLE 142 (535)
T ss_pred cCCeEEEEEECcccCC----HHHHHHHHHHHh
Confidence 4568999999999884 333444455544
No 453
>PF12846 AAA_10: AAA-like domain
Probab=83.01 E-value=1.8 Score=41.11 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=17.1
Q ss_pred CcEEEEccCCCCchhHhHHHH
Q 014666 179 KSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~ 199 (420)
.++++.|+||||||.....-+
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~ 22 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLL 22 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 578999999999997766333
No 454
>PRK09165 replicative DNA helicase; Provisional
Probab=82.84 E-value=5 Score=41.71 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCceEEEecCcchhhccC------CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 307 DDIRYVVLDEADTLFDRG------FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~------~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
..+++||||=.+.|-..+ ...++..|.+.|...... -++.+|++|. |+..+
T Consensus 340 ~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAke---l~ipVi~lsQ-LnR~~ 396 (497)
T PRK09165 340 HGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKE---LNIPVIALSQ-LSRQV 396 (497)
T ss_pred cCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHH---hCCeEEEeec-ccchh
Confidence 358899999999775322 224567776666554321 2566666654 55544
No 455
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.70 E-value=1.1 Score=49.54 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCchhHhH
Q 014666 178 GKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~ 196 (420)
..++++.|++|+|||...-
T Consensus 200 ~~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAE 218 (821)
T ss_pred cCCeEEECCCCCCHHHHHH
Confidence 3689999999999997653
No 456
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.63 E-value=3.5 Score=41.86 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCCchhHhH
Q 014666 178 GKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~ 196 (420)
+..+++++.+|+|||.+..
T Consensus 175 ~gSlYVsG~PGtgkt~~l~ 193 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALLS 193 (529)
T ss_pred CcceEeeCCCCcchHHHHH
Confidence 4689999999999997644
No 457
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=82.61 E-value=7.4 Score=41.37 Aligned_cols=135 Identities=15% Similarity=0.185 Sum_probs=77.3
Q ss_pred cHHHHhhHHHHhcC-------CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 165 SEIQCVGIPAVLNG-------KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 165 t~iQ~~~i~~i~~g-------~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
|--|..++-.+++. --+-+.|.-|-||+.|..+.+...+. -...-+
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa---------------------------~GysnI 307 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVA---------------------------FGYSNI 307 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHh---------------------------cCcceE
Confidence 55677776544332 23677888999999999998876331 122336
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchh-----------------
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE----------------- 300 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~----------------- 300 (420)
.|..|+-+-...++..+-+-...+++.-.+ ..+||-.|-.-+...+.
T Consensus 308 yvtSPspeNlkTlFeFv~kGfDaL~Yqeh~----------------Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P 371 (1011)
T KOG2036|consen 308 YVTSPSPENLKTLFEFVFKGFDALEYQEHV----------------DYDIIQSTNPDFKKAIVRINIFREHRQTIQYISP 371 (1011)
T ss_pred EEcCCChHHHHHHHHHHHcchhhhcchhhc----------------chhhhhhcChhhhhhEEEEEEeccccceeEeecc
Confidence 677899988777766543321111111000 11222222222222211
Q ss_pred cCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 301 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 301 ~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
.....+...++||||||-.+- .+-+..++ .+-.++|+.|++.
T Consensus 372 ~D~~kl~q~eLlVIDEAAAIP----Lplvk~Li-------------gPylVfmaSTinG 413 (1011)
T KOG2036|consen 372 HDHQKLGQAELLVIDEAAAIP----LPLVKKLI-------------GPYLVFMASTING 413 (1011)
T ss_pred chhhhccCCcEEEechhhcCC----HHHHHHhh-------------cceeEEEeecccc
Confidence 123346778999999998773 45555555 3467888888753
No 458
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=82.59 E-value=7 Score=34.90 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=34.8
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec-ccchHHHHHH
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA-IAEMLGEQLS 366 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT-l~~~v~~~~~ 366 (420)
...++|||||.-.++..|+. .++.++..|... +..+.|+++.. .|+++.+.+.
T Consensus 121 ~~ydlviLDEl~~al~~g~l-~~eeV~~~l~~k------P~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 121 GKYDLVILDELNYALRYGLL-PLEEVVALLKAR------PEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred CCCCEEEEehhhHHHHcCCC-CHHHHHHHHhcC------CCCcEEEEECCCCCHHHHHHHH
Confidence 36889999999999988743 234444444432 35566666665 6777776654
No 459
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=82.56 E-value=17 Score=35.32 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=28.3
Q ss_pred cEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 286 GMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 286 ~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
.|-|...-.+.+.+....+ ....+++|||+||.|- ......+++.|.
T Consensus 103 ~I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~----~~aaNaLLK~LE 149 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMN----EAAANALLKTLE 149 (314)
T ss_pred cCcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcC----HHHHHHHHHHHh
Confidence 3434344445555554433 3678999999999984 344455555554
No 460
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=82.46 E-value=1.6 Score=48.48 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhHhH
Q 014666 178 GKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~ 196 (420)
..++++.|++|+|||...-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3689999999999997643
No 461
>PRK06620 hypothetical protein; Validated
Probab=82.40 E-value=13 Score=33.97 Aligned_cols=110 Identities=11% Similarity=0.107 Sum_probs=58.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCC-CceecccCCCCh--HHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCce
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCAR-LDSSMENGGVSS--KALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIR 310 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~-i~~~~~~gg~~~--~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~ 310 (420)
++--.|+.+.-+.|......+..-..... ....+++|..-. ......+...++..+.+...... . .+.+.+
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~----~--~~~~~d 87 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNE----E--ILEKYN 87 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhch----h--HHhcCC
Confidence 44567888877777665554433111111 144677775432 22333333333434433322211 1 124567
Q ss_pred EEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 311 YVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 311 ~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
+|+|||+|.+- ...+-.++..+.. .+.|+|+.|.|.|+.
T Consensus 88 ~lliDdi~~~~----~~~lf~l~N~~~e-------~g~~ilits~~~p~~ 126 (214)
T PRK06620 88 AFIIEDIENWQ----EPALLHIFNIINE-------KQKYLLLTSSDKSRN 126 (214)
T ss_pred EEEEeccccch----HHHHHHHHHHHHh-------cCCEEEEEcCCCccc
Confidence 89999999552 2355666666653 345776666667765
No 462
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.39 E-value=0.79 Score=43.66 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=18.9
Q ss_pred HHhcCCcEEEEccCCCCchhHh
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~ 195 (420)
.+..++.++++||+|+|||...
T Consensus 29 l~~~~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 29 LLSNGRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHCTEEEEEESSTTSSHHHHH
T ss_pred HHHcCCcEEEECCCCCchhHHH
Confidence 4568899999999999999753
No 463
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=82.33 E-value=2.2 Score=41.44 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=18.8
Q ss_pred HHhcCCcEEEEccCCCCchhHh
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~ 195 (420)
.+..|.+++++++||||||...
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHH
Confidence 4567899999999999999753
No 464
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.02 E-value=6.8 Score=38.59 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=36.4
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhH----HHHhcCCcEEEEccCCCCchhHh
Q 014666 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGI----PAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i----~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
....+|.++|=-+.+...|.+.-. .|.|.--+ ..+..-+.+++-+|.|+|||+..
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~Vi---lPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVI---LPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHh---hcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 345689999988888888877522 22222111 12234578999999999999763
No 465
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=81.98 E-value=9.7 Score=34.69 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=18.5
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.|.=+.+.+++|+|||...+.-+..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH
Confidence 3567899999999999765544433
No 466
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=81.92 E-value=4.5 Score=45.01 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred EEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhcc
Q 014666 181 VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC 260 (420)
Q Consensus 181 vl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~ 260 (420)
++++||||+|||...-.-.-..+ .+...++....-+....
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~-----------------------------~~~~~~~~~dmse~~~~----------- 638 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLY-----------------------------GGEQNLITINMSEFQEA----------- 638 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh-----------------------------CCCcceEEEeHHHhhhh-----------
Q ss_pred CCCceecccCCCChHHHHHHhcCCCcEEEeCh---------hHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHH
Q 014666 261 ARLDSSMENGGVSSKALEDVSNAPIGMLIATP---------SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISK 331 (420)
Q Consensus 261 ~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP---------~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~ 331 (420)
....-++|.| |.|...+++ ....+|+|||++.+ +......+..
T Consensus 639 ----------------------~~~~~l~g~~~gyvg~~~~g~L~~~v~~-----~p~svvllDEieka-~~~v~~~Llq 690 (852)
T TIGR03345 639 ----------------------HTVSRLKGSPPGYVGYGEGGVLTEAVRR-----KPYSVVLLDEVEKA-HPDVLELFYQ 690 (852)
T ss_pred ----------------------hhhccccCCCCCcccccccchHHHHHHh-----CCCcEEEEechhhc-CHHHHHHHHH
Q ss_pred HHH--HchhhhcccCCCCceEEEEeecccchHHH
Q 014666 332 ILN--PLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 332 Il~--~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
++. .+.+.....-.-..-+++|++.++.....
T Consensus 691 ~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~ 724 (852)
T TIGR03345 691 VFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIM 724 (852)
T ss_pred HhhcceeecCCCcEEeccccEEEEeCCCchHHHH
No 467
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=81.84 E-value=6 Score=40.80 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=53.1
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.|++++-|..++..+... ++.+..++|+.........+ .....|||||. .+ ..++++.++
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l-~~GIDi~~v 404 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VA-GRGIHIDGI 404 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----cc-ccCCcccCC
Confidence 358999999999999888777543 67788888888776554333 34578999994 22 346778899
Q ss_pred eEEEec
Q 014666 310 RYVVLD 315 (420)
Q Consensus 310 ~~lVlD 315 (420)
+++|.-
T Consensus 405 ~~VI~~ 410 (475)
T PRK01297 405 SHVINF 410 (475)
T ss_pred CEEEEe
Confidence 988864
No 468
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=81.71 E-value=10 Score=37.18 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
+.+++.||.|+|||...
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45799999999999653
No 469
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=81.61 E-value=1.5 Score=41.47 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.1
Q ss_pred hhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 170 VGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 170 ~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
.++..+..|+++++.+++|+|||...
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 34455678999999999999999764
No 470
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=81.60 E-value=3.4 Score=35.07 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=24.1
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHc
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPL 336 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l 336 (420)
+.+-+++++||.-.-+|......+..++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 3456799999999888887777777777654
No 471
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.54 E-value=7.1 Score=38.73 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=18.9
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
+...++|||||+|.|.. ..+..++..+.
T Consensus 106 ~~~~kiviIDE~~~l~~----~~~~~ll~~le 133 (367)
T PRK14970 106 TGKYKIYIIDEVHMLSS----AAFNAFLKTLE 133 (367)
T ss_pred cCCcEEEEEeChhhcCH----HHHHHHHHHHh
Confidence 45678999999997743 33455555553
No 472
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=81.53 E-value=7 Score=36.84 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=17.7
Q ss_pred cCCcEEEEccCCCCchhHhHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l 200 (420)
.|.-+++.+++|+|||...+--+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999975443333
No 473
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=81.52 E-value=5.1 Score=41.88 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=53.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
.+++||.++|+.-|..+...+.. ..++++..++|+.........+ .....|||||.- -..++++.++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~---~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdv------l~rGiDip~v 437 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITV---VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGV------LGRGVDLLRV 437 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhh---ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecH------hhccCCcccC
Confidence 46799999999998887766654 3467888899998876544433 345799999973 2346778999
Q ss_pred eEEEe
Q 014666 310 RYVVL 314 (420)
Q Consensus 310 ~~lVl 314 (420)
++||.
T Consensus 438 ~~VI~ 442 (518)
T PLN00206 438 RQVII 442 (518)
T ss_pred CEEEE
Confidence 99886
No 474
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=81.48 E-value=0.82 Score=45.28 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCchhHhH
Q 014666 179 KSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~ 196 (420)
+-+++.+|.|+|||+..-
T Consensus 149 lgllL~GPPGcGKTllAr 166 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCE 166 (413)
T ss_pred eEEEeeCCCCCCHHHHHH
Confidence 458899999999997643
No 475
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=81.36 E-value=20 Score=38.69 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=56.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.|+|+.-|..+...+... ++.+..++|+......... ......|+|||- .+. .++++..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~-----~L~-rGfdlp~ 514 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN-----LLR-EGLDIPE 514 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC-----HHh-CCccccC
Confidence 4678999999999999988877654 6788888887765433222 234578999983 233 4667899
Q ss_pred ceEEEecCcchh
Q 014666 309 IRYVVLDEADTL 320 (420)
Q Consensus 309 l~~lVlDEaD~~ 320 (420)
++++|+=|++..
T Consensus 515 v~lVii~d~eif 526 (652)
T PRK05298 515 VSLVAILDADKE 526 (652)
T ss_pred CcEEEEeCCccc
Confidence 999988777744
No 476
>PRK10263 DNA translocase FtsK; Provisional
Probab=81.29 E-value=6.5 Score=45.00 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=17.5
Q ss_pred cEEEEccCCCCchhHhHHHHHH
Q 014666 180 SVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~l~ 201 (420)
++||.|.||||||.+.---++.
T Consensus 1012 HLLIAGaTGSGKSv~LntLIlS 1033 (1355)
T PRK10263 1012 HLLVAGTTGSGKSVGVNAMILS 1033 (1355)
T ss_pred cEEEecCCCCCHHHHHHHHHHH
Confidence 6899999999999875544544
No 477
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=81.22 E-value=2.9 Score=44.93 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=91.5
Q ss_pred CCcHHHHhhHHHHhcCCc----------EEEEccCC--CCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCC
Q 014666 163 VPSEIQCVGIPAVLNGKS----------VVLSSGSG--SGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPM 230 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~d----------vl~~a~TG--sGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 230 (420)
.++..|.+++-+..+.++ .|+--..| -|+|.|-+| ++.+++
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiI--feNyLk------------------------- 316 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGII--FENYLK------------------------- 316 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEE--ehhhhc-------------------------
Confidence 577889999877665443 34443444 445655332 332222
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceeccc----CCCChHHHHHHhcCCCcEEEeChhHHHhc--------
Q 014666 231 KPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMEN----GGVSSKALEDVSNAPIGMLIATPSEVLQH-------- 298 (420)
Q Consensus 231 ~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~----gg~~~~~~~~~l~~~~~IlV~TP~~L~~~-------- 298 (420)
.+.+||.+.-+-.|-....+.++.++.. +|.|..+. +..+..+. ... .-.|+++|...|.--
T Consensus 317 --GRKrAlW~SVSsDLKfDAERDL~DigA~-~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~ky 390 (1300)
T KOG1513|consen 317 --GRKRALWFSVSSDLKFDAERDLRDIGAT-GIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKY 390 (1300)
T ss_pred --ccceeEEEEeccccccchhhchhhcCCC-Cccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchH
Confidence 3457999988888887777888877654 45554432 11111111 011 125888887655322
Q ss_pred -------hhcCcccCCCceEEEecCcchhhc---c------CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 299 -------IEDRNVSCDDIRYVVLDEADTLFD---R------GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 299 -------l~~~~~~l~~l~~lVlDEaD~~l~---~------~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
++.-.-++ =.++||||+|.--+ + ..+..+..+-..|| +.++|.-|||=..+-+
T Consensus 391 rtR~rQllqW~Ge~f--eGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP---------~ARVVYASATGAsEPr 459 (1300)
T KOG1513|consen 391 RTRFRQLLQWCGEDF--EGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP---------NARVVYASATGASEPR 459 (1300)
T ss_pred HHHHHHHHHHhhhcc--ceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC---------CceEEEeeccCCCCcc
Confidence 22111112 25799999997532 1 14556667777776 6789999999766555
Q ss_pred HH
Q 014666 363 EQ 364 (420)
Q Consensus 363 ~~ 364 (420)
++
T Consensus 460 NM 461 (1300)
T KOG1513|consen 460 NM 461 (1300)
T ss_pred hh
Confidence 55
No 478
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=81.05 E-value=17 Score=35.52 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=19.7
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKD 338 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~ 338 (420)
...-+++||||||.|- ......++..|..
T Consensus 108 ~~~~kvviI~~a~~~~----~~a~NaLLK~LEE 136 (329)
T PRK08058 108 ESNKKVYIIEHADKMT----ASAANSLLKFLEE 136 (329)
T ss_pred ccCceEEEeehHhhhC----HHHHHHHHHHhcC
Confidence 4567999999999884 3344455555543
No 479
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=80.99 E-value=1.3 Score=48.31 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
.+++.||||+|||...
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 4799999999999553
No 480
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=80.69 E-value=1.2 Score=32.12 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|...++.+++|||||..+
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4557999999999999764
No 481
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=80.62 E-value=5.8 Score=42.54 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=51.9
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCce
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIR 310 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~ 310 (420)
.++||.|+|+.-|.+++..+... ++.+..++|+.+.......+ ....+|||||- .+. ..+++.++.
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----v~a-rGIDip~V~ 315 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIATD-----VAA-RGLDVERIS 315 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----hHh-cCCCcccCC
Confidence 46999999999999988877654 67888899988776544433 34589999994 222 346678888
Q ss_pred EEEe
Q 014666 311 YVVL 314 (420)
Q Consensus 311 ~lVl 314 (420)
+||.
T Consensus 316 ~VI~ 319 (629)
T PRK11634 316 LVVN 319 (629)
T ss_pred EEEE
Confidence 8774
No 482
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=80.61 E-value=9 Score=43.22 Aligned_cols=93 Identities=13% Similarity=0.213 Sum_probs=73.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
++.++.+|.|-.+-..++...++.+-- ..++++.+|.+...+.... +....||||||. |-+.++++.+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGIDIPn 873 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGIDIPN 873 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCcCCCC
Confidence 678999999999999999999988865 5668889999987765543 356799999996 2345678999
Q ss_pred ceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 309 IRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 309 l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
...+||+-||+|. ..++.++-.+..
T Consensus 874 ANTiIIe~AD~fG----LsQLyQLRGRVG 898 (1139)
T COG1197 874 ANTIIIERADKFG----LAQLYQLRGRVG 898 (1139)
T ss_pred CceEEEecccccc----HHHHHHhccccC
Confidence 9999999999874 556666665554
No 483
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=80.34 E-value=12 Score=30.17 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=52.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH---h-cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV---S-NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~---l-~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.++++.-+.++...+.. .+..+..+.|+......... + .....|+|+|.- + ..++++..+
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~-~-----~~G~d~~~~ 97 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV-I-----ARGIDLPNV 97 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh-h-----hcCcChhhC
Confidence 45799999999999998888876 35677788888765433222 2 234679999863 2 235567778
Q ss_pred eEEEecCcc
Q 014666 310 RYVVLDEAD 318 (420)
Q Consensus 310 ~~lVlDEaD 318 (420)
.++|+...+
T Consensus 98 ~~vi~~~~~ 106 (131)
T cd00079 98 SVVINYDLP 106 (131)
T ss_pred CEEEEeCCC
Confidence 888877664
No 484
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=80.23 E-value=4.2 Score=43.44 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=31.8
Q ss_pred ccCCCChHHHHHHhcCCCcEEEe-ChhHHHhchhcCcccCCCceEEEecCcchhhccC
Q 014666 268 ENGGVSSKALEDVSNAPIGMLIA-TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG 324 (420)
Q Consensus 268 ~~gg~~~~~~~~~l~~~~~IlV~-TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~ 324 (420)
-+||...... ++....-.|| -||++.+.|+.-.. . =-++.|||+|.+. .|
T Consensus 470 SvGG~tDvAe---IkGHRRTYVGAMPGkiIq~LK~v~t--~-NPliLiDEvDKlG-~g 520 (906)
T KOG2004|consen 470 SVGGMTDVAE---IKGHRRTYVGAMPGKIIQCLKKVKT--E-NPLILIDEVDKLG-SG 520 (906)
T ss_pred eccccccHHh---hcccceeeeccCChHHHHHHHhhCC--C-CceEEeehhhhhC-CC
Confidence 3466655433 3333444554 89999999986322 1 2368899999997 44
No 485
>PRK08760 replicative DNA helicase; Provisional
Probab=80.21 E-value=21 Score=36.93 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=30.2
Q ss_pred CCceEEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 307 DDIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
..+++||||=.+.|-..+ ...++..|.+.|...... -++.+|++| -++..
T Consensus 338 ~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAke---l~ipVi~ls-QLnR~ 391 (476)
T PRK08760 338 HDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKE---LNVPVIALS-QLNRS 391 (476)
T ss_pred cCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHH---hCCEEEEee-ccCcc
Confidence 358899999998774222 334566776666554421 256667766 44443
No 486
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=80.04 E-value=1.6 Score=44.11 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=21.1
Q ss_pred HHHHhcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 172 IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 172 i~~i~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
+|.-...+++++.|+||||||.. +..++.
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~ 64 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLA 64 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHH
Confidence 44445568999999999999975 334444
No 487
>PRK10865 protein disaggregation chaperone; Provisional
Probab=79.87 E-value=1.8 Score=48.05 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
..++|+.|++|+|||...
T Consensus 199 ~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 358999999999999764
No 488
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=79.83 E-value=9.6 Score=39.51 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=35.9
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 257 (420)
|.-+++.+++|+|||+..+--+.+. + ..+-++++++ +-|-..|+...+..+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~------------------~----------~~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENA------------------C----------ANKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH------------------H----------HCCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 4679999999999997543333331 1 1345677765 788888888888776
Q ss_pred h
Q 014666 258 S 258 (420)
Q Consensus 258 ~ 258 (420)
+
T Consensus 314 g 314 (484)
T TIGR02655 314 G 314 (484)
T ss_pred C
Confidence 4
No 489
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=79.81 E-value=2 Score=31.17 Aligned_cols=42 Identities=48% Similarity=0.674 Sum_probs=38.8
Q ss_pred hccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhhh
Q 014666 374 RDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHL 415 (420)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~ 415 (420)
.-.++.|+.+.+.+++.+++..+++.+.+..|+.+++++|..
T Consensus 22 p~~A~KITGMLLEmd~~ell~lle~~~~L~~kv~EA~~vl~~ 63 (64)
T smart00517 22 PELAGKITGMLLEMDNSELLHLLESPELLRSKVDEALEVLKS 63 (64)
T ss_pred cccCCcCeeeeeCCCHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999999864
No 490
>PTZ00424 helicase 45; Provisional
Probab=79.78 E-value=7.8 Score=38.76 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=52.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.|+|+.-|..+...+... ++.+..++|+.........+ ....+|||||. .+ ..++++.++
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l-~~GiDip~v 336 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LL-ARGIDVQQV 336 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----cc-cCCcCcccC
Confidence 457999999999988877766543 67888899998776544432 24589999994 22 345778889
Q ss_pred eEEEec
Q 014666 310 RYVVLD 315 (420)
Q Consensus 310 ~~lVlD 315 (420)
+++|.-
T Consensus 337 ~~VI~~ 342 (401)
T PTZ00424 337 SLVINY 342 (401)
T ss_pred CEEEEE
Confidence 988853
No 491
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=79.69 E-value=6.7 Score=40.61 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=56.9
Q ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhc----CCCcEEEeChhHHHhchhcCcccCC
Q 014666 232 PMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN----APIGMLIATPSEVLQHIEDRNVSCD 307 (420)
Q Consensus 232 ~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~L~~~l~~~~~~l~ 307 (420)
....++||.|-|+.-|.++...++.. ++.+.+++|+.+..+....|+ ..+.|||||--. .+.+++.
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA------aRGLDi~ 408 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA------ARGLDVP 408 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcccc------cccCCCc
Confidence 45679999999999999988877764 467889999988776665553 357899999732 3567888
Q ss_pred CceEEEe
Q 014666 308 DIRYVVL 314 (420)
Q Consensus 308 ~l~~lVl 314 (420)
+|++||-
T Consensus 409 dV~lVIn 415 (519)
T KOG0331|consen 409 DVDLVIN 415 (519)
T ss_pred cccEEEe
Confidence 8888874
No 492
>PHA00012 I assembly protein
Probab=79.64 E-value=15 Score=35.82 Aligned_cols=58 Identities=17% Similarity=0.335 Sum_probs=33.0
Q ss_pred cCCCceEEEecCcchhhcc-CCH----HHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 305 SCDDIRYVVLDEADTLFDR-GFG----PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 305 ~l~~l~~lVlDEaD~~l~~-~~~----~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
+...-.++||||||..+.. ++. ..+...+...++ .+.=+++++-.+ ..+...++..+.
T Consensus 78 dep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh-------~G~DvilITQ~p-s~VDs~IR~ll~ 140 (361)
T PHA00012 78 DESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARK-------LGWDIIFIIQDI-SIMDKQAREALA 140 (361)
T ss_pred CCCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhcc-------CCceEEEEcCCH-HHHhHHHHHhhh
Confidence 3456679999999998853 222 334444444332 244455555444 456666654443
No 493
>PRK13695 putative NTPase; Provisional
Probab=79.64 E-value=13 Score=32.40 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.0
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
.+++.+++|+|||.....
T Consensus 2 ~i~ltG~~G~GKTTll~~ 19 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK 19 (174)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999986553
No 494
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=79.54 E-value=2.6 Score=43.75 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.4
Q ss_pred cEEEEccCCCCchhHhHH
Q 014666 180 SVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~l 197 (420)
=.+++++-|+|||.+.-+
T Consensus 40 AYlfsG~RGvGKTt~Ari 57 (515)
T COG2812 40 AYLFSGPRGVGKTTIARI 57 (515)
T ss_pred hhhhcCCCCcCchhHHHH
Confidence 368899999999986544
No 495
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=79.29 E-value=2.8 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhHhHHHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
..++++.|+||+|||..+++|-+-
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL 247 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTAL 247 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhh
Confidence 358999999999999999999764
No 496
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=79.09 E-value=8.6 Score=38.17 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=30.2
Q ss_pred CCceEEEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 307 DDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
...-+||+|-||.+-|++ ....+-.+-..++. +.=.|+||+++.+.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--------~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNE--------PTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--------CceEEEEeccccHH
Confidence 446789999999998876 33333344333332 44577888888763
No 497
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=79.06 E-value=2.1 Score=43.04 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=19.7
Q ss_pred HHhcCCcEEEEccCCCCchhHhHHHHHHHh
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQVY 203 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~~lp~l~~i 203 (420)
.-...+++++.|.||||||.+ +.+++..+
T Consensus 11 ~~~e~~~~li~G~~GsGKT~~-i~~ll~~~ 39 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQA-IRHLLDQI 39 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHHH-HHHHHHHH
T ss_pred cchhhCcEEEECCCCCCHHHH-HHHHHHHH
Confidence 344568999999999999974 45666543
No 498
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=79.03 E-value=2 Score=45.99 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=21.2
Q ss_pred CcEEEEccCCCCchhHhHHHHHH
Q 014666 179 KSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.++++.|+||||||..+++|.|-
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL 198 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLL 198 (636)
T ss_pred ceEEEEecCCCCCceEEEccchh
Confidence 57999999999999999999875
No 499
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=78.81 E-value=4.5 Score=43.18 Aligned_cols=64 Identities=25% Similarity=0.297 Sum_probs=37.9
Q ss_pred cccCCCChHHHHHHhcCCCcEEEe-ChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHc
Q 014666 267 MENGGVSSKALEDVSNAPIGMLIA-TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336 (420)
Q Consensus 267 ~~~gg~~~~~~~~~l~~~~~IlV~-TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l 336 (420)
+-.||.......+ ..-.-.|| -||++.+-|...... =-+++|||+|.|-....++--..+|+-|
T Consensus 381 ~sLGGvrDEAEIR---GHRRTYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 381 ISLGGVRDEAEIR---GHRRTYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred EecCccccHHHhc---cccccccccCChHHHHHHHHhCCc---CCeEEeechhhccCCCCCChHHHHHhhc
Confidence 4457766554433 22233444 799999999764321 1478999999997554444444444433
No 500
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=78.79 E-value=1.8 Score=39.10 Aligned_cols=34 Identities=38% Similarity=0.492 Sum_probs=27.9
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhh
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDS 339 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~ 339 (420)
.++-+|+.+||-=.=||+.+.-++..+++.+-..
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e 184 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE 184 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHH
Confidence 4678999999988788888888888888877653
Done!