Query 014666
Match_columns 420
No_of_seqs 318 out of 2427
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 15:41:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 2.3E-41 7.9E-46 315.9 21.6 218 135-380 23-240 (242)
2 3fmo_B ATP-dependent RNA helic 100.0 1.8E-40 6E-45 319.9 18.9 206 137-378 88-298 (300)
3 2db3_A ATP-dependent RNA helic 100.0 1.1E-39 3.9E-44 330.0 24.7 231 136-392 51-281 (434)
4 3iuy_A Probable ATP-dependent 100.0 5.3E-40 1.8E-44 303.7 19.6 216 134-377 12-228 (228)
5 3ber_A Probable ATP-dependent 100.0 1.6E-39 5.4E-44 305.0 21.5 209 137-378 39-248 (249)
6 1wrb_A DJVLGB; RNA helicase, D 100.0 5.3E-40 1.8E-44 308.6 17.4 231 139-389 21-251 (253)
7 3bor_A Human initiation factor 100.0 3.1E-39 1.1E-43 300.6 19.3 210 136-378 25-235 (237)
8 1q0u_A Bstdead; DEAD protein, 100.0 3.2E-39 1.1E-43 296.7 18.5 206 140-378 3-212 (219)
9 1vec_A ATP-dependent RNA helic 100.0 2.2E-38 7.5E-43 287.8 23.4 202 141-375 3-205 (206)
10 2pl3_A Probable ATP-dependent 100.0 1.2E-38 4.2E-43 296.0 22.2 214 135-378 19-233 (236)
11 2oxc_A Probable ATP-dependent 100.0 8.8E-39 3E-43 296.2 21.0 208 136-377 19-228 (230)
12 1qde_A EIF4A, translation init 100.0 3.5E-38 1.2E-42 290.4 21.3 208 138-379 11-218 (224)
13 2gxq_A Heat resistant RNA depe 100.0 6.4E-38 2.2E-42 284.8 20.4 205 142-378 2-206 (207)
14 3ly5_A ATP-dependent RNA helic 100.0 5.3E-38 1.8E-42 296.9 19.5 204 140-372 51-257 (262)
15 3dkp_A Probable ATP-dependent 100.0 6E-38 2E-42 293.1 18.1 214 136-380 20-243 (245)
16 1t6n_A Probable ATP-dependent 100.0 4.8E-37 1.6E-41 282.1 19.6 204 140-376 13-219 (220)
17 2i4i_A ATP-dependent RNA helic 100.0 1.4E-35 4.7E-40 297.3 25.3 244 136-390 10-253 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 4.8E-35 1.7E-39 293.0 21.8 207 139-378 35-241 (410)
19 3eiq_A Eukaryotic initiation f 100.0 2.2E-33 7.4E-38 280.9 23.8 210 137-379 36-246 (414)
20 3sqw_A ATP-dependent RNA helic 100.0 6.4E-33 2.2E-37 290.5 20.4 212 142-375 18-241 (579)
21 3fmp_B ATP-dependent RNA helic 100.0 4.6E-33 1.6E-37 284.9 18.9 219 138-392 89-312 (479)
22 1xti_A Probable ATP-dependent 100.0 1.8E-32 6.3E-37 272.1 22.2 207 140-379 7-216 (391)
23 3fht_A ATP-dependent RNA helic 100.0 2.3E-32 7.8E-37 273.1 22.7 211 136-382 20-235 (412)
24 1fuu_A Yeast initiation factor 100.0 7.2E-33 2.4E-37 275.1 18.8 205 139-377 19-223 (394)
25 1s2m_A Putative ATP-dependent 100.0 4.5E-32 1.5E-36 270.4 23.4 204 139-375 19-222 (400)
26 3i5x_A ATP-dependent RNA helic 100.0 2.4E-32 8.1E-37 285.0 20.5 206 148-375 79-292 (563)
27 3pey_A ATP-dependent RNA helic 100.0 8.8E-32 3E-36 266.9 22.4 202 139-377 3-207 (395)
28 1hv8_A Putative ATP-dependent 100.0 4.7E-31 1.6E-35 259.1 20.6 202 140-376 5-207 (367)
29 2z0m_A 337AA long hypothetical 100.0 1.3E-30 4.4E-35 253.2 20.7 188 148-375 1-188 (337)
30 3l9o_A ATP-dependent RNA helic 100.0 8.9E-30 3E-34 282.3 13.1 189 140-375 161-351 (1108)
31 3fho_A ATP-dependent RNA helic 100.0 8.3E-29 2.8E-33 255.3 18.0 216 138-390 116-334 (508)
32 3oiy_A Reverse gyrase helicase 100.0 3.1E-28 1.1E-32 244.3 15.8 180 151-362 9-209 (414)
33 2v1x_A ATP-dependent DNA helic 100.0 1.9E-27 6.4E-32 248.6 20.9 188 142-373 22-226 (591)
34 2va8_A SSO2462, SKI2-type heli 99.9 3.9E-27 1.3E-31 252.5 19.7 188 141-370 8-196 (715)
35 2zj8_A DNA helicase, putative 99.9 2E-27 6.7E-32 254.9 16.5 188 142-370 2-190 (720)
36 4ddu_A Reverse gyrase; topoiso 99.9 5.2E-27 1.8E-31 260.1 18.8 174 158-363 74-267 (1104)
37 1tf5_A Preprotein translocase 99.9 5.3E-27 1.8E-31 247.5 16.0 170 158-360 79-289 (844)
38 2p6r_A Afuhel308 helicase; pro 99.9 1.4E-27 4.8E-32 255.3 11.6 190 142-370 2-193 (702)
39 1gku_B Reverse gyrase, TOP-RG; 99.9 1.1E-26 3.9E-31 257.2 16.3 186 156-379 51-246 (1054)
40 1oyw_A RECQ helicase, ATP-depe 99.9 1.3E-26 4.5E-31 239.4 15.6 189 140-369 1-196 (523)
41 4a2p_A RIG-I, retinoic acid in 99.9 7.8E-26 2.7E-30 234.5 17.2 174 160-359 4-178 (556)
42 2fsf_A Preprotein translocase 99.9 4.9E-26 1.7E-30 239.7 13.7 147 159-338 71-240 (853)
43 3tbk_A RIG-I helicase domain; 99.9 1.7E-25 5.9E-30 231.5 16.6 172 163-359 4-176 (555)
44 2ykg_A Probable ATP-dependent 99.9 2.9E-25 9.7E-30 237.1 17.3 180 153-358 3-184 (696)
45 1nkt_A Preprotein translocase 99.9 5.3E-25 1.8E-29 232.2 16.7 172 158-362 107-319 (922)
46 4a2q_A RIG-I, retinoic acid in 99.9 6.4E-25 2.2E-29 237.8 17.7 175 158-358 243-418 (797)
47 3b6e_A Interferon-induced heli 99.9 2.8E-25 9.5E-30 202.2 12.4 175 159-356 29-216 (216)
48 3llm_A ATP-dependent RNA helic 99.9 2.5E-25 8.7E-30 206.4 10.7 183 148-372 46-231 (235)
49 2xgj_A ATP-dependent RNA helic 99.9 2.6E-24 8.8E-29 236.7 16.8 157 156-360 80-236 (1010)
50 4f92_B U5 small nuclear ribonu 99.9 1E-23 3.5E-28 241.7 20.0 192 148-371 911-1106(1724)
51 4f92_B U5 small nuclear ribonu 99.9 1E-23 3.4E-28 241.8 19.7 187 160-369 76-265 (1724)
52 4a2w_A RIG-I, retinoic acid in 99.9 6.4E-24 2.2E-28 233.1 15.6 175 158-358 243-418 (936)
53 4a4z_A Antiviral helicase SKI2 99.9 8.3E-24 2.8E-28 232.6 14.9 165 158-369 35-199 (997)
54 4gl2_A Interferon-induced heli 99.9 6.9E-23 2.3E-27 218.8 10.5 174 163-359 7-193 (699)
55 1gm5_A RECG; helicase, replica 99.9 4.2E-22 1.4E-26 213.1 15.8 167 150-363 356-532 (780)
56 1rif_A DAR protein, DNA helica 99.9 2.6E-22 8.8E-27 191.1 12.1 155 163-362 113-267 (282)
57 1wp9_A ATP-dependent RNA helic 99.9 2E-21 7E-26 196.6 17.6 163 163-362 9-171 (494)
58 2whx_A Serine protease/ntpase/ 99.9 1.8E-23 6.3E-28 219.3 0.1 175 143-365 151-326 (618)
59 2ipc_A Preprotein translocase 99.9 1.1E-21 3.7E-26 206.5 12.4 130 159-321 76-215 (997)
60 2jlq_A Serine protease subunit 99.9 4.9E-22 1.7E-26 201.6 9.0 157 160-364 1-158 (451)
61 2oca_A DAR protein, ATP-depend 99.9 2.1E-21 7.3E-26 199.8 12.6 157 162-363 112-268 (510)
62 2eyq_A TRCF, transcription-rep 99.8 3.1E-20 1.1E-24 207.1 22.3 185 146-377 586-781 (1151)
63 3o8b_A HCV NS3 protease/helica 99.8 9.5E-22 3.2E-26 205.5 7.1 148 163-361 217-364 (666)
64 2fwr_A DNA repair protein RAD2 99.8 5.4E-20 1.9E-24 187.4 13.5 137 163-359 93-230 (472)
65 2wv9_A Flavivirin protease NS2 99.8 1.2E-21 3.9E-26 207.1 0.1 155 155-364 202-380 (673)
66 2xau_A PRE-mRNA-splicing facto 99.8 1.2E-19 4.2E-24 194.8 15.7 190 139-372 70-262 (773)
67 2fz4_A DNA repair protein RAD2 99.8 3.2E-19 1.1E-23 165.5 15.1 138 162-359 92-230 (237)
68 1yks_A Genome polyprotein [con 99.8 3.2E-20 1.1E-24 187.7 5.1 136 174-365 4-148 (440)
69 2z83_A Helicase/nucleoside tri 99.7 3E-18 1E-22 174.2 10.3 141 172-364 15-160 (459)
70 2v6i_A RNA helicase; membrane, 99.7 5.6E-18 1.9E-22 170.8 11.8 141 177-364 1-141 (431)
71 3h1t_A Type I site-specific re 99.7 4.6E-18 1.6E-22 178.1 10.9 168 163-371 178-355 (590)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 2.7E-17 9.1E-22 180.5 13.7 168 148-359 249-440 (1038)
73 3crv_A XPD/RAD3 related DNA he 99.7 3.3E-17 1.1E-21 170.2 12.5 131 160-322 1-187 (551)
74 3rc3_A ATP-dependent RNA helic 99.7 5.1E-17 1.7E-21 171.3 9.9 164 143-368 125-291 (677)
75 2vl7_A XPD; helicase, unknown 99.6 8.5E-16 2.9E-20 159.1 8.4 128 159-322 4-189 (540)
76 1z63_A Helicase of the SNF2/RA 99.5 8.4E-14 2.9E-18 142.6 13.0 148 163-358 37-188 (500)
77 3dmq_A RNA polymerase-associat 99.4 8.7E-13 3E-17 145.1 9.8 160 162-358 152-317 (968)
78 4a15_A XPD helicase, ATP-depen 99.3 2.9E-12 9.8E-17 134.5 11.4 81 163-270 3-87 (620)
79 3mwy_W Chromo domain-containin 99.3 1E-11 3.4E-16 134.4 13.7 154 163-357 236-405 (800)
80 1z3i_X Similar to RAD54-like; 99.3 4E-11 1.4E-15 126.6 16.4 160 163-358 55-231 (644)
81 3jux_A Protein translocase sub 99.1 2.2E-10 7.5E-15 119.2 12.7 130 159-321 72-258 (822)
82 1w36_D RECD, exodeoxyribonucle 99.1 3.3E-10 1.1E-14 118.7 10.4 145 165-356 151-298 (608)
83 3upu_A ATP-dependent DNA helic 98.0 4.3E-05 1.5E-09 77.0 12.4 72 156-254 18-94 (459)
84 3e1s_A Exodeoxyribonuclease V, 98.0 3.6E-05 1.2E-09 79.7 11.6 63 163-253 189-251 (574)
85 2gk6_A Regulator of nonsense t 97.8 0.00011 3.6E-09 77.1 12.8 70 161-257 178-247 (624)
86 4b3f_X DNA-binding protein smu 97.8 6.2E-05 2.1E-09 79.2 10.6 67 163-257 189-256 (646)
87 2xzl_A ATP-dependent helicase 97.6 0.00021 7.3E-09 76.8 11.6 70 161-257 358-427 (802)
88 2wjy_A Regulator of nonsense t 97.6 0.00031 1.1E-08 75.4 12.1 70 161-257 354-423 (800)
89 1c4o_A DNA nucleotide excision 97.3 0.00025 8.5E-09 74.8 6.4 68 160-259 6-78 (664)
90 2o0j_A Terminase, DNA packagin 97.3 0.00066 2.3E-08 66.5 8.6 72 163-260 163-234 (385)
91 3cpe_A Terminase, DNA packagin 97.0 0.0037 1.3E-07 64.9 11.3 73 163-261 163-235 (592)
92 3ec2_A DNA replication protein 96.8 0.0014 4.8E-08 56.7 5.8 19 177-195 37-55 (180)
93 2kjq_A DNAA-related protein; s 96.7 0.0023 7.9E-08 53.9 6.2 19 177-195 35-53 (149)
94 2d7d_A Uvrabc system protein B 96.5 0.00085 2.9E-08 70.7 2.6 83 267-361 302-400 (661)
95 2orw_A Thymidine kinase; TMTK, 96.1 0.062 2.1E-06 46.7 12.0 21 177-197 2-22 (184)
96 3vkw_A Replicase large subunit 96.0 0.019 6.4E-07 57.0 8.6 88 180-325 163-250 (446)
97 1c4o_A DNA nucleotide excision 95.9 0.0032 1.1E-07 66.3 3.1 83 267-361 296-394 (664)
98 2zpa_A Uncharacterized protein 95.8 0.02 6.9E-07 59.7 8.5 113 163-358 175-289 (671)
99 1xx6_A Thymidine kinase; NESG, 95.6 0.024 8.3E-07 49.7 7.1 23 177-199 7-29 (191)
100 2d7d_A Uvrabc system protein B 95.5 0.019 6.5E-07 60.3 7.2 66 163-259 12-82 (661)
101 3kl4_A SRP54, signal recogniti 95.4 0.065 2.2E-06 53.1 9.9 56 307-370 178-236 (433)
102 3h4m_A Proteasome-activating n 95.3 0.062 2.1E-06 49.7 9.3 53 140-195 13-68 (285)
103 3lfu_A DNA helicase II; SF1 he 95.3 0.028 9.5E-07 58.7 7.6 71 162-258 8-78 (647)
104 2b8t_A Thymidine kinase; deoxy 95.2 0.051 1.8E-06 48.9 8.0 33 287-320 69-101 (223)
105 1d2n_A N-ethylmaleimide-sensit 95.1 0.21 7.3E-06 45.8 12.3 17 179-195 65-81 (272)
106 1l8q_A Chromosomal replication 95.1 0.035 1.2E-06 52.6 6.9 18 178-195 37-54 (324)
107 1uaa_A REP helicase, protein ( 94.7 0.038 1.3E-06 58.1 6.5 70 163-258 2-71 (673)
108 3bos_A Putative DNA replicatio 94.7 0.036 1.2E-06 49.5 5.5 19 177-195 51-69 (242)
109 2v1u_A Cell division control p 94.6 0.1 3.5E-06 50.1 9.0 19 177-195 43-61 (387)
110 3syl_A Protein CBBX; photosynt 94.6 0.056 1.9E-06 50.6 6.8 18 178-195 67-84 (309)
111 3te6_A Regulatory protein SIR3 94.5 0.15 5.3E-06 48.3 9.5 44 307-358 131-174 (318)
112 3u61_B DNA polymerase accessor 94.4 0.081 2.8E-06 49.9 7.5 15 307-321 104-118 (324)
113 1a5t_A Delta prime, HOLB; zinc 94.4 0.45 1.5E-05 45.2 12.7 33 164-196 3-42 (334)
114 3vfd_A Spastin; ATPase, microt 94.2 0.71 2.4E-05 44.7 14.0 53 140-195 111-165 (389)
115 2j9r_A Thymidine kinase; TK1, 94.1 0.17 5.9E-06 45.0 8.4 24 178-201 28-51 (214)
116 2z4s_A Chromosomal replication 94.0 0.071 2.4E-06 53.0 6.4 18 178-195 130-147 (440)
117 3u4q_A ATP-dependent helicase/ 94.0 0.076 2.6E-06 59.8 7.2 71 163-257 10-80 (1232)
118 3eie_A Vacuolar protein sortin 93.9 0.48 1.7E-05 44.7 11.8 50 140-195 14-68 (322)
119 1sxj_E Activator 1 40 kDa subu 93.8 0.3 1E-05 46.5 10.3 43 141-195 11-53 (354)
120 1pjr_A PCRA; DNA repair, DNA r 93.8 0.13 4.5E-06 54.5 8.3 70 162-257 10-79 (724)
121 2w58_A DNAI, primosome compone 93.8 0.18 6E-06 43.9 7.9 17 179-195 55-71 (202)
122 2hjv_A ATP-dependent RNA helic 93.7 0.37 1.3E-05 40.5 9.6 73 234-316 35-111 (163)
123 2rb4_A ATP-dependent RNA helic 93.6 0.49 1.7E-05 40.2 10.3 72 234-315 34-109 (175)
124 3e2i_A Thymidine kinase; Zn-bi 93.6 0.27 9.1E-06 43.8 8.6 23 177-199 27-49 (219)
125 2orv_A Thymidine kinase; TP4A 93.5 0.21 7.3E-06 44.9 8.0 25 177-201 18-42 (234)
126 1xwi_A SKD1 protein; VPS4B, AA 93.4 0.44 1.5E-05 45.1 10.5 50 140-195 8-62 (322)
127 2qby_B CDC6 homolog 3, cell di 93.4 0.17 6E-06 48.6 7.9 18 178-195 45-62 (384)
128 2qby_A CDC6 homolog 1, cell di 93.2 0.2 7E-06 47.8 8.0 19 177-195 44-62 (386)
129 2chg_A Replication factor C sm 93.1 0.57 2E-05 40.5 10.2 16 179-194 39-54 (226)
130 1fnn_A CDC6P, cell division co 93.1 0.18 6.3E-06 48.4 7.5 16 180-195 46-61 (389)
131 3pfi_A Holliday junction ATP-d 93.0 0.33 1.1E-05 45.9 9.0 42 142-195 27-72 (338)
132 3dm5_A SRP54, signal recogniti 92.9 0.81 2.8E-05 45.3 11.8 19 179-197 101-119 (443)
133 1w4r_A Thymidine kinase; type 92.8 0.21 7.1E-06 43.8 6.6 23 177-199 19-41 (195)
134 2p6n_A ATP-dependent RNA helic 92.8 0.43 1.5E-05 41.4 8.8 72 234-315 54-129 (191)
135 1fuk_A Eukaryotic initiation f 92.8 0.53 1.8E-05 39.6 9.1 73 234-316 30-106 (165)
136 1sxj_A Activator 1 95 kDa subu 92.7 0.72 2.5E-05 46.7 11.5 19 178-196 77-95 (516)
137 3eaq_A Heat resistant RNA depe 92.6 0.57 1.9E-05 41.3 9.5 71 234-314 31-105 (212)
138 2qz4_A Paraplegin; AAA+, SPG7, 92.5 0.67 2.3E-05 41.8 10.1 52 141-195 3-56 (262)
139 1njg_A DNA polymerase III subu 92.2 2.2 7.5E-05 37.1 13.0 15 180-194 47-61 (250)
140 2p65_A Hypothetical protein PF 92.2 0.61 2.1E-05 39.2 8.9 18 178-195 43-60 (187)
141 2r6a_A DNAB helicase, replicat 92.1 1.1 3.8E-05 44.5 11.9 46 307-355 312-362 (454)
142 2qgz_A Helicase loader, putati 92.1 0.37 1.3E-05 45.3 8.0 18 178-195 152-169 (308)
143 3pvs_A Replication-associated 91.7 0.16 5.3E-06 50.7 5.0 17 179-195 51-67 (447)
144 1t5i_A C_terminal domain of A 91.3 0.72 2.4E-05 39.1 8.2 73 234-316 31-107 (172)
145 3hjh_A Transcription-repair-co 91.3 0.63 2.1E-05 46.7 9.0 89 177-299 13-117 (483)
146 2q6t_A DNAB replication FORK h 91.2 1.1 3.7E-05 44.4 10.6 45 308-355 310-361 (444)
147 1iqp_A RFCS; clamp loader, ext 91.1 1.7 5.7E-05 40.4 11.4 16 180-195 48-63 (327)
148 2l8b_A Protein TRAI, DNA helic 90.2 1.6 5.5E-05 37.7 9.2 121 165-356 36-158 (189)
149 2jgn_A DBX, DDX3, ATP-dependen 90.1 0.6 2.1E-05 40.2 6.7 72 233-314 45-120 (185)
150 3lda_A DNA repair protein RAD5 89.8 5.9 0.0002 38.6 14.3 27 137-163 80-106 (400)
151 2w0m_A SSO2452; RECA, SSPF, un 89.7 0.99 3.4E-05 39.6 8.0 21 176-196 21-41 (235)
152 2dr3_A UPF0273 protein PH0284; 89.3 0.78 2.7E-05 40.8 7.1 21 176-196 21-41 (247)
153 3fht_A ATP-dependent RNA helic 89.1 1.7 5.9E-05 41.7 9.9 71 234-314 266-340 (412)
154 1sxj_D Activator 1 41 kDa subu 89.1 1.5 5.2E-05 41.2 9.4 17 179-195 59-75 (353)
155 1cr0_A DNA primase/helicase; R 89.1 0.79 2.7E-05 42.5 7.2 23 175-197 32-54 (296)
156 3pey_A ATP-dependent RNA helic 89.0 8.1 0.00028 36.5 14.6 77 233-319 242-322 (395)
157 3i32_A Heat resistant RNA depe 89.0 1.1 3.8E-05 41.9 8.1 71 234-314 28-102 (300)
158 2i4i_A ATP-dependent RNA helic 88.7 1.6 5.6E-05 42.0 9.5 72 233-314 275-350 (417)
159 2ehv_A Hypothetical protein PH 88.6 0.5 1.7E-05 42.2 5.2 47 307-361 134-185 (251)
160 2z43_A DNA repair and recombin 88.4 2.3 7.8E-05 40.1 10.0 24 177-200 106-129 (324)
161 3i5x_A ATP-dependent RNA helic 88.3 2 6.8E-05 43.6 10.1 78 233-317 338-419 (563)
162 3m6a_A ATP-dependent protease 88.1 0.44 1.5E-05 48.7 5.0 19 177-195 107-125 (543)
163 1xti_A Probable ATP-dependent 87.9 2.4 8.2E-05 40.4 10.0 75 233-317 249-327 (391)
164 3sqw_A ATP-dependent RNA helic 87.6 2.3 7.7E-05 43.5 10.1 78 233-317 287-368 (579)
165 2zan_A Vacuolar protein sortin 87.3 0.84 2.9E-05 45.3 6.4 54 139-195 129-184 (444)
166 4a1f_A DNAB helicase, replicat 87.2 0.32 1.1E-05 46.5 3.1 46 308-356 156-205 (338)
167 1g5t_A COB(I)alamin adenosyltr 87.1 3.4 0.00012 36.0 9.4 24 178-201 28-51 (196)
168 1s2m_A Putative ATP-dependent 86.9 2.7 9.3E-05 40.2 9.8 72 234-315 258-333 (400)
169 2db3_A ATP-dependent RNA helic 86.9 2.5 8.5E-05 41.5 9.6 69 236-314 302-374 (434)
170 2v1x_A ATP-dependent DNA helic 86.9 2.4 8.1E-05 43.7 9.7 72 233-314 266-341 (591)
171 2eyq_A TRCF, transcription-rep 86.7 1.4 4.8E-05 49.1 8.3 80 233-320 811-894 (1151)
172 2j0s_A ATP-dependent RNA helic 86.3 3 0.0001 40.1 9.7 71 234-314 276-350 (410)
173 1yks_A Genome polyprotein [con 86.2 1.5 5.2E-05 43.3 7.6 69 234-313 177-245 (440)
174 1hv8_A Putative ATP-dependent 86.1 2.1 7.3E-05 40.1 8.4 74 233-316 237-314 (367)
175 1oyw_A RECQ helicase, ATP-depe 85.9 2.7 9.1E-05 42.5 9.4 72 234-315 236-311 (523)
176 1sxj_B Activator 1 37 kDa subu 85.7 2.2 7.5E-05 39.5 8.1 15 180-194 44-58 (323)
177 1w5s_A Origin recognition comp 85.3 3.4 0.00012 39.7 9.6 29 309-337 139-169 (412)
178 2fna_A Conserved hypothetical 84.7 21 0.0007 33.0 14.6 27 309-335 138-167 (357)
179 3co5_A Putative two-component 84.5 0.66 2.3E-05 38.0 3.4 21 174-194 23-43 (143)
180 1jr3_A DNA polymerase III subu 84.4 12 0.00041 35.1 12.9 16 180-195 40-55 (373)
181 2i1q_A DNA repair and recombin 83.3 5.1 0.00017 37.4 9.5 23 178-200 98-120 (322)
182 3bh0_A DNAB-like replicative h 82.8 1.7 6E-05 40.7 6.0 45 308-355 179-229 (315)
183 1nlf_A Regulatory protein REPA 82.5 4.7 0.00016 36.8 8.7 25 174-198 26-50 (279)
184 2yjt_D ATP-dependent RNA helic 83.1 0.26 8.9E-06 41.8 0.0 72 234-315 30-105 (170)
185 3n70_A Transport activator; si 82.3 0.8 2.7E-05 37.5 3.0 20 176-195 22-41 (145)
186 2oap_1 GSPE-2, type II secreti 81.2 1.5 5.2E-05 44.2 5.2 41 153-195 236-277 (511)
187 1wp9_A ATP-dependent RNA helic 81.2 3.9 0.00013 39.7 8.1 76 233-318 360-447 (494)
188 2v6i_A RNA helicase; membrane, 80.5 2.1 7.3E-05 42.1 5.9 68 234-312 171-238 (431)
189 1pzn_A RAD51, DNA repair and r 80.0 8 0.00027 36.7 9.6 23 177-199 130-152 (349)
190 3tbk_A RIG-I helicase domain; 79.4 4 0.00014 40.8 7.7 77 234-316 389-478 (555)
191 2wv9_A Flavivirin protease NS2 79.3 4.1 0.00014 42.6 7.8 69 234-313 410-478 (673)
192 2jlq_A Serine protease subunit 78.6 5.1 0.00017 39.5 8.0 69 234-313 188-256 (451)
193 2xau_A PRE-mRNA-splicing facto 77.4 5.7 0.0002 42.2 8.4 75 234-314 303-393 (773)
194 3e70_C DPA, signal recognition 77.4 10 0.00034 35.8 9.3 20 177-196 128-147 (328)
195 2eyu_A Twitching motility prot 77.3 1.6 5.6E-05 39.8 3.7 21 175-195 22-42 (261)
196 2ykg_A Probable ATP-dependent 76.0 2.9 9.8E-05 43.6 5.6 79 233-317 397-488 (696)
197 4b4t_M 26S protease regulatory 75.7 0.75 2.6E-05 45.5 0.9 53 139-194 176-231 (434)
198 2zr9_A Protein RECA, recombina 75.7 3.6 0.00012 39.2 5.8 23 177-199 60-82 (349)
199 2yhs_A FTSY, cell division pro 75.5 10 0.00035 38.0 9.1 19 179-197 294-312 (503)
200 2whx_A Serine protease/ntpase/ 75.4 6.5 0.00022 40.6 8.0 69 234-313 355-423 (618)
201 1v5w_A DMC1, meiotic recombina 75.3 15 0.00051 34.7 10.0 24 177-200 121-144 (343)
202 2z0m_A 337AA long hypothetical 75.0 5.6 0.00019 36.7 6.9 71 233-317 219-293 (337)
203 3b85_A Phosphate starvation-in 74.7 3.5 0.00012 36.1 5.0 35 161-195 5-39 (208)
204 3p32_A Probable GTPase RV1496/ 74.6 29 0.00099 32.8 11.9 25 347-371 257-281 (355)
205 3cf0_A Transitional endoplasmi 74.5 0.76 2.6E-05 42.8 0.6 53 140-195 11-66 (301)
206 3eiq_A Eukaryotic initiation f 74.4 2.9 9.7E-05 40.2 4.8 71 234-314 280-354 (414)
207 1e9r_A Conjugal transfer prote 74.1 2.7 9.2E-05 41.2 4.5 19 177-195 52-70 (437)
208 1vma_A Cell division protein F 74.0 56 0.0019 30.2 13.9 20 178-197 104-123 (306)
209 1u0j_A DNA replication protein 73.9 5.4 0.00019 36.5 6.2 43 151-196 74-122 (267)
210 4gl2_A Interferon-induced heli 73.8 2.5 8.7E-05 44.0 4.5 75 234-314 400-488 (699)
211 3rc3_A ATP-dependent RNA helic 73.1 12 0.0004 39.2 9.2 75 235-320 321-401 (677)
212 3bgw_A DNAB-like replicative h 72.4 4.4 0.00015 40.0 5.6 45 308-355 308-358 (444)
213 2gza_A Type IV secretion syste 72.3 2.1 7.3E-05 41.0 3.2 22 174-195 171-192 (361)
214 1q57_A DNA primase/helicase; d 71.5 4.3 0.00015 40.7 5.4 26 176-201 240-265 (503)
215 2px0_A Flagellar biosynthesis 71.3 6.4 0.00022 36.5 6.2 21 177-197 104-124 (296)
216 3hws_A ATP-dependent CLP prote 70.8 4.4 0.00015 38.5 5.1 19 177-195 50-68 (363)
217 3o8b_A HCV NS3 protease/helica 70.7 6.1 0.00021 41.1 6.4 67 233-313 395-461 (666)
218 2oca_A DAR protein, ATP-depend 70.3 14 0.00049 36.5 9.0 76 234-318 347-426 (510)
219 1xp8_A RECA protein, recombina 69.4 17 0.0006 34.7 8.9 24 177-201 73-96 (366)
220 1jbk_A CLPB protein; beta barr 69.3 1.9 6.6E-05 36.0 1.9 18 178-195 43-60 (195)
221 3nbx_X ATPase RAVA; AAA+ ATPas 69.0 4.9 0.00017 40.4 5.2 31 164-194 27-57 (500)
222 1kgd_A CASK, peripheral plasma 68.6 2 6.7E-05 36.5 1.8 20 176-195 3-22 (180)
223 3cmu_A Protein RECA, recombina 68.3 2.6 8.8E-05 49.4 3.2 23 178-200 1427-1449(2050)
224 2pt7_A CAG-ALFA; ATPase, prote 67.9 2.5 8.5E-05 40.0 2.5 21 174-194 167-187 (330)
225 2x8a_A Nuclear valosin-contain 67.8 0.9 3.1E-05 41.8 -0.6 53 140-195 6-61 (274)
226 1tue_A Replication protein E1; 67.7 4 0.00014 35.9 3.6 48 151-201 29-80 (212)
227 4b4t_J 26S protease regulatory 67.4 1.9 6.5E-05 42.1 1.6 53 139-194 143-198 (405)
228 3vaa_A Shikimate kinase, SK; s 67.3 2.3 7.7E-05 36.7 2.0 20 176-195 23-42 (199)
229 2bjv_A PSP operon transcriptio 66.8 3.3 0.00011 37.4 3.1 19 176-194 27-45 (265)
230 1p9r_A General secretion pathw 66.0 2.2 7.4E-05 42.0 1.7 19 177-195 166-184 (418)
231 4b4t_L 26S protease subunit RP 65.7 1.5 5.1E-05 43.4 0.5 54 139-195 176-232 (437)
232 2v3c_C SRP54, signal recogniti 65.5 5.7 0.00019 39.1 4.7 19 179-197 100-118 (432)
233 4b4t_H 26S protease regulatory 65.3 1.7 6E-05 43.1 0.9 53 139-194 204-259 (467)
234 3iij_A Coilin-interacting nucl 65.1 2 6.9E-05 36.2 1.2 21 176-196 9-29 (180)
235 3nwn_A Kinesin-like protein KI 65.1 3.7 0.00013 39.4 3.1 25 171-195 96-122 (359)
236 2j41_A Guanylate kinase; GMP, 65.0 2.6 8.7E-05 36.2 1.9 20 176-195 4-23 (207)
237 2z83_A Helicase/nucleoside tri 64.8 7 0.00024 38.6 5.3 69 234-313 190-258 (459)
238 2xxa_A Signal recognition part 64.6 6.3 0.00022 38.8 4.8 19 179-197 101-119 (433)
239 1lvg_A Guanylate kinase, GMP k 64.5 3.4 0.00012 35.7 2.6 20 177-196 3-22 (198)
240 1ofh_A ATP-dependent HSL prote 64.3 9.8 0.00033 34.7 5.9 19 177-195 49-67 (310)
241 2r44_A Uncharacterized protein 64.2 2.3 7.8E-05 39.9 1.5 24 171-194 39-62 (331)
242 3oiy_A Reverse gyrase helicase 64.0 13 0.00043 35.8 6.9 73 235-315 253-327 (414)
243 4a2p_A RIG-I, retinoic acid in 63.8 6.7 0.00023 39.2 5.0 78 233-316 389-479 (556)
244 1bg2_A Kinesin; motor protein, 63.7 4 0.00014 38.5 3.1 24 172-195 70-95 (325)
245 4a2w_A RIG-I, retinoic acid in 63.3 10 0.00035 41.2 6.6 78 233-316 630-720 (936)
246 3trf_A Shikimate kinase, SK; a 63.3 2.9 9.8E-05 35.3 1.8 19 178-196 5-23 (185)
247 3euj_A Chromosome partition pr 63.3 4.5 0.00016 40.4 3.5 37 307-354 413-449 (483)
248 4etp_A Kinesin-like protein KA 63.2 4.1 0.00014 39.7 3.1 25 171-195 132-158 (403)
249 2va8_A SSO2462, SKI2-type heli 63.1 20 0.0007 37.3 8.8 76 234-315 252-363 (715)
250 3tau_A Guanylate kinase, GMP k 62.8 4 0.00014 35.5 2.7 20 177-196 7-26 (208)
251 2p6r_A Afuhel308 helicase; pro 62.8 14 0.00047 38.6 7.4 75 234-314 242-346 (702)
252 3dc4_A Kinesin-like protein NO 62.5 4.1 0.00014 38.9 2.9 24 172-195 87-112 (344)
253 1t5c_A CENP-E protein, centrom 62.4 4 0.00014 39.0 2.8 24 172-195 70-95 (349)
254 2ffh_A Protein (FFH); SRP54, s 62.3 20 0.00068 35.1 7.9 21 177-197 97-117 (425)
255 1v8k_A Kinesin-like protein KI 62.3 4.2 0.00014 39.7 3.0 24 172-195 147-172 (410)
256 3gbj_A KIF13B protein; kinesin 62.2 4 0.00014 39.1 2.8 25 171-195 84-110 (354)
257 2h58_A Kinesin-like protein KI 62.2 4.4 0.00015 38.3 3.1 25 171-195 72-98 (330)
258 2zfi_A Kinesin-like protein KI 62.2 4.4 0.00015 39.0 3.1 24 172-195 82-107 (366)
259 3cob_A Kinesin heavy chain-lik 62.1 3.9 0.00013 39.4 2.7 25 171-195 71-97 (369)
260 4b4t_K 26S protease regulatory 62.0 2.1 7.1E-05 42.2 0.7 54 139-195 167-223 (428)
261 2nr8_A Kinesin-like protein KI 61.8 4.5 0.00015 38.8 3.1 25 171-195 95-121 (358)
262 1qhx_A CPT, protein (chloramph 61.7 3.2 0.00011 34.7 1.8 18 178-195 3-20 (178)
263 3lw7_A Adenylate kinase relate 61.7 3 0.0001 34.4 1.6 16 180-195 3-18 (179)
264 3jvv_A Twitching mobility prot 61.4 3.6 0.00012 39.4 2.3 20 176-195 121-140 (356)
265 1x88_A Kinesin-like protein KI 61.4 4 0.00014 39.1 2.7 24 172-195 81-106 (359)
266 1goj_A Kinesin, kinesin heavy 61.3 4.4 0.00015 38.8 2.9 24 172-195 73-98 (355)
267 2vvg_A Kinesin-2; motor protei 61.2 4.7 0.00016 38.5 3.1 24 172-195 82-107 (350)
268 3b9p_A CG5977-PA, isoform A; A 61.1 3.2 0.00011 38.1 1.9 53 140-195 17-71 (297)
269 3b6u_A Kinesin-like protein KI 61.1 4.8 0.00016 38.8 3.1 24 172-195 94-119 (372)
270 4ag6_A VIRB4 ATPase, type IV s 61.1 4.3 0.00015 39.1 2.9 44 308-358 262-308 (392)
271 2y65_A Kinesin, kinesin heavy 61.1 4.9 0.00017 38.6 3.2 24 172-195 77-102 (365)
272 1zp6_A Hypothetical protein AT 61.0 3 0.0001 35.4 1.5 20 176-195 7-26 (191)
273 4a14_A Kinesin, kinesin-like p 60.9 4.9 0.00017 38.3 3.2 24 172-195 76-101 (344)
274 3u06_A Protein claret segregat 60.7 4.6 0.00016 39.5 3.0 25 171-195 130-156 (412)
275 3t0q_A AGR253WP; kinesin, alph 60.6 4.4 0.00015 38.7 2.8 25 171-195 77-103 (349)
276 1y63_A LMAJ004144AAA protein; 60.6 3.5 0.00012 35.0 1.9 19 177-195 9-27 (184)
277 3lre_A Kinesin-like protein KI 60.5 4.7 0.00016 38.6 2.9 24 172-195 98-123 (355)
278 1f9v_A Kinesin-like protein KA 60.5 4.1 0.00014 38.9 2.5 25 171-195 76-102 (347)
279 3fho_A ATP-dependent RNA helic 60.4 3.1 0.00011 41.8 1.7 72 234-315 357-432 (508)
280 3uk6_A RUVB-like 2; hexameric 60.3 3.3 0.00011 39.2 1.9 18 178-195 70-87 (368)
281 3bfn_A Kinesin-like protein KI 60.3 4.3 0.00015 39.3 2.6 24 172-195 91-116 (388)
282 4a2q_A RIG-I, retinoic acid in 60.0 9.9 0.00034 40.4 5.7 78 233-316 630-720 (797)
283 1kag_A SKI, shikimate kinase I 59.9 4 0.00014 33.9 2.1 18 178-195 4-21 (173)
284 2ewv_A Twitching motility prot 59.8 3.7 0.00013 39.5 2.1 21 175-195 133-153 (372)
285 2wbe_C Bipolar kinesin KRP-130 59.7 4.6 0.00016 38.9 2.7 24 172-195 93-118 (373)
286 2qor_A Guanylate kinase; phosp 59.7 4.1 0.00014 35.2 2.2 21 175-195 9-29 (204)
287 1ixz_A ATP-dependent metallopr 59.6 2.1 7.2E-05 38.4 0.3 53 140-195 12-66 (254)
288 3tr0_A Guanylate kinase, GMP k 59.6 5 0.00017 34.3 2.7 19 177-195 6-24 (205)
289 1kht_A Adenylate kinase; phosp 59.6 3.7 0.00013 34.6 1.9 19 177-195 2-20 (192)
290 2zj8_A DNA helicase, putative 59.4 24 0.00081 36.9 8.4 77 234-317 237-346 (720)
291 3d8b_A Fidgetin-like protein 1 59.4 9.3 0.00032 36.3 4.9 53 140-195 80-134 (357)
292 1z6g_A Guanylate kinase; struc 59.1 5.2 0.00018 35.1 2.8 21 175-195 20-40 (218)
293 3vkg_A Dynein heavy chain, cyt 58.8 6.7 0.00023 48.0 4.4 49 149-197 874-925 (3245)
294 3fmp_B ATP-dependent RNA helic 58.8 2 6.9E-05 42.6 0.0 70 234-313 333-406 (479)
295 2owm_A Nckin3-434, related to 58.4 5.5 0.00019 39.3 3.1 24 172-195 129-154 (443)
296 1ls1_A Signal recognition part 58.4 41 0.0014 30.9 9.0 20 177-196 97-116 (295)
297 3exa_A TRNA delta(2)-isopenten 58.1 3.9 0.00013 38.5 1.9 17 179-195 4-20 (322)
298 3foz_A TRNA delta(2)-isopenten 58.1 3.9 0.00013 38.4 1.9 16 180-195 12-27 (316)
299 1ex7_A Guanylate kinase; subst 58.1 3.8 0.00013 35.3 1.7 16 179-194 2-17 (186)
300 1ojl_A Transcriptional regulat 58.1 5 0.00017 37.3 2.7 18 177-194 24-41 (304)
301 1znw_A Guanylate kinase, GMP k 57.9 4.3 0.00015 35.2 2.0 22 174-195 16-37 (207)
302 2heh_A KIF2C protein; kinesin, 57.8 5.4 0.00018 38.6 2.8 24 172-195 127-152 (387)
303 3a00_A Guanylate kinase, GMP k 57.6 4.4 0.00015 34.4 2.0 17 179-195 2-18 (186)
304 4eun_A Thermoresistant glucoki 57.5 4.5 0.00015 34.8 2.1 19 177-195 28-46 (200)
305 4gp7_A Metallophosphoesterase; 57.3 3.8 0.00013 34.4 1.5 21 177-197 8-28 (171)
306 1s96_A Guanylate kinase, GMP k 57.2 4.6 0.00016 35.7 2.1 23 174-196 12-34 (219)
307 2q5c_A NTRC family transcripti 57.1 92 0.0031 26.6 11.2 62 234-300 4-66 (196)
308 2ze6_A Isopentenyl transferase 57.0 3.9 0.00014 36.9 1.7 16 180-195 3-18 (253)
309 1lv7_A FTSH; alpha/beta domain 56.9 4.2 0.00014 36.5 1.8 53 140-195 8-62 (257)
310 3ney_A 55 kDa erythrocyte memb 56.9 5.5 0.00019 34.7 2.5 20 176-195 17-36 (197)
311 2qmh_A HPR kinase/phosphorylas 56.6 4.8 0.00016 35.3 2.0 18 177-194 33-50 (205)
312 3a8t_A Adenylate isopentenyltr 56.3 4.1 0.00014 38.7 1.7 18 178-195 40-57 (339)
313 2zts_A Putative uncharacterize 56.2 7.3 0.00025 34.3 3.3 19 177-195 29-47 (251)
314 1j8m_F SRP54, signal recogniti 55.9 31 0.001 31.8 7.7 20 178-197 98-117 (297)
315 3dmq_A RNA polymerase-associat 55.5 44 0.0015 36.3 10.0 77 233-318 502-584 (968)
316 1knq_A Gluconate kinase; ALFA/ 55.4 4.2 0.00014 33.9 1.5 19 177-195 7-25 (175)
317 3kb2_A SPBC2 prophage-derived 55.3 4.3 0.00015 33.5 1.5 16 180-195 3-18 (173)
318 4b4t_I 26S protease regulatory 55.3 2.8 9.4E-05 41.3 0.3 54 139-195 177-233 (437)
319 1ly1_A Polynucleotide kinase; 54.9 4.6 0.00016 33.6 1.7 16 180-195 4-19 (181)
320 2rep_A Kinesin-like protein KI 54.9 5.3 0.00018 38.5 2.3 25 171-195 107-133 (376)
321 1iy2_A ATP-dependent metallopr 54.4 2.8 9.5E-05 38.3 0.2 53 140-195 36-90 (278)
322 1m7g_A Adenylylsulfate kinase; 54.2 6.3 0.00022 34.1 2.5 31 164-195 12-42 (211)
323 4akg_A Glutathione S-transfera 54.0 10 0.00035 45.9 4.8 47 150-197 892-942 (2695)
324 2r2a_A Uncharacterized protein 53.7 5.9 0.0002 34.4 2.2 50 309-363 88-138 (199)
325 1hqc_A RUVB; extended AAA-ATPa 53.6 5.4 0.00018 36.9 2.1 18 178-195 38-55 (324)
326 2j37_W Signal recognition part 53.0 23 0.0008 35.4 6.7 19 179-197 102-120 (504)
327 3cm0_A Adenylate kinase; ATP-b 52.9 4 0.00014 34.3 1.0 20 177-196 3-22 (186)
328 1um8_A ATP-dependent CLP prote 52.4 5.7 0.0002 37.9 2.1 18 178-195 72-89 (376)
329 2qp9_X Vacuolar protein sortin 52.3 5.9 0.0002 37.7 2.1 50 140-195 47-101 (355)
330 3t15_A Ribulose bisphosphate c 52.3 5.1 0.00017 37.0 1.6 16 179-194 37-52 (293)
331 1ry6_A Internal kinesin; kines 52.0 7.9 0.00027 37.1 2.9 19 177-195 82-102 (360)
332 2c9o_A RUVB-like 1; hexameric 51.8 5.5 0.00019 39.3 1.9 47 141-195 34-80 (456)
333 4fcw_A Chaperone protein CLPB; 51.2 6.5 0.00022 36.1 2.2 17 179-195 48-64 (311)
334 3lnc_A Guanylate kinase, GMP k 51.1 7.4 0.00025 34.2 2.5 21 175-195 24-44 (231)
335 3crm_A TRNA delta(2)-isopenten 50.3 5.7 0.0002 37.4 1.6 16 180-195 7-22 (323)
336 2bdt_A BH3686; alpha-beta prot 50.3 6 0.00021 33.4 1.7 30 349-378 147-177 (189)
337 2c95_A Adenylate kinase 1; tra 50.3 6.7 0.00023 33.1 2.0 20 176-195 7-26 (196)
338 1gvn_B Zeta; postsegregational 49.9 6.7 0.00023 36.1 2.0 17 179-195 34-50 (287)
339 1g8p_A Magnesium-chelatase 38 49.9 8.3 0.00028 36.0 2.7 18 178-195 45-62 (350)
340 3c8u_A Fructokinase; YP_612366 49.9 6.6 0.00023 34.0 1.9 18 177-194 21-38 (208)
341 3t61_A Gluconokinase; PSI-biol 49.7 6.3 0.00022 33.8 1.7 17 179-195 19-35 (202)
342 2v54_A DTMP kinase, thymidylat 49.6 6.8 0.00023 33.4 1.9 20 177-196 3-22 (204)
343 3d3q_A TRNA delta(2)-isopenten 49.5 5.9 0.0002 37.6 1.6 16 180-195 9-24 (340)
344 2ius_A DNA translocase FTSK; n 49.5 9.6 0.00033 38.3 3.2 25 176-200 165-189 (512)
345 3uie_A Adenylyl-sulfate kinase 49.0 6.1 0.00021 33.9 1.5 20 176-195 23-42 (200)
346 3nwj_A ATSK2; P loop, shikimat 48.9 9.2 0.00031 34.5 2.7 22 175-196 45-66 (250)
347 2dyd_A Poly(A)-binding protein 48.8 1.5 5.1E-05 32.6 -2.1 42 375-416 40-81 (85)
348 1fuu_A Yeast initiation factor 48.8 3.6 0.00012 39.0 0.0 71 234-314 259-333 (394)
349 2rhm_A Putative kinase; P-loop 48.8 6 0.0002 33.4 1.4 18 178-195 5-22 (193)
350 2r62_A Cell division protease 48.6 3.8 0.00013 36.9 0.1 18 178-195 44-61 (268)
351 1nmr_A Poly(A)-binding protein 48.5 2.8 9.6E-05 31.2 -0.7 42 375-416 41-82 (85)
352 3lhi_A Putative 6-phosphogluco 48.5 20 0.00068 31.9 4.9 27 291-317 45-71 (232)
353 1ye8_A Protein THEP1, hypothet 48.3 9 0.00031 32.5 2.4 16 180-195 2-17 (178)
354 3kta_A Chromosome segregation 47.9 6.9 0.00024 32.8 1.6 16 180-195 28-43 (182)
355 1zuh_A Shikimate kinase; alpha 47.8 7 0.00024 32.3 1.7 18 179-196 8-25 (168)
356 3kta_B Chromosome segregation 47.6 10 0.00035 32.1 2.6 40 308-355 86-125 (173)
357 1zd8_A GTP:AMP phosphotransfer 47.4 7.3 0.00025 34.1 1.8 19 177-195 6-24 (227)
358 1f2t_A RAD50 ABC-ATPase; DNA d 47.4 7.3 0.00025 31.9 1.7 15 180-194 25-39 (149)
359 1i2t_A HYD protein; four alpha 47.2 2.1 7.2E-05 29.7 -1.4 41 375-415 19-59 (61)
360 1tev_A UMP-CMP kinase; ploop, 47.2 6.6 0.00022 33.0 1.4 18 178-195 3-20 (196)
361 3qf7_A RAD50; ABC-ATPase, ATPa 47.1 6.9 0.00024 37.5 1.7 31 307-337 302-332 (365)
362 3eph_A TRNA isopentenyltransfe 47.0 7.2 0.00024 38.0 1.7 18 318-335 210-227 (409)
363 1g9l_A Polyadenylate-binding p 46.9 3.5 0.00012 33.9 -0.4 56 357-416 70-125 (144)
364 1sxj_C Activator 1 40 kDa subu 46.9 26 0.00088 32.7 5.7 17 180-196 48-64 (340)
365 3asz_A Uridine kinase; cytidin 46.7 6.9 0.00024 33.7 1.5 19 177-195 5-23 (211)
366 3hu3_A Transitional endoplasmi 46.5 6.4 0.00022 39.4 1.4 19 177-195 237-255 (489)
367 2cvh_A DNA repair and recombin 46.4 10 0.00035 32.6 2.6 20 177-196 19-38 (220)
368 1aky_A Adenylate kinase; ATP:A 46.2 8.3 0.00028 33.5 1.9 19 177-195 3-21 (220)
369 2pez_A Bifunctional 3'-phospho 46.2 7.3 0.00025 32.6 1.5 19 177-195 4-22 (179)
370 2bwj_A Adenylate kinase 5; pho 46.1 9.2 0.00032 32.3 2.2 19 177-195 11-29 (199)
371 2i3b_A HCR-ntpase, human cance 45.8 12 0.00039 32.2 2.8 29 306-334 103-133 (189)
372 3tif_A Uncharacterized ABC tra 45.4 8.7 0.0003 34.2 2.0 45 306-357 161-205 (235)
373 2r2a_A Uncharacterized protein 45.2 11 0.00039 32.6 2.7 16 180-195 7-22 (199)
374 1zak_A Adenylate kinase; ATP:A 45.1 8.3 0.00028 33.6 1.8 19 177-195 4-22 (222)
375 1tf7_A KAIC; homohexamer, hexa 45.0 78 0.0027 31.5 9.3 124 177-354 280-414 (525)
376 2iut_A DNA translocase FTSK; n 45.0 19 0.00065 36.7 4.6 24 178-201 214-237 (574)
377 3fb4_A Adenylate kinase; psych 45.0 8.1 0.00028 33.4 1.7 17 180-196 2-18 (216)
378 1n0w_A DNA repair protein RAD5 44.9 12 0.00042 32.6 2.9 25 176-200 22-46 (243)
379 2qt1_A Nicotinamide riboside k 44.9 5.5 0.00019 34.3 0.6 23 173-195 16-38 (207)
380 1nks_A Adenylate kinase; therm 44.9 8.1 0.00028 32.4 1.6 16 180-195 3-18 (194)
381 4f4c_A Multidrug resistance pr 44.4 40 0.0014 38.1 7.5 32 306-337 570-601 (1321)
382 3dl0_A Adenylate kinase; phosp 44.4 8.4 0.00029 33.3 1.7 17 180-196 2-18 (216)
383 3pxg_A Negative regulator of g 44.3 12 0.00042 37.0 3.1 19 177-195 200-218 (468)
384 4a74_A DNA repair and recombin 44.2 9.8 0.00034 32.9 2.1 22 176-197 23-44 (231)
385 3u4q_B ATP-dependent helicase/ 44.2 18 0.0006 40.3 4.6 20 182-201 5-24 (1166)
386 2iyv_A Shikimate kinase, SK; t 44.2 9.5 0.00033 31.9 2.0 17 179-195 3-19 (184)
387 3k1j_A LON protease, ATP-depen 44.0 13 0.00044 38.2 3.3 23 173-195 55-77 (604)
388 1gm5_A RECG; helicase, replica 44.0 7.9 0.00027 41.2 1.7 82 233-320 577-669 (780)
389 1qf9_A UMP/CMP kinase, protein 43.7 8.5 0.00029 32.3 1.6 17 179-195 7-23 (194)
390 1via_A Shikimate kinase; struc 43.7 9.5 0.00033 31.7 1.9 17 179-195 5-21 (175)
391 2v9p_A Replication protein E1; 43.6 9.4 0.00032 35.6 1.9 21 175-195 123-143 (305)
392 2vli_A Antibiotic resistance p 43.5 9.3 0.00032 31.8 1.8 20 177-196 4-23 (183)
393 2chq_A Replication factor C sm 43.5 23 0.0008 32.1 4.8 41 141-194 14-54 (319)
394 2yvu_A Probable adenylyl-sulfa 43.5 8.4 0.00029 32.4 1.5 20 177-196 12-31 (186)
395 2cdn_A Adenylate kinase; phosp 43.4 9.8 0.00033 32.5 1.9 18 178-195 20-37 (201)
396 2wwf_A Thymidilate kinase, put 43.4 9.5 0.00032 32.7 1.9 19 177-195 9-27 (212)
397 3lwd_A 6-phosphogluconolactona 43.2 26 0.00091 30.9 4.8 27 291-317 44-70 (226)
398 1ifw_A Polyadenylate-binding p 43.2 2.9 9.8E-05 31.6 -1.3 41 376-416 41-81 (92)
399 4h1g_A Maltose binding protein 42.7 12 0.00042 39.2 2.9 25 171-195 454-480 (715)
400 1e6c_A Shikimate kinase; phosp 42.7 9.1 0.00031 31.6 1.6 17 179-195 3-19 (173)
401 2w00_A HSDR, R.ECOR124I; ATP-b 42.7 79 0.0027 34.7 9.4 26 233-258 536-561 (1038)
402 1nn5_A Similar to deoxythymidy 42.5 10 0.00035 32.5 1.9 19 177-195 8-26 (215)
403 1in4_A RUVB, holliday junction 42.4 12 0.00041 35.0 2.6 18 179-196 52-69 (334)
404 2if2_A Dephospho-COA kinase; a 42.2 9.5 0.00032 32.6 1.6 16 180-195 3-18 (204)
405 2pt5_A Shikimate kinase, SK; a 42.0 10 0.00034 31.1 1.7 16 180-195 2-17 (168)
406 3cf2_A TER ATPase, transitiona 41.8 7.5 0.00026 41.4 1.1 54 139-195 472-528 (806)
407 2plr_A DTMP kinase, probable t 41.7 9 0.00031 32.7 1.4 19 177-195 3-21 (213)
408 1jjv_A Dephospho-COA kinase; P 41.7 10 0.00034 32.5 1.7 16 180-195 4-19 (206)
409 3f9v_A Minichromosome maintena 41.7 11 0.00037 38.7 2.2 15 180-194 329-343 (595)
410 3auy_A DNA double-strand break 41.6 9.3 0.00032 36.5 1.6 15 181-195 28-42 (371)
411 1cke_A CK, MSSA, protein (cyti 41.6 11 0.00037 32.7 2.0 19 178-196 5-23 (227)
412 1gku_B Reverse gyrase, TOP-RG; 41.5 32 0.0011 37.8 6.1 77 234-318 275-352 (1054)
413 1ukz_A Uridylate kinase; trans 41.5 9.7 0.00033 32.5 1.6 17 179-195 16-32 (203)
414 4ag6_A VIRB4 ATPase, type IV s 41.4 20 0.00067 34.4 4.0 21 177-197 34-54 (392)
415 2jaq_A Deoxyguanosine kinase; 41.2 10 0.00034 32.2 1.6 16 180-195 2-17 (205)
416 1ak2_A Adenylate kinase isoenz 40.9 11 0.00038 33.1 1.9 19 177-195 15-33 (233)
417 3be4_A Adenylate kinase; malar 40.8 11 0.00037 32.8 1.8 18 178-195 5-22 (217)
418 1ko7_A HPR kinase/phosphatase; 40.7 32 0.0011 32.1 5.2 48 147-194 91-160 (314)
419 1tf5_A Preprotein translocase 40.7 80 0.0027 33.7 8.6 54 235-292 433-488 (844)
420 1w36_B RECB, exodeoxyribonucle 40.5 34 0.0012 38.1 6.2 64 177-257 16-79 (1180)
421 2pbr_A DTMP kinase, thymidylat 40.5 10 0.00036 31.7 1.6 16 180-195 2-17 (195)
422 1rj9_A FTSY, signal recognitio 40.4 14 0.00048 34.3 2.6 20 177-196 101-120 (304)
423 2bbw_A Adenylate kinase 4, AK4 40.3 12 0.0004 33.2 2.0 19 177-195 26-44 (246)
424 3mm4_A Histidine kinase homolo 40.2 1.6E+02 0.0056 24.6 10.3 69 174-257 16-84 (206)
425 4akg_A Glutathione S-transfera 40.0 11 0.00036 45.8 2.1 22 174-195 1263-1284(2695)
426 3b9q_A Chloroplast SRP recepto 39.5 13 0.00044 34.5 2.2 21 177-197 99-119 (302)
427 4e22_A Cytidylate kinase; P-lo 39.4 12 0.00041 33.5 2.0 20 177-196 26-45 (252)
428 1e4v_A Adenylate kinase; trans 39.1 11 0.00039 32.5 1.7 16 180-195 2-17 (214)
429 4dzz_A Plasmid partitioning pr 39.1 43 0.0015 28.1 5.5 13 185-197 9-21 (206)
430 3tqf_A HPR(Ser) kinase; transf 38.9 12 0.00041 31.9 1.7 19 177-195 15-33 (181)
431 2z0h_A DTMP kinase, thymidylat 38.8 11 0.00039 31.7 1.6 16 181-196 3-18 (197)
432 3h1t_A Type I site-specific re 38.8 1.3E+02 0.0043 30.3 9.8 79 233-317 438-526 (590)
433 1g41_A Heat shock protein HSLU 38.8 12 0.00043 36.8 2.1 18 178-195 50-67 (444)
434 2cbz_A Multidrug resistance-as 38.7 14 0.00049 32.8 2.3 27 307-333 144-170 (237)
435 3a4m_A L-seryl-tRNA(SEC) kinas 38.6 11 0.00039 33.8 1.7 18 178-195 4-21 (260)
436 2fsf_A Preprotein translocase 38.6 85 0.0029 33.5 8.4 55 234-292 441-497 (853)
437 1rz3_A Hypothetical protein rb 38.1 12 0.00041 32.1 1.6 18 178-195 22-39 (201)
438 2pcj_A ABC transporter, lipopr 38.1 13 0.00046 32.6 2.0 44 306-357 156-199 (224)
439 3qks_A DNA double-strand break 38.0 12 0.00041 32.3 1.7 16 180-195 25-40 (203)
440 1sgw_A Putative ABC transporte 37.4 16 0.00056 31.9 2.4 21 177-197 34-54 (214)
441 1uf9_A TT1252 protein; P-loop, 37.4 12 0.00042 31.6 1.6 16 180-195 10-25 (203)
442 4ddu_A Reverse gyrase; topoiso 37.3 38 0.0013 37.5 5.8 77 235-319 310-388 (1104)
443 2pze_A Cystic fibrosis transme 37.2 16 0.00054 32.3 2.3 26 306-331 146-171 (229)
444 2ff7_A Alpha-hemolysin translo 37.2 16 0.00053 32.8 2.3 45 306-359 161-205 (247)
445 2p5t_B PEZT; postsegregational 37.0 9.9 0.00034 34.1 0.9 18 178-195 32-49 (253)
446 1htw_A HI0065; nucleotide-bind 36.9 9.4 0.00032 31.7 0.7 20 176-195 31-50 (158)
447 1ji0_A ABC transporter; ATP bi 36.8 14 0.00049 32.9 2.0 19 177-195 31-49 (240)
448 1g6h_A High-affinity branched- 36.8 14 0.00049 33.3 2.0 47 306-360 169-215 (257)
449 2ghi_A Transport protein; mult 36.8 16 0.00054 33.0 2.3 43 307-358 172-214 (260)
450 2ce7_A Cell division protein F 36.3 13 0.00044 37.0 1.7 53 140-195 12-66 (476)
451 1b0u_A Histidine permease; ABC 36.0 15 0.00051 33.3 2.0 45 306-358 169-213 (262)
452 1jbk_A CLPB protein; beta barr 35.9 37 0.0013 27.7 4.5 14 308-321 115-128 (195)
453 3cmw_A Protein RECA, recombina 35.8 26 0.00089 40.5 4.3 92 178-323 1431-1524(1706)
454 2ri0_A Glucosamine-6-phosphate 35.8 74 0.0025 27.8 6.6 60 238-316 4-64 (234)
455 1nij_A Hypothetical protein YJ 35.7 31 0.0011 32.0 4.2 15 181-195 7-21 (318)
456 3gfo_A Cobalt import ATP-bindi 35.6 17 0.00057 33.3 2.3 48 306-360 159-206 (275)
457 1vht_A Dephospho-COA kinase; s 35.6 14 0.00047 32.0 1.6 17 179-195 5-21 (218)
458 2f1r_A Molybdopterin-guanine d 35.3 8.8 0.0003 32.4 0.3 17 180-196 4-20 (171)
459 2i3b_A HCR-ntpase, human cance 35.1 15 0.00053 31.4 1.8 20 178-197 1-20 (189)
460 2xb4_A Adenylate kinase; ATP-b 35.0 14 0.00048 32.2 1.6 16 180-195 2-17 (223)
461 3pxi_A Negative regulator of g 35.0 16 0.00055 38.5 2.3 19 177-195 200-218 (758)
462 1mv5_A LMRA, multidrug resista 34.8 15 0.00052 32.7 1.8 42 307-357 156-197 (243)
463 3nwp_A 6-phosphogluconolactona 34.8 29 0.001 30.8 3.7 27 291-317 48-74 (233)
464 2yz2_A Putative ABC transporte 34.8 16 0.00055 33.1 2.0 19 177-195 32-50 (266)
465 4g1u_C Hemin import ATP-bindin 34.6 18 0.00063 32.8 2.4 45 308-359 165-209 (266)
466 2nq2_C Hypothetical ABC transp 34.4 16 0.00055 32.9 1.9 19 177-195 30-48 (253)
467 2pju_A Propionate catabolism o 34.4 2.3E+02 0.008 24.7 9.9 63 235-300 13-78 (225)
468 3tlx_A Adenylate kinase 2; str 34.3 14 0.00047 32.9 1.4 20 177-196 28-47 (243)
469 2jeo_A Uridine-cytidine kinase 34.2 13 0.00044 33.0 1.3 20 177-196 24-43 (245)
470 2d2e_A SUFC protein; ABC-ATPas 34.1 21 0.00072 31.9 2.7 44 307-358 160-203 (250)
471 3vkg_A Dynein heavy chain, cyt 33.8 21 0.00071 43.9 3.2 21 174-194 1300-1320(3245)
472 3sr0_A Adenylate kinase; phosp 33.8 15 0.00051 32.0 1.5 16 180-195 2-17 (206)
473 3qkt_A DNA double-strand break 33.7 15 0.00051 34.5 1.7 15 181-195 26-40 (339)
474 2zu0_C Probable ATP-dependent 33.3 22 0.00075 32.2 2.7 44 307-358 181-224 (267)
475 2grj_A Dephospho-COA kinase; T 33.3 16 0.00054 31.4 1.6 17 180-196 14-30 (192)
476 2og2_A Putative signal recogni 33.2 18 0.00063 34.5 2.2 20 178-197 157-176 (359)
477 1y89_A DEVB protein; structura 33.1 41 0.0014 29.8 4.4 62 238-317 4-70 (238)
478 2qi9_C Vitamin B12 import ATP- 32.9 20 0.00069 32.2 2.3 21 177-197 25-45 (249)
479 2ixe_A Antigen peptide transpo 32.9 20 0.00068 32.6 2.3 45 306-357 172-216 (271)
480 1vpl_A ABC transporter, ATP-bi 32.7 20 0.00069 32.3 2.3 45 306-358 162-206 (256)
481 4a4z_A Antiviral helicase SKI2 32.3 1.3E+02 0.0043 32.9 8.9 77 235-318 337-452 (997)
482 2vp4_A Deoxynucleoside kinase; 32.2 16 0.00056 32.0 1.6 18 177-194 19-36 (230)
483 1odf_A YGR205W, hypothetical 3 32.1 19 0.00064 33.2 2.0 16 180-195 33-48 (290)
484 1np6_A Molybdopterin-guanine d 32.0 18 0.00061 30.5 1.7 15 180-194 8-22 (174)
485 1xjc_A MOBB protein homolog; s 32.0 17 0.00059 30.6 1.6 15 180-194 6-20 (169)
486 1ypw_A Transitional endoplasmi 31.9 15 0.00052 39.1 1.5 20 176-195 236-255 (806)
487 2olj_A Amino acid ABC transpor 31.7 21 0.00074 32.3 2.3 21 177-197 49-69 (263)
488 2ihy_A ABC transporter, ATP-bi 31.6 22 0.00074 32.6 2.3 32 306-337 177-208 (279)
489 3nh6_A ATP-binding cassette SU 31.3 14 0.00047 34.5 1.0 41 307-356 207-247 (306)
490 1ltq_A Polynucleotide kinase; 31.2 18 0.0006 33.0 1.7 26 326-358 190-215 (301)
491 1zu4_A FTSY; GTPase, signal re 30.5 21 0.00072 33.4 2.1 20 177-196 104-123 (320)
492 3sop_A Neuronal-specific septi 30.5 18 0.00061 32.9 1.5 16 180-195 4-19 (270)
493 2qen_A Walker-type ATPase; unk 30.5 32 0.0011 31.6 3.4 37 311-356 131-173 (350)
494 1z5z_A Helicase of the SNF2/RA 30.4 2.2E+02 0.0075 25.4 9.0 76 234-318 112-193 (271)
495 3aez_A Pantothenate kinase; tr 30.3 18 0.00062 33.7 1.6 19 177-195 89-107 (312)
496 1pui_A ENGB, probable GTP-bind 30.3 18 0.00061 30.7 1.4 19 176-194 24-42 (210)
497 2f6r_A COA synthase, bifunctio 29.9 19 0.00064 32.9 1.6 17 179-195 76-92 (281)
498 1e69_A Chromosome segregation 29.8 22 0.00075 33.0 2.1 15 181-195 27-41 (322)
499 2bbs_A Cystic fibrosis transme 29.8 24 0.00082 32.5 2.3 26 306-331 175-200 (290)
500 1uj2_A Uridine-cytidine kinase 29.7 19 0.00066 32.0 1.6 16 180-195 24-39 (252)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.3e-41 Score=315.94 Aligned_cols=218 Identities=27% Similarity=0.397 Sum_probs=197.1
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhh
Q 014666 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214 (420)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~ 214 (420)
..+.++.+|.+++|++.++++|.++||..|+++|.++|+.++.|+|++++||||||||++|++|++.++....
T Consensus 23 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~------- 95 (242)
T 3fe2_A 23 NCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP------- 95 (242)
T ss_dssp CCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC-------
T ss_pred CCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc-------
Confidence 3456788999999999999999999999999999999999999999999999999999999999998553210
Q ss_pred hhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhH
Q 014666 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294 (420)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~ 294 (420)
......++++|||+||++||.|+++.++.+....++++..++||.....+...+..+++|+||||++
T Consensus 96 -------------~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 96 -------------FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp -------------CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred -------------ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 0112357889999999999999999999999999999999999999988888888889999999999
Q ss_pred HHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchh
Q 014666 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374 (420)
Q Consensus 295 L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~ 374 (420)
|.+++.++...+.++++|||||||+|++++|...+..|+..++ .++|+++||||+|+.+..+++.++++|..
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~--------~~~q~~~~SAT~~~~~~~~~~~~l~~~~~ 234 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR--------PDRQTLMWSATWPKEVRQLAEDFLKDYIH 234 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC--------SSCEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC--------ccceEEEEEeecCHHHHHHHHHHCCCCEE
Confidence 9999998888899999999999999999999999999999886 37899999999999999999999999988
Q ss_pred ccCCCe
Q 014666 375 DNAGKV 380 (420)
Q Consensus 375 ~~~~~~ 380 (420)
+.++..
T Consensus 235 i~~~~~ 240 (242)
T 3fe2_A 235 INIGAL 240 (242)
T ss_dssp EEECC-
T ss_pred EEecCC
Confidence 877654
No 2
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=319.88 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=182.0
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcC--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhh
Q 014666 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214 (420)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~ 214 (420)
.....+|.+++|++.++++|..+||..||++|..+||.++.| +|++++||||||||++|++|+++++..
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~--------- 158 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP--------- 158 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT---------
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc---------
Confidence 345678999999999999999999999999999999999987 999999999999999999999985421
Q ss_pred hhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeChh
Q 014666 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPS 293 (420)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~ 293 (420)
...++++|||+|||+||.|++..+..++.+. ++.+.+.+||...... ...+++|||||||
T Consensus 159 ----------------~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~ 219 (300)
T 3fmo_B 159 ----------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPG 219 (300)
T ss_dssp ----------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHH
T ss_pred ----------------cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHH
Confidence 2356789999999999999999999998764 6888888888765432 2567899999999
Q ss_pred HHHhchhc-CcccCCCceEEEecCcchhhc-cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc
Q 014666 294 EVLQHIED-RNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 294 ~L~~~l~~-~~~~l~~l~~lVlDEaD~~l~-~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
+|++++.+ +.+.++++++|||||||+|++ .+|...+..|+..++. ++|+++||||+++++..+++.++++
T Consensus 220 ~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~--------~~q~i~~SAT~~~~v~~~a~~~l~~ 291 (300)
T 3fmo_B 220 TVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR--------NCQMLLFSATFEDSVWKFAQKVVPD 291 (300)
T ss_dssp HHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT--------TCEEEEEESCCCHHHHHHHHHHSSS
T ss_pred HHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC--------CCEEEEEeccCCHHHHHHHHHHCCC
Confidence 99999976 567789999999999999998 6899999999988863 7899999999999999999999999
Q ss_pred chhccCC
Q 014666 372 LERDNAG 378 (420)
Q Consensus 372 ~~~~~~~ 378 (420)
|..+.+.
T Consensus 292 p~~i~~~ 298 (300)
T 3fmo_B 292 PNVIKLK 298 (300)
T ss_dssp CEEEEEC
T ss_pred CeEEEec
Confidence 9877653
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-39 Score=330.05 Aligned_cols=231 Identities=24% Similarity=0.400 Sum_probs=202.9
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhh
Q 014666 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLV 215 (420)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~ 215 (420)
.+.++.+|.+++|++.++++|..+||..|||+|.++||.++.|+|++++|+||||||++|++|++++++....
T Consensus 51 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~------- 123 (434)
T 2db3_A 51 VPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPH------- 123 (434)
T ss_dssp CCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCC-------
T ss_pred CCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhccc-------
Confidence 4556889999999999999999999999999999999999999999999999999999999999996543210
Q ss_pred hhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH
Q 014666 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295 (420)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L 295 (420)
.....++++|||+|||+||.|++..+..++...++++.+++||.....+...+..+++|+|||||+|
T Consensus 124 -------------~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l 190 (434)
T 2db3_A 124 -------------ELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRL 190 (434)
T ss_dssp -------------CCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred -------------ccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHH
Confidence 0123578999999999999999999999999889999999999999888888888999999999999
Q ss_pred HhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 296 ~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
++++.++.+.+.++++|||||||+|++++|..++..|+..+.. ..++|+++||||+|+.+..++..++.++..+
T Consensus 191 ~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~------~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i 264 (434)
T 2db3_A 191 LDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTM------RPEHQTLMFSATFPEEIQRMAGEFLKNYVFV 264 (434)
T ss_dssp HHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTS------CSSCEEEEEESCCCHHHHHHHHTTCSSCEEE
T ss_pred HHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCC------CCCceEEEEeccCCHHHHHHHHHhccCCEEE
Confidence 9999998888999999999999999999999999999987632 2478999999999999999999999999877
Q ss_pred cCCCeeeeeeecccceE
Q 014666 376 NAGKVTAMLLEMDQAEV 392 (420)
Q Consensus 376 ~~~~~~~~~~~v~~~~~ 392 (420)
.++........+.+...
T Consensus 265 ~~~~~~~~~~~i~~~~~ 281 (434)
T 2db3_A 265 AIGIVGGACSDVKQTIY 281 (434)
T ss_dssp EESSTTCCCTTEEEEEE
T ss_pred EeccccccccccceEEE
Confidence 66655544444444433
No 4
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=5.3e-40 Score=303.68 Aligned_cols=216 Identities=23% Similarity=0.329 Sum_probs=184.5
Q ss_pred CCCccccccccc-CCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhh
Q 014666 134 GSNAEVVSSFQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHL 212 (420)
Q Consensus 134 ~~~~~~~~~f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~ 212 (420)
...+.+..+|.+ +++++.++++|.++||..|+++|.++|+.+++|+|++++||||||||++|++|++..+......
T Consensus 12 ~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~--- 88 (228)
T 3iuy_A 12 RLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS--- 88 (228)
T ss_dssp CCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC--------
T ss_pred CcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch---
Confidence 344567788999 8999999999999999999999999999999999999999999999999999999865432110
Q ss_pred hhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeCh
Q 014666 213 QLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATP 292 (420)
Q Consensus 213 ~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 292 (420)
.....++++|||+||++||.|++..+..+. ..++++..++||.....+...+..+++|+||||
T Consensus 89 ----------------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp 151 (228)
T 3iuy_A 89 ----------------REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATP 151 (228)
T ss_dssp --------------------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECH
T ss_pred ----------------hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECH
Confidence 012357889999999999999999999986 458889999999888877777888899999999
Q ss_pred hHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcc
Q 014666 293 SEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372 (420)
Q Consensus 293 ~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~ 372 (420)
++|.+++..+.+.+.++++|||||||+|++++|...+..++..++ .++|+++||||+|+.+..++..++++|
T Consensus 152 ~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~--------~~~~~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 152 GRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR--------PDRQTVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp HHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC--------SSCEEEEEESCCCHHHHHHHHTTCSSC
T ss_pred HHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCC--------cCCeEEEEEeeCCHHHHHHHHHHCCCC
Confidence 999999998888899999999999999999999999999999886 378999999999999999999999999
Q ss_pred hhccC
Q 014666 373 ERDNA 377 (420)
Q Consensus 373 ~~~~~ 377 (420)
..+.+
T Consensus 224 ~~i~v 228 (228)
T 3iuy_A 224 MIVYV 228 (228)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77643
No 5
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=305.03 Aligned_cols=209 Identities=25% Similarity=0.417 Sum_probs=189.9
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhh
Q 014666 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVG 216 (420)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~ 216 (420)
.....+|.+++|++.++++|..+||..|+++|.++|+.+++|+|++++|+||||||++|++|+++.+..
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~----------- 107 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE----------- 107 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----------
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc-----------
Confidence 345678999999999999999999999999999999999999999999999999999999999985432
Q ss_pred hHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHH
Q 014666 217 ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL 296 (420)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~ 296 (420)
...++++|||+||++||.|+++.++.++...++++..++||.....+...+..+++|+|+||++|.
T Consensus 108 --------------~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 173 (249)
T 3ber_A 108 --------------TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLI 173 (249)
T ss_dssp --------------SCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHH
T ss_pred --------------CCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHH
Confidence 124578999999999999999999999998899999999999888877777888999999999999
Q ss_pred hchhc-CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 297 QHIED-RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 297 ~~l~~-~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
+++.+ +.+.+.++++|||||||+|++++|...+..|+..++ .++|+++||||+++.+.++++.++.+|..+
T Consensus 174 ~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~--------~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i 245 (249)
T 3ber_A 174 DHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIP--------RDRKTFLFSATMTKKVQKLQRAALKNPVKC 245 (249)
T ss_dssp HHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSC--------SSSEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred HHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCC--------CCCeEEEEeccCCHHHHHHHHHHCCCCEEE
Confidence 99986 556789999999999999999999999999998886 378999999999999999999999999877
Q ss_pred cCC
Q 014666 376 NAG 378 (420)
Q Consensus 376 ~~~ 378 (420)
.++
T Consensus 246 ~v~ 248 (249)
T 3ber_A 246 AVS 248 (249)
T ss_dssp ECC
T ss_pred Eec
Confidence 654
No 6
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=5.3e-40 Score=308.55 Aligned_cols=231 Identities=26% Similarity=0.386 Sum_probs=192.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
++.+|.+|+|++.++++|..+||..|+++|.++|+.++.|+|++++||||||||++|++|+++.+.......
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~-------- 92 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQ-------- 92 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC----------
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhcccc--------
Confidence 567899999999999999999999999999999999999999999999999999999999998654321100
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
.......++++|||+||++||.|++..+..++...++++..++||.....+...+..+++|+||||++|.++
T Consensus 93 --------~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~ 164 (253)
T 1wrb_A 93 --------QRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDF 164 (253)
T ss_dssp ------------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHH
T ss_pred --------ccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHH
Confidence 000123467999999999999999999999998889999999999988888888888899999999999999
Q ss_pred hhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 299 l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
+.++.+.+.++++|||||||+|++++|+.++..|+..+.. +.+.++|+++||||+++++..+++.++.+|..+.++
T Consensus 165 l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~----~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 165 IEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNM----PSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp HHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCC----CCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred HHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccC----CCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 9988888999999999999999999999999999986532 111268999999999999999999999999888777
Q ss_pred Ceeeeeeeccc
Q 014666 379 KVTAMLLEMDQ 389 (420)
Q Consensus 379 ~~~~~~~~v~~ 389 (420)
........|.|
T Consensus 241 ~~~~~~~~i~q 251 (253)
T 1wrb_A 241 RVGSTSDSIKQ 251 (253)
T ss_dssp -----------
T ss_pred CCCCCcCCcee
Confidence 66655555544
No 7
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.1e-39 Score=300.61 Aligned_cols=210 Identities=25% Similarity=0.347 Sum_probs=178.0
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhh
Q 014666 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLV 215 (420)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~ 215 (420)
.+.+..+|++++|++.++++|..+||..|+++|.++|+.+++|+|++++||||||||++|++|+++.+..
T Consensus 25 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~---------- 94 (237)
T 3bor_A 25 WNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI---------- 94 (237)
T ss_dssp --CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT----------
T ss_pred CCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh----------
Confidence 3445678999999999999999999999999999999999999999999999999999999999984421
Q ss_pred hhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCC-CcEEEeChhH
Q 014666 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAP-IGMLIATPSE 294 (420)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~-~~IlV~TP~~ 294 (420)
...++++|||+||++|+.|++..+..++...++.+..++||.....+...+..+ ++|+|+||++
T Consensus 95 ---------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~ 159 (237)
T 3bor_A 95 ---------------EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGR 159 (237)
T ss_dssp ---------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHH
T ss_pred ---------------cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHH
Confidence 124678999999999999999999999988889999999998876666666555 8999999999
Q ss_pred HHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchh
Q 014666 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374 (420)
Q Consensus 295 L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~ 374 (420)
|++++.++.+.+.++++|||||||+|++++|...+..++..++ .++|+++||||+++++..+++.++++|..
T Consensus 160 l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~l~~p~~ 231 (237)
T 3bor_A 160 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN--------TSIQVVLLSATMPTDVLEVTKKFMRDPIR 231 (237)
T ss_dssp HHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC--------TTCEEEEECSSCCHHHHHHHHHHCSSCEE
T ss_pred HHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCC--------CCCeEEEEEEecCHHHHHHHHHHCCCCEE
Confidence 9999998888899999999999999999999999999998886 37899999999999999999999999987
Q ss_pred ccCC
Q 014666 375 DNAG 378 (420)
Q Consensus 375 ~~~~ 378 (420)
+.++
T Consensus 232 i~v~ 235 (237)
T 3bor_A 232 ILVK 235 (237)
T ss_dssp EC--
T ss_pred EEec
Confidence 7654
No 8
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=3.2e-39 Score=296.67 Aligned_cols=206 Identities=26% Similarity=0.392 Sum_probs=185.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
..+|++++|++.++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+..
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~-------------- 68 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP-------------- 68 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT--------------
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh--------------
Confidence 457999999999999999999999999999999999999999999999999999999999984421
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC----CCceecccCCCChHHHHHHhcCCCcEEEeChhHH
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA----RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~----~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L 295 (420)
...++++|||+||++||.|+++.+..+.... ++.+..++||.....+...+..+++|+|+||++|
T Consensus 69 -----------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l 137 (219)
T 1q0u_A 69 -----------ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRI 137 (219)
T ss_dssp -----------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHH
T ss_pred -----------CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHH
Confidence 1246789999999999999999999998776 7888899999887766666667899999999999
Q ss_pred HhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 296 ~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
.+++.++.+.+.++++|||||||++++++|...+..++..++ .++|+++||||+++++.++++.++.+|..+
T Consensus 138 ~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~--------~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~ 209 (219)
T 1q0u_A 138 NDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP--------KDLQMLVFSATIPEKLKPFLKKYMENPTFV 209 (219)
T ss_dssp HHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC--------TTCEEEEEESCCCGGGHHHHHHHCSSCEEE
T ss_pred HHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC--------cccEEEEEecCCCHHHHHHHHHHcCCCeEE
Confidence 999998888889999999999999999999999999999886 378999999999999999999999999776
Q ss_pred cCC
Q 014666 376 NAG 378 (420)
Q Consensus 376 ~~~ 378 (420)
.+.
T Consensus 210 ~~~ 212 (219)
T 1q0u_A 210 HVL 212 (219)
T ss_dssp ECC
T ss_pred Eee
Confidence 554
No 9
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.2e-38 Score=287.84 Aligned_cols=202 Identities=26% Similarity=0.363 Sum_probs=184.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
.+|++++|++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~--------------- 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL--------------- 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---------------
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc---------------
Confidence 46999999999999999999999999999999999999999999999999999999999984321
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhch
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
...++++||++||++|+.|+++.+..+.... ++++..++|+.....+...+..+++|+|+||++|.+++
T Consensus 68 ----------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~ 137 (206)
T 1vec_A 68 ----------KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI 137 (206)
T ss_dssp ----------TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHH
T ss_pred ----------cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHH
Confidence 2246789999999999999999999998776 78899999999888877778888999999999999999
Q ss_pred hcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
.++...+.++++|||||||+|++.+|...+..++..++. +.|+++||||+++.+..+++.++.+|..+
T Consensus 138 ~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~--------~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 138 KKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK--------NRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT--------TCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc--------cceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 988888999999999999999999999999999998863 78999999999999999999999998654
No 10
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=296.03 Aligned_cols=214 Identities=24% Similarity=0.381 Sum_probs=186.9
Q ss_pred CCcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhh
Q 014666 135 SNAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQL 214 (420)
Q Consensus 135 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~ 214 (420)
.......+|++++|++.++++|..+||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+.+...
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~------ 92 (236)
T 2pl3_A 19 INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW------ 92 (236)
T ss_dssp CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC------
T ss_pred CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc------
Confidence 34456778999999999999999999999999999999999999999999999999999999999986543210
Q ss_pred hhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhH
Q 014666 215 VGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294 (420)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~ 294 (420)
....++++|||+||++||.|++..+..++...++++..++||.....+...+ .+++|+|+||++
T Consensus 93 ---------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~ 156 (236)
T 2pl3_A 93 ---------------TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGR 156 (236)
T ss_dssp ---------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHH
T ss_pred ---------------cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHH
Confidence 1124678999999999999999999999988889999999998877666555 468999999999
Q ss_pred HHhchhcC-cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcch
Q 014666 295 VLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373 (420)
Q Consensus 295 L~~~l~~~-~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~ 373 (420)
|.+++.+. .+.+.++++|||||||+|++++|...+..++..++. ++|+++||||+++.+..+++.++.+|.
T Consensus 157 l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~--------~~~~l~~SAT~~~~~~~~~~~~~~~p~ 228 (236)
T 2pl3_A 157 LLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK--------KRQTLLFSATQTKSVKDLARLSLKNPE 228 (236)
T ss_dssp HHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT--------TSEEEEEESSCCHHHHHHHHHSCSSCE
T ss_pred HHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC--------CCeEEEEEeeCCHHHHHHHHHhCCCCE
Confidence 99998764 567889999999999999999999999999998863 789999999999999999999999998
Q ss_pred hccCC
Q 014666 374 RDNAG 378 (420)
Q Consensus 374 ~~~~~ 378 (420)
.+.++
T Consensus 229 ~i~~~ 233 (236)
T 2pl3_A 229 YVWVH 233 (236)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 77654
No 11
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=8.8e-39 Score=296.18 Aligned_cols=208 Identities=23% Similarity=0.283 Sum_probs=183.4
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhh
Q 014666 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLV 215 (420)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~ 215 (420)
.+....+|++++|++.++++|..+||..|+++|.++|+.+++|+|+++++|||+|||++|++|++..+..
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~---------- 88 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL---------- 88 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT----------
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh----------
Confidence 3445678999999999999999999999999999999999999999999999999999999999984421
Q ss_pred hhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeChhH
Q 014666 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294 (420)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~ 294 (420)
...++++|||+||++|+.|+++.+..++... ++++..++||.....+...+. +++|+|+||++
T Consensus 89 ---------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~ 152 (230)
T 2oxc_A 89 ---------------ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGR 152 (230)
T ss_dssp ---------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHH
T ss_pred ---------------cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHH
Confidence 1246789999999999999999999998665 889999999988877666554 68999999999
Q ss_pred HHhchhcCcccCCCceEEEecCcchhhccC-CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcch
Q 014666 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLE 373 (420)
Q Consensus 295 L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~-~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~ 373 (420)
|.+++..+.+.+.++++|||||||+|+++| |...+..|+..++. .+|+++||||+++++..++..++.+|.
T Consensus 153 l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~--------~~~~l~lSAT~~~~~~~~~~~~~~~p~ 224 (230)
T 2oxc_A 153 IKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA--------SKQMLAVSATYPEFLANALTKYMRDPT 224 (230)
T ss_dssp HHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS--------SCEEEEEESCCCHHHHHHHTTTCSSCE
T ss_pred HHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC--------CCeEEEEEeccCHHHHHHHHHHcCCCe
Confidence 999998888888999999999999999998 99999999998863 789999999999999999999999997
Q ss_pred hccC
Q 014666 374 RDNA 377 (420)
Q Consensus 374 ~~~~ 377 (420)
.+.+
T Consensus 225 ~i~~ 228 (230)
T 2oxc_A 225 FVRL 228 (230)
T ss_dssp EECC
T ss_pred EEEc
Confidence 7654
No 12
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.5e-38 Score=290.41 Aligned_cols=208 Identities=25% Similarity=0.354 Sum_probs=179.1
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhh
Q 014666 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGI 217 (420)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~ 217 (420)
....+|.+++|++.+++.|..+||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+..
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~------------ 78 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------ 78 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT------------
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc------------
Confidence 45678999999999999999999999999999999999999999999999999999999999985421
Q ss_pred HhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHh
Q 014666 218 TQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297 (420)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ 297 (420)
...++++||++||++|+.|+++.+..+....++++..++||.....+...+.. ++|+|+||++|++
T Consensus 79 -------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~ 144 (224)
T 1qde_A 79 -------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFD 144 (224)
T ss_dssp -------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHH
T ss_pred -------------cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHH
Confidence 23467899999999999999999999998889999999999887666655554 8999999999999
Q ss_pred chhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccC
Q 014666 298 HIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 377 (420)
Q Consensus 298 ~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~ 377 (420)
++.++...+.++++|||||||++++++|...+..++..++ .++|+++||||+++++..+++.++.+|..+.+
T Consensus 145 ~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~--------~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~ 216 (224)
T 1qde_A 145 NIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP--------PTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216 (224)
T ss_dssp HHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC--------TTCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred HHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCC--------ccCeEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 9998888899999999999999999999999999998876 37899999999999999999999999987765
Q ss_pred CC
Q 014666 378 GK 379 (420)
Q Consensus 378 ~~ 379 (420)
..
T Consensus 217 ~~ 218 (224)
T 1qde_A 217 KK 218 (224)
T ss_dssp --
T ss_pred cC
Confidence 53
No 13
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=6.4e-38 Score=284.84 Aligned_cols=205 Identities=26% Similarity=0.371 Sum_probs=183.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHh
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQML 221 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l 221 (420)
+|++++|++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+...
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~--------------- 66 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPS--------------- 66 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC---------------
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhc---------------
Confidence 69999999999999999999999999999999999999999999999999999999999854321
Q ss_pred hhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhc
Q 014666 222 RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~ 301 (420)
.....++++||++||++|+.|+++.+..+... +++..++||.....+...+..+++|+|+||++|.+++.+
T Consensus 67 -------~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~ 137 (207)
T 2gxq_A 67 -------QERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ 137 (207)
T ss_dssp -------CCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred -------cccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc
Confidence 01235688999999999999999999998764 778888999887777777777899999999999999998
Q ss_pred CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 302 ~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
+.+.+.++++||+||||++++.+|...+..++..++ .++|+++||||+++++..+++.++.+|..+.++
T Consensus 138 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 138 GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP--------PSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC--------TTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred CCcchhhceEEEEEChhHhhccchHHHHHHHHHhCC--------ccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 888899999999999999999999999999998776 378999999999999999999999999876543
No 14
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.3e-38 Score=296.85 Aligned_cols=204 Identities=27% Similarity=0.413 Sum_probs=179.5
Q ss_pred ccccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhh
Q 014666 140 VSSFQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGI 217 (420)
Q Consensus 140 ~~~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~ 217 (420)
..+|.+|+ |++.++++|..+||..|+++|.++++.++.|+|++++||||||||++|++|+++.+.+...
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~--------- 121 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF--------- 121 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC---------
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc---------
Confidence 45688887 9999999999999999999999999999999999999999999999999999986543210
Q ss_pred HhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHh
Q 014666 218 TQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297 (420)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ 297 (420)
....++++|||+||++||.|++..++.+....++.+..++||.....+...+..+++|+||||++|.+
T Consensus 122 ------------~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~ 189 (262)
T 3ly5_A 122 ------------MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLD 189 (262)
T ss_dssp ------------CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred ------------cccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHH
Confidence 11246789999999999999999999999988999999999999888777777789999999999999
Q ss_pred chhcC-cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcc
Q 014666 298 HIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372 (420)
Q Consensus 298 ~l~~~-~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~ 372 (420)
++... .+.+.++++|||||||+|++++|...+..|+..++. .+|+++||||+++++..+++.+++++
T Consensus 190 ~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~--------~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 190 HMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT--------RRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS--------SSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC--------CCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 98765 467899999999999999999999999999999863 78999999999999999999988765
No 15
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6e-38 Score=293.06 Aligned_cols=214 Identities=21% Similarity=0.363 Sum_probs=182.3
Q ss_pred CcccccccccC----CCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhh
Q 014666 136 NAEVVSSFQEL----GLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHH 211 (420)
Q Consensus 136 ~~~~~~~f~~l----~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~ 211 (420)
.+.++.+|.++ +|++.++++|.++||..|+++|.++|+.+++|+|++++||||||||++|++|+++.+.+
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~------ 93 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ------ 93 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS------
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh------
Confidence 44566788887 89999999999999999999999999999999999999999999999999999985421
Q ss_pred hhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHH-HHHhcCCCcEEEe
Q 014666 212 LQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKAL-EDVSNAPIGMLIA 290 (420)
Q Consensus 212 ~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~-~~~l~~~~~IlV~ 290 (420)
....++++|||+||++||.|+++.+..+....++++..+.|+...... ......+++|+||
T Consensus 94 ------------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~ 155 (245)
T 3dkp_A 94 ------------------PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVT 155 (245)
T ss_dssp ------------------CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEE
T ss_pred ------------------cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEE
Confidence 123567899999999999999999999999889988888776543322 1233567899999
Q ss_pred ChhHHHhchhcC--cccCCCceEEEecCcchhhc---cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHH
Q 014666 291 TPSEVLQHIEDR--NVSCDDIRYVVLDEADTLFD---RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 365 (420)
Q Consensus 291 TP~~L~~~l~~~--~~~l~~l~~lVlDEaD~~l~---~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~ 365 (420)
||++|.+++.+. .+.+.++++|||||||+|++ .+|...+..++..+.. .+.|+++||||+++++..++
T Consensus 156 Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~SAT~~~~v~~~~ 228 (245)
T 3dkp_A 156 TPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS-------HKVRRAMFSATFAYDVEQWC 228 (245)
T ss_dssp CHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-------TTCEEEEEESSCCHHHHHHH
T ss_pred CHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC-------CCcEEEEEeccCCHHHHHHH
Confidence 999999999876 46789999999999999998 5788888888876643 47899999999999999999
Q ss_pred HHHhhcchhccCCCe
Q 014666 366 SSLMECLERDNAGKV 380 (420)
Q Consensus 366 ~~~~~~~~~~~~~~~ 380 (420)
+.++++|..+.++..
T Consensus 229 ~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 229 KLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHSSSCEEEEECC-
T ss_pred HHhCCCCEEEEeCCC
Confidence 999999988877653
No 16
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.8e-37 Score=282.15 Aligned_cols=204 Identities=23% Similarity=0.327 Sum_probs=180.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
..+|++++|++.++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+..
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~-------------- 78 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 78 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--------------
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc--------------
Confidence 457999999999999999999999999999999999999999999999999999999999984311
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcC-CCcEEEeChhHHHh
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNA-PIGMLIATPSEVLQ 297 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~TP~~L~~ 297 (420)
...++++|||+||++|+.|++..++.+.... ++++..++||.....+...+.. .++|+|+||++|..
T Consensus 79 -----------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~ 147 (220)
T 1t6n_A 79 -----------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA 147 (220)
T ss_dssp -----------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHH
T ss_pred -----------cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHH
Confidence 1235689999999999999999999998776 7899999999887766665543 57999999999999
Q ss_pred chhcCcccCCCceEEEecCcchhhc-cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhcc
Q 014666 298 HIEDRNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376 (420)
Q Consensus 298 ~l~~~~~~l~~l~~lVlDEaD~~l~-~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~ 376 (420)
++.++.+.+.++++|||||||++++ .+|...+..++..++ .++|+++||||+++++..+++.++.+|..+.
T Consensus 148 ~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 148 LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC--------SSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC--------CcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9998888899999999999999997 478888888888765 3789999999999999999999999997653
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=297.32 Aligned_cols=244 Identities=21% Similarity=0.310 Sum_probs=197.7
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhh
Q 014666 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLV 215 (420)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~ 215 (420)
.+.++.+|++++|++.++++|..+||..|||+|.++|+.++.|+|++++||||||||++|++|+++.+.........
T Consensus 10 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~--- 86 (417)
T 2i4i_A 10 CPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEAL--- 86 (417)
T ss_dssp CCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHH---
T ss_pred CCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchh---
Confidence 34567789999999999999999999999999999999999999999999999999999999999976543211000
Q ss_pred hhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH
Q 014666 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295 (420)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L 295 (420)
..+.... .......++++|||+||++||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|
T Consensus 87 ---~~~~~~~-~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 87 ---RAMKENG-RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp ---HHHHHCB-TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred ---hcccccc-ccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 0111110 011123457899999999999999999999998889999999999998888888888899999999999
Q ss_pred HhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 296 ~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
.+++..+.+.+.++++|||||||++++++|...+..++..+.. +.....|+++||||++..+..++..++.++..+
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~----~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTM----PPKGVRHTMMFSATFPKEIQMLARDFLDEYIFL 238 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSC----CCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccC----CCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEE
Confidence 9999988888999999999999999999999999999875322 111368999999999999999999999988766
Q ss_pred cCCCeeeeeeecccc
Q 014666 376 NAGKVTAMLLEMDQA 390 (420)
Q Consensus 376 ~~~~~~~~~~~v~~~ 390 (420)
.++........+.+.
T Consensus 239 ~~~~~~~~~~~i~~~ 253 (417)
T 2i4i_A 239 AVGRVGSTSENITQK 253 (417)
T ss_dssp EEC----CCSSEEEE
T ss_pred EeCCCCCCccCceEE
Confidence 555444333344443
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.8e-35 Score=293.03 Aligned_cols=207 Identities=23% Similarity=0.357 Sum_probs=187.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
...+|++++|++.++++|..+||..|+|+|.++|+.++.|+|++++++||||||++|++|+++.+.
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~-------------- 100 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLD-------------- 100 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCC--------------
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHh--------------
Confidence 456799999999999999999999999999999999999999999999999999999999998431
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
....++++|||+||++||.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.++
T Consensus 101 -----------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~ 169 (410)
T 2j0s_A 101 -----------IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDM 169 (410)
T ss_dssp -----------TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred -----------hccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHH
Confidence 122467899999999999999999999999999999999999998888888878899999999999999
Q ss_pred hhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccCC
Q 014666 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 299 l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~ 378 (420)
+.++.+.+.++++|||||||+|++++|...+..++..++ ...|++++|||+++.+..++..++.+|..+.+.
T Consensus 170 l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 241 (410)
T 2j0s_A 170 IRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP--------PATQVVLISATLPHEILEMTNKFMTDPIRILVK 241 (410)
T ss_dssp HHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC--------TTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred HHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc--------cCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec
Confidence 998888899999999999999999999999999998876 378999999999999998888888888665443
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=280.87 Aligned_cols=210 Identities=25% Similarity=0.359 Sum_probs=188.4
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhh
Q 014666 137 AEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVG 216 (420)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~ 216 (420)
.....+|.++++++.+++.|..+||..|+++|.++|+.++.|+|++++++||||||++|++|+++.+..
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----------- 104 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL----------- 104 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT-----------
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh-----------
Confidence 345678999999999999999999999999999999999999999999999999999999999984421
Q ss_pred hHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhc-CCCcEEEeChhHH
Q 014666 217 ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN-APIGMLIATPSEV 295 (420)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~-~~~~IlV~TP~~L 295 (420)
...+.++|||+||++|+.|+++.+..++...++.+..++||.....+...+. .+++|+|+||++|
T Consensus 105 --------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l 170 (414)
T 3eiq_A 105 --------------DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 170 (414)
T ss_dssp --------------TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHH
T ss_pred --------------cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHH
Confidence 2246789999999999999999999999999999999999998877666655 6789999999999
Q ss_pred HhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 296 LQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 296 ~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
++++.++.+.+.++++|||||||++++.+|...+..++..++ .+.|+++||||++..+..++..++.++..+
T Consensus 171 ~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 242 (414)
T 3eiq_A 171 FDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN--------SNTQVVLLSATMPSDVLEVTKKFMRDPIRI 242 (414)
T ss_dssp HHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC--------TTCEEEEECSCCCHHHHHHHTTTCSSCEEE
T ss_pred HHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCC--------CCCeEEEEEEecCHHHHHHHHHHcCCCEEE
Confidence 999998888899999999999999999999999999998886 378999999999999999999999988766
Q ss_pred cCCC
Q 014666 376 NAGK 379 (420)
Q Consensus 376 ~~~~ 379 (420)
.+..
T Consensus 243 ~~~~ 246 (414)
T 3eiq_A 243 LVKK 246 (414)
T ss_dssp CCCC
T ss_pred EecC
Confidence 5443
No 20
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.4e-33 Score=290.46 Aligned_cols=212 Identities=23% Similarity=0.312 Sum_probs=177.6
Q ss_pred ccccCC----CCHHHHHHHHHCCCCCCcHHHHhhHHHHh--cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhh
Q 014666 142 SFQELG----LKAEMIKAVEKMGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLV 215 (420)
Q Consensus 142 ~f~~l~----l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~--~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~ 215 (420)
+|.+|. |++.++++|..+||..|+|+|.++|+.++ .|+|++++||||+|||++|++|+++.+.....
T Consensus 18 ~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~------- 90 (579)
T 3sqw_A 18 TLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF------- 90 (579)
T ss_dssp CHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-------
T ss_pred CHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-------
Confidence 455543 99999999999999999999999999999 78999999999999999999999986543210
Q ss_pred hhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhc----cCCCceecccCCCChHHHHHHh-cCCCcEEEe
Q 014666 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH----CARLDSSMENGGVSSKALEDVS-NAPIGMLIA 290 (420)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~----~~~i~~~~~~gg~~~~~~~~~l-~~~~~IlV~ 290 (420)
....++++|||+||++||.|++..+..+.. ...+.+..++||.....+...+ ..+++|+||
T Consensus 91 --------------~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~ 156 (579)
T 3sqw_A 91 --------------DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIA 156 (579)
T ss_dssp --------------SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEE
T ss_pred --------------cccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEE
Confidence 123467899999999999999999998863 3456788889998877766655 347899999
Q ss_pred ChhHHHhchhcC-cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHh
Q 014666 291 TPSEVLQHIEDR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369 (420)
Q Consensus 291 TP~~L~~~l~~~-~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~ 369 (420)
||++|.+++.+. ...+..+++|||||||+|++++|...+..|+..++.... ....++|+++||||+++.+..++..++
T Consensus 157 Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~-~~~~~~~~l~~SAT~~~~v~~~~~~~l 235 (579)
T 3sqw_A 157 TPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-KSADNIKTLLFSATLDDKVQKLANNIM 235 (579)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS-SCTTCCEEEEEESSCCTHHHHHTTTTC
T ss_pred CHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhc-ccccCceEEEEeccCChHHHHHHHHHc
Confidence 999999999875 456889999999999999999999999999998875332 122378999999999999999999999
Q ss_pred hcchhc
Q 014666 370 ECLERD 375 (420)
Q Consensus 370 ~~~~~~ 375 (420)
.++..+
T Consensus 236 ~~~~~~ 241 (579)
T 3sqw_A 236 NKKECL 241 (579)
T ss_dssp CSSEEE
T ss_pred CCCceE
Confidence 887554
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.6e-33 Score=284.90 Aligned_cols=219 Identities=24% Similarity=0.299 Sum_probs=176.1
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcC--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhh
Q 014666 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLV 215 (420)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~ 215 (420)
....+|.+++|++.++++|..+||..|||+|..+|+.++.| +|++++|+||||||++|++|+++.+..
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~---------- 158 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---------- 158 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT----------
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh----------
Confidence 34678999999999999999999999999999999999987 999999999999999999999984421
Q ss_pred hhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeChhH
Q 014666 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATPSE 294 (420)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~ 294 (420)
...++++|||+||++||.|++..+..+.... ++.+....++...... ...+++|+||||++
T Consensus 159 ---------------~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~ 220 (479)
T 3fmp_B 159 ---------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGT 220 (479)
T ss_dssp ---------------TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHH
T ss_pred ---------------cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchH
Confidence 2346789999999999999999999988754 5777777777654322 23467999999999
Q ss_pred HHhchhc-CcccCCCceEEEecCcchhhc-cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcc
Q 014666 295 VLQHIED-RNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372 (420)
Q Consensus 295 L~~~l~~-~~~~l~~l~~lVlDEaD~~l~-~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~ 372 (420)
|++++.+ +.+.+.++++|||||||+|++ .+|...+..++..++ .++|+++||||++..+..++..++.+|
T Consensus 221 l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~ 292 (479)
T 3fmp_B 221 VLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------RNCQMLLFSATFEDSVWKFAQKVVPDP 292 (479)
T ss_dssp HHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC--------TTSEEEEEESCCCHHHHHHHHHHSSSE
T ss_pred HHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC--------ccceEEEEeCCCCHHHHHHHHHHcCCC
Confidence 9999966 566789999999999999997 578888888887776 378999999999999999999999998
Q ss_pred hhccCCCeeeeeeecccceE
Q 014666 373 ERDNAGKVTAMLLEMDQAEV 392 (420)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~ 392 (420)
..+.+.........+.+..+
T Consensus 293 ~~i~~~~~~~~~~~~~~~~~ 312 (479)
T 3fmp_B 293 NVIKLKREEETLDTIKQYYV 312 (479)
T ss_dssp EEEEEC--------------
T ss_pred eEEeccccccCcCCceEEEE
Confidence 77766555444444444433
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-32 Score=272.08 Aligned_cols=207 Identities=22% Similarity=0.329 Sum_probs=179.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
..+|++++|++.++++|..+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++..+..
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-------------- 72 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP-------------- 72 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC--------------
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc--------------
Confidence 357999999999999999999999999999999999999999999999999999999999984321
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcC-CCcEEEeChhHHHh
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNA-PIGMLIATPSEVLQ 297 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~-~~~IlV~TP~~L~~ 297 (420)
...++++||++||++|+.|++..+..+.... ++++..++||.....+...+.. .++|+|+||++|..
T Consensus 73 -----------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~ 141 (391)
T 1xti_A 73 -----------VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA 141 (391)
T ss_dssp -----------CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHH
T ss_pred -----------cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHH
Confidence 2245789999999999999999999998766 7899999999887766655543 47999999999999
Q ss_pred chhcCcccCCCceEEEecCcchhhcc-CCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhcc
Q 014666 298 HIEDRNVSCDDIRYVVLDEADTLFDR-GFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376 (420)
Q Consensus 298 ~l~~~~~~l~~l~~lVlDEaD~~l~~-~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~ 376 (420)
++..+.+.+.++++|||||||++++. +|...+..++..++ ...|++++|||+++.+..++..++.+|..+.
T Consensus 142 ~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 213 (391)
T 1xti_A 142 LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--------HEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 213 (391)
T ss_dssp HHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC--------SSSEEEEEESSCCSTHHHHHHHHCSSCEEEE
T ss_pred HHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCC--------CCceEEEEEeeCCHHHHHHHHHHcCCCeEEE
Confidence 99888888999999999999999874 67888888887665 3789999999999999999999999887665
Q ss_pred CCC
Q 014666 377 AGK 379 (420)
Q Consensus 377 ~~~ 379 (420)
+..
T Consensus 214 ~~~ 216 (391)
T 1xti_A 214 VDD 216 (391)
T ss_dssp CCC
T ss_pred ecC
Confidence 443
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.3e-32 Score=273.09 Aligned_cols=211 Identities=23% Similarity=0.301 Sum_probs=179.3
Q ss_pred CcccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcC--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhh
Q 014666 136 NAEVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQ 213 (420)
Q Consensus 136 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~ 213 (420)
+.....+|++++|++.++++|..+||..|+|+|.++|+.++.| +|++++||||+|||++|++|+++.+..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~-------- 91 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-------- 91 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT--------
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh--------
Confidence 3455778999999999999999999999999999999999987 999999999999999999999984421
Q ss_pred hhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccC-CCceecccCCCChHHHHHHhcCCCcEEEeCh
Q 014666 214 LVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCA-RLDSSMENGGVSSKALEDVSNAPIGMLIATP 292 (420)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~-~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP 292 (420)
...++++|||+||++||.|++..+..+.... ++.+....|+...... ...+++|+|+||
T Consensus 92 -----------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~ 151 (412)
T 3fht_A 92 -----------------ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTP 151 (412)
T ss_dssp -----------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECH
T ss_pred -----------------cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECc
Confidence 2346789999999999999999999987764 6778877777655322 245689999999
Q ss_pred hHHHhchhc-CcccCCCceEEEecCcchhhc-cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 293 SEVLQHIED-RNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 293 ~~L~~~l~~-~~~~l~~l~~lVlDEaD~~l~-~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
++|++++.+ +.+.+.++++|||||||++++ .+|...+..++..++ .++|++++|||+++.+..++..++.
T Consensus 152 ~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~ 223 (412)
T 3fht_A 152 GTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------RNCQMLLFSATFEDSVWKFAQKVVP 223 (412)
T ss_dssp HHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC--------TTCEEEEEESCCCHHHHHHHHHHSS
T ss_pred hHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC--------CCceEEEEEeecCHHHHHHHHHhcC
Confidence 999999966 566788999999999999997 678888888888776 3789999999999999999999999
Q ss_pred cchhccCCCeee
Q 014666 371 CLERDNAGKVTA 382 (420)
Q Consensus 371 ~~~~~~~~~~~~ 382 (420)
++..+.+.....
T Consensus 224 ~~~~~~~~~~~~ 235 (412)
T 3fht_A 224 DPNVIKLKREEE 235 (412)
T ss_dssp SCEEECCCGGGS
T ss_pred CCeEEeeccccc
Confidence 987765544433
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7.2e-33 Score=275.10 Aligned_cols=205 Identities=25% Similarity=0.353 Sum_probs=183.7
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
...+|++++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||+|||++|++|+++.+..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~------------- 85 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT------------- 85 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT-------------
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc-------------
Confidence 4567999999999999999999999999999999999999999999999999999999999984421
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
...++++|||+||++|+.|+++.+..+....++++..++|+.........+. +++|+|+||++|++.
T Consensus 86 ------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~ 152 (394)
T 1fuu_A 86 ------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDN 152 (394)
T ss_dssp ------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHH
T ss_pred ------------cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHH
Confidence 2246789999999999999999999999888999999999988776655554 589999999999999
Q ss_pred hhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhccC
Q 014666 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNA 377 (420)
Q Consensus 299 l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~ 377 (420)
+.++.+.+.++++||+||||++++.+|...+..++..++ ...|++++|||+++.+..++..++.+|..+.+
T Consensus 153 ~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 223 (394)
T 1fuu_A 153 IQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP--------PTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 223 (394)
T ss_dssp HHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC--------TTCEEEEECSSCCHHHHHHHHHHCCSCEEEEE
T ss_pred HHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCC--------CCceEEEEEEecCHHHHHHHHHhcCCCeEEEe
Confidence 998888889999999999999999999999999998886 37899999999999999999999988866543
No 25
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.5e-32 Score=270.44 Aligned_cols=204 Identities=23% Similarity=0.350 Sum_probs=182.2
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
...+|++++|++.++++|..+||..|+|+|.++++.++.|+|+++++|||+|||++|++|++..+..
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~------------- 85 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP------------- 85 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT-------------
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh-------------
Confidence 3567999999999999999999999999999999999999999999999999999999999984321
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
...++++|||+||++|+.|+++.+..+....++++...+|+.....+...+..+++|+|+||++|.++
T Consensus 86 ------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~ 153 (400)
T 1s2m_A 86 ------------KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDL 153 (400)
T ss_dssp ------------TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHH
T ss_pred ------------ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHH
Confidence 12456899999999999999999999998889999999999988877777778899999999999999
Q ss_pred hhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 299 l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
+.++...+.++++|||||||++++.+|...+..++..++ ...|++++|||++..+..++..++.++..+
T Consensus 154 ~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~--------~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~ 222 (400)
T 1s2m_A 154 ASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP--------PTHQSLLFSATFPLTVKEFMVKHLHKPYEI 222 (400)
T ss_dssp HHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC--------SSCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC--------cCceEEEEEecCCHHHHHHHHHHcCCCeEE
Confidence 988878899999999999999998888888888887765 378999999999999999999888887554
No 26
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-32 Score=285.01 Aligned_cols=206 Identities=23% Similarity=0.315 Sum_probs=173.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHHh--cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhc
Q 014666 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVL--NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDE 225 (420)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~--~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~ 225 (420)
|++.++++|..+||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+.....
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~----------------- 141 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----------------- 141 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-----------------
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-----------------
Confidence 99999999999999999999999999999 68999999999999999999999996543211
Q ss_pred ccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhcc----CCCceecccCCCChHHHHHHh-cCCCcEEEeChhHHHhchh
Q 014666 226 ALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHC----ARLDSSMENGGVSSKALEDVS-NAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 226 ~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~----~~i~~~~~~gg~~~~~~~~~l-~~~~~IlV~TP~~L~~~l~ 300 (420)
....++++|||+||++||.|++..+..+... ..+.+..++||.....+...+ ..+++|+||||++|.+++.
T Consensus 142 ----~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~ 217 (563)
T 3i5x_A 142 ----DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE 217 (563)
T ss_dssp ----SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred ----cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHH
Confidence 1224578999999999999999999987542 346688888998877666555 4478999999999999998
Q ss_pred cC-cccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 301 DR-NVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 301 ~~-~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
+. ...+.++++|||||||+|++++|...+..|+..++.... ....++|+++||||+++.+..++..++.++..+
T Consensus 218 ~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~-~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~ 292 (563)
T 3i5x_A 218 KYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNS-KSADNIKTLLFSATLDDKVQKLANNIMNKKECL 292 (563)
T ss_dssp HHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCS-SCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEE
T ss_pred hccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccc-cCccCceEEEEEccCCHHHHHHHHHhcCCCceE
Confidence 75 346889999999999999999999999999998875432 223478999999999999999999998887554
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.8e-32 Score=266.91 Aligned_cols=202 Identities=25% Similarity=0.411 Sum_probs=175.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcC--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhh
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVG 216 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~ 216 (420)
...+|++++|++.++++|..+||..|+|+|.++++.++.| +|++++||||+|||++|++|++..+..
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~----------- 71 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP----------- 71 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT-----------
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc-----------
Confidence 3578999999999999999999999999999999999988 999999999999999999999984421
Q ss_pred hHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHH
Q 014666 217 ITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVL 296 (420)
Q Consensus 217 ~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~ 296 (420)
...++++|||+||++|+.|++..+..++...++.+...+++..... ...+++|+|+||++|.
T Consensus 72 --------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~ 133 (395)
T 3pey_A 72 --------------EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVL 133 (395)
T ss_dssp --------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHH
T ss_pred --------------CCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHH
Confidence 2246789999999999999999999999888888888887764322 2336899999999999
Q ss_pred hchhcCcccCCCceEEEecCcchhhc-cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 297 QHIEDRNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 297 ~~l~~~~~~l~~l~~lVlDEaD~~l~-~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
+++.++...+.++++|||||||++++ .++...+..++..++ .+.|++++|||+++.+..++..++.++..+
T Consensus 134 ~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 205 (395)
T 3pey_A 134 DLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP--------KDTQLVLFSATFADAVRQYAKKIVPNANTL 205 (395)
T ss_dssp HHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC--------TTCEEEEEESCCCHHHHHHHHHHSCSCEEE
T ss_pred HHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC--------CCcEEEEEEecCCHHHHHHHHHhCCCCeEE
Confidence 99998888899999999999999998 578888888887775 378999999999999999999999887655
Q ss_pred cC
Q 014666 376 NA 377 (420)
Q Consensus 376 ~~ 377 (420)
..
T Consensus 206 ~~ 207 (395)
T 3pey_A 206 EL 207 (395)
T ss_dssp CC
T ss_pred Ec
Confidence 43
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=4.7e-31 Score=259.11 Aligned_cols=202 Identities=25% Similarity=0.387 Sum_probs=180.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcC-CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG-KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g-~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
..+|++++|++.++++|.++||..|+|+|.++++.+++| +++++++|||+|||++|++|++..+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~-------------- 70 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN-------------- 70 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC--------------
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhc--------------
Confidence 357999999999999999999999999999999999888 79999999999999999999988331
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
...++++||++||++|+.|+++.+..+....++.+..++||.....+...+. +++|+|+||++|.++
T Consensus 71 ------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~ 137 (367)
T 1hv8_A 71 ------------ENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDH 137 (367)
T ss_dssp ------------SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHH
T ss_pred ------------ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHH
Confidence 1246789999999999999999999998888899999999998776666555 589999999999999
Q ss_pred hhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhcc
Q 014666 299 IEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDN 376 (420)
Q Consensus 299 l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~ 376 (420)
+..+.+.+.++++||+||||.+.+.+|...+..++..++ .+.|++++|||++..+..++..++.++..+.
T Consensus 138 ~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~--------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 207 (367)
T 1hv8_A 138 INRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN--------KDKRILLFSATMPREILNLAKKYMGDYSFIK 207 (367)
T ss_dssp HHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC--------SSCEEEEECSSCCHHHHHHHHHHCCSEEEEE
T ss_pred HHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC--------CCceEEEEeeccCHHHHHHHHHHcCCCeEEE
Confidence 998888889999999999999999999999999988775 3789999999999999999999988876553
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.3e-30 Score=253.20 Aligned_cols=188 Identities=26% Similarity=0.391 Sum_probs=171.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhccc
Q 014666 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEAL 227 (420)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~ 227 (420)
|++.+.++|..+||..|+|+|.++++.+++|+++++++|||+|||++|++|++.
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~-------------------------- 54 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE-------------------------- 54 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH--------------------------
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh--------------------------
Confidence 678999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCC
Q 014666 228 LPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCD 307 (420)
Q Consensus 228 ~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~ 307 (420)
.+.++|||+||++|+.|++..+..++...++++..++|+.....+...+.. ++|+|+||++|.+++..+.+.+.
T Consensus 55 -----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~ 128 (337)
T 2z0m_A 55 -----LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLS 128 (337)
T ss_dssp -----HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGG
T ss_pred -----hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchh
Confidence 245799999999999999999999998889999999999888776666654 89999999999999988877889
Q ss_pred CceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchhc
Q 014666 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLERD 375 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~ 375 (420)
+++++|+||||++.+++|...+..++..++. ..|++++|||+++.+...+..++.++..+
T Consensus 129 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 188 (337)
T 2z0m_A 129 SFEIVIIDEADLMFEMGFIDDIKIILAQTSN--------RKITGLFSATIPEEIRKVVKDFITNYEEI 188 (337)
T ss_dssp GCSEEEEESHHHHHHTTCHHHHHHHHHHCTT--------CSEEEEEESCCCHHHHHHHHHHSCSCEEE
T ss_pred hCcEEEEEChHHhhccccHHHHHHHHhhCCc--------ccEEEEEeCcCCHHHHHHHHHhcCCceee
Confidence 9999999999999999999999999988763 78999999999999999999998877554
No 30
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.9e-30 Score=282.30 Aligned_cols=189 Identities=15% Similarity=0.183 Sum_probs=161.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
...|..+++++.+...+...++..|+++|..+|+.+..|+|+|++|+||||||++|++|++..+.
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------------- 225 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------------- 225 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---------------
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh---------------
Confidence 44688888888888887777777899999999999999999999999999999999999998431
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhch
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
.+.++||++||++||.|++..+..+.. .+++++|+... ..+++|+|+||++|++++
T Consensus 226 -------------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L 281 (1108)
T 3l9o_A 226 -------------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSML 281 (1108)
T ss_dssp -------------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHH
T ss_pred -------------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHH
Confidence 356899999999999999999998765 57778887763 355899999999999999
Q ss_pred hcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccch--HHHHHHHHhhcchhc
Q 014666 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM--LGEQLSSLMECLERD 375 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~--v~~~~~~~~~~~~~~ 375 (420)
.++...+.++++|||||||+|++++|+..+..++..++ ..+|+|+||||+|+. +..++..+...+..+
T Consensus 282 ~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~--------~~~qvl~lSATipn~~e~a~~l~~~~~~~~~v 351 (1108)
T 3l9o_A 282 YRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP--------DKVRYVFLSATIPNAMEFAEWICKIHSQPCHI 351 (1108)
T ss_dssp HHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC--------TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEE
T ss_pred HcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcC--------CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEE
Confidence 98887789999999999999999999999999999887 479999999999875 445666666555443
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=8.3e-29 Score=255.26 Aligned_cols=216 Identities=19% Similarity=0.290 Sum_probs=153.6
Q ss_pred ccccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcC--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhh
Q 014666 138 EVVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLV 215 (420)
Q Consensus 138 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~ 215 (420)
.....|...++++.+++.|...||..|+++|.++|+.+++| ++++++++||||||++|++|++..+..
T Consensus 116 ~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~---------- 185 (508)
T 3fho_A 116 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA---------- 185 (508)
T ss_dssp -----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT----------
T ss_pred cccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh----------
Confidence 34556777889999999999999999999999999999998 999999999999999999999984421
Q ss_pred hhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH
Q 014666 216 GITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV 295 (420)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L 295 (420)
...++++|||+||++|+.|++..+..+....++.+...+++..... ...+++|+||||++|
T Consensus 186 ---------------~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l 246 (508)
T 3fho_A 186 ---------------SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTV 246 (508)
T ss_dssp ---------------TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHH
T ss_pred ---------------CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHH
Confidence 2246789999999999999999999998877777777666554322 234689999999999
Q ss_pred HhchhcCcccCCCceEEEecCcchhhc-cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchh
Q 014666 296 LQHIEDRNVSCDDIRYVVLDEADTLFD-RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374 (420)
Q Consensus 296 ~~~l~~~~~~l~~l~~lVlDEaD~~l~-~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~ 374 (420)
++++.++.+.+.++++|||||||++.+ .++...+..++..++. +.|++++|||+++.+..+...++.++..
T Consensus 247 ~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~--------~~~~i~lSAT~~~~~~~~~~~~~~~~~~ 318 (508)
T 3fho_A 247 MDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR--------NTQIVLFSATFSERVEKYAERFAPNANE 318 (508)
T ss_dssp HHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCT--------TCEEEEEESCCSTHHHHHHHHHSTTCEE
T ss_pred HHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCc--------CCeEEEEeCCCCHHHHHHHHHhcCCCeE
Confidence 999998888899999999999999987 5799999999988863 7899999999999999999999998876
Q ss_pred ccCCCeeeeeeecccc
Q 014666 375 DNAGKVTAMLLEMDQA 390 (420)
Q Consensus 375 ~~~~~~~~~~~~v~~~ 390 (420)
+.+.........+.+.
T Consensus 319 i~~~~~~~~~~~~~~~ 334 (508)
T 3fho_A 319 IRLKTEELSVEGIKQL 334 (508)
T ss_dssp ECCCCCC----CCCCE
T ss_pred EEeccccCCcccceEE
Confidence 6554443333333333
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=3.1e-28 Score=244.31 Aligned_cols=180 Identities=15% Similarity=0.171 Sum_probs=146.4
Q ss_pred HHHHHHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCC
Q 014666 151 EMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLP 229 (420)
Q Consensus 151 ~l~~~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 229 (420)
.+.+.+.+ +|| .|||+|.++|+.+++|+|++++||||||||++|++|++..+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-------------------------- 61 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-------------------------- 61 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------------------------
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------------------------
Confidence 34455555 477 79999999999999999999999999999999999988722
Q ss_pred CCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCCh---HHHHHHhcCC-CcEEEeChhHHHhchhcCccc
Q 014666 230 MKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS---KALEDVSNAP-IGMLIATPSEVLQHIEDRNVS 305 (420)
Q Consensus 230 ~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IlV~TP~~L~~~l~~~~~~ 305 (420)
..++++|||+||++||.|++..+..++. .++++..++||... ..+...+..+ ++|+||||++|.+++.. +.
T Consensus 62 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~ 136 (414)
T 3oiy_A 62 --RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LS 136 (414)
T ss_dssp --TTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HT
T ss_pred --cCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hc
Confidence 1467899999999999999999999988 89999999999987 4455555555 99999999999999874 66
Q ss_pred CCCceEEEecCcch----------hhc-cCCHHH-HHHHHHHchhh---hcccCCCCceEEEEeec-ccchHH
Q 014666 306 CDDIRYVVLDEADT----------LFD-RGFGPE-ISKILNPLKDS---ALKSNGQGFQTILVTAA-IAEMLG 362 (420)
Q Consensus 306 l~~l~~lVlDEaD~----------~l~-~~~~~~-l~~Il~~l~~~---~~~~~~~~~Q~v~~SAT-l~~~v~ 362 (420)
+.++++|||||||+ |++ ++|..+ +..++..++.. ..-....++|+++|||| +|..+.
T Consensus 137 ~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 137 QKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 209 (414)
T ss_dssp TCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST
T ss_pred cccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhH
Confidence 78999999999964 555 889888 88899887610 00011147899999999 666655
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=1.9e-27 Score=248.62 Aligned_cols=188 Identities=18% Similarity=0.282 Sum_probs=155.3
Q ss_pred ccccCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 142 SFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
.+.++++++.+...|.. +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------------- 82 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------------- 82 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT-------------------
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH-------------------
Confidence 34568999999999998 7999999999999999999999999999999999999999986
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH------hcCCCcEEEeChhH
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV------SNAPIGMLIATPSE 294 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~------l~~~~~IlV~TP~~ 294 (420)
...++|||+|+++|+.|++..+..+ ++.+..+.|+......... ....++|+|+||++
T Consensus 83 ------------~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~ 146 (591)
T 2v1x_A 83 ------------SDGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEK 146 (591)
T ss_dssp ------------SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHH
T ss_pred ------------cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhH
Confidence 2458999999999999999998886 7888899998877654432 24568999999998
Q ss_pred HHh------chhcCcccCCCceEEEecCcchhhccC--CHHHHHH--HHHHchhhhcccCCCCceEEEEeecccchHHHH
Q 014666 295 VLQ------HIEDRNVSCDDIRYVVLDEADTLFDRG--FGPEISK--ILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 295 L~~------~l~~~~~~l~~l~~lVlDEaD~~l~~~--~~~~l~~--Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
|.. .+. ....+.++.+|||||||++.++| |.+.+.. ++.... ++.|+++||||+++.+...
T Consensus 147 L~~~~~~~~~l~-~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~--------~~~~ii~lSAT~~~~v~~~ 217 (591)
T 2v1x_A 147 IAKSKMFMSRLE-KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF--------PNASLIGLTATATNHVLTD 217 (591)
T ss_dssp HHSCHHHHHHHH-HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC--------TTSEEEEEESSCCHHHHHH
T ss_pred hhccHHHHHHHH-hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhC--------CCCcEEEEecCCCHHHHHH
Confidence 753 232 24457889999999999999988 7777654 222211 3789999999999999888
Q ss_pred HHHHhhcch
Q 014666 365 LSSLMECLE 373 (420)
Q Consensus 365 ~~~~~~~~~ 373 (420)
+..++..+.
T Consensus 218 i~~~l~~~~ 226 (591)
T 2v1x_A 218 AQKILCIEK 226 (591)
T ss_dssp HHHHTTCCS
T ss_pred HHHHhCCCC
Confidence 888887653
No 34
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.95 E-value=3.9e-27 Score=252.45 Aligned_cols=188 Identities=19% Similarity=0.251 Sum_probs=160.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHH-HhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
.+|++++|++.+.+.+..+||..|+|+|.++|+. +..|++++++||||||||++|.+++++.+..
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------------- 73 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------------- 73 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------------
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------------
Confidence 5699999999999999999999999999999998 7899999999999999999999999984421
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhch
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
.+.++||++|+|+||.|++..++.+.. .++++...+|+...... .+ ..++|+|+||++|..++
T Consensus 74 -------------~~~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~ 136 (715)
T 2va8_A 74 -------------NGGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLW 136 (715)
T ss_dssp -------------SCSEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHH
T ss_pred -------------CCCeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHH
Confidence 246899999999999999999965544 48899999988765432 22 36899999999999999
Q ss_pred hcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
.++...++++++|||||||.+.+.+++..++.++..++ ++|+|++|||+++ ...+.. |+.
T Consensus 137 ~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~---------~~~ii~lSATl~n-~~~~~~-~l~ 196 (715)
T 2va8_A 137 RHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK---------RRNLLALSATISN-YKQIAK-WLG 196 (715)
T ss_dssp HHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH---------TSEEEEEESCCTT-HHHHHH-HHT
T ss_pred hCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc---------cCcEEEEcCCCCC-HHHHHH-HhC
Confidence 88776789999999999999988889999999998886 6899999999986 344444 443
No 35
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.95 E-value=2e-27 Score=254.91 Aligned_cols=188 Identities=20% Similarity=0.231 Sum_probs=161.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHH-HhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhH
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPA-VLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQM 220 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~-i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~ 220 (420)
.|++++|++.+.+.+..+||..|+++|.++|+. +..|+|++++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------------- 66 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------------- 66 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH---------------
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh---------------
Confidence 599999999999999999999999999999998 8899999999999999999999999985431
Q ss_pred hhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchh
Q 014666 221 LRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 221 l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~ 300 (420)
.+.++||++|+++||.|++..+..+... ++++..++|+...... ....++|+|+||++|..++.
T Consensus 67 ------------~~~~~l~i~P~raLa~q~~~~~~~l~~~-g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~ 130 (720)
T 2zj8_A 67 ------------QGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLR 130 (720)
T ss_dssp ------------HCSEEEEECSSGGGHHHHHHHTGGGGGG-TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHH
T ss_pred ------------CCCEEEEEcCcHHHHHHHHHHHHHHHhc-CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHH
Confidence 1468999999999999999999766543 8899999997665432 12358999999999999988
Q ss_pred cCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 301 DRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 301 ~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
++...+.++++|||||||.+.+.+++..++.++..++. ++|+|++|||+++ ...+.. |+.
T Consensus 131 ~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~--------~~~ii~lSATl~n-~~~~~~-~l~ 190 (720)
T 2zj8_A 131 HGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG--------KAQIIGLSATIGN-PEELAE-WLN 190 (720)
T ss_dssp HTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT--------TBEEEEEECCCSC-HHHHHH-HTT
T ss_pred cChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc--------CCeEEEEcCCcCC-HHHHHH-HhC
Confidence 87666889999999999999988999999999998862 7899999999986 344444 443
No 36
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.95 E-value=5.2e-27 Score=260.13 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=145.5
Q ss_pred HCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.+|| .|||+|..+||.++.|+|++++||||||||++|++|++..+ ..++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~----------------------------~~~~~~ 124 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA----------------------------RKGKKS 124 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH----------------------------TTTCCE
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH----------------------------hcCCeE
Confidence 4788 69999999999999999999999999999999888887732 146789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCCh---HHHHHHhcCC-CcEEEeChhHHHhchhcCcccCCCceEEE
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS---KALEDVSNAP-IGMLIATPSEVLQHIEDRNVSCDDIRYVV 313 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~---~~~~~~l~~~-~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 313 (420)
|||+||++||.|++..+..++ ..++++..++||... ..+...+..+ ++|+||||++|++++.. +.+.++++||
T Consensus 125 Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lV 201 (1104)
T 4ddu_A 125 ALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVF 201 (1104)
T ss_dssp EEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEE
T ss_pred EEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEE
Confidence 999999999999999999988 778999999999987 5566666665 99999999999999874 6788999999
Q ss_pred ecCc----------chhhc-cCCHHH-HHHHHHHchhh---hcccCCCCceEEEEeec-ccchHHH
Q 014666 314 LDEA----------DTLFD-RGFGPE-ISKILNPLKDS---ALKSNGQGFQTILVTAA-IAEMLGE 363 (420)
Q Consensus 314 lDEa----------D~~l~-~~~~~~-l~~Il~~l~~~---~~~~~~~~~Q~v~~SAT-l~~~v~~ 363 (420)
|||| |+|++ +||..+ +..++..++.. ..-....+.|+++|||| .|..+..
T Consensus 202 iDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~ 267 (1104)
T 4ddu_A 202 VDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP 267 (1104)
T ss_dssp ESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTT
T ss_pred EeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHH
Confidence 9999 56677 899998 89999988610 00111147899999999 6666553
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=5.3e-27 Score=247.55 Aligned_cols=170 Identities=17% Similarity=0.220 Sum_probs=139.8
Q ss_pred HCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.+|| .||+||..++|.++.|+ |++++||+|||++|++|++... ..++.|
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~a----------------------------L~g~~v 127 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNA----------------------------LTGKGV 127 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHH----------------------------TTSSCE
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHH----------------------------HcCCCE
Confidence 5899 99999999999999999 9999999999999999998411 135679
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-Hhchhc------CcccCCCce
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIED------RNVSCDDIR 310 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~------~~~~l~~l~ 310 (420)
+||+|||+||.|++..+..+..++|+++++++||.+...+ ....+|+|+|||||+| .++|.. +.+.+..+.
T Consensus 128 lVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~ 205 (844)
T 1tf5_A 128 HVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLH 205 (844)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCC
Confidence 9999999999999999999999999999999999886543 3345799999999999 444432 346688999
Q ss_pred EEEecCcchhh-ccC---------------CHHHHHHHHHHchh-hhcccCCCCceEE-----------------EEeec
Q 014666 311 YVVLDEADTLF-DRG---------------FGPEISKILNPLKD-SALKSNGQGFQTI-----------------LVTAA 356 (420)
Q Consensus 311 ~lVlDEaD~~l-~~~---------------~~~~l~~Il~~l~~-~~~~~~~~~~Q~v-----------------~~SAT 356 (420)
++||||||.|| |++ |..++..|+..|+. .........+|++ +||||
T Consensus 206 ~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat 285 (844)
T 1tf5_A 206 FAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVK 285 (844)
T ss_dssp EEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGG
T ss_pred EEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCc
Confidence 99999999998 775 67889999988862 0111223467888 99999
Q ss_pred ccch
Q 014666 357 IAEM 360 (420)
Q Consensus 357 l~~~ 360 (420)
++..
T Consensus 286 ~~~~ 289 (844)
T 1tf5_A 286 HVAL 289 (844)
T ss_dssp GHHH
T ss_pred cchh
Confidence 8753
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.94 E-value=1.4e-27 Score=255.33 Aligned_cols=190 Identities=15% Similarity=0.220 Sum_probs=158.5
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHh
Q 014666 142 SFQELG--LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQ 219 (420)
Q Consensus 142 ~f~~l~--l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~ 219 (420)
+|++|+ |++.+.+.+..+||..|+|+|.++++.+.+|+|++++||||||||++|.+|+++.+.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~--------------- 66 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI--------------- 66 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH---------------
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH---------------
Confidence 588999 999999999999999999999999999999999999999999999999999998432
Q ss_pred HhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhch
Q 014666 220 MLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 220 ~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
.+.++||++|+++||.|++..++.+.. .++++..++|+...... ....++|+|+||++|..++
T Consensus 67 -------------~~~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l 129 (702)
T 2p6r_A 67 -------------KGGKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLI 129 (702)
T ss_dssp -------------TTCCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHH
T ss_pred -------------hCCcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHH
Confidence 145799999999999999999965543 48899999987655332 1236899999999999999
Q ss_pred hcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
.++...++++++|||||||.+.+.+++..++.++..+... +++.|+|++|||+++ ...+.. |+.
T Consensus 130 ~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~-----~~~~~ii~lSATl~n-~~~~~~-~l~ 193 (702)
T 2p6r_A 130 RNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM-----NKALRVIGLSATAPN-VTEIAE-WLD 193 (702)
T ss_dssp HTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH-----CTTCEEEEEECCCTT-HHHHHH-HTT
T ss_pred HcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc-----CcCceEEEECCCcCC-HHHHHH-HhC
Confidence 8876668999999999999999889999999999888642 247999999999986 455544 443
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=1.1e-26 Score=257.18 Aligned_cols=186 Identities=16% Similarity=0.148 Sum_probs=152.5
Q ss_pred HHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCC
Q 014666 156 VEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235 (420)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (420)
+..+||. | ++|.++|+.++.|+|++++||||||||+ |++|++..+.. .++
T Consensus 51 ~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~---------------------------~~~ 100 (1054)
T 1gku_B 51 RKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL---------------------------KGK 100 (1054)
T ss_dssp HTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT---------------------------TSC
T ss_pred HHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh---------------------------cCC
Confidence 3458999 9 9999999999999999999999999998 99999874321 357
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCC----ceecccCCCChHHH---HHHhcCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 236 RAIVLCTTEESADQGFHMAKFISHCARL----DSSMENGGVSSKAL---EDVSNAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~~~~~l~~~~~i----~~~~~~gg~~~~~~---~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
++|||+||++||.|++..+..++...++ ++.+++||.....+ ...+.. ++|+||||++|.+++.+ +++
T Consensus 101 ~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~ 175 (1054)
T 1gku_B 101 RCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGH 175 (1054)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCC
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hcc
Confidence 8999999999999999999999988888 89999999887663 344555 99999999999999876 679
Q ss_pred ceEEEecCcchhhccCCHHHHHHHHHHchhhhc---ccCCCCceEEEEeecccchHHHHHHHHhhcchhccCCC
Q 014666 309 IRYVVLDEADTLFDRGFGPEISKILNPLKDSAL---KSNGQGFQTILVTAAIAEMLGEQLSSLMECLERDNAGK 379 (420)
Q Consensus 309 l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~---~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~~~~~~ 379 (420)
+++|||||||+|++ |+.++..++..+..... ......+|+++||||++.. ..++..++.++..+.+..
T Consensus 176 l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~ 246 (1054)
T 1gku_B 176 FDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGS 246 (1054)
T ss_dssp CSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSC
T ss_pred CCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccC
Confidence 99999999999997 67888888887742110 0011368999999999988 766777777776554443
No 40
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.94 E-value=1.3e-26 Score=239.39 Aligned_cols=189 Identities=15% Similarity=0.205 Sum_probs=152.9
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 140 VSSFQELGLKAEMIKAVEK-MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
+.+|++|+|++.+...|.+ +||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~----------------- 63 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL----------------- 63 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH-----------------
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH-----------------
Confidence 4579999999999999998 8999999999999999999999999999999999999999986
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH----HhcCCCcEEEeChhH
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED----VSNAPIGMLIATPSE 294 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~----~l~~~~~IlV~TP~~ 294 (420)
....+|||+|+++|+.|++..+..+ ++.+..+.|+........ .....++|+|+||++
T Consensus 64 --------------~~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~ 125 (523)
T 1oyw_A 64 --------------LNGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPER 125 (523)
T ss_dssp --------------SSSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHH
T ss_pred --------------hCCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHH
Confidence 2357999999999999999888875 678888888877654332 234568999999999
Q ss_pred HHhchhcCcccCCCceEEEecCcchhhccC--CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHh
Q 014666 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRG--FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369 (420)
Q Consensus 295 L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~--~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~ 369 (420)
|........+...++.+|||||||++.++| |...+..+...+... ++.|++++|||+++.+..-+..++
T Consensus 126 l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~------~~~~~i~lSAT~~~~~~~~i~~~l 196 (523)
T 1oyw_A 126 LMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF------PTLPFMALTATADDTTRQDIVRLL 196 (523)
T ss_dssp HTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC------TTSCEEEEESCCCHHHHHHHHHHH
T ss_pred HhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhC------CCCCEEEEeCCCCHHHHHHHHHHh
Confidence 965433334455789999999999999887 777766543322221 368999999999988766544444
No 41
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.93 E-value=7.8e-26 Score=234.50 Aligned_cols=174 Identities=16% Similarity=0.143 Sum_probs=133.6
Q ss_pred CCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEE
Q 014666 160 GLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239 (420)
Q Consensus 160 g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Li 239 (420)
+...|+|+|.++|+.++.|+|+++++|||+|||++|++|+++.+... ....++++||
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~-----------------------~~~~~~~~li 60 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-----------------------PAGRKAKVVF 60 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-----------------------CSSCCCCEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhC-----------------------cccCCCeEEE
Confidence 44589999999999999999999999999999999999999854221 0123678999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcc-cCCCceEEEecCcc
Q 014666 240 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEAD 318 (420)
Q Consensus 240 l~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~lVlDEaD 318 (420)
|+||++|+.|++..+..+....++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||
T Consensus 61 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah 140 (556)
T 4a2p_A 61 LATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECH 140 (556)
T ss_dssp ECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGG
T ss_pred EeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCc
Confidence 99999999999999999998889999999999877666556666799999999999999998877 78999999999999
Q ss_pred hhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 319 ~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
++.+.++...+ +..+.........+.+|+++||||++.
T Consensus 141 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 141 NTTGNHPYNVL---MTRYLEQKFNSASQLPQILGLTASVGV 178 (556)
T ss_dssp GCSTTSHHHHH---HHHHHHHHHCC---CCEEEEEESCCCC
T ss_pred ccCCcchHHHH---HHHHHHhhhcccCCCCeEEEEeCCccc
Confidence 99877743333 221111111112346899999999953
No 42
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=4.9e-26 Score=239.68 Aligned_cols=147 Identities=17% Similarity=0.222 Sum_probs=114.9
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|. .||++|..++|.++.|+ |++++||||||++|++|++...+ .+++++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l----------------------------~g~~vl 119 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL----------------------------TGKGVH 119 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT----------------------------TSSCCE
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH----------------------------cCCcEE
Confidence 565 89999999999999998 99999999999999999986211 356799
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcC------cccCCCceE
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIRY 311 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~~ 311 (420)
||+|||+||.|++..+..++.++++++++++||.+... +.+..+++|+|||||+| .++|..+ .+.++++.+
T Consensus 120 VltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~ 197 (853)
T 2fsf_A 120 VVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHY 197 (853)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCE
T ss_pred EEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcE
Confidence 99999999999999999999999999999999988643 34445799999999999 6877654 356789999
Q ss_pred EEecCcchhh-ccC---------------CHHHHHHHHHHchh
Q 014666 312 VVLDEADTLF-DRG---------------FGPEISKILNPLKD 338 (420)
Q Consensus 312 lVlDEaD~~l-~~~---------------~~~~l~~Il~~l~~ 338 (420)
+||||||+|| |++ |...+..|+..|+.
T Consensus 198 lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 198 ALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp EEESCHHHHTTTTTTCEEEEEEC--------------------
T ss_pred EEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 9999999999 543 67889999988863
No 43
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.93 E-value=1.7e-25 Score=231.54 Aligned_cols=172 Identities=14% Similarity=0.114 Sum_probs=139.2
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.|+|+|.++++.++.|+|++++++||+|||++|++|+++.+.+. ....++++|||+|
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~-----------------------~~~~~~~~lil~P 60 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKF-----------------------PCGQKGKVVFFAN 60 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-----------------------CSSCCCCEEEECS
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhc-----------------------ccCCCCEEEEEeC
Confidence 69999999999999999999999999999999999999854321 0123678999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcc-cCCCceEEEecCcchhh
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDEADTLF 321 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~lVlDEaD~~l 321 (420)
|++|+.|++..+..+....++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++|||||||++.
T Consensus 61 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~ 140 (555)
T 3tbk_A 61 QIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTS 140 (555)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCS
T ss_pred CHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccC
Confidence 99999999999999998889999999999877665555556789999999999999988777 78899999999999998
Q ss_pred ccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 322 ~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
+.+....+. ...+........+..+|+++||||++.
T Consensus 141 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 141 KNHPYNQIM--FRYLDHKLGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp TTCHHHHHH--HHHHHHHTSSCCSCCCEEEEEESCCCC
T ss_pred CcchHHHHH--HHHHHhhhccccCCCCeEEEEecCccc
Confidence 765322221 122222222233457899999999965
No 44
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.93 E-value=2.9e-25 Score=237.09 Aligned_cols=180 Identities=14% Similarity=0.153 Sum_probs=139.4
Q ss_pred HHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCC
Q 014666 153 IKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKP 232 (420)
Q Consensus 153 ~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 232 (420)
..+|..+||..|+++|.++++.++.|+|+|+++|||+|||++|++|+++.+... ...
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~-----------------------~~~ 59 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKF-----------------------PQG 59 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS-----------------------CTT
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhC-----------------------ccC
Confidence 456778999999999999999999999999999999999999999999854221 011
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcc-cCCCceE
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRY 311 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~ 311 (420)
.++++|||+||++|+.|++..+..++...++++..++|+.....+...+..+++|+|+||++|.+++..+.+ .+.++++
T Consensus 60 ~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~ 139 (696)
T 2ykg_A 60 QKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTL 139 (696)
T ss_dssp CCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccE
Confidence 346899999999999999999999998889999999999876555555556799999999999999998776 7889999
Q ss_pred EEecCcchhhccCCHHHHHHHHH-HchhhhcccCCCCceEEEEeeccc
Q 014666 312 VVLDEADTLFDRGFGPEISKILN-PLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 312 lVlDEaD~~l~~~~~~~l~~Il~-~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
|||||||++.+... ...++. .+...........+|++++|||+.
T Consensus 140 vViDEaH~~~~~~~---~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 140 MIFDECHNTSKQHP---YNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp EEEETGGGCSTTCH---HHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred EEEeCCCcccCccc---HHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 99999999975541 222222 222111112235789999999997
No 45
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=5.3e-25 Score=232.17 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=141.3
Q ss_pred HCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.+|+ .||++|..++|.++.|+ |++++||+|||++|++|++...+ .+..|
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL----------------------------~g~~v 155 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL----------------------------AGNGV 155 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT----------------------------TTSCE
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHH----------------------------hCCCe
Confidence 4799 99999999999999998 99999999999999999975211 24579
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcC------cccCCCce
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDR------NVSCDDIR 310 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~------~~~l~~l~ 310 (420)
+||+||++||.|++..+..+..++|+++++++||.+.... ....+|+|+||||++| .++|... .+.+..+.
T Consensus 156 ~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~ 233 (922)
T 1nkt_A 156 HIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHH 233 (922)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCC
Confidence 9999999999999999999999999999999999886433 3344699999999999 6777543 46678999
Q ss_pred EEEecCcchhh-c---------------cCCHHHHHHHHHHchh-hhcccCCCCceEE-----------------EEeec
Q 014666 311 YVVLDEADTLF-D---------------RGFGPEISKILNPLKD-SALKSNGQGFQTI-----------------LVTAA 356 (420)
Q Consensus 311 ~lVlDEaD~~l-~---------------~~~~~~l~~Il~~l~~-~~~~~~~~~~Q~v-----------------~~SAT 356 (420)
++||||||.|| | ++|...+..|+..|+. .........+|++ +||||
T Consensus 234 ~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat 313 (922)
T 1nkt_A 234 YAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAA 313 (922)
T ss_dssp EEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCST
T ss_pred EEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCc
Confidence 99999999999 4 3578899999999862 1111122478999 99999
Q ss_pred ccchHH
Q 014666 357 IAEMLG 362 (420)
Q Consensus 357 l~~~v~ 362 (420)
++..+.
T Consensus 314 ~~~l~~ 319 (922)
T 1nkt_A 314 NSPLVS 319 (922)
T ss_dssp TCCHHH
T ss_pred chhHHH
Confidence 886333
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.92 E-value=6.4e-25 Score=237.84 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=135.9
Q ss_pred HCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.+|+..|+|+|..+|+.++.|+|+|++++||+|||++|++|+++.+.+. ....++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~-----------------------~~~~~~~~ 299 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-----------------------PAGRKAKV 299 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTC-----------------------CSSCCCCE
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhc-----------------------cccCCCeE
Confidence 3578899999999999999999999999999999999999999854321 01236789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcc-cCCCceEEEecC
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDE 316 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~lVlDE 316 (420)
|||+||++|+.|++..+..++...++++..++|+.....+...+..+++|+||||++|.+++..+.+ .+.++++|||||
T Consensus 300 Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDE 379 (797)
T 4a2q_A 300 VFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (797)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEEC
Confidence 9999999999999999999998889999999999977766666667799999999999999998777 788999999999
Q ss_pred cchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 317 aD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
||++.+.+. ...++..+...........+|++++|||++
T Consensus 380 aH~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 380 CHNTTGNHP---YNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp GGGCSTTSH---HHHHHHHHHHHHHTTCCCCCEEEEEESCCC
T ss_pred ccccCCCcc---HHHHHHHHHHHhhccCCCCCeEEEEcCCcc
Confidence 999987653 333333222221122235789999999995
No 47
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=2.8e-25 Score=202.22 Aligned_cols=175 Identities=16% Similarity=0.075 Sum_probs=123.2
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.+...|+++|.++++.++.|+++++++|||+|||++|+++++..+..... ...+.++|
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~----------------------~~~~~~~l 86 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK----------------------ASEPGKVI 86 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH----------------------TTCCCCEE
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc----------------------ccCCCcEE
Confidence 34558999999999999999999999999999999999999874422110 12356899
Q ss_pred EEcCcHHHHHH-HHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCc------ccCCCceE
Q 014666 239 VLCTTEESADQ-GFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN------VSCDDIRY 311 (420)
Q Consensus 239 il~PtreLa~Q-i~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~------~~l~~l~~ 311 (420)
|++||++|+.| +...+..+... ++++..+.|+.........+..+++|+|+||++|..++.... +.+.++++
T Consensus 87 il~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (216)
T 3b6e_A 87 VLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSL 165 (216)
T ss_dssp EEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSE
T ss_pred EEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccE
Confidence 99999999999 77778887655 778888888776544333334468999999999999987643 56788999
Q ss_pred EEecCcchhhccCCHHHHHHH-H-HHchhhh----cccCCCCceEEEEeec
Q 014666 312 VVLDEADTLFDRGFGPEISKI-L-NPLKDSA----LKSNGQGFQTILVTAA 356 (420)
Q Consensus 312 lVlDEaD~~l~~~~~~~l~~I-l-~~l~~~~----~~~~~~~~Q~v~~SAT 356 (420)
|||||||++++.+++..+... + ..+.... .....+.+++|++|||
T Consensus 166 iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 166 IIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp EEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred EEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 999999999987777776432 2 2221110 1122357899999998
No 48
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.5e-25 Score=206.38 Aligned_cols=183 Identities=13% Similarity=0.175 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhccc
Q 014666 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEAL 227 (420)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~ 227 (420)
.++.+.+.+...+...++++|..+++.+..|++++++|+||||||++|.++++..+....
T Consensus 46 ~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-------------------- 105 (235)
T 3llm_A 46 QDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-------------------- 105 (235)
T ss_dssp HCHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT--------------------
T ss_pred cCHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC--------------------
Confidence 455555555555555689999999999999999999999999999999999887432210
Q ss_pred CCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhc-cCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccC
Q 014666 228 LPMKPMHPRAIVLCTTEESADQGFHMAKFISH-CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSC 306 (420)
Q Consensus 228 ~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~-~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l 306 (420)
...+.++|+++||++|+.|+...+..... ..+..++... .........+++|+|||||+|++++.. .+
T Consensus 106 ---~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l 174 (235)
T 3llm_A 106 ---RAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSV-----RFESILPRPHASIMFCTVGVLLRKLEA---GI 174 (235)
T ss_dssp ---CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEE-----TTEEECCCSSSEEEEEEHHHHHHHHHH---CC
T ss_pred ---CCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEee-----chhhccCCCCCeEEEECHHHHHHHHHh---hh
Confidence 11345899999999999999877765432 2222222111 111111224588999999999999976 38
Q ss_pred CCceEEEecCcchh-hccCCH-HHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcc
Q 014666 307 DDIRYVVLDEADTL-FDRGFG-PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372 (420)
Q Consensus 307 ~~l~~lVlDEaD~~-l~~~~~-~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~ 372 (420)
.++++|||||||.+ ++++|. ..+..++...+ ++|+++||||++.+. +.+.+...|
T Consensus 175 ~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~---------~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 175 RGISHVIVDEIHERDINTDFLLVVLRDVVQAYP---------EVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp TTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT---------TSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred cCCcEEEEECCccCCcchHHHHHHHHHHHhhCC---------CCeEEEEecCCCHHH--HHHHcCCCC
Confidence 99999999999986 777776 45666665543 689999999999876 444444444
No 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.6e-24 Score=236.71 Aligned_cols=157 Identities=16% Similarity=0.222 Sum_probs=137.4
Q ss_pred HHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCC
Q 014666 156 VEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235 (420)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (420)
...++|. |+++|.++|+.+..|++++++||||||||++|.++++..+. .+.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~----------------------------~g~ 130 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK----------------------------NKQ 130 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH----------------------------TTC
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc----------------------------cCC
Confidence 3446785 99999999999999999999999999999999999987331 356
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEec
Q 014666 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 315 (420)
++||++||++|+.|++..+..+.. .+++++|+.... ..++|+|+||++|.+++.++...+.++++||||
T Consensus 131 rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViD 199 (1010)
T 2xgj_A 131 RVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 199 (1010)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred eEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEe
Confidence 899999999999999999988764 577788877543 357999999999999998887888999999999
Q ss_pred CcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 316 EADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 316 EaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
|||+|.+++++..++.++..++ .++|+|++|||+++.
T Consensus 200 EaH~l~d~~rg~~~e~il~~l~--------~~~~il~LSATi~n~ 236 (1010)
T 2xgj_A 200 EVHYMRDKERGVVWEETIILLP--------DKVRYVFLSATIPNA 236 (1010)
T ss_dssp TGGGGGCTTTHHHHHHHHHHSC--------TTCEEEEEECCCTTH
T ss_pred chhhhcccchhHHHHHHHHhcC--------CCCeEEEEcCCCCCH
Confidence 9999999999999999998886 378999999999874
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=1e-23 Score=241.73 Aligned_cols=192 Identities=15% Similarity=0.148 Sum_probs=151.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHhhHHHHhc-CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcc
Q 014666 148 LKAEMIKAVEKMGLFVPSEIQCVGIPAVLN-GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEA 226 (420)
Q Consensus 148 l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~-g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~ 226 (420)
|.....+.|...+|..++|+|.++|+.++. +.|++++||||||||++|.+|+++.+.+.
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-------------------- 970 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-------------------- 970 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC--------------------
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC--------------------
Confidence 566788888888999999999999999875 57899999999999999999999855321
Q ss_pred cCCCCCCCCeEEEEcCcHHHHHHHHHHHHH-hhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC--c
Q 014666 227 LLPMKPMHPRAIVLCTTEESADQGFHMAKF-ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR--N 303 (420)
Q Consensus 227 ~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~-l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~--~ 303 (420)
.+.++|||+|||+||.|++..+.. ++...+++++.++|+...+.. ...+++|+||||+++..++++. .
T Consensus 971 ------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~ 1041 (1724)
T 4f92_B 971 ------SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQR 1041 (1724)
T ss_dssp ------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTC
T ss_pred ------CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccc
Confidence 345799999999999999998865 667789999999998654432 2234799999999987777653 2
Q ss_pred ccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc
Q 014666 304 VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 304 ~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
..+++|++||+||+|.|.+ .++..++.++..+.... .....++|+|++|||+++ ..+++.++..+
T Consensus 1042 ~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~-~~~~~~~riI~lSATl~N-~~dla~WL~~~ 1106 (1724)
T 4f92_B 1042 KNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYIS-SQIERPIRIVALSSSLSN-AKDVAHWLGCS 1106 (1724)
T ss_dssp HHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHH-HTTSSCCEEEEEESCBTT-HHHHHHHHTCC
T ss_pred cccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHH-hhcCCCceEEEEeCCCCC-HHHHHHHhCCC
Confidence 3478999999999998765 57888888887765322 122357899999999986 45565555433
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=1e-23 Score=241.79 Aligned_cols=187 Identities=13% Similarity=0.117 Sum_probs=144.1
Q ss_pred CCCCCcHHHHhhHHHHh-cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 160 GLFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 160 g~~~pt~iQ~~~i~~i~-~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
||+.++++|.+++|.++ .++|++++||||||||++|.+++++.|.+... ........+.++|
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~-----------------~~~~~~~~~~k~l 138 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHIN-----------------MDGTINVDDFKII 138 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCC-----------------TTSSCCTTSCEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcc-----------------ccccccCCCCEEE
Confidence 89999999999999876 58899999999999999999999996643211 1111234577999
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCc--ccCCCceEEEecC
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN--VSCDDIRYVVLDE 316 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~--~~l~~l~~lVlDE 316 (420)
+|+|+++||.|++..+.......|++|..++|+.....+. ..+++|+||||+++..++++.. ..++++++|||||
T Consensus 139 yiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDE 215 (1724)
T 4f92_B 139 YIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDE 215 (1724)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETT
T ss_pred EECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEec
Confidence 9999999999999999988888899999999988754322 2458999999999766555432 2478999999999
Q ss_pred cchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHh
Q 014666 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369 (420)
Q Consensus 317 aD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~ 369 (420)
+|.+- ..++..++.++..+.... .....++|+|++|||+|+ ..+++.++-
T Consensus 216 vH~l~-d~RG~~lE~~l~rl~~~~-~~~~~~~riI~LSATl~N-~~dvA~wL~ 265 (1724)
T 4f92_B 216 IHLLH-DDRGPVLEALVARAIRNI-EMTQEDVRLIGLSATLPN-YEDVATFLR 265 (1724)
T ss_dssp GGGGG-STTHHHHHHHHHHHHHHH-HHHTCCCEEEEEECSCTT-HHHHHHHTT
T ss_pred chhcC-CccHHHHHHHHHHHHHHH-HhCCCCCcEEEEecccCC-HHHHHHHhC
Confidence 99664 468888888877653221 111257899999999986 455555443
No 52
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.90 E-value=6.4e-24 Score=233.07 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=134.5
Q ss_pred HCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
-.|+..|+++|.++|+.++.|+|++++++||+|||++|++|+++.+.+. ....++++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~-----------------------~~~~~~~v 299 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNM-----------------------PAGRKAKV 299 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTC-----------------------CSSCCCCE
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhc-----------------------cccCCCeE
Confidence 3478899999999999999999999999999999999999999844221 01236789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcc-cCCCceEEEecC
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNV-SCDDIRYVVLDE 316 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~-~l~~l~~lVlDE 316 (420)
|||+||++|+.|++..+..+....++++..++|+.....+...+..+++|+|+||++|.+++.++.+ .+.++++|||||
T Consensus 300 Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDE 379 (936)
T 4a2w_A 300 VFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 379 (936)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEET
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEEC
Confidence 9999999999999999999998889999999999876665555556789999999999999998776 788999999999
Q ss_pred cchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 317 ADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 317 aD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
||++...+. ...++..+...........+|+++||||++
T Consensus 380 aH~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 380 CHNTTGNHP---YNVLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp GGGCSTTCH---HHHHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred ccccCCCcc---HHHHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 999986653 333333332221122235689999999995
No 53
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.90 E-value=8.3e-24 Score=232.59 Aligned_cols=165 Identities=17% Similarity=0.176 Sum_probs=139.8
Q ss_pred HCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 158 KMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 158 ~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.++|. |+++|.++|+.++.|+|++++||||||||++|++++...+ ..+.++
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~----------------------------~~g~~v 85 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH----------------------------RNMTKT 85 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH----------------------------HTTCEE
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH----------------------------hcCCeE
Confidence 45774 8999999999999999999999999999999999987622 135689
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCc
Q 014666 238 IVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 317 (420)
||++||++|+.|++..+..+.. ++++..++|+... ...++|+|+||++|.+++..+...+.++.+||||||
T Consensus 86 lvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEa 156 (997)
T 4a4z_A 86 IYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEV 156 (997)
T ss_dssp EEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCT
T ss_pred EEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECc
Confidence 9999999999999999888643 6788889987753 244799999999999999888778899999999999
Q ss_pred chhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHh
Q 014666 318 DTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLM 369 (420)
Q Consensus 318 D~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~ 369 (420)
|++.+++|+..+..++..++ .++|+|++|||+++.. .+..++.
T Consensus 157 H~l~d~~~g~~~e~ii~~l~--------~~v~iIlLSAT~~n~~-ef~~~l~ 199 (997)
T 4a4z_A 157 HYVNDQDRGVVWEEVIIMLP--------QHVKFILLSATVPNTY-EFANWIG 199 (997)
T ss_dssp TCCCTTCTTCCHHHHHHHSC--------TTCEEEEEECCCTTHH-HHHHHHH
T ss_pred ccccccchHHHHHHHHHhcc--------cCCCEEEEcCCCCChH-HHHHHHh
Confidence 99999999999999998886 3789999999998754 4444443
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.88 E-value=6.9e-23 Score=218.77 Aligned_cols=174 Identities=17% Similarity=0.091 Sum_probs=128.7
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.|+|+|.++++.++.|+|+|+++|||+|||++|++|+++.+.+... ...+.++|||+|
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----------------------~~~~~~vlvl~P 64 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK----------------------ASEPGKVIVLVN 64 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH----------------------HTCCCCBCCEES
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc----------------------cCCCCeEEEEEC
Confidence 6999999999999999999999999999999999999985543211 113467999999
Q ss_pred cHHHHHHH-HHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhch------hcCcccCCCceEEEec
Q 014666 243 TEESADQG-FHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHI------EDRNVSCDDIRYVVLD 315 (420)
Q Consensus 243 treLa~Qi-~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l------~~~~~~l~~l~~lVlD 315 (420)
|++|+.|+ +..+..+... ++++..++|+.....+...+...++|+|+||++|.+.+ ....+.+.++++||||
T Consensus 65 ~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViD 143 (699)
T 4gl2_A 65 KVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIID 143 (699)
T ss_dssp CSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEE
T ss_pred CHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEE
Confidence 99999999 9999998765 58899999988766555555567999999999999988 4455678899999999
Q ss_pred CcchhhccCCHHHHHH-HHHH-chhhh----cccCCCCceEEEEeecccc
Q 014666 316 EADTLFDRGFGPEISK-ILNP-LKDSA----LKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 316 EaD~~l~~~~~~~l~~-Il~~-l~~~~----~~~~~~~~Q~v~~SATl~~ 359 (420)
|||++...++...+.. ++.. +.... .....+.+|+|++|||++.
T Consensus 144 EaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 144 ECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp SGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred CccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccc
Confidence 9999876554333332 2222 11100 0111246799999999987
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.87 E-value=4.2e-22 Score=213.11 Aligned_cols=167 Identities=15% Similarity=0.155 Sum_probs=131.4
Q ss_pred HHHHHHHHHCCCCCCcHHHHhhHHHHhcC------CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhh
Q 014666 150 AEMIKAVEKMGLFVPSEIQCVGIPAVLNG------KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRR 223 (420)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g------~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~ 223 (420)
..+...+..+|| .||++|..+|+.++.+ +|++++|+||||||++|++|++..+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~------------------- 415 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE------------------- 415 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH-------------------
Confidence 455566788999 8999999999998875 69999999999999999999998431
Q ss_pred hcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH---HhcC-CCcEEEeChhHHHhch
Q 014666 224 DEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSNA-PIGMLIATPSEVLQHI 299 (420)
Q Consensus 224 ~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~IlV~TP~~L~~~l 299 (420)
.+.+++|++||++||.|++..+..+....++++..++|+........ .+.. .++|+||||+.|.+
T Consensus 416 ---------~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-- 484 (780)
T 1gm5_A 416 ---------AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-- 484 (780)
T ss_dssp ---------HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH--
T ss_pred ---------cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh--
Confidence 24679999999999999999999998888999999999988765433 2333 49999999998855
Q ss_pred hcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 300 EDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
.+.+.++++|||||+|++.... ... +. ..+..+|+++||||+.+....
T Consensus 485 ---~~~~~~l~lVVIDEaHr~g~~q-----r~~---l~-----~~~~~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 485 ---DVHFKNLGLVIIDEQHRFGVKQ-----REA---LM-----NKGKMVDTLVMSATPIPRSMA 532 (780)
T ss_dssp ---CCCCSCCCEEEEESCCCC----------CC---CC-----SSSSCCCEEEEESSCCCHHHH
T ss_pred ---hhhccCCceEEecccchhhHHH-----HHH---HH-----HhCCCCCEEEEeCCCCHHHHH
Confidence 3458899999999999863211 111 11 112468999999998775544
No 56
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=2.6e-22 Score=191.12 Aligned_cols=155 Identities=14% Similarity=0.094 Sum_probs=124.2
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.|+++|.++++.++.+.+.+++++||+|||+++++++...+.+ ...++|||+|
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------------------~~~~~lil~P 165 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------------------------YEGKILIIVP 165 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH---------------------------CSSEEEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc---------------------------CCCeEEEEEC
Confidence 7999999999999888889999999999999998887763211 1237999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhc
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~ 322 (420)
|++|+.|+++.+..+....+..+..++||..... ....+.+|+|+||+.+..... ..+.++++|||||||++.
T Consensus 166 t~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~~---~~~~~~~~vIiDEaH~~~- 238 (282)
T 1rif_A 166 TTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPK---EWFSQFGMMMNDECHLAT- 238 (282)
T ss_dssp SHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSCG---GGGGGEEEEEEETGGGCC-
T ss_pred CHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhHH---HHHhhCCEEEEECCccCC-
Confidence 9999999999999987766777888888765432 223468999999998865532 346788999999999996
Q ss_pred cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 323 ~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
...+..++..+.. ..|+++||||+++...
T Consensus 239 ---~~~~~~il~~~~~--------~~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 239 ---GKSISSIISGLNN--------CMFKFGLSGSLRDGKA 267 (282)
T ss_dssp ---HHHHHHHTTTCTT--------CCEEEEECSSCCTTST
T ss_pred ---cccHHHHHHHhhc--------CCeEEEEeCCCCCcch
Confidence 3477777777642 6899999999987543
No 57
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=2e-21 Score=196.56 Aligned_cols=163 Identities=16% Similarity=0.101 Sum_probs=132.7
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.|+|+|.++++.++.+ +++++++||+|||++++++++..+. ..+.++|||+|
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~---------------------------~~~~~~liv~P 60 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT---------------------------KYGGKVLMLAP 60 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH---------------------------HSCSCEEEECS
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh---------------------------cCCCeEEEEEC
Confidence 6999999999999999 9999999999999999999987431 13567999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhc
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~ 322 (420)
|++|+.|+...+..+....+.++..++|+.........+ .+++|+|+||+.|...+..+.+.+.++++|||||||++.+
T Consensus 61 ~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 61 TKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp SHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred CHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC
Confidence 999999999999988754556888888888766544333 3579999999999999988888889999999999999986
Q ss_pred cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHH
Q 014666 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLG 362 (420)
Q Consensus 323 ~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~ 362 (420)
......+...+.... ...+++++|||+.....
T Consensus 140 ~~~~~~~~~~~~~~~--------~~~~~l~lTaTp~~~~~ 171 (494)
T 1wp9_A 140 NYAYVFIAREYKRQA--------KNPLVIGLTASPGSTPE 171 (494)
T ss_dssp TCHHHHHHHHHHHHC--------SSCCEEEEESCSCSSHH
T ss_pred CCcHHHHHHHHHhcC--------CCCeEEEEecCCCCCcH
Confidence 654555544444332 36899999999985433
No 58
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.86 E-value=1.8e-23 Score=219.26 Aligned_cols=175 Identities=13% Similarity=0.047 Sum_probs=123.4
Q ss_pred ccc-CCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHh
Q 014666 143 FQE-LGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQML 221 (420)
Q Consensus 143 f~~-l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l 221 (420)
|.. +++++.++.+|... +..++|+|+.+++.+++|+|++++|+||||||++|++|+++.+..
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---------------- 213 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---------------- 213 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----------------
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----------------
Confidence 444 66777777766653 578999999999999999999999999999999999999985421
Q ss_pred hhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhc
Q 014666 222 RRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED 301 (420)
Q Consensus 222 ~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~ 301 (420)
.++++|||+|||+||.|++..+.. +.+....+... .....+..|.+.|.+.|...+..
T Consensus 214 -----------~~~~vLvl~PtreLa~Qi~~~l~~------~~v~~~~~~l~-----~~~tp~~~i~~~t~~~l~~~l~~ 271 (618)
T 2whx_A 214 -----------RRLRTLILAPTRVVAAEMEEALRG------LPIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLS 271 (618)
T ss_dssp -----------TTCCEEEEESSHHHHHHHHHHTTT------SCEEECCTTSS-----CCCCSSSCEEEEEHHHHHHHHHH
T ss_pred -----------CCCeEEEEcChHHHHHHHHHHhcC------CceeEecccce-----eccCCCceEEEEChHHHHHHHhc
Confidence 356899999999999999987752 22321111000 00112234555566665554443
Q ss_pred CcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHH
Q 014666 302 RNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 365 (420)
Q Consensus 302 ~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~ 365 (420)
. ..+.++++|||||||+| +++|...+..|+..++. .++|+++||||++..+..++
T Consensus 272 ~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-------~~~q~il~SAT~~~~~~~~~ 326 (618)
T 2whx_A 272 S-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-------GEAAAIFMTATPPGSTDPFP 326 (618)
T ss_dssp C-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-------TSCEEEEECSSCTTCCCSSC
T ss_pred c-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-------cCccEEEEECCCchhhhhhh
Confidence 3 34899999999999998 78888899999988753 47899999999998765443
No 59
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.86 E-value=1.1e-21 Score=206.50 Aligned_cols=130 Identities=16% Similarity=0.217 Sum_probs=113.4
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|| .||++|..++|.+++|+ |++++||+|||++|++|++...+ .+.+|+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL----------------------------~G~qv~ 124 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL----------------------------TGKGVH 124 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT----------------------------TCSCCE
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH----------------------------hCCCEE
Confidence 799 99999999999999998 99999999999999999964111 245799
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHH-HhchhcCc------ccCC---C
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEV-LQHIEDRN------VSCD---D 308 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L-~~~l~~~~------~~l~---~ 308 (420)
||+||++||.|++..+..+..++|+++++++||.+... +....+++|+||||++| .++|..+. +.+. .
T Consensus 125 VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~ 202 (997)
T 2ipc_A 125 VVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHP 202 (997)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSS
T ss_pred EEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCC
Confidence 99999999999999999999999999999999988543 33345699999999999 88887652 4577 8
Q ss_pred ceEEEecCcchhh
Q 014666 309 IRYVVLDEADTLF 321 (420)
Q Consensus 309 l~~lVlDEaD~~l 321 (420)
+.++||||||.||
T Consensus 203 l~~lIIDEaDsmL 215 (997)
T 2ipc_A 203 LHYAIIDEVDSIL 215 (997)
T ss_dssp SCEEEETTHHHHT
T ss_pred cceEEEechHHHH
Confidence 9999999999987
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.85 E-value=4.9e-22 Score=201.63 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=115.1
Q ss_pred CCCCCcHHHHhhHHHHhcCCcE-EEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 160 GLFVPSEIQCVGIPAVLNGKSV-VLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 160 g~~~pt~iQ~~~i~~i~~g~dv-l~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
|+..|+|+|+ +||.++.|+|+ +++||||||||++|++|++..+.. .++++|
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---------------------------~~~~~l 52 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL---------------------------RRLRTL 52 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH---------------------------TTCCEE
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh---------------------------cCCcEE
Confidence 7889999985 79999999887 999999999999999999974321 356899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcc
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD 318 (420)
|++|||+||.|++..+. ++.+....+.... ....+..|.|+|++.|...+.+. ..+.++++|||||||
T Consensus 53 vl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah 120 (451)
T 2jlq_A 53 ILAPTRVVAAEMEEALR------GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAH 120 (451)
T ss_dssp EEESSHHHHHHHHHHTT------TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTT
T ss_pred EECCCHHHHHHHHHHhc------Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCc
Confidence 99999999999998774 3333222211110 11234579999999998887654 458899999999999
Q ss_pred hhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHH
Q 014666 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 319 ~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
++ +.++...+..+..... ..++|+++||||++..+..+
T Consensus 121 ~~-~~~~~~~~~~~~~~~~-------~~~~~~i~~SAT~~~~~~~~ 158 (451)
T 2jlq_A 121 FT-DPCSVAARGYISTRVE-------MGEAAAIFMTATPPGSTDPF 158 (451)
T ss_dssp CC-SHHHHHHHHHHHHHHH-------TTSCEEEEECSSCTTCCCSS
T ss_pred cC-CcchHHHHHHHHHhhc-------CCCceEEEEccCCCccchhh
Confidence 77 4444444444433221 14789999999999865543
No 61
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.85 E-value=2.1e-21 Score=199.77 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=128.7
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
..|+++|..+++.++.++|++++++||+|||++|++++...+.. ...++|||+
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~---------------------------~~~~vlvl~ 164 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN---------------------------YEGKILIIV 164 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH---------------------------CSSEEEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC---------------------------CCCeEEEEE
Confidence 37999999999999999999999999999999999998873311 234899999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhh
Q 014666 242 TTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l 321 (420)
||++|+.|++..+..+....++.+..++|+.....+ +..+++|+||||+.|... ....+.++++|||||||++.
T Consensus 165 P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~ 238 (510)
T 2oca_A 165 PTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT 238 (510)
T ss_dssp SSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCC
T ss_pred CcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCC
Confidence 999999999999999877777888888888766543 456789999999987554 33456789999999999986
Q ss_pred ccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 322 ~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
. ..+..++..+. ...++++||||++.....
T Consensus 239 ~----~~~~~il~~~~--------~~~~~l~lSATp~~~~~~ 268 (510)
T 2oca_A 239 G----KSISSIISGLN--------NCMFKFGLSGSLRDGKAN 268 (510)
T ss_dssp H----HHHHHHGGGCT--------TCCEEEEEESCGGGCSSC
T ss_pred c----ccHHHHHHhcc--------cCcEEEEEEeCCCCCccc
Confidence 4 56777777664 367999999999876533
No 62
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.85 E-value=3.1e-20 Score=207.10 Aligned_cols=185 Identities=17% Similarity=0.119 Sum_probs=144.6
Q ss_pred CCCCHHHHHHH-HHCCCCCCcHHHHhhHHHHhc----CC--cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 146 LGLKAEMIKAV-EKMGLFVPSEIQCVGIPAVLN----GK--SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 146 l~l~~~l~~~l-~~~g~~~pt~iQ~~~i~~i~~----g~--dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
++++......+ ..+||. +||+|..+|+.++. |+ |++++++||+|||++|+++++..+
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~--------------- 649 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--------------- 649 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH---------------
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH---------------
Confidence 45666666665 457885 79999999998876 65 999999999999999999987622
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH---HhcC-CCcEEEeChhH
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED---VSNA-PIGMLIATPSE 294 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~---~l~~-~~~IlV~TP~~ 294 (420)
..+.+++||+||++||.|++..+..+....++++..+.|......... .+.. .++|+||||+.
T Consensus 650 -------------~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~l 716 (1151)
T 2eyq_A 650 -------------DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 716 (1151)
T ss_dssp -------------TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHH
T ss_pred -------------HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHH
Confidence 135689999999999999999999887777888888888766554432 2333 59999999987
Q ss_pred HHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcchh
Q 014666 295 VLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECLER 374 (420)
Q Consensus 295 L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~~~ 374 (420)
|.. .+.+.++++|||||+|++ +.....++..+. .++|+++||||+++....+....+.++..
T Consensus 717 l~~-----~~~~~~l~lvIiDEaH~~-----g~~~~~~l~~l~--------~~~~vl~lSATp~p~~l~~~~~~~~~~~~ 778 (1151)
T 2eyq_A 717 LQS-----DVKFKDLGLLIVDEEHRF-----GVRHKERIKAMR--------ANVDILTLTATPIPRTLNMAMSGMRDLSI 778 (1151)
T ss_dssp HHS-----CCCCSSEEEEEEESGGGS-----CHHHHHHHHHHH--------TTSEEEEEESSCCCHHHHHHHTTTSEEEE
T ss_pred HhC-----CccccccceEEEechHhc-----ChHHHHHHHHhc--------CCCCEEEEcCCCChhhHHHHHhcCCCceE
Confidence 643 356889999999999985 344556666665 37899999999988887777777777655
Q ss_pred ccC
Q 014666 375 DNA 377 (420)
Q Consensus 375 ~~~ 377 (420)
+..
T Consensus 779 i~~ 781 (1151)
T 2eyq_A 779 IAT 781 (1151)
T ss_dssp CCC
T ss_pred Eec
Confidence 543
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.84 E-value=9.5e-22 Score=205.49 Aligned_cols=148 Identities=13% Similarity=0.045 Sum_probs=117.6
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.+++.|..+++.+.+++|++++|+||||||++|.+|+++ .+.++||++|
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------------------------------~g~~vLVl~P 265 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------------------------------QGYKVLVLNP 265 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------------------------------TTCCEEEEES
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------------------------------CCCeEEEEcc
Confidence 345556666667778999999999999999999999987 3458999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhc
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~ 322 (420)
||+||.|+++.+... .+..+...+|+.. +..+++|+|+|||+| +.+..+.+.++++||||||| |++
T Consensus 266 TReLA~Qia~~l~~~---~g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~ 331 (666)
T 3o8b_A 266 SVAATLGFGAYMSKA---HGIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STD 331 (666)
T ss_dssp CHHHHHHHHHHHHHH---HSCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCS
T ss_pred hHHHHHHHHHHHHHH---hCCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcC
Confidence 999999998865443 3556667777654 456789999999998 45667788999999999995 678
Q ss_pred cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 323 ~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
++|...+..|+..++.. ....+++||||++..+
T Consensus 332 ~~~~~~l~~Il~~l~~~------~~~llil~SAT~~~~i 364 (666)
T 3o8b_A 332 STTILGIGTVLDQAETA------GARLVVLATATPPGSV 364 (666)
T ss_dssp HHHHHHHHHHHHHTTTT------TCSEEEEEESSCTTCC
T ss_pred ccHHHHHHHHHHhhhhc------CCceEEEECCCCCccc
Confidence 88999999999988741 1233788899999853
No 64
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.82 E-value=5.4e-20 Score=187.44 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=114.0
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.|+|+|.++++.++.+++++++++||+|||++|+.++.. .+.++|||+|
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~-------------------------------~~~~~Lvl~P 141 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE-------------------------------LSTPTLIVVP 141 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHH-------------------------------HCSCEEEEES
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHH-------------------------------cCCCEEEEEC
Confidence 699999999999999999999999999999999999876 1457999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCc-eecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhh
Q 014666 243 TEESADQGFHMAKFISHCARLD-SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~-~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l 321 (420)
|++|+.|++..+..+ ++. +..+.|+... .++|+|+||+.+...+..- ..++++|||||||++.
T Consensus 142 ~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~ 205 (472)
T 2fwr_A 142 TLALAEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLP 205 (472)
T ss_dssp SHHHHHHHHHHGGGG----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTT
T ss_pred CHHHHHHHHHHHHhC----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCC
Confidence 999999999888874 677 7777776542 4789999999998776521 2458999999999998
Q ss_pred ccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 322 ~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
+.+|.. ++..++ ..+++++|||+..
T Consensus 206 ~~~~~~----~~~~~~---------~~~~l~lSATp~~ 230 (472)
T 2fwr_A 206 AESYVQ----IAQMSI---------APFRLGLTATFER 230 (472)
T ss_dssp STTTHH----HHHTCC---------CSEEEEEESCCCC
T ss_pred ChHHHH----HHHhcC---------CCeEEEEecCccC
Confidence 877653 454443 5789999999973
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.81 E-value=1.2e-21 Score=207.08 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=110.8
Q ss_pred HHHHCCCC-----CCcHHHH-----hhHHHHh------cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhH
Q 014666 155 AVEKMGLF-----VPSEIQC-----VGIPAVL------NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGIT 218 (420)
Q Consensus 155 ~l~~~g~~-----~pt~iQ~-----~~i~~i~------~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~ 218 (420)
+|..+||. .||+||+ .+||.++ .|+|++++|+||||||++|++|+++.+..
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~------------- 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ------------- 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------------
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------------
Confidence 45556777 8999999 9999888 89999999999999999999999984321
Q ss_pred hHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhc
Q 014666 219 QMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQH 298 (420)
Q Consensus 219 ~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~ 298 (420)
.++++|||+||++||.|++..+..+ ++ ....+. + -.|+||++++++
T Consensus 269 --------------~~~~~lilaPTr~La~Q~~~~l~~~----~i--~~~~~~---------l-----~~v~tp~~ll~~ 314 (673)
T 2wv9_A 269 --------------KRLRTAVLAPTRVVAAEMAEALRGL----PV--RYLTPA---------V-----QREHSGNEIVDV 314 (673)
T ss_dssp --------------TTCCEEEEESSHHHHHHHHHHTTTS----CC--EECCC-----------------CCCCSCCCEEE
T ss_pred --------------CCCcEEEEccHHHHHHHHHHHHhcC----Ce--eeeccc---------c-----cccCCHHHHHHH
Confidence 3568999999999999999877643 11 111110 0 016788877776
Q ss_pred hhcCcc--------cCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHH
Q 014666 299 IEDRNV--------SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 299 l~~~~~--------~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
+..+.+ .+.++++|||||||+| +..+...+..+...++. .++|+++||||+++.+..+
T Consensus 315 l~~~~l~~~l~~~~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-------~~~~vl~~SAT~~~~i~~~ 380 (673)
T 2wv9_A 315 MCHATLTHRLMSPLRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-------GEAAAIFMTATPPGTSDPF 380 (673)
T ss_dssp EEHHHHHHHHHSSSCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-------TSCEEEEECSSCTTCCCSS
T ss_pred HHhhhhHHHHhcccccccceEEEEeCCccc-CccHHHHHHHHHHhccc-------cCCcEEEEcCCCChhhhhh
Confidence 655433 5899999999999998 33333444444444431 3789999999999876544
No 66
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.81 E-value=1.2e-19 Score=194.82 Aligned_cols=190 Identities=12% Similarity=0.130 Sum_probs=133.0
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHh-cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhh
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL-NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGI 217 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~-~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~ 217 (420)
++..|.++++++.+.+.+...| ..|+++|+.+|+.++ .|++++++||||||||+ ++|++-....
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~------------ 134 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDE------------ 134 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHH------------
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhc------------
Confidence 4668999999999999999998 789999999999765 56789999999999999 5665521000
Q ss_pred HhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHh
Q 014666 218 TQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQ 297 (420)
Q Consensus 218 ~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~ 297 (420)
.. ...+.+++|++|+|+||.|++..+.. ..++.+...+|+.... ........+|+|+|||++.+
T Consensus 135 ---~~--------~~~g~~ilvl~P~r~La~q~~~~l~~---~~~~~v~~~vG~~i~~--~~~~~~~~~I~v~T~G~l~r 198 (773)
T 2xau_A 135 ---MP--------HLENTQVACTQPRRVAAMSVAQRVAE---EMDVKLGEEVGYSIRF--ENKTSNKTILKYMTDGMLLR 198 (773)
T ss_dssp ---CG--------GGGTCEEEEEESCHHHHHHHHHHHHH---HTTCCBTTTEEEEETT--EEECCTTCSEEEEEHHHHHH
T ss_pred ---cc--------cCCCceEEecCchHHHHHHHHHHHHH---HhCCchhheecceecc--ccccCCCCCEEEECHHHHHH
Confidence 00 01256799999999999998875533 3345554444432110 01123467999999999998
Q ss_pred chhcCcccCCCceEEEecCcch-hhccCC-HHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhcc
Q 014666 298 HIEDRNVSCDDIRYVVLDEADT-LFDRGF-GPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMECL 372 (420)
Q Consensus 298 ~l~~~~~~l~~l~~lVlDEaD~-~l~~~~-~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~~ 372 (420)
.+... ..+.++++|||||+|. +++..+ ...+..++... ++.|+|+||||++. ..+ ..++.+.
T Consensus 199 ~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---------~~~~iIl~SAT~~~--~~l-~~~~~~~ 262 (773)
T 2xau_A 199 EAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---------PDLKIIIMSATLDA--EKF-QRYFNDA 262 (773)
T ss_dssp HHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---------TTCEEEEEESCSCC--HHH-HHHTTSC
T ss_pred HHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHHHhC---------CCceEEEEeccccH--HHH-HHHhcCC
Confidence 87765 3489999999999995 666432 22233333322 37899999999964 333 4455543
No 67
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.81 E-value=3.2e-19 Score=165.48 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=110.7
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
..|+++|.+++..++.+++++++++||+|||++++.++.. .+.++||++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~-------------------------------~~~~~liv~ 140 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINE-------------------------------LSTPTLIVV 140 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHH-------------------------------SCSCEEEEE
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHH-------------------------------cCCCEEEEe
Confidence 3799999999999999999999999999999999888765 145699999
Q ss_pred CcHHHHHHHHHHHHHhhccCCCc-eecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchh
Q 014666 242 TTEESADQGFHMAKFISHCARLD-SSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l~~~~~i~-~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~ 320 (420)
||++|+.|+...+..+ ++. +..+.|+.. ...+|+|+|++.+...+.. ...++++|||||||++
T Consensus 141 P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l 204 (237)
T 2fz4_A 141 PTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHL 204 (237)
T ss_dssp SSHHHHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCC
T ss_pred CCHHHHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccC
Confidence 9999999998888773 667 677766553 2478999999998877652 1256899999999999
Q ss_pred hccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 321 l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
.+..| ..++..++ ..+++++|||++.
T Consensus 205 ~~~~~----~~i~~~~~---------~~~~l~LSATp~r 230 (237)
T 2fz4_A 205 PAESY----VQIAQMSI---------APFRLGLTATFER 230 (237)
T ss_dssp CTTTH----HHHHHTCC---------CSEEEEEEESCC-
T ss_pred CChHH----HHHHHhcc---------CCEEEEEecCCCC
Confidence 76553 34555443 5789999999975
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.79 E-value=3.2e-20 Score=187.68 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=101.5
Q ss_pred HHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 253 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 253 (420)
++++|+|++++|+||||||++|++|+++.+.. .++++||++||++||.|++..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---------------------------~~~~~lil~Ptr~La~Q~~~~ 56 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR---------------------------RRLRTLVLAPTRVVLSEMKEA 56 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---------------------------TTCCEEEEESSHHHHHHHHHH
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---------------------------cCCeEEEEcchHHHHHHHHHH
Confidence 46789999999999999999999999984421 356899999999999999988
Q ss_pred HHHhhccCCCceecccCCCChHHHHHHhcCCCcE-EEeChhHHHhchhcCcc--------cCCCceEEEecCcchhhccC
Q 014666 254 AKFISHCARLDSSMENGGVSSKALEDVSNAPIGM-LIATPSEVLQHIEDRNV--------SCDDIRYVVLDEADTLFDRG 324 (420)
Q Consensus 254 ~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~I-lV~TP~~L~~~l~~~~~--------~l~~l~~lVlDEaD~~l~~~ 324 (420)
+..+ .+....+ .+ .|+||+++.+++..+.+ .+.++++|||||||+| +.+
T Consensus 57 l~~~------~v~~~~~---------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~ 114 (440)
T 1yks_A 57 FHGL------DVKFHTQ---------------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPA 114 (440)
T ss_dssp TTTS------CEEEESS---------------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHH
T ss_pred HhcC------CeEEecc---------------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-Ccc
Confidence 7643 2221111 11 48899999888776544 3789999999999998 455
Q ss_pred CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHH
Q 014666 325 FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQL 365 (420)
Q Consensus 325 ~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~ 365 (420)
|...+..+...+.. .++|+++||||+++.+..++
T Consensus 115 ~~~~~~~~~~~~~~-------~~~~~l~~SAT~~~~~~~~~ 148 (440)
T 1yks_A 115 SIAARGWAAHRARA-------NESATILMTATPPGTSDEFP 148 (440)
T ss_dssp HHHHHHHHHHHHHT-------TSCEEEEECSSCTTCCCSSC
T ss_pred hHHHHHHHHHHhcc-------CCceEEEEeCCCCchhhhhh
Confidence 55455555444431 37899999999988765443
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.74 E-value=3e-18 Score=174.16 Aligned_cols=141 Identities=17% Similarity=0.146 Sum_probs=96.7
Q ss_pred HHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHH
Q 014666 172 IPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGF 251 (420)
Q Consensus 172 i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~ 251 (420)
...+.+|+|++++||||||||++|++|+++.+.. .++++||++|||+||.|++
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---------------------------~~~~~lvl~Ptr~La~Q~~ 67 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---------------------------QRLRTAVLAPTRVVAAEMA 67 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---------------------------TTCCEEEEECSHHHHHHHH
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---------------------------CCCcEEEECchHHHHHHHH
Confidence 3356789999999999999999999999984421 3468999999999999999
Q ss_pred HHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcch-----hhccCCH
Q 014666 252 HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADT-----LFDRGFG 326 (420)
Q Consensus 252 ~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~-----~l~~~~~ 326 (420)
..+. ++.+....+..... -..+.-+.++|.+.+...+... ..+.++++|||||||+ ++..+|.
T Consensus 68 ~~l~------g~~v~~~~~~~~~~-----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~ 135 (459)
T 2z83_A 68 EALR------GLPVRYQTSAVQRE-----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYI 135 (459)
T ss_dssp HHTT------TSCEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHH
T ss_pred HHhc------CceEeEEecccccC-----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHH
Confidence 8876 33333222211110 1123456677888876665543 4588999999999998 4444332
Q ss_pred HHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHH
Q 014666 327 PEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 327 ~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
.. .+.. .++|+++||||++..+..+
T Consensus 136 ~~------~~~~-------~~~~~il~SAT~~~~~~~~ 160 (459)
T 2z83_A 136 AT------KVEL-------GEAAAIFMTATPPGTTDPF 160 (459)
T ss_dssp HH------HHHT-------TSCEEEEECSSCTTCCCSS
T ss_pred HH------Hhcc-------CCccEEEEEcCCCcchhhh
Confidence 22 1111 3789999999999876543
No 70
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.74 E-value=5.6e-18 Score=170.76 Aligned_cols=141 Identities=18% Similarity=0.118 Sum_probs=97.9
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
+|+|++++|+||||||++|++|+++.+.. .++++||++||++||.|++..+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~---------------------------~g~~~lvl~Pt~~La~Q~~~~~~- 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK---------------------------KRLRTVILAPTRVVASEMYEALR- 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH---------------------------TTCCEEEEESSHHHHHHHHHHTT-
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh---------------------------CCCCEEEECcHHHHHHHHHHHhC-
Confidence 47899999999999999999999963321 35689999999999999887765
Q ss_pred hhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCCHHHHHHHHHHc
Q 014666 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGFGPEISKILNPL 336 (420)
Q Consensus 257 l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l 336 (420)
++.+....|+... .-..+.-+.+.|.+.+...+.. ...+.++++|||||||++ +.++...+..+....
T Consensus 53 -----~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~ 120 (431)
T 2v6i_A 53 -----GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRV 120 (431)
T ss_dssp -----TSCEEEC--------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHH
T ss_pred -----CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHh
Confidence 4555555544221 1112345667788887666555 455899999999999997 444444544444443
Q ss_pred hhhhcccCCCCceEEEEeecccchHHHH
Q 014666 337 KDSALKSNGQGFQTILVTAAIAEMLGEQ 364 (420)
Q Consensus 337 ~~~~~~~~~~~~Q~v~~SATl~~~v~~~ 364 (420)
.. .++|+++||||+++.+..+
T Consensus 121 ~~-------~~~~~l~~SAT~~~~~~~~ 141 (431)
T 2v6i_A 121 SM-------GDAGAIFMTATPPGTTEAF 141 (431)
T ss_dssp HT-------TSCEEEEEESSCTTCCCSS
T ss_pred hC-------CCCcEEEEeCCCCcchhhh
Confidence 21 4789999999999865433
No 71
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.73 E-value=4.6e-18 Score=178.09 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=96.4
Q ss_pred CCcHHHHhhHHHHhc----C-CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 163 VPSEIQCVGIPAVLN----G-KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~----g-~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.|+++|..+++.++. | ++++++++||||||++++. ++..+++ ..- .......++++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~-----------------~~~-~~~~~~~~~~v 238 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWS-----------------ARW-NRTGDYRKPRI 238 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHH-----------------TTC-CSSCSSSCCCE
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHh-----------------ccc-ccccccCCCeE
Confidence 699999999998775 4 6699999999999999544 4442221 100 00011256789
Q ss_pred EEEcCcHHHHHHHH-HHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhc----CcccCCCceEE
Q 014666 238 IVLCTTEESADQGF-HMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED----RNVSCDDIRYV 312 (420)
Q Consensus 238 Lil~PtreLa~Qi~-~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~----~~~~l~~l~~l 312 (420)
|||+||++|+.|++ +.+..++ ..+..+.++ ....+.+|+|+||++|...+.. ..+....+++|
T Consensus 239 lil~P~~~L~~Q~~~~~~~~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lv 306 (590)
T 3h1t_A 239 LFLADRNVLVDDPKDKTFTPFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLI 306 (590)
T ss_dssp EEEEC-----------CCTTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEE
T ss_pred EEEeCCHHHHHHHHHHHHHhcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEE
Confidence 99999999999988 6666543 233333332 2345689999999999887652 23456779999
Q ss_pred EecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhhc
Q 014666 313 VLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 313 VlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
||||||++...+ ...+..++..++ ..++++||||.......-...++..
T Consensus 307 IiDEaH~~~~~~-~~~~~~il~~~~---------~~~~l~lTATP~~~~~~~~~~~f~~ 355 (590)
T 3h1t_A 307 IIDECHRGSARD-NSNWREILEYFE---------PAFQIGMTATPLREDNRDTYRYFGN 355 (590)
T ss_dssp EESCCC----------CHHHHHHST---------TSEEEEEESSCSCTTTHHHHHHSCS
T ss_pred EEECCccccccc-hHHHHHHHHhCC---------cceEEEeccccccccchhHHHHcCC
Confidence 999999997543 345677777775 4689999999875444333344433
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.71 E-value=2.7e-17 Score=180.48 Aligned_cols=168 Identities=13% Similarity=0.123 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHCC-------CCCCcHHHHhhHHHHhc--------------CCcEEEEccCCCCchhHhHHHHHHHhhhh
Q 014666 148 LKAEMIKAVEKMG-------LFVPSEIQCVGIPAVLN--------------GKSVVLSSGSGSGRTLAYLLPLVQVYSQL 206 (420)
Q Consensus 148 l~~~l~~~l~~~g-------~~~pt~iQ~~~i~~i~~--------------g~dvl~~a~TGsGKTla~~lp~l~~i~~~ 206 (420)
=++.++..+..+- ...|+|+|..|++.++. +++.+++++||||||+++ ++++..+..
T Consensus 249 ~~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~- 326 (1038)
T 2w00_A 249 QKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE- 326 (1038)
T ss_dssp SHHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-
T ss_pred chHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-
Confidence 3456666776642 23599999999998765 478999999999999997 666652210
Q ss_pred hhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh-cCCC
Q 014666 207 DEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS-NAPI 285 (420)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l-~~~~ 285 (420)
.....++|||||+++|+.|+...+..++.. .+.++.+.......+ ..++
T Consensus 327 ------------------------~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~ 376 (1038)
T 2w00_A 327 ------------------------LDFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDN 376 (1038)
T ss_dssp ------------------------CTTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSC
T ss_pred ------------------------cCCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCC
Confidence 113468999999999999999988887642 234555555555555 3568
Q ss_pred cEEEeChhHHHhchhcCc--ccCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 286 GMLIATPSEVLQHIEDRN--VSCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 286 ~IlV~TP~~L~~~l~~~~--~~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
+|+|+||++|..++.... ..+....+||+||||++.. +.....|+..++ +.++++||||+..
T Consensus 377 ~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p---------~a~~lgfTATP~~ 440 (1038)
T 2w00_A 377 KIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFK---------RYYQFGFTGTPIF 440 (1038)
T ss_dssp CEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCS---------SEEEEEEESSCCC
T ss_pred CEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHHhCC---------cccEEEEeCCccc
Confidence 999999999999876532 2456789999999999874 334556666664 5799999999874
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.71 E-value=3.3e-17 Score=170.16 Aligned_cols=131 Identities=20% Similarity=0.093 Sum_probs=104.0
Q ss_pred CCCCCcHHHHhhHH----HHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCC
Q 014666 160 GLFVPSEIQCVGIP----AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHP 235 (420)
Q Consensus 160 g~~~pt~iQ~~~i~----~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 235 (420)
|| .|+|.|.+++. ++..|+|++++||||+|||++|++|++. .++
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------------------------------~~~ 48 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------------------------------VKP 48 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------------------------------HCS
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------------------------------CCC
Confidence 45 68999999766 4568999999999999999999999987 256
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCCh---------------------------------HHH-----
Q 014666 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS---------------------------------KAL----- 277 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~---------------------------------~~~----- 277 (420)
++||++||++|+.|+.+.+..+....++++..+.|+.+. ...
T Consensus 49 ~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~ 128 (551)
T 3crv_A 49 KVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLK 128 (551)
T ss_dssp EEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHH
Confidence 899999999999999999999887778888877764321 011
Q ss_pred -------------HHHhcCCCcEEEeChhHHHhchhcCcccC-CCceEEEecCcchhhc
Q 014666 278 -------------EDVSNAPIGMLIATPSEVLQHIEDRNVSC-DDIRYVVLDEADTLFD 322 (420)
Q Consensus 278 -------------~~~l~~~~~IlV~TP~~L~~~l~~~~~~l-~~l~~lVlDEaD~~l~ 322 (420)
.+.....++|||+|++.|.+...+..+.+ ....+|||||||.|.+
T Consensus 129 ~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 129 KDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 12223467999999999999865543333 4678999999999987
No 74
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.68 E-value=5.1e-17 Score=171.33 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=112.1
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhh
Q 014666 143 FQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLR 222 (420)
Q Consensus 143 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~ 222 (420)
|..+. ..+.++++.+++ .|..| ......++|+|++++||||||||+ +++..+..
T Consensus 125 fp~~e-~~d~l~~i~dl~--~p~~~--~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~----------------- 178 (677)
T 3rc3_A 125 FPVLD-CKDDLRKISDLR--IPPNW--YPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFS----------------- 178 (677)
T ss_dssp CGGGG-CHHHHHHHTBCC--CGGGG--CHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHH-----------------
T ss_pred CCCcC-CHHHHHHHhhcc--Chhhh--CHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHh-----------------
Confidence 44444 444445554443 34433 333445689999999999999998 33332211
Q ss_pred hhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcC
Q 014666 223 RDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDR 302 (420)
Q Consensus 223 ~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~ 302 (420)
...++|++|||+||.|++..+... ++.+..++|+.. ++|+|||++.+++...
T Consensus 179 -----------~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~-------------~iv~TpGr~~~il~~T 230 (677)
T 3rc3_A 179 -----------AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEER-------------VTVQPNGKQASHVSCT 230 (677)
T ss_dssp -----------SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCE-------------ECCSTTCCCCSEEEEE
T ss_pred -----------cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCee-------------EEecCCCcccceeEec
Confidence 134699999999999999998775 677888888653 3445555554444321
Q ss_pred --cc-cCCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHH
Q 014666 303 --NV-SCDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSL 368 (420)
Q Consensus 303 --~~-~l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~ 368 (420)
.+ ....+++|||||||+|++.+|+..+..++..++. ...|++++|||.+ .+..++...
T Consensus 231 ~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~-------~~i~il~~SAT~~-~i~~l~~~~ 291 (677)
T 3rc3_A 231 VEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCA-------EEVHLCGEPAAID-LVMELMYTT 291 (677)
T ss_dssp GGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCE-------EEEEEEECGGGHH-HHHHHHHHH
T ss_pred HhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCc-------cceEEEeccchHH-HHHHHHHhc
Confidence 11 2467899999999999999999999999988863 3789999999953 344444433
No 75
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.60 E-value=8.5e-16 Score=159.09 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=89.1
Q ss_pred CCCCCCcHHHHhhHH----HHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCC
Q 014666 159 MGLFVPSEIQCVGIP----AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH 234 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~----~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (420)
.|| .|+|+|.+++. ++..|++++++||||+|||++|++|++. .+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~-------------------------------~~ 51 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ-------------------------------LK 51 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH-------------------------------HT
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh-------------------------------CC
Confidence 477 79999999865 4568999999999999999999999976 24
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCCh--------H-------------------------------
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS--------K------------------------------- 275 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~--------~------------------------------- 275 (420)
+++||++||++|+.|+...+..+ ++++..+.|.... .
T Consensus 52 ~~~~~~~~t~~l~~q~~~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~ 127 (540)
T 2vl7_A 52 KKVLIFTRTHSQLDSIYKNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFK 127 (540)
T ss_dssp CEEEEEESCHHHHHHHHHHHGGG----TCCEEEC----------------------------------------------
T ss_pred CcEEEEcCCHHHHHHHHHHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHh
Confidence 68999999999999999877764 4444444432210 0
Q ss_pred --------HHHHHhcCCCcEEEeChhHHHhchhcCcc-------cCCCceEEEecCcchhhc
Q 014666 276 --------ALEDVSNAPIGMLIATPSEVLQHIEDRNV-------SCDDIRYVVLDEADTLFD 322 (420)
Q Consensus 276 --------~~~~~l~~~~~IlV~TP~~L~~~l~~~~~-------~l~~l~~lVlDEaD~~l~ 322 (420)
...+.....++|||+|+..|.+....+.+ .+....++||||||.|.+
T Consensus 128 ~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 128 DAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp -----------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred hhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 00011123469999999999986544332 245688999999999943
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.50 E-value=8.4e-14 Score=142.61 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=106.8
Q ss_pred CCcHHHHhhHHHH----hcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 163 VPSEIQCVGIPAV----LNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 163 ~pt~iQ~~~i~~i----~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.|+|+|.+++..+ ..|+++|++.+||+|||++++..+.. +.. .....++|
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~-------------------------~~~~~~~L 90 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKK-------------------------ENELTPSL 90 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHH-------------------------TTCCSSEE
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHh-------------------------cCCCCCEE
Confidence 6999999999876 46889999999999999996544433 110 11245799
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcc
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD 318 (420)
||||+ .|+.|....+..+.. ++++.++.|+... .....++|+|+|++.+..... +....+++||+||||
T Consensus 91 Iv~P~-~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH 159 (500)
T 1z63_A 91 VICPL-SVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQ 159 (500)
T ss_dssp EEECS-TTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGG
T ss_pred EEccH-HHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCcc
Confidence 99995 588999999988764 4666666665422 122347999999999977654 334568999999999
Q ss_pred hhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 319 TLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 319 ~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
++.+.+ ......+..++ ..+.+++|||..
T Consensus 160 ~~kn~~--~~~~~~l~~l~---------~~~~l~LTaTP~ 188 (500)
T 1z63_A 160 NIKNPQ--TKIFKAVKELK---------SKYRIALTGTPI 188 (500)
T ss_dssp GGSCTT--SHHHHHHHTSC---------EEEEEEECSSCS
T ss_pred ccCCHh--HHHHHHHHhhc---------cCcEEEEecCCC
Confidence 996544 23445555553 457899999974
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.37 E-value=8.7e-13 Score=145.13 Aligned_cols=160 Identities=15% Similarity=0.050 Sum_probs=106.9
Q ss_pred CCCcHHHHhhHHHHhc--CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEE
Q 014666 162 FVPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIV 239 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~--g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Li 239 (420)
..|+|+|..++..++. +.++|++++||+|||++++..+...+. .....++||
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~--------------------------~g~~~rvLI 205 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLL--------------------------SGAAERVLI 205 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHH--------------------------TSSCCCEEE
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHH--------------------------hCCCCeEEE
Confidence 3689999999998775 458999999999999998777765221 112346999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHH--HhcCCCcEEEeChhHHHhchhc-CcccCCCceEEEecC
Q 014666 240 LCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALED--VSNAPIGMLIATPSEVLQHIED-RNVSCDDIRYVVLDE 316 (420)
Q Consensus 240 l~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~--~l~~~~~IlV~TP~~L~~~l~~-~~~~l~~l~~lVlDE 316 (420)
|||+ .|+.|....+.... ++.+..+.|+........ ......+|+|+|++.|...... ..+...++++|||||
T Consensus 206 VvP~-sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDE 281 (968)
T 3dmq_A 206 IVPE-TLQHQWLVEMLRRF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDE 281 (968)
T ss_dssp ECCT-TTHHHHHHHHHHHS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECC
T ss_pred EeCH-HHHHHHHHHHHHHh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehh
Confidence 9999 99999888775543 566665544332211111 1122468999999998764332 234456789999999
Q ss_pred cchhhccCCH-HHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 317 ADTLFDRGFG-PEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 317 aD~~l~~~~~-~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
||++-..+.. .....++..+.. ...+++++|||.-
T Consensus 282 AH~~kn~~~~~s~~~~~l~~L~~-------~~~~~L~LTATPi 317 (968)
T 3dmq_A 282 AHHLVWSEDAPSREYQAIEQLAE-------HVPGVLLLTATPE 317 (968)
T ss_dssp SSCCCCBTTBCCHHHHHHHHHHT-------TCSSEEESCSSCS
T ss_pred hHhhcCCCCcchHHHHHHHHHhh-------cCCcEEEEEcCCc
Confidence 9999655422 112233333321 2457999999974
No 78
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.34 E-value=2.9e-12 Score=134.47 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=65.8
Q ss_pred CCcHHHHhhHH----HHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 163 VPSEIQCVGIP----AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 163 ~pt~iQ~~~i~----~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.|+|.|.+.+. .+..|+|++++||||+|||++|++|++.++.. .+++++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---------------------------~~~kvl 55 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---------------------------RKLKVL 55 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---------------------------HTCEEE
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---------------------------cCCeEE
Confidence 57899988875 56689999999999999999999999984421 246899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccC
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENG 270 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g 270 (420)
|++||++|+.|+.+.+..+....++++..+.|
T Consensus 56 i~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 56 YLVRTNSQEEQVIKELRSLSSTMKIRAIPMQG 87 (620)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred EECCCHHHHHHHHHHHHHHhhccCeEEEEEEC
Confidence 99999999999999999987766666655554
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.31 E-value=1e-11 Score=134.38 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=107.9
Q ss_pred CCcHHHHhhHHHHh----cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 163 VPSEIQCVGIPAVL----NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~----~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
.+.|+|..++..+. .|++.|++.+||.|||+..+..+...+.. ......+|
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~-------------------------~~~~~~~L 290 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFA-------------------------RRQNGPHI 290 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHH-------------------------HSCCSCEE
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHh-------------------------cCCCCCEE
Confidence 68899999998665 78999999999999999866655441110 01234589
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH------------hcCCCcEEEeChhHHHhchhcCcccC
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV------------SNAPIGMLIATPSEVLQHIEDRNVSC 306 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~------------l~~~~~IlV~TP~~L~~~l~~~~~~l 306 (420)
|||| ..|+.|....+..++. ++++.+.+|+......... ....++|+|+|++.+...... +..
T Consensus 291 IV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~ 365 (800)
T 3mwy_W 291 IVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGS 365 (800)
T ss_dssp EECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHT
T ss_pred EEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--Hhc
Confidence 9999 6778888888887753 6777777776654433221 123578999999999765432 222
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
....+|||||||++-. ....+...+..++ ....+++|||.
T Consensus 366 ~~w~~vIvDEaH~lkn--~~s~~~~~l~~l~---------~~~rl~LTgTP 405 (800)
T 3mwy_W 366 IKWQFMAVDEAHRLKN--AESSLYESLNSFK---------VANRMLITGTP 405 (800)
T ss_dssp SEEEEEEETTGGGGCC--SSSHHHHHHTTSE---------EEEEEEECSCC
T ss_pred CCcceeehhhhhhhcC--chhHHHHHHHHhh---------hccEEEeeCCc
Confidence 3578999999999943 3345555666554 34679999997
No 80
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.28 E-value=4e-11 Score=126.58 Aligned_cols=160 Identities=17% Similarity=0.229 Sum_probs=107.8
Q ss_pred CCcHHHHhhHHHHh---------cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCC
Q 014666 163 VPSEIQCVGIPAVL---------NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPM 233 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~---------~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 233 (420)
.+.|+|.+++..+. .+...|++.+||+|||+..+..+...+ +... .....
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~------------------~~~~---~~~p~ 113 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLL------------------KQSP---DCKPE 113 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHH------------------HCCT---TSSCS
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHH------------------HhCc---cccCC
Confidence 68999999998763 457799999999999998776665421 1100 01122
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHH---HHhc-----CCCcEEEeChhHHHhchhcCccc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALE---DVSN-----APIGMLIATPSEVLQHIEDRNVS 305 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~---~~l~-----~~~~IlV~TP~~L~~~l~~~~~~ 305 (420)
..++|||+|+ .|+.|....+..+... .+.+..++||....... ..+. ...+|+|+|++.+..... .+.
T Consensus 114 ~~~~LiV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~ 189 (644)
T 1z3i_X 114 IDKVIVVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLH 189 (644)
T ss_dssp CSCEEEEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTT
T ss_pred CCcEEEEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--Hhh
Confidence 3469999997 7888888888887654 45666666665432211 1111 247899999999876542 333
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
...+.+||+||||++-+. .......+..+. ....+++|||.-
T Consensus 190 ~~~~~~vI~DEaH~ikn~--~~~~~~al~~l~---------~~~rl~LTgTPi 231 (644)
T 1z3i_X 190 KGKVGLVICDEGHRLKNS--DNQTYLALNSMN---------AQRRVLISGTPI 231 (644)
T ss_dssp TSCCCEEEETTGGGCCTT--CHHHHHHHHHHC---------CSEEEEECSSCS
T ss_pred cCCccEEEEECceecCCh--hhHHHHHHHhcc---------cCcEEEEecCcc
Confidence 456789999999998543 334444555553 457899999973
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.14 E-value=2.2e-10 Score=119.19 Aligned_cols=130 Identities=19% Similarity=0.210 Sum_probs=100.9
Q ss_pred CCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEE
Q 014666 159 MGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAI 238 (420)
Q Consensus 159 ~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~L 238 (420)
+|+ .|+++|....-.+..|+ |....||+|||+++.+|++-.. ..|..+.
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnA----------------------------L~G~~vh 120 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNA----------------------------LIGKGVH 120 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHH----------------------------TTSSCEE
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHH----------------------------hcCCceE
Confidence 576 69999999999999988 9999999999999999997411 1456799
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCCceecccCC-----------------------------------------------
Q 014666 239 VLCTTEESADQGFHMAKFISHCARLDSSMENGG----------------------------------------------- 271 (420)
Q Consensus 239 il~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg----------------------------------------------- 271 (420)
||+||+.||.|-...+..+..++|+++++++..
T Consensus 121 VvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 200 (822)
T 3jux_A 121 LVTVNDYLARRDALWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAF 200 (822)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTT
T ss_pred EEeccHHHHHhHHHHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhc
Confidence 999999999999999999999999999998872
Q ss_pred ---CChHHHHHHhcCCCcEEEeChhHHH-hchhcC------cccCCCceEEEecCcchhh
Q 014666 272 ---VSSKALEDVSNAPIGMLIATPSEVL-QHIEDR------NVSCDDIRYVVLDEADTLF 321 (420)
Q Consensus 272 ---~~~~~~~~~l~~~~~IlV~TP~~L~-~~l~~~------~~~l~~l~~lVlDEaD~~l 321 (420)
+.... +.-...|||..||..-|- ++|+.. ......+.+.||||+|-+|
T Consensus 201 ~~~~~~~e--rr~aY~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 201 QVELKEIT--RKEAYLCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp CEECCBCC--HHHHHHSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred cccCCHHH--HHHHhcCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 11111 111234799999998762 333321 2234668999999999875
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.07 E-value=3.3e-10 Score=118.65 Aligned_cols=145 Identities=20% Similarity=0.231 Sum_probs=92.8
Q ss_pred cHHHHhhHHHHhcCCcEEEEccCCCCch--hHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 165 SEIQCVGIPAVLNGKSVVLSSGSGSGRT--LAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 165 t~iQ~~~i~~i~~g~dvl~~a~TGsGKT--la~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
+++|+.+++.++.++++++.|++||||| ++++++++..+. ...+.++++++|
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--------------------------~~~~~~vll~AP 204 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--------------------------DGERCRIRLAAP 204 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC--------------------------SSCCCCEEEEBS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh--------------------------hcCCCeEEEEeC
Confidence 7999999999999999999999999999 667888776210 123568999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCc-EEEeChhHHHhchhcCcccCCCceEEEecCcchhh
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIG-MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLF 321 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~-IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l 321 (420)
|..+|.++...+.......++...... +... .. ...+ ++-.+|+.. .+ .........+++||||||+ |+
T Consensus 205 Tg~AA~~L~e~~~~~~~~l~l~~~~~~-~~~~--~~----~Tih~ll~~~~~~~-~~-~~~~~~~l~~d~lIIDEAs-ml 274 (608)
T 1w36_D 205 TGKAAARLTESLGKALRQLPLTDEQKK-RIPE--DA----STLHRLLGAQPGSQ-RL-RHHAGNPLHLDVLVVDEAS-MI 274 (608)
T ss_dssp SHHHHHHHHHHHTHHHHHSSCCSCCCC-SCSC--CC----BTTTSCC-------------CTTSCCSCSEEEECSGG-GC
T ss_pred ChhHHHHHHHHHHHHHhcCCCCHHHHh-ccch--hh----hhhHhhhccCCCch-HH-HhccCCCCCCCEEEEechh-hC
Confidence 999999998888776655554322211 0000 00 0011 122233321 11 1111122368999999999 66
Q ss_pred ccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 322 DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 322 ~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
+ ...+..|+..++. +.|+|++.-.
T Consensus 275 ~---~~~~~~Ll~~l~~--------~~~liLvGD~ 298 (608)
T 1w36_D 275 D---LPMMSRLIDALPD--------HARVIFLGDR 298 (608)
T ss_dssp B---HHHHHHHHHTCCT--------TCEEEEEECT
T ss_pred C---HHHHHHHHHhCCC--------CCEEEEEcch
Confidence 5 5677888887763 6799998644
No 83
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.98 E-value=4.3e-05 Score=77.03 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=48.7
Q ss_pred HHHCCCCCCcHHHHhhHHHHhcC-----CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCC
Q 014666 156 VEKMGLFVPSEIQCVGIPAVLNG-----KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPM 230 (420)
Q Consensus 156 l~~~g~~~pt~iQ~~~i~~i~~g-----~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 230 (420)
..-+.|..+++-|..++..++.. ..+++.|+.|||||... ..++..+...
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~------------------------ 72 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST------------------------ 72 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT------------------------
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc------------------------
Confidence 34456888999999999876432 38999999999999653 3344322110
Q ss_pred CCCCCeEEEEcCcHHHHHHHHHHH
Q 014666 231 KPMHPRAIVLCTTEESADQGFHMA 254 (420)
Q Consensus 231 ~~~~~~~Lil~PtreLa~Qi~~~~ 254 (420)
....+++++||...|..+...+
T Consensus 73 --~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 73 --GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp --TCCCEEEEESSHHHHHHHHHHH
T ss_pred --CCceEEEecCcHHHHHHHHhhh
Confidence 1136899999998887765443
No 84
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.96 E-value=3.6e-05 Score=79.70 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=48.3
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.+++.|..++..+..+..+++.|+.|||||... ..++..+. ..+.++++++|
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~---------------------------~~g~~Vl~~Ap 240 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAE---------------------------SLGLEVGLCAP 240 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHH---------------------------HTTCCEEEEES
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHH---------------------------hcCCeEEEecC
Confidence 579999999999999999999999999999763 22332110 03457999999
Q ss_pred cHHHHHHHHHH
Q 014666 243 TEESADQGFHM 253 (420)
Q Consensus 243 treLa~Qi~~~ 253 (420)
|...|..+...
T Consensus 241 T~~Aa~~L~e~ 251 (574)
T 3e1s_A 241 TGKAARRLGEV 251 (574)
T ss_dssp SHHHHHHHHHH
T ss_pred cHHHHHHhHhh
Confidence 99998876543
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.84 E-value=0.00011 Score=77.11 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=53.2
Q ss_pred CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 161 ~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
+..+++.|..++..++.+.-+++.||+|||||.+..- ++..+.+ ..+.++|++
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~--------------------------~~~~~ilv~ 230 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR--------------------------QGNGPVLVC 230 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHT--------------------------SSSCCEEEE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHH--------------------------cCCCeEEEE
Confidence 4568999999999988888899999999999987433 3321110 134579999
Q ss_pred cCcHHHHHHHHHHHHHh
Q 014666 241 CTTEESADQGFHMAKFI 257 (420)
Q Consensus 241 ~PtreLa~Qi~~~~~~l 257 (420)
+||...|.++...+...
T Consensus 231 a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 231 APSNIAVDQLTEKIHQT 247 (624)
T ss_dssp ESSHHHHHHHHHHHHTT
T ss_pred eCcHHHHHHHHHHHHhc
Confidence 99999999988777653
No 86
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.82 E-value=6.2e-05 Score=79.20 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=50.4
Q ss_pred CCcHHHHhhHHHHhcCCc-EEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 163 VPSEIQCVGIPAVLNGKS-VVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~d-vl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
.+.+-|..|+..++..++ .||+||.|||||.+.+--+.+ + +. .+.++|+++
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~-l-----------------~~----------~~~~ILv~a 240 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQ-A-----------------VK----------QGLKVLCCA 240 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHH-H-----------------HH----------TTCCEEEEE
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHH-H-----------------Hh----------CCCeEEEEc
Confidence 467899999998887665 689999999999874433332 1 11 345799999
Q ss_pred CcHHHHHHHHHHHHHh
Q 014666 242 TTEESADQGFHMAKFI 257 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l 257 (420)
||..-|.++...+...
T Consensus 241 ~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 241 PSNIAVDNLVERLALC 256 (646)
T ss_dssp SSHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHhc
Confidence 9999998887776543
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00021 Score=76.77 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=53.4
Q ss_pred CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 161 ~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
+..+++.|..|+..++.+.-+++.||.|||||.+..- ++..+.+ . .+.++|++
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~-----------------~---------~~~~ILv~ 410 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSK-----------------I---------HKDRILVC 410 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHH-----------------H---------HCCCEEEE
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHh-----------------C---------CCCeEEEE
Confidence 4567899999999998877789999999999976433 2222211 0 13469999
Q ss_pred cCcHHHHHHHHHHHHHh
Q 014666 241 CTTEESADQGFHMAKFI 257 (420)
Q Consensus 241 ~PtreLa~Qi~~~~~~l 257 (420)
+||...|.++...+...
T Consensus 411 a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 411 APSNVAVDHLAAKLRDL 427 (802)
T ss_dssp ESSHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHhh
Confidence 99999999988887764
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.60 E-value=0.00031 Score=75.43 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=52.9
Q ss_pred CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 161 ~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
...+++.|..|+..++.+.-+++.||.|||||.+.. .++..+.. ..+.++|++
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~--------------------------~~~~~ilv~ 406 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLAR--------------------------QGNGPVLVC 406 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHT--------------------------TCSSCEEEE
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHH--------------------------cCCCcEEEE
Confidence 346799999999998888889999999999998643 33332211 134579999
Q ss_pred cCcHHHHHHHHHHHHHh
Q 014666 241 CTTEESADQGFHMAKFI 257 (420)
Q Consensus 241 ~PtreLa~Qi~~~~~~l 257 (420)
+||...|.++...+...
T Consensus 407 a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 407 APSNIAVDQLTEKIHQT 423 (800)
T ss_dssp ESSHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHh
Confidence 99999999887776543
No 89
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.29 E-value=0.00025 Score=74.78 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=52.3
Q ss_pred CCCCCcHHHHhhHHHHh----cCC-cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCC
Q 014666 160 GLFVPSEIQCVGIPAVL----NGK-SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMH 234 (420)
Q Consensus 160 g~~~pt~iQ~~~i~~i~----~g~-dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 234 (420)
+| .|++.|..+|..+. .|. ..++.+.||||||++++-.+-. . +
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~-~------------------------------~ 53 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEA-L------------------------------G 53 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHH-H------------------------------T
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHH-h------------------------------C
Confidence 66 89999999987554 343 5778899999999876643322 0 1
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhc
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISH 259 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~ 259 (420)
..+|||+|+..+|.|++..+..+..
T Consensus 54 ~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 54 RPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCEEEEecCHHHHHHHHHHHHHHCC
Confidence 2399999999999999999999853
No 90
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.26 E-value=0.00066 Score=66.51 Aligned_cols=72 Identities=10% Similarity=-0.018 Sum_probs=55.4
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.++|+|...+..+...+-+++..+-+.|||.+.+.-++..+. ...+..+++++|
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~--------------------------~~~g~~v~~vA~ 216 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVC--------------------------FNKDKAVGILAH 216 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHH--------------------------SSSSCEEEEEES
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHH--------------------------hCCCCeEEEEeC
Confidence 689999999987765677899999999999887665554221 013557999999
Q ss_pred cHHHHHHHHHHHHHhhcc
Q 014666 243 TEESADQGFHMAKFISHC 260 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~ 260 (420)
|+.-|..++..+..+...
T Consensus 217 t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 217 KGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999888877766543
No 91
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.96 E-value=0.0037 Score=64.90 Aligned_cols=73 Identities=10% Similarity=-0.020 Sum_probs=56.1
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.++|+|...+..+...+-+++..+-|+|||.+.+.-++..+.. ..+..+++++|
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~--------------------------~~~~~i~~va~ 216 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF--------------------------NKDKAVGILAH 216 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT--------------------------SSSCEEEEEES
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh--------------------------CCCCeEEEEEC
Confidence 5899999999877667789999999999998876544432211 12457999999
Q ss_pred cHHHHHHHHHHHHHhhccC
Q 014666 243 TEESADQGFHMAKFISHCA 261 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~ 261 (420)
|+..|..++..+..+....
T Consensus 217 t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 217 KGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp SHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHhC
Confidence 9999999888887766543
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.83 E-value=0.0014 Score=56.73 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|+.+++.||+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999654
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.72 E-value=0.0023 Score=53.92 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|..+++.+++|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6889999999999999653
No 94
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.54 E-value=0.00085 Score=70.68 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=49.9
Q ss_pred cccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhcc--CCHHHHHHHHHHchhhhc---
Q 014666 267 MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR--GFGPEISKILNPLKDSAL--- 341 (420)
Q Consensus 267 ~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~--~~~~~l~~Il~~l~~~~~--- 341 (420)
.+.|+.++..+...+..+ +||++|++++..+. +|||||+|+|++. +++..+...+..+.....
T Consensus 302 ~~~G~e~~~~~~~~~~~g-----~tpg~LlDyl~~~~-------llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp 369 (661)
T 2d7d_A 302 FCSGIENYSRHLTLRPPG-----STPYTLLDYFPDDF-------MIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLP 369 (661)
T ss_dssp CCTTGGGGHHHHTTCCTT-----CCCBCGGGGSCSSC-------EEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred eeccchhHHHHHccccCC-----CCccHHHHHcccCc-------EEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccch
Confidence 445666666666555554 89999999986542 8999999998743 233332222111110000
Q ss_pred -----------ccCCCCceEEEEeecccchH
Q 014666 342 -----------KSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 342 -----------~~~~~~~Q~v~~SATl~~~v 361 (420)
.......|+++||||++...
T Consensus 370 ~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~ 400 (661)
T 2d7d_A 370 SALDNRPLRFEEFEKHMHNIVYVSATPGPYE 400 (661)
T ss_dssp GGGGSCCCCHHHHHHTCSEEEEECSSCCHHH
T ss_pred hhhhcccccHHHHhccCCCEEEEecCCChhH
Confidence 00013679999999998654
No 95
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.14 E-value=0.062 Score=46.70 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=16.7
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
.|+=.++.++.|+|||...+-
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS 22 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHH
Confidence 356678999999999987543
No 96
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.96 E-value=0.019 Score=57.02 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=51.3
Q ss_pred cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHhhc
Q 014666 180 SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFISH 259 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l~~ 259 (420)
=.++.|+.|+|||..+.- ++. ....+|++||++++..+.+.+...
T Consensus 163 v~~I~G~aGsGKTt~I~~-~~~--------------------------------~~~~lVlTpT~~aa~~l~~kl~~~-- 207 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS-RVN--------------------------------FEEDLILVPGRQAAEMIRRRANAS-- 207 (446)
T ss_dssp EEEEEECTTSCHHHHHHH-HCC--------------------------------TTTCEEEESCHHHHHHHHHHHTTT--
T ss_pred EEEEEcCCCCCHHHHHHH-Hhc--------------------------------cCCeEEEeCCHHHHHHHHHHhhhc--
Confidence 468999999999986422 111 023699999999998876655321
Q ss_pred cCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhccCC
Q 014666 260 CARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRGF 325 (420)
Q Consensus 260 ~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~~ 325 (420)
+.. ....+-|.|-..++.. ......-..++||||||- |++.+.
T Consensus 208 --~~~------------------~~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~s-m~~~~~ 250 (446)
T 3vkw_A 208 --GII------------------VATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGL-MLHTGC 250 (446)
T ss_dssp --SCC------------------CCCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGG-GSCHHH
T ss_pred --Ccc------------------ccccceEEEeHHhhcC--CCCCCCCcCCEEEEeCcc-cCCHHH
Confidence 100 0011224465554322 122222347899999997 554443
No 97
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.93 E-value=0.0032 Score=66.34 Aligned_cols=83 Identities=16% Similarity=0.033 Sum_probs=48.5
Q ss_pred cccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhcc--CCHHHHHHHHHHchhh-----
Q 014666 267 MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDR--GFGPEISKILNPLKDS----- 339 (420)
Q Consensus 267 ~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~--~~~~~l~~Il~~l~~~----- 339 (420)
.+.|+.++..+......+ +||++|++++..+ .+|||||+|+|++. +++......+..+...
T Consensus 296 ~~~Gie~y~~~~~~~~~g-----~tp~~LlDyl~~~-------~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp 363 (664)
T 1c4o_A 296 TCPGVENYARYFTGKAPG-----EPPYTLLDYFPED-------FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLP 363 (664)
T ss_dssp CCTTGGGGHHHHHTCCTT-----SCCCCGGGGSCTT-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred ccCchHHHHHHHhcccCC-----CCchHHHHHHhhc-------cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccch
Confidence 445555666655555444 8999999998543 38999999998743 1222222221111100
Q ss_pred --hc-------ccCCCCceEEEEeecccchH
Q 014666 340 --AL-------KSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 340 --~~-------~~~~~~~Q~v~~SATl~~~v 361 (420)
.. .......|+++||||++...
T Consensus 364 ~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~ 394 (664)
T 1c4o_A 364 SALDNRPLRFEEFLERVSQVVFVSATPGPFE 394 (664)
T ss_dssp GGGGSSCCCHHHHHHTCSEEEEEESSCCHHH
T ss_pred hhhhcCcccHHHHHhhcCCEEEEecCCCHHH
Confidence 00 00013579999999998643
No 98
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.83 E-value=0.02 Score=59.69 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=75.1
Q ss_pred CCcHHHHhhHHHHhc--CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEE
Q 014666 163 VPSEIQCVGIPAVLN--GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVL 240 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~--g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil 240 (420)
.+|.-|+.++..+.. ..-.++.|+-|.|||.+..+.+-.. ...++|.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-------------------------------~~~~~vt 223 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-------------------------------AGRAIVT 223 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-------------------------------SSCEEEE
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-------------------------------HhCcEEE
Confidence 689999999988775 2347999999999997766655441 0136999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchh
Q 014666 241 CTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 241 ~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~ 320 (420)
+||.+-+..+++.... .|-...|..+... +...++||||||=.+
T Consensus 224 AP~~~a~~~l~~~~~~-----------------------------~i~~~~Pd~~~~~-------~~~~dlliVDEAAaI 267 (671)
T 2zpa_A 224 APAKASTDVLAQFAGE-----------------------------KFRFIAPDALLAS-------DEQADWLVVDEAAAI 267 (671)
T ss_dssp CSSCCSCHHHHHHHGG-----------------------------GCCBCCHHHHHHS-------CCCCSEEEEETGGGS
T ss_pred CCCHHHHHHHHHHhhC-----------------------------CeEEeCchhhhhC-------cccCCEEEEEchhcC
Confidence 9999987765544221 0112256554322 345889999999865
Q ss_pred hccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 321 FDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 321 l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
-.+.+..++. ....++||.|+.
T Consensus 268 ----p~pll~~ll~------------~~~~v~~~tTv~ 289 (671)
T 2zpa_A 268 ----PAPLLHQLVS------------RFPRTLLTTTVQ 289 (671)
T ss_dssp ----CHHHHHHHHT------------TSSEEEEEEEBS
T ss_pred ----CHHHHHHHHh------------hCCeEEEEecCC
Confidence 2566666665 234577778874
No 99
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.63 E-value=0.024 Score=49.75 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCCCchhHhHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~ 199 (420)
.|+=.++.+++|||||.+.+--+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a 29 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRI 29 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 35567889999999997755433
No 100
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.54 E-value=0.019 Score=60.33 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=49.4
Q ss_pred CCcHHHHhhHHHHh----cCC-cEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeE
Q 014666 163 VPSEIQCVGIPAVL----NGK-SVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRA 237 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~----~g~-dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (420)
.|+.-|..+|..+. .|. ..++.+-||||||++.+--+-. . +..+
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~-~------------------------------~~~~ 60 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKE-V------------------------------NKPT 60 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHH-H------------------------------CCCE
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHH-h------------------------------CCCE
Confidence 68888988877543 343 4778899999999876533322 0 1138
Q ss_pred EEEcCcHHHHHHHHHHHHHhhc
Q 014666 238 IVLCTTEESADQGFHMAKFISH 259 (420)
Q Consensus 238 Lil~PtreLa~Qi~~~~~~l~~ 259 (420)
|||+|+..+|.|++..++.+..
T Consensus 61 lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 61 LVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp EEECSSHHHHHHHHHHHHHHCT
T ss_pred EEEECCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999853
No 101
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.35 E-value=0.065 Score=53.11 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=38.5
Q ss_pred CCceEEEecCcchhh---ccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHHHHHHHhh
Q 014666 307 DDIRYVVLDEADTLF---DRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGEQLSSLME 370 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l---~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~~~~~~~~ 370 (420)
...+++|||.+-++- +..+..++..+...+. ++.-+++++|+...+....+..|..
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~--------pd~vlLVlDa~~gq~a~~~a~~f~~ 236 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK--------PDDVILVIDASIGQKAYDLASRFHQ 236 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC--------CSEEEEEEEGGGGGGGHHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC--------CcceEEEEeCccchHHHHHHHHHhc
Confidence 467889999987642 3345666777666653 3556788888888777777766663
No 102
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.34 E-value=0.062 Score=49.66 Aligned_cols=53 Identities=13% Similarity=0.215 Sum_probs=32.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHH-HhhHHH--HhcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQ-CVGIPA--VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ-~~~i~~--i~~g~dvl~~a~TGsGKTla~ 195 (420)
...|+++.-.+.+++.|...-. .+.+ ...+.. +..++.+++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3468888877777777765310 1111 111111 234678999999999999653
No 103
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.32 E-value=0.028 Score=58.66 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=51.2
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
..+++-|.+++.. .+..++|.|+.|||||.+.+-=+...+ ... .....++|+++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~------------------~~~------~~~~~~iL~lt 61 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLM------------------SVE------NCSPYSIMAVT 61 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHH------------------HTS------CCCGGGEEEEE
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHH------------------HhC------CCChhhEEEEe
Confidence 3689999999973 356799999999999987554443311 100 01223699999
Q ss_pred CcHHHHHHHHHHHHHhh
Q 014666 242 TTEESADQGFHMAKFIS 258 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l~ 258 (420)
+|+..|.++...+..+.
T Consensus 62 ft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 62 FTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999988887763
No 104
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.24 E-value=0.051 Score=48.87 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=22.6
Q ss_pred EEEeChhHHHhchhcCcccCCCceEEEecCcchh
Q 014666 287 MLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 287 IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~ 320 (420)
+.+.+...+++.+..... -...++|||||++.+
T Consensus 69 ~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 69 VEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp EEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred cccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 345677778777764322 245789999999864
No 105
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.14 E-value=0.21 Score=45.78 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=14.8
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
..+++.||+|+|||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999753
No 106
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.10 E-value=0.035 Score=52.60 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999653
No 107
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.73 E-value=0.038 Score=58.15 Aligned_cols=70 Identities=11% Similarity=-0.009 Sum_probs=50.5
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.+++-|..++.. .+..++|.|+.|||||.+..-=+...+.. . .....++|+|+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~------------------~------~~~~~~IL~lTf 55 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRG------------------C------GYQARHIAAVTF 55 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHH------------------H------CCCGGGEEEEES
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHh------------------c------CCCHHHeEEEec
Confidence 478999999875 36789999999999998755444432111 0 012246999999
Q ss_pred cHHHHHHHHHHHHHhh
Q 014666 243 TEESADQGFHMAKFIS 258 (420)
Q Consensus 243 treLa~Qi~~~~~~l~ 258 (420)
|+..|.++...+....
T Consensus 56 T~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 56 TNKAAREMKERVGQTL 71 (673)
T ss_dssp SHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHc
Confidence 9999999888887653
No 108
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.70 E-value=0.036 Score=49.45 Aligned_cols=19 Identities=26% Similarity=0.200 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4688999999999999753
No 109
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.63 E-value=0.1 Score=50.06 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4578999999999999753
No 110
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.58 E-value=0.056 Score=50.55 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+.++++.||+|+|||...
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999753
No 111
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.15 Score=48.29 Aligned_cols=44 Identities=7% Similarity=0.118 Sum_probs=26.9
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
...-++||||+|.|.+ .+.+..+++.... .....-+|+.++|+.
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~-----~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISS-----KNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHC-----SSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccc-----cCCcEEEEEEecCcc
Confidence 3456899999999972 3444455543211 123566777788874
No 112
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.41 E-value=0.081 Score=49.94 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=12.7
Q ss_pred CCceEEEecCcchhh
Q 014666 307 DDIRYVVLDEADTLF 321 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l 321 (420)
...++|||||+|.|.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 367899999999885
No 113
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.40 E-value=0.45 Score=45.23 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=24.3
Q ss_pred CcHHHHhhHHHHh----cCC---cEEEEccCCCCchhHhH
Q 014666 164 PSEIQCVGIPAVL----NGK---SVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 164 pt~iQ~~~i~~i~----~g~---dvl~~a~TGsGKTla~~ 196 (420)
.+|||..++..+. .|+ -+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4688888876543 443 48999999999996543
No 114
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.20 E-value=0.71 Score=44.75 Aligned_cols=53 Identities=11% Similarity=0.138 Sum_probs=30.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHH-HhhHH-HHhcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQ-CVGIP-AVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ-~~~i~-~i~~g~dvl~~a~TGsGKTla~ 195 (420)
...|+++.=...+++.|...-. .+.. ...+. ....++.+|+.|++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVI---LPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHH---HhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3468888766777776654310 0000 00000 0123578999999999999653
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.10 E-value=0.17 Score=45.02 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=17.0
Q ss_pred CCcEEEEccCCCCchhHhHHHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
|+=.++.++.|+|||.+.+--+..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r 51 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRR 51 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 444678899999999875544443
No 116
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.03 E-value=0.071 Score=53.04 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+..+++.||+|+|||...
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999653
No 117
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.96 E-value=0.076 Score=59.82 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=52.2
Q ss_pred CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 163 VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 163 ~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
.+|+-|..+|..- +.+++|.|..|||||.+.+-=++..+... . .....-++|+|++
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~------------------~----~~~~~~~il~~Tf 65 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAE------------------E----NPIDVDRLLVVTF 65 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCS------------------S----SCCCGGGEEEECS
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcC------------------C----CCCCccceEEEec
Confidence 5799999998754 88999999999999988655555422210 0 0112346999999
Q ss_pred cHHHHHHHHHHHHHh
Q 014666 243 TEESADQGFHMAKFI 257 (420)
Q Consensus 243 treLa~Qi~~~~~~l 257 (420)
|+..|..+.+.+...
T Consensus 66 t~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 66 TNASAAEMKHRIAEA 80 (1232)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999988877663
No 118
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.90 E-value=0.48 Score=44.67 Aligned_cols=50 Identities=10% Similarity=0.224 Sum_probs=32.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHH-----hcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV-----LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i-----~~g~dvl~~a~TGsGKTla~ 195 (420)
...|+++.-...+.+.|.+.-. .|.. .|.+ ...+.+++.||+|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPVK---FPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHH---CGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHHh---CHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3569999888888887765311 1111 1111 12367999999999999753
No 119
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.83 E-value=0.3 Score=46.46 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=27.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
.+|+++--...+.+.|...-+.. .....+++.||+|+|||...
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP------------RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT------------TCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC------------CCCCeEEEECCCCCCHHHHH
Confidence 35777666777777776532110 12234999999999999753
No 120
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.79 E-value=0.13 Score=54.52 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=50.0
Q ss_pred CCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEc
Q 014666 162 FVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLC 241 (420)
Q Consensus 162 ~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~ 241 (420)
..+++-|.+++.. .+..++|.|+.|||||.+..-=+...+ ... .....++|+|+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll------------------~~~------~~~p~~IL~vT 63 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLM------------------AEK------HVAPWNILAIT 63 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHH------------------HTT------CCCGGGEEEEE
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHH------------------Hhc------CCCHHHeEEEe
Confidence 3689999999875 356899999999999987554444311 100 11224699999
Q ss_pred CcHHHHHHHHHHHHHh
Q 014666 242 TTEESADQGFHMAKFI 257 (420)
Q Consensus 242 PtreLa~Qi~~~~~~l 257 (420)
.|+..|.++...+..+
T Consensus 64 FTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 64 FTNKAAREMRERVQSL 79 (724)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999998888777665
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.77 E-value=0.18 Score=43.93 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
..+++.|++|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999753
No 122
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.74 E-value=0.37 Score=40.50 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=54.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.++|+..+..+...+... ++.+..++|+.+.......+ .....|||+|. .+ ..++++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcC
Confidence 457999999999999998888765 67889999998766544333 34578999993 22 245678888
Q ss_pred eEEEecC
Q 014666 310 RYVVLDE 316 (420)
Q Consensus 310 ~~lVlDE 316 (420)
+++|.-.
T Consensus 105 ~~Vi~~~ 111 (163)
T 2hjv_A 105 SLVINYD 111 (163)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8888644
No 123
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=93.62 E-value=0.49 Score=40.20 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=54.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.++++..|..+...+... ++.+..++|+.+.......+ .....|||+|. .+ ..++++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccC
Confidence 458999999999999988877654 67889999998876544333 34578999993 22 346778889
Q ss_pred eEEEec
Q 014666 310 RYVVLD 315 (420)
Q Consensus 310 ~~lVlD 315 (420)
.++|.=
T Consensus 104 ~~Vi~~ 109 (175)
T 2rb4_A 104 TIVVNF 109 (175)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 999853
No 124
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.58 E-value=0.27 Score=43.83 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCCchhHhHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~ 199 (420)
.|+=.++.++.|+|||...+--+
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~ 49 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL 49 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45667899999999997644333
No 125
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.55 E-value=0.21 Score=44.94 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=18.3
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.|+=.++.|+.|+|||.+.+--+..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r 42 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRR 42 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHH
Confidence 4666788899999999875544443
No 126
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.41 E-value=0.44 Score=45.08 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=31.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHh-----cCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVL-----NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~-----~g~dvl~~a~TGsGKTla~ 195 (420)
...|++++=...+.+.|.+.-. .|++ .|.+. ..+.+++.||+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3579999877777777764210 1111 01121 2368999999999999653
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.40 E-value=0.17 Score=48.58 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
++.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 457999999999999753
No 128
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.20 E-value=0.2 Score=47.85 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++.|++|+|||...
T Consensus 44 ~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCEEEEECTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 129
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.12 E-value=0.57 Score=40.51 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCchhH
Q 014666 179 KSVVLSSGSGSGRTLA 194 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla 194 (420)
..+++.|++|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999965
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.11 E-value=0.18 Score=48.41 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=14.4
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999764
No 131
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.03 E-value=0.33 Score=45.94 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=27.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHH----hcCCcEEEEccCCCCchhHh
Q 014666 142 SFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV----LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 142 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i----~~g~dvl~~a~TGsGKTla~ 195 (420)
+|.++--...+++.+.. ++... .....+++.|++|+|||...
T Consensus 27 ~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 57777666666665542 11111 12357999999999999753
No 132
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.88 E-value=0.81 Score=45.33 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCchhHhHH
Q 014666 179 KSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~l 197 (420)
.-+++++++|+|||....-
T Consensus 101 ~vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHH
Confidence 4588999999999987543
No 133
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.84 E-value=0.21 Score=43.81 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCCCchhHhHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~ 199 (420)
.|+=.++.++.|||||...+-.+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i 41 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRV 41 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHH
Confidence 36668899999999996544433
No 134
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.81 E-value=0.43 Score=41.43 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=54.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
++++||.++|+.-+..+...+... ++.+..++|+.+.......+ .....|||+|.- +. .++++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~-----~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDV-----AS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHH-----HH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCc-----hh-cCCCcccC
Confidence 357999999999999998888765 67888999998876544433 345789999942 22 35678888
Q ss_pred eEEEec
Q 014666 310 RYVVLD 315 (420)
Q Consensus 310 ~~lVlD 315 (420)
+++|.=
T Consensus 124 ~~VI~~ 129 (191)
T 2p6n_A 124 QHVINY 129 (191)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 888873
No 135
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.80 E-value=0.53 Score=39.56 Aligned_cols=73 Identities=12% Similarity=0.247 Sum_probs=54.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.++|+.-|..+...+... ++.+..++|+.+.......+ .....|||||.- + ..++++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~-~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----L-ARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----G-TTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----h-hcCCCcccC
Confidence 457999999999999988888764 67888999998866544333 345789999942 2 245678888
Q ss_pred eEEEecC
Q 014666 310 RYVVLDE 316 (420)
Q Consensus 310 ~~lVlDE 316 (420)
.++|.-+
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8888744
No 136
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.70 E-value=0.72 Score=46.68 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCchhHhH
Q 014666 178 GKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~ 196 (420)
.+.+++.||+|+|||....
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3689999999999997643
No 137
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=92.64 E-value=0.57 Score=41.32 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=54.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.++|+.-+..+...+... ++.+..++|+.+...+...+ ....+|||||. .+ ..++++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccC
Confidence 457999999999999988888765 77888999998876655443 34578999993 22 345778889
Q ss_pred eEEEe
Q 014666 310 RYVVL 314 (420)
Q Consensus 310 ~~lVl 314 (420)
.++|.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 138
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.50 E-value=0.67 Score=41.76 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=28.6
Q ss_pred cccccCCCCHHHHHHHHHCC--CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 141 SSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
.+|+++.-.+.+.+.|.++- +..|..+... .+...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 45777766666666665420 1111111100 0123467999999999999653
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.24 E-value=2.2 Score=37.13 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchhH
Q 014666 180 SVVLSSGSGSGRTLA 194 (420)
Q Consensus 180 dvl~~a~TGsGKTla 194 (420)
.+++.|++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999965
No 140
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.20 E-value=0.61 Score=39.20 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+..+++.|++|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 568999999999999653
No 141
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.13 E-value=1.1 Score=44.48 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=29.3
Q ss_pred CCceEEEecCcchhhcc-----CCHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 307 DDIRYVVLDEADTLFDR-----GFGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~-----~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
..+++||||+...|... +...++..++..|...... .++.+|++|-
T Consensus 312 ~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke---~~i~vi~~sq 362 (454)
T 2r6a_A 312 SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARE---LEVPVIALSQ 362 (454)
T ss_dssp TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHH---HTCCEEEEEC
T ss_pred cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hCCeEEEEec
Confidence 35899999999998743 2455667776666543321 1456666654
No 142
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.10 E-value=0.37 Score=45.31 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+.++++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 689999999999999653
No 143
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.67 E-value=0.16 Score=50.69 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
..+++.||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999754
No 144
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.29 E-value=0.72 Score=39.14 Aligned_cols=73 Identities=7% Similarity=0.033 Sum_probs=54.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.++++.-|..+...+... ++.+..++|+.........+ .....|||+|.. -..++++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhC
Confidence 457999999999999988888765 67888999998776544333 345789999952 2345677888
Q ss_pred eEEEecC
Q 014666 310 RYVVLDE 316 (420)
Q Consensus 310 ~~lVlDE 316 (420)
.++|.=+
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 8888643
No 145
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.28 E-value=0.63 Score=46.74 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=56.1
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
.|..+.+.+-||||||++..--+-. .+..+|||+|+...|.|++..+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~-------------------------------~~~p~lvv~~~~~~A~~l~~~l~~ 61 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAER-------------------------------HAGPVVLIAPDMQNALRLHDEISQ 61 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHH-------------------------------SSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHH-------------------------------hCCCEEEEeCCHHHHHHHHHHHHh
Confidence 4667889999999998764332211 122489999999999999999998
Q ss_pred hhccCCCceecccC-------CCChHH---------HHHHhcCCCcEEEeChhHHHhch
Q 014666 257 ISHCARLDSSMENG-------GVSSKA---------LEDVSNAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 257 l~~~~~i~~~~~~g-------g~~~~~---------~~~~l~~~~~IlV~TP~~L~~~l 299 (420)
+... .+..+-. ...... ..........|||+|...|+..+
T Consensus 62 ~~~~---~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~ 117 (483)
T 3hjh_A 62 FTDQ---MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 (483)
T ss_dssp TCSS---CEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCC
T ss_pred hCCC---cEEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcC
Confidence 8532 1222211 111110 11222345679999998876544
No 146
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.18 E-value=1.1 Score=44.39 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=28.0
Q ss_pred CceEEEecCcchhhcc--C-----CHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 308 DIRYVVLDEADTLFDR--G-----FGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~--~-----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
.+++||||....|... + ....+..++..|...... -++.+|++|-
T Consensus 310 ~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke---~~v~vi~lsq 361 (444)
T 2q6t_A 310 QVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARE---LGIPIIALSQ 361 (444)
T ss_dssp CCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHH---HTSCEEEEEE
T ss_pred CCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHH---hCCeEEEEec
Confidence 5889999999988643 1 234566666666543321 2566777664
No 147
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.06 E-value=1.7 Score=40.36 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
.+++.||+|+|||...
T Consensus 48 ~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAA 63 (327)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 6999999999999753
No 148
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.20 E-value=1.6 Score=37.66 Aligned_cols=121 Identities=11% Similarity=0.109 Sum_probs=75.2
Q ss_pred cHHHHhhHHHHhcC--CcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcC
Q 014666 165 SEIQCVGIPAVLNG--KSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCT 242 (420)
Q Consensus 165 t~iQ~~~i~~i~~g--~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~P 242 (420)
++-|..++..++.. +-.++.+.-|++|+...+--++..- ...|.++.||+|
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a---------------------------~~~Gr~V~vLAp 88 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA---------------------------REQGREVQIIAA 88 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH---------------------------HHTTCCEEEECS
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH---------------------------HhcCeEEEEEcC
Confidence 45688888887643 4577888899999988654444310 125678999999
Q ss_pred cHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcchhhc
Q 014666 243 TEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEADTLFD 322 (420)
Q Consensus 243 treLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~ 322 (420)
+..-.... ....++.-..+. ...+......|..=++||||||-.|-
T Consensus 89 ~~~s~~~l-------~~~~~l~~~t~t--------------------------~~~ll~~~~~~tp~s~lIVD~AekLS- 134 (189)
T 2l8b_A 89 DRRSQMNM-------KQDERLSGELIT--------------------------GRRQLLEGMAFTPGSTVIVDQGEKLS- 134 (189)
T ss_dssp TTHHHHHH-------SCTTTCSSCSSS--------------------------TTTTTTTSCCCCCCCEEEEEESSSHH-
T ss_pred chHHHHHH-------HhhcCcCcceee--------------------------hhhhhcCCCCCCCCCEEEEechhhcC-
Confidence 98876652 222222211110 01122222223344589999999885
Q ss_pred cCCHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 323 RGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 323 ~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
..++..++..-.. .+.|+|++--+
T Consensus 135 ---~kE~~~Lld~A~~-------~naqvvll~~~ 158 (189)
T 2l8b_A 135 ---LKETLTLLDGAAR-------HNVQVLITDSG 158 (189)
T ss_dssp ---HHHHHHHHHHHHH-------TTCCEEEEESS
T ss_pred ---HHHHHHHHHHHHh-------cCCEEEEeCCc
Confidence 6777777776654 46888888665
No 149
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.07 E-value=0.6 Score=40.21 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.++|+.-|..+...+... ++.+..++|+.+.......+ .....|||+|.- + ..++++..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-----A-ARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh-----h-hcCCCccc
Confidence 3567999999999999988888764 67888899987655433222 345789999942 2 23567788
Q ss_pred ceEEEe
Q 014666 309 IRYVVL 314 (420)
Q Consensus 309 l~~lVl 314 (420)
+.++|.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 888886
No 150
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.84 E-value=5.9 Score=38.56 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=21.0
Q ss_pred cccccccccCCCCHHHHHHHHHCCCCC
Q 014666 137 AEVVSSFQELGLKAEMIKAVEKMGLFV 163 (420)
Q Consensus 137 ~~~~~~f~~l~l~~~l~~~l~~~g~~~ 163 (420)
..++..+...||++..++.|.+.||..
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~t 106 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLHT 106 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCCB
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCCc
Confidence 345667777889999999998888864
No 151
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.66 E-value=0.99 Score=39.59 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCCCchhHhH
Q 014666 176 LNGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~ 196 (420)
..|.-+++.+++|+|||....
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHH
Confidence 356789999999999996533
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.32 E-value=0.78 Score=40.80 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.1
Q ss_pred hcCCcEEEEccCCCCchhHhH
Q 014666 176 LNGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~ 196 (420)
..|.-+++.|++|+|||...+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 356789999999999997643
No 153
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=89.14 E-value=1.7 Score=41.69 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.++++.-|..++..+... ++.+..++|+.........+ ....+|||||.- -..++++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV------CARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc------cccCCCccCC
Confidence 458999999999999998888775 67788999998876554433 345789999952 2356778899
Q ss_pred eEEEe
Q 014666 310 RYVVL 314 (420)
Q Consensus 310 ~~lVl 314 (420)
+++|.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99885
No 154
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.12 E-value=1.5 Score=41.23 Aligned_cols=17 Identities=18% Similarity=0.385 Sum_probs=14.5
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999653
No 155
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.09 E-value=0.79 Score=42.47 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=18.0
Q ss_pred HhcCCcEEEEccCCCCchhHhHH
Q 014666 175 VLNGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~~l 197 (420)
+..|.-+++.|++|+|||.....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHH
Confidence 34577899999999999975443
No 156
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=88.98 E-value=8.1 Score=36.45 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.++++.-|..++..+... ++.+..++|+.........+ ....+|||||. . -..++++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----V-LARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----G-GSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhcCCCccc
Confidence 3468999999999999988888765 67888899998866544433 34578999995 2 235678899
Q ss_pred ceEEEecCcch
Q 014666 309 IRYVVLDEADT 319 (420)
Q Consensus 309 l~~lVlDEaD~ 319 (420)
++++|.-....
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99999766553
No 157
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=88.98 E-value=1.1 Score=41.88 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.|+|+.-+..++..+... ++.+..++|+.+...+...+ ....+|||||. .+ ..++++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccce
Confidence 457999999999998888777653 78899999998876655443 34578999994 22 345677888
Q ss_pred eEEEe
Q 014666 310 RYVVL 314 (420)
Q Consensus 310 ~~lVl 314 (420)
.++|.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88874
No 158
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=88.74 E-value=1.6 Score=42.02 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=55.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.++|+..|..++..+... ++.+..++|+.........+ ....+|||||.- + ..++++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-----A-ARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH-----H-HTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh-----h-hcCCCccc
Confidence 4568999999999999988888764 67888999998866544333 345789999962 2 24677888
Q ss_pred ceEEEe
Q 014666 309 IRYVVL 314 (420)
Q Consensus 309 l~~lVl 314 (420)
++++|.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998886
No 159
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.59 E-value=0.5 Score=42.24 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=30.3
Q ss_pred CCceEEEecCcchhhc-----cCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccchH
Q 014666 307 DDIRYVVLDEADTLFD-----RGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEML 361 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~-----~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v 361 (420)
.+.++||+||.-.+++ ......+..++..+... + -+++++......+
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-------g-~tii~vtH~~~~~ 185 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-------G-VTTILTTEAPDPQ 185 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-------C-CEEEEEECCC---
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-------C-CeEEEEECCCCCC
Confidence 4678999999998886 34455577777776531 2 4667766665544
No 160
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.43 E-value=2.3 Score=40.07 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=18.0
Q ss_pred cCCcEEEEccCCCCchhHhHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l 200 (420)
.|.-+++.|++|+|||...+--+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH
Confidence 457799999999999975444333
No 161
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=88.27 E-value=2 Score=43.58 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=58.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.++|+.-|..++..+..... .++.+..++|+.........+ ....+|||||.- -..++++.+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch------hhcCCCccc
Confidence 456899999999999999998887643 267888899998876544433 356899999962 234677888
Q ss_pred ceEEEecCc
Q 014666 309 IRYVVLDEA 317 (420)
Q Consensus 309 l~~lVlDEa 317 (420)
+++||.-..
T Consensus 411 v~~VI~~~~ 419 (563)
T 3i5x_A 411 VHEVLQIGV 419 (563)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEECC
Confidence 999886543
No 162
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.12 E-value=0.44 Score=48.65 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|..+++.+|+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999653
No 163
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=87.95 E-value=2.4 Score=40.37 Aligned_cols=75 Identities=7% Similarity=0.043 Sum_probs=56.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.++++.-|..++..+... ++.+..++|+.........+ .....|||||. .+ ..++++..
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gidi~~ 318 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIER 318 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CC-SSCBCCTT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hh-hcCCCccc
Confidence 3568999999999999998888764 67788899988765544333 34578999994 22 34677889
Q ss_pred ceEEEecCc
Q 014666 309 IRYVVLDEA 317 (420)
Q Consensus 309 l~~lVlDEa 317 (420)
++++|.-..
T Consensus 319 ~~~Vi~~~~ 327 (391)
T 1xti_A 319 VNIAFNYDM 327 (391)
T ss_dssp EEEEEESSC
T ss_pred CCEEEEeCC
Confidence 999987544
No 164
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=87.64 E-value=2.3 Score=43.50 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=58.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.++|+.-|..++..+..... .++.+..++|+.........+ .....|||||.- -..++++.+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~------~~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch------hhcCCCccc
Confidence 356899999999999999998887643 267888899998876544433 356889999962 234677888
Q ss_pred ceEEEecCc
Q 014666 309 IRYVVLDEA 317 (420)
Q Consensus 309 l~~lVlDEa 317 (420)
+++||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 999886554
No 165
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.28 E-value=0.84 Score=45.26 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=32.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHhh-H-HHHhcCCcEEEEccCCCCchhHh
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCVG-I-PAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~-i-~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
+...|++++=...+.+.|.+.-. .|+...- + ......+.+++.||+|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 34579998877777777765311 1111000 0 01123478999999999999754
No 166
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.23 E-value=0.32 Score=46.54 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=26.6
Q ss_pred CceEEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 308 DIRYVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
.+++||||-...|...+ ...++..|.+.|...... -++-+|++|-.
T Consensus 156 g~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAke---l~vpVi~lsQl 205 (338)
T 4a1f_A 156 ELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARE---LEIPIIALVQL 205 (338)
T ss_dssp TEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHH---HTSCEEEEEEC
T ss_pred CCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHH---cCCeEEEEEec
Confidence 68999999998775321 223355555555433321 25667776543
No 167
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.14 E-value=3.4 Score=36.01 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=18.5
Q ss_pred CCcEEEEccCCCCchhHhHHHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.-.+++-.++|.|||.+.+--++.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalR 51 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAAR 51 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999886555554
No 168
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=86.93 E-value=2.7 Score=40.19 Aligned_cols=72 Identities=10% Similarity=0.177 Sum_probs=54.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.++++.-+..++..+... ++.+..++|+.........+ .....|||||. .+ ..++++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccCC
Confidence 458999999999999998888775 67788889988866544333 34578999994 23 346778899
Q ss_pred eEEEec
Q 014666 310 RYVVLD 315 (420)
Q Consensus 310 ~~lVlD 315 (420)
+++|.-
T Consensus 328 ~~Vi~~ 333 (400)
T 1s2m_A 328 NVVINF 333 (400)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 988863
No 169
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=86.91 E-value=2.5 Score=41.47 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=53.7
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCceE
Q 014666 236 RAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRY 311 (420)
Q Consensus 236 ~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~ 311 (420)
++||.++|+.-|..++..+... ++.+..++|+.........+ .....|||||. +-..++++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 4999999999999988888764 67888999998876554433 34578999996 2335678899999
Q ss_pred EEe
Q 014666 312 VVL 314 (420)
Q Consensus 312 lVl 314 (420)
+|.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 170
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.90 E-value=2.4 Score=43.68 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=55.4
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.++|+.-|.+++..+... ++.+..++|+......... .....+|||+|.. + ..++++.+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a-----~-~~GID~p~ 335 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA-----F-GMGIDKPD 335 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT-----S-CTTCCCSC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----h-hcCCCccc
Confidence 4567999999999999999888764 7788999999887654433 3456899999952 2 34677888
Q ss_pred ceEEEe
Q 014666 309 IRYVVL 314 (420)
Q Consensus 309 l~~lVl 314 (420)
+++||.
T Consensus 336 V~~VI~ 341 (591)
T 2v1x_A 336 VRFVIH 341 (591)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 999885
No 171
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=86.66 E-value=1.4 Score=49.14 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=61.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.+++|++++++-+..++..+.... .++++..++|++........+ ...++|||||. +-..++++.+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~------v~e~GiDip~ 882 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPT 882 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGSCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC------cceeeecccC
Confidence 35789999999999999888888763 367888999998866544332 35689999996 2335678999
Q ss_pred ceEEEecCcchh
Q 014666 309 IRYVVLDEADTL 320 (420)
Q Consensus 309 l~~lVlDEaD~~ 320 (420)
++++|+..+|.+
T Consensus 883 v~~VIi~~~~~~ 894 (1151)
T 2eyq_A 883 ANTIIIERADHF 894 (1151)
T ss_dssp EEEEEETTTTSS
T ss_pred CcEEEEeCCCCC
Confidence 999998877643
No 172
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=86.29 E-value=3 Score=40.12 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=54.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.++++.-+..++..+... ++.+..++|+.........+ .....|||+|.- -..++++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV------WARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG------GSSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh------hhCcCCcccC
Confidence 347999999999999988888764 67888899998866544333 345789999962 2356778899
Q ss_pred eEEEe
Q 014666 310 RYVVL 314 (420)
Q Consensus 310 ~~lVl 314 (420)
+++|.
T Consensus 346 ~~Vi~ 350 (410)
T 2j0s_A 346 SLIIN 350 (410)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99886
No 173
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=86.22 E-value=1.5 Score=43.28 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=47.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEE
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 313 (420)
+.++||.|||++-|..++..+... ++++..++|...............+|||||. .+. ..+++. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----STT-CCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEEE
Confidence 457999999999999999888775 6788888885433333233345589999995 223 456677 88876
No 174
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=86.14 E-value=2.1 Score=40.15 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=54.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.++++.-|..++..+... ++.+..++|+.+.......+ ....+|||||. .+. .++++.+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCccc
Confidence 4567999999999999998888775 67788889988766544332 34578999994 222 3566788
Q ss_pred ceEEEecC
Q 014666 309 IRYVVLDE 316 (420)
Q Consensus 309 l~~lVlDE 316 (420)
++++|.-.
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 88888643
No 175
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=85.88 E-value=2.7 Score=42.52 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=54.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.++|+.-|..++..+... ++.+..++|+.+....... .....+|||||.. -..++++.++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a------~~~GiD~p~v 305 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA------FGMGINKPNV 305 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT------SCTTTCCTTC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech------hhCCCCccCc
Confidence 456999999999999998888764 6788899999886544332 2456899999972 2345678889
Q ss_pred eEEEec
Q 014666 310 RYVVLD 315 (420)
Q Consensus 310 ~~lVlD 315 (420)
++||.=
T Consensus 306 ~~VI~~ 311 (523)
T 1oyw_A 306 RFVVHF 311 (523)
T ss_dssp CEEEES
T ss_pred cEEEEE
Confidence 888863
No 176
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.71 E-value=2.2 Score=39.46 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchhH
Q 014666 180 SVVLSSGSGSGRTLA 194 (420)
Q Consensus 180 dvl~~a~TGsGKTla 194 (420)
.+++.||+|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 499999999999965
No 177
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.31 E-value=3.4 Score=39.65 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=18.4
Q ss_pred ceEEEecCcchhhcc--CCHHHHHHHHHHch
Q 014666 309 IRYVVLDEADTLFDR--GFGPEISKILNPLK 337 (420)
Q Consensus 309 l~~lVlDEaD~~l~~--~~~~~l~~Il~~l~ 337 (420)
--+|||||+|.+... .....+..++..+.
T Consensus 139 ~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 139 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHE 169 (412)
T ss_dssp EEEEEEESTHHHHSCTTSCHHHHHHHHTHHH
T ss_pred eEEEEEeCHHHHhhccCcchHHHHHHHHHHH
Confidence 458999999998653 12445555555443
No 178
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=84.70 E-value=21 Score=33.01 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=18.7
Q ss_pred ceEEEecCcchhhc---cCCHHHHHHHHHH
Q 014666 309 IRYVVLDEADTLFD---RGFGPEISKILNP 335 (420)
Q Consensus 309 l~~lVlDEaD~~l~---~~~~~~l~~Il~~ 335 (420)
--+|||||+|.+.+ ..+...+..++..
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~ 167 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDN 167 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHc
Confidence 34899999999874 3466666666554
No 179
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.53 E-value=0.66 Score=38.00 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=17.4
Q ss_pred HHhcCCcEEEEccCCCCchhH
Q 014666 174 AVLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla 194 (420)
....+.++++.+++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345678999999999999964
No 180
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.39 E-value=12 Score=35.14 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+++.|+.|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999654
No 181
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.32 E-value=5.1 Score=37.41 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=17.2
Q ss_pred CCcEEEEccCCCCchhHhHHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l 200 (420)
|.-+++.|++|+|||...+--+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999965443333
No 182
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.80 E-value=1.7 Score=40.74 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=26.5
Q ss_pred Cce--EEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 308 DIR--YVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 308 ~l~--~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
.++ +||||-...|...+ ...++..++..|...... -++-++++|-
T Consensus 179 ~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~---~~i~vi~lsq 229 (315)
T 3bh0_A 179 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARE---LDVVVIALSQ 229 (315)
T ss_dssp SSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHH---HTCEEEEEEC
T ss_pred CCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHH---hCCeEEEEee
Confidence 478 99999999875321 235666666666443321 1455555544
No 183
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.47 E-value=4.7 Score=36.76 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=19.7
Q ss_pred HHhcCCcEEEEccCCCCchhHhHHH
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAYLLP 198 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~~lp 198 (420)
-+..|.-+++.+++|+|||+....-
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHH
Confidence 4557888999999999999764443
No 184
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=83.07 E-value=0.26 Score=41.77 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.++++..|..+...+... ++.+..++|+.........+ .....|||||.- + ..++++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDV-----A-ARGIDIPDV 99 (170)
Confidence 457999999999999988877664 67788888887665443333 234689999932 2 235567777
Q ss_pred eEEEec
Q 014666 310 RYVVLD 315 (420)
Q Consensus 310 ~~lVlD 315 (420)
.++|.-
T Consensus 100 ~~Vi~~ 105 (170)
T 2yjt_D 100 SHVFNF 105 (170)
Confidence 777753
No 185
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.29 E-value=0.8 Score=37.53 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.1
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..+.++++.+++|+|||...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46789999999999999654
No 186
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=81.22 E-value=1.5 Score=44.24 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=27.7
Q ss_pred HHHHHHCCCCCCcHHHHhhHH-HHhcCCcEEEEccCCCCchhHh
Q 014666 153 IKAVEKMGLFVPSEIQCVGIP-AVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 153 ~~~l~~~g~~~pt~iQ~~~i~-~i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..|...|. +++.+..-+. .+..|..+++.||||||||...
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 344556663 3444444444 4668999999999999999753
No 187
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=81.16 E-value=3.9 Score=39.73 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccC--------CCChHHHHHHh----cCCCcEEEeChhHHHhchh
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--------GVSSKALEDVS----NAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g--------g~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~ 300 (420)
.+.++||.++++.-+..+...+... ++.+..++| ++....+...+ ...+.|||+|.- -
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~------~ 429 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSV------G 429 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGG------G
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCc------c
Confidence 4568999999999999988888775 778888888 55544333322 345789999942 2
Q ss_pred cCcccCCCceEEEecCcc
Q 014666 301 DRNVSCDDIRYVVLDEAD 318 (420)
Q Consensus 301 ~~~~~l~~l~~lVlDEaD 318 (420)
..++++..+.++|+-+..
T Consensus 430 ~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 430 EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGGGSTTCCEEEESSCC
T ss_pred ccCCCchhCCEEEEeCCC
Confidence 346778888898865443
No 188
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=80.49 E-value=2.1 Score=42.05 Aligned_cols=68 Identities=9% Similarity=-0.034 Sum_probs=47.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEE
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 312 (420)
+.++||++|+++-|..++..+... ++++..++|+..............+|||||.- +. .++++. +.+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~v-----~e-~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTDI-----SE-MGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECGG-----GG-TSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECch-----HH-cCcccC-CcEE
Confidence 457999999999999998888776 67888888874332222233456899999962 22 345555 5554
No 189
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=79.99 E-value=8 Score=36.75 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=17.7
Q ss_pred cCCcEEEEccCCCCchhHhHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~ 199 (420)
.|.-+.+.+++|||||.....-+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999997654443
No 190
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=79.39 E-value=4 Score=40.76 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=49.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccC--------CCChHHHHHHh---c--CCCcEEEeChhHHHhchh
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--------GVSSKALEDVS---N--APIGMLIATPSEVLQHIE 300 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g--------g~~~~~~~~~l---~--~~~~IlV~TP~~L~~~l~ 300 (420)
..++||.++++..|..+...+........+++..++| +++...+...+ + ...+|||||. . -
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~-~ 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS-----V-A 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-----C-T
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-----h-h
Confidence 4689999999999999999999876555566666665 44443333222 2 3478999995 2 2
Q ss_pred cCcccCCCceEEEecC
Q 014666 301 DRNVSCDDIRYVVLDE 316 (420)
Q Consensus 301 ~~~~~l~~l~~lVlDE 316 (420)
..++++..+++||.=+
T Consensus 463 ~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 463 DEGIDIAECNLVILYE 478 (555)
T ss_dssp TCCEETTSCSEEEEES
T ss_pred hcCCccccCCEEEEeC
Confidence 3567788999988633
No 191
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=79.26 E-value=4.1 Score=42.61 Aligned_cols=69 Identities=9% Similarity=0.013 Sum_probs=47.9
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEE
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 313 (420)
+.++||.|||++-|..++..+... ++++..++|...............+|||||.- +. ..+++. +.+||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv-----~e-~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTDI-----SE-MGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECGG-----GG-TTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECch-----hh-cceeeC-CcEEE
Confidence 568999999999999988877664 77888888853222222223446899999953 22 355667 77766
No 192
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=78.56 E-value=5.1 Score=39.51 Aligned_cols=69 Identities=3% Similarity=-0.038 Sum_probs=48.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEE
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 313 (420)
..++||.+||+.-|..++..+... ++.+..++|...............+|||||. .+ ..++++.. .+||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~-~~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----IS-EMGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GG-GSSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HH-HhCcCCCC-CEEE
Confidence 347999999999999988887654 6778888876654333333345689999996 22 34566777 6665
No 193
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=77.42 E-value=5.7 Score=42.20 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=55.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhh-------ccCCCceecccCCCChHHHHHHhc---------CCCcEEEeChhHHHh
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFIS-------HCARLDSSMENGGVSSKALEDVSN---------APIGMLIATPSEVLQ 297 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~-------~~~~i~~~~~~gg~~~~~~~~~l~---------~~~~IlV~TP~~L~~ 297 (420)
+.++||.+|++.-+..+...+.... ...++.+..++|+.....+...+. ....|||||.-.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ia--- 379 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIA--- 379 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHH---
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHH---
Confidence 4589999999999999888887532 235788999999998877766553 245899999632
Q ss_pred chhcCcccCCCceEEEe
Q 014666 298 HIEDRNVSCDDIRYVVL 314 (420)
Q Consensus 298 ~l~~~~~~l~~l~~lVl 314 (420)
..++++..+.+||-
T Consensus 380 ---e~GidIp~v~~VId 393 (773)
T 2xau_A 380 ---ETSLTIDGIVYVVD 393 (773)
T ss_dssp ---HHTCCCTTEEEEEE
T ss_pred ---HhCcCcCCeEEEEe
Confidence 23567888887763
No 194
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=77.36 E-value=10 Score=35.81 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|.-+.+.+++|+|||....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46678999999999997643
No 195
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.28 E-value=1.6 Score=39.81 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.6
Q ss_pred HhcCCcEEEEccCCCCchhHh
Q 014666 175 VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..|.-+++.+|||||||..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456788999999999999764
No 196
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=76.04 E-value=2.9 Score=43.57 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=45.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccC--------CCChHHHHHHh----c-CCCcEEEeChhHHHhch
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--------GVSSKALEDVS----N-APIGMLIATPSEVLQHI 299 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g--------g~~~~~~~~~l----~-~~~~IlV~TP~~L~~~l 299 (420)
.+.++||.++++.-|..+...+........+++..++| ++....+...+ . ....|||||- .
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v- 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----V- 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----S-
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----h-
Confidence 35679999999999999999998865444477777765 55554443332 2 3578999994 2
Q ss_pred hcCcccCCCceEEEecCc
Q 014666 300 EDRNVSCDDIRYVVLDEA 317 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDEa 317 (420)
-..++++.++++||.=+.
T Consensus 471 ~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp SCCC---CCCSEEEEESC
T ss_pred hhcCCcCccCCEEEEeCC
Confidence 235677888998886443
No 197
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.66 E-value=0.75 Score=45.46 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=34.2
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhH
Q 014666 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla 194 (420)
+..+|++++--+.+.+.|.+.= +..|.-++..- +.-.+.+|+.||+|+|||+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHH
Confidence 4568999998888888776531 11222222111 11247899999999999975
No 198
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=75.66 E-value=3.6 Score=39.24 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCCchhHhHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPL 199 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~ 199 (420)
.|.-+++.+++|+|||...+--+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46779999999999997544333
No 199
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=75.53 E-value=10 Score=37.96 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=15.0
Q ss_pred CcEEEEccCCCCchhHhHH
Q 014666 179 KSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~l 197 (420)
.-+.+.|++|+|||.....
T Consensus 294 eVI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHH
Confidence 3478999999999976443
No 200
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=75.38 E-value=6.5 Score=40.60 Aligned_cols=69 Identities=4% Similarity=-0.036 Sum_probs=47.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEE
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 313 (420)
..++||.++|+.-|..++..+... ++++..++|................|||||. .+. ..+++. +++||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd-----v~~-rGiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISE-MGANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG-----GGG-TTCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc-----HHH-cCcccC-ceEEE
Confidence 457999999999999998888775 6778888875332222222345689999997 223 345564 77763
No 201
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=75.27 E-value=15 Score=34.69 Aligned_cols=24 Identities=13% Similarity=-0.135 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCCchhHhHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l 200 (420)
.|.-+++.|++|+|||...+--+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999975443333
No 202
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=74.97 E-value=5.6 Score=36.69 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=49.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
.+.++||.+++++-+..++..+. .+..++|+.........+ ....+|||||.- + ..++++..
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gid~~~ 284 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDV-----A-SRGLDIPL 284 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHH-----H-HTTCCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCc-----c-ccCCCccC
Confidence 45679999999999888766554 456677887765544333 345789999962 2 24677888
Q ss_pred ceEEEecCc
Q 014666 309 IRYVVLDEA 317 (420)
Q Consensus 309 l~~lVlDEa 317 (420)
++++|.-..
T Consensus 285 ~~~Vi~~~~ 293 (337)
T 2z0m_A 285 VEKVINFDA 293 (337)
T ss_dssp BSEEEESSC
T ss_pred CCEEEEecC
Confidence 999887443
No 203
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.69 E-value=3.5 Score=36.14 Aligned_cols=35 Identities=20% Similarity=0.026 Sum_probs=27.3
Q ss_pred CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 161 LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 161 ~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..-+.-|..++..+..|.-+.+.+|+|||||+.+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33344456677888889999999999999999754
No 204
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=74.59 E-value=29 Score=32.76 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=18.9
Q ss_pred CceEEEEeecccchHHHHHHHHhhc
Q 014666 347 GFQTILVTAAIAEMLGEQLSSLMEC 371 (420)
Q Consensus 347 ~~Q~v~~SATl~~~v~~~~~~~~~~ 371 (420)
...++.+||.-...+..++..+...
T Consensus 257 ~~~vi~iSA~~g~Gi~~L~~~i~~~ 281 (355)
T 3p32_A 257 RPPVLTMSAVEGRGLAELWDTVERH 281 (355)
T ss_dssp CCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999888887777665544
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.47 E-value=0.76 Score=42.84 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=32.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHh-hH-H-HHhcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCV-GI-P-AVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~-~i-~-~i~~g~dvl~~a~TGsGKTla~ 195 (420)
...|++++-...+.+.|.+.-. .|+... .+ . .+..++.+++.||+|+|||+..
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 4568888877777777665210 111000 00 0 1234678999999999999753
No 206
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.41 E-value=2.9 Score=40.16 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=46.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.++++.-|..++..+... ++.+..++|+.........+ .....|||+|.- -..++++.++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidip~v 349 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL------LARGIDVQQV 349 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS------CC--CCGGGC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc------cccCCCccCC
Confidence 357999999999999988877654 67788889988765544332 335789999952 2345677788
Q ss_pred eEEEe
Q 014666 310 RYVVL 314 (420)
Q Consensus 310 ~~lVl 314 (420)
+++|.
T Consensus 350 ~~Vi~ 354 (414)
T 3eiq_A 350 SLVIN 354 (414)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 88775
No 207
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=74.08 E-value=2.7 Score=41.18 Aligned_cols=19 Identities=11% Similarity=0.527 Sum_probs=16.8
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
...++++.|+||||||..+
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4579999999999999874
No 208
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.05 E-value=56 Score=30.23 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~l 197 (420)
++-+++.+++|+|||.....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 44578999999999976443
No 209
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=73.92 E-value=5.4 Score=36.52 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=32.1
Q ss_pred HHHHHHHHCCCCCCcHHHHhh-HHHHhcCC-----cEEEEccCCCCchhHhH
Q 014666 151 EMIKAVEKMGLFVPSEIQCVG-IPAVLNGK-----SVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 151 ~l~~~l~~~g~~~pt~iQ~~~-i~~i~~g~-----dvl~~a~TGsGKTla~~ 196 (420)
.+.+.|+..||. +++... +...++|+ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 688889888875 666444 34555553 49999999999998755
No 210
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=73.85 E-value=2.5 Score=44.01 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=49.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHh--hccCCCceecccCC--------CChHHHHHHh----cCCCcEEEeChhHHHhch
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFI--SHCARLDSSMENGG--------VSSKALEDVS----NAPIGMLIATPSEVLQHI 299 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l--~~~~~i~~~~~~gg--------~~~~~~~~~l----~~~~~IlV~TP~~L~~~l 299 (420)
+.++||.++++..+..+...+... ....|+++..++|+ ++...+...+ ....+|||||- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 568999999999999999888764 22336888888888 7665544433 23578999995 2
Q ss_pred hcCcccCCCceEEEe
Q 014666 300 EDRNVSCDDIRYVVL 314 (420)
Q Consensus 300 ~~~~~~l~~l~~lVl 314 (420)
-..++++.++++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 234577788888773
No 211
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=73.07 E-value=12 Score=39.16 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=54.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHH---HHHHhc---CCCcEEEeChhHHHhchhcCcccCCC
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKA---LEDVSN---APIGMLIATPSEVLQHIEDRNVSCDD 308 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~---~~~~l~---~~~~IlV~TP~~L~~~l~~~~~~l~~ 308 (420)
+..+|+++|+.-+..+...+... ++.+..++|+..... +..... ...+|||||.- -..++++ +
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi------~e~GlDi-~ 389 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA------IGMGLNL-S 389 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG------GGSSCCC-C
T ss_pred CCCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH------HHCCcCc-C
Confidence 34577799999888888777763 678999999998763 333444 34799999973 2346778 8
Q ss_pred ceEEEecCcchh
Q 014666 309 IRYVVLDEADTL 320 (420)
Q Consensus 309 l~~lVlDEaD~~ 320 (420)
+++||+-.+..+
T Consensus 390 v~~VI~~~~~k~ 401 (677)
T 3rc3_A 390 IRRIIFYSLIKP 401 (677)
T ss_dssp BSEEEESCSBC-
T ss_pred ccEEEECCcccc
Confidence 999998877654
No 212
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=72.41 E-value=4.4 Score=40.02 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=27.5
Q ss_pred Cce--EEEecCcchhhccC----CHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 308 DIR--YVVLDEADTLFDRG----FGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 308 ~l~--~lVlDEaD~~l~~~----~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
.++ +||||-...|...+ ...++..+...|...... -++-++++|-
T Consensus 308 ~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke---~~v~vi~lsq 358 (444)
T 3bgw_A 308 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARE---LDVVVIALSQ 358 (444)
T ss_dssp CSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHH---HTCEEEEEEE
T ss_pred CCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hCCeEEEEec
Confidence 578 99999999875332 234566666666543321 2566666665
No 213
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=72.26 E-value=2.1 Score=41.02 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.0
Q ss_pred HHhcCCcEEEEccCCCCchhHh
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~ 195 (420)
.+..|..+++.++||||||..+
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 4668999999999999999754
No 214
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=71.47 E-value=4.3 Score=40.66 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=18.5
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHHH
Q 014666 176 LNGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
..|.=+++.|++|+|||...+--+.+
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHH
Confidence 34667899999999999654433333
No 215
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=71.30 E-value=6.4 Score=36.54 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
.|+-+++.+++|+|||.....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466789999999999976543
No 216
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=70.83 E-value=4.4 Score=38.53 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++.+|+|+|||+..
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999753
No 217
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=70.74 E-value=6.1 Score=41.14 Aligned_cols=67 Identities=12% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEE
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYV 312 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~l 312 (420)
.+.++||.++|+.-|..++..+... ++.+..++|+...... .+.+.+|||||.- +.+ .+++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATdV-----aer-GIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATDA-----LMT-GYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECTT-----HHH-HCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECCh-----HHc-cCCCC-CcEE
Confidence 4568999999999999988888764 7889999998876532 2355699999962 232 34454 8877
Q ss_pred E
Q 014666 313 V 313 (420)
Q Consensus 313 V 313 (420)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 7
No 218
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=70.26 E-value=14 Score=36.55 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=51.8
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+...+|++....-+..+...+... +.++..++|++........+ ....+|||||+..+.. ++++.++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v 417 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNL 417 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccC
Confidence 344556666566666666655543 34788889988765543322 4557899999776643 5678899
Q ss_pred eEEEecCcc
Q 014666 310 RYVVLDEAD 318 (420)
Q Consensus 310 ~~lVlDEaD 318 (420)
+++|+..++
T Consensus 418 ~~vi~~~~~ 426 (510)
T 2oca_A 418 HHVVLAHGV 426 (510)
T ss_dssp EEEEESSCC
T ss_pred cEEEEeCCC
Confidence 999998877
No 219
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=69.35 E-value=17 Score=34.69 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.|.-+++.+++|+|||.. ++.++.
T Consensus 73 ~G~li~I~G~pGsGKTtl-al~la~ 96 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTL-ALAIVA 96 (366)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHH
T ss_pred CCcEEEEEcCCCCChHHH-HHHHHH
Confidence 456789999999999954 444443
No 220
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=69.30 E-value=1.9 Score=36.00 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+..+++.|++|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999753
No 221
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=69.05 E-value=4.9 Score=40.35 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=23.8
Q ss_pred CcHHHHhhHHHHhcCCcEEEEccCCCCchhH
Q 014666 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 164 pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla 194 (420)
-..+=..++-++..|.++++.||+|+|||..
T Consensus 27 q~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 27 RSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3444455556677889999999999999964
No 222
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=68.58 E-value=2 Score=36.54 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..|+=+++.||+|+|||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999754
No 223
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=68.30 E-value=2.6 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCCchhHhHHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l 200 (420)
|+.+++.+|+|+|||...+--+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999976443333
No 224
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=67.87 E-value=2.5 Score=40.03 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=18.2
Q ss_pred HHhcCCcEEEEccCCCCchhH
Q 014666 174 AVLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla 194 (420)
.+..|..+++.++||||||..
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHH
T ss_pred hccCCCEEEEECCCCCCHHHH
Confidence 356799999999999999974
No 225
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=67.82 E-value=0.9 Score=41.83 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=27.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHH-hhHHHH--hcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQC-VGIPAV--LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~i--~~g~dvl~~a~TGsGKTla~ 195 (420)
..+|++++-.+.+.+.|.+.- ..|+.. .++..+ .-.+.+++.+|+|+|||+..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 457999987777777776521 112211 112211 11234999999999999754
No 226
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=67.67 E-value=4 Score=35.95 Aligned_cols=48 Identities=8% Similarity=0.218 Sum_probs=30.9
Q ss_pred HHHHHHHHCCCCCCcHHHHhhHHHHhcC----CcEEEEccCCCCchhHhHHHHHH
Q 014666 151 EMIKAVEKMGLFVPSEIQCVGIPAVLNG----KSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 151 ~l~~~l~~~g~~~pt~iQ~~~i~~i~~g----~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
.+.+.|+-.|+. +... ..++..++.+ +.+++.+|.|+|||..+ ..++.
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~ 80 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIH 80 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHH
Confidence 577777776653 3333 4445555544 35999999999999654 44443
No 227
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.44 E-value=1.9 Score=42.08 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=32.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHHh-hHHH--HhcCCcEEEEccCCCCchhH
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQCV-GIPA--VLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~-~i~~--i~~g~dvl~~a~TGsGKTla 194 (420)
+..+|++.|=-+.+.+.|.+.= -.|+..- .+.. +...+.+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v---~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVI---ELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHH
Confidence 3467999986666666666531 1222111 1111 11247899999999999975
No 228
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=67.30 E-value=2.3 Score=36.72 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=16.7
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..++.+++.|++|||||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 45788999999999999764
No 229
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=66.85 E-value=3.3 Score=37.35 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCCCchhH
Q 014666 176 LNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla 194 (420)
..+..+++.|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567899999999999964
No 230
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=65.95 E-value=2.2 Score=41.96 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+++.+|||||||...
T Consensus 166 ~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred cCCeEEEECCCCCCHHHHH
Confidence 4556899999999999753
No 231
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.66 E-value=1.5 Score=43.37 Aligned_cols=54 Identities=30% Similarity=0.366 Sum_probs=31.7
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..+|++++=-+.+.+.|.+.= +..|--++..- +.-.+-+|+.||+|+|||+..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3457999986666666665421 01111111110 112478999999999999763
No 232
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=65.46 E-value=5.7 Score=39.09 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCchhHhHH
Q 014666 179 KSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~l 197 (420)
..+++.+++|+|||....-
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4789999999999976443
No 233
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.35 E-value=1.7 Score=43.10 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=33.4
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCCcHHHH-hhHHH--HhcCCcEEEEccCCCCchhH
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLFVPSEIQC-VGIPA--VLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~~--i~~g~dvl~~a~TGsGKTla 194 (420)
+..+|++.+=-..+.+.|.+.=. .|+.. +.+.. +.-.+.+|+.||+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~---~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVE---LPLLSPERFATLGIDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTH---HHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHH---HHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHH
Confidence 34579999877777777765311 11111 11111 12357899999999999975
No 234
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=65.11 E-value=2 Score=36.22 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=17.5
Q ss_pred hcCCcEEEEccCCCCchhHhH
Q 014666 176 LNGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~ 196 (420)
..++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 457789999999999997643
No 235
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=65.09 E-value=3.7 Score=39.39 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=19.5
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-++||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 3556778887 677788999999874
No 236
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=65.02 E-value=2.6 Score=36.24 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=16.9
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..|.-+++.|++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46778999999999999754
No 237
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=64.78 E-value=7 Score=38.60 Aligned_cols=69 Identities=7% Similarity=-0.000 Sum_probs=45.6
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEE
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVV 313 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lV 313 (420)
+.++||.+||+.-|..++..+... ++.+..++|................|||||.- + ..++++.. ++||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT~v-----~-~~GiDip~-~~VI 258 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITTDI-----S-EMGANFGA-SRVI 258 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEESSC-----C----CCCSC-SEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEECCh-----H-HhCeecCC-CEEE
Confidence 457999999999999998888775 67788888753322222222345789999952 2 23556666 5555
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=64.58 E-value=6.3 Score=38.78 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=14.9
Q ss_pred CcEEEEccCCCCchhHhHH
Q 014666 179 KSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~l 197 (420)
+-+++++++|+|||....-
T Consensus 101 ~vI~ivG~~GvGKTT~a~~ 119 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGK 119 (433)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4678889999999976543
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=64.53 E-value=3.4 Score=35.70 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|+-+++.||+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999997643
No 240
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=64.34 E-value=9.8 Score=34.69 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++.||+|+|||...
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3678999999999999653
No 241
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.18 E-value=2.3 Score=39.88 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=19.3
Q ss_pred hHHHHhcCCcEEEEccCCCCchhH
Q 014666 171 GIPAVLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 171 ~i~~i~~g~dvl~~a~TGsGKTla 194 (420)
+.-.+..+.++++.||+|+|||..
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHH
Confidence 334556688999999999999964
No 242
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=64.03 E-value=13 Score=35.78 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=48.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhccCCCcee-cccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCC-ceEE
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSS-MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD-IRYV 312 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~-~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~-l~~l 312 (420)
.++||.|+|+.-|..++..+... ++.+. .++|. ... .........+|||||+.. .+. -..++++.+ ++++
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~-~r~-~~~f~~g~~~vLvat~s~-T~~-~~~GiDip~~v~~V 324 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF-EKN-FEDFKVGKINILIGVQAY-YGK-LTRGVDLPERIKYV 324 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCH-HHH-HHHHHTTSCSEEEEECCT-TCC-CCCCCCCTTTCCEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCc-chH-HHHHhCCCCeEEEEecCc-Cch-hhccCccccccCEE
Confidence 57999999999999988888764 67776 66664 222 222334458999993210 012 234677888 8998
Q ss_pred Eec
Q 014666 313 VLD 315 (420)
Q Consensus 313 VlD 315 (420)
|.-
T Consensus 325 I~~ 327 (414)
T 3oiy_A 325 IFW 327 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 853
No 243
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=63.77 E-value=6.7 Score=39.20 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=38.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccC--------CCChHHHHHHh---c--CCCcEEEeChhHHHhch
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENG--------GVSSKALEDVS---N--APIGMLIATPSEVLQHI 299 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g--------g~~~~~~~~~l---~--~~~~IlV~TP~~L~~~l 299 (420)
.+.++||.++++..+..+...+.......++++..++| +++...+...+ + ..++|||||.-
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~------ 462 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV------ 462 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCc------
Confidence 35689999999999999999887754333444444444 44443333222 2 34789999952
Q ss_pred hcCcccCCCceEEEecC
Q 014666 300 EDRNVSCDDIRYVVLDE 316 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDE 316 (420)
-..++++..+++||.=+
T Consensus 463 ~~~GiDip~v~~VI~~d 479 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVLYE 479 (556)
T ss_dssp ----------CEEEEET
T ss_pred hhcCCCchhCCEEEEeC
Confidence 23467788999988643
No 244
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=63.69 E-value=4 Score=38.54 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=18.9
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 445678887 677889999999874
No 245
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=63.35 E-value=10 Score=41.21 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=42.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecc--------cCCCChHHHHHHh---c--CCCcEEEeChhHHHhch
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME--------NGGVSSKALEDVS---N--APIGMLIATPSEVLQHI 299 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~--------~gg~~~~~~~~~l---~--~~~~IlV~TP~~L~~~l 299 (420)
.+.++||.++|+..+..+...+.......++++..+ +|++....+...+ + ..++|||||- .
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~- 703 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----V- 703 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----c-
Confidence 467899999999999999999987643334444444 4445544433332 2 3478999994 2
Q ss_pred hcCcccCCCceEEEecC
Q 014666 300 EDRNVSCDDIRYVVLDE 316 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDE 316 (420)
-..++++..+++||+=+
T Consensus 704 ~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 704 ADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp ------CCCCSEEEEES
T ss_pred hhcCCcchhCCEEEEeC
Confidence 23456677888887643
No 246
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=63.31 E-value=2.9 Score=35.31 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhHhH
Q 014666 178 GKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~ 196 (420)
++.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999997643
No 247
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=63.26 E-value=4.5 Score=40.41 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=25.9
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEe
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVT 354 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~S 354 (420)
..++++|||||++| |..+...+..+++.| ++|.|+..
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~l----------glQliiat 449 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERL----------DMQLLIAA 449 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHc----------CCEEEEEC
Confidence 57999999999766 444455555566555 68988643
No 248
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.16 E-value=4.1 Score=39.70 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.1
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5667788988 567788999999885
No 249
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=63.13 E-value=20 Score=37.29 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=53.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhcc--------------------------------CCCceecccCCCChHHHHHHh
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHC--------------------------------ARLDSSMENGGVSSKALEDVS 281 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~--------------------------------~~i~~~~~~gg~~~~~~~~~l 281 (420)
+.++||.+|++.-+..+...+...... ....+..++||.+...+....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 467999999999999988887764321 123477889998876655443
Q ss_pred ----cCCCcEEEeChhHHHhchhcCcccCCCceEEEec
Q 014666 282 ----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLD 315 (420)
Q Consensus 282 ----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlD 315 (420)
.....|||||.-- ..++++..+.+||-+
T Consensus 332 ~~f~~g~~~vlvaT~~l------~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATPTL------AAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECGGG------GGSSCCCBSEEEECC
T ss_pred HHHHcCCCeEEEEChHH------hcccCCCceEEEEeC
Confidence 3468999999532 246678888776543
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=62.85 E-value=4 Score=35.46 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|.=+++.||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46778999999999997643
No 251
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=62.79 E-value=14 Score=38.56 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=51.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhcc--------------------------CCCceecccCCCChHHHHHHh----cC
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHC--------------------------ARLDSSMENGGVSSKALEDVS----NA 283 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~--------------------------~~i~~~~~~gg~~~~~~~~~l----~~ 283 (420)
+.++||.+|++.-+..+...+...... .+..+..++||.....+.... ..
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 456999999999999888877654211 123467788988876654433 34
Q ss_pred CCcEEEeChhHHHhchhcCcccCCCceEEEe
Q 014666 284 PIGMLIATPSEVLQHIEDRNVSCDDIRYVVL 314 (420)
Q Consensus 284 ~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVl 314 (420)
...|||||.- -..++++..+.+||-
T Consensus 322 ~~~vlvaT~~------l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVATPT------LAAGVNLPARRVIVR 346 (702)
T ss_dssp SCCEEEECST------TTSSSCCCBSEEEEC
T ss_pred CCeEEEECcH------HhccCCCCceEEEEc
Confidence 5799999963 234667788877554
No 252
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=62.53 E-value=4.1 Score=38.85 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 445677877 577789999999874
No 253
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=62.41 E-value=4 Score=39.00 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=18.9
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 445678887 577889999999885
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=62.33 E-value=20 Score=35.09 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
.+.-+++.+++|+|||.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345578889999999976443
No 255
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=62.30 E-value=4.2 Score=39.70 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-|.||||||.+.
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 445678887 567788999999874
No 256
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=62.25 E-value=4 Score=39.06 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=19.3
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-++||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3455678887 567788999999885
No 257
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=62.24 E-value=4.4 Score=38.34 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=20.0
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-++||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4566778887 677889999999875
No 258
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=62.16 E-value=4.4 Score=38.95 Aligned_cols=24 Identities=13% Similarity=0.419 Sum_probs=18.5
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 445678887 577788999999874
No 259
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=62.13 E-value=3.9 Score=39.41 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=19.7
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4566778887 566788999999875
No 260
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.99 E-value=2.1 Score=42.21 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=31.2
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..+|++.|=-..+.+.|.+.= +..|--++..- +.-.+-+|+.||+|+|||+..
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 3457999986666666665421 01111111110 122467999999999999753
No 261
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=61.79 E-value=4.5 Score=38.76 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=19.2
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-++||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3556678888 566788999999874
No 262
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=61.72 E-value=3.2 Score=34.70 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
++-++++|++|||||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 466899999999999764
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=61.67 E-value=3 Score=34.38 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-++++|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 264
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=61.44 E-value=3.6 Score=39.43 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.3
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..|.-+++.||||||||...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35567999999999999753
No 265
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=61.44 E-value=4 Score=39.12 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 445678887 577788999999864
No 266
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=61.34 E-value=4.4 Score=38.76 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-|+||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345678887 677889999999875
No 267
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=61.24 E-value=4.7 Score=38.49 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=18.5
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345678877 577789999999874
No 268
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=61.15 E-value=3.2 Score=38.09 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=31.2
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHH-hhHH-HHhcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQC-VGIP-AVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~-~~i~-~i~~g~dvl~~a~TGsGKTla~ 195 (420)
...|+++.=...+++.|.+.-. .+... ..+. ....++.+++.||+|+|||+..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3568888767777777764310 00000 0000 0123678999999999999754
No 269
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=61.15 E-value=4.8 Score=38.77 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=18.5
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 445678887 567788999999874
No 270
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=61.12 E-value=4.3 Score=39.13 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=27.5
Q ss_pred CceEEEecCcchhhccC---CHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 308 DIRYVVLDEADTLFDRG---FGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~---~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
.-.++|+||||.++... +...+..+++..+.. +.-+++.|-.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~-------g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKY-------NGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGG-------TCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhh-------CeEEEEEcCCHH
Confidence 35789999999998532 445566666666542 344555554443
No 271
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=61.09 E-value=4.9 Score=38.64 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=18.7
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-|+||||||.+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 345678887 577889999999874
No 272
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=60.96 E-value=3 Score=35.38 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..|.-+++.|++|||||...
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35777999999999999753
No 273
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=60.93 E-value=4.9 Score=38.26 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=18.5
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 445678887 567788999999874
No 274
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.74 E-value=4.6 Score=39.46 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=20.0
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-|+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5667788887 567788999999874
No 275
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=60.59 E-value=4.4 Score=38.66 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.0
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-++||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 5666788988 566789999999875
No 276
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=60.55 E-value=3.5 Score=34.99 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=16.4
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++.+++|||||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 277
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=60.50 E-value=4.7 Score=38.60 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=18.7
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 445678887 577789999999874
No 278
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=60.46 E-value=4.1 Score=38.86 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=19.7
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-++||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4556678887 567789999999875
No 279
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=60.45 E-value=3.1 Score=41.76 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=45.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
+.++||.++++.-|..++..+.. .++.+.+++|+......... .....+|||||. . -..++++.++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~-l~~GiDip~v 426 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----V-IARGIDVSQV 426 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTC
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----h-hhcCCCccCC
Confidence 45799999999999888776655 36778888888765432222 234578999996 2 2346778889
Q ss_pred eEEEec
Q 014666 310 RYVVLD 315 (420)
Q Consensus 310 ~~lVlD 315 (420)
++||..
T Consensus 427 ~~VI~~ 432 (508)
T 3fho_A 427 NLVVNY 432 (508)
T ss_dssp CEEEC-
T ss_pred CEEEEE
Confidence 998853
No 280
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=60.32 E-value=3.3 Score=39.22 Aligned_cols=18 Identities=28% Similarity=0.649 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 468999999999999753
No 281
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=60.27 E-value=4.3 Score=39.33 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-|+||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345678887 567789999999875
No 282
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=59.98 E-value=9.9 Score=40.40 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=41.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecc--------cCCCChHHHHHHh---c--CCCcEEEeChhHHHhch
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSME--------NGGVSSKALEDVS---N--APIGMLIATPSEVLQHI 299 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~--------~gg~~~~~~~~~l---~--~~~~IlV~TP~~L~~~l 299 (420)
.+.++||.++++..+..+...+.......++++..+ +|+++...+...+ + ..++|||||--
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~------ 703 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV------ 703 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCc------
Confidence 457899999999999999998887533333444333 4445444433322 2 34789999952
Q ss_pred hcCcccCCCceEEEecC
Q 014666 300 EDRNVSCDDIRYVVLDE 316 (420)
Q Consensus 300 ~~~~~~l~~l~~lVlDE 316 (420)
-..++++..+++||.=+
T Consensus 704 ~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp -------CCCSEEEEES
T ss_pred hhcCCCchhCCEEEEeC
Confidence 23467788999998643
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=59.88 E-value=4 Score=33.90 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+..+++.++.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999754
No 284
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=59.82 E-value=3.7 Score=39.54 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.4
Q ss_pred HhcCCcEEEEccCCCCchhHh
Q 014666 175 VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..|.-+++.+|||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 346778999999999999764
No 285
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=59.69 E-value=4.6 Score=38.94 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=18.4
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 345667887 677788999999874
No 286
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=59.67 E-value=4.1 Score=35.17 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCCCchhHh
Q 014666 175 VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..|+-++++|++|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346788999999999999753
No 287
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=59.63 E-value=2.1 Score=38.42 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=29.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHH--hcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV--LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i--~~g~dvl~~a~TGsGKTla~ 195 (420)
..+|+++.-.+.+...+...-.. .. ...++..+ .-.+.+++.+|+|+|||...
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45788887777666666543110 00 01112111 11234999999999999653
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=59.63 E-value=5 Score=34.31 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5777899999999999754
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=59.56 E-value=3.7 Score=34.57 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|+-+++.|+.|||||...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567999999999999753
No 290
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=59.40 E-value=24 Score=36.88 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=51.7
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhcc-----------------------------CCCceecccCCCChHHHHHHh---
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHC-----------------------------ARLDSSMENGGVSSKALEDVS--- 281 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~-----------------------------~~i~~~~~~gg~~~~~~~~~l--- 281 (420)
+.++||.+|+|.-|..+...+...... ....+..++||.....+....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 457999999999999888877654221 122477888998876654432
Q ss_pred -cCCCcEEEeChhHHHhchhcCcccCCCceEEEecCc
Q 014666 282 -NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEA 317 (420)
Q Consensus 282 -~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEa 317 (420)
.....|||||.-- ..++++..+.+ |||..
T Consensus 317 ~~g~~~vlvaT~~l------~~Gvdip~~~~-VI~~~ 346 (720)
T 2zj8_A 317 RKGIIKAVVATPTL------SAGINTPAFRV-IIRDI 346 (720)
T ss_dssp HTTSSCEEEECSTT------GGGCCCCBSEE-EECCS
T ss_pred HCCCCeEEEECcHh------hccCCCCceEE-EEcCC
Confidence 3457899999631 23566777776 45533
No 291
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=59.37 E-value=9.3 Score=36.27 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=31.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhh-HH-HHhcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVG-IP-AVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~-i~-~i~~g~dvl~~a~TGsGKTla~ 195 (420)
...|+++.=...+++.|.+.-. .++...- +. .....+.+++.||+|+|||+..
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 4578887766777776654310 0100000 00 1123578999999999999754
No 292
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=59.13 E-value=5.2 Score=35.08 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=16.7
Q ss_pred HhcCCcEEEEccCCCCchhHh
Q 014666 175 VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..|.-+.+.+|+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 456888999999999999754
No 293
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.83 E-value=6.7 Score=48.05 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=33.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHhhHH---HHhcCCcEEEEccCCCCchhHhHH
Q 014666 149 KAEMIKAVEKMGLFVPSEIQCVGIP---AVLNGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 149 ~~~l~~~l~~~g~~~pt~iQ~~~i~---~i~~g~dvl~~a~TGsGKTla~~l 197 (420)
...+.+.+.++|+..--.+-.+++. .+.-.+-+++.||||||||.+|-+
T Consensus 874 ~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 3566677788898543334444443 234567799999999999998754
No 294
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=58.82 E-value=2 Score=42.58 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.|+++.-|..++..+... ++.+..++|+.........+ ....+|||||.- + ..++++.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~-----~-~~GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-----C-ARGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccc-----c-ccCCccccC
Confidence 457999999999998888877765 56788888887665443333 234789999952 2 245678888
Q ss_pred eEEE
Q 014666 310 RYVV 313 (420)
Q Consensus 310 ~~lV 313 (420)
.+||
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 8886
No 295
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=58.39 E-value=5.5 Score=39.33 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-|.||||||.+.
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 344578887 577788999999875
No 296
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=58.37 E-value=41 Score=30.87 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|+-+.+.+++|+|||....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45667888999999996543
No 297
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=58.14 E-value=3.9 Score=38.48 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
.-+++.||||||||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34789999999999653
No 298
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=58.14 E-value=3.9 Score=38.38 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
=++++||||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999653
No 299
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=58.08 E-value=3.8 Score=35.32 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.8
Q ss_pred CcEEEEccCCCCchhH
Q 014666 179 KSVVLSSGSGSGRTLA 194 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla 194 (420)
+=+|++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3489999999999975
No 300
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=58.05 E-value=5 Score=37.29 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCchhH
Q 014666 177 NGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla 194 (420)
.+..+++.|++|+|||+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467899999999999965
No 301
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=57.88 E-value=4.3 Score=35.16 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=16.9
Q ss_pred HHhcCCcEEEEccCCCCchhHh
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~ 195 (420)
.+..|.=+.+.+|+|+|||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5677888999999999999754
No 302
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=57.82 E-value=5.4 Score=38.63 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=18.7
Q ss_pred HHHHhcCCc--EEEEccCCCCchhHh
Q 014666 172 IPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 172 i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
+..+++|.| ++.-++||||||.+.
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 445678887 677788999999875
No 303
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=57.64 E-value=4.4 Score=34.44 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=14.0
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
+=+++.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44789999999999754
No 304
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=57.49 E-value=4.5 Score=34.78 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+++.|++|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4778999999999999764
No 305
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=57.34 E-value=3.8 Score=34.42 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
.|.=+.+.+++|||||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 466689999999999977554
No 306
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=57.17 E-value=4.6 Score=35.71 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=17.2
Q ss_pred HHhcCCcEEEEccCCCCchhHhH
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~~ 196 (420)
++-.|.=+++.||+|+|||..+-
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHH
Confidence 34568889999999999997643
No 307
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=57.13 E-value=92 Score=26.59 Aligned_cols=62 Identities=6% Similarity=-0.003 Sum_probs=37.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCCh-HHHHHHhcCCCcEEEeChhHHHhchh
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSS-KALEDVSNAPIGMLIATPSEVLQHIE 300 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~-~~~~~~l~~~~~IlV~TP~~L~~~l~ 300 (420)
..+.++++|...|...+.+.+..+.. .+....++... -...+.+..+++|+|+--+. ..+|+
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~----~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgt-a~~lr 66 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNF----IPITKTASLTRASKIAFGLQDEVDAIISRGAT-SDYIK 66 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTC----EEEEEECCHHHHHHHHHHHTTTCSEEEEEHHH-HHHHH
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCC----ceEEEECCHHHHHHHHHHhcCCCeEEEECChH-HHHHH
Confidence 45799999999998876666665432 33344444321 11122225689998876554 44444
No 308
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=57.01 E-value=3.9 Score=36.88 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=13.3
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+++++++|||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999653
No 309
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=56.93 E-value=4.2 Score=36.47 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=29.7
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
...|+++.-.+.+.+.|...- +..+..++.. .+.-.+.+++.||+|+|||+..
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 346888877777777665420 0011100000 0112457999999999999653
No 310
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=56.91 E-value=5.5 Score=34.69 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..|+=+++.||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 36778999999999999754
No 311
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.55 E-value=4.8 Score=35.28 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCCchhH
Q 014666 177 NGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla 194 (420)
.|+-+++.++||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456799999999999844
No 312
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=56.34 E-value=4.1 Score=38.74 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
++-+++.||||||||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346899999999999653
No 313
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=56.18 E-value=7.3 Score=34.25 Aligned_cols=19 Identities=37% Similarity=0.744 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+++.|++|+|||...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 3567999999999999543
No 314
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=55.85 E-value=31 Score=31.82 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~l 197 (420)
+.-+++.+++|+|||.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577889999999976443
No 315
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=55.47 E-value=44 Score=36.31 Aligned_cols=77 Identities=10% Similarity=0.112 Sum_probs=56.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh---cCC---CcEEEeChhHHHhchhcCcccC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS---NAP---IGMLIATPSEVLQHIEDRNVSC 306 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~~---~~IlV~TP~~L~~~l~~~~~~l 306 (420)
.+.++||.|+++.-+..+...+... .|+++..++|+++.......+ +.+ ++|||||.- -..++++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v------~~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEI------GSEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCC------TTCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecch------hhcCCCc
Confidence 4567999999999998887777642 378899999998765443332 232 899999932 2346778
Q ss_pred CCceEEEecCcc
Q 014666 307 DDIRYVVLDEAD 318 (420)
Q Consensus 307 ~~l~~lVlDEaD 318 (420)
.++.++|+-+.+
T Consensus 573 ~~~~~VI~~d~p 584 (968)
T 3dmq_A 573 QFASHMVMFDLP 584 (968)
T ss_dssp TTCCEEECSSCC
T ss_pred ccCcEEEEecCC
Confidence 899999987665
No 316
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=55.41 E-value=4.2 Score=33.90 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+++.++.|||||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999764
No 317
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=55.34 E-value=4.3 Score=33.49 Aligned_cols=16 Identities=6% Similarity=0.030 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 318
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.33 E-value=2.8 Score=41.28 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=31.3
Q ss_pred cccccccCCCCHHHHHHHHHCC---CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 139 VVSSFQELGLKAEMIKAVEKMG---LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..+|+++|=-+.+.+.|.+.= +..|--++..- +.-.+-+|+.+|+|+|||+..
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHH
Confidence 3458999985555555554421 11222221111 112478999999999999753
No 319
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=54.92 E-value=4.6 Score=33.58 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-++++|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999754
No 320
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=54.91 E-value=5.3 Score=38.52 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=19.4
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-++||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4556678887 566788999999875
No 321
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=54.40 E-value=2.8 Score=38.28 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=30.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHH--hcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV--LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i--~~g~dvl~~a~TGsGKTla~ 195 (420)
...|+++.-.+.+...+...-.. .. ...++..+ .-.+.+++.+|+|+|||...
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 45688887777777666543210 00 01111111 01234999999999999653
No 322
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=54.22 E-value=6.3 Score=34.14 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=22.1
Q ss_pred CcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 164 PSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 164 pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
.++.+... ..+..|.-+++.|+.|||||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 34555544 33556788999999999999754
No 323
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=53.99 E-value=10 Score=45.92 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHHHHHHCCCCCCcHHH-HhhHH---HHhcCCcEEEEccCCCCchhHhHH
Q 014666 150 AEMIKAVEKMGLFVPSEIQ-CVGIP---AVLNGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 150 ~~l~~~l~~~g~~~pt~iQ-~~~i~---~i~~g~dvl~~a~TGsGKTla~~l 197 (420)
..+.+.+.+.|+. +++.+ .+++. .+...+.+++.||||||||.++-+
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 4566677778885 45544 33332 344678899999999999998643
No 324
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=53.65 E-value=5.9 Score=34.43 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=27.8
Q ss_pred ceEEEecCcchhhccC-CHHHHHHHHHHchhhhcccCCCCceEEEEeecccchHHH
Q 014666 309 IRYVVLDEADTLFDRG-FGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEMLGE 363 (420)
Q Consensus 309 l~~lVlDEaD~~l~~~-~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~v~~ 363 (420)
-.+|||||||.++... ...+...++..+... .....++|+++.. +..+..
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~----r~~~~~iil~tq~-~~~l~~ 138 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTH----RHQGIDIFVLTQG-PKLLDQ 138 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGT----TTTTCEEEEEESC-GGGBCH
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhc----CcCCeEEEEECCC-HHHHhH
Confidence 4689999999986432 111112344444321 1246788888877 444333
No 325
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.59 E-value=5.4 Score=36.90 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
...+++.|++|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 478999999999999653
No 326
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=53.05 E-value=23 Score=35.43 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.1
Q ss_pred CcEEEEccCCCCchhHhHH
Q 014666 179 KSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~l 197 (420)
..+++++++|+|||..+.-
T Consensus 102 ~vI~ivG~~GvGKTTl~~k 120 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSK 120 (504)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999976543
No 327
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=52.88 E-value=4 Score=34.33 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|.-+++.|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999997643
No 328
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=52.41 E-value=5.7 Score=37.93 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
...+++.||+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 568999999999999653
No 329
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=52.35 E-value=5.9 Score=37.72 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=30.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHH-----hcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAV-----LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i-----~~g~dvl~~a~TGsGKTla~ 195 (420)
...|++++-...+.+.|.+.=. .|+ ..|.+ ...+.+++.||+|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~---~~~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTH---HHH---HCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 4568888766666666654210 010 01111 12467999999999999753
No 330
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=52.27 E-value=5.1 Score=37.00 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=14.1
Q ss_pred CcEEEEccCCCCchhH
Q 014666 179 KSVVLSSGSGSGRTLA 194 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla 194 (420)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5689999999999975
No 331
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=51.97 E-value=7.9 Score=37.08 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.0
Q ss_pred cCCc--EEEEccCCCCchhHh
Q 014666 177 NGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~d--vl~~a~TGsGKTla~ 195 (420)
.|.+ ++.-++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4777 688899999999875
No 332
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=51.82 E-value=5.5 Score=39.32 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=27.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
..|+++.-...+.+.+...- ..+......++.+++.+|+|+|||+..
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~--------~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIV--------ELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp SEETTEESCHHHHHHHHHHH--------HHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hchhhccCHHHHHHHHHHHH--------HHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 34667665666655544210 000011123468999999999999764
No 333
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=51.19 E-value=6.5 Score=36.10 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.6
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
..+++.||+|+|||...
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 46999999999999754
No 334
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=51.15 E-value=7.4 Score=34.18 Aligned_cols=21 Identities=43% Similarity=0.420 Sum_probs=13.3
Q ss_pred HhcCCcEEEEccCCCCchhHh
Q 014666 175 VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..|.-+.+.||+|||||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345777899999999999764
No 335
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=50.32 E-value=5.7 Score=37.44 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=13.8
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999653
No 336
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=50.32 E-value=6 Score=33.43 Aligned_cols=30 Identities=10% Similarity=-0.045 Sum_probs=19.9
Q ss_pred eEEEEeecc-cchHHHHHHHHhhcchhccCC
Q 014666 349 QTILVTAAI-AEMLGEQLSSLMECLERDNAG 378 (420)
Q Consensus 349 Q~v~~SATl-~~~v~~~~~~~~~~~~~~~~~ 378 (420)
.+++.|... ..++.+++.+.+.+-..+..+
T Consensus 147 ~~ii~tsh~~~~~~e~~~~~i~~~g~~~~~~ 177 (189)
T 2bdt_A 147 RYFYNTSHLQPTNLNDIVKNLKTNPRFIFCM 177 (189)
T ss_dssp TSEEECSSSCGGGHHHHHHHHHHCGGGSCC-
T ss_pred cEEEeCCCCChhhHHHHHHHHhhCCcEEEee
Confidence 467777777 778888888888444444333
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=50.31 E-value=6.7 Score=33.13 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..+.-+++.|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45678999999999999754
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=49.95 E-value=6.7 Score=36.12 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
.-++++|++|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999764
No 339
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=49.89 E-value=8.3 Score=35.98 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
...+++.|++|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999653
No 340
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=49.87 E-value=6.6 Score=33.96 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCCchhH
Q 014666 177 NGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla 194 (420)
.|.-+.+.+++|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466788999999999964
No 341
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=49.73 E-value=6.3 Score=33.75 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=14.7
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
+-++++|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999764
No 342
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=49.65 E-value=6.8 Score=33.37 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|+-+++.|+.|||||...-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46779999999999997643
No 343
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=49.54 E-value=5.9 Score=37.64 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999653
No 344
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=49.49 E-value=9.6 Score=38.34 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=19.0
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHH
Q 014666 176 LNGKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~lp~l 200 (420)
..+.++++.+.||||||.+.-.-++
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999977544333
No 345
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=49.04 E-value=6.1 Score=33.91 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..|.-+++.+++|||||...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35778999999999999754
No 346
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=48.88 E-value=9.2 Score=34.51 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=18.3
Q ss_pred HhcCCcEEEEccCCCCchhHhH
Q 014666 175 VLNGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~~ 196 (420)
.+.|..+++.+++|||||...-
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHH
Confidence 3459999999999999997643
No 347
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=48.83 E-value=1.5 Score=32.64 Aligned_cols=42 Identities=64% Similarity=0.794 Sum_probs=38.4
Q ss_pred ccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhhhc
Q 014666 375 DNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLS 416 (420)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~~ 416 (420)
..++.|+.+...+++.+++..+++.++++.|+.+++.+|...
T Consensus 40 ~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~ 81 (85)
T 2dyd_A 40 DQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSA 81 (85)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSC
T ss_pred cccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999998754
No 348
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=48.80 E-value=3.6 Score=39.03 Aligned_cols=71 Identities=13% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh----cCCCcEEEeChhHHHhchhcCcccCCCc
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS----NAPIGMLIATPSEVLQHIEDRNVSCDDI 309 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l 309 (420)
..++||.++++.-|..++..+... ++.+..++|+.........+ .....|||+|.- + ..++++..+
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gldi~~~ 328 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----L-ARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECCh-----h-hcCCCcccC
Confidence 457999999999998888777653 56777888887654433332 234689999952 2 235667778
Q ss_pred eEEEe
Q 014666 310 RYVVL 314 (420)
Q Consensus 310 ~~lVl 314 (420)
+++|.
T Consensus 329 ~~Vi~ 333 (394)
T 1fuu_A 329 SLVIN 333 (394)
T ss_dssp -----
T ss_pred CEEEE
Confidence 88775
No 349
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=48.77 E-value=6 Score=33.36 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+.-+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 350
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=48.65 E-value=3.8 Score=36.93 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999754
No 351
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=48.50 E-value=2.8 Score=31.17 Aligned_cols=42 Identities=43% Similarity=0.612 Sum_probs=38.2
Q ss_pred ccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhhhc
Q 014666 375 DNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLS 416 (420)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~~ 416 (420)
..++.|+.+...+++.+++..+++.++++.|+.+++.++...
T Consensus 41 ~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~ 82 (85)
T 1nmr_A 41 AAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRH 82 (85)
T ss_dssp HHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCC
T ss_pred cccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999998653
No 352
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=48.50 E-value=20 Score=31.85 Aligned_cols=27 Identities=11% Similarity=0.394 Sum_probs=21.2
Q ss_pred ChhHHHhchhcCcccCCCceEEEecCc
Q 014666 291 TPSEVLQHIEDRNVSCDDIRYVVLDEA 317 (420)
Q Consensus 291 TP~~L~~~l~~~~~~l~~l~~lVlDEa 317 (420)
||..+.+.|....++++++.++-+||-
T Consensus 45 tp~~~y~~L~~~~i~w~~v~~f~~DEr 71 (232)
T 3lhi_A 45 SPIAFFNALSQKDLDWKNVGITLADER 71 (232)
T ss_dssp TTHHHHHHHHTSCCCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhcCCCchheEEEEeeec
Confidence 666677776667788899999999994
No 353
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=48.32 E-value=9 Score=32.48 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
.+.+.+|+|+|||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999754
No 354
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=47.91 E-value=6.9 Score=32.78 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-.++.+++|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4689999999999764
No 355
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=47.80 E-value=7 Score=32.26 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.4
Q ss_pred CcEEEEccCCCCchhHhH
Q 014666 179 KSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~ 196 (420)
+++++.+..|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 689999999999997643
No 356
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=47.58 E-value=10 Score=32.14 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=29.5
Q ss_pred CceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEee
Q 014666 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTA 355 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SA 355 (420)
.-.++++||.+.-||......+..++..+. ...|+|++|-
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~--------~~~~~ivith 125 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESS--------KESQFIVITL 125 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHT--------TTSEEEEECS
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhc--------cCCEEEEEEe
Confidence 347999999999998776777777776654 2467777763
No 357
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=47.38 E-value=7.3 Score=34.11 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+.-+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 4567999999999999764
No 358
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=47.35 E-value=7.3 Score=31.94 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=12.9
Q ss_pred cEEEEccCCCCchhH
Q 014666 180 SVVLSSGSGSGRTLA 194 (420)
Q Consensus 180 dvl~~a~TGsGKTla 194 (420)
-.++.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999976
No 359
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=47.21 E-value=2.1 Score=29.75 Aligned_cols=41 Identities=39% Similarity=0.520 Sum_probs=37.3
Q ss_pred ccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhhh
Q 014666 375 DNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHL 415 (420)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~ 415 (420)
..++.|+.+...+++.+.+..+++.+++..|+.+++.+|..
T Consensus 19 ~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~ 59 (61)
T 1i2t_A 19 AFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIA 59 (61)
T ss_dssp GGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 35888999999999999999999999999999999999864
No 360
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=47.17 E-value=6.6 Score=33.04 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+.-+++.|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 361
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=47.09 E-value=6.9 Score=37.45 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=20.7
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
.+-++|++||.-.-||......+..++..+.
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~ 332 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELE 332 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGG
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 3557788888777776666666666666554
No 362
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=46.96 E-value=7.2 Score=38.01 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=14.6
Q ss_pred chhhccCCHHHHHHHHHH
Q 014666 318 DTLFDRGFGPEISKILNP 335 (420)
Q Consensus 318 D~~l~~~~~~~l~~Il~~ 335 (420)
|.|++.|+.+++..++..
T Consensus 210 d~Ml~~GlleEv~~L~~~ 227 (409)
T 3eph_A 210 DDMLERGALQEIKQLYEY 227 (409)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHh
Confidence 568888988888888875
No 363
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=46.94 E-value=3.5 Score=33.86 Aligned_cols=56 Identities=36% Similarity=0.523 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHhhcchhccCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhhhc
Q 014666 357 IAEMLGEQLSSLMECLERDNAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLS 416 (420)
Q Consensus 357 l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~~ 416 (420)
+.+.+..++... .....+.|+.+.+.+++.+++..+++.+.+..|+.+++.+|...
T Consensus 70 LGE~LyplV~~~----~p~~A~KITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~ 125 (144)
T 1g9l_A 70 LGERLFPLIQAM----HPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 125 (144)
T ss_dssp TTSSSHHHHHHH----TTSCCSSHHHHTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh----CccccchhhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 345555555443 23358999999999999999999999999999999999998754
No 364
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.89 E-value=26 Score=32.66 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.2
Q ss_pred cEEEEccCCCCchhHhH
Q 014666 180 SVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~ 196 (420)
++++.||+|+|||....
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 39999999999996643
No 365
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=46.72 E-value=6.9 Score=33.69 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+.+.|++|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3455789999999999754
No 366
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=46.46 E-value=6.4 Score=39.39 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
....+++.||+|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3467999999999999753
No 367
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=46.43 E-value=10 Score=32.55 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|.-+++.+++|+|||....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46678999999999996543
No 368
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=46.18 E-value=8.3 Score=33.54 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567999999999999753
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=46.15 E-value=7.3 Score=32.61 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+++.++.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999753
No 370
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=46.13 E-value=9.2 Score=32.31 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+.-+++.|+.|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999753
No 371
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=45.83 E-value=12 Score=32.20 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=20.1
Q ss_pred CCCceEEEecCcchh--hccCCHHHHHHHHH
Q 014666 306 CDDIRYVVLDEADTL--FDRGFGPEISKILN 334 (420)
Q Consensus 306 l~~l~~lVlDEaD~~--l~~~~~~~l~~Il~ 334 (420)
+.+.++|||||++.| ++..|...+..++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 466789999999888 44445555555554
No 372
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=45.45 E-value=8.7 Score=34.20 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=32.4
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
+.+-++|++||--.-||......+..++..+... .-.+|+++..-
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-------~g~tvi~vtHd 205 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE-------DGKTVVVVTHD 205 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-------HCCEEEEECSC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-------cCCEEEEEcCC
Confidence 4567899999999999888788888888877531 12466665543
No 373
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=45.21 E-value=11 Score=32.56 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
=.++.|+.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4689999999999864
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=45.09 E-value=8.3 Score=33.57 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++.|+.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQC 22 (222)
T ss_dssp CSCCEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467999999999999764
No 375
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=45.01 E-value=78 Score=31.54 Aligned_cols=124 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
.|.-+++.+++|+|||.....-+-. ....+-+++++++-.... |+...+..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~----------------------------~~~~G~~vi~~~~ee~~~-~l~~~~~~ 330 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN----------------------------ACANKERAILFAYEESRA-QLLRNAYS 330 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH----------------------------HHTTTCCEEEEESSSCHH-HHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH----------------------------HHhCCCCEEEEEEeCCHH-HHHHHHHH
Q ss_pred hhccCCCceecccCCCChHHHHHHhcCCCcEEEe------ChhHHHhchhcCcccCCCceEEEecCcchhhccC-----C
Q 014666 257 ISHCARLDSSMENGGVSSKALEDVSNAPIGMLIA------TPSEVLQHIEDRNVSCDDIRYVVLDEADTLFDRG-----F 325 (420)
Q Consensus 257 l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~------TP~~L~~~l~~~~~~l~~l~~lVlDEaD~~l~~~-----~ 325 (420)
+... .......+.--+.. +.|.....+....+ ..+.++|||| -=.-+|.. .
T Consensus 331 ~g~~----------------~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l-~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 331 WGMD----------------FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEIN-DFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp TSCC----------------HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHH-TTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred cCCC----------------HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHH-hhCCCEEEEc-ChHHHHhhCChHHH
Q ss_pred HHHHHHHHHHchhhhcccCCCCceEEEEe
Q 014666 326 GPEISKILNPLKDSALKSNGQGFQTILVT 354 (420)
Q Consensus 326 ~~~l~~Il~~l~~~~~~~~~~~~Q~v~~S 354 (420)
...+..++..+.. .+.-+|+.|
T Consensus 393 ~~~i~~ll~~l~~-------~g~tvilvs 414 (525)
T 1tf7_A 393 RQFVIGVTGYAKQ-------EEITGLFTN 414 (525)
T ss_dssp HHHHHHHHHHHHH-------TTCEEEEEE
T ss_pred HHHHHHHHHHHHh-------CCCEEEEEE
No 376
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=44.98 E-value=19 Score=36.67 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=18.6
Q ss_pred CCcEEEEccCCCCchhHhHHHHHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l~ 201 (420)
+.++++.+.||||||.+.-.-++.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999875544444
No 377
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=44.97 E-value=8.1 Score=33.35 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.1
Q ss_pred cEEEEccCCCCchhHhH
Q 014666 180 SVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~ 196 (420)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 378
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=44.91 E-value=12 Score=32.60 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=19.0
Q ss_pred hcCCcEEEEccCCCCchhHhHHHHH
Q 014666 176 LNGKSVVLSSGSGSGRTLAYLLPLV 200 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~lp~l 200 (420)
..|.-+++.+++|+|||.....-+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3567899999999999976554443
No 379
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=44.89 E-value=5.5 Score=34.29 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=17.7
Q ss_pred HHHhcCCcEEEEccCCCCchhHh
Q 014666 173 PAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 173 ~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
+.+..+.-+.+.|++|||||...
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHH
Confidence 34455667899999999999754
No 380
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=44.88 E-value=8.1 Score=32.39 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 381
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=44.37 E-value=40 Score=38.11 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
+++-+.+||||+=--+|..-...+...+..+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 46678999999998888877777777776654
No 382
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=44.37 E-value=8.4 Score=33.29 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.2
Q ss_pred cEEEEccCCCCchhHhH
Q 014666 180 SVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~ 196 (420)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 383
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=44.31 E-value=12 Score=36.96 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
...++++.|++|+|||...
T Consensus 200 ~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3468999999999999764
No 384
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=44.19 E-value=9.8 Score=32.93 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=17.3
Q ss_pred hcCCcEEEEccCCCCchhHhHH
Q 014666 176 LNGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~~l 197 (420)
..|.-+.+.+|+|+|||.....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3566799999999999976544
No 385
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=44.18 E-value=18 Score=40.32 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=15.1
Q ss_pred EEEccCCCCchhHhHHHHHH
Q 014666 182 VLSSGSGSGRTLAYLLPLVQ 201 (420)
Q Consensus 182 l~~a~TGsGKTla~~lp~l~ 201 (420)
+|.|+.|||||.+.+-=+..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ 24 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQD 24 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEEeCCCCChHHHHHHHHHH
Confidence 68899999999875544443
No 386
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=44.16 E-value=9.5 Score=31.92 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.4
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
.-+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999764
No 387
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=43.99 E-value=13 Score=38.16 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.4
Q ss_pred HHHhcCCcEEEEccCCCCchhHh
Q 014666 173 PAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 173 ~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
..+..|..+++.+|+|+|||...
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 35668899999999999999654
No 388
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=43.98 E-value=7.9 Score=41.16 Aligned_cols=82 Identities=15% Similarity=0.320 Sum_probs=48.7
Q ss_pred CCCeEEEEcCcHHHHH-----HHHHHHHHhhc-c-CCCceecccCCCChHHHHHH----hcCCCcEEEeChhHHHhchhc
Q 014666 233 MHPRAIVLCTTEESAD-----QGFHMAKFISH-C-ARLDSSMENGGVSSKALEDV----SNAPIGMLIATPSEVLQHIED 301 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~-----Qi~~~~~~l~~-~-~~i~~~~~~gg~~~~~~~~~----l~~~~~IlV~TP~~L~~~l~~ 301 (420)
.+.+++|+||+.+-.. .+......+.. . .++.+..++|++........ .....+|||||. .+ .
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~-----vi-e 650 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT-----VI-E 650 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-----CC-C
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC-----CC-C
Confidence 3567899999765321 12222333333 2 36788899998765433222 234589999995 22 3
Q ss_pred CcccCCCceEEEecCcchh
Q 014666 302 RNVSCDDIRYVVLDEADTL 320 (420)
Q Consensus 302 ~~~~l~~l~~lVlDEaD~~ 320 (420)
.++++.+++++|+..++++
T Consensus 651 ~GIDiP~v~~VIi~d~~r~ 669 (780)
T 1gm5_A 651 VGIDVPRANVMVIENPERF 669 (780)
T ss_dssp SCSCCTTCCEEEBCSCSSS
T ss_pred ccccCCCCCEEEEeCCCCC
Confidence 5678899999999888753
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=43.74 E-value=8.5 Score=32.26 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
+-+++.|+.|||||...
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999864
No 390
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=43.70 E-value=9.5 Score=31.72 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
+.+++.++.|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999753
No 391
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=43.61 E-value=9.4 Score=35.63 Aligned_cols=21 Identities=5% Similarity=0.264 Sum_probs=17.3
Q ss_pred HhcCCcEEEEccCCCCchhHh
Q 014666 175 VLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 175 i~~g~dvl~~a~TGsGKTla~ 195 (420)
+..|.-+.+.+|+|||||...
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHH
Confidence 346888999999999999653
No 392
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=43.52 E-value=9.3 Score=31.83 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=11.9
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.++-+++.|+.|||||...-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678999999999997643
No 393
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=43.52 E-value=23 Score=32.14 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=26.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhH
Q 014666 141 SSFQELGLKAEMIKAVEKMGLFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 141 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla 194 (420)
..|.++--.+.+++.|...= .. .....+++.||+|+|||..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTAT 54 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHH
Confidence 35777666677777666431 10 1123599999999999965
No 394
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=43.51 E-value=8.4 Score=32.43 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|.-+++.+..|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46679999999999997543
No 395
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=43.41 E-value=9.8 Score=32.47 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+.-+++.++.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456999999999999763
No 396
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=43.40 E-value=9.5 Score=32.66 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|+-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4677999999999999764
No 397
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=43.20 E-value=26 Score=30.93 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=21.3
Q ss_pred ChhHHHhchhcCcccCCCceEEEecCc
Q 014666 291 TPSEVLQHIEDRNVSCDDIRYVVLDEA 317 (420)
Q Consensus 291 TP~~L~~~l~~~~~~l~~l~~lVlDEa 317 (420)
||..+.+.|.+..++++++.++-+||-
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr 70 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADER 70 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeec
Confidence 666677777667788899999999994
No 398
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=43.15 E-value=2.9 Score=31.60 Aligned_cols=41 Identities=34% Similarity=0.498 Sum_probs=37.6
Q ss_pred cCCCeeeeeeecccceEEeccccHHHHHHHHHHHHhhhhhc
Q 014666 376 NAGKVTAMLLEMDQAEVFDLTESQDALKKKVVEAMDSLHLS 416 (420)
Q Consensus 376 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~~~~l~~~ 416 (420)
.++.|+.+...+++.+++..+++.++++.|+.+++.+|...
T Consensus 41 lAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~ 81 (92)
T 1ifw_A 41 AAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESF 81 (92)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999998753
No 399
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=42.71 E-value=12 Score=39.23 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=19.9
Q ss_pred hHHHHhcCCc--EEEEccCCCCchhHh
Q 014666 171 GIPAVLNGKS--VVLSSGSGSGRTLAY 195 (420)
Q Consensus 171 ~i~~i~~g~d--vl~~a~TGsGKTla~ 195 (420)
.+..+++|.| ++.-++||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677788887 566689999999874
No 400
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=42.70 E-value=9.1 Score=31.55 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
+-+++.++.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999763
No 401
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=42.68 E-value=79 Score=34.66 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=23.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhh
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFIS 258 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~ 258 (420)
.+.+++|+|++++-|..++..+..+.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhh
Confidence 45689999999999999999998876
No 402
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=42.53 E-value=10 Score=32.51 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677999999999999764
No 403
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=42.41 E-value=12 Score=35.05 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.3
Q ss_pred CcEEEEccCCCCchhHhH
Q 014666 179 KSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~~ 196 (420)
..+++.||+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999997643
No 404
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=42.15 E-value=9.5 Score=32.57 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+.+.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999764
No 405
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=41.97 E-value=10 Score=31.15 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
.+++.++.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999763
No 406
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=41.84 E-value=7.5 Score=41.43 Aligned_cols=54 Identities=15% Similarity=0.324 Sum_probs=34.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCC---CCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 139 VVSSFQELGLKAEMIKAVEKMGLF---VPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 139 ~~~~f~~l~l~~~l~~~l~~~g~~---~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
+...|.+++.-..+.+.|.+.-.. .|.-++.. -+...+.+|+.+|.|+|||+..
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHHH
Confidence 345799999888888888764221 11111100 0112367999999999999653
No 407
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=41.72 E-value=9 Score=32.71 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3567899999999999764
No 408
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=41.69 E-value=10 Score=32.51 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999764
No 409
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=41.66 E-value=11 Score=38.74 Aligned_cols=15 Identities=7% Similarity=0.381 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchhH
Q 014666 180 SVVLSSGSGSGRTLA 194 (420)
Q Consensus 180 dvl~~a~TGsGKTla 194 (420)
++++.|++|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999964
No 410
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=41.65 E-value=9.3 Score=36.51 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=0.0
Q ss_pred EEEEccCCCCchhHh
Q 014666 181 VVLSSGSGSGRTLAY 195 (420)
Q Consensus 181 vl~~a~TGsGKTla~ 195 (420)
.++.|+||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 411
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=41.58 E-value=11 Score=32.70 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchhHhH
Q 014666 178 GKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~ 196 (420)
+.-+.+.|++|||||...-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468899999999997643
No 412
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=41.51 E-value=32 Score=37.80 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=50.4
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCc-eEE
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDI-RYV 312 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l-~~l 312 (420)
+.++||.|+|+.-|..++..+... +++..++|+.... .........+|||||... .+.+ ..++++.++ ++|
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lhg~~~~~-l~~F~~G~~~VLVaTas~-Tdv~-~rGIDip~VI~~V 346 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKKGD-YEKFVEGEIDHLIGTAHY-YGTL-VRGLDLPERIRFA 346 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSSHH-HHHHHHTSCSEEEEECC--------CCSCCTTTCCEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEeccHHHH-HHHHHcCCCcEEEEecCC-CCee-EeccccCCcccEE
Confidence 467999999999988877766543 7788888887532 222334568999994110 0112 236788994 888
Q ss_pred EecCcc
Q 014666 313 VLDEAD 318 (420)
Q Consensus 313 VlDEaD 318 (420)
|.=.+.
T Consensus 347 I~~~~P 352 (1054)
T 1gku_B 347 VFVGCP 352 (1054)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 876655
No 413
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=41.45 E-value=9.7 Score=32.48 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=14.3
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
+-+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999764
No 414
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=41.40 E-value=20 Score=34.36 Aligned_cols=21 Identities=10% Similarity=0.319 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
.+.++++.|+||+|||...-.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 456788888888888865433
No 415
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=41.21 E-value=10 Score=32.17 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=13.5
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999753
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=40.91 E-value=11 Score=33.13 Aligned_cols=19 Identities=26% Similarity=0.393 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+..+++.++.|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4568999999999999753
No 417
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=40.81 E-value=11 Score=32.78 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+..+++.++.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 567899999999999753
No 418
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=40.69 E-value=32 Score=32.09 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHCCCC-----CCcH-HHHhhHHHHhc----------------CCcEEEEccCCCCchhH
Q 014666 147 GLKAEMIKAVEKMGLF-----VPSE-IQCVGIPAVLN----------------GKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 147 ~l~~~l~~~l~~~g~~-----~pt~-iQ~~~i~~i~~----------------g~dvl~~a~TGsGKTla 194 (420)
..++.+++...+.|+. ..|. .-......+.. |+-+++.|+.|+|||..
T Consensus 91 ~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~ 160 (314)
T 1ko7_A 91 EPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSET 160 (314)
T ss_dssp CCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHH
T ss_pred CCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHH
Confidence 3478888888887764 1122 22222233333 78899999999999644
No 419
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=40.68 E-value=80 Score=33.66 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=37.7
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcC--CCcEEEeCh
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNA--PIGMLIATP 292 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~--~~~IlV~TP 292 (420)
..+||.|.|++-+..+...+... |+.+.++.|+....+....... ...|+|||.
T Consensus 433 ~pvLVft~s~~~se~Ls~~L~~~----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd 488 (844)
T 1tf5_A 433 QPVLVGTVAVETSELISKLLKNK----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 488 (844)
T ss_dssp CCEEEEESCHHHHHHHHHHHHTT----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred CcEEEEECCHHHHHHHHHHHHHC----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC
Confidence 34999999999999888777653 7888888888654433222221 247888885
No 420
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=40.53 E-value=34 Score=38.14 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=39.6
Q ss_pred cCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKF 256 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~ 256 (420)
.|.. +|.|.-|||||.+..-=++..|+... ............++|+|+=|+.-|..+...+..
T Consensus 16 ~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g----------------~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 16 QGER-LIEASAGTGKTFTIAALYLRLLLGLG----------------GSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SSCE-EEECCTTSCHHHHHHHHHHHHHTTCS----------------SSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHHhcCC----------------cccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4544 99999999999887666665332100 000000011234799999999999887776655
Q ss_pred h
Q 014666 257 I 257 (420)
Q Consensus 257 l 257 (420)
.
T Consensus 79 ~ 79 (1180)
T 1w36_B 79 N 79 (1180)
T ss_dssp H
T ss_pred H
Confidence 3
No 421
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=40.51 E-value=10 Score=31.74 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999753
No 422
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=40.40 E-value=14 Score=34.35 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|.-+.+.+++|+|||....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 35678899999999997643
No 423
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=40.30 E-value=12 Score=33.24 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.+.-+++.|++|||||...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567999999999999754
No 424
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=40.20 E-value=1.6e+02 Score=24.58 Aligned_cols=69 Identities=10% Similarity=-0.155 Sum_probs=17.7
Q ss_pred HHhcCCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHH
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHM 253 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~ 253 (420)
..+-|-.+-+.+..|-|-|+.+.+|+...-.. .............+.++|||=........+...
T Consensus 16 ~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~---------------~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~ 80 (206)
T 3mm4_A 16 RGSHMASTDSESETRVKSVRTGRKPIGNPEDE---------------QETSKPSDDEFLRGKRVLVVDDNFISRKVATGK 80 (206)
T ss_dssp ------------------------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHH
T ss_pred ccccCCceeeeccCCCcceeeeccCCCCCccc---------------ccccCCCcccccCCCEEEEEeCCHHHHHHHHHH
Confidence 34556678888999999999999997541100 000001111123456788888777776666555
Q ss_pred HHHh
Q 014666 254 AKFI 257 (420)
Q Consensus 254 ~~~l 257 (420)
+...
T Consensus 81 L~~~ 84 (206)
T 3mm4_A 81 LKKM 84 (206)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 5543
No 425
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=40.03 E-value=11 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.8
Q ss_pred HHhcCCcEEEEccCCCCchhHh
Q 014666 174 AVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla~ 195 (420)
.+..++.++++||||+|||+..
T Consensus 1263 ~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1263 LLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHTCEEEEECSTTSSHHHHH
T ss_pred HHHCCCeEEEECCCCCCHHHHH
Confidence 4567899999999999999753
No 426
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=39.55 E-value=13 Score=34.51 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
.|.-+.+.+++|+|||.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~ 119 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGK 119 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 455688999999999976543
No 427
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=39.43 E-value=12 Score=33.49 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=16.5
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|.-+.+.+++|||||...-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46679999999999997643
No 428
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=39.12 E-value=11 Score=32.51 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999753
No 429
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=39.09 E-value=43 Score=28.11 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=9.3
Q ss_pred ccCCCCchhHhHH
Q 014666 185 SGSGSGRTLAYLL 197 (420)
Q Consensus 185 a~TGsGKTla~~l 197 (420)
+..|+|||+..+.
T Consensus 9 ~kgG~GKTt~a~~ 21 (206)
T 4dzz_A 9 PKGGSGKTTAVIN 21 (206)
T ss_dssp SSTTSSHHHHHHH
T ss_pred CCCCccHHHHHHH
Confidence 4578999976443
No 430
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=38.93 E-value=12 Score=31.95 Aligned_cols=19 Identities=11% Similarity=0.244 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|+-+++.++.|+|||...
T Consensus 15 ~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELS 33 (181)
T ss_dssp TTEEEEEEESSSSSHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHH
Confidence 5678999999999999553
No 431
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=38.85 E-value=11 Score=31.68 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.4
Q ss_pred EEEEccCCCCchhHhH
Q 014666 181 VVLSSGSGSGRTLAYL 196 (420)
Q Consensus 181 vl~~a~TGsGKTla~~ 196 (420)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999997643
No 432
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=38.85 E-value=1.3e+02 Score=30.28 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=49.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHhhcc----CCCceecccCCCCh--HHHHHHhcC-C---CcEEEeChhHHHhchhcC
Q 014666 233 MHPRAIVLCTTEESADQGFHMAKFISHC----ARLDSSMENGGVSS--KALEDVSNA-P---IGMLIATPSEVLQHIEDR 302 (420)
Q Consensus 233 ~~~~~Lil~PtreLa~Qi~~~~~~l~~~----~~i~~~~~~gg~~~--~~~~~~l~~-~---~~IlV~TP~~L~~~l~~~ 302 (420)
.+.++||.|+++.-|..++..+...... .+-.+..++|.... ......... . +-|+|+|-- -..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~------l~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQL------LTT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESST------TTT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECCh------hhc
Confidence 3578999999999999999988776421 22235556666543 111122222 1 237777632 124
Q ss_pred cccCCCceEEEecCc
Q 014666 303 NVSCDDIRYVVLDEA 317 (420)
Q Consensus 303 ~~~l~~l~~lVlDEa 317 (420)
++++..+.+||++..
T Consensus 512 GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV 526 (590)
T ss_dssp TCCCTTEEEEEEESC
T ss_pred CccchheeEEEEEec
Confidence 678899999998654
No 433
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=38.82 E-value=12 Score=36.78 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
.+++++.+|+|+|||+..
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999998753
No 434
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=38.73 E-value=14 Score=32.79 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=19.6
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHH
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKIL 333 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il 333 (420)
.+-++|++||.-.-||......+..++
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 456899999999888866555555554
No 435
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=38.58 E-value=11 Score=33.79 Aligned_cols=18 Identities=17% Similarity=0.205 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+.-++++|+.|||||...
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 456899999999999753
No 436
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=38.55 E-value=85 Score=33.45 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=38.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhc--CCCcEEEeCh
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSN--APIGMLIATP 292 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~--~~~~IlV~TP 292 (420)
+..+||.|.|++-+..+...+... |+.+.++.|+....+...... ....|+|||.
T Consensus 441 gqpvLVft~sie~se~Ls~~L~~~----gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 497 (853)
T 2fsf_A 441 GQPVLVGTISIEKSELVSNELTKA----GIKHNVLNAKFHANEAAIVAQAGYPAAVTIATN 497 (853)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHT----TCCCEECCTTCHHHHHHHHHTTTSTTCEEEEES
T ss_pred CCCEEEEECcHHHHHHHHHHHHHC----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 345999999999999988877764 788888888754433222211 1236999886
No 437
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=38.14 E-value=12 Score=32.09 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+.-+.+.+++|||||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445889999999999754
No 438
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=38.05 E-value=13 Score=32.63 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
+.+-++|++||--.-||......+..++..+.. .-.+++++..-
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~--------~g~tvi~vtHd 199 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINE--------GGTSIVMVTHE 199 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--------TTCEEEEECSC
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--------CCCEEEEEcCC
Confidence 456789999999998888778888888877753 12466665543
No 439
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=38.04 E-value=12 Score=32.32 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=13.3
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-.++.+++|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4678899999999764
No 440
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=37.44 E-value=16 Score=31.94 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
.|.-+.+.+|+|||||..+-+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~ 54 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKT 54 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
No 441
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=37.35 E-value=12 Score=31.60 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+.+.+++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999764
No 442
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=37.33 E-value=38 Score=37.50 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=51.3
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhccCCCcee-cccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCC-ceEE
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSS-MENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDD-IRYV 312 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~-~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~-l~~l 312 (420)
.++||.++|+.-|..++..+... ++.+. .++|. ... .........+|||||... .+.+ ..++++.+ +++|
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~----g~~~~~~lhg~-rr~-l~~F~~G~~~VLVatas~-Tdvl-arGIDip~~V~~V 381 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF-EKN-FEDFKVGKINILIGVQAY-YGKL-TRGVDLPERIKYV 381 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHT----TCCEEESSSSH-HHH-HHHHHHTSCSEEEEETTT-HHHH-CCSCCCTTTCCEE
T ss_pred CCEEEEECcHHHHHHHHHHHHhC----CCCeeeEecCc-HHH-HHHHHCCCCCEEEEecCC-CCee-EecCcCCCCCCEE
Confidence 67999999999999988888774 67777 66663 112 222234568999993110 1122 34677888 8998
Q ss_pred EecCcch
Q 014666 313 VLDEADT 319 (420)
Q Consensus 313 VlDEaD~ 319 (420)
|.=.+-.
T Consensus 382 I~~d~P~ 388 (1104)
T 4ddu_A 382 IFWGTPS 388 (1104)
T ss_dssp EEESCCE
T ss_pred EEECCCC
Confidence 8766554
No 443
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=37.22 E-value=16 Score=32.31 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=19.0
Q ss_pred CCCceEEEecCcchhhccCCHHHHHH
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISK 331 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~ 331 (420)
+.+-+++++||.-.-||......+..
T Consensus 146 ~~~p~lllLDEPts~LD~~~~~~i~~ 171 (229)
T 2pze_A 146 YKDADLYLLDSPFGYLDVLTEKEIFE 171 (229)
T ss_dssp HSCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred hcCCCEEEEECcccCCCHHHHHHHHH
Confidence 34568999999998888665555544
No 444
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=37.22 E-value=16 Score=32.80 Aligned_cols=45 Identities=18% Similarity=0.326 Sum_probs=32.2
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
+.+-++|++||.-.-||......+..++..+. .+ .+++++..-..
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--------~g-~tviivtH~~~ 205 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKIC--------KG-RTVIIIAHRLS 205 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--------TT-SEEEEECSSGG
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--------CC-CEEEEEeCCHH
Confidence 45568999999999888877777777777663 12 46777665443
No 445
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=37.04 E-value=9.9 Score=34.06 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCCchhHh
Q 014666 178 GKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~ 195 (420)
+.-+++.|++|||||...
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346899999999999753
No 446
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=36.94 E-value=9.4 Score=31.72 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..|.-+.+.+|.|+|||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45667889999999999643
No 447
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=36.85 E-value=14 Score=32.85 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+.+.+|+|+|||..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
No 448
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=36.81 E-value=14 Score=33.25 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=33.8
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
+.+-++|++||.=.-||......+..++..+.. .-.+|+++..-...
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--------~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--------KGITFLIIEHRLDI 215 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--------TTCEEEEECSCCST
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--------CCCEEEEEecCHHH
Confidence 356689999999998888778888888877753 22466666655443
No 449
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=36.80 E-value=16 Score=33.03 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=30.8
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
.+-++|++||.-.-||......+..++..+.. + .+++++..-.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--------~-~tviivtH~~ 214 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--------N-RTLIIIAHRL 214 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--------T-SEEEEECSSG
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcC--------C-CEEEEEcCCH
Confidence 34589999999988888777777777776631 2 4777766543
No 450
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=36.28 E-value=13 Score=37.04 Aligned_cols=53 Identities=26% Similarity=0.424 Sum_probs=28.9
Q ss_pred ccccccCCCCHHHHHHHHHCC--CCCCcHHHHhhHHHHhcCCcEEEEccCCCCchhHh
Q 014666 140 VSSFQELGLKAEMIKAVEKMG--LFVPSEIQCVGIPAVLNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 140 ~~~f~~l~l~~~l~~~l~~~g--~~~pt~iQ~~~i~~i~~g~dvl~~a~TGsGKTla~ 195 (420)
...|+++.=....+..|.+.- +..|..++... +.-.+.+++.+|+|+|||+..
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 346888776666655554420 11111111000 011256999999999999764
No 451
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=35.96 E-value=15 Score=33.26 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
+.+-++|++||--.-||......+..++..+.. .-.+|+++..-.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~--------~g~tvi~vtHd~ 213 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--------EGKTMVVVTHEM 213 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------TTCCEEEECSCH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--------CCCEEEEEeCCH
Confidence 355689999999988888778888888877753 124566655443
No 452
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=35.92 E-value=37 Score=27.65 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=11.7
Q ss_pred CceEEEecCcchhh
Q 014666 308 DIRYVVLDEADTLF 321 (420)
Q Consensus 308 ~l~~lVlDEaD~~l 321 (420)
.-.+|||||+|.+.
T Consensus 115 ~~~vl~iDe~~~l~ 128 (195)
T 1jbk_A 115 GNVILFIDELHTMV 128 (195)
T ss_dssp TTEEEEEETGGGGT
T ss_pred CCeEEEEeCHHHHh
Confidence 34689999999986
No 453
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=35.85 E-value=26 Score=40.50 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=52.4
Q ss_pred CCcEEEEccCCCCchhHhHHHHHHHhhhhhhhhhhhhhhhHhHhhhhcccCCCCCCCCeEEEEcCcHHHHHHHHHHHHHh
Q 014666 178 GKSVVLSSGSGSGRTLAYLLPLVQVYSQLDEEHHLQLVGITQMLRRDEALLPMKPMHPRAIVLCTTEESADQGFHMAKFI 257 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~lp~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lil~PtreLa~Qi~~~~~~l 257 (420)
|+-+.+.+|.|||||...+ +++.... ..+..|+++.+-.+|.... ++.+
T Consensus 1431 g~~iei~g~~~sGkttl~~-~~~a~~~---------------------------~~g~~~~~i~~e~~~~~~~---~~~~ 1479 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTL-QVIAAAQ---------------------------REGKTCAFIDAEHALDPIY---ARKL 1479 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHH-HHHHHHH---------------------------HTTCCEEEECTTSCCCHHH---HHHT
T ss_pred CCEEEEEcCCCCCHHHHHH-HHHHHHH---------------------------hcCCeEEEEecCCCCCHHH---HHHc
Confidence 3569999999999997644 3433111 1355688888776665442 3333
Q ss_pred hccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhc--CcccCCCceEEEecCcchhhcc
Q 014666 258 SHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIED--RNVSCDDIRYVVLDEADTLFDR 323 (420)
Q Consensus 258 ~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~--~~~~l~~l~~lVlDEaD~~l~~ 323 (420)
|+.. -+++|.-|..--++|.- ..+.-..+++||||.+..+...
T Consensus 1480 ----Gv~~-------------------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~ 1524 (1706)
T 3cmw_A 1480 ----GVDI-------------------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1524 (1706)
T ss_dssp ----TCCG-------------------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCT
T ss_pred ----CCCH-------------------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCcc
Confidence 3321 12566666433222211 1111234779999999887643
No 454
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=35.82 E-value=74 Score=27.80 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=36.3
Q ss_pred EEEcCcHH-HHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCcccCCCceEEEecC
Q 014666 238 IVLCTTEE-SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDE 316 (420)
Q Consensus 238 Lil~Ptre-La~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDE 316 (420)
+++.++.+ ++......+.......+. +..+.||. ||..+.+.|....++++++.++-+||
T Consensus 4 ~~~~~~~~~l~~~aA~~l~~~i~~~~~-~i~ls~G~------------------T~~~~~~~L~~~~~~~~~v~v~~ldE 64 (234)
T 2ri0_A 4 TIKVKNKTEGSKVAFRMLEEEITFGAK-TLGLATGS------------------TPLELYKEIRESHLDFSDMVSINLDE 64 (234)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHTTCC-EEEECCSS------------------TTHHHHHHHHTSCCCCTTCEEEESEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhCCC-EEEEcCCC------------------CHHHHHHHHHhcCCChhheEEEeCee
Confidence 56666655 666666666665543233 44555555 55556666654446677777787777
No 455
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=35.69 E-value=31 Score=32.02 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=13.0
Q ss_pred EEEEccCCCCchhHh
Q 014666 181 VVLSSGSGSGRTLAY 195 (420)
Q Consensus 181 vl~~a~TGsGKTla~ 195 (420)
+++.++.|||||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 688999999999764
No 456
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=35.63 E-value=17 Score=33.29 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=33.1
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAEM 360 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~~ 360 (420)
+.+-++|++||-=.-||......+..++..+... .-.+|+++..-...
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~-------~g~tvi~vtHdl~~ 206 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE-------LGITIIIATHDIDI 206 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH-------HCCEEEEEESCCSS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh-------CCCEEEEEecCHHH
Confidence 4567899999999888887777888888777521 12356665555443
No 457
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=35.59 E-value=14 Score=31.97 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
.-+++.++.|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999754
No 458
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=35.29 E-value=8.8 Score=32.40 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhHhH
Q 014666 180 SVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~ 196 (420)
-+.+.+++|||||....
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999997643
No 459
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=35.08 E-value=15 Score=31.38 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~l 197 (420)
|.-+.+.+++|+|||..+-+
T Consensus 1 G~~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHH
Confidence 45578999999999976443
No 460
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=35.00 E-value=14 Score=32.23 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=13.6
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999754
No 461
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.96 E-value=16 Score=38.49 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
...++++.||+|+|||...
T Consensus 200 ~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3468999999999999753
No 462
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=34.80 E-value=15 Score=32.74 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=31.0
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
.+-++|++||.-.-||......+..++..+.. + .+++++..-
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--------~-~tvi~vtH~ 197 (243)
T 1mv5_A 156 RNPKILMLDEATASLDSESESMVQKALDSLMK--------G-RTTLVIAHR 197 (243)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--------T-SEEEEECCS
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhcC--------C-CEEEEEeCC
Confidence 34579999999999999888888888876641 2 466666553
No 463
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=34.80 E-value=29 Score=30.79 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=21.6
Q ss_pred ChhHHHhchhcCcccCCCceEEEecCc
Q 014666 291 TPSEVLQHIEDRNVSCDDIRYVVLDEA 317 (420)
Q Consensus 291 TP~~L~~~l~~~~~~l~~l~~lVlDEa 317 (420)
||..+.+.|.+..++++++.++-+||-
T Consensus 48 tp~~~y~~L~~~~idw~~v~~f~~DEr 74 (233)
T 3nwp_A 48 TPLKLFQLLSMKSIDWSDVYITLADER 74 (233)
T ss_dssp TTHHHHHHHHHCCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhcCCChhHeEEEeCeec
Confidence 666677777667788999999999994
No 464
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=34.80 E-value=16 Score=33.12 Aligned_cols=19 Identities=21% Similarity=0.609 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+.+.+|+|||||..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
No 465
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=34.58 E-value=18 Score=32.76 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=32.2
Q ss_pred CceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecccc
Q 014666 308 DIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIAE 359 (420)
Q Consensus 308 ~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~~ 359 (420)
+-++|++||-=.-||......+..++..+... ...+++++..-..
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-------~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-------EPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-------SSEEEEEECSCHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-------CCCEEEEEEcCHH
Confidence 67899999998888887777888888777531 2246777655443
No 466
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=34.44 E-value=16 Score=32.86 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+.+.+|+|+|||..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp TTCEEEEECCSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
No 467
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.41 E-value=2.3e+02 Score=24.68 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=34.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChH-H-HHHHhc-CCCcEEEeChhHHHhchh
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSK-A-LEDVSN-APIGMLIATPSEVLQHIE 300 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~-~-~~~~l~-~~~~IlV~TP~~L~~~l~ 300 (420)
...++++|...|.......+..+... ..+..+.++.... . -...+. .+++|+|+--+. ..+|+
T Consensus 13 ~~ii~i~~~~~L~~~~~~i~~e~~~~--~~I~vi~~~le~av~~a~~~~~~~~~dVIISRGgt-a~~Lr 78 (225)
T 2pju_A 13 KPVIWTVSVTRLFELFRDISLEFDHL--ANITPIQLGFEKAVTYIRKKLANERCDAIIAAGSN-GAYLK 78 (225)
T ss_dssp CCEEEEECCHHHHHHHHHHHTTTTTT--CEEEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHH-HHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhhCCC--ceEEEecCcHHHHHHHHHHHHhcCCCeEEEeCChH-HHHHH
Confidence 46899999999988655555543322 2333333433211 1 112234 358998876554 44444
No 468
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=34.34 E-value=14 Score=32.93 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.+..+++.|+.|||||...-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45679999999999997643
No 469
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=34.23 E-value=13 Score=33.01 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.|.-+.+.||+|||||+..-
T Consensus 24 ~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45567899999999997643
No 470
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=34.12 E-value=21 Score=31.94 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=31.2
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
.+-++|++||.-.-||......+..++..+.. .-.+|+++..-.
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--------~g~tvi~vtHd~ 203 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRG--------PNFGALVITHYQ 203 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--------TTCEEEEECSSS
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--------cCCEEEEEecCH
Confidence 34579999999999988777788887776642 224666665543
No 471
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=33.84 E-value=21 Score=43.93 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.1
Q ss_pred HHhcCCcEEEEccCCCCchhH
Q 014666 174 AVLNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 174 ~i~~g~dvl~~a~TGsGKTla 194 (420)
.+..|+.++++||||+|||..
T Consensus 1300 ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1300 WLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHTTCCCEEESSTTSSHHHH
T ss_pred HHHCCCcEEEECCCCCCHHHH
Confidence 456889999999999999953
No 472
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=33.84 E-value=15 Score=32.00 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=13.4
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
.+++.+|+||||++..
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999998653
No 473
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=33.72 E-value=15 Score=34.53 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=0.0
Q ss_pred EEEEccCCCCchhHh
Q 014666 181 VVLSSGSGSGRTLAY 195 (420)
Q Consensus 181 vl~~a~TGsGKTla~ 195 (420)
.++.||+|+|||..+
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 474
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=33.30 E-value=22 Score=32.23 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
.+-++|++||.-.-||......+..++..+.. .-.+|+++..-.
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~--------~g~tviivtHd~ 224 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRD--------GKRSFIIVTHYQ 224 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC--------SSCEEEEECSSG
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--------cCCEEEEEeeCH
Confidence 34579999999998888777777777776632 224666665543
No 475
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=33.25 E-value=16 Score=31.41 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.9
Q ss_pred cEEEEccCCCCchhHhH
Q 014666 180 SVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 180 dvl~~a~TGsGKTla~~ 196 (420)
-+.+.|+.|||||.+.-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997643
No 476
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=33.18 E-value=18 Score=34.46 Aligned_cols=20 Identities=15% Similarity=0.229 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCCchhHhHH
Q 014666 178 GKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 178 g~dvl~~a~TGsGKTla~~l 197 (420)
|.-+.+.+++|+|||.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~ 176 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGK 176 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 45588999999999986543
No 477
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=33.11 E-value=41 Score=29.78 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=35.0
Q ss_pred EEEcCcHH-HHHHHHHHHHHhhccCCCceecccCCCChHHHHHHhcCCCcEEEeChhHHHhchhcCc----ccCCCceEE
Q 014666 238 IVLCTTEE-SADQGFHMAKFISHCARLDSSMENGGVSSKALEDVSNAPIGMLIATPSEVLQHIEDRN----VSCDDIRYV 312 (420)
Q Consensus 238 Lil~Ptre-La~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l~~~~~IlV~TP~~L~~~l~~~~----~~l~~l~~l 312 (420)
+++.++.+ ++......+.......+--+..+.||. ||..+.+.|.... ++++++.++
T Consensus 4 ~~~~~~~~~l~~~aA~~i~~~i~~~~~~~l~lsgGs------------------tp~~~~~~L~~~~~~~~~~w~~v~~f 65 (238)
T 1y89_A 4 HKIFPTADAVVKSLADDMLAYSQQGQPVHISLSGGS------------------TPKMLFKLLASQPYANDIQWKNLHFW 65 (238)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTSSCEEEEECCSH------------------HHHHHHHHHTSTTHHHHSCGGGEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHhCCCEEEEECCCc------------------cHHHHHHHHHhhhhccCCChhHeEEE
Confidence 56666655 666666666555433222233444444 4555555554332 667788888
Q ss_pred EecCc
Q 014666 313 VLDEA 317 (420)
Q Consensus 313 VlDEa 317 (420)
-+||-
T Consensus 66 ~~DEr 70 (238)
T 1y89_A 66 WGDER 70 (238)
T ss_dssp ESEEE
T ss_pred eceec
Confidence 88875
No 478
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=32.90 E-value=20 Score=32.15 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
.|.-+.+.+|+|+|||..+-+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~ 45 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLAR 45 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHH
No 479
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=32.87 E-value=20 Score=32.59 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=32.0
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeecc
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAI 357 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl 357 (420)
+.+-++|++||.-.-||......+..++..+.. ..-.+++++..-
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-------~~g~tviivtHd 216 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPE-------WASRTVLLITQQ 216 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT-------TTTSEEEEECSC
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHh-------hcCCEEEEEeCC
Confidence 456789999999999988778888888877642 112466665543
No 480
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=32.69 E-value=20 Score=32.27 Aligned_cols=45 Identities=29% Similarity=0.245 Sum_probs=33.0
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
+.+-++|++||.-.-||......+..++..+.. .-.+|+++..-.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--------~g~tiiivtHd~ 206 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--------EGLTILVSSHNM 206 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--------TTCEEEEEECCH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh--------CCCEEEEEcCCH
Confidence 456789999999999988778888888877643 224667665543
No 481
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=32.29 E-value=1.3e+02 Score=32.90 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=50.0
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHhhc-----------------------------------cCCCceecccCCCChHHHHH
Q 014666 235 PRAIVLCTTEESADQGFHMAKFISH-----------------------------------CARLDSSMENGGVSSKALED 279 (420)
Q Consensus 235 ~~~Lil~PtreLa~Qi~~~~~~l~~-----------------------------------~~~i~~~~~~gg~~~~~~~~ 279 (420)
..+||.++|+.-|..+...+..+.. .....+..++||.....+..
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~ 416 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKEL 416 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHH
Confidence 4699999999998887766643211 11224678889988765443
Q ss_pred Hh----cCCCcEEEeChhHHHhchhcCcccCCCceEEEecCcc
Q 014666 280 VS----NAPIGMLIATPSEVLQHIEDRNVSCDDIRYVVLDEAD 318 (420)
Q Consensus 280 ~l----~~~~~IlV~TP~~L~~~l~~~~~~l~~l~~lVlDEaD 318 (420)
.. ....+|||||--. ..++++.. ..+|+....
T Consensus 417 v~~~F~~G~~kVLvAT~~~------a~GIDiP~-~~VVi~~~~ 452 (997)
T 4a4z_A 417 IEILFSKGFIKVLFATETF------AMGLNLPT-RTVIFSSIR 452 (997)
T ss_dssp HHHHHHTTCCSEEEECTHH------HHSCCCCC-SEEEESCSE
T ss_pred HHHHHHCCCCcEEEEchHh------hCCCCCCC-ceEEEeccc
Confidence 32 3458999999842 23566777 666664443
No 482
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=32.22 E-value=16 Score=31.99 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCCchhH
Q 014666 177 NGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla 194 (420)
.|.-+.+.|+.|||||..
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 455689999999999974
No 483
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=32.06 E-value=19 Score=33.18 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.2
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
=+.+.|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999753
No 484
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=32.04 E-value=18 Score=30.54 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.7
Q ss_pred cEEEEccCCCCchhH
Q 014666 180 SVVLSSGSGSGRTLA 194 (420)
Q Consensus 180 dvl~~a~TGsGKTla 194 (420)
-+++.+++|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478899999999864
No 485
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=31.95 E-value=17 Score=30.60 Aligned_cols=15 Identities=20% Similarity=0.054 Sum_probs=12.5
Q ss_pred cEEEEccCCCCchhH
Q 014666 180 SVVLSSGSGSGRTLA 194 (420)
Q Consensus 180 dvl~~a~TGsGKTla 194 (420)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999974
No 486
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=31.90 E-value=15 Score=39.15 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.6
Q ss_pred hcCCcEEEEccCCCCchhHh
Q 014666 176 LNGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla~ 195 (420)
..+..+++.+|+|+|||+..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 34678999999999999753
No 487
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=31.72 E-value=21 Score=32.27 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=0.0
Q ss_pred cCCcEEEEccCCCCchhHhHH
Q 014666 177 NGKSVVLSSGSGSGRTLAYLL 197 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~l 197 (420)
.|.-+.+.+|+|+|||...-+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~ 69 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRC 69 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHHHH
No 488
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=31.60 E-value=22 Score=32.56 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=25.1
Q ss_pred CCCceEEEecCcchhhccCCHHHHHHHHHHch
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISKILNPLK 337 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~ 337 (420)
+.+-++|++||.=.-||......+..++..+.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 208 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLS 208 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 34568999999998888877777777777664
No 489
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=31.35 E-value=14 Score=34.46 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=29.0
Q ss_pred CCceEEEecCcchhhccCCHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 307 DDIRYVVLDEADTLFDRGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 307 ~~l~~lVlDEaD~~l~~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
.+-++||+||+=.-||......+..++..+.. + .++++.+.
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--------~-~Tvi~itH 247 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCA--------N-RTTIVVAH 247 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--------T-SEEEEECC
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--------C-CEEEEEEc
Confidence 35689999999888887767777777766542 3 46666554
No 490
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=31.25 E-value=18 Score=33.03 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=19.6
Q ss_pred HHHHHHHHHHchhhhcccCCCCceEEEEeeccc
Q 014666 326 GPEISKILNPLKDSALKSNGQGFQTILVTAAIA 358 (420)
Q Consensus 326 ~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SATl~ 358 (420)
.+.+..++..|.. .+.++.++|+...
T Consensus 190 ~~g~~e~L~~L~~-------~g~~~~v~T~k~~ 215 (301)
T 1ltq_A 190 NPMVVELSKMYAL-------MGYQIVVVSGRES 215 (301)
T ss_dssp CHHHHHHHHHHHH-------TTCEEEEEECSCC
T ss_pred ChHHHHHHHHHHH-------CCCeEEEEeCCCc
Confidence 4677888888875 4678888888764
No 491
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=30.53 E-value=21 Score=33.39 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCCchhHhH
Q 014666 177 NGKSVVLSSGSGSGRTLAYL 196 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~~ 196 (420)
.++-+++.+++|+|||....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34558889999999997644
No 492
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=30.46 E-value=18 Score=32.90 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=13.2
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
.+.+.|++|+|||...
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999653
No 493
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=30.45 E-value=32 Score=31.60 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=0.0
Q ss_pred EEEecCcchhhc------cCCHHHHHHHHHHchhhhcccCCCCceEEEEeec
Q 014666 311 YVVLDEADTLFD------RGFGPEISKILNPLKDSALKSNGQGFQTILVTAA 356 (420)
Q Consensus 311 ~lVlDEaD~~l~------~~~~~~l~~Il~~l~~~~~~~~~~~~Q~v~~SAT 356 (420)
+|||||+|.+.+ ..+...+..++...+ +..+|+.+..
T Consensus 131 vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~---------~~~~il~g~~ 173 (350)
T 2qen_A 131 IVAFDEAQYLRFYGSRGGKELLALFAYAYDSLP---------NLKIILTGSE 173 (350)
T ss_dssp EEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCT---------TEEEEEEESS
T ss_pred EEEEeCHHHHhccCccchhhHHHHHHHHHHhcC---------CeEEEEECCc
No 494
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=30.38 E-value=2.2e+02 Score=25.39 Aligned_cols=76 Identities=7% Similarity=0.059 Sum_probs=50.5
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHhhccCCCceecccCCCChHHHHHHh---cC--CCc-EEEeChhHHHhchhcCcccCC
Q 014666 234 HPRAIVLCTTEESADQGFHMAKFISHCARLDSSMENGGVSSKALEDVS---NA--PIG-MLIATPSEVLQHIEDRNVSCD 307 (420)
Q Consensus 234 ~~~~Lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~--~~~-IlV~TP~~L~~~l~~~~~~l~ 307 (420)
+.++||.+.++..+..+...+... .++.+..+.|+.+.......+ +. .+. +||+|-. ...++++.
T Consensus 112 ~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~------~g~Glnl~ 182 (271)
T 1z5z_A 112 GDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA------GGFGINLT 182 (271)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT------TCCCCCCT
T ss_pred CCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh------hcCCcCcc
Confidence 457999999999888887777652 266788889988765443332 22 345 5566543 13467788
Q ss_pred CceEEEecCcc
Q 014666 308 DIRYVVLDEAD 318 (420)
Q Consensus 308 ~l~~lVlDEaD 318 (420)
.+.++|+=+.+
T Consensus 183 ~a~~VI~~d~~ 193 (271)
T 1z5z_A 183 SANRVIHFDRW 193 (271)
T ss_dssp TCSEEEECSCC
T ss_pred cCCEEEEECCC
Confidence 88888765444
No 495
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=30.31 E-value=18 Score=33.70 Aligned_cols=19 Identities=5% Similarity=0.020 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCCchhHh
Q 014666 177 NGKSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 177 ~g~dvl~~a~TGsGKTla~ 195 (420)
.|.-+.+.|++|||||...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 4556889999999999754
No 496
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=30.29 E-value=18 Score=30.71 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.6
Q ss_pred hcCCcEEEEccCCCCchhH
Q 014666 176 LNGKSVVLSSGSGSGRTLA 194 (420)
Q Consensus 176 ~~g~dvl~~a~TGsGKTla 194 (420)
..|.-+++.|++|+|||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp SCSEEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3466799999999999954
No 497
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=29.92 E-value=19 Score=32.85 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.2
Q ss_pred CcEEEEccCCCCchhHh
Q 014666 179 KSVVLSSGSGSGRTLAY 195 (420)
Q Consensus 179 ~dvl~~a~TGsGKTla~ 195 (420)
.-+++.|+.|||||...
T Consensus 76 ~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35899999999999764
No 498
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.81 E-value=22 Score=33.04 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=0.0
Q ss_pred EEEEccCCCCchhHh
Q 014666 181 VVLSSGSGSGRTLAY 195 (420)
Q Consensus 181 vl~~a~TGsGKTla~ 195 (420)
.++.+++|+|||...
T Consensus 27 ~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 27 TAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEECCTTTCSTHHH
T ss_pred EEEECCCCCcHHHHH
No 499
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=29.76 E-value=24 Score=32.48 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=19.0
Q ss_pred CCCceEEEecCcchhhccCCHHHHHH
Q 014666 306 CDDIRYVVLDEADTLFDRGFGPEISK 331 (420)
Q Consensus 306 l~~l~~lVlDEaD~~l~~~~~~~l~~ 331 (420)
+.+-++|++||.-.-||......+..
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~i~~ 200 (290)
T 2bbs_A 175 YKDADLYLLDSPFGYLDVLTEKEIFE 200 (290)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HCCCCEEEEECCcccCCHHHHHHHHH
Confidence 35568999999988887665555554
No 500
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=29.66 E-value=19 Score=32.00 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.7
Q ss_pred cEEEEccCCCCchhHh
Q 014666 180 SVVLSSGSGSGRTLAY 195 (420)
Q Consensus 180 dvl~~a~TGsGKTla~ 195 (420)
-+.+.|+.|||||...
T Consensus 24 iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC 39 (252)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999764
Done!