BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014670
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
pdb|1HYO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
pdb|2HZY|A Chain A, Mouse Fumarylacetoacetate Hydrolase Complexes With A
Transition-State Mimic Of The Complete Substrate
pdb|2HZY|B Chain B, Mouse Fumarylacetoacetate Hydrolase Complexes With A
Transition-State Mimic Of The Complete Substrate
Length = 421
Score = 484 bits (1246), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/416 (56%), Positives = 288/416 (69%), Gaps = 4/416 (0%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K
Sbjct: 4 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 61
Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP
Sbjct: 62 HVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPA 121
Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 183
IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP GQ
Sbjct: 122 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQ 181
Query: 184 FAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243
+ LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSARDI
Sbjct: 182 MRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDI 241
Query: 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 303
Q WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI+L
Sbjct: 242 QQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINL 301
Query: 304 EVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESL 363
V +K G + + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PES
Sbjct: 302 SVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESF 361
Query: 364 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
G +LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 362 GSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
pdb|1QQJ|B Chain B, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
Length = 419
Score = 484 bits (1246), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/416 (56%), Positives = 288/416 (69%), Gaps = 4/416 (0%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K
Sbjct: 2 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 59
Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP
Sbjct: 60 HVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPA 119
Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 183
IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP GQ
Sbjct: 120 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQ 179
Query: 184 FAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243
+ LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSARDI
Sbjct: 180 MRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDI 239
Query: 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 303
Q WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI+L
Sbjct: 240 QQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINL 299
Query: 304 EVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESL 363
V +K G + + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PES
Sbjct: 300 SVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESF 359
Query: 364 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
G +LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 360 GSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 415
>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
pdb|1QCO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
Length = 423
Score = 484 bits (1245), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/416 (56%), Positives = 288/416 (69%), Gaps = 4/416 (0%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K
Sbjct: 4 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 61
Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP
Sbjct: 62 HVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPA 121
Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 183
IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP GQ
Sbjct: 122 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQ 181
Query: 184 FAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243
+ LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSARDI
Sbjct: 182 MRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDI 241
Query: 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 303
Q WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI+L
Sbjct: 242 QQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINL 301
Query: 304 EVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESL 363
V +K G + + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PES
Sbjct: 302 SVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESF 361
Query: 364 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
G +LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 362 GSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>pdb|1QCN|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
pdb|1QCN|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Length = 421
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 232/416 (55%), Positives = 278/416 (66%), Gaps = 4/416 (0%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I LF GP L K
Sbjct: 4 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 61
Query: 64 DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
F + LN F LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ LP
Sbjct: 62 HVFDETTLNNFXGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATXHLPA 121
Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 183
IGDYTDF+SS HA N G FRG NA+ NW HLP+ YHGRASS+V+SGT I RP GQ
Sbjct: 122 TIGDYTDFYSSRQHATNVGIXFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPXGQ 181
Query: 184 FAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243
+ LD ELE A VGPGN G+PI +++A +HIFG +L NDWSARDI
Sbjct: 182 XRPDNSKPPVYGACRLLDXELEXAFFVGPGNRFGEPIPISKAHEHIFGXVLXNDWSARDI 241
Query: 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 303
Q WEYVPLGPFLGKSFGTT+SPW+V DAL PF +PKQDP+PLPYL +DI+L
Sbjct: 242 QQWEYVPLGPFLGKSFGTTISPWVVPXDALXPFVVPNPKQDPKPLPYLCHSQPYTFDINL 301
Query: 304 EVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESL 363
V +K G + + RSNFK+ YWT QQL HH++NGCNLR GDLL +GTISG +PES
Sbjct: 302 SVSLKGEGXSQAATICRSNFKHXYWTXLQQLTHHSVNGCNLRPGDLLASGTISGSDPESF 361
Query: 364 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
G LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 362 GSXLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>pdb|3R6O|A Chain A, Crystal Structure Of A Probable
2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From
Mycobacterium Abscessus
Length = 329
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 198 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243
LD+E+E+A V+G + G I+ ++A H+ G ML ND +ARD+
Sbjct: 153 HALDYEIEIAVVIG---KPGYRIERSQAIKHVAGYMLANDITARDV 195
>pdb|2DFU|A Chain A, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|B Chain B, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|C Chain C, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|D Chain D, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
Length = 264
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 14/69 (20%)
Query: 198 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ-----------AW 246
++L +E E+A VVG + + + +A DH+ G + D +ARD+Q A
Sbjct: 109 EELHYEGELAVVVG---DRMRHVPPEKALDHVLGYTVAVDITARDVQKKDLQWVRAKSAD 165
Query: 247 EYVPLGPFL 255
+++PLGP+L
Sbjct: 166 KFLPLGPWL 174
>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|B Chain B, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|C Chain C, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|D Chain D, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
Length = 246
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 200 LDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARD---------IQAW---E 247
+ +E+E+A VVG K + +A D++ G + ND ARD I+A
Sbjct: 94 VHYEVELAVVVG---RPMKRVRAKDALDYVLGYTIANDLVARDYVTNTFRPPIRAKGRDT 150
Query: 248 YVPLGPFL 255
++PLGPFL
Sbjct: 151 FLPLGPFL 158
>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate
Isomerase From Mycobacterium Marinum
Length = 268
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 200 LDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQA----WEYVPLGPFL 255
+ FE E+A V+G K + +A D+I G + ND SARD Q W
Sbjct: 118 VHFEGELAIVIG---RPCKDVSAAQAVDNILGYTIGNDVSARDQQKSDGQWTRAK----- 169
Query: 256 GKSFGTTLSPWIVT 269
G + PWIVT
Sbjct: 170 GHDTFCPVGPWIVT 183
>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458
pdb|4DBF|B Chain B, Crystal Structures Of Cg1458
pdb|4DBH|A Chain A, Crystal Structure Of Cg1458 With Inhibitor
pdb|4DBH|B Chain B, Crystal Structure Of Cg1458 With Inhibitor
Length = 288
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 27/133 (20%)
Query: 113 PMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWF-HLPIAYHGRASSVV 171
P+ V +L PM ++A + +F+ A ++P F P A G S +
Sbjct: 68 PLKDVRLLAPMLPSKVVAI--GRNYADHVAEVFKKSAESLPPTLFLKPPTAVTGPESPIR 125
Query: 172 ISGTDIVRPRGQFAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFG 231
I FA K++FE E+A V+G + K + ++ + G
Sbjct: 126 IP---------SFA------------TKVEFEGELAVVIG---KPCKNVKADDWKSVVLG 161
Query: 232 VMLMNDWSARDIQ 244
++ND S+RD+Q
Sbjct: 162 FTIINDVSSRDLQ 174
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 264 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 307
+P+ L+ L PF +S ++ P + YL EK++ Y L+ QI
Sbjct: 177 TPFEKKLNGLYPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQI 220
>pdb|3S9I|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With 2-4-dioxo-4-phenylbutanoic Acid
Inhibitor
pdb|3S9Z|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-bromophenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SAD|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-mehtylphenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SAZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(3-bromophenyl)-2,4-dioxobutanoic Acid Inhibitor
pdb|3SB0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Malate
Synthase In Complex With
4-(2-chloro-6-fluoro-3-methylphenyl)-2,4-dioxobutanoic
Acid Inhibitor
Length = 741
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 335 AHHTINGCNLRSGDLL----GTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDG 390
A +N N R G L GT I PE+ G T+N + + + RKFL+D
Sbjct: 124 ARFALNAANARWGSLYDALYGTDVI----PETDGAEKGPTYNKVRGDKVIAYARKFLDDS 179
Query: 391 DEVTFTGFCKGNGYTVGFG 409
++ F G+TV G
Sbjct: 180 VPLSSGSFGDATGFTVQDG 198
>pdb|1N8I|A Chain A, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
pdb|1N8W|A Chain A, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
pdb|1N8W|B Chain B, Biochemical And Structural Studies Of Malate Synthase From
Mycobacterium Tuberculosis
Length = 741
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 335 AHHTINGCNLRSGDLL----GTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDG 390
A +N N R G L GT I PE+ G T+N + + + RKFL+D
Sbjct: 124 ARFALNAANARWGSLYDALYGTDVI----PETDGAEKGPTYNKVRGDKVIAYARKFLDDS 179
Query: 391 DEVTFTGFCKGNGYTVGFG 409
++ F G+TV G
Sbjct: 180 VPLSSGSFGDATGFTVQDG 198
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 264 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 307
+P+ L+ L PF +S ++ P + YL EK++ Y L+ QI
Sbjct: 177 TPFEKKLNGLFPFRVNSAQRTPVQMMYLREKLNIGYIEDLKAQI 220
>pdb|2GQ3|A Chain A, Mycobacterium Tuberculosis Malate Synthase In Complex With
Magnesium, Malate, And Coenzyme A
pdb|2GQ3|B Chain B, Mycobacterium Tuberculosis Malate Synthase In Complex With
Magnesium, Malate, And Coenzyme A
Length = 729
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 335 AHHTINGCNLRSGDLL----GTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDG 390
A +N N R G L GT I PE+ G T+N + + + RKFL+D
Sbjct: 126 ARFALNAANARWGSLYDALYGTDVI----PETDGAEKGPTYNKVRGDKVIAYARKFLDDS 181
Query: 391 DEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 420
++ F G+TV G++V + P
Sbjct: 182 VPLSSGSFGDATGFTV----QDGQLVVALP 207
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 21/125 (16%)
Query: 259 FGTTLSPWIVTLDALEPFA---CDSPKQDPQPLPYLAEKISKNYDIS----------LEV 305
FG +P V A+ D DP+ P L +NY++S +
Sbjct: 560 FGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSE 619
Query: 306 QIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLG--TGTISGPEPESL 363
QI AGKE S SN K++ + L T++G N+ D +G I G E L
Sbjct: 620 QISTAGKEASGT---SNMKFM---MNGALTLGTMDGANVEIVDSVGEENAYIFGARVEEL 673
Query: 364 GCLLE 368
L E
Sbjct: 674 PALRE 678
>pdb|3UEK|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase
pdb|3UEL|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|B Chain B, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|C Chain C, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
Length = 588
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 25/132 (18%)
Query: 286 QPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLR 345
QP+P L +K++ + +S E C R N K ++ ++ IN L
Sbjct: 222 QPIPLLKQKMNHSVTMSQEQIASLLANAFFCTFPRRNAK----MKSEYSSYPDINFNRLF 277
Query: 346 SGDLLGTGTISGPEPESLGCLLEL--TWNGQKPLSLDGFTRKFLEDGDE----------- 392
G S +PE L L +KP L FTR+ LED E
Sbjct: 278 EGR-------SSRKPEKLKTLFCYFRRVTEKKPTGLVTFTRQSLEDFPEWERCDKPLTRL 330
Query: 393 -VTFTGFCKGNG 403
VT+ G +GNG
Sbjct: 331 HVTYEGTIEGNG 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,487,041
Number of Sequences: 62578
Number of extensions: 583073
Number of successful extensions: 1020
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 17
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)