Query 014670
Match_columns 420
No_of_seqs 288 out of 2047
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:23:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02856 fumarylacetoacetase 100.0 2E-106 4E-111 822.6 41.1 418 3-420 5-424 (424)
2 TIGR01266 fum_ac_acetase fumar 100.0 3E-104 7E-109 805.4 38.3 413 5-419 1-415 (415)
3 KOG2843 Fumarylacetoacetase [C 100.0 9.5E-89 2.1E-93 645.3 20.3 414 4-419 1-417 (420)
4 COG0179 MhpD 2-keto-4-pentenoa 100.0 2.4E-58 5.2E-63 447.5 21.3 214 114-418 47-265 (266)
5 TIGR02303 HpaG-C-term 4-hydrox 100.0 1.3E-52 2.8E-57 404.9 23.3 214 109-417 26-244 (245)
6 KOG1535 Predicted fumarylaceto 100.0 2.1E-49 4.5E-54 362.0 16.9 199 116-373 2-206 (217)
7 PRK15203 4-hydroxyphenylacetat 100.0 1.6E-46 3.4E-51 388.3 21.8 192 134-418 12-206 (429)
8 PRK10691 hypothetical protein; 100.0 5.3E-45 1.2E-49 346.6 21.7 191 134-416 26-219 (219)
9 PRK15203 4-hydroxyphenylacetat 100.0 2.4E-44 5.3E-49 372.0 22.7 206 119-418 215-425 (429)
10 PRK12764 hypothetical protein; 100.0 1.7E-42 3.7E-47 364.1 22.2 195 134-418 31-229 (500)
11 PF01557 FAA_hydrolase: Fumary 100.0 1.8E-41 3.9E-46 321.5 15.4 209 131-416 6-218 (218)
12 TIGR02305 HpaG-N-term 4-hydrox 100.0 1.9E-40 4.1E-45 312.5 20.3 194 134-415 10-205 (205)
13 TIGR03220 catechol_dmpE 2-oxop 99.9 7.6E-22 1.7E-26 191.9 15.4 169 160-375 73-249 (255)
14 PRK11342 mhpD 2-keto-4-penteno 99.8 8.8E-20 1.9E-24 178.2 14.9 155 198-417 100-261 (262)
15 PF09298 FAA_hydrolase_N: Fuma 99.7 1.7E-18 3.7E-23 147.2 6.6 105 18-122 1-107 (107)
16 TIGR02312 HpaH 2-oxo-hepta-3-e 99.6 2.1E-15 4.6E-20 147.8 14.0 170 159-375 77-260 (267)
17 COG3970 Fumarylacetoacetate (F 99.6 1.1E-14 2.3E-19 141.2 13.5 185 160-419 169-357 (379)
18 TIGR03218 catechol_dmpH 4-oxal 99.3 1.2E-10 2.6E-15 114.1 15.4 147 199-376 105-258 (263)
19 COG3971 2-keto-4-pentenoate hy 99.0 2.6E-09 5.7E-14 102.6 9.6 148 200-378 103-258 (264)
20 COG3802 GguC Uncharacterized p 98.5 2.4E-06 5.3E-11 81.9 13.1 140 160-355 141-291 (333)
21 PF11010 DUF2848: Protein of u 97.9 0.00027 6E-09 65.9 12.8 169 135-372 12-182 (194)
22 PF10370 DUF2437: Domain of un 88.6 0.38 8.2E-06 35.3 2.4 26 20-47 1-26 (50)
23 PRK06488 sulfur carrier protei 62.7 34 0.00075 25.9 6.4 19 314-337 6-24 (65)
24 TIGR00008 infA translation ini 48.3 30 0.00064 27.2 3.9 30 364-398 27-56 (68)
25 COG0361 InfA Translation initi 47.7 23 0.00049 28.4 3.2 15 384-398 44-58 (75)
26 cd05790 S1_Rrp40 S1_Rrp40: Rrp 45.1 51 0.0011 27.0 5.0 48 345-397 5-60 (86)
27 PRK12442 translation initiatio 44.3 33 0.00071 28.3 3.7 31 363-398 28-58 (87)
28 smart00652 eIF1a eukaryotic tr 44.1 39 0.00084 27.5 4.1 16 383-398 40-55 (83)
29 cd05705 S1_Rrp5_repeat_hs14 S1 42.6 38 0.00083 26.4 3.9 60 344-406 1-71 (74)
30 PRK08582 hypothetical protein; 40.7 34 0.00073 30.4 3.6 65 342-409 1-72 (139)
31 TIGR03220 catechol_dmpE 2-oxop 39.5 31 0.00066 33.7 3.5 22 384-413 232-253 (255)
32 cd05793 S1_IF1A S1_IF1A: Trans 39.3 50 0.0011 26.4 4.1 16 383-398 35-50 (77)
33 cd05694 S1_Rrp5_repeat_hs2_sc2 39.3 37 0.00081 26.6 3.3 60 344-406 2-64 (74)
34 PF00575 S1: S1 RNA binding do 36.1 38 0.00082 25.8 2.9 51 344-397 2-59 (74)
35 PF01176 eIF-1a: Translation i 35.3 28 0.0006 26.7 1.9 16 383-398 38-53 (65)
36 COG0146 HyuB N-methylhydantoin 32.4 1.3E+02 0.0028 33.0 7.0 42 314-356 48-94 (563)
37 KOG1379 Serine/threonine prote 31.3 23 0.0005 35.9 1.1 45 313-358 197-256 (330)
38 PRK04012 translation initiatio 30.9 79 0.0017 26.7 4.1 16 383-398 56-71 (100)
39 cd04456 S1_IF1A_like S1_IF1A_l 30.2 92 0.002 25.0 4.2 16 383-398 35-50 (78)
40 COG1096 Predicted RNA-binding 29.2 1.5E+02 0.0032 28.0 5.9 54 343-396 7-71 (188)
41 PRK04980 hypothetical protein; 29.1 81 0.0018 26.8 3.9 25 372-396 17-41 (102)
42 cd03701 IF2_IF5B_II IF2_IF5B_I 28.9 63 0.0014 26.7 3.2 19 340-358 23-41 (95)
43 COG1339 Transcriptional regula 28.4 47 0.001 31.6 2.5 29 364-398 185-213 (214)
44 PRK05807 hypothetical protein; 28.0 79 0.0017 27.9 3.9 51 342-397 1-59 (136)
45 PLN00208 translation initiatio 25.9 83 0.0018 28.4 3.6 16 383-398 67-82 (145)
46 cd04452 S1_IF2_alpha S1_IF2_al 25.5 77 0.0017 24.1 3.0 50 345-397 2-60 (76)
47 PTZ00329 eukaryotic translatio 24.4 92 0.002 28.4 3.6 29 364-398 54-82 (155)
48 cd04454 S1_Rrp4_like S1_Rrp4_l 23.5 96 0.0021 24.2 3.3 50 343-397 3-61 (82)
49 PRK07252 hypothetical protein; 23.2 97 0.0021 26.8 3.4 59 345-406 2-68 (120)
50 cd01764 Urm1 Urm1-like ubuitin 22.9 2.4E+02 0.0052 23.2 5.6 57 329-395 30-87 (94)
51 cd04461 S1_Rrp5_repeat_hs8_sc7 22.9 83 0.0018 24.7 2.8 53 342-397 10-69 (83)
52 TIGR00523 eIF-1A eukaryotic/ar 21.2 1.5E+02 0.0031 25.0 4.0 15 383-397 54-68 (99)
53 KOG0666 Cyclin C-dependent kin 21.2 94 0.002 32.0 3.3 76 318-401 129-207 (438)
54 cd03702 IF2_mtIF2_II This fami 20.2 79 0.0017 26.3 2.2 18 340-357 23-40 (95)
55 COG0776 HimA Bacterial nucleoi 20.2 84 0.0018 26.3 2.3 25 385-419 35-59 (94)
No 1
>PLN02856 fumarylacetoacetase
Probab=100.00 E-value=1.8e-106 Score=822.61 Aligned_cols=418 Identities=75% Similarity=1.301 Sum_probs=386.2
Q ss_pred cccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhCCchhH
Q 014670 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAW 82 (420)
Q Consensus 3 ~~s~~~~~~~~~f~~~n~p~~~f~~~~~~~~r~Gv~~gd~viDL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~ 82 (420)
++|||+++++|||||+|||||+||+.+++.+|+||++||+|+||+++...+++.+.....+.+|.+++||+|+++|+..|
T Consensus 5 ~~swv~~~~~~~F~i~NlP~Gvfs~~~~~~~r~gvaigd~vldl~~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~ 84 (424)
T PLN02856 5 LKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLLSDSDCFSQPTLNKFMAMGRPAW 84 (424)
T ss_pred ccccccCCCCCCCCccccCeeEEECCCCCCceeEEEeCCEEEeHHHHHhcCCCCcccccccccccCcCHHHHHhCCHHHH
Confidence 57999999999999999999999998777999999999999999999877666542212246899999999999999999
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhcccccccCCCcEecCCcccCCcceEeecHHHHHHhccccCCCCCCCCCCCCCCcee
Q 014670 83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIA 162 (420)
Q Consensus 83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~l~~P~~~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~ 162 (420)
+++|+.|+.++......++++..+....++|+++|+|++|+.+++|+||++|++|++|+|+.|++++++++|+|++.|++
T Consensus 85 ~~~R~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~ 164 (424)
T PLN02856 85 KEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIG 164 (424)
T ss_pred HHHHHHHHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCcccccCCCE
Confidence 99999999999877665555566666789999999999999999999999999999999999888878889999999999
Q ss_pred eecCCceeeeCCCceeCCCCCcCC-CCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchh
Q 014670 163 YHGRASSVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR 241 (420)
Q Consensus 163 f~k~~ssvv~~g~~I~~P~~~~~~-~~~~~~~~~~s~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaR 241 (420)
|+|++|||+++|++|++|.+|+++ .+...|.|++++++|||+|||+||||++++|++|++++|++||||||++||||||
T Consensus 165 y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SAR 244 (424)
T PLN02856 165 YHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSAR 244 (424)
T ss_pred EcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhh
Confidence 999999999999999999988765 3334488999999999999999999998889999999999999999999999999
Q ss_pred hhhhhhcCCCCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEec
Q 014670 242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS 321 (420)
Q Consensus 242 d~Q~~~~~~lg~~~gKsfdt~iGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~ 321 (420)
|+|.|||+++|||+||+|+|+|||||||.|+++++++..+.++++.++||++.++.+++|+|+|+++.+++.||+++|++
T Consensus 245 DiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~ 324 (424)
T PLN02856 245 DIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRS 324 (424)
T ss_pred hhhhhhcccCCcccccCCCCCCcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeEEcC
Confidence 99999999999999999999999999999999999998899999999999999999999999998876665688999999
Q ss_pred chhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCC-CCccCCCCCEEEEEEEEe
Q 014670 322 NFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCK 400 (420)
Q Consensus 322 ~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~L~~GD~V~~~~~~~ 400 (420)
|+++|||+++|||+|++|++|||+|||||+||||+|+++.+.||.+|++++|++++++.++ .++||+|||+|+|+++|+
T Consensus 325 nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~llElt~~G~~p~~l~~g~~r~fL~dGD~V~l~g~~~ 404 (424)
T PLN02856 325 NFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCK 404 (424)
T ss_pred CHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCEEEEEeCCccceEeccCCccccCCCCCEEEEEEEEC
Confidence 9999999999999987799999999999999999999999999999999999999999888 799999999999999999
Q ss_pred CCCceeeeeeeeeEEeeCCC
Q 014670 401 GNGYTVGFGTCSGKIVPSTP 420 (420)
Q Consensus 401 ~~~~~~g~G~~~~~v~~~~~ 420 (420)
++|.+||||+|+++|+||++
T Consensus 405 ~~g~~igfG~~~g~v~pa~~ 424 (424)
T PLN02856 405 GDGYRVGFGTCSGKVLPALP 424 (424)
T ss_pred CCCccEeeeeeeeEEecCCC
Confidence 99999999999999999975
No 2
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=100.00 E-value=3e-104 Score=805.38 Aligned_cols=413 Identities=61% Similarity=1.103 Sum_probs=381.0
Q ss_pred cccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCC-CccCCCccCcccHHHHHhCCchhHH
Q 014670 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGP-ILKDSDCFLQPNLNKFLSLGRPAWK 83 (420)
Q Consensus 5 s~~~~~~~~~f~~~n~p~~~f~~~~~~~~r~Gv~~gd~viDL~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~g~~~~~ 83 (420)
|||++++||||||+|||||+|++..++.+|+||++||.|+||+++.. ++.+. ....+.+|.+++||+|+++|++.|+
T Consensus 1 swv~~~~~~~f~i~nlP~gvf~~~~~~~pR~gv~igd~vlDL~~~~~--~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~~ 78 (415)
T TIGR01266 1 SFVPVAENSDFPIQNLPYGVFSTQANSSPRIGVAIGDQILDLSVIAH--LFTGPALSKHQHVFDQSTLNAFMALGRPAWK 78 (415)
T ss_pred CccCCCCCCCCCccccCeEEEECCCCCCceeEEEECCEEEeHHHHHh--hhcCccccccccccCCCCHHHHHhCCHHHHH
Confidence 89999999999999999999999877799999999999999999864 33332 1223468889999999999999999
Q ss_pred HHHHHHHHHHhccchhhhhhhhhcccccccCCCcEecCCcccCCcceEeecHHHHHHhccccCCCCCCCCCCCCCCceee
Q 014670 84 EARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAY 163 (420)
Q Consensus 84 ~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~l~~P~~~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f 163 (420)
++|+.|+.++......++++..+.+..++|+++|+||+|+.+++|+||+|+++|++|+|+.|+++.++++|+|++.|++|
T Consensus 79 ~~R~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~v~l~lP~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y 158 (415)
T TIGR01266 79 EARARLQNLLSASQARLRDNAALRQRALTPQAEATMHLPAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGY 158 (415)
T ss_pred HHHHHHHHHhhcCCccccccccccccceeehhHceecCCccchhhhhhhchHHHHHHHHhhccCCCCCCCcccccCCcEe
Confidence 99999999988776666666666667899999999999999999999999999999999998888889999999999999
Q ss_pred ecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchhhh
Q 014670 164 HGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243 (420)
Q Consensus 164 ~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaRd~ 243 (420)
+|++|||+++|++|++|.+|.++.+...|.|.+++++|||+|||+||||.+++|++|++++|++||||||++|||||||+
T Consensus 159 ~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SARDi 238 (415)
T TIGR01266 159 HGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLDMELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSARDI 238 (415)
T ss_pred ccCCceEEcCCCceeCCCccccCCcccCCcccccCceEEEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcchhhh
Confidence 99999999999999999998766555568899999999999999999999888999999999999999999999999999
Q ss_pred hhhhcCCCCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecch
Q 014670 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNF 323 (420)
Q Consensus 244 Q~~~~~~lg~~~gKsfdt~iGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t 323 (420)
|.|||+|+|||+||+|+|+|||||||+|+|+++++..+.++++.++||++.++..++|+++|++|++++++.+++|++|+
T Consensus 239 Q~wE~~plgpf~~KsF~tsigPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~v~vnge~~~~~~~~q~~~~ 318 (415)
T TIGR01266 239 QAWEYVPLGPFLAKSFGTTISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLEVSLKGEGMSEPATICRSNF 318 (415)
T ss_pred hhhhccccCccccccCCCCCcCeEeccccccccccccccccccccccccccCCCcceeEEEEEEecCcCcccceEEcCCH
Confidence 99999999999999999999999999999999998888888999999999988888999999888765556679999999
Q ss_pred hhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCC-CCccCCCCCEEEEEEEEeCC
Q 014670 324 KYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCKGN 402 (420)
Q Consensus 324 ~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~L~~GD~V~~~~~~~~~ 402 (420)
++|||+++|||+|+++++|+|+|||||+||||+|+++.+.||.+|++++|+.+++|.++ .++||++||+|+|+++|.++
T Consensus 319 ~~M~ws~~qlIah~S~~g~tL~pGDLi~TGTpsG~~~~~~G~~lE~t~~g~~~v~l~~g~~r~fL~dGD~V~~~~~~~~~ 398 (415)
T TIGR01266 319 KHMYWTMLQQLAHHSVNGCNLRPGDLLGSGTISGSEPGSFGSMLELSWKGKKPIDVGQGETRTFLEDGDEVILRGHCQGE 398 (415)
T ss_pred HhcCcCHHHHHHHHhcCCcccCCCCEEEeCCCCCCcccCCCcEEEEEeCCeeeeecCCCCCCCCCCCCCEEEEEEEECCC
Confidence 99999999999998448999999999999999999999999999999999999999888 78999999999999999999
Q ss_pred CceeeeeeeeeEEeeCC
Q 014670 403 GYTVGFGTCSGKIVPST 419 (420)
Q Consensus 403 ~~~~g~G~~~~~v~~~~ 419 (420)
|.+||||+|+++|+||.
T Consensus 399 g~~igfGe~~g~i~pa~ 415 (415)
T TIGR01266 399 GYRVGFGECAGKVLPAL 415 (415)
T ss_pred CCcEeeeeeeeEEecCC
Confidence 99999999999999984
No 3
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.5e-89 Score=645.31 Aligned_cols=414 Identities=59% Similarity=1.048 Sum_probs=393.5
Q ss_pred ccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCC-ccCCCccCcccHHHHHhCCchhH
Q 014670 4 QSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI-LKDSDCFLQPNLNKFLSLGRPAW 82 (420)
Q Consensus 4 ~s~~~~~~~~~f~~~n~p~~~f~~~~~~~~r~Gv~~gd~viDL~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~g~~~~ 82 (420)
+|++.++.+++||++|+|||+|++..+..+++|+++||.|.+|..+.. ++++|. ....+.|.+++||+|+.++.++|
T Consensus 1 ~sf~~v~~~sdfpi~nlpygvfst~~d~~~~igvaIgdqIl~l~~i~~--lf~gp~l~~hQdvf~q~TLN~fMgL~~~AW 78 (420)
T KOG2843|consen 1 KSFVSVPQNSDFPIQNLPYGVFSTKADSSRHIGVAIGDQILNLAEIAN--LFDGPQLKAHQDVFKQSTLNAFMGLDFEAW 78 (420)
T ss_pred CCccccCCCCCCccccccccccccccCCCCcceeehhHHHHHHHHHHH--hhcCcchHHHHHHhhhhhHHHHhCCCHHHH
Confidence 589999999999999999999999999999999999999999988765 455554 35567889999999999999999
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhcccccccCCCcEecCCcccCCcceEeecHHHHHHhccccCCCCCCCCCCCCCCcee
Q 014670 83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIA 162 (420)
Q Consensus 83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~l~~P~~~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~ 162 (420)
.++|..+|.+++.+.+.++++..+++.+.+|-++++||.|-++++|+|||.+.+|+.++|..||++++++.|+|.+.|+.
T Consensus 79 ~eaR~~~Q~LLs~~~a~Lrdn~~Lr~~a~v~Qs~atmHLPAqIGDYTDFYSSihHATNVGIMFRgkeNALMPNW~hLPVG 158 (420)
T KOG2843|consen 79 DEARSQTQKLLSKGCAELRDNVDLRAVAIVPQSEATMHLPAQIGDYTDFYSSIHHATNVGIMFRGKENALMPNWRHLPVG 158 (420)
T ss_pred HHHHHHHHHHhhcchhhhccccceeeeeeeccccceeccchhhcchhhhhhhhhhccceeEEEeccccccCCcccccccc
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEc-CCCCCCCCCChhhHhhceeEEEEeeccchh
Q 014670 163 YHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVG-PGNELGKPIDVNEAADHIFGVMLMNDWSAR 241 (420)
Q Consensus 163 f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIG-k~~~~g~~is~e~A~~~I~Gyti~ND~SaR 241 (420)
|++++||||.+|++|+||-+|.+|.+...|.|++|+-+|+|+|+|++|| +.+.+|..|+.++|+++||||+++||||||
T Consensus 159 YHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMNDWSAR 238 (420)
T KOG2843|consen 159 YHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMNDWSAR 238 (420)
T ss_pred ccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEecccchh
Confidence 9999999999999999999998776666799999999999999999997 788899999999999999999999999999
Q ss_pred hhhhhhcCCCCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEec
Q 014670 242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS 321 (420)
Q Consensus 242 d~Q~~~~~~lg~~~gKsfdt~iGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~ 321 (420)
|||+|||+|||+|.+|||.|+++||+|+.++|.+|-.+.|.++|..++||++.+|-.++|.|.|.++++++....++.++
T Consensus 239 DIQkWEYVPLGPFlaKsfgTTvSPWVVp~~AL~Pf~v~Np~QdP~plpYL~hd~PftfDINL~Vslkpeg~~~~a~icKs 318 (420)
T KOG2843|consen 239 DIQKWEYVPLGPFLAKSFGTTVSPWVVPTAALKPFVVDNPPQDPEPLPYLRHDIPFTFDINLEVSLKPEGQNEDALICKS 318 (420)
T ss_pred hcccceeecccchhhhhcccccccceeeHhhcCccccCCCCCCCCCCcccccCCCceeeeeeEEEeccCCccccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886666789999
Q ss_pred chhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCC-CCccCCCCCEEEEEEEEe
Q 014670 322 NFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCK 400 (420)
Q Consensus 322 ~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~L~~GD~V~~~~~~~ 400 (420)
|.++|||++-|.++|++-.+|.|+|||++++||.+|..+..-|+++|++|.|.++++++++ .++||++||+|.+++.|+
T Consensus 319 NFKhlYWT~lQQlaHHtVnGCNLRpGDLlaSGTiSGpep~~yGSmLELsWkGtK~~~lg~g~tRKFL~DgDEVii~G~Ce 398 (420)
T KOG2843|consen 319 NFKHLYWTPLQQLAHHTVNGCNLRPGDLLASGTISGPEPDSYGSMLELSWKGTKTLELGGGKTRKFLQDGDEVIIRGHCE 398 (420)
T ss_pred cchhhhhhHHHHhhhcccccccCCccceeccccccCCCCcchhhhhhhhhcCceeeecCCchhhhhhhcCCeEEEEeeec
Confidence 9999999999999999999999999999999999999999999999999999999999988 799999999999999999
Q ss_pred CCCceeeeeeeeeEEeeCC
Q 014670 401 GNGYTVGFGTCSGKIVPST 419 (420)
Q Consensus 401 ~~~~~~g~G~~~~~v~~~~ 419 (420)
++|.+||||+|+++|+||-
T Consensus 399 knG~RIGFGeC~GkVLPA~ 417 (420)
T KOG2843|consen 399 KNGLRIGFGECVGKVLPAH 417 (420)
T ss_pred CCceEEecccccccccccc
Confidence 9999999999999999974
No 4
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-58 Score=447.47 Aligned_cols=214 Identities=31% Similarity=0.414 Sum_probs=190.6
Q ss_pred CCCcEecCCcccCCcceEee---cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcCCCCCC
Q 014670 114 MGKVEMLLPMEIGDYTDFFS---SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNS 190 (420)
Q Consensus 114 l~~v~l~~P~~~~~~~~~~~---~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~ 190 (420)
+.++++.+|+.++. ..||. |.+|++|++... + .+..|++|+|+++++++++++|.+|..
T Consensus 47 ~~~~~~~~~~~~~~-ki~cvG~NY~~Ha~E~~~~~---~------~p~~P~~F~K~~~a~~~~~~~i~~P~~-------- 108 (266)
T COG0179 47 LAEVRLLAPLPPPG-KIVCVGRNYADHAEEMGKDR---D------IPEEPVFFLKPPTAVIGPNDPIPLPPG-------- 108 (266)
T ss_pred ccccccccCCCCCC-cEEEEechHHHHHHHhccCC---C------CCCCCeeeccCcccccCCCCceECCCC--------
Confidence 67889999988654 23333 789999998641 1 235699999999999999999999976
Q ss_pred CCCCCCCCCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCCC--CCCccc
Q 014670 191 PPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIV 268 (420)
Q Consensus 191 ~~~~~~s~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt~--iGPwiv 268 (420)
+.++|||+||||||||+ |++|++++|++||+|||++||||+||+|.+++ ..+|+++|+|||| +|||||
T Consensus 109 ------s~~~dyE~ELavvIGk~---~~~v~~e~A~d~I~GYti~nD~T~Rd~Q~~~~-~~~w~~aK~~d~~~Pigp~iv 178 (266)
T COG0179 109 ------SKGLDYEGELAVVIGKR---GKDVSVEDALDYIAGYTIGNDVTARDLQMEEK-GRPWTRAKGFDTFAPVGPWIV 178 (266)
T ss_pred ------CCCcceeEEEEEEECCc---CCCCCHHHHHhhheEEeeeeecchhcchhhhh-cCCcccccccCCCCCceeEEe
Confidence 78899999999999999 99999999999999999999999999997643 3579999999996 999999
Q ss_pred cccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCC
Q 014670 269 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGD 348 (420)
Q Consensus 269 t~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S~~~tL~pGD 348 (420)
|.+++.+ ++++.|+++| |||++|++||++|+|+|++||+|+ |++|||+|||
T Consensus 179 ~~~e~~d--------------------~~~l~l~~~v--------NGe~~Q~g~t~~Mi~~i~~lI~~l-S~~~tL~pGD 229 (266)
T COG0179 179 TKDEISD--------------------PQNLPLSLRV--------NGEVRQRGNTSDMIFSIPELIAYL-SRFMTLEPGD 229 (266)
T ss_pred ccccCCC--------------------CccceEEEEE--------CCEEEecCcHHHcccCHHHHHHHH-hCCcccCCCC
Confidence 9998865 4568999999 999999999999999999999998 9999999999
Q ss_pred EEEcCCCCCCccCCCCceEEEEecCccccccCCCCCccCCCCCEEEEEEEEeCCCceeeeeeeeeEEeeC
Q 014670 349 LLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418 (420)
Q Consensus 349 vI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~ 418 (420)
||+||||+||| ||++||+|+++ ++ |||+|+|+|+.+
T Consensus 230 vI~TGTP~Gvg--------------------------~l~~GD~v~~~--ie------giG~l~n~v~~~ 265 (266)
T COG0179 230 VILTGTPSGVG--------------------------FLKPGDVVEVE--IE------GIGELENTVVKE 265 (266)
T ss_pred EEEeCCCCCcc--------------------------cCCCCCEEEEE--ec------ceeEEEEEEeeC
Confidence 99999999985 89999999998 67 999999999875
No 5
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=1.3e-52 Score=404.88 Aligned_cols=214 Identities=25% Similarity=0.355 Sum_probs=189.3
Q ss_pred cccccCCCcEecCCcccCCcceEee---cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcC
Q 014670 109 KSLVPMGKVEMLLPMEIGDYTDFFS---SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFA 185 (420)
Q Consensus 109 ~~~~~l~~v~l~~P~~~~~~~~~~~---~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~ 185 (420)
...+++++++|++|+.+++ ++|. |.+|++|++.. .| +.|++|+|+++|++++|++|.+|..
T Consensus 26 ~~~~~~~~v~ll~P~~p~k--i~~vg~Ny~~h~~e~~~~--------~p---~~P~~F~Kp~~s~~g~~~~i~~P~~--- 89 (245)
T TIGR02303 26 GRALPPEQVTWLPPFEPGT--IFALGLNYADHASELGFS--------PP---EEPLVFLKGNNTLTGHKGVTYRPKD--- 89 (245)
T ss_pred CCccccccceEcCCCCCCe--EEEEeCCHHHHHHHhCCC--------CC---CCCEEEEcCcceeeCCCCcEECCCC---
Confidence 3468999999999997542 4444 78999998742 22 5799999999999999999999975
Q ss_pred CCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCCC--C
Q 014670 186 PSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--L 263 (420)
Q Consensus 186 ~~~~~~~~~~~s~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt~--i 263 (420)
+..+|||+|||+||||+ ++++++++|++||+|||++||||+||+|...+ .+|.++|+|||| +
T Consensus 90 -----------~~~ld~E~EL~vvigk~---~~~v~~~~A~~~I~Gytv~nD~T~Rd~q~~~~--~~~~~aK~~D~~~pl 153 (245)
T TIGR02303 90 -----------VRFMHYECELAVVVGKT---AKNVKREDAMDYVLGYTIANDYAIRDYLENYY--RPNLRVKNRDTFTPI 153 (245)
T ss_pred -----------CCceeEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEeecchHHHHhhhc--CCcccccCCCCCEee
Confidence 67899999999999999 99999999999999999999999999997654 469999999997 9
Q ss_pred CCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcc
Q 014670 264 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCN 343 (420)
Q Consensus 264 GPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S~~~t 343 (420)
|||++|++++.+ +.++.|++++ ||+++|++++++|+|++++||+|+ |+.+|
T Consensus 154 Gp~i~t~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~t~~ml~~v~~Li~~l-s~~~t 204 (245)
T TIGR02303 154 GPWIVDKEDVED--------------------PMNLWLRTYV--------NGELTQEGNTSDMIFSVAELIEYL-SEFMT 204 (245)
T ss_pred CCcCCCHHHcCC--------------------ccccEEEEEE--------CCEEEEecCHHHhccCHHHHHHHH-hcCCC
Confidence 999999998854 2468888888 999999999999999999999998 89999
Q ss_pred cCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCCCCccCCCCCEEEEEEEEeCCCceeeeeeeeeEEee
Q 014670 344 LRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 417 (420)
Q Consensus 344 L~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~ 417 (420)
|+|||||+||||.|++ +|++||+|+++ ++ |+|+++|+|+.
T Consensus 205 L~pGDvIlTGTp~g~~--------------------------~l~~GD~v~~~--i~------glG~l~n~v~~ 244 (245)
T TIGR02303 205 LEPGDVILTGTPKGLS--------------------------DVKPGDVVRLE--IE------GVGALENPIVS 244 (245)
T ss_pred cCCCCEEEcCCCCCCe--------------------------EcCCCCEEEEE--Ec------CceeEEEEEEe
Confidence 9999999999999863 58999999998 66 99999999974
No 6
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Probab=100.00 E-value=2.1e-49 Score=362.03 Aligned_cols=199 Identities=26% Similarity=0.279 Sum_probs=171.4
Q ss_pred CcEecCCcccCCcceEee---cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcCCCCCCCC
Q 014670 116 KVEMLLPMEIGDYTDFFS---SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPP 192 (420)
Q Consensus 116 ~v~l~~P~~~~~~~~~~~---~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~ 192 (420)
++.++.|+..+.. ++|. |.+|++|.+.. .+++|++|.|+.||++++|++|..|.+
T Consensus 2 ~~~~~~~~~~~~K-IVcVg~NY~dh~~E~~~~-----------~PkeP~~FlKptss~v~~g~~i~~p~~---------- 59 (217)
T KOG1535|consen 2 DVMLLRPLKWPTK-IVCVGRNYADHCKELNNP-----------VPKEPFFFLKPTSSIVGPGGPIVIPPG---------- 59 (217)
T ss_pred ccchhhhhhcCCe-EEEecccHHHHHHHhCCC-----------CCCCCeEEeecchhhcCCCCceEcCCC----------
Confidence 4566778877753 3333 77899998752 347899999999999999999999986
Q ss_pred CCCCCCCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcC-CCCCccccccCCC--CCCcccc
Q 014670 193 PFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVT 269 (420)
Q Consensus 193 ~~~~s~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~-~lg~~~gKsfdt~--iGPwivt 269 (420)
++.+|||+|||+||||+ |+++++.+|++||+||+++.|+||||+|...+. +++|+.||+|||| +| -+++
T Consensus 60 ----~~~lh~EvEL~vVigK~---~~~v~~~~amd~v~Gy~valDmtARd~q~~ak~~g~pw~l~K~~Dtf~Pis-~~vp 131 (217)
T KOG1535|consen 60 ----SKGLHHEVELAVVIGKK---GSSVKKKDAMDYVGGYAVALDMTARDWQDEAKKKGLPWTLGKGFDTFTPIS-AIVP 131 (217)
T ss_pred ----cCccceeEEEEEEeccc---cccCChhhcccccccEEEEeeccchhhhhhhhhcCCCeeeccccCccCccc-cccc
Confidence 78899999999999999 999999999999999999999999999986543 6899999999997 99 5677
Q ss_pred ccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCE
Q 014670 270 LDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDL 349 (420)
Q Consensus 270 ~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S~~~tL~pGDv 349 (420)
.+.+.+ ++++.|.|+| ||+++|+++|++|+|+++.+|+|+ |+.|||+||||
T Consensus 132 k~~v~D--------------------p~nl~L~l~V--------nG~~~Q~g~T~~mifkip~li~~i-s~~~tL~~GDv 182 (217)
T KOG1535|consen 132 KEKVPD--------------------PHNLWLWLRV--------NGETRQTGNTSLMIFKIPDLISRL-SQIMTLEPGDV 182 (217)
T ss_pred HHHCCC--------------------ccceEEEEEE--------ccEEEecCchhhheecHHHHHHHH-hhheeecCCCE
Confidence 777765 5678889988 999999999999999999999997 99999999999
Q ss_pred EEcCCCCCCccCCCCceEEEEecC
Q 014670 350 LGTGTISGPEPESLGCLLELTWNG 373 (420)
Q Consensus 350 I~TGTp~Gvg~~~~G~~le~~~~G 373 (420)
|+||||.|||++.+||.+++++.+
T Consensus 183 ILTGTP~GVg~v~~Gd~i~~ei~~ 206 (217)
T KOG1535|consen 183 ILTGTPEGVGEVKPGDVIQCELLE 206 (217)
T ss_pred EEecCCCccccccCCCEEEecccc
Confidence 999999999876544444444433
No 7
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=1.6e-46 Score=388.33 Aligned_cols=192 Identities=20% Similarity=0.202 Sum_probs=164.3
Q ss_pred cHHHHHHhccccCC-CCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcC
Q 014670 134 SMHHAKNCGTIFRG-PANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGP 212 (420)
Q Consensus 134 ~~~H~~e~g~~~~~-~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIGk 212 (420)
|.+|+++++..+.. +.+. .++.|++|+|+++|++++|++|.+|.+ ..+|||+||++||||
T Consensus 12 y~~~~~~~~~~~~~~~~~~----~p~~P~~F~Kp~~al~g~~~~i~~P~~---------------~~~~~E~EL~vvIGk 72 (429)
T PRK15203 12 HRSQLDAWQEAFQQSPYKA----PPKTAVWFIKPRNTVIRCGEPIPFPQG---------------EKVLSGATVALIVGK 72 (429)
T ss_pred hHHHHHhhhhhccccccCC----CCCCCEEEecCcceeeCCCCcEECCCC---------------CCceEEEEEEEEECC
Confidence 78999987643211 1111 236799999999999999999999864 369999999999999
Q ss_pred CCCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCcc
Q 014670 213 GNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPY 290 (420)
Q Consensus 213 ~~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt~--iGPwivt~del~~~~~~~~~~~~~~~~~ 290 (420)
+ |++|++++|++||+|||++||+|+||+|.. .+|.++|+|||| +||||++.+
T Consensus 73 ~---~~~v~~~~A~~~V~Gyti~nD~t~rd~q~~----~~~~~~K~~D~~~p~Gp~i~~~~------------------- 126 (429)
T PRK15203 73 T---ATKVREEDAAEYIAGYALANDVSLPEESFY----RPAIKAKCRDGFCPIGETVALSN------------------- 126 (429)
T ss_pred c---cCCCCHHHHhhheeEEEEEEEeechhhccc----CCcccccCCCCCcccCCeEECCC-------------------
Confidence 9 999999999999999999999999999853 368999999997 999996421
Q ss_pred ccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceEEEE
Q 014670 291 LAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 370 (420)
Q Consensus 291 l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~ 370 (420)
+.++.|+++| ||+++|++||++|+|+++++|+|+ |++|||+|||||+||||+|++
T Consensus 127 -----~~~l~i~~~v--------NGe~~Q~~~t~~Mi~~~~~lis~l-S~~~tL~pGDvI~TGTP~g~~----------- 181 (429)
T PRK15203 127 -----VDNLTIYTEI--------NGRPADHWNTADLQRNAAQLLSAL-SEFATLNPGDAILLGTPQARV----------- 181 (429)
T ss_pred -----ccceEEEEEE--------CCEEEecCCHHHcCCCHHHHHHHH-hCCCCcCCCCEEEcCCCCCce-----------
Confidence 2458889988 999999999999999999999998 999999999999999999863
Q ss_pred ecCccccccCCCCCccCCCCCEEEEEEEEeCCCceeeeeeeeeEEeeC
Q 014670 371 WNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418 (420)
Q Consensus 371 ~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~ 418 (420)
+|++||+|+++ |+ |+|+|+|+|+.+
T Consensus 182 ---------------~l~~GD~v~~~--i~------gig~l~n~v~~~ 206 (429)
T PRK15203 182 ---------------EIQPGDRVRVL--AE------GFPPLENPVVDE 206 (429)
T ss_pred ---------------ECCCCCEEEEE--Ee------CeeEEEEEEEEc
Confidence 68888888888 66 888888888743
No 8
>PRK10691 hypothetical protein; Provisional
Probab=100.00 E-value=5.3e-45 Score=346.59 Aligned_cols=191 Identities=21% Similarity=0.264 Sum_probs=167.2
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCC
Q 014670 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 213 (420)
Q Consensus 134 ~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIGk~ 213 (420)
|.+|++|++.. .| +.|++|+|+++++++++++|.+|.. +.++|||+|||+||||+
T Consensus 26 y~~h~~e~~~~--------~p---~~P~~F~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvigk~ 80 (219)
T PRK10691 26 YAKHIKEMGSA--------TP---EEPVLFIKPETALCDLRQPLAIPKD--------------FGSVHHEVELAVLIGAT 80 (219)
T ss_pred HHHHHHHhCCC--------CC---CCCEEEECCcceeeCCCCcEECCCC--------------CCCeeEEEEEEEEECCC
Confidence 78999998642 22 5699999999999999999999975 67899999999999999
Q ss_pred CCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcC-CCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCcc
Q 014670 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPY 290 (420)
Q Consensus 214 ~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~-~lg~~~gKsfdt~--iGPwivt~del~~~~~~~~~~~~~~~~~ 290 (420)
++++++++|++||+|||++||||+||+|.+... .++|.++|+||++ +|||+++.+...+
T Consensus 81 ---~~~v~~~~a~~~V~gyt~~nDvt~r~~q~~~~~~~~~~~~~K~~D~~~~~gp~i~~~~~~~d--------------- 142 (219)
T PRK10691 81 ---LRQATEEHVRKAIAGYGVALDLTLRDLQGKMKKAGQPWEKAKAFDNSCPISGFIPVAEFTGD--------------- 142 (219)
T ss_pred ---CCCCCHHHHhhhheEEEEEEEeEhhhhhhhhccccCCccccccCCCCcCcCCcEEchhccCC---------------
Confidence 999999999999999999999999999987543 2468899999996 8999987544222
Q ss_pred ccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceEEEE
Q 014670 291 LAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 370 (420)
Q Consensus 291 l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~ 370 (420)
+..+.++++| ||+++|++++++|+|+++++|+|+ |+.+||+|||||+||||+|++
T Consensus 143 -----~~~l~i~l~v--------NG~~~q~g~~~~mi~~~~~lia~l-s~~~tL~aGDvI~TGTp~g~~----------- 197 (219)
T PRK10691 143 -----PQNTTLGLSV--------NGEVRQQGNTADMIHPIVPLIAYM-SRFFTLRAGDVVLTGTPEGVG----------- 197 (219)
T ss_pred -----ccccEEEEEE--------CCEEEEecCHHHhccCHHHHHHHH-hcCCccCCCCEEEcCCCCCCE-----------
Confidence 3457888888 999999999999999999999998 899999999999999998864
Q ss_pred ecCccccccCCCCCccCCCCCEEEEEEEEeCCCceeeeeeeeeEEe
Q 014670 371 WNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 416 (420)
Q Consensus 371 ~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~ 416 (420)
.|++||+|+++ ++ |+ +|+++|+
T Consensus 198 ---------------~l~~GD~v~~~--i~------gl-~~~~~~~ 219 (219)
T PRK10691 198 ---------------PLQSGDELTVT--FN------GH-SLTTRVL 219 (219)
T ss_pred ---------------ECCCCCEEEEE--Ee------CE-EEEEEeC
Confidence 58899999988 66 89 9999884
No 9
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=2.4e-44 Score=372.00 Aligned_cols=206 Identities=22% Similarity=0.279 Sum_probs=180.6
Q ss_pred ecCCcccCCcceEee---cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcCCCCCCCCCCC
Q 014670 119 MLLPMEIGDYTDFFS---SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 195 (420)
Q Consensus 119 l~~P~~~~~~~~~~~---~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~ 195 (420)
+++|+.++. .++|. |.+|++|++.. . ++.|++|+|+++++++++++|.+|..
T Consensus 215 ~~~p~~~~~-ki~~vg~Ny~~h~~e~~~~--------~---p~~P~~F~K~~~s~~g~~~~i~~P~~------------- 269 (429)
T PRK15203 215 FPTPPHPHG-TLFALGLNYADHASELEFK--------P---PEEPLVFLKAPNTLTGDNQTSVRPNN------------- 269 (429)
T ss_pred cccCCCCCC-eEEEEcCCHHHHHHHhCCC--------C---CCCCEEEEcCcceeeCCCCCEECCCC-------------
Confidence 666777664 24444 78999998632 1 25799999999999999999999975
Q ss_pred CCCCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCCC--CCCcccccccc
Q 014670 196 PSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDAL 273 (420)
Q Consensus 196 ~s~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt~--iGPwivt~del 273 (420)
+..+|||+|||+||||+ +++++++||++||+|||++||+|+||+|...+ ..|+++|+|||+ +|||++|.|++
T Consensus 270 -~~~ld~E~ELavVigk~---~~~v~~~ea~~~V~Gy~~~nD~t~rd~q~~~~--~~w~~~K~~d~~~plGp~~v~~d~~ 343 (429)
T PRK15203 270 -IEYMHYEAELVVVIGKQ---ARKVSEADAMDYVAGYTVCNDYAIRDYLENYY--RPNLRVKSRDGLTPILSTIVPKEAI 343 (429)
T ss_pred -CCceEEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEEeccchhhhhhhc--CCceEeccCCCCcCCCCCEeChhhc
Confidence 67899999999999999 99999999999999999999999999996643 458999999996 99999999877
Q ss_pred CCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcC
Q 014670 274 EPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTG 353 (420)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TG 353 (420)
.+ +.++.++++| ||+++|++++++|+|+++++|+|+ |+.++|+|||+|+||
T Consensus 344 ~d--------------------~~~l~i~l~v--------NG~~vq~g~t~~m~~~v~~li~~l-s~~~tL~aGDvI~TG 394 (429)
T PRK15203 344 PD--------------------PHNLTLRTFV--------NGELRQQGTTADLIFSVPFLIAYL-SEFMTLNPGDMIATG 394 (429)
T ss_pred CC--------------------ccceEEEEEE--------CCEEEEeeCHHHhccCHHHHHHHH-hcCCCcCCCCEEEeC
Confidence 54 3568888888 999999999999999999999998 899999999999999
Q ss_pred CCCCCccCCCCceEEEEecCccccccCCCCCccCCCCCEEEEEEEEeCCCceeeeeeeeeEEeeC
Q 014670 354 TISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418 (420)
Q Consensus 354 Tp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~ 418 (420)
||.|++ +|++||+|+++ ++ |+|+++|+|+.+
T Consensus 395 Tp~g~~--------------------------~l~pGD~v~~~--i~------glG~l~n~v~~~ 425 (429)
T PRK15203 395 TPKGLS--------------------------DVVPGDEVVVE--VE------GVGRLVNRIVSE 425 (429)
T ss_pred CCCCCe--------------------------ECCCCCEEEEE--Ec------CceEEEEEEEec
Confidence 999863 58999999998 67 999999999754
No 10
>PRK12764 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-42 Score=364.11 Aligned_cols=195 Identities=23% Similarity=0.309 Sum_probs=170.4
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCC
Q 014670 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 213 (420)
Q Consensus 134 ~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIGk~ 213 (420)
|..|++|++.. ++.|++|+|++++++++|++|.+|.+ +..+|||+|||+||||+
T Consensus 31 y~~ha~e~~~~------------p~~P~~f~K~~~sl~~~g~~I~~p~~--------------~~~l~~E~ELavVIgr~ 84 (500)
T PRK12764 31 YPSRAAQRGRT------------PAQPSYFLKPSSSLALSGGTVERPAG--------------TELLAFEGEIALVIGRP 84 (500)
T ss_pred CHHHHHHhCCC------------CCCCEEEEeccceEeCCCCeEECCCC--------------CCceeEEEEEEEEECCc
Confidence 78899987531 25699999999999999999999875 57899999999999999
Q ss_pred CCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccc
Q 014670 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYL 291 (420)
Q Consensus 214 ~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt~--iGPwivt~del~~~~~~~~~~~~~~~~~l 291 (420)
+++++++||++||+|||++||+|+||+|..++ ..|+++|+||++ +|||+++.+++++
T Consensus 85 ---~~~v~~eea~~~I~Gyt~~nDvt~rD~~~~d~--~~~~~~K~~Dg~~plGp~iv~~~~~d~---------------- 143 (500)
T PRK12764 85 ---ARRVSPEDAWSHVAAVTAANDLGVYDLRYADK--GSNLRSKGGDGFTPIGPALISARGVDP---------------- 143 (500)
T ss_pred ---CCCCCHHHHHhhheEEEEecceeeehhhhhhc--CCcccccccCccEecCCCccCccccCc----------------
Confidence 89999999999999999999999999997654 247899999997 9999999988743
Q ss_pred cccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceEEEEe
Q 014670 292 AEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTW 371 (420)
Q Consensus 292 ~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~ 371 (420)
.++.|+++| ||+++|+++|++|+|++++||+|+ |+++||+|||||+||||.|++
T Consensus 144 -----~~l~i~~~v--------NGe~~Q~g~t~dmi~~v~~LI~~l-S~~~tL~pGDvIlTGTp~g~~------------ 197 (500)
T PRK12764 144 -----AQLRVRTWV--------NGELVQDDTTEDLLFPFAQLVADL-SQLLTLEEGDVILTGTPAGSS------------ 197 (500)
T ss_pred -----cceEEEEEE--------CCEEEEeccHHHhcCCHHHHHHHH-hcCCCcCCCCEEEeCCCCCCe------------
Confidence 568888888 999999999999999999999998 899999999999999999863
Q ss_pred cCccccccCCCCCccCCCCCEEEEEEEEeC--CCceeeeeeeeeEEeeC
Q 014670 372 NGQKPLSLDGFTRKFLEDGDEVTFTGFCKG--NGYTVGFGTCSGKIVPS 418 (420)
Q Consensus 372 ~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~--~~~~~g~G~~~~~v~~~ 418 (420)
+|++||+|+++ +++ +|..+ ||+|+|+|+..
T Consensus 198 --------------~l~pGD~v~~~--i~gi~~~~~~-~G~L~n~v~~~ 229 (500)
T PRK12764 198 --------------VAAPGDVVEVE--VDAPADGAPS-TGRLVTRVVEG 229 (500)
T ss_pred --------------ecCCCCEEEEE--EcCCccCCCC-cceEEEEEEeC
Confidence 68899999988 661 22222 49999999764
No 11
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=100.00 E-value=1.8e-41 Score=321.50 Aligned_cols=209 Identities=31% Similarity=0.388 Sum_probs=175.3
Q ss_pred EeecHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEE
Q 014670 131 FFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVV 210 (420)
Q Consensus 131 ~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVI 210 (420)
..+|.+|+++++... ...+ .-.+...|++|.|++++++++|++|.+|.. +..+|||+|||++|
T Consensus 6 ~~n~~~~~~~~~~~~--~~~p-~~~~~~~p~~~~~~~~~~~~~g~~i~~p~~--------------~~~~~~E~Ela~vi 68 (218)
T PF01557_consen 6 GLNYTSHAEEAGAGD--VDEP-DYGVPVEPVFFMKPPSSLVGSGAPIPLPRG--------------SRRLDYEAELAFVI 68 (218)
T ss_dssp ESEBHHHHHHTTTTC--SSTT-SEECECSGEEEEEEGGGEEETTSEEEECTT--------------SSSEEEEEEEEEEE
T ss_pred eEchHHHHHHhCcCC--CCCC-ccccccCCeEEecCCceeecCCCceecCcc--------------ccccCcceEEEEEE
Confidence 445889999987541 1111 001235788999999999999999999975 67899999999999
Q ss_pred cCCCCCCCCC-ChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCC
Q 014670 211 GPGNELGKPI-DVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQP 287 (420)
Q Consensus 211 Gk~~~~g~~i-s~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt~--iGPwivt~del~~~~~~~~~~~~~~ 287 (420)
||+ ++++ ++++|++||+||+++||||+|++|.+.+.+++|+.+|+|+++ +|||+++.+++.++
T Consensus 69 g~~---~~~~~~~~ea~~~i~g~~~~~d~~~r~~~~~~~~~~~~~~~k~~~~~~~~Gp~~v~~~~~~~~----------- 134 (218)
T PF01557_consen 69 GRP---LRNVYTPEEALDAIAGYTPANDVTARDLQWRERPGLPWIADKSFDGSLVLGPWVVPPDELPDL----------- 134 (218)
T ss_dssp SS----BSSTH-HHHHGGGEEEEEEEEEEEEHHHHHHHHHTHSSHHHHSSTTCEEEEEEEEEHSSHSGT-----------
T ss_pred ecC---CCCCCCHHHHHHHhhEEeeecccchhhhhhhhhcccchhhccCcCcceeecccccccccccCc-----------
Confidence 998 8888 999999999999999999999999887755688999999996 99999999998752
Q ss_pred CccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceE
Q 014670 288 LPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLL 367 (420)
Q Consensus 288 ~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~l 367 (420)
.++++++++ ||+++|++++++|+|++.++|+|+ |++++|+|||+|+||||+|++.
T Consensus 135 ---------~~~~~~l~v--------nG~~~~~~~~~~~~~~~~~ll~~l-s~~~~L~aGdvI~TGt~~G~~~------- 189 (218)
T PF01557_consen 135 ---------RDLRLRLRV--------NGEVVQSGSTSDMLGDPAELLAWL-SRGLTLRAGDVILTGTPTGVGA------- 189 (218)
T ss_dssp ---------TSEEEEEEE--------TTEEEEEEEGGGBSSSHHHHHHHH-HTTS-B-TTEEEEEEESSTSEG-------
T ss_pred ---------ceEEEEEEE--------CCEEEEeccchhHHhhHHHHHHHH-hCCCCCCcceEEEcCCcCCCCc-------
Confidence 458888888 999999999999999999999996 9999999999999999999742
Q ss_pred EEEecCccccccCCCCCccCCCCCEEEEEEEE-eCCCceeeeeeeeeEEe
Q 014670 368 ELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFC-KGNGYTVGFGTCSGKIV 416 (420)
Q Consensus 368 e~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~-~~~~~~~g~G~~~~~v~ 416 (420)
.. ++.+|++||+|+++ + + |||+++|+|+
T Consensus 190 ------~~-------~~~~l~~Gd~v~~~--~~~------glG~l~~~v~ 218 (218)
T PF01557_consen 190 ------RP-------PPVPLQPGDRVEAE--IDE------GLGSLENTVA 218 (218)
T ss_dssp ------SS-------CCEEEBTT-EEEEE--EET------TTEEEEEEEE
T ss_pred ------cc-------ccccCCCCcEEEEE--EEC------CEeEEEEEEC
Confidence 01 56899999999998 6 6 9999999985
No 12
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=1.9e-40 Score=312.46 Aligned_cols=194 Identities=21% Similarity=0.215 Sum_probs=166.1
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCC
Q 014670 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 213 (420)
Q Consensus 134 ~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIGk~ 213 (420)
|.+|++|++..+...... ..++.|++|+|++++++++|++|.+|.. +..++||+|||+||||+
T Consensus 10 y~~h~~~~~~~~~~~~~~---~~p~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~~~~~E~ELa~vigr~ 72 (205)
T TIGR02305 10 YREQLDRLQEAFQQAPYK---APPKTPVLYIKPRNTHNGCGQPIPLPAG--------------VEKLRSGATLALVVGRT 72 (205)
T ss_pred HHHHHHHhcccccccccC---CCCCCCEEEEcCcceEeCCCCeEECCCC--------------CCCccEEEEEEEEECCC
Confidence 789999997532211111 1236799999999999999999999864 56899999999999999
Q ss_pred CCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccc
Q 014670 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYL 291 (420)
Q Consensus 214 ~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt~--iGPwivt~del~~~~~~~~~~~~~~~~~l 291 (420)
++++++++|++||+||+++||+|+|+.|... .|.++|+||++ +||| ++.+++.+
T Consensus 73 ---~~~~~~~~a~~~v~g~~~~~dit~~~~~~~~----~~~~~k~~dg~~~lGp~-v~~~~~~d---------------- 128 (205)
T TIGR02305 73 ---ACRVREEEALDYVAGYALVNDVSLPEDSYYR----PAIKAKCRDGFCPIGPE-VPLSAIGN---------------- 128 (205)
T ss_pred ---CCCCCHHHHHHhhheeEEeeeeehhhhhccC----cchhhcccCCccccCCc-ccHHHcCC----------------
Confidence 8899999999999999999999999987532 47899999996 9999 77777644
Q ss_pred cccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceEEEEe
Q 014670 292 AEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTW 371 (420)
Q Consensus 292 ~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~ 371 (420)
+..+.++++| ||+++|++++++|+|++.++|+|+ |++++|+|||||+||||.|+
T Consensus 129 ----~~~~~~~l~v--------ng~~~~~g~~~~~~~~~~~li~~l-s~~~~L~aGdvI~TGT~~g~------------- 182 (205)
T TIGR02305 129 ----PDELTIYTYI--------NGKPAQSNNTSNLVRSAAQLISEL-SEFMTLNPGDVLLLGTPEAR------------- 182 (205)
T ss_pred ----ccccEEEEEE--------CCEEEEeeCHHHhCcCHHHHHHHH-hCCCCcCCCCEEEeCCCCCC-------------
Confidence 3457888888 999999999999999999999998 89999999999999999885
Q ss_pred cCccccccCCCCCccCCCCCEEEEEEEEeCCCceeeeeeeeeEE
Q 014670 372 NGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI 415 (420)
Q Consensus 372 ~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v 415 (420)
.+|++||+|+++ ++ |+|+++|+|
T Consensus 183 -------------~~l~~Gd~v~~~--i~------glG~l~n~v 205 (205)
T TIGR02305 183 -------------VEVGPGDRVRVE--AE------GLGELENPV 205 (205)
T ss_pred -------------eecCCCCEEEEE--Ec------CceeEEEeC
Confidence 378999999998 66 999999986
No 13
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=99.88 E-value=7.6e-22 Score=191.95 Aligned_cols=169 Identities=16% Similarity=0.078 Sum_probs=118.9
Q ss_pred ceeeecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhhHh---hceeEEEEee
Q 014670 160 PIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA---DHIFGVMLMN 236 (420)
Q Consensus 160 P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIGk~~~~g~~is~e~A~---~~I~Gyti~N 236 (420)
|++=.-..+.+..+|.+|.++.. ..+++|+|||+||||+++ +++++++|++ ++|+++.-+|
T Consensus 73 P~~g~l~~~~~~~~g~~i~~~~~---------------~~~~vE~Elafvlg~~l~-~~~~t~~ev~~ai~~v~~~~El~ 136 (255)
T TIGR03220 73 PDFGYLLDGMVYNEGEPIPTDTL---------------IQPKAEGEIAFVLKKDLM-GPGVTAADVLAATECVMPCFEIV 136 (255)
T ss_pred CcEEEeeccccccCCCeeccccC---------------ccceeeeEEEEEECCCCC-CCCCCHHHHHHHHhheeeeEEEc
Confidence 44333345666667888876642 379999999999999965 5789999655 7888888889
Q ss_pred ccchhhhhhhhcCCCCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCe
Q 014670 237 DWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSC 316 (420)
Q Consensus 237 D~SaRd~Q~~~~~~lg~~~gKsfdt~iGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe 316 (420)
|.+.||+|.. ..+..+|+. +-|. +|+.+++.+... .+...+.+++++ ||+
T Consensus 137 D~r~~~~~~~----~~~~~Ad~~--~~~~-~V~g~~~~~~~~---------------~~l~~~~~~l~v--------nG~ 186 (255)
T TIGR03220 137 DSRIRDWKIK----IQDTVADNA--SCGV-FVLGDTRVDPRK---------------LDLALCGMVLEK--------NGE 186 (255)
T ss_pred ccccccCCCC----ccceeeecC--Ccce-EEECCCcCCccc---------------cChhhCceEEEE--------CCE
Confidence 9999999752 246667763 2222 333333322110 012334556777 999
Q ss_pred EEEecchhhhccCHHHHHHHHHhc-----CcccCCCCEEEcCCCCCCccCCCCceEEEEecCcc
Q 014670 317 VVTRSNFKYLYWTLTQQLAHHTIN-----GCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQK 375 (420)
Q Consensus 317 ~~q~~~t~~m~~~~~~lIa~~~S~-----~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~ 375 (420)
++|++++++|++++.++|+|+ ++ +++|+|||+|+||||.|+.++++||.++++++|.+
T Consensus 187 ~~~~g~~~~~lg~p~~~l~~L-~~~l~~~g~~L~aGdiV~TGt~~g~~~v~~Gd~v~~~~~glG 249 (255)
T TIGR03220 187 IVSTGAGAAALGSPVNAVAWL-ANTLGRLGIPLKAGEVILSGSLAALVPVKAGDNLRVSIGGIG 249 (255)
T ss_pred EEeecchhhccCCHHHHHHHH-HHHHHHcCCCCCCCCEEECCCCCCCeeCCCCCEEEEEEcCCc
Confidence 999999999999999999998 66 88999999999999999764444444444444433
No 14
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=99.82 E-value=8.8e-20 Score=178.17 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=121.0
Q ss_pred CCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCC--C-CCCccccccccC
Q 014670 198 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT--T-LSPWIVTLDALE 274 (420)
Q Consensus 198 ~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt--~-iGPwivt~del~ 274 (420)
....+|+|||+++||+++ +..++.+|+.++|.++..+.++-.+.++.|.. ......+.+... . +|+.+...++++
T Consensus 100 ~~~~iE~Eiaf~l~~dl~-~~~~t~~ev~~ai~~v~paiEivdsr~~~~~~-~~~~~iAD~~~~~~~VlG~~~~~~~~~d 177 (262)
T PRK11342 100 LQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDWSI-QFVDTVADNASCGVYVIGGPAQRPAGLD 177 (262)
T ss_pred CCcceeeEEEEEECCCCC-CCCCCHHHHHHhhceEeeeEEecCCcccCCCC-chhheeecccccceEEECCCcCCcccCC
Confidence 356789999999999865 46789999999999999999999998887642 111222333222 1 777665544432
Q ss_pred CccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHH----hcCcccCCCCEE
Q 014670 275 PFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHT----INGCNLRSGDLL 350 (420)
Q Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~----S~~~tL~pGDvI 350 (420)
..++.+++++ ||+++|++++++|+|++.++|+|++ +++++|+|||||
T Consensus 178 ---------------------~~~~~~~l~v--------ng~~~q~g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdvV 228 (262)
T PRK11342 178 ---------------------LKNCAMKMTR--------NNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRAGDII 228 (262)
T ss_pred ---------------------hhhCEEEEEE--------CCEEEEEEcHHHhccCHHHHHHHHHHHHHHcCCCcCCCCEE
Confidence 2457788887 9999999999999999999999862 344699999999
Q ss_pred EcCCCCCCccCCCCceEEEEecCccccccCCCCCccCCCCCEEEEEEEEeCCCceeeeeeeeeEEee
Q 014670 351 GTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 417 (420)
Q Consensus 351 ~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~ 417 (420)
+||||.|+ .++++||+|+++ ++ |+|++++++.-
T Consensus 229 ~TGt~~~~--------------------------~~l~~Gd~v~~~--i~------glG~v~~~~~~ 261 (262)
T PRK11342 229 LTGALGPM--------------------------VAVNAGDRFEAH--IE------GIGSVAATFSS 261 (262)
T ss_pred EcCCCCCC--------------------------eeCCCCCEEEEE--EC------CCceEEEEEec
Confidence 99999774 488999999888 66 89999998754
No 15
>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the N-terminal domain of fumarylacetoacetase.; GO: 0004334 fumarylacetoacetase activity, 0009072 aromatic amino acid family metabolic process; PDB: 1QCN_B 1QCO_B 2HZY_A 1QQJ_B 1HYO_A.
Probab=99.75 E-value=1.7e-18 Score=147.19 Aligned_cols=105 Identities=50% Similarity=0.870 Sum_probs=81.3
Q ss_pred CCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCC--ccCCCccCcccHHHHHhCCchhHHHHHHHHHHHHhc
Q 014670 18 QNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI--LKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSS 95 (420)
Q Consensus 18 ~n~p~~~f~~~~~~~~r~Gv~~gd~viDL~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~g~~~~~~~r~~l~~~~~~ 95 (420)
+|||||+||+..++.+|+||++||+|+||+++...++++++. .....+|.+++||+|+++|++.|.++|+.|+++++.
T Consensus 1 qNLPfGVFst~~~~~pR~gvaIGd~VlDL~al~~~g~~~~~~~~~~~~~~f~~~tLN~fmalg~~~w~avR~~L~~lL~~ 80 (107)
T PF09298_consen 1 QNLPFGVFSTPDDPSPRVGVAIGDQVLDLSALAAAGLFDGPSLSPAAASAFAQPTLNDFMALGRPAWRAVRARLQELLSA 80 (107)
T ss_dssp TT--EEEEEESSEESEEEEEEETTEEEEHHHH--GGG--STTTTTG-GGGGGSSSSHHHHHC-HHHHHHHHHHHHHHHBT
T ss_pred CCCCcEEEecCCCCCCeeEEEECCEEEehHHHhhhcccCcccchhhhHhHhcCCCHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 699999999888889999999999999999997777665422 345788999999999999999999999999999985
Q ss_pred cchhhhhhhhhcccccccCCCcEecCC
Q 014670 96 NEATLRDNANLRQKSLVPMGKVEMLLP 122 (420)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~v~l~~P 122 (420)
..+...++....+..++|+++|+||+|
T Consensus 81 ~~~~~~~~~~~~~~~L~~~~~v~mhLP 107 (107)
T PF09298_consen 81 DNSELSDNQALVEPALVPQAEVTMHLP 107 (107)
T ss_dssp TSCHHHT-HHHHHHHEEEGGGEEEE-S
T ss_pred cCccccchHHHHHHhcccHHHhhcCCC
Confidence 544444445556778999999999998
No 16
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=99.64 E-value=2.1e-15 Score=147.79 Aligned_cols=170 Identities=18% Similarity=0.097 Sum_probs=121.5
Q ss_pred CceeeecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeecc
Q 014670 159 LPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 238 (420)
Q Consensus 159 ~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~ 238 (420)
.|++=.-..+.+..+|..+.... -.+.-+|+|||+++|++++ +...+.+|++++|.+|..+.|+
T Consensus 77 ~P~~g~l~~~~~~~~g~~~~~~~---------------~~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEi 140 (267)
T TIGR02312 77 EPDYGVLLDDMFFEDGSTIPADR---------------FIQPRVEVELAFVLKKDLE-GPNVTIFDVLNATDYVVPALEI 140 (267)
T ss_pred CCeeEEecCccccCCCCeecccc---------------ccccccceEEEEEECCCCC-CCCCCHHHHHHHhheEEeeEEE
Confidence 35443444556666666554321 2356799999999999865 5789999999999999999999
Q ss_pred chhhhhhhhcCCCCCccccccCC---------C-CCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEe
Q 014670 239 SARDIQAWEYVPLGPFLGKSFGT---------T-LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIK 308 (420)
Q Consensus 239 SaRd~Q~~~~~~lg~~~gKsfdt---------~-iGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~ 308 (420)
..+.++.|.... ++ .-|.+++ . +||.++.++.++ ...+.++|++
T Consensus 141 ~dsr~~~~~~~~-~~-~~~~~d~iADn~~~~~~v~G~~~~~~~~~d---------------------l~~~~~~l~~--- 194 (267)
T TIGR02312 141 IDARIERVDPET-GA-TRKVFDTISDNAANAGIVLGGRPVRPDALD---------------------LRWVGAILYR--- 194 (267)
T ss_pred eecccccccccc-CC-ccccccEecCCccceEEEECCCCCCccccC---------------------hhhcccEEEE---
Confidence 999998775321 11 0022322 1 777665544432 2345667776
Q ss_pred eCCCCCCeEEEecchhhhccCHHHHHHHHH----hcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCcc
Q 014670 309 PAGKEDSCVVTRSNFKYLYWTLTQQLAHHT----INGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQK 375 (420)
Q Consensus 309 ~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~----S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~ 375 (420)
||++++++++++|..++.+.++|++ .++.+|++||||+|||+.|+.++++|+.++++++|.+
T Consensus 195 -----nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~G~~~~~~~~glG 260 (267)
T TIGR02312 195 -----NGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARSGDTFHADYGPLG 260 (267)
T ss_pred -----CCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCCCCEEEEEEcCCc
Confidence 9999999999999999999999873 4556999999999999999866655555555555544
No 17
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=99.60 E-value=1.1e-14 Score=141.19 Aligned_cols=185 Identities=22% Similarity=0.176 Sum_probs=136.4
Q ss_pred ceeeec-CCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeecc
Q 014670 160 PIAYHG-RASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 238 (420)
Q Consensus 160 P~~f~k-~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~ 238 (420)
|.+|+| .+.+-+|+|+.|-.-.. |.+-..|.|+++++... |+ |.|||++||+
T Consensus 169 aEIFtKaqpmssVG~Ga~Igv~~~--------------S~WnnPEPEvvl~~dS~---G~----------I~GaTlgnDV 221 (379)
T COG3970 169 AEIFTKAQPMSSVGHGAQIGVRPD--------------SEWNNPEPEVVLAVDSS---GK----------IVGATLGNDV 221 (379)
T ss_pred hhheecCCccccccccceeeeccc--------------cccCCCCCeEEEEEcCC---Cc----------EEeeeecCcc
Confidence 556777 66788899999954322 78999999999999877 87 9999999999
Q ss_pred chhhhhhhhcCCCCCccccccCCC--CCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCC-
Q 014670 239 SARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDS- 315 (420)
Q Consensus 239 SaRd~Q~~~~~~lg~~~gKsfdt~--iGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NG- 315 (420)
++||+..+. +|-..++|....+ +||+|++.||.-... +...-.|+|+| .++ +|
T Consensus 222 nlRD~Egrs--aLlL~kaKdnnasCaiGPfIrlfDe~f~~~-----------------dv~~a~vtLkv--~ge---dgf 277 (379)
T COG3970 222 NLRDFEGRS--ALLLSKAKDNNASCAIGPFIRLFDETFTID-----------------DVKSAEVTLKV--TGE---DGF 277 (379)
T ss_pred ccccccccc--chhcccccccCccccccceEEeecCCCChh-----------------hhhhceEEEEE--Ecc---Cce
Confidence 999998764 3444567776664 999999988753211 01223477776 233 33
Q ss_pred eEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCCCCccCCCCCEEEE
Q 014670 316 CVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTF 395 (420)
Q Consensus 316 e~~q~~~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~ 395 (420)
..-..+|++.|-.++.+++..+.-+.....-|-++++||---++.-+.+ + +....-+.||.|||
T Consensus 278 ~l~G~snm~~isR~p~~l~~Q~l~~~hqyPDG~~lflGTmfaP~kDr~~---------~-------g~gfth~~gD~VeI 341 (379)
T COG3970 278 FLEGSSNMAEISRSPEELVIQALNRDHQYPDGFALFLGTMFAPGKDRGL---------K-------GLGFTHEVGDIVEI 341 (379)
T ss_pred EEeccccHHhhccCHHHHHHHHhccCCCCCCceeEEeeeeeccccccCC---------C-------CCCcccCCCCEEEE
Confidence 3456678999999888887766678889999999999997554432100 0 13466799999999
Q ss_pred EEEEeCCCceeeeeeeeeEEeeCC
Q 014670 396 TGFCKGNGYTVGFGTCSGKIVPST 419 (420)
Q Consensus 396 ~~~~~~~~~~~g~G~~~~~v~~~~ 419 (420)
+ .+ -||+|.|+|....
T Consensus 342 S--tp------~lG~Lin~V~~~d 357 (379)
T COG3970 342 S--TP------KLGTLINPVTTSD 357 (379)
T ss_pred e--cc------ccceeeeeeeccC
Confidence 8 66 7999999997653
No 18
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=99.26 E-value=1.2e-10 Score=114.09 Aligned_cols=147 Identities=13% Similarity=0.151 Sum_probs=107.1
Q ss_pred CceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCCC---CCCccccccccCC
Q 014670 199 KLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT---LSPWIVTLDALEP 275 (420)
Q Consensus 199 ~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt~---iGPwivt~del~~ 275 (420)
..-.|+|+|+++|++++ +.+.+.+++.++|..+..+..+-..-+..|.. .+....+.+..+. +||+....+.++
T Consensus 105 ~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEivdsR~~~~~~-~~~~~iADn~~~~~~vlG~~~~~~~~~d- 181 (263)
T TIGR03218 105 HPKVEAEIAFVTKAPLK-GPGCHIGDVLAATDFVMPAVEVIDSRYRDFKF-DLKSVIADNTSSARFVTGGRAANVEDLD- 181 (263)
T ss_pred cceeeeEEEEEECCCCC-CCCCCHHHHHHhhcEEEeeEEeccCcccCCCC-ChhheeeeccccceEEECCCCCCccccC-
Confidence 46799999999999875 67899999999999999999887777765531 1222344444332 788776544332
Q ss_pred ccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHH----HhcCcccCCCCEEE
Q 014670 276 FACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHH----TINGCNLRSGDLLG 351 (420)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~----~S~~~tL~pGDvI~ 351 (420)
...+.+++++ ||++++.+..++..-++...++|+ ..++..|++||+|+
T Consensus 182 --------------------l~~~~~~l~~--------~g~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV~ 233 (263)
T TIGR03218 182 --------------------LRTLGVVMEK--------NGEVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFIM 233 (263)
T ss_pred --------------------HhhCcEEEEE--------CCEEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence 2445667776 999999999888877777777765 47788999999999
Q ss_pred cCCCCCCccCCCCceEEEEecCccc
Q 014670 352 TGTISGPEPESLGCLLELTWNGQKP 376 (420)
Q Consensus 352 TGTp~Gvg~~~~G~~le~~~~G~~~ 376 (420)
|||..|+-++.+|+.+.++++|.+.
T Consensus 234 tGs~t~~~~v~~G~~~~~~~~glG~ 258 (263)
T TIGR03218 234 SGGITEAVAVAPGDSVTVRYQGLGS 258 (263)
T ss_pred CCcCcCceecCCCCEEEEEECCCce
Confidence 9999887655555555555555543
No 19
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.96 E-value=2.6e-09 Score=102.61 Aligned_cols=148 Identities=18% Similarity=0.214 Sum_probs=111.8
Q ss_pred ceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchhhhh-hhhcCCCCCccccccCC--C-CCCccccccccCC
Q 014670 200 LDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ-AWEYVPLGPFLGKSFGT--T-LSPWIVTLDALEP 275 (420)
Q Consensus 200 lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q-~~~~~~lg~~~gKsfdt--~-iGPwivt~del~~ 275 (420)
.-+|+||+++++|+++ +-++|..|+++||.-+..+..+----++ .|.. ++..+.+.+... + |||-.+.+++++-
T Consensus 103 prvE~EiafvL~kdlp-a~~~T~~d~l~a~~~v~palElidsri~~d~~~-~~~dtiaDnaan~G~ViG~~~~~~~~ld~ 180 (264)
T COG3971 103 PRVEVEIAFVLKKDLP-APDCTVADVLNATDYVLPALELIDSRIKQDWQV-KFPDTIADNAANAGFVIGGRAVKPDDLDL 180 (264)
T ss_pred eeeeeeEEEEecCCCC-CCCCCHHHHHHHHHhhhhhhhhccchhhhCCCC-CcceEEecccccCceEECCCCCCchhhhh
Confidence 4899999999999987 7899999999999988888877544444 3321 222334444333 3 9987766666542
Q ss_pred ccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHH----hcCcccCCCCEEE
Q 014670 276 FACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHT----INGCNLRSGDLLG 351 (420)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~----S~~~tL~pGDvI~ 351 (420)
..+...+.. ||++++.+..+-.+-++..-++|++ +.+.+|+.||||+
T Consensus 181 ---------------------~~~~~~l~r--------ng~~~e~g~~aavLghP~~a~~wLAn~~a~~G~~Lk~G~IVl 231 (264)
T COG3971 181 ---------------------RNVGATLYR--------NGVEEETGVGAAVLGHPAAALAWLANKLAAYGVPLKAGDIVL 231 (264)
T ss_pred ---------------------hhccceeee--------cCEEEEeeechhhcCCcHHHHHHHHHHHHHcCCCcccCcEEe
Confidence 234445554 9999999999999999999898865 6788999999999
Q ss_pred cCCCCCCccCCCCceEEEEecCccccc
Q 014670 352 TGTISGPEPESLGCLLELTWNGQKPLS 378 (420)
Q Consensus 352 TGTp~Gvg~~~~G~~le~~~~G~~~~~ 378 (420)
||.-.+.-+..+||.+++.++|.+.++
T Consensus 232 ~Gs~t~~v~~~~gd~~h~~~~~lG~v~ 258 (264)
T COG3971 232 TGSFTGPVPARPGDTFHADFGGLGAVS 258 (264)
T ss_pred cCccCccccCCCCCEEEEEecCcCceE
Confidence 999988877777777777777776543
No 20
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.47 E-value=2.4e-06 Score=81.88 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=92.6
Q ss_pred cee-eecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEE--EEEcCCCCCCCCCChhhHhhceeEEEEee
Q 014670 160 PIA-YHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMA--AVVGPGNELGKPIDVNEAADHIFGVMLMN 236 (420)
Q Consensus 160 P~~-f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELa--vVIGk~~~~g~~is~e~A~~~I~Gyti~N 236 (420)
|.. |.+.-+.++.+|.++..|.- ...=--|.||+ .+||.+ |. -|-.||+++|
T Consensus 141 PEWFyKG~G~~~vapGa~l~sPaF--------------AedggEEpEiaGiYlig~d---g~--------p~RlGfal~N 195 (333)
T COG3802 141 PEWFYKGDGTVAVAPGAPLPSPAF--------------AEDGGEEPEIAGIYLIGDD---GT--------PYRLGFALAN 195 (333)
T ss_pred cceEEeCCCcEEecCCCCCCChhh--------------hhccCCCceeeEEEEECCC---Cc--------eeEEeeeecc
Confidence 444 45577888899999887753 33344688887 678877 75 4668999999
Q ss_pred ccchhhhhhhhcCCCCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCe
Q 014670 237 DWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSC 316 (420)
Q Consensus 237 D~SaRd~Q~~~~~~lg~~~gKsfdt~iGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe 316 (420)
.+|.-=..+..| |....+|=-..++||-|..-+ ++. .++=.-++. ++|+
T Consensus 196 EfSDHvtEr~NY--L~LAHSKLR~as~GPEl~vG~-lP~----------------------~vrG~SRI~------Rdg~ 244 (333)
T COG3802 196 EFSDHVTERVNY--LYLAHSKLRNASFGPELLVGA-LPE----------------------DVRGVSRIL------RDGE 244 (333)
T ss_pred hhhhhhhhccce--EEeehhhhhccccCcceeecc-Cch----------------------hhcCceeee------cCCE
Confidence 999876665444 334578877778999886543 221 111122221 3777
Q ss_pred EEEec----chhhhccCHHHHHHHHHhcCcccCCCCE----EEcCCC
Q 014670 317 VVTRS----NFKYLYWTLTQQLAHHTINGCNLRSGDL----LGTGTI 355 (420)
Q Consensus 317 ~~q~~----~t~~m~~~~~~lIa~~~S~~~tL~pGDv----I~TGTp 355 (420)
++-+- --.+|-.+++.|=-|+.--.+-.+|||| ..|+|-
T Consensus 245 viwek~FlSGE~nMsHs~aNLEhhHFkY~lfrrpGDvHvh~FGtatl 291 (333)
T COG3802 245 VIWEKPFLSGEANMSHSIANLEHHHFKYALFRRPGDVHVHFFGTATL 291 (333)
T ss_pred EEEecccccCccchhhhhhhhhhhhhhhhhhcCCCceEEEEeccEEE
Confidence 74432 2468999999987777555677899997 345554
No 21
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=97.86 E-value=0.00027 Score=65.85 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=119.1
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCC
Q 014670 135 MHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGN 214 (420)
Q Consensus 135 ~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIGk~~ 214 (420)
..|+.|+... |. | +| ...|.+|--.++-+.-. ..|... ...---|+|-++|..+
T Consensus 12 ~~HI~EL~~l--GV--p-~P--s~vP~~Y~v~~~lltq~-~~i~v~----------------g~~tSGE~E~vli~~~-- 65 (194)
T PF11010_consen 12 EHHIEELAAL--GV--P-PP--SSVPLFYRVAPYLLTQA-DEIEVL----------------GEDTSGEAEPVLIRHG-- 65 (194)
T ss_pred HHHHHHHHHh--CC--C-CC--CCCCEEEEechhhCccc-CeEEec----------------cCCCCceEEEEEEEEC--
Confidence 4699888653 22 1 22 26799888877666533 333322 1234458898877764
Q ss_pred CCCCCCChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCC-CCCCccccccccCCccCCCCCCCCCCCccccc
Q 014670 215 ELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT-TLSPWIVTLDALEPFACDSPKQDPQPLPYLAE 293 (420)
Q Consensus 215 ~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt-~iGPwivt~del~~~~~~~~~~~~~~~~~l~~ 293 (420)
|+ + =.+++-|=|.|++.... -..+|.... ++++-+-..+++.+.+
T Consensus 66 --g~----------~-~v~vgSDHTDR~lE~~s-----Va~SKq~c~Kpva~~~W~~~dV~dhW---------------- 111 (194)
T PF11010_consen 66 --GE----------L-YVGVGSDHTDRKLEAYS-----VAVSKQACPKPVAREAWRLDDVADHW---------------- 111 (194)
T ss_pred --Ce----------E-EEEecCCCccchhhhcC-----chhhhhcCCccchhhcCcHHHHHhhh----------------
Confidence 43 3 37999999999998653 246787665 5887555556776644
Q ss_pred cCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHh-cCcccCCCCEEEcCCCCCCccCCCCceEEEEec
Q 014670 294 KISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTI-NGCNLRSGDLLGTGTISGPEPESLGCLLELTWN 372 (420)
Q Consensus 294 ~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S-~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~ 372 (420)
+.+.|+.++..++ .+++.|+|.++.| -++.++|+-+ . ....+.+|-++++||.+-.|.+.+|+.+++++.
T Consensus 112 ---D~l~Lrsw~~~dg----~~~lYQeGtla~l-l~p~~ll~~~-~~~~~~~~~g~~m~~GT~~~~g~~~~a~~f~~eL~ 182 (194)
T PF11010_consen 112 ---DELELRSWITEDG----ERVLYQEGTLAAL-LPPADLLERL-GEGRGDLPEGTAMFCGTVPAIGGIRPADRFEMELE 182 (194)
T ss_pred ---hheeEEEEEeeCC----CEEEEeecchhhc-CCHHHHHHhh-hccCCCCCCCEEEEEeccccccCccccceEEEEEE
Confidence 5688888876643 4678999999976 4899999997 5 577899999999999988777777777777654
No 22
>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes. In most cases these proteins also contain IPR002529 from INTERPRO, which is found towards the C terminus. ; PDB: 3RR6_A 2DFU_D 3QDF_A.
Probab=88.61 E-value=0.38 Score=35.27 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=20.4
Q ss_pred CCeEEEeeCCCCCceeEEEECCeEEech
Q 014670 20 LPYGVFKPEPASVARPGVAIGEYVLDLS 47 (420)
Q Consensus 20 ~p~~~f~~~~~~~~r~Gv~~gd~viDL~ 47 (420)
|+|+.|++ ++..+.|++.||.|.-+.
T Consensus 1 Mr~~Rf~~--~g~~~~G~l~gd~v~~l~ 26 (50)
T PF10370_consen 1 MRIVRFSH--GGEIRYGVLEGDRVRVLD 26 (50)
T ss_dssp -EEEEEEE--TTEEEEEEEETTCEEEEC
T ss_pred CeEEEEee--CCCcEEEEEECCEEEEEE
Confidence 67899966 367999999999977554
No 23
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=62.68 E-value=34 Score=25.87 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=14.4
Q ss_pred CCeEEEecchhhhccCHHHHHHHH
Q 014670 314 DSCVVTRSNFKYLYWTLTQQLAHH 337 (420)
Q Consensus 314 NGe~~q~~~t~~m~~~~~~lIa~~ 337 (420)
||+.++-. .+ ++.++++++
T Consensus 6 Ng~~~~~~---~~--tl~~Ll~~l 24 (65)
T PRK06488 6 NGETLQTE---AT--TLALLLAEL 24 (65)
T ss_pred CCeEEEcC---cC--cHHHHHHHc
Confidence 99988862 22 899999875
No 24
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=48.33 E-value=30 Score=27.24 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=20.5
Q ss_pred CceEEEEecCccccccCCCCCccCCCCCEEEEEEE
Q 014670 364 GCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGF 398 (420)
Q Consensus 364 G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~ 398 (420)
|..+-+.+.|+-.. .+.|+.+||.|.+|.|
T Consensus 27 g~~vla~i~GKmr~-----~rI~I~~GD~V~Ve~s 56 (68)
T TIGR00008 27 GHEVLAHISGKIRM-----HYIRILPGDKVKVELS 56 (68)
T ss_pred CCEEEEEecCcchh-----ccEEECCCCEEEEEEC
Confidence 44555555554321 4689999999999965
No 25
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=47.74 E-value=23 Score=28.44 Aligned_cols=15 Identities=27% Similarity=0.069 Sum_probs=13.5
Q ss_pred CccCCCCCEEEEEEE
Q 014670 384 RKFLEDGDEVTFTGF 398 (420)
Q Consensus 384 ~~~L~~GD~V~~~~~ 398 (420)
..|+.+||+|.++-|
T Consensus 44 ~i~I~~GD~V~Ve~~ 58 (75)
T COG0361 44 RIRILPGDVVLVELS 58 (75)
T ss_pred eEEeCCCCEEEEEec
Confidence 689999999999965
No 26
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=45.05 E-value=51 Score=27.01 Aligned_cols=48 Identities=29% Similarity=0.399 Sum_probs=26.8
Q ss_pred CCCCEEEcCCCCCCccCCCCceEEEEecCcccccc-----CCC---CCccCCCCCEEEEEE
Q 014670 345 RSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSL-----DGF---TRKFLEDGDEVTFTG 397 (420)
Q Consensus 345 ~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l-----~~~---~~~~L~~GD~V~~~~ 397 (420)
++||++. |...++ .++...+.|++.-+..| ..+ .+.+|+.||.|-.++
T Consensus 5 ~~gD~VI-G~V~~~----~~~~~~VdI~s~~~a~L~~~~f~gatk~~rp~L~~GDlV~ArV 60 (86)
T cd05790 5 AKGDHVI-GIVVAK----AGDFFKVDIGGSEPASLSYLAFEGATKRNRPNLNVGDLVYARV 60 (86)
T ss_pred CCCCEEE-EEEEEE----cCCeEEEEcCCCcceEechHHcccccccccccCCCCCEEEEEE
Confidence 5677764 444433 34555555544322211 111 478999999997774
No 27
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=44.28 E-value=33 Score=28.33 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=21.2
Q ss_pred CCceEEEEecCccccccCCCCCccCCCCCEEEEEEE
Q 014670 363 LGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGF 398 (420)
Q Consensus 363 ~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~ 398 (420)
.|..+-+.+.|+-.. ...|+.+||.|.+|.|
T Consensus 28 nG~~vla~isGKmR~-----~rIrIl~GD~V~VE~s 58 (87)
T PRK12442 28 NGVEVGAYASGRMRK-----HRIRILAGDRVTLELS 58 (87)
T ss_pred CCCEEEEEeccceee-----eeEEecCCCEEEEEEC
Confidence 455555566664321 3679999999999965
No 28
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=44.09 E-value=39 Score=27.47 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.8
Q ss_pred CCccCCCCCEEEEEEE
Q 014670 383 TRKFLEDGDEVTFTGF 398 (420)
Q Consensus 383 ~~~~L~~GD~V~~~~~ 398 (420)
...|++.||.|.++.+
T Consensus 40 k~iwI~~GD~VlVe~~ 55 (83)
T smart00652 40 KKVWIRRGDIVLVDPW 55 (83)
T ss_pred ccEEEcCCCEEEEEec
Confidence 4689999999999854
No 29
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=42.56 E-value=38 Score=26.43 Aligned_cols=60 Identities=22% Similarity=0.403 Sum_probs=35.5
Q ss_pred cCCCCEEEcCCCCCCccCCCCceEEEE--ecCccccc-cCCC-------CCccCCCCCEEEEEEE-EeCCCcee
Q 014670 344 LRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF-------TRKFLEDGDEVTFTGF-CKGNGYTV 406 (420)
Q Consensus 344 L~pGDvI~TGTp~Gvg~~~~G~~le~~--~~G~~~~~-l~~~-------~~~~L~~GD~V~~~~~-~~~~~~~~ 406 (420)
|++||++ .|+...+. .-|..+++. +.|+-++. +.+. ....++.||.|++.+- ++.+..+|
T Consensus 1 ~k~G~~V-~g~V~~i~--~~G~fV~l~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i 71 (74)
T cd05705 1 IKEGQLL-RGYVSSVT--KQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLV 71 (74)
T ss_pred CCCCCEE-EEEEEEEe--CCcEEEEeCCCCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEE
Confidence 4678766 57776654 356666764 45544433 3221 1368999999998742 33344444
No 30
>PRK08582 hypothetical protein; Provisional
Probab=40.70 E-value=34 Score=30.42 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=38.8
Q ss_pred cccCCCCEEEcCCCCCCccCCCCceEEEE--ecCccccc-cCCC----CCccCCCCCEEEEEEEEeCCCceeeee
Q 014670 342 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF----TRKFLEDGDEVTFTGFCKGNGYTVGFG 409 (420)
Q Consensus 342 ~tL~pGDvI~TGTp~Gvg~~~~G~~le~~--~~G~~~~~-l~~~----~~~~L~~GD~V~~~~~~~~~~~~~g~G 409 (420)
|.++.|++ ..|++.++.. .|-.|++. +.|.-.+. +.+. ....++.||.|++.+.--.+.+.|.|.
T Consensus 1 m~~kvG~i-v~G~V~~I~~--fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~~gkI~LS 72 (139)
T PRK08582 1 MSIEVGSK-LQGKVTGITN--FGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVEDDGKIGLS 72 (139)
T ss_pred CCCcCCCE-EEEEEEEEEC--CeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECCCCcEEEE
Confidence 56888987 4899888754 46666664 33433332 3222 246799999999984222223455444
No 31
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=39.49 E-value=31 Score=33.70 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=18.2
Q ss_pred CccCCCCCEEEEEEEEeCCCceeeeeeeee
Q 014670 384 RKFLEDGDEVTFTGFCKGNGYTVGFGTCSG 413 (420)
Q Consensus 384 ~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~ 413 (420)
..++++||+|+++ ++ |+|+++=
T Consensus 232 ~~~v~~Gd~v~~~--~~------glG~v~~ 253 (255)
T TIGR03220 232 LVPVKAGDNLRVS--IG------GIGSCSV 253 (255)
T ss_pred CeeCCCCCEEEEE--Ec------CCceEEE
Confidence 4579999999998 66 8998764
No 32
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=39.28 E-value=50 Score=26.41 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.8
Q ss_pred CCccCCCCCEEEEEEE
Q 014670 383 TRKFLEDGDEVTFTGF 398 (420)
Q Consensus 383 ~~~~L~~GD~V~~~~~ 398 (420)
...|+++||.|.++.+
T Consensus 35 k~iwI~~GD~V~Ve~~ 50 (77)
T cd05793 35 KRVWINEGDIVLVAPW 50 (77)
T ss_pred ccEEEcCCCEEEEEec
Confidence 4689999999999955
No 33
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=39.27 E-value=37 Score=26.59 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=38.0
Q ss_pred cCCCCEEEcCCCCCCccCCCCceEEEEecCccccc-cCCCCC-ccCCCCCEEEEEE-EEeCCCcee
Q 014670 344 LRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS-LDGFTR-KFLEDGDEVTFTG-FCKGNGYTV 406 (420)
Q Consensus 344 L~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~~~-l~~~~~-~~L~~GD~V~~~~-~~~~~~~~~ 406 (420)
|..|++ .+||...+. .-|..+++.++|..-+- ..+-.. ..|+.||+|.+.. .++.++.++
T Consensus 2 l~~G~~-v~g~V~si~--d~G~~v~~g~~gv~Gfl~~~~~~~~~~~~~Gq~v~~~V~~vd~~~~~v 64 (74)
T cd05694 2 LVEGMV-LSGCVSSVE--DHGYILDIGIPGTTGFLPKKDAGNFSKLKVGQLLLCVVEKVKDDGRVV 64 (74)
T ss_pred CCCCCE-EEEEEEEEe--CCEEEEEeCCCCcEEEEEHHHCCcccccCCCCEEEEEEEEEECCCCEE
Confidence 567776 578887765 46888888655542221 111122 6799999999984 335566665
No 34
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=36.12 E-value=38 Score=25.75 Aligned_cols=51 Identities=25% Similarity=0.480 Sum_probs=33.5
Q ss_pred cCCCCEEEcCCCCCCccCCCCceEEEE--ecCccccc-cCCC----CCccCCCCCEEEEEE
Q 014670 344 LRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF----TRKFLEDGDEVTFTG 397 (420)
Q Consensus 344 L~pGDvI~TGTp~Gvg~~~~G~~le~~--~~G~~~~~-l~~~----~~~~L~~GD~V~~~~ 397 (420)
++.||++ +|+...+.. .|..+++. +.|.-|++ +... +...++.||.|++..
T Consensus 2 ~~~G~iv-~g~V~~v~~--~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v 59 (74)
T PF00575_consen 2 LKEGDIV-EGKVTSVED--FGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKV 59 (74)
T ss_dssp SSTTSEE-EEEEEEEET--TEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEE
T ss_pred CCCCCEE-EEEEEEEEC--CEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEE
Confidence 6778877 788877654 56677765 22232332 3321 568999999999874
No 35
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=35.28 E-value=28 Score=26.73 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=10.7
Q ss_pred CCccCCCCCEEEEEEE
Q 014670 383 TRKFLEDGDEVTFTGF 398 (420)
Q Consensus 383 ~~~~L~~GD~V~~~~~ 398 (420)
...|++.||.|.++.+
T Consensus 38 ~~iwI~~GD~V~V~~~ 53 (65)
T PF01176_consen 38 KRIWIKRGDFVLVEPS 53 (65)
T ss_dssp TCC---TTEEEEEEES
T ss_pred eeEecCCCCEEEEEec
Confidence 5789999999999843
No 36
>COG0146 HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.37 E-value=1.3e+02 Score=33.02 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=33.4
Q ss_pred CCeEEEecc-----hhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCC
Q 014670 314 DSCVVTRSN-----FKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTIS 356 (420)
Q Consensus 314 NGe~~q~~~-----t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~ 356 (420)
+|.++..+. +..|.+++..+|.+. .....|+||||++|=-|-
T Consensus 48 ~G~lVA~a~hipVHlGsM~~~vk~~i~~~-~~~~~l~pGDV~~~NdPy 94 (563)
T COG0146 48 EGNLVAQAPHIPVHLGSMSVSVKAMIRNN-KENPDLEPGDVFITNDPY 94 (563)
T ss_pred CCCeeccCCCCeEEecccHHHHHHHHHhh-ccCCCCCCCCEEEecCcc
Confidence 566665553 678999999999986 346799999999999984
No 37
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=31.33 E-value=23 Score=35.93 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=35.1
Q ss_pred CCCeEEEecchhhhccCHHHHHHHH--------H-------hcCcccCCCCEEEcCCCCCC
Q 014670 313 EDSCVVTRSNFKYLYWTLTQQLAHH--------T-------INGCNLRSGDLLGTGTISGP 358 (420)
Q Consensus 313 ~NGe~~q~~~t~~m~~~~~~lIa~~--------~-------S~~~tL~pGDvI~TGTp~Gv 358 (420)
+||++++++.-..-+|+.+-.++-- . +..+.|++||||..+|= |+
T Consensus 197 R~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~GDvIilATD-Gl 256 (330)
T KOG1379|consen 197 REGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKGDVIILATD-GL 256 (330)
T ss_pred ECCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEeccCCCEEEEecc-cc
Confidence 3999999999999999988665432 0 13468999999999996 54
No 38
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=30.88 E-value=79 Score=26.66 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.8
Q ss_pred CCccCCCCCEEEEEEE
Q 014670 383 TRKFLEDGDEVTFTGF 398 (420)
Q Consensus 383 ~~~~L~~GD~V~~~~~ 398 (420)
...|+++||.|.++.|
T Consensus 56 k~IwI~~GD~VlVe~~ 71 (100)
T PRK04012 56 KRMWIREGDVVIVAPW 71 (100)
T ss_pred ccEEecCCCEEEEEec
Confidence 4689999999999955
No 39
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=30.18 E-value=92 Score=24.98 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.5
Q ss_pred CCccCCCCCEEEEEEE
Q 014670 383 TRKFLEDGDEVTFTGF 398 (420)
Q Consensus 383 ~~~~L~~GD~V~~~~~ 398 (420)
...|++.||.|.++.+
T Consensus 35 k~iwI~~GD~VlV~~~ 50 (78)
T cd04456 35 KNIWIKRGDFLIVDPI 50 (78)
T ss_pred cCEEEcCCCEEEEEec
Confidence 3589999999999854
No 40
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=29.17 E-value=1.5e+02 Score=28.01 Aligned_cols=54 Identities=19% Similarity=0.076 Sum_probs=37.6
Q ss_pred ccCCCCEEEcCCC--CCCccCCCCceEEEEecCccccc-------cCCC--CCccCCCCCEEEEE
Q 014670 343 NLRSGDLLGTGTI--SGPEPESLGCLLELTWNGQKPLS-------LDGF--TRKFLEDGDEVTFT 396 (420)
Q Consensus 343 tL~pGDvI~TGTp--~Gvg~~~~G~~le~~~~G~~~~~-------l~~~--~~~~L~~GD~V~~~ 396 (420)
-..|||+|++.-. .|-|....|..+.+...|.-... +... .+..+|.||+|--+
T Consensus 7 ~v~PGd~~a~~EE~~~G~gt~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~~~~~~K~GdiV~gr 71 (188)
T COG1096 7 FVLPGDVLAVIEEFLPGEGTYEEGGEIRAAATGVVRRDDKNRVISVKPGKKTPPLPKGGDIVYGR 71 (188)
T ss_pred EEcCcceeeeeeeeecCCCeEeECCEEEEeecccEEEcccceEEEeccCCCCCCCCCCCCEEEEE
Confidence 3469999999887 67666666777777766643321 2222 37899999999766
No 41
>PRK04980 hypothetical protein; Provisional
Probab=29.07 E-value=81 Score=26.79 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=19.4
Q ss_pred cCccccccCCCCCccCCCCCEEEEE
Q 014670 372 NGQKPLSLDGFTRKFLEDGDEVTFT 396 (420)
Q Consensus 372 ~G~~~~~l~~~~~~~L~~GD~V~~~ 396 (420)
.|+++++++++....+++||+|.+.
T Consensus 17 sGkKTiTiRd~se~~~~~G~~~~V~ 41 (102)
T PRK04980 17 AGRKTITIRDESESHFKPGDVLRVG 41 (102)
T ss_pred cCCceEEeeCCcccCCCCCCEEEEE
Confidence 5677777776656789999999884
No 42
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=28.89 E-value=63 Score=26.66 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=15.9
Q ss_pred cCcccCCCCEEEcCCCCCC
Q 014670 340 NGCNLRSGDLLGTGTISGP 358 (420)
Q Consensus 340 ~~~tL~pGDvI~TGTp~Gv 358 (420)
+.=||+.||.|.+||-.|.
T Consensus 23 ~~GtL~~Gd~iv~G~~~Gk 41 (95)
T cd03701 23 QNGTLKKGDVIVAGGTYGK 41 (95)
T ss_pred EcCeEecCCEEEECCccce
Confidence 3459999999999998774
No 43
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=28.35 E-value=47 Score=31.60 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=18.1
Q ss_pred CceEEEEecCccccccCCCCCccCCCCCEEEEEEE
Q 014670 364 GCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGF 398 (420)
Q Consensus 364 G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~ 398 (420)
.|.+|+ +.|+.|+ ..-=|+|||+|+++++
T Consensus 185 ~dviEI----Iapv~LR--~~LnLkDGD~V~ieV~ 213 (214)
T COG1339 185 TDVIEI----IAPVKLR--DELNLKDGDEVTIEVL 213 (214)
T ss_pred cceEEE----EccHhHH--HHhCCCCCCEEEEEEe
Confidence 444555 3444443 2356999999999853
No 44
>PRK05807 hypothetical protein; Provisional
Probab=28.00 E-value=79 Score=27.92 Aligned_cols=51 Identities=24% Similarity=0.446 Sum_probs=32.8
Q ss_pred cccCCCCEEEcCCCCCCccCCCCceEEEEecCc---cccc-cCCC----CCccCCCCCEEEEEE
Q 014670 342 CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQ---KPLS-LDGF----TRKFLEDGDEVTFTG 397 (420)
Q Consensus 342 ~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~---~~~~-l~~~----~~~~L~~GD~V~~~~ 397 (420)
|.++.|++ .+|+..++.. .|-.|++ +|. -.+. +.++ ...+++.||+|++.+
T Consensus 1 m~~~vG~v-v~G~Vt~i~~--~GafV~L--~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV 59 (136)
T PRK05807 1 MTLKAGSI-LEGTVVNITN--FGAFVEV--EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKV 59 (136)
T ss_pred CCccCCCE-EEEEEEEEEC--CeEEEEE--CCEEEEEEhhhcccccccCccccCCCCCEEEEEE
Confidence 56788885 4899988764 5777776 332 1111 2222 246789999999873
No 45
>PLN00208 translation initiation factor (eIF); Provisional
Probab=25.94 E-value=83 Score=28.43 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=13.8
Q ss_pred CCccCCCCCEEEEEEE
Q 014670 383 TRKFLEDGDEVTFTGF 398 (420)
Q Consensus 383 ~~~~L~~GD~V~~~~~ 398 (420)
...|+++||.|.|+.|
T Consensus 67 KrIWI~~GD~VlVel~ 82 (145)
T PLN00208 67 KKVWIAAGDIILVGLR 82 (145)
T ss_pred eeEEecCCCEEEEEcc
Confidence 4689999999999955
No 46
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=25.52 E-value=77 Score=24.06 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCCCEEEcCCCCCCccCCCCceEEEE----ecCccccc-cCCC----CCccCCCCCEEEEEE
Q 014670 345 RSGDLLGTGTISGPEPESLGCLLELT----WNGQKPLS-LDGF----TRKFLEDGDEVTFTG 397 (420)
Q Consensus 345 ~pGDvI~TGTp~Gvg~~~~G~~le~~----~~G~~~~~-l~~~----~~~~L~~GD~V~~~~ 397 (420)
+.|+++ +|+..++. ..|..+++. +.|.-+.+ +.+. ....++.||.|++..
T Consensus 2 ~~G~~~-~g~V~~v~--~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv 60 (76)
T cd04452 2 EEGELV-VVTVKSIA--DMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKV 60 (76)
T ss_pred CCCCEE-EEEEEEEE--ccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEE
Confidence 456654 67777664 357777774 33433332 3222 345689999999873
No 47
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=24.40 E-value=92 Score=28.44 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=19.3
Q ss_pred CceEEEEecCccccccCCCCCccCCCCCEEEEEEE
Q 014670 364 GCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGF 398 (420)
Q Consensus 364 G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~~~~ 398 (420)
|..+-+.+.|+-. ...|+++||.|.|+.|
T Consensus 54 G~~rLa~I~GKmR------K~IWI~~GD~VlVel~ 82 (155)
T PTZ00329 54 GVKRLCHIRGKMR------KRVWINIGDIILVSLR 82 (155)
T ss_pred CCEEEEEeeccce------eeEEecCCCEEEEecc
Confidence 4444455555321 3589999999999854
No 48
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=23.47 E-value=96 Score=24.23 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=28.8
Q ss_pred ccCCCCEEEcCCCCCCccCCCCceEEEEecCc----cccc-cCC--C--CCccCCCCCEEEEEE
Q 014670 343 NLRSGDLLGTGTISGPEPESLGCLLELTWNGQ----KPLS-LDG--F--TRKFLEDGDEVTFTG 397 (420)
Q Consensus 343 tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~----~~~~-l~~--~--~~~~L~~GD~V~~~~ 397 (420)
+.++||++ +|+...+.. +.+.+.+.+. -++. +.. . ...+++.||.|++..
T Consensus 3 ~p~~GdiV-~G~V~~v~~----~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V 61 (82)
T cd04454 3 LPDVGDIV-IGIVTEVNS----RFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKV 61 (82)
T ss_pred CCCCCCEE-EEEEEEEcC----CEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEE
Confidence 45789988 788777642 2333333221 1111 211 1 356799999999884
No 49
>PRK07252 hypothetical protein; Provisional
Probab=23.21 E-value=97 Score=26.79 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=35.6
Q ss_pred CCCCEEEcCCCCCCccCCCCceEEEE--ecCccccc-cCCC----CCccCCCCCEEEEEEE-EeCCCcee
Q 014670 345 RSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF----TRKFLEDGDEVTFTGF-CKGNGYTV 406 (420)
Q Consensus 345 ~pGDvI~TGTp~Gvg~~~~G~~le~~--~~G~~~~~-l~~~----~~~~L~~GD~V~~~~~-~~~~~~~~ 406 (420)
+.|++ ..|+..++.. .|..|++. +.|.-++. +.+. ....++.||+|++.+. ++.+.++|
T Consensus 2 kvG~i-v~G~V~~V~~--~G~fVei~~~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri 68 (120)
T PRK07252 2 KIGDK-LKGTITGIKP--YGAFVALENGTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKA 68 (120)
T ss_pred CCCCE-EEEEEEEEeC--cEEEEEECCCCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEE
Confidence 45775 4788877753 57777775 34443333 3322 3467899999999842 23334455
No 50
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=22.92 E-value=2.4e+02 Score=23.20 Aligned_cols=57 Identities=30% Similarity=0.316 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhcCcccCCCCEEE-cCCCCCCccCCCCceEEEEecCccccccCCCCCccCCCCCEEEE
Q 014670 329 TLTQQLAHHTINGCNLRSGDLLG-TGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTF 395 (420)
Q Consensus 329 ~~~~lIa~~~S~~~tL~pGDvI~-TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~~ 395 (420)
++.++|+++..++..+ -.+++. .|++ .+| +-+-++|.. +++-.+..+-|++||+|.+
T Consensus 30 tV~dll~~L~~~~~~~-~~~lf~~~g~l------r~~--i~VlvN~~d-i~~l~g~~t~L~dgD~v~i 87 (94)
T cd01764 30 TVGDLLDYVASNLLEE-RPDLFIEGGSV------RPG--IIVLINDTD-WELLGEEDYILEDGDHVVF 87 (94)
T ss_pred cHHHHHHHHHHhCchh-hhhhEecCCcc------cCC--EEEEECCcc-ccccCCcccCCCCcCEEEE
Confidence 6789999985444332 122332 2332 222 233344433 2221224578999999987
No 51
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.87 E-value=83 Score=24.69 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=34.5
Q ss_pred cccCCCCEEEcCCCCCCccCCCCceEEEE--ecCccccc-cCCC----CCccCCCCCEEEEEE
Q 014670 342 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF----TRKFLEDGDEVTFTG 397 (420)
Q Consensus 342 ~tL~pGDvI~TGTp~Gvg~~~~G~~le~~--~~G~~~~~-l~~~----~~~~L~~GD~V~~~~ 397 (420)
-.|+.|+++ +|+..++.. .|..+++. +.|.-+.+ +.+. +...++.||+|++..
T Consensus 10 ~~~~~G~i~-~g~V~~v~~--~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV 69 (83)
T cd04461 10 SDLKPGMVV-HGYVRNITP--YGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKV 69 (83)
T ss_pred HhCCCCCEE-EEEEEEEee--ceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEE
Confidence 358999887 699887754 57777763 22333322 3222 346789999999984
No 52
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=21.22 E-value=1.5e+02 Score=25.02 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=12.8
Q ss_pred CCccCCCCCEEEEEE
Q 014670 383 TRKFLEDGDEVTFTG 397 (420)
Q Consensus 383 ~~~~L~~GD~V~~~~ 397 (420)
...|+++||.|.++-
T Consensus 54 k~iwI~~GD~VlVsp 68 (99)
T TIGR00523 54 KRIWIREGDVVIVKP 68 (99)
T ss_pred ccEEecCCCEEEEEE
Confidence 468999999999963
No 53
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=21.16 E-value=94 Score=32.03 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=51.7
Q ss_pred EEecchhhhccCHHHHHHHHHhcCc---ccCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCCCCccCCCCCEEE
Q 014670 318 VTRSNFKYLYWTLTQQLAHHTINGC---NLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVT 394 (420)
Q Consensus 318 ~q~~~t~~m~~~~~~lIa~~~S~~~---tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~~~~~L~~GD~V~ 394 (420)
+-.+-.+.++|-+-.=++|+-|.+. .|.|--|+.||+-.--|.++.||+ |.. ++-+.+-.-|-.+|-|.
T Consensus 129 lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDl------Gla--R~~~~plkpl~s~d~VV 200 (438)
T KOG0666|consen 129 LPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADL------GLA--RLFNNPLKPLASLDPVV 200 (438)
T ss_pred CCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecc------cHH--HHhhccccccccCCceE
Confidence 4455678889999999999766544 799999999999433344443432 222 22222456788899999
Q ss_pred EEEEEeC
Q 014670 395 FTGFCKG 401 (420)
Q Consensus 395 ~~~~~~~ 401 (420)
|+.|-.+
T Consensus 201 VTiWYRA 207 (438)
T KOG0666|consen 201 VTIWYRA 207 (438)
T ss_pred EEEEecC
Confidence 9988654
No 54
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=20.16 E-value=79 Score=26.26 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.0
Q ss_pred cCcccCCCCEEEcCCCCC
Q 014670 340 NGCNLRSGDLLGTGTISG 357 (420)
Q Consensus 340 ~~~tL~pGDvI~TGTp~G 357 (420)
+.=||+.||.|..|+-.|
T Consensus 23 ~~GtL~~Gd~iv~G~~~g 40 (95)
T cd03702 23 QNGTLKVGDVLVAGTTYG 40 (95)
T ss_pred EcCeEeCCCEEEEccccc
Confidence 445899999999999766
No 55
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=20.16 E-value=84 Score=26.27 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=19.2
Q ss_pred ccCCCCCEEEEEEEEeCCCceeeeeeeeeEEeeCC
Q 014670 385 KFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 419 (420)
Q Consensus 385 ~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~ 419 (420)
.-|..||.|++. |||...-+.-+++
T Consensus 35 ~aL~~G~~V~l~----------gFG~F~v~~R~aR 59 (94)
T COG0776 35 EALAKGERVELR----------GFGTFEVRERAAR 59 (94)
T ss_pred HHHHcCCeEEEe----------eeeeeEeeccCCC
Confidence 468999999887 8998876655544
Done!