RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 014670
         (420 letters)



>gnl|CDD|215461 PLN02856, PLN02856, fumarylacetoacetase.
          Length = 424

 Score =  796 bits (2057), Expect = 0.0
 Identities = 313/422 (74%), Positives = 351/422 (83%), Gaps = 2/422 (0%)

Query: 1   MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
             L+SFI+V PDS FPIQNLPYGVF PE  +  RPGVAIG+YVLDLS +S+AGLF+GP+L
Sbjct: 3   SPLKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLL 62

Query: 61  KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEML 120
            DSDCF QP LNKF+++GRPAWKEAR  LQ+LLS++E  LRDN+ LR+K+  PM  VEML
Sbjct: 63  SDSDCFSQPTLNKFMAMGRPAWKEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEML 122

Query: 121 LPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRP 180
           LP  IGDYTDFFSS  HA N GT+FRGP NA+  NW HLPI YHGRASSVV SGTDI RP
Sbjct: 123 LPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGTDIRRP 182

Query: 181 RGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWS 239
           RGQ  P  G+S P FGPS KLDFELEMAA VGPGNELGKPI VNEA DHIFG++LMNDWS
Sbjct: 183 RGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWS 242

Query: 240 ARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNY 299
           ARDIQ WEYVPLGPFLGKSF TT+SPWIVTLDALEPF CD+P QDP PLPYLAEK  K+Y
Sbjct: 243 ARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSY 302

Query: 300 DISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPE 359
           DISLEV IKPAG+  + VV RSNFK+LYWTL QQLAHHT+NGCNLR GDLLG+GTISGPE
Sbjct: 303 DISLEVAIKPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPE 362

Query: 360 PESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
           P SLGCLLELTW G + +SL  G  RKFLEDGDEV  +G+CKG+GY VGFGTCSGK++P+
Sbjct: 363 PGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPA 422

Query: 419 TP 420
            P
Sbjct: 423 LP 424


>gnl|CDD|162276 TIGR01266, fum_ac_acetase, fumarylacetoacetase.  This enzyme
           catalyzes the final step in the breakdown of tyrosine or
           phenylalanine to fumarate and acetoacetate [Energy
           metabolism, Amino acids and amines].
          Length = 415

 Score =  582 bits (1502), Expect = 0.0
 Identities = 253/416 (60%), Positives = 308/416 (74%), Gaps = 4/416 (0%)

Query: 5   SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKD-S 63
           SF+ V  +S FPIQNLPYGVF  +  S  R GVAIG+ +LDLS I  A LF GP L    
Sbjct: 1   SFVPVAENSDFPIQNLPYGVFSTQANSSPRIGVAIGDQILDLSVI--AHLFTGPALSKHQ 58

Query: 64  DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
             F Q  LN F++LGRPAWKEAR  LQ LLS+++A LRDNA LRQ++L P  +  M LP 
Sbjct: 59  HVFDQSTLNAFMALGRPAWKEARARLQNLLSASQARLRDNAALRQRALTPQAEATMHLPA 118

Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 183
           +IGDYTDF+SS+ HA N G +FRG  NA+  NW HLP+ YHGRASS+V+SGT + RP GQ
Sbjct: 119 QIGDYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGYHGRASSIVVSGTPLRRPMGQ 178

Query: 184 FAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243
             P    PP FGP + LD ELEMA  VGPGN LG+PI +++A +HIFGV+LMNDWSARDI
Sbjct: 179 TLPDNAKPPVFGPCKLLDMELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSARDI 238

Query: 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 303
           QAWEYVPLGPFL KSFGTT+SPW+V +DALEPF   +PKQDP+PLPYL       +DI+L
Sbjct: 239 QAWEYVPLGPFLAKSFGTTISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINL 298

Query: 304 EVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESL 363
           EV +K  G  +   + RSNFK++YWT+ QQLAHH++NGCNLR GDLLG+GTISG EP S 
Sbjct: 299 EVSLKGEGMSEPATICRSNFKHMYWTMLQQLAHHSVNGCNLRPGDLLGSGTISGSEPGSF 358

Query: 364 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
           G +LEL+W G+KP+ +  G TR FLEDGDEV   G C+G GY VGFG C+GK++P+
Sbjct: 359 GSMLELSWKGKKPIDVAQGETRTFLEDGDEVILRGHCQGEGYRVGFGECAGKVLPA 414


>gnl|CDD|220168 pfam09298, DUF1969, Domain of unknown function (DUF1969).  The
           N-terminal domain of fumarylacetoacetate hydrolase is
           functionally uncharacterized, and adopts a structure
           consisting of an SH3-like barrel.
          Length = 101

 Score =  139 bits (353), Expect = 1e-40
 Identities = 53/105 (50%), Positives = 65/105 (61%), Gaps = 4/105 (3%)

Query: 18  QNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSL 77
           QNLP+GVF        R GVAIG+ VLDL+ +  AGLF+G  L  +  F QP LN F++L
Sbjct: 1   QNLPFGVFSTAAGPAPRIGVAIGDQVLDLAALEAAGLFDGA-LGAAGVFAQPTLNAFMAL 59

Query: 78  GRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLP 122
           GRPAW   R  LQ+LLS     L DN  LR+ +LVP   VE+ LP
Sbjct: 60  GRPAWSAVRARLQELLSR---ELSDNQALREPALVPQADVELHLP 101


>gnl|CDD|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase
           family.  This family consists of fumarylacetoacetate
           (FAA) hydrolase, or fumarylacetoacetate hydrolase (FAH)
           and it also includes HHDD isomerase/OPET decarboxylase
           from E. coli strain W. FAA is the last enzyme in the
           tyrosine catabolic pathway, it hydrolyses
           fumarylacetoacetate into fumarate and acetoacetate which
           then join the citric acid cycle. Mutations in FAA cause
           type I tyrosinemia in humans this is an inherited
           disorder mainly affecting the liver leading to liver
           cirrhosis, hepatocellular carcinoma, renal tubular
           damages and neurologic crises amongst other symptoms.
           The enzymatic defect causes the toxic accumulation of
           phenylalanine/tyrosine catabolites. The E. coli W enzyme
           HHDD isomerase/OPET decarboxylase contains two copies of
           this domain and functions in fourth and fifth steps of
           the homoprotocatechuate pathway; here it decarboxylates
           OPET to HHDD and isomerises this to OHED. The final
           products of this pathway are pyruvic acid and succinic
           semialdehyde. This family also includes various
           hydratases and 4-oxalocrotonate decarboxylases which are
           involved in the bacterial meta-cleavage pathways for
           degradation of aromatic compounds. 2-hydroxypentadienoic
           acid hydratase, encoded by mhpD in E. coli, is involved
           in the phenylpropionic acid pathway of E. coli and
           catalyzes the conversion of 2-hydroxy pentadienoate to
           4-hydroxy-2-keto-pentanoate and uses a Mn2+ co-factor.
           OHED hydratase encoded by hpcG in E. coli is involved in
           the homoprotocatechuic acid (HPC) catabolism. XylI in P.
           putida is a 4-Oxalocrotonate decarboxylase.
          Length = 207

 Score =  129 bits (327), Expect = 2e-35
 Identities = 71/283 (25%), Positives = 105/283 (37%), Gaps = 88/283 (31%)

Query: 136 HHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 195
            HAK  G+        V    +  P+ +    S++V  G  IV PRG             
Sbjct: 11  SHAKELGS-------GVEPPDYGPPVFFLKPPSALVGPGDPIVLPRG------------- 50

Query: 196 PSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFL 255
            S++LD+E E+A V+G      + +   EA D++ G  L ND SARD+Q         F 
Sbjct: 51  -SERLDYEAELAVVIGKD---LRAVTPEEALDYVAGYTLANDVSARDLQD--RDYRPWFR 104

Query: 256 GKSF--GTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKE 313
            KSF     L PWIVT D L   A                      D+ L +++   G+ 
Sbjct: 105 AKSFDGFAPLGPWIVTPDELGDPA----------------------DLELRLRV--NGE- 139

Query: 314 DSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 373
              +V   +   + ++  + +AH +     L  GD++ TGT SG  P             
Sbjct: 140 ---LVQDGSTADMIFSPAELIAHLS-RFLTLEPGDIILTGTPSGRAP------------- 182

Query: 374 QKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 416
                       FL+ GD V             G GT   ++V
Sbjct: 183 ----------ALFLQPGDVVE--------VEIEGLGTLENRVV 207


>gnl|CDD|223257 COG0179, MhpD, 2-keto-4-pentenoate
           hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
           (catechol pathway) [Secondary metabolites biosynthesis,
           transport, and catabolism].
          Length = 266

 Score =  125 bits (316), Expect = 3e-33
 Identities = 79/357 (22%), Positives = 119/357 (33%), Gaps = 98/357 (27%)

Query: 64  DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
           D  L   L   L L   A       L +             +L     +   ++   LP 
Sbjct: 5   DGLLDGGLVVALLLEIAADALDIAELWEF------VPLALQSLPLAGELAEVRLLAPLPP 58

Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 183
                    +   HA+  G         +P      P+ +    ++V+     I  P G 
Sbjct: 59  PGKIVCVGRNYADHAEEMGK-----DRDIPE----EPVFFLKPPTAVIGPNDPIPLPPG- 108

Query: 184 FAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243
                        S+ LD+E E+A V+G     GK + V +A D+I G  + ND +ARD+
Sbjct: 109 -------------SKGLDYEGELAVVIGKR---GKDVSVEDALDYIAGYTIGNDVTARDL 152

Query: 244 QAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDI 301
           Q  E         K F T   + PWIVT D +          DPQ LP           +
Sbjct: 153 QMEEKGRPW-TRAKGFDTFAPVGPWIVTKDEIS---------DPQNLP-----------L 191

Query: 302 SLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPE 361
           SL V     G+    V  R N   + +++ + +A+ +     L  GD++ TGT SG    
Sbjct: 192 SLRVN----GE----VRQRGNTSDMIFSIPELIAYLS-RFMTLEPGDVILTGTPSGVG-- 240

Query: 362 SLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
                                   FL+ GD V      +      G G     +V  
Sbjct: 241 ------------------------FLKPGDVVE----VEIE----GIGELENTVVKE 265


>gnl|CDD|131356 TIGR02303, HpaG-C-term, 4-hydroxyphenylacetate degradation
           bifunctional isomerase/decarboxylase, C-terminal
           subunit.  This model represents one of two
           subunits/domains of the bifunctional
           isomerase/decarboxylase involved in
           4-hydroxyphenylacetate degradation. In E. coli and some
           other species this enzyme is encoded by a single
           polypeptide containing both this domain and the closely
           related N-terminal domain (TIGR02305). In other species
           such as Pasteurella multocida these domains are found as
           two separate proteins (usually as tandem genes).
           Together, these domains carry out the decarboxylation of
           5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to
           2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent
           isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
          Length = 245

 Score = 37.9 bits (88), Expect = 0.006
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 12/87 (13%)

Query: 202 FELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT 261
           +E E+A VVG   +  K +   +A D++ G  + ND++ RD     Y P      +   T
Sbjct: 95  YECELAVVVG---KTAKNVKREDAMDYVLGYTIANDYAIRDYLENYYRPNLRVKNRDTFT 151

Query: 262 TLSPWIVTLDALEPFACDSPKQDPQPL 288
            + PWIV  + +E         DP  L
Sbjct: 152 PIGPWIVDKEDVE---------DPMNL 169


>gnl|CDD|235891 PRK06933, PRK06933, type III secretion system protein; Validated.
          Length = 308

 Score = 32.4 bits (74), Expect = 0.41
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 329 TLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLD 380
           +L Q+L+H+     +    +   + T+S P P SL C+L+L W GQ   +L 
Sbjct: 15  SLRQRLSHYQ---QHFLWEEGKLSLTVSQP-PSSLDCILQLQWKGQ-TFTLY 61


>gnl|CDD|200525 cd11264, Sema_5B, The Sema domain, a protein interacting module, of
           semaphorin 5B (Sema5B).  Sema5B is expressed in regions
           of the basal telencephalon in rat. Sema5B is an
           inhibitory cue for corticofugal axons and acts as a
           source of repulsion for the appropriate guidance of
           cortical axons away from structures such as the
           ventricular zone as they navigate toward and within
           subcortical regions. In addition to its role as a
           guidance cue, Sema5B regulates the development and
           maintenance of synapse size and number in hippocampal
           neurons. In addition, the sema domain of Sema5B can be
           cleaved of the whole protein and exerts its function in
           regulation of synapse morphology. Sema5B belongs to the
           class 5 semaphorin family of proteins, which are
           transmembrane glycoproteins characterized by unique
           thrombospondin specific repeats in the extracellular
           region of the protein. Semaphorins are regulatory
           molecules involved in the development of the nervous
           system and in axonal guidance. They also play important
           roles in other biological processes, such as
           angiogenesis, immune regulation, respiration systems and
           cancer. The Sema domain is located at the N-terminus and
           contains four disulfide bonds formed by eight conserved
           cysteine residues. It serves as a receptor-recognition
           and -binding module.
          Length = 437

 Score = 32.3 bits (73), Expect = 0.51
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 8   EVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGP 58
           E++   + P Q+L YGVF     S+A   V       +LS I++A  FNGP
Sbjct: 241 ELQSTFYLPEQDLIYGVFTTNVNSIAASAVC----AFNLSAITQA--FNGP 285


>gnl|CDD|237193 PRK12764, PRK12764, hypothetical protein; Provisional.
          Length = 500

 Score = 31.6 bits (72), Expect = 0.86
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 29/101 (28%)

Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
           +SS+ +SG  + RP G              ++ L FE E+A V+G      + +   +A 
Sbjct: 52  SSSLALSGGTVERPAG--------------TELLAFEGEIALVIG---RPARRVSPEDAW 94

Query: 227 DHIFGVMLMNDWSARDIQAWE------------YVPLGPFL 255
            H+  V   ND    D++  +            + P+GP L
Sbjct: 95  SHVAAVTAANDLGVYDLRYADKGSNLRSKGGDGFTPIGPAL 135


>gnl|CDD|185125 PRK15203, PRK15203, 4-hydroxyphenylacetate degradation bifunctional
           isomerase/decarboxylase; Provisional.
          Length = 429

 Score = 30.0 bits (67), Expect = 2.3
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 200 LDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSF 259
           + +E E+  V+G   +  + +   +A D++ G  + ND++ RD     Y P      +  
Sbjct: 273 MHYEAELVVVIG---KQARKVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDG 329

Query: 260 GTTLSPWIVTLDAL 273
            T +   IV  +A+
Sbjct: 330 LTPILSTIVPKEAI 343


>gnl|CDD|221378 pfam12013, DUF3505, Protein of unknown function (DUF3505).  This
           family of proteins is functionally uncharacterized. This
           protein is found in eukaryotes. Proteins in this family
           are typically between 247 to 1018 amino acids in length.
           This region contains two segments that are likely to be
           C2H2 zinc binding domains.
          Length = 108

 Score = 28.1 bits (63), Expect = 2.9
 Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 3/32 (9%)

Query: 262 TLSPWIVTLDALEPFACDSPKQDPQPLPYLAE 293
            +  W    D  +P A   P     P+P L  
Sbjct: 48  AIRQWD---DLRDPEAVQWPSALSPPIPGLPV 76


>gnl|CDD|216811 pfam01960, ArgJ, ArgJ family.  Members of the ArgJ family catalyze
           the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in
           arginine biosynthesis.
          Length = 380

 Score = 29.3 bits (67), Expect = 4.1
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 383 TRKFLEDGDEVTFTGFCKGNG 403
            R+    G  VT  G  KG+G
Sbjct: 146 AREVEIGGKTVTIGGIAKGSG 166


>gnl|CDD|235441 PRK05388, argJ, bifunctional ornithine
           acetyltransferase/N-acetylglutamate synthase protein;
           Validated.
          Length = 395

 Score = 29.3 bits (67), Expect = 4.2
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 381 GFTRKFLEDGDEVTFTGFCKGNG 403
              R+   DG  VT  G  KG G
Sbjct: 151 QAAREVEIDGKTVTIGGIAKGAG 173


>gnl|CDD|176682 cd07261, Glo_EDI_BRP_like_11, This conserved domain belongs to a
           superfamily including the bleomycin resistance protein,
           glyoxalase I, and type I ring-cleaving dioxygenases.
           This protein family belongs to a conserved domain
           superfamily that is found in a variety of structurally
           related metalloproteins, including the bleomycin
           resistance protein, glyoxalase I, and type I
           ring-cleaving dioxygenases. A bound metal ion is
           required for protein activities for the members of this
           superfamily. A variety of metal ions have been found in
           the catalytic centers of these proteins including
           Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
           superfamily contains members with or without domain
           swapping.
          Length = 114

 Score = 27.2 bits (61), Expect = 7.7
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 207 AAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ 244
           +   G G+EL   +D   A D ++      +W A+ ++
Sbjct: 54  SDATGGGSELAFMVDDGAAVDALY-----AEWQAKGVK 86


>gnl|CDD|182650 PRK10691, PRK10691, hypothetical protein; Provisional.
          Length = 219

 Score = 28.1 bits (63), Expect = 8.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 344 LRSGDLLGTGTISGPEPESLGCLLELTWNGQ 374
           LR+GD++ TGT  G  P   G  L +T+NG 
Sbjct: 182 LRAGDVVLTGTPEGVGPLQSGDELTVTFNGH 212


>gnl|CDD|220238 pfam09430, DUF2012, Protein of unknown function (DUF2012).  This
          is a eukaryotic family of uncharacterized proteins.
          Length = 115

 Score = 26.9 bits (60), Expect = 9.1
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 6/52 (11%)

Query: 9  VEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
          +  D  F   N+P G +  +  S   PG       +D   +S  G      L
Sbjct: 23 LRRDGSFVFHNVPAGSYLLDVES---PGYRFEPVRVD---VSAKGKVRAVQL 68


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0701    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,820,099
Number of extensions: 2115335
Number of successful extensions: 1534
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1522
Number of HSP's successfully gapped: 20
Length of query: 420
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 321
Effective length of database: 6,546,556
Effective search space: 2101444476
Effective search space used: 2101444476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)