RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014670
(420 letters)
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 514 bits (1325), Expect = 0.0
Identities = 234/418 (55%), Positives = 290/418 (69%), Gaps = 2/418 (0%)
Query: 2 ALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK 61
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I + K
Sbjct: 1 GSMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPA-LSK 59
Query: 62 DSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLL 121
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M L
Sbjct: 60 HQHVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHL 119
Query: 122 PMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPR 181
P IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP
Sbjct: 120 PATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPM 179
Query: 182 GQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR 241
GQ P + PP +G + LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSAR
Sbjct: 180 GQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSAR 239
Query: 242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDI 301
DIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI
Sbjct: 240 DIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDI 299
Query: 302 SLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPE 361
+L V +K G + + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PE
Sbjct: 300 NLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPE 359
Query: 362 SLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
S G +LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 360 SFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 130 bits (327), Expect = 3e-34
Identities = 58/359 (16%), Positives = 109/359 (30%), Gaps = 62/359 (17%)
Query: 75 LSLGRPAWKEARDMLQKL-----LSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGD-Y 128
L+ AR + L + + + + + + P+ +
Sbjct: 43 LTRCSEVGHIARTLQAALDDWAHAGPRLERVAEGIETGAQPTMRFHEHDAASPLPRAFQW 102
Query: 129 TDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSG 188
D + ++H + +PA+++ P+ Y G + S + I+
Sbjct: 103 ADGSAYVNHVELVRKARNAE---MPASFWTDPLIYQGGSDSFLGPRDPILMADD------ 153
Query: 189 NSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEY 248
+ +D E E A +V ++EA I VML+ND S R + E
Sbjct: 154 --------AWGIDMEGEAAVIVDDV---PMGATLDEAKAAIRLVMLVNDVSLRGLIPGEL 202
Query: 249 VP-LGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQI 307
G + K + SP VT + L + + L + +
Sbjct: 203 AKGFGFYQSKPS-SAFSPVAVTPEELG---------EAW----------DGGKLHLPLHV 242
Query: 308 KPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLL 367
G+ + + + Q + H L +G ++G+GT+S G +
Sbjct: 243 DLNGEPFGRANAGID---MTFDFPQLIVHAA-RTRPLSAGTIIGSGTVSNKLEGGPGRPV 298
Query: 368 ELTWNGQKPLSLDGFTRK---------FLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 417
G ++ FL+ GD V K FG K+
Sbjct: 299 SEGGAGYSCIAELRMIETIEGGAPKTQFLKFGDVVRIE--MKDRTGHSIFGAIEQKVGK 355
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 86.6 bits (215), Expect = 4e-19
Identities = 46/235 (19%), Positives = 78/235 (33%), Gaps = 72/235 (30%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+S+ ++ PR S LD+E+E+A V+G G I+ ++A
Sbjct: 136 PTSISGPRDAVIAPRT--------------SHALDYEIEIAVVIGKP---GYRIERSQAI 178
Query: 227 DHIFGVMLMNDWSARDIQAWEYVPLGP-----FLGKSFGTT--LSPWIVTLDALEPFACD 279
H+ G ML ND +ARD+ P GK + T PW+ T +
Sbjct: 179 KHVAGYMLANDITARDVALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDT----- 233
Query: 280 SPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTI 339
+ D L + G+ + + + + + +
Sbjct: 234 ----TFETF-----------DFELRIN----GE----LRQSGSTVDMTLGFAEVVETVS- 269
Query: 340 NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVT 394
LR+GD++ TGT P G P ++L GD +
Sbjct: 270 ATIALRAGDIILTGT-----PGGCGF-------QFDP-------PRYLRPGDVIE 305
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 71.8 bits (177), Expect = 2e-14
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+S++ ++ P+G ++ + +E+E+A VVG K + +A
Sbjct: 75 NTSLLPHKGVVLYPKG--------------ARFVHYEVELAVVVG---RPMKRVRAKDAL 117
Query: 227 DHIFGVMLMNDWSARDIQAWEYVPLGPFL-GKSFGTT--LSPWIVTLDALEP 275
D++ G + ND ARD + P + K T L P++V + +P
Sbjct: 118 DYVLGYTIANDLVARDYVTNTF---RPPIRAKGRDTFLPLGPFLVVEEVEDP 166
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 72.3 bits (178), Expect = 2e-14
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 32/115 (27%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+S++ G I P + ++ E E+A V+G K + AA
Sbjct: 96 NTSIIGPGLPIQLPPS--------------ATEVHHEGELAIVIG---RPCKDVPAARAA 138
Query: 227 DHIFGVMLMNDWSARDIQA----WEYVPLGPFLGKSFGTT--LSPWIVTLDALEP 275
++I G + ND SARD Q W K T L PWIVT L+P
Sbjct: 139 ENILGYTIGNDVSARDHQRADGQW-------TRAKGHDTFCPLGPWIVT--DLDP 184
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 72.2 bits (178), Expect = 5e-14
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 32/125 (25%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+++ VRP + + +E E+ V+G + + + +A
Sbjct: 254 PNTLTGDNQTSVRPNN--------------IEYMHYEAELVVVIG---KQARNVSEADAM 296
Query: 227 DHIFGVMLMNDWSARDIQAWEYVPLGPFL-GKSFGTT--LSPWIVTLDALEPFACDSPKQ 283
D++ G + ND++ RD Y P L KS + IV +A+
Sbjct: 297 DYVAGYTVCNDYAIRDYLENYY---RPNLRVKSRDGLTPMLSTIVPKEAIP--------- 344
Query: 284 DPQPL 288
DP L
Sbjct: 345 DPHNL 349
Score = 68.0 bits (167), Expect = 1e-12
Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 35/141 (24%)
Query: 137 HAKNCG-TIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 195
+ P A P + + ++V+ G I P+
Sbjct: 15 QLDAWQEAFQQSPYKAPPKT----AVWFIKPRNTVIGCGEPIPFPQ-------------- 56
Query: 196 PSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQA---WEYVPLG 252
+K+ +A +VG + + +AA++I G L ND S +
Sbjct: 57 -GEKVLSGATVALIVG---KTATKVREEDAAEYIAGYALANDVSLPEESFYRPA------ 106
Query: 253 PFLGKSFGTT--LSPWIVTLD 271
K + + +
Sbjct: 107 -IKAKCRDGFCPIGETVALSN 126
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 70.3 bits (173), Expect = 7e-14
Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 47/174 (27%)
Query: 112 VPMGKVEMLLPME------IG-DYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLP---I 161
+ V +L P +G +Y + H + G F P F +
Sbjct: 34 YDLASVTLLPPATPTKIVCVGRNYRE------HIREMGHDFGEDLPKEPG-LFLKGPNAL 86
Query: 162 AYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPID 221
A G + + P +++L +E E+A VVG + + +
Sbjct: 87 ARPGNPRDPWGTAEPVPYPFF--------------TEELHYEGELAVVVG---DRMRHVP 129
Query: 222 VNEAADHIFGVMLMNDWSARDIQA----WEYVPLGPFLGKSFGTT--LSPWIVT 269
+A DH+ G + D +ARD+Q W KS L PW+ T
Sbjct: 130 PEKALDHVLGYTVAVDITARDVQKKDLQW-------VRAKSADKFLPLGPWLET 176
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 69.1 bits (170), Expect = 9e-14
Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 58/219 (26%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+++ G+ I+ P ++ L ELE+ V+G + + A
Sbjct: 50 STAYAPEGSPILMPAY--------------TRNLHHELELGVVMGKR---CRAVPEAAAM 92
Query: 227 DHIFGVMLMNDWSARDIQAWEYVPLGPF-LGKSFGTT--LSPWIVTLDALEPFACDSPKQ 283
D++ G L D +ARD+Q P+ L KSF + +S ++
Sbjct: 93 DYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPK----------EKIP 142
Query: 284 DPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH----HTI 339
DP + L+V + + + +++ +++ T
Sbjct: 143 DPH-----------KLKLWLKV--------NGELRQEGETSSMIFSIPYIISYVSKIIT- 182
Query: 340 NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLS 378
L GD++ TGT G P +E +G ++
Sbjct: 183 ----LEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMT 217
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 67.9 bits (167), Expect = 3e-13
Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 70/205 (34%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
ASS V G P+ + ELE+A ++G + + A
Sbjct: 47 ASSAVPFGPVFSIPKD--------------QGSVHHELEIAILIG---KALSRASTEQVA 89
Query: 227 DHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--LSPWIVTLDALEPF 276
+ I G+ L D + RD+Q WE KSF L+ ++
Sbjct: 90 ESIAGIGLGLDLTLRDVQDQLKEKGHPWE-------RAKSFDGACPLTEFVAV------- 135
Query: 277 ACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH 336
+ ++LE + + + + + + +AH
Sbjct: 136 -----NLASEDEWQ-------AIGLTLEK--------NGQFQQQGSSAEMLFPILPLIAH 175
Query: 337 ----HTINGCNLRSGDLLGTGTISG 357
+ L+ GD++ TGT +G
Sbjct: 176 MSEHFS-----LQPGDVILTGTPAG 195
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
Length = 221
Score = 67.5 bits (166), Expect = 3e-13
Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 72/205 (35%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+++ + P+ + E+E+A ++G K + A
Sbjct: 51 ETALCDIRQPVSIPKD--------------FGSVHHEIELAVLIGTP---LKQASEDRVA 93
Query: 227 DHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--LSPWIVTLDALEPF 276
I G + D + R++QA WE K+F + +S +I
Sbjct: 94 RAIAGYGVALDLTLRELQAGFKKAGQPWE-------KAKAFDGSCPISGFIPV------- 139
Query: 277 ACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAH 336
+ D Q D+SL + + + + N + + + +++
Sbjct: 140 ---AEFGDAQ-----------QADLSLTI--------NGEIRQQGNTRDMITPIIPLISY 177
Query: 337 ----HTINGCNLRSGDLLGTGTISG 357
T LR+GD++ TGT G
Sbjct: 178 MSRFFT-----LRAGDIVLTGTPQG 197
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 68.6 bits (168), Expect = 4e-13
Identities = 43/230 (18%), Positives = 69/230 (30%), Gaps = 79/230 (34%)
Query: 167 ASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA 226
+ V G I S+ E E+A V+ +
Sbjct: 121 PNRCVGHGEAIAVRSD--------------SEWTLPEPELAVVLD-------------SN 153
Query: 227 DHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQD 284
I G +M+D SARD++A PL K + P IVT D ++ +
Sbjct: 154 GKILGYTIMDDVSARDLEAEN--PLYLPQSKIYAGCCAFGPVIVTSDEIK---------N 202
Query: 285 PQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNL 344
P L DI+L++ + N + + ++ + I +
Sbjct: 203 PYSL-----------DITLKIV----REGRVFFEGSVNTNKMRRKI-EEQIQYLIRDNPI 246
Query: 345 RSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVT 394
G +L TGT P G + L+D D V
Sbjct: 247 PDGTILTTGTAIVP----------------------GRDK-GLKDEDIVE 273
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 60.8 bits (148), Expect = 1e-10
Identities = 37/218 (16%), Positives = 64/218 (29%), Gaps = 66/218 (30%)
Query: 167 ASSVVISGTDIVRPRG--------QFAPSGNSPPPFGP--SQKLDFELEMAAVVGPGNEL 216
SS+V + + G +P P K+ E+E+A +V +
Sbjct: 41 TSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVS---KH 97
Query: 217 GKPIDVN---EAADHIFGVMLMNDWSARDIQA--------WEYVPLGPFLGKSFGTT--L 263
+ E D I GV L D +AR++Q W + K F T +
Sbjct: 98 LSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWT-------ISKGFDTFMPI 150
Query: 264 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNF 323
S + + + + V + +
Sbjct: 151 SAIVSREK----------------FSSYKSNLQDIFRVKCSV--------NGQLRQDGGT 186
Query: 324 KYLYWTLTQQLAH----HTINGCNLRSGDLLGTGTISG 357
+ L + L H + L GD++ TGT +G
Sbjct: 187 NLMLHPLHKILQHISTMIS-----LEPGDIILTGTPAG 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.003
Identities = 70/443 (15%), Positives = 120/443 (27%), Gaps = 178/443 (40%)
Query: 46 LSEISKAG------LFNGPILKDSDCFLQPNLNKFLS-LGRPAWKEARDMLQKLLSSNEA 98
L G +F G Q N + + L R ++ ++ L+ +
Sbjct: 145 LFRAVGEGNAQLVAIFGG----------QGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAE 193
Query: 99 TLRD--NANLRQKSLVPMG-KVEMLL--PMEIGDYTDFFSS-------------MHHAKN 140
TL + L + + G + L P D D+ S H+
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD-KDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 141 CGTIFRGPANAVPANWFHLP-IAYHGRA--SSVVISGTD------------------I-V 178
+ P +L H + ++V I+ TD I V
Sbjct: 253 AKLLGFTPGELRS----YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 179 R-----PRGQFAPS--------GNSPPPFGPSQKLDFELEMAAVVG-PGNELGKPID-VN 223
R P PS P P M ++ ++ ++ N
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVP--SP---------MLSISNLTQEQVQDYVNKTN 357
Query: 224 E---AADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPF---A 277
A + + L+N A++ V GP P +L L A
Sbjct: 358 SHLPAGKQVE-ISLVN--GAKN-----LVVSGP-----------P--QSLYGLNLTLRKA 396
Query: 278 CDSPKQDPQPLPYLAEK--ISKNYD-IS-------LEVQIKPAG---KEDSCVVTRSNFK 324
D +P+ K S + ++ L PA +D + ++N
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV----PASDLINKD---LVKNNVS 449
Query: 325 YLYWTLTQQLA---HHTINGCNLR--SGDLL----------------------------G 351
+ + + + T +G +LR SG + G
Sbjct: 450 ---FN-AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG 505
Query: 352 TGTISGPEPESLGCLLELTWNGQ 374
G SG LG L +G
Sbjct: 506 PGGASG-----LGVLTHRNKDGT 523
Score = 34.6 bits (79), Expect = 0.070
Identities = 31/200 (15%), Positives = 52/200 (26%), Gaps = 62/200 (31%)
Query: 79 RPAWKEA-RDMLQKLLSSNEATLRDNANLRQKSLV-----PMGK--VEMLLPMEIGDYTD 130
+ W A S + +N +L GK E M D
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNP----VNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 131 -------FFSSMHHAKNCGTIFRGPA-------NAVPA-------------NWFHLP--- 160
F ++ + FR PA + +P
Sbjct: 1699 GKLKTEKIFKEINE-HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 161 -IAYH--G-----RASSVVIS---GTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAV 209
A H G + + V+S ++V RG P + ++ M A
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM---QVAVPRDELGRSNY--GMIA- 1811
Query: 210 VGPGNELGKPIDVNEAADHI 229
+ PG + EA ++
Sbjct: 1812 INPG-RVAASFS-QEALQYV 1829
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.011
Identities = 53/371 (14%), Positives = 89/371 (23%), Gaps = 125/371 (33%)
Query: 55 FNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPM 114
F + + DC K+ +DM + +LS E D+ + K +
Sbjct: 25 FEDAFVDNFDC-----------------KDVQDMPKSILSKEEI---DHI-IMSKD--AV 61
Query: 115 GKVEMLL------PMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRAS 168
L E+ F + N + PI R
Sbjct: 62 SGTLRLFWTLLSKQEEM--VQKFVEEVL-RIN-------------YKFLMSPIKTEQRQP 105
Query: 169 SVVISGTDIVRPRGQFAPSGNSPPPFGP----SQKLDFELEMA----------AVVG-PG 213
S++ R R N F + +L A + G G
Sbjct: 106 SMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDAL 273
GK + + + F W+ L
Sbjct: 161 --SGKTWVALDVC--------------LSYKVQCKMDFKIF-----------WL-NLKN- 191
Query: 274 EPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQ 333
C+SP+ + L L +I N+ + + + L +
Sbjct: 192 ----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----------KLRIHSIQAELRRL 237
Query: 334 LAHHTINGC-----NLRSGDLLGTGTISGPEPESLGC-LLELTWNGQKPLSLDGFTRK-- 385
L C N+++ +L C +L T Q L T
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAW--------NAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 386 FLEDGDEVTFT 396
L+ T T
Sbjct: 290 SLDHHSM-TLT 299
Score = 34.1 bits (77), Expect = 0.091
Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 76/218 (34%)
Query: 6 FIEVEPDSHFPIQNLPYGVFKPEPASV-ARPGVAIGEYVLDLSEISKAG------LFNGP 58
F+ +H + + + E S+ + + DL +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSII-AE 335
Query: 59 ILKD----SDCFLQPNLNKF-----LSLG--RPAWKEARDMLQKLLSSNEATLRDNANLR 107
++D D + N +K SL PA E R M +L + +A+
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRL-----SVFPPSAH-- 386
Query: 108 QKSLVPMGKVEML-------LPMEI-----------GDYTDFFSSMH------------- 136
+P + ++ M + + S+
Sbjct: 387 ----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 137 ---HAK--NCGTIFRG-PANAVPANW----FHLPIAYH 164
H + I + ++ + + F+ I +H
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S
genomics, joint center for structural genomics, JCSG;
HET: MSE UNL; 2.00A {Bacillus halodurans}
Length = 208
Score = 28.3 bits (64), Expect = 4.1
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 381 GFTRKFLEDGDEVTFTGFCKGNG 403
+ + +G VT G KG+G
Sbjct: 179 HTCYQTIVNGKTVTVGGVAKGSG 201
>3it4_A Arginine biosynthesis bifunctional protein ARGJ alpha chain;
ornithine acetyltransferase, structural genomics; 1.70A
{Mycobacterium tuberculosis} PDB: 3it6_A
Length = 199
Score = 27.2 bits (61), Expect = 7.8
Identities = 7/17 (41%), Positives = 7/17 (41%)
Query: 387 LEDGDEVTFTGFCKGNG 403
L D T G KG G
Sbjct: 176 LHHHDNWTVGGMAKGAG 192
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 9.4
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 8/31 (25%)
Query: 267 IVTLDA-LEPFACDSPKQDPQPLPYLAEKIS 296
+ L A L+ +A DS P LA K +
Sbjct: 22 LKKLQASLKLYADDSA-------PALAIKAT 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.429
Gapped
Lambda K H
0.267 0.0823 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,645,476
Number of extensions: 399319
Number of successful extensions: 852
Number of sequences better than 10.0: 1
Number of HSP's gapped: 826
Number of HSP's successfully gapped: 22
Length of query: 420
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,021,377
Effective search space: 1302926148
Effective search space used: 1302926148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)