BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014671
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ELB|A Chain A, Human Ctp: Phosphoethanolamine Cytidylyltransferase In
Complex With Cmp
Length = 341
Score = 292 bits (747), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 221/347 (63%), Gaps = 29/347 (8%)
Query: 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
VRV+ DGC+D +HYGH+N LRQA+A GD L+VGV +DEEI +KGPPV + EER V
Sbjct: 8 VRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGPPVFTQEERYKXVQA 67
Query: 126 LKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQI 185
+KWVDEV+ APY T + +++ + D+ +HG+D L DG D Y K+ GRY++
Sbjct: 68 IKWVDEVVPAAPYVTTLETLDK----YNCDFCVHGNDITLTVDGRDTYEEVKQAGRYREC 123
Query: 186 KRTEGVSSTDIVGRIL-------SSMEDTKACEDHNNA--SLP--RDPLRAIQSKDAHLS 234
KRT+GVS+TD+VGR L SS E + ++ ++ P R+P + S
Sbjct: 124 KRTQGVSTTDLVGRXLLVTKAHHSSQEXSSEYREYADSFGKCPGGRNPWTGV-------S 176
Query: 235 QFLPTSRRIVQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGD--FLLVGIYT 292
QFL TS++I+QF++ K P P V+Y+ GAFDLFH GHV+ L+K +L + +++ G++
Sbjct: 177 QFLQTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHF 236
Query: 293 DQIV---RGSYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVS 349
DQ V +G +PI +LHER+LSVLACRYV EV+IGAP+ VT ++++ F + LV HG
Sbjct: 237 DQEVNHYKGKNYPIXNLHERTLSVLACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTE 296
Query: 350 ETNTPLTGQSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAY 396
P SDPY+ K GIF+ ++S ++TT + QRII N Y
Sbjct: 297 --IIPDRDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRLEY 341
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 253 GPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTD-QIVRGSYHPIMHLHERSL 311
G A V+ DG +D H GH L++AR GD+L+VG++TD +I + P+ ER
Sbjct: 4 GRRAVRVWCDGCYDXVHYGHSNQLRQARAXGDYLIVGVHTDEEIAKHKGPPVFTQEERYK 63
Query: 312 SVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIF 371
V A ++VDEV+ AP+ T + + +N VHG ++ + G+ D YE K G +
Sbjct: 64 XVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHG--NDITLTVDGR-DTYEEVKQAGRY 120
Query: 372 QLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKKYY 411
+ + + ++TT + R + +A+ ++++ SE + Y
Sbjct: 121 RECKRTQGVSTTDLVGRXLLVTKAH--HSSQEXSSEYREY 158
>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
pdb|3HL4|B Chain B, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
Length = 236
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query: 66 VRVYMDGCFDLMHYGHANALRQAKAL--GDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
VRVY DG FDL H GHA AL QAK L L+VGV SDE KG V++ ER V
Sbjct: 77 VRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAV 136
Query: 124 SGLKWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYK 183
++VDEV+ NAP+ +T +F+ EH+ID++ H D P D Y K+ G +
Sbjct: 137 QHCRYVDEVVRNAPWTLTPEFLA----EHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFA 192
Query: 184 QIKRTEGVSSTDIVGRIL 201
+RTEG+S++DI+ RI+
Sbjct: 193 PTQRTEGISTSDIITRIV 210
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 92/172 (53%), Gaps = 7/172 (4%)
Query: 242 RIVQFSNCKG-PGPNARVVYIDGAFDLFHAGHVEILKKARQL--GDFLLVGIYTDQIVRG 298
R+ C+G P VY DG FDLFH+GH L +A+ L +L+VG+ +D++
Sbjct: 61 RVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHN 120
Query: 299 -SYHPIMHLHERSLSVLACRYVDEVIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTG 357
+M+ +ER +V CRYVDEV+ APW +T + + I V H + ++ G
Sbjct: 121 FKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSS---AG 177
Query: 358 QSDPYEVAKSMGIFQLLESPKSITTTSVAQRIIANHEAYMKRNAKKAVSEKK 409
D Y+ K G+F + + I+T+ + RI+ +++ Y +RN ++ + K+
Sbjct: 178 SDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKE 229
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1N1D|A Chain A, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|B Chain B, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|C Chain C, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|D Chain D, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
Length = 129
Score = 68.2 bits (165), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 7/88 (7%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTD----QIVRGSYHPIMHLHERSLSVLACRY 318
G FDL H GH+++L++A+QLGD+L+V I TD Q + +YH H R L + RY
Sbjct: 8 GTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEH---RKLILETIRY 64
Query: 319 VDEVIIGAPWEVTKDMITTFNICLVVHG 346
VDEVI WE K I NI + V G
Sbjct: 65 VDEVIPEKNWEQKKQDIIDHNIDVFVMG 92
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
+V G FDL+H+GH L +AK LGD LVV + +DE + + S E R ++ +
Sbjct: 3 KVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQKQKKAYHSYEHRKLILETI 62
Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
++VDEVI + +Q + +H ID + GD D + K +
Sbjct: 63 RYVDEVIPEKNWEQKKQDI----IDHNIDVFVMGD------DWEGKFDFLKDQCEVVYLP 112
Query: 187 RTEGVSSTDI 196
RTEG+S+T I
Sbjct: 113 RTEGISTTKI 122
>pdb|2B7L|A Chain A, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|B Chain B, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|C Chain C, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
pdb|2B7L|D Chain D, Crystal Structure Of Ctp:glycerol-3-Phosphate
Cytidylyltransferase From Staphylococcus Aureus
Length = 132
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHE-RSLSVLACRYVDE 321
G +DL H GH+E+L++AR++GD+L+V + TD+ + + + +E R + + + RYVD
Sbjct: 8 GTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESIRYVDL 67
Query: 322 VIIGAPWEVTKDMITTFNICLVVHGTVSETNTPLTGQSDPYEVAKSMGIFQLLESPKSIT 381
VI W +D + F++ + V G E D EV L+ + I+
Sbjct: 68 VIPEKGWGQKEDDVEKFDVDVFVMGHDWEGEFDFL--KDKCEVI-------YLKRTEGIS 118
Query: 382 TTSVAQRI 389
TT + Q +
Sbjct: 119 TTKIKQEL 126
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 67 RVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGL 126
RV G +DL+HYGH LR+A+ +GD L+V + +DE E+R ++ +
Sbjct: 3 RVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLESI 62
Query: 127 KWVDEVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIK 186
++VD VI + E + + +D + G D + K +K
Sbjct: 63 RYVDLVIPEKGWGQKEDDVEKF----DVDVFVMG------HDWEGEFDFLKDKCEVIYLK 112
Query: 187 RTEGVSSTDI 196
RTEG+S+T I
Sbjct: 113 RTEGISTTKI 122
>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core
Biosynthesis Protein From Thermoplasma Volcanium Gss1
pdb|3GLV|B Chain B, Crystal Structure Of The Lipopolysaccharide Core
Biosynthesis Protein From Thermoplasma Volcanium Gss1
Length = 143
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%)
Query: 66 VRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG 125
+RV G FD++H GH + L+++K LGDELVV V D N P+ RLAL+S
Sbjct: 3 IRVMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISE 62
Query: 126 LKWVDEVI 133
LK VD I
Sbjct: 63 LKVVDRAI 70
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 263 GAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYH-PIMHLHERSLSVLACRYVDE 321
G FD+ H GH+ LK++++LGD L+V + D R + PI + R + + VD
Sbjct: 9 GVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDR 68
Query: 322 VIIGAPWEVTKDMI 335
I+G ++ K +I
Sbjct: 69 AILGHEGDMMKTVI 82
>pdb|3PXU|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Burkholderia Pseudomallei Bound
To Dephospho-Coenzyme A
Length = 170
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
G FD + GH + +R+A ++ D LVVGV A K P S+EER LK +E
Sbjct: 12 GTFDPLTRGHEDLVRRASSIFDTLVVGVADSR---AKK--PFFSLEER------LKIANE 60
Query: 132 VIANAP 137
V+ + P
Sbjct: 61 VLGHYP 66
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 251 GPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHER 309
GPG VY G FD GH +++++A + D L+VG+ + + P L ER
Sbjct: 1 GPGSMVVAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVGVADSR----AKKPFFSLEER 54
>pdb|3K9W|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Burkholderia Pseudomallei With
Hydrolyzed 3'-Dephospho Coenzyme A
Length = 187
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSGLKWVDE 131
G FD + GH + +R+A ++ D LVVGV A K P S+EER LK +E
Sbjct: 29 GTFDPLTRGHEDLVRRASSIFDTLVVGVADSR---AKK--PFFSLEER------LKIANE 77
Query: 132 VIANAP 137
V+ + P
Sbjct: 78 VLGHYP 83
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 247 SNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHL 306
+ +GPG VY G FD GH +++++A + D L+VG+ + + P L
Sbjct: 14 AQTQGPGSMVVAVY-PGTFDPLTRGHEDLVRRASSIFDTLVVGVADSR----AKKPFFSL 68
Query: 307 HER 309
ER
Sbjct: 69 EER 71
>pdb|3GZS|A Chain A, Crystal Structure Of A Susd Superfamily Protein (Bf3413)
From Bacteroides Fragilis Nctc 9343 At 2.10 A Resolution
pdb|3GZS|B Chain B, Crystal Structure Of A Susd Superfamily Protein (Bf3413)
From Bacteroides Fragilis Nctc 9343 At 2.10 A Resolution
Length = 515
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 131 EVIANAPYAITEQFMNRLFNEHKIDYIIHGDDPCLLPDGTDAYALAKKVGRYKQIKRTEG 190
E+ ANAP +IT ++ N E K++ II + P+G +A+ ++ G +QI E
Sbjct: 397 ELSANAPSSITIRWENGATEEEKLERIITQKYLAIFPNGQEAWTEWRRTGYPRQIVVAEN 456
Query: 191 VSSTDIV 197
+++ ++
Sbjct: 457 KTNSAVL 463
>pdb|1F9A|A Chain A, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|B Chain B, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|C Chain C, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|D Chain D, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|E Chain E, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adenylyltransferase From
Methanococcus Jannaschii
Length = 168
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 260 YIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQ 294
+I G F FH GH+E++KK + D +++GI + Q
Sbjct: 4 FIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQ 38
>pdb|1OD6|A Chain A, The Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Thermus Thermophilus In Complex
With 4'-Phosphopantetheine
Length = 160
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
G FD + GH + +++A L +++ V V+ + + +G + S EERLA++
Sbjct: 7 GSFDPLTNGHLDVIQRASRLFEKVTVAVLENP---SKRGQYLFSAEERLAII 55
>pdb|3ND5|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND6|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND7|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
Length = 171
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGV 99
G FD M GH N + ++ L DE+++GV
Sbjct: 9 GSFDPMTNGHLNLIERSAKLFDEVIIGV 36
>pdb|3OP1|A Chain A, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
pdb|3OP1|B Chain B, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
pdb|3OP1|C Chain C, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
Length = 308
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 244 VQFSNCKGPGPNARVVYIDGAFDLFHAGHVEILKKARQLG--DFLLVGIYT----DQIVR 297
+ N K G + V + G FD H GH E+ + A + D L + + T +I
Sbjct: 8 IPIKNQKDIGTPSDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVXTFNESPKIAL 67
Query: 298 GSYHPIMHLH 307
YHP + LH
Sbjct: 68 EPYHPDLFLH 77
>pdb|1VLH|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
pdb|1VLH|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Tm0741) From Thermotoga Maritima At
2.20 A Resolution
Length = 173
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALVSG-LKWVD 130
G FD + GH + +++A ++ DELVV V + + + ++EER L+ L +D
Sbjct: 19 GSFDPITLGHVDIIKRALSIFDELVVLVTEN-----PRKKCMFTLEERKKLIEEVLSDLD 73
Query: 131 EVIANAPYAITEQFMNRLFNEHKIDYIIHG 160
V + + + ++ + H I ++ G
Sbjct: 74 GVKVDVHHGLLVDYLKK----HGIKVLVRG 99
>pdb|1QJC|A Chain A, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
pdb|1QJC|B Chain B, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
Length = 158
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHER 309
R +Y G FD GH++I+ +A Q+ D +++ I S P+ L ER
Sbjct: 3 RAIY-PGTFDPITNGHIDIVTRATQMFDHVILAIAAS----PSKKPMFTLEER 50
>pdb|1B6T|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With 3'-
Dephospho-Coa From Escherichia Coli
pdb|1B6T|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With 3'-
Dephospho-Coa From Escherichia Coli
pdb|1GN8|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1GN8|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1H1T|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With
Coenzyme A From Escherichia Coli
pdb|1H1T|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With
Coenzyme A From Escherichia Coli
Length = 159
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 257 RVVYIDGAFDLFHAGHVEILKKARQLGDFLLVGIYTDQIVRGSYHPIMHLHER 309
R +Y G FD GH++I+ +A Q+ D +++ I S P+ L ER
Sbjct: 4 RAIY-PGTFDPITNGHIDIVTRATQMFDHVILAIAAS----PSKKPMFTLEER 51
>pdb|3INN|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine-Ligase In
Complex With Atp At Low Occupancy At 2.1 A Resolution
pdb|3INN|B Chain B, Crystal Structure Of Pantoate-Beta-Alanine-Ligase In
Complex With Atp At Low Occupancy At 2.1 A Resolution
pdb|3INN|C Chain C, Crystal Structure Of Pantoate-Beta-Alanine-Ligase In
Complex With Atp At Low Occupancy At 2.1 A Resolution
pdb|3INN|D Chain D, Crystal Structure Of Pantoate-Beta-Alanine-Ligase In
Complex With Atp At Low Occupancy At 2.1 A Resolution
Length = 314
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 268 FHAGHVEILKKARQLGDFLLVGIYTDQIVRGS 299
H GH+E++++AR D LV I+ + + G+
Sbjct: 54 LHKGHLELVRRARVENDVTLVSIFVNPLQFGA 85
>pdb|1OGC|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGC|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGD|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
D-Ribose
pdb|1OGE|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGE|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
Ribose 5-Phosphate
pdb|1OGF|A Chain A, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|B Chain B, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|C Chain C, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|D Chain D, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
pdb|1OGF|E Chain E, The Structure Of Bacillus Subtilis Rbsd Complexed With
Glycerol
Length = 131
Score = 28.5 bits (62), Expect = 8.4, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 19/88 (21%)
Query: 101 SDEEIIANKGPPV--------LSMEERL-------ALVSGLKWVDEVIANAPYAITEQ-- 143
+D+ +IA+ G PV LS++ L A+++ V++VIA A + Q
Sbjct: 21 TDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAAAEIKASNQEN 80
Query: 144 --FMNRLFNEHKIDYIIHGDDPCLLPDG 169
F+ LF+E +I+Y+ H + L D
Sbjct: 81 AKFLENLFSEQEIEYLSHEEFKLLTKDA 108
>pdb|3NV7|A Chain A, Crystal Structure Of H.Pylori Phosphopantetheine
Adenylyltransferase Mutant I4vN76Y
Length = 157
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 65 RVRVYMDGCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
+V +Y G FD + GH + + ++ L ++L+V V ++ P+ S++ERL ++
Sbjct: 3 KVGIY-PGTFDPVTNGHIDIIHRSSELFEKLIVAVAH-----SSAKNPMFSLDERLKMI 55
>pdb|3OTW|A Chain A, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|B Chain B, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|C Chain C, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|D Chain D, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|E Chain E, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|F Chain F, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
Length = 163
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 72 GCFDLMHYGHANALRQAKALGDELVVGVVSDEEIIANKGPPVLSMEERLALV 123
G FD + GH + + ++ L ++L+V V ++ P+ S++ERL ++
Sbjct: 15 GTFDPVTNGHIDIIHRSSELFEKLIVAVAH-----SSAKNPMFSLDERLKMI 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,499,079
Number of Sequences: 62578
Number of extensions: 507259
Number of successful extensions: 1181
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 38
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)