Query 014672
Match_columns 420
No_of_seqs 174 out of 480
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2641 Predicted seven transm 100.0 3.6E-63 7.8E-68 502.1 23.1 272 4-300 83-358 (386)
2 PF03619 Solute_trans_a: Organ 100.0 3.6E-62 7.7E-67 477.5 20.9 219 4-238 51-274 (274)
3 KOG2927 Membrane component of 71.0 3.3 7.3E-05 42.9 2.8 20 143-162 242-265 (372)
4 KOG3088 Secretory carrier memb 49.2 2.7E+02 0.0058 28.7 11.6 23 171-197 197-219 (313)
5 COG3399 Uncharacterized protei 30.5 4.2E+02 0.0091 24.1 9.0 42 150-196 101-142 (148)
6 PF04144 SCAMP: SCAMP family; 27.2 4.5E+02 0.0097 24.5 8.9 26 137-162 69-96 (177)
7 PRK01315 putative inner membra 26.5 3.7E+02 0.0081 27.9 8.9 84 106-189 11-129 (329)
8 PF04544 Herpes_UL20: Herpesvi 21.3 3E+02 0.0066 26.2 6.5 70 99-175 28-97 (179)
9 COG3080 FrdD Fumarate reductas 21.0 3.1E+02 0.0066 24.4 5.9 88 100-187 21-112 (118)
10 PRK03094 hypothetical protein; 18.7 75 0.0016 26.5 1.7 61 320-381 6-67 (80)
No 1
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-63 Score=502.07 Aligned_cols=272 Identities=38% Similarity=0.608 Sum_probs=242.1
Q ss_pred eeeeeccccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhcccCCCCccccccccCCccccCcccccc
Q 014672 4 FEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPMNYI 83 (420)
Q Consensus 4 I~S~LSL~~P~~aiy~d~iRdcYEAfvIYsFf~LLi~yLGGe~~~i~~L~~~~~~~~~~pll~~~~~~~~~~h~~P~~cc 83 (420)
+.||+||++|++++|++++||||||||||+|++||++|+|||++++..++++. ...+|++|+|||
T Consensus 83 ~~S~vsl~~p~~~~~~~~vr~~Yeaf~ly~F~sLl~~ylGGe~~~v~~l~~~~---------------~~~~~~~P~cc~ 147 (386)
T KOG2641|consen 83 VASFVSLLVPRVAFYLDTVRECYEAFVLYVFLSLLFHYLGGEQNIVTELEGRL---------------IRVNHTPPFCCF 147 (386)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHhccC---------------CcccCCCCceec
Confidence 46899999999999999999999999999999999999999999999987532 125799999988
Q ss_pred ccccc-cChHHHHHHHhhheehhhHHHHHHHHHHHHHHhhccccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHhHh
Q 014672 84 LKPWE-LGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKD 162 (420)
Q Consensus 84 lpp~~-lg~~fl~~~K~gVLQYvivKPl~ailaiIle~~GvY~eg~fs~~~~ylyl~iI~niSv~lALY~Lv~FY~atk~ 162 (420)
+||+. +++.++++||+||+||+|+||++++++++++++|+|++|++++ |+|+++++|+|++||||||.+||+++|+
T Consensus 148 ~~p~~~~~~~~lr~~K~~vlQ~~ivkp~~~lv~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~fy~~~~~ 224 (386)
T KOG2641|consen 148 FPPTVRLTPKFLRRCKQGVLQYPIVKPFLALVTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLFYTVTKD 224 (386)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88775 8999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred hhcccCCchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcch-hhHHHHHhhHHHHHHHHHHHHHHhhcccccccccc
Q 014672 163 ELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQG-LQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQM 241 (420)
Q Consensus 163 ~L~p~kPl~KFl~IK~VVFltfwQ~viIsiL~~~GvI~~~~~~~-~~~~~~iqd~LICiEM~i~AIlh~~AFp~~pY~~~ 241 (420)
+|.|++|++||+|+|+|||++||||++|++|...|.+++...+. ...++++||++||+||+++|++|+||||++||...
T Consensus 225 ~L~py~p~~KF~~vk~ivf~~~wQg~vi~~l~~~g~~~~~~~~~~~~~~~~iQnfiiciEM~i~ai~~~~af~~~~ya~~ 304 (386)
T KOG2641|consen 225 ELSPYQPVVKFLCVKLIVFLSFWQGIVLAILVKLGKIGPSYFDEVGTVAYGIQNFLICIEMLIAAIAHFYAFPAAPYALF 304 (386)
T ss_pred HhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHhCCcchhccc
Confidence 99999999999999999999999999999999999998755442 47899999999999999999999999999999986
Q ss_pred cccccCcccccccc-ccCCCCCcccccCcCCcccccCCC-CCCCCccccccccccceeEec
Q 014672 242 GECFSGDISVLGDY-SADCPLDPDEIRDSERPTKLRLPQ-PDVDIKSGMTIRESVRDVFVG 300 (420)
Q Consensus 242 ~~~~~~~~~~~~d~-~~~~~~d~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~es~~d~~~~ 300 (420)
.++.. |+ +.+.....+.++|+.+|+...... ++.+.+-....++|.||+..+
T Consensus 305 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 358 (386)
T KOG2641|consen 305 DERSC-------DYRSVDMFSISSSLWDSLMPNDLCSDAIRNFSPTYQDYTPQSDQDALSA 358 (386)
T ss_pred ccccc-------ccccccccccchHHHHhhcccCcccccccCCCcccccccccccCccccC
Confidence 55533 45 556666667888888888877653 344445468899999998777
No 2
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=3.6e-62 Score=477.48 Aligned_cols=219 Identities=39% Similarity=0.792 Sum_probs=206.9
Q ss_pred eeeeeccccCchhhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhcccCCCCccccccccCCccccCccc---
Q 014672 4 FEQFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPM--- 80 (420)
Q Consensus 4 I~S~LSL~~P~~aiy~d~iRdcYEAfvIYsFf~LLi~yLGGe~~~i~~L~~~~~~~~~~pll~~~~~~~~~~h~~P~--- 80 (420)
++||+|+++|++++|+|++|||||||++|+|+.||++|+|||+++++.+++ +++.+|+||+
T Consensus 51 i~S~~sl~~p~~~~~~~~ir~~Yea~~ly~F~~Ll~~y~gg~~~~~~~l~~----------------~~~~~~~~P~~~~ 114 (274)
T PF03619_consen 51 ICSLLSLLFPRAAIYLDFIRDCYEAFVLYSFFSLLLNYLGGEEALVEVLSG----------------KPPIKHPWPCCCC 114 (274)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhc----------------CCCCCCCCccccc
Confidence 679999999999999999999999999999999999999999999988863 3445689998
Q ss_pred cccccccccChHHHHHHHhhheehhhHHHHHHHHHHHHHHhhccccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 014672 81 NYILKPWELGRWFYQLVKIGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVT 160 (420)
Q Consensus 81 ~cclpp~~lg~~fl~~~K~gVLQYvivKPl~ailaiIle~~GvY~eg~fs~~~~ylyl~iI~niSv~lALY~Lv~FY~at 160 (420)
|||+|+++++++++++||+||+||+++||++++++++++++|+|++|+++++.+|+|+++++|+|+++|||||++||+++
T Consensus 115 ~~c~~~~~~~~~~l~~~k~~VlQ~~vvrpl~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~ 194 (274)
T PF03619_consen 115 CCCLPPWPMTKRFLRRCKWGVLQYVVVRPLLSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRAT 194 (274)
T ss_pred ccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCchhhhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcc--hhhHHHHHhhHHHHHHHHHHHHHHhhccccccc
Q 014672 161 KDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSLGLFKSPIAQ--GLQFKSSVQDFIICIEMAIASIVHLYVFPAKPY 238 (420)
Q Consensus 161 k~~L~p~kPl~KFl~IK~VVFltfwQ~viIsiL~~~GvI~~~~~~--~~~~~~~iqd~LICiEM~i~AIlh~~AFp~~pY 238 (420)
|++|+|+||++||+|+|+|||++|||+++|++|.+.|++++..+. ..++++++||+|+|+||+++|++|++||||+||
T Consensus 195 ~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ii~iL~~~g~i~~~~~~~~~~~~~~~i~~~LicvEM~i~ai~~~~af~~~~y 274 (274)
T PF03619_consen 195 KEELKPYRPLLKFLCIKLVVFLSFWQGFIISILASFGVIPCTPPWSSPEDIASGIQNFLICVEMFIFAILHRYAFPYSPY 274 (274)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999985432 238999999999999999999999999999998
No 3
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.96 E-value=3.3 Score=42.95 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=11.1
Q ss_pred HHHHHHHHHH----HHHHHHHhHh
Q 014672 143 NFSQSWALYC----LIQFYTVTKD 162 (420)
Q Consensus 143 niSv~lALY~----Lv~FY~atk~ 162 (420)
.++++|+||+ +++|-+.+.+
T Consensus 242 LF~I~~il~~g~~g~W~FPNL~eD 265 (372)
T KOG2927|consen 242 LFGITWILTGGKHGFWLFPNLTED 265 (372)
T ss_pred HHHHHHHHhCCCCceEeccchhhh
Confidence 3456666665 5555555544
No 4
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.21 E-value=2.7e+02 Score=28.70 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=16.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcC
Q 014672 171 AKFLTFKSIVFLTWWQGVAIALLYSLG 197 (420)
Q Consensus 171 ~KFl~IK~VVFltfwQ~viIsiL~~~G 197 (420)
.+|..| |++|.=-+++.++...|
T Consensus 197 f~F~~F----FF~y~~q~~~~v~qAvg 219 (313)
T KOG3088|consen 197 FNFGAF----FFTYFFQIVFCVFQAVG 219 (313)
T ss_pred hhhHHH----HHHHHHHHHHHHHHHHc
Confidence 345544 77777778888888877
No 5
>COG3399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.51 E-value=4.2e+02 Score=24.14 Aligned_cols=42 Identities=14% Similarity=0.270 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhHhhhcccCCchhhhHHHHHHHHHHHHHHHHHHHHHc
Q 014672 150 LYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAIALLYSL 196 (420)
Q Consensus 150 LY~Lv~FY~atk~~L~p~kPl~KFl~IK~VVFltfwQ~viIsiL~~~ 196 (420)
.+.|+.|-.+++-..+.-+|++||+-- +.|--+++|.+|.+.
T Consensus 101 if~Lv~Fsl~c~f~~kk~npvGkyIHp-----vvft~~~lIviLAK~ 142 (148)
T COG3399 101 IFLLVHFSLACVFMAKKTNPVGKYIHP-----VVFTHMLLIVILAKA 142 (148)
T ss_pred HHHHHHHHHHHHHHHhccCCccceehH-----HHHHHHHHHHHHHHH
Confidence 344777777777778888999998753 233446677777654
No 6
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=27.22 E-value=4.5e+02 Score=24.53 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHH-HH-HHHHHHHhHh
Q 014672 137 YMAVVLNFSQSWAL-YC-LIQFYTVTKD 162 (420)
Q Consensus 137 yl~iI~niSv~lAL-Y~-Lv~FY~atk~ 162 (420)
-+++++.+--+-+- ++ --..|+|.|+
T Consensus 69 ~lai~y~~~~~P~sf~~wyrplY~A~r~ 96 (177)
T PF04144_consen 69 GLAILYLLLGTPASFFCWYRPLYKAFRT 96 (177)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34555543333332 22 2335677764
No 7
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=26.48 E-value=3.7e+02 Score=27.86 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHhhccccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHhHhh---------hc-----------
Q 014672 106 IIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDE---------LA----------- 165 (420)
Q Consensus 106 ivKPl~ailaiIle~~GvY~eg~fs~~~~ylyl~iI~niSv~lALY~Lv~FY~atk~~---------L~----------- 165 (420)
+++|+..+++.++..+..--..-+....|..|...|..+.+.+=+-.+=++.++.+.. ++
T Consensus 11 i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~kyk~~~~ 90 (329)
T PRK01315 11 IMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRE 90 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhHHH
Confidence 5889888888887775322222234455656665555555544333333333333220 00
Q ss_pred -------------ccCCchhhhH--HHHHHHHHHHHHHH
Q 014672 166 -------------HIKPLAKFLT--FKSIVFLTWWQGVA 189 (420)
Q Consensus 166 -------------p~kPl~KFl~--IK~VVFltfwQ~vi 189 (420)
.+||+.-++- +++-||+.+++.+-
T Consensus 91 ~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~ 129 (329)
T PRK01315 91 RMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLD 129 (329)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 5678877766 69999999999764
No 8
>PF04544 Herpes_UL20: Herpesvirus egress protein UL20; InterPro: IPR007629 UL20 is predicted to be a transmembrane protein with multiple membrane spans. It is involved in the trans-cellular transport of enveloped virions, and is therefore important for viral egress. However, UL20 operates in different cellular compartments and different stages of egress in Suid herpesvirus 1 (Pseudorabies virus) and herpes simplex virus. This is thought to be due to differences in egress pathways between these two viruses [].; GO: 0019067 viral assembly, maturation, egress, and release
Probab=21.31 E-value=3e+02 Score=26.21 Aligned_cols=70 Identities=10% Similarity=0.103 Sum_probs=38.2
Q ss_pred hhheehhhHHHHHHHHHHHHHHhhccccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHhHhhhcccCCchhhhH
Q 014672 99 IGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLT 175 (420)
Q Consensus 99 ~gVLQYvivKPl~ailaiIle~~GvY~eg~fs~~~~ylyl~iI~niSv~lALY~Lv~FY~atk~~L~p~kPl~KFl~ 175 (420)
+..+-..++||+|.++-..-.. +.|+. .......++..+...-.+......|+..|.++=|.++..+++.
T Consensus 28 ~f~~Sal~lKPlCCl~f~~Yy~----~tg~~---~~~~~~~~~T~~yY~~l~l~~~~~Y~NIk~DrLPL~~~qq~~~ 97 (179)
T PF04544_consen 28 FFWISALVLKPLCCLIFLWYYR----CTGDS---RFFICGLAITAAYYMRLALMAFFLYRNIKRDRLPLSTPQQWIL 97 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 4556677899999876443211 12221 0111112222222222344577789999999988877666554
No 9
>COG3080 FrdD Fumarate reductase subunit D [Energy production and conversion]
Probab=20.98 E-value=3.1e+02 Score=24.36 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=55.1
Q ss_pred hheehhhHHHHHHHHHHHHHHhhccccCccc---ccccchhh-HHHHHHHHHHHHHHHHHHHHHhHhhhcccCCchhhhH
Q 014672 100 GIVQYMIIKSLTALLAVVLEAFNVYCEGEFK---WGCGYPYM-AVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLT 175 (420)
Q Consensus 100 gVLQYvivKPl~ailaiIle~~GvY~eg~fs---~~~~ylyl-~iI~niSv~lALY~Lv~FY~atk~~L~p~kPl~KFl~ 175 (420)
|-.=.+++-|++.++-=++-..|..+..+.+ ..+++-+| .++..+-+.++|||-.-=-+---.+|+=+.|..|+.|
T Consensus 21 Gg~vsAiiaPV~iLl~GillPlG~~d~~~lse~llaf~~s~Igkl~llvl~vlplw~a~HRihHgmhdlk~h~pag~~~f 100 (118)
T COG3080 21 GGMVSAIIAPVLILLVGILLPLGLFDADALSERLLAFAQSPIGKLFLLVLIVLPLWCALHRIHHGMHDLKIHVPAGKWVF 100 (118)
T ss_pred CceehHHHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeeeeee
Confidence 4555678899998888888889999877654 12223333 2334445566666643221111124666679999999
Q ss_pred HHHHHHHHHHHH
Q 014672 176 FKSIVFLTWWQG 187 (420)
Q Consensus 176 IK~VVFltfwQ~ 187 (420)
.-+-+..|-|-.
T Consensus 101 YGlA~i~sv~~~ 112 (118)
T COG3080 101 YGLAVILTVVAL 112 (118)
T ss_pred eHHHHHHHHHHH
Confidence 888777665544
No 10
>PRK03094 hypothetical protein; Provisional
Probab=18.67 E-value=75 Score=26.49 Aligned_cols=61 Identities=20% Similarity=0.340 Sum_probs=41.9
Q ss_pred hhhhhhhhhhhHHhhhhhhccccccccccCCCCccccCcccccccccCCCCCCccccC-Cccc
Q 014672 320 VEKGITKFNEKIHKISQNIKRHDKDRRKTKDDSCIASSHTRRVIRGIDDPLLNGSISD-SAPT 381 (420)
Q Consensus 320 ~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 381 (420)
||+|.+.|.+.+|+--=.+-..+....--.=|.|| .+.....+.|+.|....++|=| +|++
T Consensus 6 VE~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~V-itG~d~n~mgi~d~~t~~pVI~A~G~T 67 (80)
T PRK03094 6 VEQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCV-VTGQDSNVMGIADTSTKGSVITASGLT 67 (80)
T ss_pred eecCcHHHHHHHHHCCCEEEecCcccccCCcCEEE-EeCCCcceecccccccCCcEEEcCCCC
Confidence 78899988888887655554442211101134543 4777889999999999999877 8876
Done!