Query 014672
Match_columns 420
No_of_seqs 174 out of 480
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 15:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014672.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014672hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b5ea2 c.47.1.2 (A:142-239) P 36.7 4.8 0.00035 31.3 0.9 19 321-339 24-44 (98)
2 d1rzhh2 f.23.10.1 (H:11-35) Ph 15.3 87 0.0063 18.2 3.4 17 146-162 9-25 (26)
3 d1zl8a1 a.194.1.1 (A:4-53) Lin 13.8 37 0.0027 23.0 1.6 14 16-29 36-49 (50)
4 d1ijdb_ f.3.1.1 (B:) Light-har 13.7 30 0.0022 22.4 1.1 16 223-238 25-40 (40)
5 d1y74a1 a.194.1.1 (A:17-73) Li 12.3 44 0.0032 23.2 1.6 14 16-29 37-50 (57)
6 d1nkzb_ f.3.1.1 (B:) Light-har 11.1 34 0.0025 22.3 0.7 17 223-239 24-40 (41)
7 d1b0ua_ c.37.1.12 (A:) ATP-bin 8.3 88 0.0064 27.2 2.7 30 294-323 5-40 (258)
8 d1ji0a_ c.37.1.12 (A:) Branche 7.4 99 0.0072 26.4 2.5 23 294-316 9-32 (240)
9 d1kf6d_ f.21.2.2 (D:) Fumarate 7.0 5E+02 0.036 20.0 8.4 81 99-180 20-106 (119)
10 d1tbge_ a.137.3.1 (E:) Transdu 6.7 36 0.0026 24.5 -0.7 18 365-382 48-65 (68)
No 1
>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.68 E-value=4.8 Score=31.28 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=15.8
Q ss_pred hhhh--hhhhhhHHhhhhhhc
Q 014672 321 EKGI--TKFNEKIHKISQNIK 339 (420)
Q Consensus 321 e~g~--~~~~~~~~~~~~~~~ 339 (420)
..|+ ..+|||||++..+..
T Consensus 24 ~~Gv~d~~fNeTF~~~A~~l~ 44 (98)
T d2b5ea2 24 QSGKIDADFNATFYSMANKHF 44 (98)
T ss_dssp EEESCCHHHHHHHHHHHHHTT
T ss_pred eCCccccchhHHHHHHHHHhh
Confidence 6777 589999999988764
No 2
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.33 E-value=87 Score=18.20 Aligned_cols=17 Identities=18% Similarity=0.507 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhHh
Q 014672 146 QSWALYCLIQFYTVTKD 162 (420)
Q Consensus 146 v~lALY~Lv~FY~atk~ 162 (420)
..|+.++|+++|..+..
T Consensus 9 ~fw~ffalli~ylqten 25 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTEN 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccc
Confidence 46788899999987753
No 3
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=13.75 E-value=37 Score=23.00 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHH
Q 014672 16 SIDCEILRDCYESF 29 (420)
Q Consensus 16 aiy~d~iRdcYEAf 29 (420)
|-||+.+|++||-.
T Consensus 36 SdF~~avREVYe~v 49 (50)
T d1zl8a1 36 SEFFGAVREVYETV 49 (50)
T ss_dssp CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 45899999999953
No 4
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=13.68 E-value=30 Score=22.43 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=13.4
Q ss_pred HHHHHHHhhccccccc
Q 014672 223 AIASIVHLYVFPAKPY 238 (420)
Q Consensus 223 ~i~AIlh~~AFp~~pY 238 (420)
.++.++|.-||.++|+
T Consensus 25 ~iA~~AH~La~~~tPW 40 (40)
T d1ijdb_ 25 VIAAIAHFLAFTLTPW 40 (40)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 4677889999999986
No 5
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.26 E-value=44 Score=23.21 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHH
Q 014672 16 SIDCEILRDCYESF 29 (420)
Q Consensus 16 aiy~d~iRdcYEAf 29 (420)
|-||+.+|++||-.
T Consensus 37 SdF~~avREVYehv 50 (57)
T d1y74a1 37 SRFCSAIREVYEQL 50 (57)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56899999999964
No 6
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=11.07 E-value=34 Score=22.27 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=14.2
Q ss_pred HHHHHHHhhcccccccc
Q 014672 223 AIASIVHLYVFPAKPYE 239 (420)
Q Consensus 223 ~i~AIlh~~AFp~~pY~ 239 (420)
+++.++|.-||.++|+-
T Consensus 24 ~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 24 GLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHhCccc
Confidence 46778899999999974
No 7
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}
Probab=8.28 E-value=88 Score=27.18 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=21.3
Q ss_pred cceeEec-CccEEeeeeeeecccc-----ccchhhh
Q 014672 294 VRDVFVG-GSGYIVNDVKFTVNQA-----VEPVEKG 323 (420)
Q Consensus 294 ~~d~~~~-~g~~~v~dv~~t~~~~-----~~p~e~g 323 (420)
|+|+... |+..+|+||.|+|.+- ++|--.|
T Consensus 5 v~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsG 40 (258)
T d1b0ua_ 5 VIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSG 40 (258)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSS
T ss_pred EEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCc
Confidence 4555433 7788999999999874 5565555
No 8
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=7.35 E-value=99 Score=26.43 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=17.0
Q ss_pred cceeEec-CccEEeeeeeeecccc
Q 014672 294 VRDVFVG-GSGYIVNDVKFTVNQA 316 (420)
Q Consensus 294 ~~d~~~~-~g~~~v~dv~~t~~~~ 316 (420)
++|+-.. |+..+|+||.|+|++-
T Consensus 9 v~~l~k~yg~~~al~~vs~~i~~G 32 (240)
T d1ji0a_ 9 VQSLHVYYGAIHAIKGIDLKVPRG 32 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETT
T ss_pred EeeEEEEECCEEEEeeeeEEECCC
Confidence 3444433 7789999999999874
No 9
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=6.99 E-value=5e+02 Score=20.01 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=55.3
Q ss_pred hhheehhhHHHHHHHHHHHHHHhhccccCccccccc----chhh-HHHHHHHHHHHHHH-HHHHHHHhHhhhcccCCchh
Q 014672 99 IGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCG----YPYM-AVVLNFSQSWALYC-LIQFYTVTKDELAHIKPLAK 172 (420)
Q Consensus 99 ~gVLQYvivKPl~ailaiIle~~GvY~eg~fs~~~~----ylyl-~iI~niSv~lALY~-Lv~FY~atk~~L~p~kPl~K 172 (420)
.|=.=.+++-|++.++.-++-..|....+..+.... +-|+ .++....+.+.||| +=.+|+.+|| |+=+.|.+|
T Consensus 20 AGGm~~A~~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG~l~ll~~i~lplWh~~HRihHglHD-lkih~p~g~ 98 (119)
T d1kf6d_ 20 AGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHD-LKIHVPAGK 98 (119)
T ss_dssp HHHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccchh
Confidence 344556778899888888889999998777655433 3333 45555667777774 4566767665 555569999
Q ss_pred hhHHHHHH
Q 014672 173 FLTFKSIV 180 (420)
Q Consensus 173 Fl~IK~VV 180 (420)
.+|--+-.
T Consensus 99 ~~fYg~A~ 106 (119)
T d1kf6d_ 99 WVFYGLAA 106 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98874443
No 10
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.72 E-value=36 Score=24.53 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=11.4
Q ss_pred ccCCCCCCccccCCcccc
Q 014672 365 GIDDPLLNGSISDSAPTR 382 (420)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~ 382 (420)
.-+|||++|--++.-..+
T Consensus 48 ~~~DpLl~g~p~~~NPfk 65 (68)
T d1tbge_ 48 SGEDPLVKGIPEDKNPFK 65 (68)
T ss_dssp TTSCHHHHCCCGGGCTTC
T ss_pred CCCCCcccCCCCCCCCCC
Confidence 347888887655555544
Done!