Query 014674
Match_columns 420
No_of_seqs 154 out of 385
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:26:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.1 2.5E-10 5.3E-15 83.3 5.5 48 290-340 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.8 2E-08 4.3E-13 69.4 5.7 48 290-341 1-48 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 6.1E-08 1.3E-12 66.3 5.4 45 292-340 1-45 (45)
4 PLN03212 Transcription repress 98.6 1.1E-07 2.3E-12 92.5 6.9 56 287-345 22-77 (249)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.4 3.8E-07 8.2E-12 68.4 5.3 44 293-341 1-44 (60)
6 PLN03091 hypothetical protein; 98.3 1.1E-06 2.4E-11 91.2 6.3 54 288-344 12-65 (459)
7 KOG0048 Transcription factor, 98.0 1.6E-05 3.4E-10 75.4 7.1 53 290-345 9-61 (238)
8 PLN03212 Transcription repress 97.9 2.1E-05 4.5E-10 76.9 5.4 50 289-343 77-126 (249)
9 TIGR01557 myb_SHAQKYF myb-like 97.7 6E-05 1.3E-09 58.6 5.2 45 288-335 1-49 (57)
10 PLN03091 hypothetical protein; 97.7 5.2E-05 1.1E-09 79.2 5.8 48 290-342 67-114 (459)
11 KOG0457 Histone acetyltransfer 97.3 0.00045 9.8E-09 72.0 6.8 48 291-342 73-120 (438)
12 PF13837 Myb_DNA-bind_4: Myb/S 97.2 0.00027 5.8E-09 56.1 3.4 53 290-342 1-66 (90)
13 KOG0048 Transcription factor, 96.6 0.0031 6.8E-08 60.0 5.4 49 289-342 61-109 (238)
14 PF13325 MCRS_N: N-terminal re 96.6 0.0024 5.2E-08 60.9 4.2 63 288-350 71-136 (199)
15 KOG0051 RNA polymerase I termi 96.4 0.0047 1E-07 66.9 5.9 74 289-375 383-456 (607)
16 PF13873 Myb_DNA-bind_5: Myb/S 96.2 0.012 2.6E-07 46.3 5.6 52 291-342 3-71 (78)
17 KOG0049 Transcription factor, 95.8 0.01 2.2E-07 65.2 4.8 50 289-342 359-408 (939)
18 PF09111 SLIDE: SLIDE; InterP 95.8 0.0097 2.1E-07 52.4 3.6 54 289-342 48-112 (118)
19 KOG0049 Transcription factor, 95.6 0.0097 2.1E-07 65.4 3.5 53 286-342 408-460 (939)
20 COG5114 Histone acetyltransfer 95.2 0.081 1.7E-06 54.5 8.5 46 292-341 65-110 (432)
21 PLN03142 Probable chromatin-re 92.6 0.17 3.7E-06 58.1 5.6 55 289-343 925-987 (1033)
22 KOG4282 Transcription factor G 92.1 0.26 5.6E-06 49.0 5.4 54 290-343 54-116 (345)
23 COG5147 REB1 Myb superfamily p 91.1 0.12 2.5E-06 55.6 1.9 50 289-344 290-339 (512)
24 KOG1279 Chromatin remodeling f 90.9 0.3 6.5E-06 52.5 4.8 49 287-340 250-298 (506)
25 KOG0050 mRNA splicing protein 90.1 0.43 9.3E-06 51.8 5.1 51 290-344 7-57 (617)
26 COG5259 RSC8 RSC chromatin rem 88.5 0.54 1.2E-05 50.5 4.3 46 290-340 279-324 (531)
27 COG5147 REB1 Myb superfamily p 88.2 0.67 1.4E-05 50.0 4.8 79 287-382 17-96 (512)
28 KOG0051 RNA polymerase I termi 86.7 1.4 3.1E-05 48.5 6.3 57 288-348 434-516 (607)
29 PF08914 Myb_DNA-bind_2: Rap1 86.2 1.6 3.4E-05 35.1 4.8 50 290-342 2-59 (65)
30 PF12776 Myb_DNA-bind_3: Myb/S 83.0 1.9 4.1E-05 34.6 4.1 51 292-342 1-64 (96)
31 PF08074 CHDCT2: CHDCT2 (NUC03 82.2 0.97 2.1E-05 42.8 2.4 63 289-351 2-78 (173)
32 KOG2656 DNA methyltransferase 81.9 0.79 1.7E-05 48.3 1.8 52 291-343 131-188 (445)
33 PF04504 DUF573: Protein of un 76.7 5 0.00011 34.2 4.8 54 289-342 3-64 (98)
34 COG5118 BDP1 Transcription ini 72.2 6.2 0.00014 42.0 5.1 55 283-343 359-413 (507)
35 KOG0384 Chromodomain-helicase 64.4 3.6 7.8E-05 48.7 1.7 54 289-342 1132-1193(1373)
36 KOG0050 mRNA splicing protein 43.6 26 0.00057 38.7 3.9 46 290-341 59-104 (617)
37 PF09420 Nop16: Ribosome bioge 34.8 89 0.0019 28.6 5.4 52 288-340 112-163 (164)
38 smart00595 MADF subfamily of S 33.2 42 0.00092 26.6 2.7 25 312-341 29-53 (89)
39 cd01187 INT_SG4 INT_SG4, DNA b 29.5 1.4E+02 0.0029 28.0 5.8 81 289-373 98-186 (299)
40 cd02135 Arsenite_oxidase Nitro 24.9 81 0.0017 27.0 3.2 35 355-389 11-45 (160)
41 PF07128 DUF1380: Protein of u 23.1 89 0.0019 29.0 3.2 19 361-379 88-106 (139)
42 KOG3554 Histone deacetylase co 22.9 46 0.001 36.7 1.6 54 287-341 282-335 (693)
43 PF00984 UDPG_MGDP_dh: UDP-glu 22.0 25 0.00054 29.8 -0.5 44 50-100 21-64 (96)
44 PLN03162 golden-2 like transcr 21.6 2.2E+02 0.0047 30.9 6.0 54 286-341 233-291 (526)
45 PF10545 MADF_DNA_bdg: Alcohol 20.2 1E+02 0.0022 23.6 2.6 27 312-341 28-54 (85)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.06 E-value=2.5e-10 Score=83.26 Aligned_cols=48 Identities=29% Similarity=0.603 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhh
Q 014674 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 340 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 340 (420)
+.+||++|++.|+++|.+||.++|..|...++ .+||..+|+.+|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 46899999999999999999988999999886 5999999999999985
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.75 E-value=2e-08 Score=69.38 Aligned_cols=48 Identities=33% Similarity=0.637 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014674 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
+.+||.+|++.|+.+|.+||.++|..|...++ +||..+|+++|+++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 35799999999999999999779999998764 9999999999999875
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.64 E-value=6.1e-08 Score=66.26 Aligned_cols=45 Identities=38% Similarity=0.770 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhh
Q 014674 292 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 340 (420)
Q Consensus 292 ~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 340 (420)
+||.+|++.|+.++.+||.++|..|..... .||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~----~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP----GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC----CCCHHHHHHHHHHhC
Confidence 599999999999999999889999998764 699999999999874
No 4
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.57 E-value=1.1e-07 Score=92.46 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcccc
Q 014674 287 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 345 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 345 (420)
--++.+||+||++.|+..|++||..+|+.|..... .+||+.+|++||.|.++....
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g---~gRT~KQCReRW~N~L~P~I~ 77 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG---LLRCGKSCRLRWMNYLRPSVK 77 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh---cCCCcchHHHHHHHhhchhcc
Confidence 34577899999999999999999999999987643 489999999999999986653
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.43 E-value=3.8e-07 Score=68.43 Aligned_cols=44 Identities=39% Similarity=0.795 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014674 293 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 293 WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
||.+|++.|+.+|++||. +|+.|...+ .+||..+|++||++.++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l----~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHL----GNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHS----TTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHH----CcCCHHHHHHHHHHHCc
Confidence 999999999999999995 999998875 38999999999999554
No 6
>PLN03091 hypothetical protein; Provisional
Probab=98.28 E-value=1.1e-06 Score=91.21 Aligned_cols=54 Identities=26% Similarity=0.514 Sum_probs=47.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccc
Q 014674 288 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 344 (420)
Q Consensus 288 K~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 344 (420)
-++.+||.||++.|++.|++||.++|+.|.+... .+||+.+|++||.|.+....
T Consensus 12 lrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g---~gRT~KQCRERW~NyLdP~I 65 (459)
T PLN03091 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG---LQRCGKSCRLRWINYLRPDL 65 (459)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc---cCcCcchHhHHHHhccCCcc
Confidence 3466799999999999999999999999987643 48999999999999997654
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.99 E-value=1.6e-05 Score=75.44 Aligned_cols=53 Identities=28% Similarity=0.404 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcccc
Q 014674 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 345 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~ 345 (420)
+-+||+||++.|++-|++||.|+|..|.+.... .|+...|+-||-|.++..+-
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl---~R~GKSCRlRW~NyLrP~ik 61 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGL---RRCGKSCRLRWTNYLRPDLK 61 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCC---CccchHHHHHhhcccCCCcc
Confidence 589999999999999999999999999998752 99999999999999987654
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.85 E-value=2.1e-05 Score=76.86 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014674 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
.+.+||.||++.|++.+.+||. +|+.|.... .+||..++|.+|.++++..
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~L----pGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAGRI----PGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHhhc----CCCCHHHHHHHHHHHHhHH
Confidence 4568999999999999999996 999999854 5999999999999988754
No 9
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.72 E-value=6e-05 Score=58.57 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCh---HHHHHHhCCCCCCC-ChhhHHHH
Q 014674 288 KNQRMWTLSEVMKLIDGISQFGVGKW---TDIKRLLFSSSSHR-TPIDLRDK 335 (420)
Q Consensus 288 K~rr~WT~EEveaLv~GV~KyG~G~W---k~Il~~~f~if~~R-T~VDLKDK 335 (420)
|+|..||+||-..+++||+.||.|+| +.|+..+. ..| |..+++-.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~---~~~lT~~qV~SH 49 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV---VDGLTRDQVASH 49 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC---CCCCCHHHHHHH
Confidence 46888999999999999999999999 99998764 244 88888744
No 10
>PLN03091 hypothetical protein; Provisional
Probab=97.70 E-value=5.2e-05 Score=79.15 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014674 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
+.+||.||++.|++.+++||. +|+.|...+ .+||..++|.+|..++|.
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~L----PGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQL----PGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhc----CCCCHHHHHHHHHHHHHH
Confidence 568999999999999999997 999999764 599999999999998864
No 11
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.32 E-value=0.00045 Score=71.98 Aligned_cols=48 Identities=21% Similarity=0.498 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014674 291 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 291 r~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
--||.+|+-.|++|+++||.|||.+|.+... .||.-++|+.|.++.--
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~hIG----tKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIADHIG----TKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHHHHc----ccchHHHHHHHHHHHhc
Confidence 3499999999999999999999999999875 79999999999998853
No 12
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.25 E-value=0.00027 Score=56.05 Aligned_cols=53 Identities=34% Similarity=0.586 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHhh------cCC-----C--ChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014674 290 QRMWTLSEVMKLIDGISQ------FGV-----G--KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~K------yG~-----G--~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
|..||.+|+.+|++-+.. |+. + -|..|.......=-.||+.+|++||.||.+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~ 66 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK 66 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999998887 221 1 4999998752111289999999999999974
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.63 E-value=0.0031 Score=60.01 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014674 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
++..||+||++.|++...+||. +|+.|.... .+||--++|.-|..-+|.
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~L----PGRTDNeIKN~Wnt~lkk 109 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN-RWSLIAGRL----PGRTDNEVKNHWNTHLKK 109 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-HHHHHHhhC----CCcCHHHHHHHHHHHHHH
Confidence 3678999999999999999997 999999876 499999999999887753
No 14
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.57 E-value=0.0024 Score=60.87 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhCCCC-CCCChhhHHHHHHHhhhccccccccC
Q 014674 288 KNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRASYAHQKNK 350 (420)
Q Consensus 288 K~rr~WT~EEveaLv~GV~KyG--~G~Wk~Il~~~f~if-~~RT~VDLKDKWRNLlK~s~~p~~~r 350 (420)
..+-+||.+|++.|........ ...+.+|+..+.++| ..||+.+|.+.||.|.++.-++.|..
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ~v 136 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQSV 136 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhcccc
Confidence 3578999999999999887764 568999999998888 77999999999999998887766543
No 15
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.45 E-value=0.0047 Score=66.93 Aligned_cols=74 Identities=23% Similarity=0.443 Sum_probs=56.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCCHHHHH
Q 014674 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPVLC 368 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~p~~~r~e~erK~~~~~iP~~lL~ 368 (420)
.+-.||++|.+.|..-|.++|. .|+.|-+.. +|.+.+|+|+||+.++.+.. .++ ++=+...-+-||.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-----gr~P~~crd~wr~~~~~g~~---~~r----~~Ws~eEe~~Llk 449 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-----GRMPMDCRDRWRQYVKCGSK---RNR----GAWSIEEEEKLLK 449 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-----ccCcHHHHHHHHHhhccccc---ccc----CcchHHHHHHHHH
Confidence 4667999999999999999996 999999876 79999999999999998764 111 1222334555666
Q ss_pred HHHHhhh
Q 014674 369 RIRELAT 375 (420)
Q Consensus 369 RVreLA~ 375 (420)
-|.++-.
T Consensus 450 ~V~~~~~ 456 (607)
T KOG0051|consen 450 TVNEMIR 456 (607)
T ss_pred HHHHHHH
Confidence 6655444
No 16
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.19 E-value=0.012 Score=46.25 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHhhc-----CC-----------CChHHHHHHhCCCC-CCCChhhHHHHHHHhhhc
Q 014674 291 RMWTLSEVMKLIDGISQF-----GV-----------GKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 291 r~WT~EEveaLv~GV~Ky-----G~-----------G~Wk~Il~~~f~if-~~RT~VDLKDKWRNLlK~ 342 (420)
..||.+|.+.|++-|++| |. --|..|...+-... ..||..+||.+|.||...
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999998 31 25999999873332 489999999999999864
No 17
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.84 E-value=0.01 Score=65.24 Aligned_cols=50 Identities=22% Similarity=0.574 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014674 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
++-+||.+|+..|+.+|.+||.--|.+|...+ .+|+-.||+|+|-|.+..
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v----PnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV----PNRSDSQCRERYTNVLNR 408 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhc----CCccHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999775 499999999999988743
No 18
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=95.76 E-value=0.0097 Score=52.39 Aligned_cols=54 Identities=24% Similarity=0.507 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------CCC-CCCCChhhHHHHHHHhhhc
Q 014674 289 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~---G~Wk~Il~~~-------f~i-f~~RT~VDLKDKWRNLlK~ 342 (420)
..+.||.+|+..|+.-|.+||. |.|..|++.. |+. |..||+.+|+.+-.+|+++
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 4677999999999999999999 9999999873 343 3899999999999999975
No 19
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.59 E-value=0.0097 Score=65.40 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=44.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014674 286 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 286 rRK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
++-+.-.||..|++.|+..|++||.|+|.+|.... .+||..++..+-+.++..
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~L----p~~t~~q~~rrR~R~~~~ 460 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLL----PKKTSRQLRRRRLRLIAA 460 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHHHHc----cccchhHHHHHHHHHHHH
Confidence 34456679999999999999999999999999765 589998888777666643
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.23 E-value=0.081 Score=54.51 Aligned_cols=46 Identities=22% Similarity=0.559 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014674 292 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 292 ~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
-|+..|+-.|+++.+..|.|+|.+|.+... .|+.-++|+.|--+.-
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiG----sr~kee~k~HylK~y~ 110 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIG----SRAKEEIKSHYLKMYD 110 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHh----hhhhHHHHHHHHHHHh
Confidence 499999999999999999999999998764 7999999999977764
No 21
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=92.64 E-value=0.17 Score=58.15 Aligned_cols=55 Identities=20% Similarity=0.425 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-------CCC-CCCCChhhHHHHHHHhhhcc
Q 014674 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~-------f~i-f~~RT~VDLKDKWRNLlK~s 343 (420)
+.+.||.+|+..|+-.+.+||.|+|..|+... |+. |..||+.+|+.|-.+|++.-
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999998763 444 38999999999999999864
No 22
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=92.11 E-value=0.26 Score=48.97 Aligned_cols=54 Identities=24% Similarity=0.451 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhh----cCCCC-----hHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014674 290 QRMWTLSEVMKLIDGISQ----FGVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~K----yG~G~-----Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
...|+.+|+.+|++...+ |..|+ |..|.......=-.||+.+||.||.||.|..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 688999999999988764 34455 9999985422224899999999999999753
No 23
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=91.08 E-value=0.12 Score=55.60 Aligned_cols=50 Identities=34% Similarity=0.683 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccc
Q 014674 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 344 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 344 (420)
.+..||.+|+..|..-|.++|. .|+.|.... +|-+.+|.|+||+.++.+.
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-----~rmp~~crd~wr~~~~~g~ 339 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-----GRMPNDCRDRWRDYVKCGD 339 (512)
T ss_pred hhccCccccccccccccccccc-hhhHhhhhh-----ccCcHHHHHHHhhhccccC
Confidence 4567999999999999999995 999999764 7999999999999999873
No 24
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=90.93 E-value=0.3 Score=52.47 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=43.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhh
Q 014674 287 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 340 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 340 (420)
-..+..||.+|.-.|++||++||- .|.+|...-. .||.-||=.|+..|=
T Consensus 250 ~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg----~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 250 ESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG----TKSQEQCILKFLRLP 298 (506)
T ss_pred ccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC----CCCHHHHHHHHHhcC
Confidence 345788999999999999999997 9999998764 899999999998764
No 25
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=90.13 E-value=0.43 Score=51.76 Aligned_cols=51 Identities=22% Similarity=0.533 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccc
Q 014674 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 344 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~ 344 (420)
---|+..|++.|..+|.+||..+|+.|...+ ..-|+-+|+-+|--.+-.++
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~sll----~~kt~rqC~~rw~e~ldp~i 57 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIASLL----NRKTARQCKARWEEWLDPAI 57 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHHHH----hhcchhHHHHHHHHHhCHHH
Confidence 3469999999999999999999999999887 47899999999986665443
No 26
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=88.51 E-value=0.54 Score=50.47 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhh
Q 014674 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 340 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 340 (420)
-.+||.+|.-.|++||+.||. .|.+|..... ++|.-||=-|+-+|=
T Consensus 279 dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg----tKt~EqCIl~FL~LP 324 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGD-DWDKVARHVG----TKTKEQCILHFLQLP 324 (531)
T ss_pred cccccHHHHHHHHHHHHHhhh-hHHHHHHHhC----CCCHHHHHHHHHcCC
Confidence 458999999999999999997 9999998864 899999988887654
No 27
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=88.17 E-value=0.67 Score=49.99 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=60.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCCHHH
Q 014674 287 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPV 366 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s~~p~~~r~e~erK~~~~~iP~~l 366 (420)
.++.-.|+..|++.|..+|++||.-+|..|...|. .||+-|++-+|-|.... +..++. .-.+.
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~----~~~~kq~~~rw~~~lnp----~lk~~~---------~~~ee 79 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI----SSTGKQSSNRWNNHLNP----QLKKKN---------WSEEE 79 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc----ccccccccchhhhhhch----hccccc---------ccHHH
Confidence 34455899999999999999999999999998874 59999999999554432 222222 35677
Q ss_pred HHHHHHhhhhCCC-CCC
Q 014674 367 LCRIRELATIHPY-PRV 382 (420)
Q Consensus 367 L~RVreLA~~hpy-p~~ 382 (420)
..+++.|+..+++ |..
T Consensus 80 d~~li~l~~~~~~~wst 96 (512)
T COG5147 80 DEQLIDLDKELGTQWST 96 (512)
T ss_pred HHHHHHHHHhcCchhhh
Confidence 7788888888777 653
No 28
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=86.74 E-value=1.4 Score=48.47 Aligned_cols=57 Identities=28% Similarity=0.551 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHh-------hc------------------CCCChHHHHHHhCCCCCCCChhhHHHHHHHhhh-
Q 014674 288 KNQRMWTLSEVMKLIDGIS-------QF------------------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR- 341 (420)
Q Consensus 288 K~rr~WT~EEveaLv~GV~-------Ky------------------G~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK- 341 (420)
+.+.+||.||++.|++.|+ .| -.-+|..|-... ..|+.++|+-||-.|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~----~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEML----GTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhh----cCCCcchHHHHHHHHHhh
Confidence 5688999999999999996 44 123899999844 59999999999999996
Q ss_pred ccccccc
Q 014674 342 ASYAHQK 348 (420)
Q Consensus 342 ~s~~p~~ 348 (420)
.+....+
T Consensus 510 ~s~n~~~ 516 (607)
T KOG0051|consen 510 PSFNKRQ 516 (607)
T ss_pred HHhhccc
Confidence 4444333
No 29
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=86.23 E-value=1.6 Score=35.07 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHhhc---C---CCC--hHHHHHHhCCCCCCCChhhHHHHHHHhhhc
Q 014674 290 QRMWTLSEVMKLIDGISQF---G---VGK--WTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~Ky---G---~G~--Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~ 342 (420)
|.++|.+|+.+|++=|.++ | .|+ |+++...+. ..+|-.-++|+|+--++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~---t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP---TRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S---SS--SHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc
Confidence 6789999999999999654 3 343 888877663 489999999999766543
No 30
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=82.97 E-value=1.9 Score=34.59 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhhc-------CCC-----ChHHHHHHhCCCC-CCCChhhHHHHHHHhhhc
Q 014674 292 MWTLSEVMKLIDGISQF-------GVG-----KWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 292 ~WT~EEveaLv~GV~Ky-------G~G-----~Wk~Il~~~f~if-~~RT~VDLKDKWRNLlK~ 342 (420)
.||+++++.|++.+... +.| .|..|...+...+ ..-|..+||.||..|.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 49999999999988544 122 4888888764333 566889999999999873
No 31
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.19 E-value=0.97 Score=42.79 Aligned_cols=63 Identities=22% Similarity=0.463 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-CCCC--CCCC------hhhHHHHH-----HHhhhccccccccCC
Q 014674 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSS--SHRT------PIDLRDKW-----RNLLRASYAHQKNKG 351 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~-f~if--~~RT------~VDLKDKW-----RNLlK~s~~p~~~r~ 351 (420)
....|-..-+-.|+.||-+||-|+|.+|.++- |.++ .=++ ..+.|.|+ +-|..+-.++.|-++
T Consensus 2 ~~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkFLaRRfKLLEQaLvIEEqLrR 78 (173)
T PF08074_consen 2 EYEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKFLARRFKLLEQALVIEEQLRR 78 (173)
T ss_pred hhhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 45568888888999999999999999999984 4442 1122 34788776 333344444444444
No 32
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=81.89 E-value=0.79 Score=48.32 Aligned_cols=52 Identities=27% Similarity=0.421 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh-CCCC-CCCChhhHHHHH----HHhhhcc
Q 014674 291 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSS-SHRTPIDLRDKW----RNLLRAS 343 (420)
Q Consensus 291 r~WT~EEveaLv~GV~KyG~G~Wk~Il~~~-f~if-~~RT~VDLKDKW----RNLlK~s 343 (420)
..||.+|.+.|.+-.++|-. +|--|.+.| -..| .+||--|||||| |+|+++.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 56999999999999999998 999999987 2224 469999999999 5555543
No 33
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=76.66 E-value=5 Score=34.18 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCCC---hHHHHHHhCCCC-CCCChhhHHHHHHHhhhc
Q 014674 289 NQRMWTLSEVMKLIDGISQF----GVGK---WTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~Ky----G~G~---Wk~Il~~~f~if-~~RT~VDLKDKWRNLlK~ 342 (420)
-.|.||.+++-.|++|+-.| |... |..........+ .+=|..||.||-|.|.+.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999887 7543 444443322222 233778999999999963
No 34
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=72.23 E-value=6.2 Score=41.97 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=47.0
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhhcc
Q 014674 283 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 343 (420)
Q Consensus 283 ~~krRK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~s 343 (420)
.|+ ++..-+||.+|.+.+.+++..+|+ -+..|...|+ +|...|+|-||.+--|..
T Consensus 359 ~g~-~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP----~R~RkqIKaKfi~Eek~n 413 (507)
T COG5118 359 FGK-KKGALRWSKKEIEKFYKALSIWGT-DFSLISSLFP----NRERKQIKAKFIKEEKVN 413 (507)
T ss_pred ccC-CCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC----chhHHHHHHHHHHHhhhC
Confidence 444 567889999999999999999998 8999998764 899999999998877643
No 35
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=64.35 E-value=3.6 Score=48.73 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCC--------CCCChhhHHHHHHHhhhc
Q 014674 289 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSS--------SHRTPIDLRDKWRNLLRA 342 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if--------~~RT~VDLKDKWRNLlK~ 342 (420)
.---|..+++..|+-||-+||.|+|..|+.+-.--| .-=++++|.-+=.-|++.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls~ 1193 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLSL 1193 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHHH
Confidence 455699999999999999999999999998742112 133467777776666653
No 36
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=43.62 E-value=26 Score=38.67 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014674 290 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 290 rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
+--|+.+|++.|+.....+-. +|..|.... +||+.+|-.+|-||+-
T Consensus 59 ~tews~eederlLhlakl~p~-qwrtIa~i~-----gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPT-QWRTIADIM-----GRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCC-ccchHHHHh-----hhhHHHHHHHHHHHHH
Confidence 345999999999999988876 999999765 8999999999999984
No 37
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=34.82 E-value=89 Score=28.58 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhh
Q 014674 288 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 340 (420)
Q Consensus 288 K~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 340 (420)
+..++=|..|++.+..-|++||. .+..+..+---+.--.|.-+|+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56778999999999999999996 78888777542334679999998887654
No 38
>smart00595 MADF subfamily of SANT domain.
Probab=33.16 E-value=42 Score=26.60 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=20.8
Q ss_pred ChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014674 312 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 312 ~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
-|..|...... |..+|+-||+||-.
T Consensus 29 aW~~Ia~~l~~-----~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEELGL-----SVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHHCc-----CHHHHHHHHHHHHH
Confidence 59999887742 99999999999974
No 39
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=29.49 E-value=1.4e+02 Score=27.96 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC------ChHHHHHHhCCCCCCCChhhHHHHHHHhhhc-cccc-cccCCCCCcccccC
Q 014674 289 NQRMWTLSEVMKLIDGISQFGVG------KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA-SYAH-QKNKGEVDPKHAMR 360 (420)
Q Consensus 289 ~rr~WT~EEveaLv~GV~KyG~G------~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK~-s~~p-~~~r~e~erK~~~~ 360 (420)
..+.||.+|+.+|++++..+... .|..|...... ..-|..-=+.=+|..+-.. ..+. ...+. .+....
T Consensus 98 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~~i~ll~~-tGlR~~E~~~L~~~did~~~~~i~i~~~K~---~~~r~v 173 (299)
T cd01187 98 TPYIYTDEEIQRLLAAALQLPPTSGLRPWTYRTLFGLLAV-TGLRLGEALRLRLSDVDLDSGILTVRDSKF---GKSRLV 173 (299)
T ss_pred CCccCCHHHHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH-hCCcHHHHHhCcHHhcCCCCCeEEEEecCC---CCccEE
Confidence 34569999999999999877643 35555544211 1345555555555554321 1111 11111 123468
Q ss_pred CCCHHHHHHHHHh
Q 014674 361 SLPKPVLCRIREL 373 (420)
Q Consensus 361 ~iP~~lL~RVreL 373 (420)
|+|+++.+-+.+.
T Consensus 174 pl~~~l~~~l~~~ 186 (299)
T cd01187 174 PLHASTRAALRDY 186 (299)
T ss_pred eCCHHHHHHHHHH
Confidence 8999988877764
No 40
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=24.91 E-value=81 Score=26.96 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=28.4
Q ss_pred cccccCCCCHHHHHHHHHhhhhCCCCCCcCCCccC
Q 014674 355 PKHAMRSLPKPVLCRIRELATIHPYPRVPYSKKCN 389 (420)
Q Consensus 355 rK~~~~~iP~~lL~RVreLA~~hpyp~~~~~~~~~ 389 (420)
|+....++|.+.|.+|.+.|..-|-+.+.++-+|.
T Consensus 11 R~f~~~~v~~e~l~~il~aA~~APs~~n~Qpw~f~ 45 (160)
T cd02135 11 KKLTLPAPDREQLEQILEAAARAPDHGKLEPWRFI 45 (160)
T ss_pred hhcCCCCCCHHHHHHHHHHHHhCCCcCCccCeEEE
Confidence 44445679999999999999999988887776664
No 41
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=23.13 E-value=89 Score=29.03 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHhhhhCCC
Q 014674 361 SLPKPVLCRIRELATIHPY 379 (420)
Q Consensus 361 ~iP~~lL~RVreLA~~hpy 379 (420)
.+|.++|++|..+|+..=+
T Consensus 88 tVPA~lLe~vl~~A~~~L~ 106 (139)
T PF07128_consen 88 TVPADLLERVLRLAEQALW 106 (139)
T ss_pred cccHHHHHHHHHHHHHHHh
Confidence 4899999999999987654
No 42
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=22.91 E-value=46 Score=36.66 Aligned_cols=54 Identities=19% Similarity=0.414 Sum_probs=38.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014674 287 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 287 RK~rr~WT~EEveaLv~GV~KyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
|-.---||..|...+-++++|||. ...+|.++|-+--.-+.-|.-.=-|++--|
T Consensus 282 RDemEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyYYmwKttdR 335 (693)
T KOG3554|consen 282 RDEMEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYYYMWKTTDR 335 (693)
T ss_pred hhhhhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHHHHHhhhhH
Confidence 334567999999999999999998 889999887442234445554444444333
No 43
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=21.96 E-value=25 Score=29.80 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=27.4
Q ss_pred ccCcccccccccccchhhhhhhcccCCCCCCCCccCCCCCCCCCCCCCCCc
Q 014674 50 AANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLGNSSSESHSPGASGSN 100 (420)
Q Consensus 50 ~~~~~s~a~~~~~~d~~~a~~~~~l~~gp~~~s~l~n~sses~spg~sgs~ 100 (420)
-.|+|+..|+.+-+| +.+.+.-+...|..+.++- -++|||+|+-
T Consensus 21 f~Nel~~lce~~giD--~~~V~~~~~~d~ri~~~~~-----~pg~g~GG~C 64 (96)
T PF00984_consen 21 FANELARLCEKLGID--VYEVIEAANTDPRIGPHYL-----RPGPGFGGSC 64 (96)
T ss_dssp HHHHHHHHHHHHTSB--HHHHHHHHHTSTTTTSSS------S-SSS--SSC
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHccCcccccccC-----CCCCCCCCcc
Confidence 468899999998655 4555566666788763222 4567888874
No 44
>PLN03162 golden-2 like transcription factor; Provisional
Probab=21.58 E-value=2.2e+02 Score=30.91 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=40.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCC--ChHHHHHHhCCCCCCCChhhHH---HHHHHhhh
Q 014674 286 RRKNQRMWTLSEVMKLIDGISQFGVG--KWTDIKRLLFSSSSHRTPIDLR---DKWRNLLR 341 (420)
Q Consensus 286 rRK~rr~WT~EEveaLv~GV~KyG~G--~Wk~Il~~~f~if~~RT~VDLK---DKWRNLlK 341 (420)
++|.|..||.+=-+.++++|++.|.- .=+.|++... ..+=|.-++| .|||..+|
T Consensus 233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMn--V~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMG--VQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcC--CCCcCHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999953 3466777653 3455655655 68888775
No 45
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=20.18 E-value=1e+02 Score=23.58 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=20.2
Q ss_pred ChHHHHHHhCCCCCCCChhhHHHHHHHhhh
Q 014674 312 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 341 (420)
Q Consensus 312 ~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 341 (420)
-|..|...... .-+..+|+.+|++|..
T Consensus 28 aw~~Ia~~l~~---~~~~~~~~~~w~~Lr~ 54 (85)
T PF10545_consen 28 AWQEIARELGK---EFSVDDCKKRWKNLRD 54 (85)
T ss_pred HHHHHHHHHcc---chhHHHHHHHHHHHHH
Confidence 48888877642 3457789999999885
Done!