BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014676
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y94|A Chain A, Crystal Structure Of The G16sN17TP19AS20AN67D VARIANT Of
Bovine Seminal Ribonuclease
pdb|1Y94|B Chain B, Crystal Structure Of The G16sN17TP19AS20AN67D VARIANT Of
Bovine Seminal Ribonuclease
Length = 124
Score = 31.6 bits (70), Expect = 0.96, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 244 ESSYQRVPRCVYVSTEL--HEYKGCGGKPANPKH 275
E+ + P C Y +T++ H CGGKP+ P H
Sbjct: 86 ETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVH 119
>pdb|1BSR|A Chain A, Bovine Seminal Ribonuclease Structure At 1.9 Angstroms
Resolution
pdb|1BSR|B Chain B, Bovine Seminal Ribonuclease Structure At 1.9 Angstroms
Resolution
pdb|11BA|A Chain A, Binding Of A Substrate Analogue To A Domain Swapping
Protein In The Complex Of Bovine Seminal Ribonuclease
With Uridylyl-2',5'-Adenosine
pdb|11BA|B Chain B, Binding Of A Substrate Analogue To A Domain Swapping
Protein In The Complex Of Bovine Seminal Ribonuclease
With Uridylyl-2',5'-Adenosine
pdb|11BG|A Chain A, A Potential Allosteric Subsite Generated By Domain
Swapping In Bovine Seminal Ribonuclease
pdb|11BG|B Chain B, A Potential Allosteric Subsite Generated By Domain
Swapping In Bovine Seminal Ribonuclease
pdb|1R3M|A Chain A, Crystal Structure Of The Dimeric Unswapped Form Of Bovine
Seminal Ribonuclease
pdb|1R3M|B Chain B, Crystal Structure Of The Dimeric Unswapped Form Of Bovine
Seminal Ribonuclease
pdb|1R5C|A Chain A, X-Ray Structure Of The Complex Of Bovine Seminal
Ribonuclease Swapping Dimer With D(Cpa)
pdb|1R5C|B Chain B, X-Ray Structure Of The Complex Of Bovine Seminal
Ribonuclease Swapping Dimer With D(Cpa)
pdb|1R5D|A Chain A, X-Ray Structure Of Bovine Seminal Ribonuclease Swapping
Dimer From A New Crystal Form
pdb|1R5D|B Chain B, X-Ray Structure Of Bovine Seminal Ribonuclease Swapping
Dimer From A New Crystal Form
pdb|3DJO|A Chain A, Bovine Seminal Ribonuclease Uridine 2' Phosphate Complex
pdb|3DJO|B Chain B, Bovine Seminal Ribonuclease Uridine 2' Phosphate Complex
pdb|3DJP|A Chain A, Bovine Seminal Ribonuclease- Uridine 3' Phosphate Complex
pdb|3DJP|B Chain B, Bovine Seminal Ribonuclease- Uridine 3' Phosphate Complex
pdb|3DJQ|A Chain A, Bovine Seminal Ribonuclease- Uridine 5' Diphosphate
Complex
pdb|3DJQ|B Chain B, Bovine Seminal Ribonuclease- Uridine 5' Diphosphate
Complex
pdb|3DJV|A Chain A, Bovine Seminal Ribonuclease- Cytidine 3' Phosphate Complex
pdb|3DJV|B Chain B, Bovine Seminal Ribonuclease- Cytidine 3' Phosphate Complex
pdb|3DJX|A Chain A, Bovine Seminal Ribonuclease- Cytidine 5' Phosphate Complex
pdb|3DJX|B Chain B, Bovine Seminal Ribonuclease- Cytidine 5' Phosphate Complex
Length = 124
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 244 ESSYQRVPRCVYVSTEL--HEYKGCGGKPANPKH 275
E+ + P C Y +T++ H CGGKP+ P H
Sbjct: 86 ETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVH 119
>pdb|1Y92|A Chain A, Crystal Structure Of The P19aN67D VARIANT OF BOVINE
Seminal Ribonuclease
pdb|1Y92|B Chain B, Crystal Structure Of The P19aN67D VARIANT OF BOVINE
Seminal Ribonuclease
Length = 124
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 244 ESSYQRVPRCVYVSTEL--HEYKGCGGKPANPKH 275
E+ + P C Y +T++ H CGGKP+ P H
Sbjct: 86 ETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVH 119
>pdb|1QWQ|A Chain A, Solution Structure Of The Monomeric N67d Mutant Of Bovine
Seminal Ribonuclease
pdb|2LFJ|A Chain A, Solution Structure Of The Monomeric Derivative Of Bs-Rnase
Length = 124
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 244 ESSYQRVPRCVYVSTEL--HEYKGCGGKPANPKH 275
E+ + P C Y +T++ H CGGKP+ P H
Sbjct: 86 ETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVH 119
>pdb|1N1X|A Chain A, Crystal Structure Analysis Of The Monomeric [s-
Carboxyamidomethyl-Cys31, S-Carboxyamidomethyl-Cys32]
Bovine Seminal Ribonuclease
pdb|1N3Z|A Chain A, Crystal Structure Of The [s-Carboxyamidomethyl-Cys31, S-
Carboxyamidomethyl-Cys32] Monomeric Derivative Of The
Bovine Seminal Ribonuclease In The Liganded State
pdb|1TQ9|A Chain A, Non-Covalent Swapped Dimer Of Bovine Seminal Ribonuclease
In Complex With
2'-Deoxycytidine-2'-Deoxyadenosine-3',5'- Monophosphate
pdb|1TQ9|B Chain B, Non-Covalent Swapped Dimer Of Bovine Seminal Ribonuclease
In Complex With
2'-Deoxycytidine-2'-Deoxyadenosine-3',5'- Monophosphate
Length = 124
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 244 ESSYQRVPRCVYVSTEL--HEYKGCGGKPANPKH 275
E+ + P C Y +T++ H CGGKP+ P H
Sbjct: 86 ETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVH 119
>pdb|3BCM|A Chain A, Crystal Structure Of The Unswapped Form Of P19aL28QN67D
Bs-Rnase
pdb|3BCM|B Chain B, Crystal Structure Of The Unswapped Form Of P19aL28QN67D
Bs-Rnase
pdb|3BCO|A Chain A, Crystal Structure Of The Swapped Form Of P19aL28QN67D BS-
Rnase
pdb|3BCO|B Chain B, Crystal Structure Of The Swapped Form Of P19aL28QN67D BS-
Rnase
Length = 124
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 244 ESSYQRVPRCVYVSTEL--HEYKGCGGKPANPKH 275
E+ + P C Y +T++ H CGGKP+ P H
Sbjct: 86 ETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVH 119
>pdb|3BCP|A Chain A, Crystal Structure Of The Swapped Non Covalent Form Of
P19aL28QN67D BS-Rnase
pdb|3BCP|B Chain B, Crystal Structure Of The Swapped Non Covalent Form Of
P19aL28QN67D BS-Rnase
pdb|3BCP|C Chain C, Crystal Structure Of The Swapped Non Covalent Form Of
P19aL28QN67D BS-Rnase
pdb|3BCP|D Chain D, Crystal Structure Of The Swapped Non Covalent Form Of
P19aL28QN67D BS-Rnase
Length = 124
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 244 ESSYQRVPRCVYVSTEL--HEYKGCGGKPANPKH 275
E+ + P C Y +T++ H CGGKP+ P H
Sbjct: 86 ETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVH 119
>pdb|1B6V|A Chain A, Crystal Structure Of A Hybrid Between Ribonuclease A And
Bovine Seminal Ribonuclease
pdb|1B6V|B Chain B, Crystal Structure Of A Hybrid Between Ribonuclease A And
Bovine Seminal Ribonuclease
Length = 124
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 244 ESSYQRVPRCVYVSTELHEY--KGCGGKPANPKH 275
E+ + P C Y +T+ +++ CGGKP P H
Sbjct: 86 ETGSSKYPNCAYKTTQANKHIIVACGGKPYVPVH 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,672,102
Number of Sequences: 62578
Number of extensions: 464251
Number of successful extensions: 1286
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1285
Number of HSP's gapped (non-prelim): 9
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)