Query 014676
Match_columns 420
No_of_seqs 56 out of 58
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 15:51:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014676.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014676hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gy6a_ d.17.4.2 (A:) Nuclear 34.1 6.9 0.0005 30.7 1.5 45 198-242 37-93 (125)
2 d2pi2a1 b.40.4.3 (A:44-171) Re 19.1 35 0.0026 26.4 3.1 18 220-237 73-90 (128)
3 d1wnaa1 d.319.1.1 (A:1-127) Hy 18.7 41 0.003 27.5 3.4 62 291-365 31-100 (127)
4 d1jkga_ d.17.4.2 (A:) NTF2-rel 18.4 16 0.0012 29.0 0.9 46 197-242 43-104 (139)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 18.1 43 0.0031 29.5 3.7 33 158-190 5-37 (248)
6 d2h2ja2 b.85.7.3 (A:50-310) Ru 17.5 53 0.0038 26.6 4.0 16 334-349 6-21 (261)
7 d1zo2a1 d.17.4.2 (A:10-126) Nu 17.5 18 0.0013 27.5 0.9 45 198-242 33-89 (117)
8 d1ciya1 b.18.1.3 (A:462-609) d 14.9 27 0.002 28.3 1.4 15 36-50 30-45 (148)
9 d1gy7a_ d.17.4.2 (A:) Nuclear 14.6 22 0.0016 27.3 0.7 45 197-241 33-90 (121)
10 d1u0ma2 c.95.1.2 (A:202-349) P 14.1 29 0.0021 27.6 1.3 18 354-371 116-133 (148)
No 1
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.08 E-value=6.9 Score=30.65 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=32.7
Q ss_pred hhh--hhhhchhhhhhccccCCCcc----cc------cCcCCcEEEEEEEEEecccc
Q 014676 198 MIW--NCVWGRRGLLGFVKKYPDTE----LR------GAIDGQYVKVTGVVTCGSIP 242 (420)
Q Consensus 198 ~iw--N~~~~~~~i~rfl~k~Pd~~----lr------~a~dGq~VKItG~VtcG~~P 242 (420)
++| |.+.++.+|..++.++|-.+ +. +...+=+|.|+|.|++++.|
T Consensus 37 l~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Q~~~~~~ili~V~G~~~~~~~~ 93 (125)
T d1gy6a_ 37 LTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDP 93 (125)
T ss_dssp EEETTEEEESHHHHHHHHHHCSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEETTSC
T ss_pred EEECCccccCHHHHHHHHHcCCCcccEEEEeEEEEEEcCCCCEEEEEEEEEEECCCC
Confidence 456 55666889999999999654 22 24557789999999887654
No 2
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.12 E-value=35 Score=26.41 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=14.7
Q ss_pred ccccCcCCcEEEEEEEEE
Q 014676 220 ELRGAIDGQYVKVTGVVT 237 (420)
Q Consensus 220 ~lr~a~dGq~VKItG~Vt 237 (420)
+-..+++|.||||.|.+.
T Consensus 73 ~~~~i~~g~yVrV~G~lk 90 (128)
T d2pi2a1 73 ENTVVPPETYVKVAGHLR 90 (128)
T ss_dssp -CCCCCTTCEEEEEEEEE
T ss_pred ccccccCCCEEEEEEEEE
Confidence 445789999999999976
No 3
>d1wnaa1 d.319.1.1 (A:1-127) Hypothetical protein TTHA1528 (TT1805) {Thermus thermophilus [TaxId: 274]}
Probab=18.70 E-value=41 Score=27.49 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=39.1
Q ss_pred ceEEEecCC-----ceeEEEEecCCCeeeeeeeeceEEeecCCC---CCCCHHHHHHHhhcCCCCccceeEEecceeeeC
Q 014676 291 DFYISDFQS-----GLRALVKAGYGAKVAPFVKPATVVNITKGN---RDLSPSFLRWLADRNLSSDDRIMRLKEGYIKEG 362 (420)
Q Consensus 291 DFYIsD~~s-----G~RAlVKaG~G~kVtp~V~e~~vv~~~~~~---~dlS~~f~~WL~erNLSsd~r~mRlkEGyIkEG 362 (420)
-.||+|.|. +.-++|..|.. +.+..|. .|+.. ..+=.||.+||.+|+.- +.+|-.|-.|
T Consensus 31 ~~lITDwQdqR~qArya~lv~~Gk~----~ll~~dA---FGPafp~G~~ALaELv~wl~~~G~r------~~~EaVv~p~ 97 (127)
T d1wnaa1 31 VYLITDWQDKRDQARYALLLHTGKK----DLLVPDA---FGPAFPGGEEALSELVGLLLAQGAR------RFYEAVVSPG 97 (127)
T ss_dssp EEEEEECCSSTTSCCEEEEEECSSC----EEEEEEE---ESTTSTTHHHHHHHHHHHHHHTTCC------EEEEEEECGG
T ss_pred EEEEecccchhhhhhhHHHhhcCCc----ccccccc---cCCCCccHHHHHHHHHHHHHHcCCc------hhhhhhcCHH
Confidence 369999875 45567777663 3444443 23322 12345899999999862 5678777766
Q ss_pred CEE
Q 014676 363 STV 365 (420)
Q Consensus 363 stv 365 (420)
|-.
T Consensus 98 e~~ 100 (127)
T d1wnaa1 98 EMT 100 (127)
T ss_dssp GHH
T ss_pred HHH
Confidence 643
No 4
>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.43 E-value=16 Score=28.96 Aligned_cols=46 Identities=24% Similarity=0.420 Sum_probs=32.8
Q ss_pred hhhh--hhhhchhhhhhccccCCCcccc--c-----Cc-------CCcEEEEEEEEEecccc
Q 014676 197 GMIW--NCVWGRRGLLGFVKKYPDTELR--G-----AI-------DGQYVKVTGVVTCGSIP 242 (420)
Q Consensus 197 ~~iw--N~~~~~~~i~rfl~k~Pd~~lr--~-----a~-------dGq~VKItG~VtcG~~P 242 (420)
.|+| |.+.++..|..++..+|.++.. + .. .|=+|.|+|.|+..+.|
T Consensus 43 ~l~~~g~~~~G~~~I~~~l~~lp~~~~~i~~~D~q~~~~~~~~~~~~ilI~V~G~v~~~~~~ 104 (139)
T d1jkga_ 43 TLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNK 104 (139)
T ss_dssp EEEETTEEEESHHHHHHHHHHSCCEEEEEEEEEEEECCTTTSTTCCEEEEEEEEEEEETTSC
T ss_pred eEEECCeeccCHHHHHHHHHhCCCceeEEEEEEEEEcCcccccCCCeEEEEEEEEEEcCCCC
Confidence 3567 6677788999999999987542 1 11 13489999999887654
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=18.11 E-value=43 Score=29.49 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhheeeeeehhHHHHHHHHHH
Q 014676 158 WVVMVVVAMGVMVGAFLMVAVKKAVVLVAVAAV 190 (420)
Q Consensus 158 w~vi~l~~~g~~~G~f~l~av~~~~ll~~~~~~ 190 (420)
|+++.++..=.+-++++|.+-.+|.++++.+++
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~ 37 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTLIL 37 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 555555555556667777777777765544433
No 6
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=17.51 E-value=53 Score=26.56 Aligned_cols=16 Identities=19% Similarity=0.698 Sum_probs=13.8
Q ss_pred HHHHHHHhhcCCCCcc
Q 014676 334 PSFLRWLADRNLSSDD 349 (420)
Q Consensus 334 ~~f~~WL~erNLSsd~ 349 (420)
..|.+|+.++|.-.++
T Consensus 6 ~~~~~W~~~~g~~~~~ 21 (261)
T d2h2ja2 6 QTFWKWLQEEGVITAK 21 (261)
T ss_dssp HHHHHHHHTTTSSCSS
T ss_pred HHHHHHHHHCCCccCC
Confidence 3689999999998876
No 7
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}
Probab=17.50 E-value=18 Score=27.54 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=31.3
Q ss_pred hhh--hhhhchhhhhhccccCCCcc----cc------cCcCCcEEEEEEEEEecccc
Q 014676 198 MIW--NCVWGRRGLLGFVKKYPDTE----LR------GAIDGQYVKVTGVVTCGSIP 242 (420)
Q Consensus 198 ~iw--N~~~~~~~i~rfl~k~Pd~~----lr------~a~dGq~VKItG~VtcG~~P 242 (420)
+.| +.+.++.+|..++.++|-.. +. +.-+|=+|-|+|.+++.+.|
T Consensus 33 l~~~g~~~~G~~~I~~~l~~l~~~~~~~~i~~~D~Qp~~~~~ili~V~G~~~~~~~~ 89 (117)
T d1zo2a1 33 LTWEDTQFQGQANIVNKFNSLNFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQ 89 (117)
T ss_dssp EEETTEEEESHHHHHHHHHHHCCSCEEEEEEEEEEEECTBSSEEEEEEEEEEETTCC
T ss_pred EEECCCcccCHHHHHHHHHhCCCccceEEEeeEEEEEcCCCCEEEEEEEEEEeCCCC
Confidence 446 45566888999999888442 22 24456789999999987654
No 8
>d1ciya1 b.18.1.3 (A:462-609) delta-Endotoxin, C-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=14.87 E-value=27 Score=28.29 Aligned_cols=15 Identities=40% Similarity=0.922 Sum_probs=11.2
Q ss_pred c-ccCCcccccccccc
Q 014676 36 P-YTGGDVKKSGELGK 50 (420)
Q Consensus 36 P-YTGGDikkSGELGk 50 (420)
| |||||+-|.-..|.
T Consensus 30 PG~TGGdlv~l~~~g~ 45 (148)
T d1ciya1 30 PGFTGGDILRRTSPGQ 45 (148)
T ss_dssp CSSSSSCEEEESSSEE
T ss_pred CCCCCccEEEecCCCc
Confidence 5 99999998655443
No 9
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.65 E-value=22 Score=27.32 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=31.3
Q ss_pred hhhh--hhhhchhhhhhccccCCCcc----ccc------CcCC-cEEEEEEEEEeccc
Q 014676 197 GMIW--NCVWGRRGLLGFVKKYPDTE----LRG------AIDG-QYVKVTGVVTCGSI 241 (420)
Q Consensus 197 ~~iw--N~~~~~~~i~rfl~k~Pd~~----lr~------a~dG-q~VKItG~VtcG~~ 241 (420)
.++| |.+.++..|..+|.++|-.+ +.+ ..+| =+|-|+|.+++++.
T Consensus 33 ~l~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Qp~~~~~~ili~V~G~~~~~~~ 90 (121)
T d1gy7a_ 33 MLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEE 90 (121)
T ss_dssp EEEETTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCEEEEEEEEEEETTC
T ss_pred EEEECCeEecCHHHHHHHHHhCCCcccEEEEeeEeeEEccCCCeEEEEEEEEEEECCC
Confidence 3567 46667899999999999432 221 2233 47899999998764
No 10
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}
Probab=14.12 E-value=29 Score=27.61 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.2
Q ss_pred EecceeeeCCEEEEEEEE
Q 014676 354 LKEGYIKEGSTVSVMGVV 371 (420)
Q Consensus 354 lkEGyIkEGstvSVmGvv 371 (420)
++||.|++||+|-.+|..
T Consensus 116 ~~~~~~~~Gd~ill~gfG 133 (148)
T d1u0ma2 116 FDEGGVEEGARGLLAGFG 133 (148)
T ss_dssp HHSCCCCSSCCCEEEEEE
T ss_pred HHcCCCCCCCEEEEEEEc
Confidence 468999999999999854
Done!