Query 014677
Match_columns 420
No_of_seqs 228 out of 809
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:27:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00148 potassium transporter 100.0 5E-128 1E-132 1035.8 40.4 415 1-420 353-785 (785)
2 PLN00149 potassium transporter 100.0 7E-128 1E-132 1035.3 41.7 410 1-420 357-779 (779)
3 PLN00150 potassium ion transpo 100.0 3E-127 6E-132 1029.0 41.4 410 1-420 370-779 (779)
4 PLN00151 potassium transporter 100.0 5E-127 1E-131 1027.8 42.0 416 1-420 430-852 (852)
5 TIGR00794 kup potassium uptake 100.0 2E-109 3E-114 887.9 39.0 364 1-420 324-688 (688)
6 PRK10745 trkD potassium transp 100.0 1.4E-94 3.1E-99 763.0 33.4 322 1-420 298-622 (622)
7 PF02705 K_trans: K+ potassium 100.0 3.1E-86 6.7E-91 694.0 27.4 248 1-250 287-534 (534)
8 COG3158 Kup K+ transporter [In 100.0 1.6E-85 3.6E-90 679.9 32.1 324 1-419 303-626 (627)
9 PF14362 DUF4407: Domain of un 81.3 14 0.0003 36.9 10.5 87 65-151 13-112 (301)
10 PF06570 DUF1129: Protein of u 79.4 5.9 0.00013 37.6 6.8 21 125-145 179-199 (206)
11 COG4059 MtrE Tetrahydromethano 59.4 8.1 0.00018 37.8 2.9 40 113-152 243-288 (304)
12 KOG3643 GABA receptor [Signal 53.6 8.3 0.00018 41.1 2.0 88 21-112 226-323 (459)
13 PF05297 Herpes_LMP1: Herpesvi 52.4 4.7 0.0001 40.9 0.0 60 89-151 126-190 (381)
14 PRK05151 electron transport co 49.3 53 0.0011 31.4 6.6 48 45-92 14-63 (193)
15 PF08733 PalH: PalH/RIM21; In 47.6 1E+02 0.0022 32.0 8.8 135 7-150 168-321 (348)
16 PF02508 Rnf-Nqr: Rnf-Nqr subu 46.6 82 0.0018 29.9 7.4 48 45-92 14-63 (190)
17 PF02660 G3P_acyltransf: Glyce 44.3 2.2E+02 0.0048 26.5 9.9 83 58-150 91-175 (178)
18 TIGR01940 nqrE NADH:ubiquinone 44.1 81 0.0018 30.4 7.0 48 45-92 13-62 (200)
19 PRK12456 Na(+)-translocating N 40.8 84 0.0018 30.2 6.5 48 45-92 15-64 (199)
20 PF05545 FixQ: Cbb3-type cytoc 39.0 28 0.0006 25.6 2.3 28 135-162 20-47 (49)
21 PRK01061 Na(+)-translocating N 38.8 1E+02 0.0022 30.7 6.8 46 45-90 21-68 (244)
22 COG2179 Predicted hydrolase of 37.1 6.9 0.00015 36.7 -1.4 65 350-415 49-117 (175)
23 PRK14417 membrane protein; Pro 37.1 2.1E+02 0.0046 28.2 8.7 18 59-76 101-118 (232)
24 PF02361 CbiQ: Cobalt transpor 35.7 3.5E+02 0.0075 24.8 9.8 20 43-62 10-29 (224)
25 PRK13108 prolipoprotein diacyl 35.3 1.3E+02 0.0029 32.4 7.7 19 68-86 24-42 (460)
26 PRK02830 Na(+)-translocating N 33.3 1.3E+02 0.0029 29.0 6.6 48 45-92 14-63 (202)
27 PF11712 Vma12: Endoplasmic re 32.5 1.5E+02 0.0032 26.5 6.4 53 71-123 82-139 (142)
28 PF11086 DUF2878: Protein of u 32.3 2.1E+02 0.0046 26.1 7.5 83 66-152 19-101 (152)
29 TIGR02454 CbiQ_TIGR cobalt ABC 31.6 1.9E+02 0.0042 26.5 7.3 44 126-169 81-124 (198)
30 TIGR01943 rnfA electron transp 31.4 1.6E+02 0.0035 28.1 6.8 46 46-91 14-61 (190)
31 PF01790 LGT: Prolipoprotein d 29.2 4.3E+02 0.0093 25.8 9.6 28 119-146 80-109 (256)
32 PRK14419 membrane protein; Pro 28.3 5.3E+02 0.011 24.6 10.2 24 58-81 99-122 (199)
33 PF06155 DUF971: Protein of un 28.3 33 0.00071 28.1 1.4 15 389-403 25-39 (89)
34 PRK12437 prolipoprotein diacyl 28.2 2.8E+02 0.0061 27.5 8.2 23 68-90 20-42 (269)
35 cd05900 Ig_Aggrecan Immunoglob 27.1 79 0.0017 27.2 3.6 27 227-253 76-102 (112)
36 PF01699 Na_Ca_ex: Sodium/calc 26.5 71 0.0015 27.2 3.2 59 31-94 22-82 (140)
37 PF12811 BaxI_1: Bax inhibitor 26.3 3.6E+02 0.0078 27.2 8.5 57 79-138 151-220 (274)
38 PRK14414 membrane protein; Pro 26.0 6.2E+02 0.013 24.6 10.0 82 59-150 103-189 (210)
39 PRK00701 manganese transport p 25.7 2.6E+02 0.0057 29.8 7.9 33 41-73 104-136 (439)
40 TIGR00145 FTR1 family protein. 24.7 3.5E+02 0.0075 27.3 8.2 31 129-159 79-109 (283)
41 TIGR00911 2A0308 L-type amino 24.4 2E+02 0.0044 30.5 6.9 11 16-26 345-355 (501)
42 PF13937 DUF4212: Domain of un 24.3 3.7E+02 0.008 22.2 6.8 36 113-149 30-70 (81)
43 PRK14397 membrane protein; Pro 23.4 7.1E+02 0.015 24.4 9.9 83 57-150 97-181 (222)
44 PRK12324 phosphoribose diphosp 22.6 7E+02 0.015 25.2 9.9 60 89-149 130-189 (295)
45 PF01284 MARVEL: Membrane-asso 22.6 3.4E+02 0.0075 23.0 6.8 23 66-88 40-62 (144)
46 PRK14402 membrane protein; Pro 22.4 6.9E+02 0.015 23.9 10.3 22 59-80 100-121 (198)
47 PF11674 DUF3270: Protein of u 22.3 3.5E+02 0.0077 22.9 6.4 34 74-108 44-77 (90)
48 PRK15120 lipopolysaccharide AB 21.1 3.2E+02 0.0069 27.9 7.3 29 118-146 321-351 (366)
49 PF06123 CreD: Inner membrane 20.9 4E+02 0.0086 28.6 8.1 53 58-111 343-395 (430)
50 PF10112 Halogen_Hydrol: 5-bro 20.8 1.7E+02 0.0037 27.3 4.9 21 124-144 31-51 (199)
51 PF03649 UPF0014: Uncharacteri 20.6 5E+02 0.011 25.7 8.2 64 66-129 25-95 (250)
52 TIGR00930 2a30 K-Cl cotranspor 20.6 1.5E+03 0.031 26.9 14.5 34 100-142 501-534 (953)
53 PF10131 PTPS_related: 6-pyruv 20.3 5E+02 0.011 29.1 9.0 59 42-108 4-62 (616)
54 COG5393 Predicted membrane pro 20.3 3.2E+02 0.0069 24.5 5.9 39 71-109 55-94 (131)
55 TIGR00947 2A73 probable bicarb 20.2 5.5E+02 0.012 27.0 9.0 29 117-145 211-240 (425)
No 1
>PLN00148 potassium transporter; Provisional
Probab=100.00 E-value=4.6e-128 Score=1035.80 Aligned_cols=415 Identities=43% Similarity=0.797 Sum_probs=354.8
Q ss_pred CcccchhhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHH
Q 014677 1 MIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLV 80 (420)
Q Consensus 1 IIASQA~ISg~FSl~~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~i 80 (420)
||||||||||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++
T Consensus 353 IIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV~~vM~i 432 (785)
T PLN00148 353 IVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGLACMTVMFI 432 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhhhheeeHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCC
Q 014677 81 SSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKIS 160 (420)
Q Consensus 81 TT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~ 160 (420)
||+|+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++++++|++||||++++++++.++++|
T Consensus 433 TT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~~~ 512 (785)
T PLN00148 433 TTFLMALVIIFVWQKSIILAALFLLFFGFIEGVYLSAALMKVPQGGWVPLVLSAIFMSIMYIWHYGTRKKYNFDLHNKVS 512 (785)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCcCCCcccceEEEEeecCCCCchhHHHHHhhhcCccceEEEEEEEEEeeccccCCCceEEEEEecCCCccEE
Q 014677 161 MDFLLDLGSTLGTVRVPGIGLLYNELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMF 240 (420)
Q Consensus 161 ~~~~~~~~~~~~~~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~y 240 (420)
++++.++.++.++.||||+|+|||++.+|+|++|.||++|||++||++||||||++|+|+||++|||++++++++++++|
T Consensus 513 ~~~~~~l~~~~~~~RVpG~~vf~t~~~~gvP~~f~h~~~~~~~lHe~~Vfv~ik~~~vP~V~~~eR~~v~~i~~~~yr~~ 592 (785)
T PLN00148 513 LKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMY 592 (785)
T ss_pred HHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEE
Confidence 99998888888889999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEEeeecccccChhHHHHHHHHHHHHHHHHhhhhhHhh---h---cccCCccccccc-cCCCCCCCCCCC-----cc
Q 014677 241 RCVTRYGYKDVRKEDHHVFEQLLVASLEKFLRKEAQDLALE---R---NLLESDLDSVSV-ASRDPEASGSYG-----TE 308 (420)
Q Consensus 241 r~v~ryGy~d~~~~~~~~f~~~lv~~L~~fI~~e~~~~~~~---~---~~~~~~~~~~~~-~~~~~~~~~~~~-----~~ 308 (420)
||++||||||..++ ++|||++|+++|++|||+|+.+...+ + +++ ++++.... ...... ...++ +.
T Consensus 593 r~vvryGy~d~~~~-~~dFe~~Lv~~L~~FIr~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 669 (785)
T PLN00148 593 RCIVRYGYKDIQRD-DGDFENMLVQSIAEFIQMEAEEPQSSASESSSNDGR-MAVISTRDVQSSSLL-MVSEQELADIDD 669 (785)
T ss_pred EEEEEEccCccccc-chHHHHHHHHHHHHHHHhhhhccccccccccccccc-ccccccccccccccc-cccccccccccc
Confidence 99999999999877 99999999999999999988421000 0 111 11110000 000000 00000 00
Q ss_pred ccccccccccc--cccCCCCCCccccCCCCCcccccC----CCccHHHHHHHHHHHHhCCcEEEeeecEEEEcCCCChhH
Q 014677 309 ELKIPLMHERR--FDESGTSASEETTSALPSSVMALD----EDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLK 382 (420)
Q Consensus 309 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~El~~L~~A~eagVvYIlG~~~v~ar~~Ss~~K 382 (420)
........+.+ .+.++.+.+. ..++++.++..+ .+++++||+++|++|+|+||+||+||++||||++|||+|
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~El~~L~~A~eaGVvYIlG~s~v~Ar~~Ss~~K 747 (785)
T PLN00148 670 SIQSSKSLTLQSLQSAYEDENPG--QSRRRRVRFQLPENPGMDPSVREELMDLIEAKEAGVAYIMGHSYVKARRSSSFLK 747 (785)
T ss_pred ccccccccccccccccccccccc--cccccceeecccccccccchHHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHH
Confidence 00000000000 0111111111 113455555332 357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCcccccCCCCCeeEeeeEEEC
Q 014677 383 KLVINYFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 420 (420)
Q Consensus 383 k~vin~~Y~fLRkN~R~~~~~L~IPh~~LlEVGmvy~v 420 (420)
|++||++|+|||||||+|.++|+|||++||||||+|||
T Consensus 748 KivIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGM~Y~V 785 (785)
T PLN00148 748 KLAIDIGYSFLRKNCRGPAVALNIPHISLIEVGMIYYV 785 (785)
T ss_pred HHHHHHHHHHHHHhccCcccccCCChHHeEEcceEEEC
Confidence 99999999999999999999999999999999999997
No 2
>PLN00149 potassium transporter; Provisional
Probab=100.00 E-value=6.9e-128 Score=1035.34 Aligned_cols=410 Identities=45% Similarity=0.805 Sum_probs=353.1
Q ss_pred CcccchhhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHH
Q 014677 1 MIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLV 80 (420)
Q Consensus 1 IIASQA~ISg~FSl~~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~i 80 (420)
||||||||||+|||++||++||||||+||+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++
T Consensus 357 IIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~i 436 (779)
T PLN00149 357 VVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLAVITVMLV 436 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhhhehHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCC
Q 014677 81 SSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKIS 160 (420)
Q Consensus 81 TT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~ 160 (420)
||+|+++||+.+|+||++++++|+++|+++|++|||||+.||+||||+||++|++++++|++||||++++++++.++++|
T Consensus 437 TT~L~~lv~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~v~ 516 (779)
T PLN00149 437 TTCLMSLVIVLCWHKSVLLAICFIFFFGTIEALYFSASLIKFLEGAWVPIALSFIFLLVMYVWHYGTLKRYEFDVQNKVS 516 (779)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCcCCCcccceEEEEeecCCCCchhHHHHHhhhcCccceEEEEEEEEEeeccccCCCceEEEEEecCCCccEE
Q 014677 161 MDFLLDLGSTLGTVRVPGIGLLYNELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMF 240 (420)
Q Consensus 161 ~~~~~~~~~~~~~~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~y 240 (420)
++++.++.++.++.||||+|+|||++.+|+|++|.||++|||++||++||||||++|+|+||++|||++++++++++++|
T Consensus 517 ~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~h~~~~~~~lhe~~Vfv~ik~~~vP~V~~~eR~~v~~i~~~~~~~~ 596 (779)
T PLN00149 517 INWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGRIGPKEYRLY 596 (779)
T ss_pred HHHHHHhccCCCCcccCcEEEEEcCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEE
Confidence 99998888888889999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEEEeeecccccChhHHHHHHHHHHHHHHHHhhhhhHhhh------cccCCccccccc-cCCCCCC-CCCC-Cccccc
Q 014677 241 RCVTRYGYKDVRKEDHHVFEQLLVASLEKFLRKEAQDLALER------NLLESDLDSVSV-ASRDPEA-SGSY-GTEELK 311 (420)
Q Consensus 241 r~v~ryGy~d~~~~~~~~f~~~lv~~L~~fI~~e~~~~~~~~------~~~~~~~~~~~~-~~~~~~~-~~~~-~~~~~~ 311 (420)
||++||||||..++ ++|||++|+++|++|||+|+.+...++ +++ +++++... ....... +++. ...+.+
T Consensus 597 r~vvryGy~d~~~d-~~dFE~~Lve~L~~FI~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (779)
T PLN00149 597 RCIVRYGYRDVHKD-DMEFEKDLVCSIAEFIRSEKPEPNGAPENEEGEDER-MTVVGTCSTHLEGIQLREDDSDKQEPAG 674 (779)
T ss_pred EEEEEEeecccccc-chHHHHHHHHHHHHHHHhhhhccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 99999999999887 899999999999999999874211000 111 11110000 0000000 0000 000000
Q ss_pred cccccccccccCCCCCCccccCCCCCccccc----CCCccHHHHHHHHHHHHhCCcEEEeeecEEEEcCCCChhHHHHHH
Q 014677 312 IPLMHERRFDESGTSASEETTSALPSSVMAL----DEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVIN 387 (420)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~El~~L~~A~eagVvYIlG~~~v~ar~~Ss~~Kk~vin 387 (420)
.+..+.. . +.+. +++.++.++.. +.+++++||+++|++|+|+||+||+||++||||++|||+||++||
T Consensus 675 ~~~~~~~---~-~~~~----~~~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~s~v~Ar~~Ss~~KK~vIn 746 (779)
T PLN00149 675 TSELREI---R-SPPV----SRPKKRVRFVVPESPKIDRGAREELQELMEAREAGMAYILGHSYVRAKQGSSMMKKLVIN 746 (779)
T ss_pred ccccccc---c-Cccc----cCcccceeeccccccccchhHHHHHHHHHHHHHcCcEEEecCceEEEcCCCcHHHHHHHH
Confidence 0000000 0 0000 01224455533 235789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCcccccCCCCCeeEeeeEEEC
Q 014677 388 YFYAFLRRNCRAGAANMSVPHMNILQVGMTYMV 420 (420)
Q Consensus 388 ~~Y~fLRkN~R~~~~~L~IPh~~LlEVGmvy~v 420 (420)
|+|+|||||||+|.++|+|||++||||||+|||
T Consensus 747 ~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~v 779 (779)
T PLN00149 747 YGYDFLRRNSRGPRYALSVPHASTLEVGMVYHV 779 (779)
T ss_pred HHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 999999999999999999999999999999997
No 3
>PLN00150 potassium ion transporter family protein; Provisional
Probab=100.00 E-value=2.9e-127 Score=1029.02 Aligned_cols=410 Identities=46% Similarity=0.816 Sum_probs=351.9
Q ss_pred CcccchhhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHH
Q 014677 1 MIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLV 80 (420)
Q Consensus 1 IIASQA~ISg~FSl~~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~i 80 (420)
||||||||||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++
T Consensus 370 IIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~i 449 (779)
T PLN00150 370 MIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGIAVVGVMII 449 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhhheehhhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCC
Q 014677 81 SSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKIS 160 (420)
Q Consensus 81 TT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~ 160 (420)
||+|+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++++++|++||||++++++++.++++|
T Consensus 450 TT~L~~~v~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~v~ 529 (779)
T PLN00150 450 TTCLMTLVMIIIWRKHILLALLFFTVFAIIEGIYFSAVLFKVTQGGWVPLVIAAVFGTVMYTWHYGTRKRYLYEMQHKVS 529 (779)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCcCCCcccceEEEEeecCCCCchhHHHHHhhhcCccceEEEEEEEEEeeccccCCCceEEEEEecCCCccEE
Q 014677 161 MDFLLDLGSTLGTVRVPGIGLLYNELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMF 240 (420)
Q Consensus 161 ~~~~~~~~~~~~~~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~y 240 (420)
+++|.++.++.++.||||+|+|||++++|+|++|.||++|||++||++|||||+++|+|+||++|||++++++++++++|
T Consensus 530 ~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~h~v~~~~~lhe~~Vfl~i~~~~vP~V~~~eR~~v~~i~~~~~r~~ 609 (779)
T PLN00150 530 VGWLLGLGPSLGLVRVPGIGLMYTDLAHGVPPLFSHFITNLPAIHSTVVFVCIKYLPVNTVPQDERFLIRRIGPRAYSMY 609 (779)
T ss_pred HHHHHhhcccCCCcccCcEEEEEeCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEE
Confidence 99998888888889999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred EEEEEEeeecccccChhHHHHHHHHHHHHHHHHhhhhhHhhhcccCCccccccccCCCCCCCCCCCcccccccccccccc
Q 014677 241 RCVTRYGYKDVRKEDHHVFEQLLVASLEKFLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERRF 320 (420)
Q Consensus 241 r~v~ryGy~d~~~~~~~~f~~~lv~~L~~fI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (420)
||++||||||..++ ++|||++|+++|++|||+|+.+...+++. +++..+.+....+. ++.....+.+.+.......
T Consensus 610 r~vvryGy~d~~~d-~~dFE~~LvesL~~FIr~e~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 685 (779)
T PLN00150 610 RCAARYGYTDLEKK-DDNFEQLLIASLERFIEIESFREQSDLES--MAASWTPEELMGEG-NSVGSGLFTQYDQSDINFA 685 (779)
T ss_pred EEEEEEccCcCccc-chHHHHHHHHHHHHHHHhhhhcccccccc--cccccccccccccC-Ccccccccccccccccccc
Confidence 99999999999887 89999999999999999987422111111 11111000000000 0000000000000000000
Q ss_pred ccCCCCCCccccCCCCCcccccCCCccHHHHHHHHHHHHhCCcEEEeeecEEEEcCCCChhHHHHHHHHHHHHhhhccCC
Q 014677 321 DESGTSASEETTSALPSSVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAG 400 (420)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~El~~L~~A~eagVvYIlG~~~v~ar~~Ss~~Kk~vin~~Y~fLRkN~R~~ 400 (420)
+.++.+.+ ..++.++ .+.+++++||+++|++|+|+||+||+||++||||++|||+||++||++|+|||||||+|
T Consensus 686 ~~~~~~~~-----~~~~~~~-~~~~~~v~eEl~~L~~A~eaGVvYIlG~~~v~Ak~~Ss~~KK~vIN~~Y~FLRkNcR~~ 759 (779)
T PLN00150 686 TSQEWKRP-----SSQEDSV-SGHSSDTQDEVAFLNKCKEAGVVYILGNNDVKARKDSGFFKKVIINYIYTFLRRISRDS 759 (779)
T ss_pred cccccccc-----ccccccc-ccccccHHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCC
Confidence 00000100 1122222 23457899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEeeeEEEC
Q 014677 401 AANMSVPHMNILQVGMTYMV 420 (420)
Q Consensus 401 ~~~L~IPh~~LlEVGmvy~v 420 (420)
.++|+|||++||||||+|||
T Consensus 760 ~~~L~IPh~~LleVGmvY~V 779 (779)
T PLN00150 760 EVVLNIPHECLLKVGMVYYV 779 (779)
T ss_pred ccccCCChHHeEEeceEEEC
Confidence 99999999999999999997
No 4
>PLN00151 potassium transporter; Provisional
Probab=100.00 E-value=4.6e-127 Score=1027.84 Aligned_cols=416 Identities=69% Similarity=1.148 Sum_probs=352.5
Q ss_pred CcccchhhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHH
Q 014677 1 MIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLV 80 (420)
Q Consensus 1 IIASQA~ISg~FSl~~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~i 80 (420)
||||||||||+|||++||++||||||+||+|||++++||||||+|||+||++|++||++||||++||||||+||++||++
T Consensus 430 IIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~i 509 (852)
T PLN00151 430 LIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMV 509 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCC
Q 014677 81 SSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKIS 160 (420)
Q Consensus 81 TT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~ 160 (420)
||+|+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++++++|++||||++++++++.++++|
T Consensus 510 TT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM~~W~yG~~~~~~~~~~~~vs 589 (852)
T PLN00151 510 STILVTLVMLLIWQTNIFLVLCFPVVFLSVELVFFSSVLSSVGDGGWIPLVFASVFLCIMYIWNYGSKLKYQSEVRQKLS 589 (852)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCcCCCcccceEEEEeecCCCCchhHHHHHhhhcCccceEEEEEEEEEeeccccCCCceEEEEEecCCCccEE
Q 014677 161 MDFLLDLGSTLGTVRVPGIGLLYNELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMF 240 (420)
Q Consensus 161 ~~~~~~~~~~~~~~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~y 240 (420)
++++.++.++.++.||||+|+|||++++|+|++|.||++|||++||++||||||++|+|+||++|||++++++++++|+|
T Consensus 590 ~~~~~~L~~~~~~~RVpGiglf~t~~~~gvP~~f~h~i~~~~alHe~~Vfv~ik~~~vP~V~~~eR~lv~ri~~~~~~~y 669 (852)
T PLN00151 590 MDLMRELGSNLGTIRAPGIGLLYNELVKGIPAIFGHFLTTLPAIHSTIIFVCIKYVPVPVVPQEERFLFRRVCPKDYHMF 669 (852)
T ss_pred HHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEcCCCCCCEE
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeecccccChhHHHHHHHHHHHHHHHHhhhhhHhhhcccCCcccccc-ccCCCCCCCCCCCccccccccccccc
Q 014677 241 RCVTRYGYKDVRKEDHHVFEQLLVASLEKFLRKEAQDLALERNLLESDLDSVS-VASRDPEASGSYGTEELKIPLMHERR 319 (420)
Q Consensus 241 r~v~ryGy~d~~~~~~~~f~~~lv~~L~~fI~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (420)
||++||||||..+++++|||++|+++|++|||+|+.+...+++..+...++.+ ....... .+..+....+.+......
T Consensus 670 r~vvrYGY~D~~~~~~~dFe~~Lv~~l~~fi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 748 (852)
T PLN00151 670 RCIARYGYKDVRKENHQAFEQLLIESLEKFIRREAQERALESDGNDDTDDEDSVTSSRVLI-APNGSVYSLGVPLLADYR 748 (852)
T ss_pred EEEEEEeecccccccchHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccc-CCCccccccccccccccc
Confidence 99999999999863389999999999999999988532111100000000000 0000000 000000000000000000
Q ss_pred cccCCCCCC--ccc---cCC-CCCcccccCCCccHHHHHHHHHHHHhCCcEEEeeecEEEEcCCCChhHHHHHHHHHHHH
Q 014677 320 FDESGTSAS--EET---TSA-LPSSVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFL 393 (420)
Q Consensus 320 ~~~~~~~~~--~~~---~~~-~~~~~~~~~~~~~v~~El~~L~~A~eagVvYIlG~~~v~ar~~Ss~~Kk~vin~~Y~fL 393 (420)
. .+.+.. ..+ ++. .+++++ .+.++++++|+++|++|+|+||+||+||++||||++|+|+||++||++|+||
T Consensus 749 -~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~El~~l~~a~e~Gv~yilG~~~v~a~~~S~~~Kk~~in~~Y~fL 825 (852)
T PLN00151 749 -L-TSKPIPEASTSEEVSPVLPSSSMS-SDEDQSLEYELSFIREAKESGVVYLLGHGDVRARKNSWFIKKLVINYFYAFL 825 (852)
T ss_pred -c-cccccccccccccccccccccccc-cccCccHHHHHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHH
Confidence 0 000000 000 000 122333 2335789999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcccccCCCCCeeEeeeEEEC
Q 014677 394 RRNCRAGAANMSVPHMNILQVGMTYMV 420 (420)
Q Consensus 394 RkN~R~~~~~L~IPh~~LlEVGmvy~v 420 (420)
|||||+|.++|+|||++||||||+|+|
T Consensus 826 RkN~R~~~~~L~iP~~~lleVGm~Y~v 852 (852)
T PLN00151 826 RKNCRRGIANLSVPHSNIMQVGMTYMV 852 (852)
T ss_pred HHhccCcccccCCChHHeEEeceEEEC
Confidence 999999999999999999999999997
No 5
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=100.00 E-value=1.5e-109 Score=887.89 Aligned_cols=364 Identities=38% Similarity=0.718 Sum_probs=337.9
Q ss_pred CcccchhhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHH
Q 014677 1 MIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLV 80 (420)
Q Consensus 1 IIASQA~ISg~FSl~~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~i 80 (420)
||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||||++||+|||+||++||+|
T Consensus 324 IIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGiaVt~tM~i 403 (688)
T TIGR00794 324 IIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGIAVTGTFLV 403 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhhhhhhhhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCC
Q 014677 81 SSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKIS 160 (420)
Q Consensus 81 TT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~ 160 (420)
||+|++++|+.+|+||++++++|+++|+++|++||+||+.||+||||+||++|++++++|++|+||++++++++.++++|
T Consensus 404 TT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~ 483 (688)
T TIGR00794 404 TTCLMTVVMTIVWKWNIYFVALFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSVMTTWRYGRFRKLRRDHEHRVS 483 (688)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCcCC-CcccceEEEEeecCCCCchhHHHHHhhhcCccceEEEEEEEEEeeccccCCCceEEEEEecCCCccE
Q 014677 161 MDFLLDLGSTLG-TVRVPGIGLLYNELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHM 239 (420)
Q Consensus 161 ~~~~~~~~~~~~-~~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~ 239 (420)
+++|++.+.+.. ..|+||+|+|+|++++++|++|.||++|||++||++||+||+++|+|+||++|||+++++++++ |+
T Consensus 484 ~~~~~~~l~~~~~l~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lhe~~vfltv~~~~~P~Vp~~eR~~v~~l~~~~-g~ 562 (688)
T TIGR00794 484 ISALIASLQPKPGLVRVPGIGIYYSNLVNGIPAVFGHLVTKFPSIHEVFIFLSLRTLDAPTVHNEERVQISQVGPTE-GM 562 (688)
T ss_pred HHHHHHHHhhcCCCcccCCeEEEeeCCccCCCHHHHHHHHhCCccceEEEEEEEEECCCCcCCcceEEEEEEEcCCC-CE
Confidence 999998654444 4899999999999999999999999999999999999999999999999999999999999754 89
Q ss_pred EEEEEEEeeecccccChhHHHHHHHHHHHHHHHHhhhhhHhhhcccCCccccccccCCCCCCCCCCCccccccccccccc
Q 014677 240 FRCVTRYGYKDVRKEDHHVFEQLLVASLEKFLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERR 319 (420)
Q Consensus 240 yr~v~ryGy~d~~~~~~~~f~~~lv~~L~~fI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (420)
|||++||||||+|+. +++|+++++++|.+||+++..+...+.+ . .+
T Consensus 563 ~rv~~~yGf~e~~~~-~~~l~~~ii~~L~~fi~~~~~~~~~~~~-------------------~------~~-------- 608 (688)
T TIGR00794 563 YRCVIRYGFMDTPNE-PKELAAHIVNSIVEFVEHECGFNLNNLE-------------------E------LS-------- 608 (688)
T ss_pred EEEEEEecCCcCCCc-HHHHHHHHHHHHHHHHHHHhhhcccccc-------------------c------cc--------
Confidence 999999999999998 8899999999999999986531000000 0 00
Q ss_pred cccCCCCCCccccCCCCCcccccCCCccHHHHHHHHHHHHhCCcEEEeeecEEEEcCCCChhHHHHHHHHHHHHhhhccC
Q 014677 320 FDESGTSASEETTSALPSSVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRA 399 (420)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~El~~L~~A~eagVvYIlG~~~v~ar~~Ss~~Kk~vin~~Y~fLRkN~R~ 399 (420)
+ . .. +...+||++.+++|+|+||+|++||++++++++|+++||+.||++|.|||||||+
T Consensus 609 ----~---~-----~~---------~~~~eee~~~~~~~~~~gv~yflg~~~~~~~~~~~~~~~~~I~~lf~~l~rn~~~ 667 (688)
T TIGR00794 609 ----D---K-----RC---------RMPIEEIFENAMETKEHGYSYFMGEESLILKKRSPILRKIRVNHVFLFIRRNARR 667 (688)
T ss_pred ----c---c-----cc---------ccchHHHHHHHHHHhhcCCEEEeeceEEEECCCccHHHHHHHHHHHHHHHHhccC
Confidence 0 0 00 1135789999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCeeEeeeEEEC
Q 014677 400 GAANMSVPHMNILQVGMTYMV 420 (420)
Q Consensus 400 ~~~~L~IPh~~LlEVGmvy~v 420 (420)
+...++|||+|++||||.|||
T Consensus 668 ~~~~~~iP~~rvvevG~~~~i 688 (688)
T TIGR00794 668 APKVLEIPPDRLLEVGTVVEI 688 (688)
T ss_pred hhhheeCChhhEEEEeeEEEC
Confidence 999999999999999999996
No 6
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=100.00 E-value=1.4e-94 Score=762.98 Aligned_cols=322 Identities=28% Similarity=0.507 Sum_probs=298.2
Q ss_pred CcccchhhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHH
Q 014677 1 MIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLV 80 (420)
Q Consensus 1 IIASQA~ISg~FSl~~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~i 80 (420)
||||||+|||+||+++||++||||||+||+|||++++||||||.|||+||++|++++++||||++||+|||+||++||+|
T Consensus 298 IIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiAVt~tM~i 377 (622)
T PRK10745 298 VIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVL 377 (622)
T ss_pred HHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhhhheeHhHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCC
Q 014677 81 SSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKIS 160 (420)
Q Consensus 81 TT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~ 160 (420)
||+|++++++.+|+|+++++++++++|+++|++||+||+.||+||||+||++|++++++|++|++|++++++++.++++|
T Consensus 378 TT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~v~~~iM~tW~~G~~~~~~~~~~~~~~ 457 (622)
T PRK10745 378 TSILSTTVARKNWHWNKYFVALILIAFLCIDIPLFSANLDKLLSGGWLPLSLGLVMFIVMTTWKSERFRLLRRMHEHGNS 457 (622)
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCcCCCcccceEEEEeecCCCCchhHHHHHhhhcCccceEEEEEEEEEeeccccCCCceEEEEEecCCCccEE
Q 014677 161 MDFLLDLGSTLGTVRVPGIGLLYNELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMF 240 (420)
Q Consensus 161 ~~~~~~~~~~~~~~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~y 240 (420)
+++|++.+++.++.|+||+|+|+|+..+++|+++.||+|||+++||++||+||+++|+|+||++||++++++++ |+|
T Consensus 458 l~~f~~~l~~~~~~rvpG~avflt~~~~~vP~~l~h~lk~~~~lhe~~v~l~v~~~~~P~V~~~eR~~v~~l~~---g~~ 534 (622)
T PRK10745 458 LEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQLSP---TFW 534 (622)
T ss_pred HHHHHHHhhhcCCCccCeEEEEEeCCCCCCCHHHHHHhhcCCccceEEEEEEEEECCCcccCcccEEEEEEECC---CEE
Confidence 99999999888878999999999999999999999999999999999999999999999999999999999996 799
Q ss_pred EEEEEEeeecccccChhHHHHHHHHHHHHHHHHhhhhhHhhhcccCCccccccccCCCCCCCCCCCcccccccccccccc
Q 014677 241 RCVTRYGYKDVRKEDHHVFEQLLVASLEKFLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERRF 320 (420)
Q Consensus 241 r~v~ryGy~d~~~~~~~~f~~~lv~~L~~fI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (420)
||++||||||+|+. ++.+ +.... ++ .+ .+
T Consensus 535 rv~~~yGf~e~~~i-~~~L------------~~~~~------~g--~~--------------~~---------------- 563 (622)
T PRK10745 535 RVVASYGWRETPNV-EEVF------------HRCGL------EG--LS--------------CR---------------- 563 (622)
T ss_pred EEEEEecCCCCCCH-HHHH------------HHHHh------CC--CC--------------CC----------------
Confidence 99999999999875 2222 11000 00 00 00
Q ss_pred ccCCCCCCccccCCCCCcccccCCCccHHHHHHHHHHHHhCCcEEEeeecEEEEcCCCC---hhHHHHHHHHHHHHhhhc
Q 014677 321 DESGTSASEETTSALPSSVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSF---FLKKLVINYFYAFLRRNC 397 (420)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~El~~L~~A~eagVvYIlG~~~v~ar~~Ss---~~Kk~vin~~Y~fLRkN~ 397 (420)
-..++|.+||+.+...++++ |-|| +|.||.||+
T Consensus 564 ---------------------------------------~~~~s~fl~r~~l~~~~~~~m~~wr~~-----lF~~m~rna 599 (622)
T PRK10745 564 ---------------------------------------MMETSFFMSHESLILGKRPWYLRLRGK-----LFLLLQRNA 599 (622)
T ss_pred ---------------------------------------ccceEEEEeeEEEEeCCCCCcHHHHHH-----HHHHHHHcC
Confidence 02679999999999888887 5554 799999999
Q ss_pred cCCcccccCCCCCeeEeeeEEEC
Q 014677 398 RAGAANMSVPHMNILQVGMTYMV 420 (420)
Q Consensus 398 R~~~~~L~IPh~~LlEVGmvy~v 420 (420)
++....+++|++|++|+|+.+|+
T Consensus 600 ~~~~~~f~lP~~rvvelG~~v~i 622 (622)
T PRK10745 600 LRAPDQFEIPPNRVIELGTQVEI 622 (622)
T ss_pred CCHHHHhCCCcccEEEEeeEEeC
Confidence 99999999999999999999886
No 7
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=100.00 E-value=3.1e-86 Score=693.98 Aligned_cols=248 Identities=43% Similarity=0.742 Sum_probs=245.4
Q ss_pred CcccchhhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHH
Q 014677 1 MIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLV 80 (420)
Q Consensus 1 IIASQA~ISg~FSl~~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~i 80 (420)
||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|++++++||||++||+|||+||++||++
T Consensus 287 IIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAVt~tM~i 366 (534)
T PF02705_consen 287 IIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAVTGTMLI 366 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCC
Q 014677 81 SSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKIS 160 (420)
Q Consensus 81 TT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~ 160 (420)
||+|++++++.+||||++++++++++|+++|++||+||+.||+||||+||++|++++++|++|++|++++++++.+++++
T Consensus 367 TT~L~~~v~~~~w~~~~~~~~~~~~~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~iM~tW~~G~~~~~~~~~~~~~~ 446 (534)
T PF02705_consen 367 TTILLFLVMRRVWKWPLWLALLFFLFFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFTIMYTWRRGRKLLYEFERENKLP 446 (534)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCcCCCcccceEEEEeecCCCCchhHHHHHhhhcCccceEEEEEEEEEeeccccCCCceEEEEEecCCCccEE
Q 014677 161 MDFLLDLGSTLGTVRVPGIGLLYNELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMF 240 (420)
Q Consensus 161 ~~~~~~~~~~~~~~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~y 240 (420)
+++++++.++.++.|+||+|+|+|+..+++|+++.||++||+++||+++|++++++|+|+||++|||+++++++ +|+|
T Consensus 447 ~~~~~~~~~~~~~~rvpG~aVFlt~~~~~vP~~l~h~l~~~~vlhe~~v~l~v~~~~vP~V~~~~R~~v~~l~~--~g~~ 524 (534)
T PF02705_consen 447 LDDFLELLEDQSIPRVPGTAVFLTRSPDGVPPALLHNLKHNKVLHERVVFLTVKTEPVPRVPPEERYEVERLGP--DGFY 524 (534)
T ss_pred HHHHHHhhhhCCCceecceEEEEcCCCccCcHHHHHHHHhCCcccceEEEEEEEEeccCCCCCceEEEEEEecC--CCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 3899
Q ss_pred EEEEEEeeec
Q 014677 241 RCVTRYGYKD 250 (420)
Q Consensus 241 r~v~ryGy~d 250 (420)
||++||||||
T Consensus 525 rv~~ryGf~e 534 (534)
T PF02705_consen 525 RVTLRYGFME 534 (534)
T ss_pred EEEEEecCCC
Confidence 9999999998
No 8
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-85 Score=679.90 Aligned_cols=324 Identities=30% Similarity=0.511 Sum_probs=299.5
Q ss_pred CcccchhhhhhhhHHHHHHHcCCCCcceEEecCCccCCceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHH
Q 014677 1 MIASQAMISATFSCIKQAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLV 80 (420)
Q Consensus 1 IIASQA~ISg~FSl~~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~i 80 (420)
||||||+|||+||+++||++||++|||||.|||+++.||||||.|||+|++++++++++||+|++||+|||||||+||+|
T Consensus 303 VIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiAVTgtM~i 382 (627)
T COG3158 303 VIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIAVTGTMVI 382 (627)
T ss_pred HHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChheeehhHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCC
Q 014677 81 SSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKIS 160 (420)
Q Consensus 81 TT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~ 160 (420)
||+|++++++..|||+++.+.++.++|+++|+.||+||+.|+.||||+|+++|++++++|+||++|+++++++..++.+|
T Consensus 383 Tt~L~~~~~~~~w~w~~~~~~~~~~~f~~id~~Ff~AN~~Ki~~GGw~pllia~~i~~vM~tW~~g~~~l~~~~~~~~i~ 462 (627)
T COG3158 383 TTILLTVVMRKKWKWRKWLVALILIVFLAIDILFFAANLLKIHDGGWLPLLLAAVIFFVMWTWKRGRQILFEKTRENGIP 462 (627)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcCcCCCcccceEEEEeecCCCCchhHHHHHhhhcCccceEEEEEEEEEeeccccCCCceEEEEEecCCCccEE
Q 014677 161 MDFLLDLGSTLGTVRVPGIGLLYNELVQGIPSIFGQFLLSLPAIHSTIVFVCIKYVPVPMVRLEERFLFRRVGPKDYHMF 240 (420)
Q Consensus 161 ~~~~~~~~~~~~~~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lh~~~vfv~i~~~~vP~V~~~eR~~v~~~~~~~~~~y 240 (420)
+|.|++.+++.++.||||||+|+|+..+.+|.+++|++|||+++||++||+++++.++|+|+++||+.++++++ +++
T Consensus 463 l~~fi~~l~~~~p~~v~gTAVfLt~~~~~vP~aLlhnlkhnkvlhe~nv~ltv~t~~~P~v~~~~r~~ve~l~~---~f~ 539 (627)
T COG3158 463 LDAFIASLEKHPPVRVPGTAVFLTRDPDVVPRALLHNLKHNKVLHERNVFLTVRTEDVPYVHPTDRVKVEQLSD---DFV 539 (627)
T ss_pred HHHHHHHHhhCCCcccCceEEEEcCCCCcCcHHHHHHhhhhheeeeeEEEEEEEecCCCCCCccceeeeeeccC---ceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 699
Q ss_pred EEEEEEeeecccccChhHHHHHHHHHHHHHHHHhhhhhHhhhcccCCccccccccCCCCCCCCCCCcccccccccccccc
Q 014677 241 RCVTRYGYKDVRKEDHHVFEQLLVASLEKFLRKEAQDLALERNLLESDLDSVSVASRDPEASGSYGTEELKIPLMHERRF 320 (420)
Q Consensus 241 r~v~ryGy~d~~~~~~~~f~~~lv~~L~~fI~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (420)
|+.++|||||+|+. + +- ++.... ++ .+
T Consensus 540 rV~l~~Gfme~pnv-p-~~-----------l~~~~~------~G--~~-------------------------------- 566 (627)
T COG3158 540 RVVLHFGFMETPNV-P-RA-----------LRLCRK------KG--LK-------------------------------- 566 (627)
T ss_pred EEEEEeeccCCCCH-H-HH-----------HHHHhh------cC--ce--------------------------------
Confidence 99999999999986 2 21 111110 00 00
Q ss_pred ccCCCCCCccccCCCCCcccccCCCccHHHHHHHHHHHHhCCcEEEeeecEEEEcCCCChhHHHHHHHHHHHHhhhccCC
Q 014677 321 DESGTSASEETTSALPSSVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAG 400 (420)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~El~~L~~A~eagVvYIlG~~~v~ar~~Ss~~Kk~vin~~Y~fLRkN~R~~ 400 (420)
| + -....|.+|++.++++++|++.+ +.. ..|.+|.||.-++
T Consensus 567 -------------------f--~----------------im~tsFfl~re~l~~~~~~g~~~-w~~-~lfi~l~r~aa~~ 607 (627)
T COG3158 567 -------------------F--D----------------IMETSFFLSRESLIASKNSGMPR-WRD-RLFIALARNAASP 607 (627)
T ss_pred -------------------e--c----------------ccceEEEEEeeeeecCCCCCchH-HHH-HHHHHHHHhcCCH
Confidence 0 0 01357999999999999999865 444 6899999999999
Q ss_pred cccccCCCCCeeEeeeEEE
Q 014677 401 AANMSVPHMNILQVGMTYM 419 (420)
Q Consensus 401 ~~~L~IPh~~LlEVGmvy~ 419 (420)
...++||.+|++|+|---|
T Consensus 608 ~~~F~lp~~rvvElGtqve 626 (627)
T COG3158 608 TDYFKLPPNRVVELGTQVE 626 (627)
T ss_pred HHhhCCCCCcEEEeeeeee
Confidence 9999999999999995544
No 9
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=81.35 E-value=14 Score=36.90 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=54.0
Q ss_pred hHHhhhhhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH----HHHHHHHhhhccccCCcc---------HHHH
Q 014677 65 DIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGS----VELLYMSAVLSKIAEGGW---------LPLA 131 (420)
Q Consensus 65 ~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~----id~~f~sa~l~K~~~GGW---------~pl~ 131 (420)
+-=..||.+|..+.++.++-+++.+..+.+.+++.++++.++++. +|-..+|+.-.+-..+.+ +.++
T Consensus 13 ~k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvl 92 (301)
T PF14362_consen 13 NKYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVL 92 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 334578999999999999999999988999887777776665554 555555543222211111 2334
Q ss_pred HHHHhHhhhhhhhhhHHHHH
Q 014677 132 FASVFLCVMYIWNYGSVLKY 151 (420)
Q Consensus 132 ia~i~~~iM~~W~~G~~~~~ 151 (420)
+|.++...+..+-+..++..
T Consensus 93 iaivIs~pl~l~iF~~eI~~ 112 (301)
T PF14362_consen 93 IAIVISEPLELKIFEKEIDQ 112 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666655443
No 10
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=79.39 E-value=5.9 Score=37.60 Aligned_cols=21 Identities=5% Similarity=0.287 Sum_probs=16.8
Q ss_pred CccHHHHHHHHhHhhhhhhhh
Q 014677 125 GGWLPLAFASVFLCVMYIWNY 145 (420)
Q Consensus 125 GGW~pl~ia~i~~~iM~~W~~ 145 (420)
.+|+-+++|++.+.+-+-|++
T Consensus 179 ~~~~~iiig~i~~~~~~~lkk 199 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKK 199 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999888766653
No 11
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=59.41 E-value=8.1 Score=37.82 Aligned_cols=40 Identities=23% Similarity=0.660 Sum_probs=31.9
Q ss_pred HHHHhhhcccc------CCccHHHHHHHHhHhhhhhhhhhHHHHHH
Q 014677 113 LYMSAVLSKIA------EGGWLPLAFASVFLCVMYIWNYGSVLKYR 152 (420)
Q Consensus 113 ~f~sa~l~K~~------~GGW~pl~ia~i~~~iM~~W~~G~~~~~~ 152 (420)
.||++-..-+. +|||..++++.++..+..+|++--+.+.+
T Consensus 243 VFl~~W~~~~~d~~~~i~~G~isiv~Gliiv~iLii~N~kvEv~AR 288 (304)
T COG4059 243 VFLSSWVTTVFDPAVSIQGGWISIVAGLIIVLILIIWNRKVEVKAR 288 (304)
T ss_pred hhhhhhhhhhcCcccccccchhhhHHHHHHHHHHHHhcchhhhhhh
Confidence 56666555555 89999999999999999999986665543
No 12
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=53.58 E-value=8.3 Score=41.09 Aligned_cols=88 Identities=22% Similarity=0.380 Sum_probs=57.1
Q ss_pred cCCCCcceEEecCCccCC----ceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHHHHHHHHHHHH-----H
Q 014677 21 LGCFPRLKIIHTSRKRMG----QIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVML-----L 91 (420)
Q Consensus 21 Lg~fPr~kI~hTS~~~~G----QIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~-----~ 91 (420)
-|-.||+-+...=+...| |+|+|.+= + -.+-=|-.-=|-++-.+=-.++||.+..|||++...=.- +
T Consensus 226 TG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~L---i-VilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSY 301 (459)
T KOG3643|consen 226 TGNYSRLSLSFQLRRNIGFYILQTYIPSTL---I-VILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVSY 301 (459)
T ss_pred cccceeEEEEEEEEeeccEEEEeeecchhh---h-hHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCccc
Confidence 688899999888888888 99999852 1 111112222355666677899999999999998765321 1
Q ss_pred HHhcchHHHHHHHHHHHH-HHH
Q 014677 92 IWQTNLLLVLCFPLVFGS-VEL 112 (420)
Q Consensus 92 ~w~~~~~~~~~~~~~F~~-id~ 112 (420)
+.-.-+++...|+.+|++ +|-
T Consensus 302 VKAiDiYL~vCFvfVF~sLLEY 323 (459)
T KOG3643|consen 302 VKAIDVYLGVCFVFVFLSLLEY 323 (459)
T ss_pred eeeehhhhhHHHHHHHHHHHHH
Confidence 233344555666666655 443
No 13
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=52.40 E-value=4.7 Score=40.86 Aligned_cols=60 Identities=23% Similarity=0.437 Sum_probs=0.0
Q ss_pred HHHHHh--cchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHH---HHhHhhhhhhhhhHHHHH
Q 014677 89 MLLIWQ--TNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFA---SVFLCVMYIWNYGSVLKY 151 (420)
Q Consensus 89 ~~~~w~--~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia---~i~~~iM~~W~~G~~~~~ 151 (420)
|.+.|+ -++|-.+.|++.|+.-=++...|.+ .+=+||++++- .++|.-.++|-|-+....
T Consensus 126 m~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~---L~qaWfT~L~dL~WL~LFlaiLIWlY~H~~~~ 190 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFCLAFLLAIVLLIIAVL---LHQAWFTILVDLYWLLLFLAILIWLYVHDQRH 190 (381)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444 4777778888777654444445554 46789999875 467777889998776653
No 14
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=49.32 E-value=53 Score=31.43 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=35.0
Q ss_pred HHHHHHHHhheeeEEeCChhhHHhhh--hhhhHHHHHHHHHHHHHHHHHH
Q 014677 45 INWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI 92 (420)
Q Consensus 45 vNw~Lmi~~i~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~~~ 92 (420)
+|-..+.-.+.++-...-|+++.+|. |+||+.+|.+++.+.+++-..+
T Consensus 14 ~nN~vl~~~LG~Cp~laVs~~~~~a~gmGlav~fV~~~s~~~~~~i~~~i 63 (193)
T PRK05151 14 VNNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASICAWLVNTYI 63 (193)
T ss_pred HhhHHHHHHHhcCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555566666666778888877 6788999999999888877655
No 15
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=47.64 E-value=1e+02 Score=31.96 Aligned_cols=135 Identities=15% Similarity=0.192 Sum_probs=83.9
Q ss_pred hhhhhhhHHHHHHHcCCC-CcceEEecCCccCCceechhHHHHHHHHhheeeEEeC-------ChhhHHhhhhhhhHHHH
Q 014677 7 MISATFSCIKQAMALGCF-PRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQ-------STTDIANAYGIAEVGVM 78 (420)
Q Consensus 7 ~ISg~FSl~~Qai~Lg~f-Pr~kI~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~-------~S~~l~~AYGiaV~~~M 78 (420)
+||-+|.-+.|..-+=++ ||-| -+..|=.+..+|+++..++-+..+ ..+....---.....-.
T Consensus 168 lis~~~l~l~qvqiv~rlF~R~~---------eK~~i~~vG~~L~i~~~il~ai~~f~~~~~~~~~~~~~lp~~~yl~~i 238 (348)
T PF08733_consen 168 LISNFFLQLAQVQIVIRLFPRQK---------EKRIIFWVGFILIILDQILWAINQFSYFDSDPNSFLDILPAFSYLFRI 238 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcccC---------cEEEEeeHHHHHHHHHHHHHHHHHhccCCCCccccccchHHHHHHHHH
Confidence 688899999998876554 8844 334477777778777655544333 22222222223334445
Q ss_pred HHHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHHHHHHHHhhhccccCCcc---HHHHHHHHhHhhhhhhhhhH
Q 014677 79 LVSSTLVTIVMLLIWQT--------NLLLVLCFPLVFGSVELLYMSAVLSKIAEGGW---LPLAFASVFLCVMYIWNYGS 147 (420)
Q Consensus 79 ~iTT~L~~~v~~~~w~~--------~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW---~pl~ia~i~~~iM~~W~~G~ 147 (420)
.+-++...++..+.|.. +.+..+++.++...+-.+||..-..+..-=|| |+-+..++..++-+=|-.-=
T Consensus 239 al~~~ya~~v~~y~~~k~k~~~~~~~~~~L~il~~~~i~l~~vffI~dis~~~v~~w~~~~~~~~~~~~tVivWEWi~ri 318 (348)
T PF08733_consen 239 ALSTLYAAWVIYYIISKKKYCFDYKQMIPLAILNLLLILLPVVFFILDISNWWVSGWSEYFRWVLYVAATVIVWEWINRI 318 (348)
T ss_pred HHHHHHHHHHHHHHHhhhhhheecchHHHHHHHHHHHHHHHHHhheeEccchhhhhHHHHHHHHHHHHHhhhHHHhhhHH
Confidence 55666666666666544 44556667777788899999888888888888 56666665555544444443
Q ss_pred HHH
Q 014677 148 VLK 150 (420)
Q Consensus 148 ~~~ 150 (420)
+.+
T Consensus 319 e~l 321 (348)
T PF08733_consen 319 ERL 321 (348)
T ss_pred HHH
Confidence 333
No 16
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=46.59 E-value=82 Score=29.89 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=34.1
Q ss_pred HHHHHHHHhheeeEEeCChhhHHhhh--hhhhHHHHHHHHHHHHHHHHHH
Q 014677 45 INWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI 92 (420)
Q Consensus 45 vNw~Lmi~~i~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~~~ 92 (420)
+|-..+.-.+.+.-...-|+++.+|- |+||+.+|++++.+...+=..+
T Consensus 14 ~~N~vl~~~LGlcp~l~vs~~~~~a~~mGlav~~V~~~s~~~~~~l~~~i 63 (190)
T PF02508_consen 14 VNNPVLVQFLGLCPFLAVSTSLENALGMGLAVTFVLTLSSVLISLLRNFI 63 (190)
T ss_pred HhHHHHHHHHHhcchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666677777765 6788888999999988877766
No 17
>PF02660 G3P_acyltransf: Glycerol-3-phosphate acyltransferase; InterPro: IPR003811 This entry describes glycerol-3-phosphate acyltransferase. It catalyses the transfer of an acyl group from acyl-phosphate (acyl-PO4) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilises acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. ; GO: 0005886 plasma membrane
Probab=44.35 E-value=2.2e+02 Score=26.50 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=46.5
Q ss_pred EEeCChhhHHhhhhhhhHHHHHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHH
Q 014677 58 SIFQSTTDIANAYGIAEVGVMLVSSTL--VTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASV 135 (420)
Q Consensus 58 ~~F~~S~~l~~AYGiaV~~~M~iTT~L--~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i 135 (420)
+.||--..+|.+.|+-....-..+-+. ..++...++|....-.+..+.++. +- .++ .+.+++..+.++
T Consensus 91 l~FkGGKGvAt~~G~ll~l~p~~~li~~~~~~~~~~~~r~~s~~s~~~~~~~~-~~-~~~--------~~~~~~~~~~~~ 160 (178)
T PF02660_consen 91 LKFKGGKGVATSLGVLLALSPWLALIALAVFLILLLITRYVSLASIIAFIILP-IL-AWL--------WGYSLAYVLFAI 160 (178)
T ss_pred hCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HH-HHH--------HhCCHHHHHHHH
Confidence 458999999999998665544433332 233333344433222222111111 11 111 667777777777
Q ss_pred hHhhhhhhhhhHHHH
Q 014677 136 FLCVMYIWNYGSVLK 150 (420)
Q Consensus 136 ~~~iM~~W~~G~~~~ 150 (420)
+..++.+|++-+..+
T Consensus 161 ~l~~li~~~h~~Ni~ 175 (178)
T PF02660_consen 161 ILALLIIYRHRENIK 175 (178)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888776655
No 18
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=44.14 E-value=81 Score=30.36 Aligned_cols=48 Identities=10% Similarity=0.303 Sum_probs=34.2
Q ss_pred HHHHHHHHhheeeEEeCChhhHHhhh--hhhhHHHHHHHHHHHHHHHHHH
Q 014677 45 INWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI 92 (420)
Q Consensus 45 vNw~Lmi~~i~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~~~ 92 (420)
+|-..+.-.+.++-...-|+++.+|- |+||+.+|.+++.+..++-..+
T Consensus 13 ~~N~vl~~~LGlCp~l~vs~~~~~a~gmGlAvtfV~~~s~~~~~~i~~~i 62 (200)
T TIGR01940 13 VENMALSFFLGMCTFLAVSKKVSTAFGLGVAVTFVLTITVPINNLIYTYI 62 (200)
T ss_pred HhhHHHHHHHhcCchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666666777787776 6788889999988888776654
No 19
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=40.83 E-value=84 Score=30.23 Aligned_cols=48 Identities=8% Similarity=0.320 Sum_probs=34.0
Q ss_pred HHHHHHHHhheeeEEeCChhhHHhhh--hhhhHHHHHHHHHHHHHHHHHH
Q 014677 45 INWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI 92 (420)
Q Consensus 45 vNw~Lmi~~i~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~~~ 92 (420)
+|-..+.-.+.++-...-|+++.+|- |+||+.+|.+++.+..++-..+
T Consensus 15 ~nN~vl~~~LGlCp~laVs~~~~~algmGlAvtfVl~~s~~~~~~i~~~i 64 (199)
T PRK12456 15 VENMALNFFLGMCTFLAISKKVETAFGLGLTVTALLAIATPLNNLIYTYI 64 (199)
T ss_pred HhhHHHHHHHhcCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555566666666677778888877 6778888888888777766544
No 20
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=38.96 E-value=28 Score=25.57 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=14.5
Q ss_pred HhHhhhhhhhhhHHHHHHHHHhcCCChH
Q 014677 135 VFLCVMYIWNYGSVLKYRSEVREKISMD 162 (420)
Q Consensus 135 i~~~iM~~W~~G~~~~~~~~~~~~~~~~ 162 (420)
+++.....|.+-++.+.+++....+|++
T Consensus 20 ~~F~gi~~w~~~~~~k~~~e~aa~lpl~ 47 (49)
T PF05545_consen 20 VFFIGIVIWAYRPRNKKRFEEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHHcccchhhHHHHHccCcc
Confidence 3333444455544445555555566665
No 21
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=38.79 E-value=1e+02 Score=30.66 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=33.0
Q ss_pred HHHHHHHHhheeeEEeCChhhHHhhh--hhhhHHHHHHHHHHHHHHHH
Q 014677 45 INWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVML 90 (420)
Q Consensus 45 vNw~Lmi~~i~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~ 90 (420)
+|-..+.-.+.++-...-|+++.+|. |+||+.+|.+++.+..++-.
T Consensus 21 ~nN~vl~~~LG~Cp~LaVS~~~~~a~gMGlAvtfVl~~S~~i~~~l~~ 68 (244)
T PRK01061 21 IQNILLSNFLGMCSYLACSSRLSTANGLGMSVALVLTVTGSINWFVHA 68 (244)
T ss_pred HhhHHHHHHHhcCcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666677778888877 67788888888888777643
No 22
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=37.08 E-value=6.9 Score=36.73 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=48.8
Q ss_pred HHHHH-HHHHHhCCcEEEeeecEEEEcCCCChhHHHHHHHHHHHH---hhhccCCcccccCCCCCeeEee
Q 014677 350 YELSA-LREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFL---RRNCRAGAANMSVPHMNILQVG 415 (420)
Q Consensus 350 ~El~~-L~~A~eagVvYIlG~~~v~ar~~Ss~~Kk~vin~~Y~fL---RkN~R~~~~~L~IPh~~LlEVG 415 (420)
+|+.+ +++++++|.--++-. ..+.++=.++..++-+||+|.-. ++++|...+.+++|.++++-||
T Consensus 49 pe~~~W~~e~k~~gi~v~vvS-Nn~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVS-NNKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEe-CCCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEc
Confidence 34444 677888887544432 25666667788899999888764 5788888999999999999988
No 23
>PRK14417 membrane protein; Provisional
Probab=37.06 E-value=2.1e+02 Score=28.23 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=14.5
Q ss_pred EeCChhhHHhhhhhhhHH
Q 014677 59 IFQSTTDIANAYGIAEVG 76 (420)
Q Consensus 59 ~F~~S~~l~~AYGiaV~~ 76 (420)
.||-...+|-+-|+....
T Consensus 101 ~FKGGKGVAt~~Gvll~l 118 (232)
T PRK14417 101 RFNGGRGIATSLGVALVM 118 (232)
T ss_pred CCcChhHHHHHHHHHHHH
Confidence 599999999998886543
No 24
>PF02361 CbiQ: Cobalt transport protein; InterPro: IPR003339 Cobalt transport proteins are most often found in cobalamin (vitamin B12) biosynthesis operons. Salmonella typhimurium synthesizes cobalamin (vitamin B12) de novo under anaerobic conditions. Not all Salmonella and Pseudomonas cobalamin synthetic genes have apparent homologs in the other species suggesting that the cobalamin biosynthetic pathways differ between the two organisms [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process
Probab=35.70 E-value=3.5e+02 Score=24.84 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=11.1
Q ss_pred hhHHHHHHHHhheeeEEeCC
Q 014677 43 PVINWFLMIMCVVVVSIFQS 62 (420)
Q Consensus 43 P~vNw~Lmi~~i~vv~~F~~ 62 (420)
|...+++.++.++++..+.+
T Consensus 10 p~~kl~~~~~~~~~~~~~~~ 29 (224)
T PF02361_consen 10 PRTKLIFLILLSVIVFLTNN 29 (224)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56666666665555444333
No 25
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=35.28 E-value=1.3e+02 Score=32.42 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=14.0
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 014677 68 NAYGIAEVGVMLVSSTLVT 86 (420)
Q Consensus 68 ~AYGiaV~~~M~iTT~L~~ 86 (420)
..||+++..-+++..++..
T Consensus 24 ~~YGl~ialGil~a~~l~~ 42 (460)
T PRK13108 24 RAYAVCVITGIIVALLIGD 42 (460)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6799988888887655544
No 26
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=33.25 E-value=1.3e+02 Score=28.96 Aligned_cols=48 Identities=13% Similarity=0.332 Sum_probs=34.2
Q ss_pred HHHHHHHHhheeeEEeCChhhHHhhh--hhhhHHHHHHHHHHHHHHHHHH
Q 014677 45 INWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLLI 92 (420)
Q Consensus 45 vNw~Lmi~~i~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~~~ 92 (420)
+|-..+.-.+.++-...-|++..+|- |+||+.+|.+++.+...+-..+
T Consensus 14 ~nN~vl~~~LGlCp~l~vs~~~~~a~gmGlavt~Vl~~s~~~~~~l~~~i 63 (202)
T PRK02830 14 IENMALAFFLGMCTFLAVSKKVSTAFGLGIAVIVVLTITVPVNNLIYNYV 63 (202)
T ss_pred HhhHHHHHHHhcCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555566666666777777776 7788899999988888776544
No 27
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=32.53 E-value=1.5e+02 Score=26.54 Aligned_cols=53 Identities=13% Similarity=-0.056 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH-hcc----hHHHHHHHHHHHHHHHHHHHhhhcccc
Q 014677 71 GIAEVGVMLVSSTLVTIVMLLIW-QTN----LLLVLCFPLVFGSVELLYMSAVLSKIA 123 (420)
Q Consensus 71 GiaV~~~M~iTT~L~~~v~~~~w-~~~----~~~~~~~~~~F~~id~~f~sa~l~K~~ 123 (420)
|+=+..+|+-|.+..++.....| .|+ .++.+.+.++-++.|+.++...+.|+-
T Consensus 82 v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~e 139 (142)
T PF11712_consen 82 VFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKVE 139 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555555555555555666566 443 344444555566679999998888764
No 28
>PF11086 DUF2878: Protein of unknown function (DUF2878); InterPro: IPR021306 This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.
Probab=32.32 E-value=2.1e+02 Score=26.08 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=57.1
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhhhhh
Q 014677 66 IANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNY 145 (420)
Q Consensus 66 l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~W~~ 145 (420)
++++.+...++.+++-++... ..++.....++...++=..+|.+.....+..+++++++|+=+.+.=+....+++.
T Consensus 19 lg~~~~~~~~~~~~~~~l~~s----~~~~~~~~~~~~~~~~G~~~D~~l~~~Gv~~f~~~~~~PlWL~~LW~~Fa~~l~~ 94 (152)
T PF11086_consen 19 LGAARALWWLALLLLLHLALS----PQRRAELRLLLLAALLGILLDSLLLYLGVFSFPGSSLFPLWLILLWLAFATTLNH 94 (152)
T ss_pred HhhhhHHHHHHHHHHHHHHHc----cCchHHHHHHHHHHHHHHHHHHHHHHCCeeecCCCCCccHHHHHHHHHHHHHHHH
Confidence 456677777776644333331 2233333334444444456999999999999999999999999988888888887
Q ss_pred hHHHHHH
Q 014677 146 GSVLKYR 152 (420)
Q Consensus 146 G~~~~~~ 152 (420)
.-....+
T Consensus 95 sl~wL~~ 101 (152)
T PF11086_consen 95 SLAWLRR 101 (152)
T ss_pred HHHHHHh
Confidence 7655533
No 29
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=31.63 E-value=1.9e+02 Score=26.46 Aligned_cols=44 Identities=9% Similarity=-0.054 Sum_probs=19.4
Q ss_pred ccHHHHHHHHhHhhhhhhhhhHHHHHHHHHhcCCChHHHHHhcC
Q 014677 126 GWLPLAFASVFLCVMYIWNYGSVLKYRSEVREKISMDFLLDLGS 169 (420)
Q Consensus 126 GW~pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~~~~ 169 (420)
||+++--.++...+..++|----...-.-.--..+.+++...+.
T Consensus 81 ~~~~it~~gl~~~~~~~lR~~~~~~~~~~~~~TT~~~~l~~~l~ 124 (198)
T TIGR02454 81 PLLSITREGLVYALTLALRSLTSLSAVYLLALTTPFPELLSALR 124 (198)
T ss_pred hhheecHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444333444444444443333333333333456666666554
No 30
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=31.42 E-value=1.6e+02 Score=28.09 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=30.4
Q ss_pred HHHHHHHhheeeEEeCChhhHHhhh--hhhhHHHHHHHHHHHHHHHHH
Q 014677 46 NWFLMIMCVVVVSIFQSTTDIANAY--GIAEVGVMLVSSTLVTIVMLL 91 (420)
Q Consensus 46 Nw~Lmi~~i~vv~~F~~S~~l~~AY--GiaV~~~M~iTT~L~~~v~~~ 91 (420)
|-..+.-.+.++-...-|+++.||- |+||+.+|.+++.+...+-..
T Consensus 14 ~N~vl~~~LG~Cp~l~vs~~~~~a~gmGlav~~V~~~s~~~~~~i~~~ 61 (190)
T TIGR01943 14 NNFVLVKFLGLCPFLGVSKKLETAIGMGLAVTFVMTLASVISWLVYNF 61 (190)
T ss_pred hhHHHHHHHhcCchhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555556677777776 677888888888887776543
No 31
>PF01790 LGT: Prolipoprotein diacylglyceryl transferase; InterPro: IPR001640 Prolipoprotein diacylglyceryl transferase [] is the bacterial enzyme catalysing the first step in lipoprotein biogenesis. It transfers the n-acyl diglyceride group onto what will become the N-terminal cysteine of membrane lipoproteins. This enzyme is an integral membrane protein.; GO: 0016757 transferase activity, transferring glycosyl groups, 0009249 protein lipoylation, 0042158 lipoprotein biosynthetic process, 0016020 membrane
Probab=29.22 E-value=4.3e+02 Score=25.77 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=17.3
Q ss_pred hccccCCcc--HHHHHHHHhHhhhhhhhhh
Q 014677 119 LSKIAEGGW--LPLAFASVFLCVMYIWNYG 146 (420)
Q Consensus 119 l~K~~~GGW--~pl~ia~i~~~iM~~W~~G 146 (420)
+.++.+||. ..=++++++....+.|+++
T Consensus 80 i~~i~~GGl~~~GGligg~l~~~~~~r~~~ 109 (256)
T PF01790_consen 80 ILAIWDGGLSFYGGLIGGILAGIWYARRRK 109 (256)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHhC
Confidence 457789994 4455566666655555544
No 32
>PRK14419 membrane protein; Provisional
Probab=28.35 E-value=5.3e+02 Score=24.61 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=18.2
Q ss_pred EEeCChhhHHhhhhhhhHHHHHHH
Q 014677 58 SIFQSTTDIANAYGIAEVGVMLVS 81 (420)
Q Consensus 58 ~~F~~S~~l~~AYGiaV~~~M~iT 81 (420)
+.||--...|.+.|+.....-..+
T Consensus 99 l~FkGGKGVAt~~G~ll~l~p~~~ 122 (199)
T PRK14419 99 LGFKGGKAVATGLGMLLALSWPVG 122 (199)
T ss_pred hCCcCccHHHHHHHHHHHHhHHHH
Confidence 479999999999998877654433
No 33
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=28.30 E-value=33 Score=28.07 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=11.1
Q ss_pred HHHHHhhhccCCccc
Q 014677 389 FYAFLRRNCRAGAAN 403 (420)
Q Consensus 389 ~Y~fLRkN~R~~~~~ 403 (420)
-|.|||+||+.+.-.
T Consensus 25 ~~~~LRd~C~Ca~C~ 39 (89)
T PF06155_consen 25 PYEWLRDNCPCAECR 39 (89)
T ss_dssp EHHHHHHT-SSSSTC
T ss_pred CHHHHhccCCChhhc
Confidence 489999999987643
No 34
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.17 E-value=2.8e+02 Score=27.48 Aligned_cols=23 Identities=26% Similarity=0.008 Sum_probs=15.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q 014677 68 NAYGIAEVGVMLVSSTLVTIVML 90 (420)
Q Consensus 68 ~AYGiaV~~~M~iTT~L~~~v~~ 90 (420)
..||+.+...+++...+.....+
T Consensus 20 ~~Ygl~~~lg~l~a~~~~~~~~~ 42 (269)
T PRK12437 20 HWYGIIIGLGVLLGLWLATREGK 42 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888887776665554443
No 35
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=27.05 E-value=79 Score=27.15 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=21.7
Q ss_pred EEEEEecCCCccEEEEEEEEeeecccc
Q 014677 227 FLFRRVGPKDYHMFRCVTRYGYKDVRK 253 (420)
Q Consensus 227 ~~v~~~~~~~~~~yr~v~ryGy~d~~~ 253 (420)
+.+..+...|.|.|+|.+.+|.-|..+
T Consensus 76 L~I~nl~~sDsG~Y~C~V~~g~~~~~~ 102 (112)
T cd05900 76 LEITELRSNDSGTYRCEVMHGIEDNYD 102 (112)
T ss_pred EEEeecccccCEEEEEEEecCCCCcee
Confidence 566677777789999999999887653
No 36
>PF01699 Na_Ca_ex: Sodium/calcium exchanger protein; InterPro: IPR004837 The sodium/calcium exchangers are a family of integral membrane proteins. This domain covers the integral membrane regions of these proteins. Sodium/calcium exchangers regulate intracellular Ca2+ concentrations in many cells; cardiac myocytes, epithelial cells, neurons retinal rod photoreceptors and smooth muscle cells []. Ca2+ is moved into or out of the cytosol depending on Na+ concentration []. In humans and rats there are 3 isoforms; NCX1 NCX2 and NCX3 []. ; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3V5U_A 3V5S_A.
Probab=26.46 E-value=71 Score=27.23 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=32.8
Q ss_pred ecCCccCCceechhHHHH--HHHHhheeeEEeCChhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 014677 31 HTSRKRMGQIYIPVINWF--LMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQ 94 (420)
Q Consensus 31 hTS~~~~GQIYIP~vNw~--Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~ 94 (420)
|-|+..-|.+=.|..|-+ +...+....- + +-.-|.|-++...++.+|+.+.+.+...|.
T Consensus 22 ~i~~~~~g~~lla~~~slpe~~~~~~~~~~---g--~~~la~~~~~Gs~~~~~~l~~gl~~l~~~~ 82 (140)
T PF01699_consen 22 GISESFLGLTLLALATSLPELIVAISAARK---G--NPDLAIGNIIGSNIFNITLIVGLILLFGPI 82 (140)
T ss_dssp TB-HCCHHHCCHHCCCCHHHHHHHHHHHCT---T---CHHHHHHHHHHHHHHHHTHHHHHHHHS-B
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHHHHhhc---c--ccchhhhcccchHHHHHHHHHHHHHHhccc
Confidence 345555566666665544 3333333322 2 444567777777788887777777766444
No 37
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=26.27 E-value=3.6e+02 Score=27.24 Aligned_cols=57 Identities=23% Similarity=0.309 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhcchHH------HH-----HHHHHHHHHH--HHHHHhhhccccCCccHHHHHHHHhHh
Q 014677 79 LVSSTLVTIVMLLIWQTNLLL------VL-----CFPLVFGSVE--LLYMSAVLSKIAEGGWLPLAFASVFLC 138 (420)
Q Consensus 79 ~iTT~L~~~v~~~~w~~~~~~------~~-----~~~~~F~~id--~~f~sa~l~K~~~GGW~pl~ia~i~~~ 138 (420)
++-|+-++.+|+..||..++. .. .-.++|..++ +.+|..+ +.+|||+.+.++.+...
T Consensus 151 vl~T~~vf~~ml~lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl~lf~~~---l~~~gplgI~~slv~v~ 220 (274)
T PF12811_consen 151 VLGTFGVFAVMLALYKTGIIRVTPKFRRIVMIATFGIALFYLVNLVLSLFVGS---LRDGGPLGIGFSLVVVG 220 (274)
T ss_pred HHHHHHHHHHHHHHHHhCCeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cccCChHHHHHHHHHHH
Confidence 345666777788788754322 11 1122333344 3344334 89999998888775444
No 38
>PRK14414 membrane protein; Provisional
Probab=25.97 E-value=6.2e+02 Score=24.62 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=42.1
Q ss_pred EeCChhhHHhhhhhhhHHHH--HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccH---HHHHH
Q 014677 59 IFQSTTDIANAYGIAEVGVM--LVSSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWL---PLAFA 133 (420)
Q Consensus 59 ~F~~S~~l~~AYGiaV~~~M--~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~---pl~ia 133 (420)
.||-...+|-+.|+.....- .+-.++.+++...+.|..-.-.+.-...+.. ..+ +.++-|. .+.+
T Consensus 103 ~FkGGKGVAt~~Gvll~l~p~~~li~~~if~i~~~~tr~vSL~Si~a~~~~pi--~~~-------~~~~~~~~~~~~~~- 172 (210)
T PRK14414 103 KFKGGKGGATAIGILAYMMPEGIPIYIACFLILMAITRFPTLSYGISFISFIL--VAW-------LGQHDMGKVLFSLL- 172 (210)
T ss_pred cCCCccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHH-------HHcCcchhHHHHHH-
Confidence 39998888888887755432 2222333334444444433322221111111 111 1445555 4433
Q ss_pred HHhHhhhhhhhhhHHHH
Q 014677 134 SVFLCVMYIWNYGSVLK 150 (420)
Q Consensus 134 ~i~~~iM~~W~~G~~~~ 150 (420)
.+++.++.+|+.-+.++
T Consensus 173 ~~~i~~lv~~rH~~NI~ 189 (210)
T PRK14414 173 VVMIPILMYIPRMKEIK 189 (210)
T ss_pred HHHHHHHHHHhhHHHHH
Confidence 57788888888755544
No 39
>PRK00701 manganese transport protein MntH; Reviewed
Probab=25.74 E-value=2.6e+02 Score=29.77 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=25.9
Q ss_pred echhHHHHHHHHhheeeEEeCChhhHHhhhhhh
Q 014677 41 YIPVINWFLMIMCVVVVSIFQSTTDIANAYGIA 73 (420)
Q Consensus 41 YIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGia 73 (420)
|=+.++|++.+.+.+..+++.-.+-+|.|-|+-
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ 136 (439)
T PRK00701 104 YPRPVVWFLWIQAELAIMATDLAEVIGAAIALK 136 (439)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 657789999888888888888777777776664
No 40
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=24.69 E-value=3.5e+02 Score=27.33 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=23.9
Q ss_pred HHHHHHHhHhhhhhhhhhHHHHHHHHHhcCC
Q 014677 129 PLAFASVFLCVMYIWNYGSVLKYRSEVREKI 159 (420)
Q Consensus 129 pl~ia~i~~~iM~~W~~G~~~~~~~~~~~~~ 159 (420)
..++|+++++.|..|-..+.++++.+.++++
T Consensus 79 ~~lvAv~~l~~m~~Wm~~~~~~~~~~i~~~~ 109 (283)
T TIGR00145 79 FGVIAVVMLSYMGLWMLRMQRKWRVKIERQL 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999866666665555443
No 41
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=24.36 E-value=2e+02 Score=30.48 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=7.7
Q ss_pred HHHHHcCCCCc
Q 014677 16 KQAMALGCFPR 26 (420)
Q Consensus 16 ~Qai~Lg~fPr 26 (420)
...-+-|.+|+
T Consensus 345 ~a~ardg~lP~ 355 (501)
T TIGR00911 345 FVGGREGHLPS 355 (501)
T ss_pred HHHHhcCCccH
Confidence 34447899997
No 42
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=24.31 E-value=3.7e+02 Score=22.21 Aligned_cols=36 Identities=31% Similarity=0.588 Sum_probs=21.6
Q ss_pred HHHHhhhccccCCccHHH-----HHHHHhHhhhhhhhhhHHH
Q 014677 113 LYMSAVLSKIAEGGWLPL-----AFASVFLCVMYIWNYGSVL 149 (420)
Q Consensus 113 ~f~sa~l~K~~~GGW~pl-----~ia~i~~~iM~~W~~G~~~ 149 (420)
.+|...|..+.=||| || .-++++..+.+++-|....
T Consensus 30 ~lfa~~Ln~~~~~Gf-Plgfw~aaQGsi~~fviLi~~Ya~~m 70 (81)
T PF13937_consen 30 ILFADELNQITFGGF-PLGFWFAAQGSIIVFVILIFVYAWRM 70 (81)
T ss_pred HHHHHHHcCCeeCCC-ChHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 567777877777776 54 3345555555555555443
No 43
>PRK14397 membrane protein; Provisional
Probab=23.43 E-value=7.1e+02 Score=24.40 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=41.2
Q ss_pred eEEeCChhhHHhhhhhhhHHHH--HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHH
Q 014677 57 VSIFQSTTDIANAYGIAEVGVM--LVSSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFAS 134 (420)
Q Consensus 57 v~~F~~S~~l~~AYGiaV~~~M--~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~ 134 (420)
-+.||--..+|-+-|+-....- .+..++++++...++|..-+-.+...+.+... .++. |.| +..+..
T Consensus 97 ~l~FkGGKGVAt~~Gvll~l~p~~~li~~~vf~~v~~itr~vSL~Si~a~~~~pi~--~~~~--------~~~-~~~~~~ 165 (222)
T PRK14397 97 FLGFRGGKAVATTIGVFIPLAFWQLLLSGILCLLVIWRSGFVSLGSLTLVTALPVM--LLIT--------GKW-KLIPLA 165 (222)
T ss_pred hhcCCCccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHH--------cch-HHHHHH
Confidence 4579999989888887765442 33333333444444554333333222111111 1221 222 233434
Q ss_pred HhHhhhhhhhhhHHHH
Q 014677 135 VFLCVMYIWNYGSVLK 150 (420)
Q Consensus 135 i~~~iM~~W~~G~~~~ 150 (420)
+++.++.+|+.-..++
T Consensus 166 ~~~a~lvi~rHr~NI~ 181 (222)
T PRK14397 166 LVVMALVYWSHRENIG 181 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566778887655444
No 44
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=22.56 E-value=7e+02 Score=25.19 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=32.2
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhhhhhhHHH
Q 014677 89 MLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYIWNYGSVL 149 (420)
Q Consensus 89 ~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~W~~G~~~ 149 (420)
++-.|.++....-.+.+.++..=-...++....++-..|+-+. +..++..+.+.++-.|.
T Consensus 130 ~Ys~~lK~~~~~d~l~va~~~~lr~~~G~~a~~~~~s~wll~~-~~~~~lfla~~kR~~E~ 189 (295)
T PRK12324 130 AYSFKLKHQPVLDVFCIASGFVLRAIAGGVAIGVPLSPWLLLC-TALLSLFLAAGKRKAEL 189 (295)
T ss_pred HhhHHhcCCchhhHHHHHHHHHHHHHHHHHHhCCCccHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3334444443333334444444467778888899999998433 33344444444444333
No 45
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=22.56 E-value=3.4e+02 Score=22.96 Aligned_cols=23 Identities=4% Similarity=0.132 Sum_probs=14.8
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHH
Q 014677 66 IANAYGIAEVGVMLVSSTLVTIV 88 (420)
Q Consensus 66 l~~AYGiaV~~~M~iTT~L~~~v 88 (420)
-+--|.++|....++.|+...+.
T Consensus 40 ~~~~~~~~v~~~~~~~~~~~l~~ 62 (144)
T PF01284_consen 40 SACGFALFVAVLSFLYTLIFLLL 62 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 34457777777777776655554
No 46
>PRK14402 membrane protein; Provisional
Probab=22.40 E-value=6.9e+02 Score=23.92 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=17.1
Q ss_pred EeCChhhHHhhhhhhhHHHHHH
Q 014677 59 IFQSTTDIANAYGIAEVGVMLV 80 (420)
Q Consensus 59 ~F~~S~~l~~AYGiaV~~~M~i 80 (420)
.||-....|.+-|+.....-..
T Consensus 100 ~FkGGKGvAt~~G~~l~l~p~~ 121 (198)
T PRK14402 100 RFRGGKGVATSFGTLLFLDPVL 121 (198)
T ss_pred CCCCchHHHHHHHHHHHHhHHH
Confidence 5999999999988887665433
No 47
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=22.25 E-value=3.5e+02 Score=22.86 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 014677 74 EVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFG 108 (420)
Q Consensus 74 V~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~ 108 (420)
=.+...|.|.|++++.+. -|++.+++.++.....
T Consensus 44 nIA~FcI~tvlfsFvfLs-~kl~t~~Af~~Ai~~S 77 (90)
T PF11674_consen 44 NIAFFCIFTVLFSFVFLS-LKLNTFWAFPLAILIS 77 (90)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 345677778888777764 5666666666554433
No 48
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=21.12 E-value=3.2e+02 Score=27.88 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=21.1
Q ss_pred hhcccc--CCccHHHHHHHHhHhhhhhhhhh
Q 014677 118 VLSKIA--EGGWLPLAFASVFLCVMYIWNYG 146 (420)
Q Consensus 118 ~l~K~~--~GGW~pl~ia~i~~~iM~~W~~G 146 (420)
...++| =|+|+|-++-+++...++.|..+
T Consensus 321 ~~g~lpp~la~Wlp~i~~~~~~~~l~~~~~~ 351 (366)
T PRK15120 321 GKGKLDPMIWMWAVNLIYLALAIVLNLWDTV 351 (366)
T ss_pred HCCCCChHHHHHHHHHHHHHHHHHHHhccch
Confidence 334444 38899988888888888888754
No 49
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=20.95 E-value=4e+02 Score=28.62 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=36.3
Q ss_pred EEeCChhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 014677 58 SIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFGSVE 111 (420)
Q Consensus 58 ~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~~id 111 (420)
+.|-+--.-+.||.+|-..+..+-++-+.-+..- ||+.........++++.+=
T Consensus 343 LSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~-~k~~~~~~~~L~~LY~~Ly 395 (430)
T PF06123_consen 343 LSLSEHIGFNLAYLIAALACIGLISLYLSSVLKS-WKRGLIFAGLLAALYGFLY 395 (430)
T ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHH
Confidence 3444444456899999888888877777766654 7877777666666666553
No 50
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=20.78 E-value=1.7e+02 Score=27.34 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=15.2
Q ss_pred CCccHHHHHHHHhHhhhhhhh
Q 014677 124 EGGWLPLAFASVFLCVMYIWN 144 (420)
Q Consensus 124 ~GGW~pl~ia~i~~~iM~~W~ 144 (420)
+..|+.+++|++.+.+++...
T Consensus 31 ~~~~l~~l~~~~~~~~~~~~~ 51 (199)
T PF10112_consen 31 HSFLLSLLIGAVAFAVVYLFG 51 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 457888888888877766543
No 51
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=20.61 E-value=5e+02 Score=25.69 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=39.6
Q ss_pred HHhhhhhhhHHHHHH-------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhhhccccCCccHH
Q 014677 66 IANAYGIAEVGVMLV-------SSTLVTIVMLLIWQTNLLLVLCFPLVFGSVELLYMSAVLSKIAEGGWLP 129 (420)
Q Consensus 66 l~~AYGiaV~~~M~i-------TT~L~~~v~~~~w~~~~~~~~~~~~~F~~id~~f~sa~l~K~~~GGW~p 129 (420)
+..-|++...-.+++ --.++.++...+.+++-++..+.++.+...=..+-+.+=.|-..+++++
T Consensus 25 is~~~~L~l~~~l~~a~~R~~vQL~~vG~vL~~if~~~~~~~~~l~~~~M~~~As~~a~~r~~~~~~~~~~ 95 (250)
T PF03649_consen 25 ISYRLRLGLERDLLIASLRMVVQLLLVGYVLHYIFKLNNPWLVILWLLVMILVASFTAARRAKLRPKGLFF 95 (250)
T ss_pred HHHHHccCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHhcccCccchhH
Confidence 334455555444443 3456667777777876555555556666666677777777777777666
No 52
>TIGR00930 2a30 K-Cl cotransporter.
Probab=20.57 E-value=1.5e+03 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCccHHHHHHHHhHhhhhh
Q 014677 100 VLCFPLVFGSVELLYMSAVLSKIAEGGWLPLAFASVFLCVMYI 142 (420)
Q Consensus 100 ~~~~~~~F~~id~~f~sa~l~K~~~GGW~pl~ia~i~~~iM~~ 142 (420)
.+.++.+.+++=++|+. +|.-.+++.++.++.|.
T Consensus 501 ~~sllG~l~c~~lmf~i---------~w~~ali~~~i~~~ly~ 534 (953)
T TIGR00930 501 WLSLLGASLCCAIMFLI---------SWWAALVAMVIALFLYK 534 (953)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 45556666666666665 47665666655544443
No 53
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=20.28 E-value=5e+02 Score=29.06 Aligned_cols=59 Identities=7% Similarity=0.062 Sum_probs=39.0
Q ss_pred chhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 014677 42 IPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTIVMLLIWQTNLLLVLCFPLVFG 108 (420)
Q Consensus 42 IP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~F~ 108 (420)
=|-.-+.++..+-.++ .+.-.||-+.+..+.+++.+-+....+. |+. ...++++.++++
T Consensus 4 YpPL~yyl~a~l~~l~------g~~~~Ay~l~~~L~~~l~~~~~Y~~~R~-~~~-~~~A~l~aiLyl 62 (616)
T PF10131_consen 4 YPPLPYYLGALLSLLF------GNPIVAYKLFIFLAFFLGGLGMYFLGRR-LGR-RKAAILAAILYL 62 (616)
T ss_pred CCcHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc-hhHHHHHHHHHH
Confidence 3445556666555555 3678899999988888888888777776 555 455555444443
No 54
>COG5393 Predicted membrane protein [Function unknown]
Probab=20.28 E-value=3.2e+02 Score=24.49 Aligned_cols=39 Identities=15% Similarity=0.098 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHH
Q 014677 71 GIAEVGVMLVSSTLVTIVMLLIWQTNLL-LVLCFPLVFGS 109 (420)
Q Consensus 71 GiaV~~~M~iTT~L~~~v~~~~w~~~~~-~~~~~~~~F~~ 109 (420)
|+++..+-+----|+.+|++.+|....+ ..+.-..+|.+
T Consensus 55 gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~v 94 (131)
T COG5393 55 GLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLV 94 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 5565555554455667777778887777 33333334433
No 55
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=20.18 E-value=5.5e+02 Score=27.05 Aligned_cols=29 Identities=34% Similarity=0.637 Sum_probs=18.2
Q ss_pred hhhccccCCccHHHHHHHHhHhh-hhhhhh
Q 014677 117 AVLSKIAEGGWLPLAFASVFLCV-MYIWNY 145 (420)
Q Consensus 117 a~l~K~~~GGW~pl~ia~i~~~i-M~~W~~ 145 (420)
+-+.-.--|||+-++.+.+++.+ +..|..
T Consensus 211 ~L~lT~SRg~wl~l~~~~~~~~~l~~~~~~ 240 (425)
T TIGR00947 211 CLLFTYSRGGWLGLLAALAVLLVLLLLWWS 240 (425)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHHHHhh
Confidence 33444567999988877766554 344543
Done!