Query 014677
Match_columns 420
No_of_seqs 228 out of 809
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 46.3 31 0.0011 33.7 6.3 59 17-82 301-359 (444)
2 2l6p_A PHAC1, PHAC2 and PHAD g 32.2 19 0.00064 30.6 1.8 21 390-412 30-50 (124)
3 2rdd_B UPF0092 membrane protei 26.9 88 0.003 20.8 4.1 19 125-143 1-19 (37)
4 3luu_A Uncharacterized protein 26.8 21 0.00071 28.9 1.1 15 389-403 34-48 (101)
5 3l1l_A Arginine/agmatine antip 26.1 1.5E+02 0.0052 28.6 7.5 11 17-27 303-313 (445)
6 2l6n_A Uncharacterized protein 25.7 28 0.00095 29.9 1.8 14 390-403 37-50 (132)
7 4djk_A Probable glutamate/gamm 24.6 2.9E+02 0.01 27.2 9.5 19 126-144 444-462 (511)
8 3rhw_A Avermectin-sensitive gl 21.7 1.5E+02 0.005 28.6 6.4 45 39-87 219-263 (347)
9 2o7g_A Probable RNA polymerase 19.8 35 0.0012 26.9 1.2 28 378-405 75-102 (112)
10 3rko_A NADH-quinone oxidoreduc 18.4 1.6E+02 0.0056 25.6 5.3 45 102-146 70-121 (147)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=46.27 E-value=31 Score=33.74 Aligned_cols=59 Identities=8% Similarity=0.061 Sum_probs=29.0
Q ss_pred HHHHcCCCCcceEEecCCccCCceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHHHH
Q 014677 17 QAMALGCFPRLKIIHTSRKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSS 82 (420)
Q Consensus 17 Qai~Lg~fPr~kI~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~iTT 82 (420)
..-+-|.+|+.= -++++ ++ |...-++.....++...+-+-+.+.+.++++...+..+..
T Consensus 301 a~a~dg~lP~~f-~~~~~--~~----P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 359 (444)
T 3gia_A 301 SLAKDGELPEFF-ERKVW--FK----STEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVI 359 (444)
T ss_dssp HHHHHSSCCSSC-CTTSC--CS----CTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHH-hCCCC--CC----CcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 344678999631 12221 22 6533333222222222234667787777776665555543
No 2
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=32.17 E-value=19 Score=30.56 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=14.7
Q ss_pred HHHHhhhccCCcccccCCCCCee
Q 014677 390 YAFLRRNCRAGAANMSVPHMNIL 412 (420)
Q Consensus 390 Y~fLRkN~R~~~~~L~IPh~~Ll 412 (420)
|.|||.||+++...-. .++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l 50 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVL 50 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCC
T ss_pred HHHHHhcCCCcccCCC--Ccccc
Confidence 6899999999765432 44444
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=26.87 E-value=88 Score=20.80 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=10.6
Q ss_pred CccHHHHHHHHhHhhhhhh
Q 014677 125 GGWLPLAFASVFLCVMYIW 143 (420)
Q Consensus 125 GGW~pl~ia~i~~~iM~~W 143 (420)
|||..++.-++++.+||..
T Consensus 1 ~~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4566555555555666443
No 4
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=26.83 E-value=21 Score=28.87 Aligned_cols=15 Identities=20% Similarity=0.518 Sum_probs=10.5
Q ss_pred HHHHHhhhccCCccc
Q 014677 389 FYAFLRRNCRAGAAN 403 (420)
Q Consensus 389 ~Y~fLRkN~R~~~~~ 403 (420)
=|.|||.||+.+...
T Consensus 34 ~~~wLRd~c~ca~c~ 48 (101)
T 3luu_A 34 TFEHLRVECPCAECK 48 (101)
T ss_dssp EHHHHHHTCCCC---
T ss_pred CHHHHHhhCCChhhc
Confidence 488999999976654
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=26.08 E-value=1.5e+02 Score=28.63 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=7.6
Q ss_pred HHHHcCCCCcc
Q 014677 17 QAMALGCFPRL 27 (420)
Q Consensus 17 Qai~Lg~fPr~ 27 (420)
..-+-|.+|+.
T Consensus 303 ~~a~dg~lP~~ 313 (445)
T 3l1l_A 303 AAADDGLFPPI 313 (445)
T ss_dssp HHHHTTSSCGG
T ss_pred HHHhCCCCcHH
Confidence 44567899963
No 6
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=25.70 E-value=28 Score=29.86 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=11.8
Q ss_pred HHHHhhhccCCccc
Q 014677 390 YAFLRRNCRAGAAN 403 (420)
Q Consensus 390 Y~fLRkN~R~~~~~ 403 (420)
|.|||.||+.+...
T Consensus 37 ~~wLRd~Cpcaec~ 50 (132)
T 2l6n_A 37 CELLRVYSPSAEVH 50 (132)
T ss_dssp HHHHHHSCSCSSSS
T ss_pred HHHHHhcCCCcccC
Confidence 79999999987654
No 7
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=24.62 E-value=2.9e+02 Score=27.17 Aligned_cols=19 Identities=11% Similarity=0.182 Sum_probs=11.5
Q ss_pred ccHHHHHHHHhHhhhhhhh
Q 014677 126 GWLPLAFASVFLCVMYIWN 144 (420)
Q Consensus 126 GW~pl~ia~i~~~iM~~W~ 144 (420)
.|...++++++......|-
T Consensus 444 ~~~~~~~~~~~~~~~i~~~ 462 (511)
T 4djk_A 444 MYVELLVVSFLVVLALPFI 462 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777776666665544443
No 8
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=21.70 E-value=1.5e+02 Score=28.61 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=25.2
Q ss_pred ceechhHHHHHHHHhheeeEEeCChhhHHhhhhhhhHHHHHHHHHHHHH
Q 014677 39 QIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLVTI 87 (420)
Q Consensus 39 QIYIP~vNw~Lmi~~i~vv~~F~~S~~l~~AYGiaV~~~M~iTT~L~~~ 87 (420)
|+|+|.+ ++.++..+..+=..++.++==+++++..+.+|+++..+
T Consensus 219 ~l~iP~~----li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~ 263 (347)
T 3rhw_A 219 QLYIPSC----MLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGI 263 (347)
T ss_dssp HTHHHHH----HHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehhHH----HHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHH
Confidence 6889986 22223333333344444444567777777777766654
No 9
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=19.77 E-value=35 Score=26.88 Aligned_cols=28 Identities=7% Similarity=0.018 Sum_probs=15.7
Q ss_pred CChhHHHHHHHHHHHHhhhccCCccccc
Q 014677 378 SFFLKKLVINYFYAFLRRNCRAGAANMS 405 (420)
Q Consensus 378 Ss~~Kk~vin~~Y~fLRkN~R~~~~~L~ 405 (420)
.+|+.+++.|.+.+++|++.|.+.....
T Consensus 75 ~~wl~~i~~n~~~d~~R~~~~~~~~~~~ 102 (112)
T 2o7g_A 75 RTWLLAIARHVVADHIRHVRSRPRTTRG 102 (112)
T ss_dssp HHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 4689999999999999999887654433
No 10
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=18.41 E-value=1.6e+02 Score=25.56 Aligned_cols=45 Identities=29% Similarity=0.496 Sum_probs=26.6
Q ss_pred HHHHHHHH--HHHHHHHhhhccccCCccHHHHHH-----HHhHhhhhhhhhh
Q 014677 102 CFPLVFGS--VELLYMSAVLSKIAEGGWLPLAFA-----SVFLCVMYIWNYG 146 (420)
Q Consensus 102 ~~~~~F~~--id~~f~sa~l~K~~~GGW~pl~ia-----~i~~~iM~~W~~G 146 (420)
++.++|+. +|.+|+---...+.+-||+.+... ..++...+-|++|
T Consensus 70 LiAilFlIFDvEi~~L~Pwa~~~~~~~~~~~~~~~~Fl~iL~~Gl~yEW~~G 121 (147)
T 3rko_A 70 LVAMFFVIFDVEALYLFAWSTSIRESGWVGFVEAAIFIFVLLAGLVYLVRIG 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455555 577887655556666677654433 3334456788888
Done!