Query 014677
Match_columns 420
No_of_seqs 228 out of 809
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 15:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014677.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014677hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 33.8 10 0.00076 22.1 1.8 20 126-145 5-24 (27)
2 d1or7a2 a.177.1.1 (A:-1-111) S 22.3 22 0.0016 26.5 2.5 24 378-401 73-96 (113)
3 d1jb0i_ f.23.17.1 (I:) Subunit 14.5 4.5 0.00033 25.9 -2.8 19 40-58 13-31 (38)
4 d1ppjd2 f.23.11.1 (D:196-241) 12.4 96 0.007 20.2 3.5 24 70-93 9-32 (46)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 11.8 54 0.0039 24.2 2.3 26 224-249 57-82 (103)
6 d2a65a1 f.54.1.1 (A:5-513) Na( 11.6 1.8E+02 0.013 27.0 6.8 50 103-153 379-431 (509)
7 d1f2qa2 b.1.1.4 (A:86-174) IgE 11.4 66 0.0048 22.6 2.6 30 223-252 47-76 (89)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 10.9 4.2E+02 0.03 22.1 8.9 23 136-158 423-445 (447)
9 d1f97a1 b.1.1.1 (A:27-128) Jun 9.8 50 0.0036 23.4 1.4 25 227-251 67-91 (102)
10 d1vlfn1 b.3.5.1 (N:196-274) Tr 9.0 1.3E+02 0.0098 21.0 3.6 27 222-251 35-62 (79)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=33.82 E-value=10 Score=22.11 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=16.1
Q ss_pred ccHHHHHHHHhHhhhhhhhh
Q 014677 126 GWLPLAFASVFLCVMYIWNY 145 (420)
Q Consensus 126 GW~pl~ia~i~~~iM~~W~~ 145 (420)
||+.|+.-+.-..-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888888877888888854
No 2
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=22.32 E-value=22 Score=26.55 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHHHhhhccCCc
Q 014677 378 SFFLKKLVINYFYAFLRRNCRAGA 401 (420)
Q Consensus 378 Ss~~Kk~vin~~Y~fLRkN~R~~~ 401 (420)
.+|+.+++-|.+++++|++.|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998653
No 3
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=14.54 E-value=4.5 Score=25.89 Aligned_cols=19 Identities=26% Similarity=0.738 Sum_probs=14.3
Q ss_pred eechhHHHHHHHHhheeeE
Q 014677 40 IYIPVINWFLMIMCVVVVS 58 (420)
Q Consensus 40 IYIP~vNw~Lmi~~i~vv~ 58 (420)
|.||.+-|++-+-++.+..
T Consensus 13 I~iPvv~wl~p~vvMglLF 31 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLF 31 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 7899999998776655443
No 4
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.39 E-value=96 Score=20.25 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 014677 70 YGIAEVGVMLVSSTLVTIVMLLIW 93 (420)
Q Consensus 70 YGiaV~~~M~iTT~L~~~v~~~~w 93 (420)
-|+-|.+.+.+-|.++.++-+..|
T Consensus 9 mG~Kv~~~l~~l~~l~yy~KR~~W 32 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVYAMKRHKW 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477777777777777777666555
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.77 E-value=54 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=20.7
Q ss_pred CceEEEEEecCCCccEEEEEEEEeee
Q 014677 224 EERFLFRRVGPKDYHMFRCVTRYGYK 249 (420)
Q Consensus 224 ~eR~~v~~~~~~~~~~yr~v~ryGy~ 249 (420)
+..+.|..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 34567888887888999999988664
No 6
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=11.59 E-value=1.8e+02 Score=27.01 Aligned_cols=50 Identities=16% Similarity=0.345 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhhccccC---CccHHHHHHHHhHhhhhhhhhhHHHHHHH
Q 014677 103 FPLVFGSVELLYMSAVLSKIAE---GGWLPLAFASVFLCVMYIWNYGSVLKYRS 153 (420)
Q Consensus 103 ~~~~F~~id~~f~sa~l~K~~~---GGW~pl~ia~i~~~iM~~W~~G~~~~~~~ 153 (420)
..++++..=+.+++.+.....| ++ +.+.+.+.+.++...|-||.++..+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 379 AAIVFFSAHLVMFLNKSLDEMDFWAGT-IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHBTTHHHHHHHHTTT-HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred eEEEEhhhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 3344444444444444333322 33 46677788889999999999887664
No 7
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.37 E-value=66 Score=22.56 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCCccEEEEEEEEeeeccc
Q 014677 223 LEERFLFRRVGPKDYHMFRCVTRYGYKDVR 252 (420)
Q Consensus 223 ~~eR~~v~~~~~~~~~~yr~v~ryGy~d~~ 252 (420)
....+.+..+...+-|.|+|.++.|+.+..
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~ 76 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDYE 76 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCeE
Confidence 445688888887788999999998876543
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.89 E-value=4.2e+02 Score=22.08 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=11.0
Q ss_pred hHhhhhhhhhhHHHHHHHHHhcC
Q 014677 136 FLCVMYIWNYGSVLKYRSEVREK 158 (420)
Q Consensus 136 ~~~iM~~W~~G~~~~~~~~~~~~ 158 (420)
...+++.....++++.+...++.
T Consensus 423 ~~~~~~~~~~~~~~r~~~~~~e~ 445 (447)
T d1pw4a_ 423 AVILLIVVMIGEKRRHEQLLQEL 445 (447)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGS
T ss_pred HHHHHHHHHHhccccHHHHHHhC
Confidence 33344445555555555444443
No 9
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.82 E-value=50 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=18.9
Q ss_pred EEEEEecCCCccEEEEEEEEeeecc
Q 014677 227 FLFRRVGPKDYHMFRCVTRYGYKDV 251 (420)
Q Consensus 227 ~~v~~~~~~~~~~yr~v~ryGy~d~ 251 (420)
+.+..+...+.|.|+|.++..+...
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSSS
T ss_pred EEEeECCccCCEEEEEEEEECCCCE
Confidence 4566777778899999998766543
No 10
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=9.04 E-value=1.3e+02 Score=21.05 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=22.0
Q ss_pred CCCceEEEEEecCCCccEEEEEEEE-eeecc
Q 014677 222 RLEERFLFRRVGPKDYHMFRCVTRY-GYKDV 251 (420)
Q Consensus 222 ~~~eR~~v~~~~~~~~~~yr~v~ry-Gy~d~ 251 (420)
...=+|.++.+.+ |-|.+.+.| ||...
T Consensus 35 d~~G~F~f~~l~~---G~Y~l~is~~Gy~~~ 62 (79)
T d1vlfn1 35 NFFGEFKFDALDN---GEYTVEIDADGKSYS 62 (79)
T ss_dssp CTTSEEEEEEECS---EEEEEEEEETTEEEE
T ss_pred CCCCcEEEEecCC---CCEEEEEEEecccce
Confidence 4556799999987 789999999 88754
Done!