Query 014678
Match_columns 420
No_of_seqs 44 out of 46
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 15:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oqj_C Peptide 2G12.1 (ACPPSHV 45.1 5 0.00017 26.5 0.2 14 297-310 5-18 (26)
2 2kz2_A Calmodulin, CAM; TR2C, 30.5 57 0.002 24.5 4.2 56 349-415 27-82 (94)
3 2d28_C XPSE, type II secretion 30.5 14 0.00048 30.2 0.7 24 362-385 9-32 (149)
4 2pmy_A RAS and EF-hand domain- 27.8 51 0.0017 24.4 3.4 54 349-415 25-78 (91)
5 1srz_A Gamma-aminobutyric acid 27.4 28 0.00097 25.3 1.9 20 126-146 49-68 (68)
6 3ktz_A Ribosome-inactivating p 23.7 35 0.0012 32.1 2.2 41 144-184 4-44 (251)
7 4aor_D Trypsin inhibitor 3; hy 21.1 20 0.00067 25.5 -0.1 15 301-315 19-33 (37)
8 3ctv_A HBD-10, 3-hydroxyacyl-C 18.2 75 0.0026 25.4 2.8 35 351-385 18-52 (110)
9 1qjt_A EH1, epidermal growth f 16.5 1.6E+02 0.0056 22.7 4.3 52 351-415 11-62 (99)
10 1jfj_A Ehcabp, calcium-binding 16.1 1E+02 0.0035 22.7 2.9 48 353-415 77-124 (134)
No 1
>2oqj_C Peptide 2G12.1 (ACPPSHVLDMRSGTCLAAEGK); immunoglobulin fold, immune system; 2.80A {Homo sapiens}
Probab=45.14 E-value=5 Score=26.50 Aligned_cols=14 Identities=36% Similarity=0.904 Sum_probs=11.6
Q ss_pred cccccCCCCCcCCC
Q 014678 297 NDILDMPEGSCFPR 310 (420)
Q Consensus 297 ND~LylrEGScfPR 310 (420)
..+||||.|+|+-.
T Consensus 5 shvldmrsgtclaa 18 (26)
T 2oqj_C 5 SHVLDMRSGTCLAA 18 (26)
T ss_pred hheeeccCCceEee
Confidence 35899999999864
No 2
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=30.53 E-value=57 Score=24.47 Aligned_cols=56 Identities=21% Similarity=0.366 Sum_probs=39.7
Q ss_pred chHHHHHHHHHHHhchhhhHhcCCCChhchHHHHhCCCCcEEEeccchHHHHHHHHHhhhcCCCceE
Q 014678 349 PLELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGIL 415 (420)
Q Consensus 349 ~~qiwd~lFk~ce~~G~~Ll~~G~It~~Diee~~~~k~~kvi~vgLPAy~lL~~LL~SaKanS~Gll 415 (420)
..+-+...|+.+..+| .|.|+.+|+.++++.-+. .+ .-.-++.+++.+-.|.+|-+
T Consensus 27 ~~~~l~~~F~~~D~d~-----~G~I~~~El~~~l~~~g~-----~~-~~~e~~~l~~~~D~d~dG~I 82 (94)
T 2kz2_A 27 SEEEIREAFRVEDKDG-----NGYISAAELRHVMTNLGE-----KL-TDEEVDEMIREADIDGDGQV 82 (94)
T ss_dssp CHHHHHHHHHHHCTTC-----CSCBCHHHHHHHHHHHTC-----CC-CHHHHHHHHHHHCTTCSSSB
T ss_pred HHHHHHHHHHHHCCCC-----cCcCCHHHHHHHHHHhCC-----CC-CHHHHHHHHHHhCCCCCCcE
Confidence 4455788899887665 699999999999876432 12 23456778888877777753
No 3
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=30.50 E-value=14 Score=30.22 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=19.7
Q ss_pred hchhhhHhcCCCChhchHHHHhCC
Q 014678 362 RHGEIWVSEGLITAKDIEDAKSNS 385 (420)
Q Consensus 362 ~~G~~Ll~~G~It~~Diee~~~~k 385 (420)
.-|+.|+++|+||.+++++++...
T Consensus 9 ~lg~~Lv~~g~it~~ql~~al~~~ 32 (149)
T 2d28_C 9 RIVEALLERRRLKDTDLVRARQLQ 32 (149)
T ss_dssp HHHHHHHHTTSSCHHHHHHCCC--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 458999999999999999987654
No 4
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=27.82 E-value=51 Score=24.39 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHhchhhhHhcCCCChhchHHHHhCCCCcEEEeccchHHHHHHHHHhhhcCCCceE
Q 014678 349 PLELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGIL 415 (420)
Q Consensus 349 ~~qiwd~lFk~ce~~G~~Ll~~G~It~~Diee~~~~k~~kvi~vgLPAy~lL~~LL~SaKanS~Gll 415 (420)
..+-+...|+.+..+| .|.|+.+|+.++++.-+ ++ -.-++.+++.+-.|.+|-|
T Consensus 25 ~~~~l~~~F~~~D~d~-----~G~I~~~El~~~l~~~g-------~~-~~~~~~~~~~~D~d~dg~I 78 (91)
T 2pmy_A 25 ELARLRSVFAACDANR-----SGRLEREEFRALCTELR-------VR-PADAEAVFQRLDADRDGAI 78 (91)
T ss_dssp HHHHHHHHHHHHCTTC-----SSSEEHHHHHHHHHHTT-------CC-HHHHHHHHHHHCTTCSSEE
T ss_pred HHHHHHHHHHHHCCCC-----CCCCcHHHHHHHHHHcC-------cC-HHHHHHHHHHhCCCCCCCE
Confidence 4556888999997776 78999999999987653 22 3457788888877777754
No 5
>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B) receptor, CIS-trans isomerization, CCP module, sushi domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB: 1ss2_A
Probab=27.42 E-value=28 Score=25.34 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.4
Q ss_pred ceEEEEeeCccceeeceeEEE
Q 014678 126 DIFHCFYDGTWSTIKHSFTIV 146 (420)
Q Consensus 126 k~~HCf~DGTwsTI~gSCTVV 146 (420)
+..+|- ||+||.-.-.|..|
T Consensus 49 ~~~~C~-~g~Ws~~~P~C~~i 68 (68)
T 1srz_A 49 SRSVCS-QGQWSTPKPHCQVN 68 (68)
T ss_dssp CEEEEE-TTEESSCCCCEEEC
T ss_pred CcCEEC-CCEEeCCCCEeeEC
Confidence 578998 99999887788654
No 6
>3ktz_A Ribosome-inactivating protein gelonin; plant seeds, glycosidase, disulfide bond, glycoprotein, hydrolase, plant defense; HET: NAG; 1.60A {Gelonium multiflorum} SCOP: d.165.1.0 PDB: 3ku0_A*
Probab=23.67 E-value=35 Score=32.10 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=31.2
Q ss_pred EEEeeccccccccchhhhHHHhhcCCCCCceeEEEEecchh
Q 014678 144 TIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIRLLYIPG 184 (420)
Q Consensus 144 TVVrDf~D~cfHSYfs~mdeLr~~~~~~~~p~eIrL~~lPg 184 (420)
||.=|...-.--+|-++|++||+.+.+..+.++|.++.-|.
T Consensus 4 ~v~f~~~~at~~~Y~~FI~~LR~~l~~~~~~~~iPvL~~~~ 44 (251)
T 3ktz_A 4 TVSFSTKGATYITYVNFLNELRVKLKPEGNSHGIPLLRKKC 44 (251)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHTCCCSEETTEEBCCSCC
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHhccCCccCCceecCCCC
Confidence 34445555555789999999999998777788999987753
No 7
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=21.13 E-value=20 Score=25.50 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=11.8
Q ss_pred cCCCCCcCCCccccc
Q 014678 301 DMPEGSCFPRPQYRK 315 (420)
Q Consensus 301 ylrEGScfPRP~YRk 315 (420)
|--.|||.|.|+-|-
T Consensus 19 ~ccsg~cvphp~lri 33 (37)
T 4aor_D 19 QCCSGACVPHPILRI 33 (37)
T ss_dssp GBTTSCEEECSSBSS
T ss_pred ccccccccCCCeeEE
Confidence 345699999999883
No 8
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}
Probab=18.24 E-value=75 Score=25.40 Aligned_cols=35 Identities=17% Similarity=-0.011 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhchhhhHhcCCCChhchHHHHhCC
Q 014678 351 ELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNS 385 (420)
Q Consensus 351 qiwd~lFk~ce~~G~~Ll~~G~It~~Diee~~~~k 385 (420)
.|-+.++-..-...-.+++||+.|++|||.....+
T Consensus 18 fi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g 52 (110)
T 3ctv_A 18 INPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLG 52 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHc
Confidence 35556666666667789999999999999988743
No 9
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=16.54 E-value=1.6e+02 Score=22.68 Aligned_cols=52 Identities=23% Similarity=0.406 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhchhhhHhcCCCChhchHHHHhCCCCcEEEeccchHHHHHHHHHhhhcCCCceE
Q 014678 351 ELLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGIL 415 (420)
Q Consensus 351 qiwd~lFk~ce~~G~~Ll~~G~It~~Diee~~~~k~~kvi~vgLPAy~lL~~LL~SaKanS~Gll 415 (420)
+-|...|+.+-.+| +|.|+.+|+.+.+++- |+|. .-++.+++.+-.|.+|-+
T Consensus 11 ~~~~~~F~~~D~d~-----dG~Is~~el~~~l~~~-------~l~~-~~l~~i~~~~D~d~dG~i 62 (99)
T 1qjt_A 11 PVYEKYYRQVEAGN-----TGRVLALDAAAFLKKS-------GLPD-LILGKIWDLADTDGKGVL 62 (99)
T ss_dssp THHHHHHHHHCCTT-----SSCCCSHHHHHHHHTS-------SSCH-HHHHHHHHHHCCSSSSSC
T ss_pred HHHHHHHHHHCCCC-----CCcCCHHHHHHHHHHc-------CCCH-HHHHHHHHHHCCCCCCcC
Confidence 34788999997776 6999999999888753 3553 456777777777777753
No 10
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Probab=16.13 E-value=1e+02 Score=22.69 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=37.9
Q ss_pred HHHHHHHHHhchhhhHhcCCCChhchHHHHhCCCCcEEEeccchHHHHHHHHHhhhcCCCceE
Q 014678 353 LERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGIL 415 (420)
Q Consensus 353 wd~lFk~ce~~G~~Ll~~G~It~~Diee~~~~k~~kvi~vgLPAy~lL~~LL~SaKanS~Gll 415 (420)
+..+|+.+..+| .|.|+.+|+.+.+..-+.+. ++.+++.+-.|.+|-+
T Consensus 77 ~~~~f~~~D~d~-----~G~i~~~e~~~~l~~~~~~~----------~~~~~~~~D~~~dg~i 124 (134)
T 1jfj_A 77 LKVLYKLMDVDG-----DGKLTKEEVTSFFKKHGIEK----------VAEQVMKADANGDGYI 124 (134)
T ss_dssp HHHHHHHHCCSS-----SSEEEHHHHHHHHTTTTCHH----------HHHHHHHHHCSSSSEE
T ss_pred HHHHHHHHCCCC-----CCccCHHHHHHHHHHhCHHH----------HHHHHHHhCCCCCCcE
Confidence 778899887665 58999999999998654322 7888888888888864
Done!