Query 014678
Match_columns 420
No_of_seqs 44 out of 46
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 15:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014678.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014678hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2z3qb1 g.18.1.1 (B:1-78) Inte 45.3 4.2 0.00031 29.7 1.7 25 122-146 37-61 (78)
2 d1jb7a2 b.40.4.3 (A:205-328) T 39.3 2 0.00015 35.5 -1.0 11 289-299 29-39 (124)
3 d2d28c1 d.52.10.1 (C:1-149) Ty 31.9 6 0.00044 30.9 0.7 25 362-386 9-33 (149)
4 d1f0ya1 a.100.1.3 (A:204-302) 22.2 32 0.0023 25.0 3.3 32 353-384 4-35 (99)
5 d2o39c1 g.18.1.1 (C:1-62) CD46 22.0 15 0.0011 25.3 1.2 19 126-144 42-61 (62)
6 d1md8a2 g.18.1.1 (A:358-433) C 19.2 8 0.00058 27.7 -0.8 21 126-146 51-71 (76)
7 d1f44a1 a.60.9.1 (A:20-129) Cr 17.2 34 0.0025 25.5 2.4 30 352-384 29-58 (110)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 16.8 42 0.003 22.0 2.4 26 245-270 4-30 (34)
9 d1qjta_ a.39.1.6 (A:) Eps15 {M 16.5 84 0.0062 22.9 4.6 50 352-414 12-61 (99)
10 d1a0pa1 a.60.9.1 (A:3-100) Rec 16.1 44 0.0032 24.1 2.8 30 353-385 31-60 (98)
No 1
>d2z3qb1 g.18.1.1 (B:1-78) Interleukin-15 receptor subunit alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.32 E-value=4.2 Score=29.73 Aligned_cols=25 Identities=8% Similarity=0.181 Sum_probs=20.1
Q ss_pred CcccceEEEEeeCccceeeceeEEE
Q 014678 122 GKTNDIFHCFYDGTWSTIKHSFTIV 146 (420)
Q Consensus 122 g~~~k~~HCf~DGTwsTI~gSCTVV 146 (420)
+.++....|-.||||++.+=+|..+
T Consensus 37 ~~~s~~~~C~~ng~w~~~~~~c~~i 61 (78)
T d2z3qb1 37 AGTSSLTECVLNKATNVAHWTTPSL 61 (78)
T ss_dssp TTCCCEEEEEEETTTTEEEECCCCC
T ss_pred cCCcCcEEeECCCCcccccccCCCC
Confidence 4444588999999999999988654
No 2
>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}
Probab=39.31 E-value=2 Score=35.46 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=9.1
Q ss_pred hhhhhhccccc
Q 014678 289 LSIYDEYSNDI 299 (420)
Q Consensus 289 va~fDEYtND~ 299 (420)
+.+.||||||+
T Consensus 29 I~e~DeYTnel 39 (124)
T d1jb7a2 29 VHELDEYTNEL 39 (124)
T ss_dssp EEECSSSEEEE
T ss_pred eecchhhccee
Confidence 45789999996
No 3
>d2d28c1 d.52.10.1 (C:1-149) Type II secretion ATPase XpsE {Xanthomonas campestris [TaxId: 339]}
Probab=31.86 E-value=6 Score=30.88 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=19.5
Q ss_pred hchhhhHhcCCCChhchHHHHhCCC
Q 014678 362 RHGEIWVSEGLITAKDIEDAKSNSG 386 (420)
Q Consensus 362 ~~G~~Ll~~G~It~~Diee~~~~k~ 386 (420)
+-|+.|++.|+||.+|+++++...+
T Consensus 9 ~i~~~Lv~~g~is~~~l~~a~~~~~ 33 (149)
T d2d28c1 9 RIVEALLERRRLKDTDLVRARQLQA 33 (149)
T ss_dssp HHHHHHHHTTSSCHHHHHHCCC---
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHhh
Confidence 4588999999999999999887664
No 4
>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.17 E-value=32 Score=24.98 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=25.0
Q ss_pred HHHHHHHHHhchhhhHhcCCCChhchHHHHhC
Q 014678 353 LERLFKECQRHGEIWVSEGLITAKDIEDAKSN 384 (420)
Q Consensus 353 wd~lFk~ce~~G~~Ll~~G~It~~Diee~~~~ 384 (420)
.+.++-..-...-.|++||+.|++|++.....
T Consensus 4 ~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~ 35 (99)
T d1f0ya1 4 VNRLLVPYLMEAIRLYERGDASKEDIDTAMKL 35 (99)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhc
Confidence 44555555566778999999999999998765
No 5
>d2o39c1 g.18.1.1 (C:1-62) CD46 (membrane cofactor protein, MCP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.02 E-value=15 Score=25.25 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=14.8
Q ss_pred ceEEEEeeCccceee-ceeE
Q 014678 126 DIFHCFYDGTWSTIK-HSFT 144 (420)
Q Consensus 126 k~~HCf~DGTwsTI~-gSCT 144 (420)
.-+.|--|||||-+. -.||
T Consensus 42 ~~i~C~~ng~WSp~~~~~C~ 61 (62)
T d2o39c1 42 THTICDRNHTWLPVSDDACY 61 (62)
T ss_dssp SEEECCSSSSCCCCCSTTEE
T ss_pred CEEEECCCCEECCCCCCCcc
Confidence 357899999999764 5676
No 6
>d1md8a2 g.18.1.1 (A:358-433) Complement C1R protease domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.24 E-value=8 Score=27.72 Aligned_cols=21 Identities=19% Similarity=0.556 Sum_probs=17.9
Q ss_pred ceEEEEeeCccceeeceeEEE
Q 014678 126 DIFHCFYDGTWSTIKHSFTIV 146 (420)
Q Consensus 126 k~~HCf~DGTwsTI~gSCTVV 146 (420)
.-++|--||+||--..+|.++
T Consensus 51 ~~~tC~~~G~Ws~~~p~C~~~ 71 (76)
T d1md8a2 51 GVYTCTAQGIWKNEQKGEKIP 71 (76)
T ss_dssp CEEEECTTSSEECSSCCSSCC
T ss_pred ceeeecCCCcCCCCCCCccCC
Confidence 458999999999988888654
No 7
>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=17.15 E-value=34 Score=25.51 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhchhhhHhcCCCChhchHHHHhC
Q 014678 352 LLERLFKECQRHGEIWVSEGLITAKDIEDAKSN 384 (420)
Q Consensus 352 iwd~lFk~ce~~G~~Ll~~G~It~~Diee~~~~ 384 (420)
=|..+...|+.+|...+. ++++|+++|+..
T Consensus 29 dl~~f~~w~~~~~~~~l~---~~~~~v~~yl~~ 58 (110)
T d1f44a1 29 VCRSWAAWCKLNNRKWFP---AEPEDVRDYLLY 58 (110)
T ss_dssp HHHHHHHHHHHTTCCTTT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccc---hhhhHHHHHHHH
Confidence 388999999999988765 699999998864
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=16.78 E-value=42 Score=21.99 Aligned_cols=26 Identities=42% Similarity=0.774 Sum_probs=18.1
Q ss_pred HHHHHHHHHH-HHHHHHHhhhhhceeE
Q 014678 245 LWPLAVVGAV-LGSMVTSIFLGAYAGV 270 (420)
Q Consensus 245 LWPl~Vvgav-l~si~sS~flG~yaaV 270 (420)
||=.+.++.+ .-+++.-||-|.|+++
T Consensus 4 LWlv~tv~G~~vi~~vG~FfYGsYsGl 30 (34)
T d2axtj1 4 LWIVATVAGMGVIVIVGLFFYGAYAGL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred EEEeeehhhhhhHhheeeeeeeeeccc
Confidence 5666655544 3467888899999874
No 9
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.48 E-value=84 Score=22.89 Aligned_cols=50 Identities=22% Similarity=0.382 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhchhhhHhcCCCChhchHHHHhCCCCcEEEeccchHHHHHHHHHhhhcCCCce
Q 014678 352 LLERLFKECQRHGEIWVSEGLITAKDIEDAKSNSGSQVVSIGLPAYCLLQALLRSAMANSPGI 414 (420)
Q Consensus 352 iwd~lFk~ce~~G~~Ll~~G~It~~Diee~~~~k~~kvi~vgLPAy~lL~~LL~SaKanS~Gl 414 (420)
+++.+|+.|..+| .|.|+.+++.+.+++. ||| -..|+.+.+-+=.|.+|-
T Consensus 12 ~y~~~F~~~D~d~-----~G~i~~~e~~~~l~~s-------~L~-~~~L~~i~~~~D~d~dG~ 61 (99)
T d1qjta_ 12 VYEKYYRQVEAGN-----TGRVLALDAAAFLKKS-------GLP-DLILGKIWDLADTDGKGV 61 (99)
T ss_dssp HHHHHHHHHCCTT-----SSCCCSHHHHHHHHTS-------SSC-HHHHHHHHHHHCCSSSSS
T ss_pred HHHHHHHHHCCCC-----CCcccHHHHHHHHHHc-------CCc-HHHHHHHHHHHcCCCCCc
Confidence 6889999997764 6888888888888754 355 345666666665555553
No 10
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=16.09 E-value=44 Score=24.13 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=23.7
Q ss_pred HHHHHHHHHhchhhhHhcCCCChhchHHHHhCC
Q 014678 353 LERLFKECQRHGEIWVSEGLITAKDIEDAKSNS 385 (420)
Q Consensus 353 wd~lFk~ce~~G~~Ll~~G~It~~Diee~~~~k 385 (420)
++.+++.|+.+|..+. -+|.+|+++|+..-
T Consensus 31 l~~f~~~l~~~~~~~~---~i~~~~i~~yl~~l 60 (98)
T d1a0pa1 31 LSMMVEWLHHRGLTLA---TAQSDDLQALLAER 60 (98)
T ss_dssp HHHHHHHHHHTSCCTT---TCCHHHHHHHHHSC
T ss_pred HHHHHHHHHhcccccc---cccHHHHHHHHHHH
Confidence 5677888999887654 38999999998654
Done!