BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014679
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/413 (57%), Positives = 290/413 (70%), Gaps = 18/413 (4%)
Query: 24 QTSFRPKALVLRVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNK 83
Q SFRP ALV+ V KD +TLQYVT I QRTPLV L V LGG LWVDC++ YVSST +
Sbjct: 1 QPSFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYR 60
Query: 84 TARCGSAQCNLANA-----------KXXXXXXXXXXPDNPISNTGTHGDIRIDVLSIQST 132
RC ++QC+L+ + P+NP+ NT T G++ DV+S++ST
Sbjct: 61 PVRCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVEST 120
Query: 133 DGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGRSKVALPSQLAAAFSLKRKFAL 192
DG + GR VTVP FIF C +LQ LASGVVG+AGLGR+++ALPSQ A+AFS KRKFA+
Sbjct: 121 DGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAM 180
Query: 193 CLS--PFDDGAIVFGDGPYYDLNNFDVS-KNLKYTPLFINKVNT-ASGFLGEPSVEYFIG 248
CLS + I+FG+ PY L N VS K L YTPL N V+T A+ GEPSVEYFIG
Sbjct: 181 CLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIG 240
Query: 249 VTSVHVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAF--ASAMPKV 306
V S+ +N K V LN +LLSI + G+GGTKIST+NPYTVLETSIYKA+ +AF SA +
Sbjct: 241 VKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNI 300
Query: 307 ARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQNSMVQIGGDALCLG 366
RVA VAPFGACF +I TR+GP VP IDLVLQ+++VVW+I G NSMV I + +CLG
Sbjct: 301 TRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLG 360
Query: 367 FVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLLFERATCT-FNFTS 418
VDGG N RTSIVIG QLE+NL+QFDLATSR+GFS +LL R TC FNFTS
Sbjct: 361 VVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFNFTS 413
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 445 bits (1144), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/411 (57%), Positives = 289/411 (70%), Gaps = 18/411 (4%)
Query: 26 SFRPKALVLRVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTA 85
SFRP ALV+ V KD +TLQYVT I QRTPLV L V LGG LWVDC++ YVSST +
Sbjct: 3 SFRPSALVVPVKKDASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNYVSSTYRPV 62
Query: 86 RCGSAQCNLANA-----------KXXXXXXXXXXPDNPISNTGTHGDIRIDVLSIQSTDG 134
RC ++QC+L+ + P+NP+ NT T G++ DV+S++STDG
Sbjct: 63 RCRTSQCSLSGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDG 122
Query: 135 RNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGRSKVALPSQLAAAFSLKRKFALCL 194
+ GR VTVP FIF C +LQ LASGVVG+AGLGR+++ALPSQ A+AFS KRKFA+CL
Sbjct: 123 SSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL 182
Query: 195 S--PFDDGAIVFGDGPYYDLNNFDVS-KNLKYTPLFINKVNT-ASGFLGEPSVEYFIGVT 250
S + I+FG+ PY L N VS K L YTPL N V+T A+ GEPSVEYFIGV
Sbjct: 183 SGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVK 242
Query: 251 SVHVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAF--ASAMPKVAR 308
S+ +N K V LN +LLSI + G+GGTKIST+NPYTVLETSIYKA+ +AF SA + R
Sbjct: 243 SIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITR 302
Query: 309 VAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQNSMVQIGGDALCLGFV 368
VA VAPFGACF +I TR+GP VP IDLVLQ+++VVW+I G NSMV I + +CLG V
Sbjct: 303 VASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVV 362
Query: 369 DGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLLFERATCT-FNFTS 418
DGG N RTSIVIG QLE+NL+QFDLATSR+GFS +LL R TC FNFTS
Sbjct: 363 DGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFNFTS 413
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 264 bits (675), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 166/408 (40%), Positives = 220/408 (53%), Gaps = 40/408 (9%)
Query: 32 LVLRVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQ 91
+VL V D +T + +++RTPL+ V + V L GN LWV+CE+ Y S T + C S Q
Sbjct: 10 VVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQ 69
Query: 92 CNLANAKXXXXXXXXXXP-----------DNPISNTGTHGDIRIDVLSIQSTDG--RNPG 138
C+ AN P NPI+ G++ DVL+I +T G + G
Sbjct: 70 CSRANTHQCLSCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLG 129
Query: 139 RAVTVPNFIFLCGSEFVLQ-GLASGVVGIAGLGRSKVALPSQLAAAFSLKRKFALCLS-- 195
VTVP F+F C F++Q GL G+AGLG + ++LP+QLA+ F L+R+F CLS
Sbjct: 130 PLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRY 189
Query: 196 PFDDGAIVFGDGP--YYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVH 253
P GAI+FGD P N D+ +L +TPL I T G EY + V S+
Sbjct: 190 PTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTI----TLQG-------EYNVRVNSIR 238
Query: 254 VNGKAV-PLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPV 312
+N +V PLNK +I GGT IST P+ VL+ S+Y+A Q FA +PK A+V V
Sbjct: 239 INQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSV 298
Query: 313 APFGACFRLQDIGFTRIGPVVPQIDLVLQNKN-VVWSIHGQNSMVQIGGDALCLGFVDGG 371
APFG CF I P +DLV+ N VW I G++ MVQ CLG ++GG
Sbjct: 299 APFGLCFNSNKIN------AYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGG 352
Query: 372 VNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLLFERAT-CT--FNF 416
+ PR I +GARQLE NL+ FDLA SR+GFS S L C FNF
Sbjct: 353 MQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCADLFNF 400
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 177/406 (43%), Gaps = 54/406 (13%)
Query: 36 VAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLA 95
V KDTAT Y LV + + G ++W CE G + C S C LA
Sbjct: 9 VTKDTATSLYTIPFHDGASLV-----LDVAGLLVWSTCEGG---QSPAEIACSSPTCLLA 60
Query: 96 NA------------KXXXXXXXXXXPDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTV 143
NA P NP++ G + + +TDG P V V
Sbjct: 61 NAYPAPGCPAPSCGSDRHDKPCTAYPSNPVTGACAAGSLFHTRFAANTTDGNKPVSEVNV 120
Query: 144 PNFIFLCGSEFVLQGLASGVVGIAGLGRSKVALPSQLAAAFSLKRKFALCLSPFDDGAIV 203
+ C +L L G G+AGL S +ALPSQ+A+A + KF LCL G +
Sbjct: 121 -RVLAACAPSKLLASLPRGSTGVAGLAGSGLALPSQVASAQKVPNKFLLCLPTGGPGVAI 179
Query: 204 FGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNK 263
FG GP L ++++ YTPL G P+ ++I S+ V VP+++
Sbjct: 180 FGGGP---LPWPQFTQSMDYTPLVAKG--------GSPA--HYISARSIKVENTRVPISE 226
Query: 264 TLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAM--------PKVARVAPVAPF 315
L+ GG +ST PY +L +Y+ LV AF A+ P V PVAPF
Sbjct: 227 RALA-----TGGVMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKPVAPF 281
Query: 316 GACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQNSMVQIGGDALCLGF-----VDG 370
C+ + +G G VP + L L + W++ G+NSMV + C+ F VD
Sbjct: 282 ELCYDTKTLGNNPGGYWVPNVLLELDGGS-DWAMTGKNSMVDVKPGTACVAFVEMKGVDA 340
Query: 371 GVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLLFERATCTFNF 416
G ++++G Q+E+ +L FD+ RLGF F + +FNF
Sbjct: 341 GDGSAPAVILGGAQMEDFVLDFDMEKKRLGFLRLPHFTGCS-SFNF 385
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 113/392 (28%), Positives = 169/392 (43%), Gaps = 53/392 (13%)
Query: 36 VAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLA 95
V KD AT Y LV + + G ++W C+ G + C S C LA
Sbjct: 7 VTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCDGGQPPAE---IPCSSPTCLLA 58
Query: 96 NA------------KXXXXXXXXXXPDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTV 143
NA P NP+S G + +TDG P V V
Sbjct: 59 NAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNV 118
Query: 144 PNFIFLCGSEFVLQGLASGVVGIAGLGRSKVALPSQLAAAFSLKRKFALCLSPFDDGAIV 203
+ C +L L G G+AGL S +ALP+Q+A+A + +F LCL G +
Sbjct: 119 -GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI 177
Query: 204 FGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNK 263
FG GP + ++++ YTPL G P+ ++I S+ V VP+ +
Sbjct: 178 FGGGP---VPWPQFTQSMPYTPLVTKG--------GSPA--HYISARSIVVGDTRVPVPE 224
Query: 264 TLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAM--------PKVARVAPVAPF 315
L+ GG +ST PY +L +Y+ L+ AF A+ P V VAPF
Sbjct: 225 GALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPF 279
Query: 316 GACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQNSMVQIGGDALCLGFVD-----G 370
G C+ + +G G VP + L L + W++ G+NSMV + C+ FV+
Sbjct: 280 GVCYDTKTLGNNLGGYAVPNVQLGLDGGS-DWTMTGKNSMVDVKQGTACVAFVEMKGVAA 338
Query: 371 GVNPRTSIVIGARQLENNLLQFDLATSRLGFS 402
G ++++G Q+E+ +L FD+ RLGFS
Sbjct: 339 GDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 127 bits (320), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 112/392 (28%), Positives = 168/392 (42%), Gaps = 53/392 (13%)
Query: 36 VAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLA 95
V KD AT Y LV + + G ++W C+ G + C S C LA
Sbjct: 7 VTKDPATSLYTIPFHDGASLV-----LDVAGPLVWSTCKGGQPPAE---IPCSSPTCLLA 58
Query: 96 NA------------KXXXXXXXXXXPDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTV 143
NA P NP+S G + +TDG P V V
Sbjct: 59 NAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNV 118
Query: 144 PNFIFLCGSEFVLQGLASGVVGIAGLGRSKVALPSQLAAAFSLKRKFALCLSPFDDGAIV 203
+ C +L L G G+AGL S +ALP+Q+A+A + +F LCL G +
Sbjct: 119 -GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAI 177
Query: 204 FGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNK 263
FG GP + ++++ YTPL G P+ ++I S+ V VP+ +
Sbjct: 178 FGGGP---VPWPQFTQSMPYTPLVTKG--------GSPA--HYISARSIVVGDTRVPVPE 224
Query: 264 TLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPK--------VARVAPVAPF 315
L+ GG +ST PY +L +Y+ L+ AF A+ V VAPF
Sbjct: 225 GALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVAPF 279
Query: 316 GACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQNSMVQIGGDALCLGFVD-----G 370
G C+ + +G G VP + L L + W++ G+NSMV + C+ FV+
Sbjct: 280 GVCYDTKTLGNNLGGYAVPNVQLGLDGGS-DWTMTGKNSMVDVKQGTACVAFVEMKGVAA 338
Query: 371 GVNPRTSIVIGARQLENNLLQFDLATSRLGFS 402
G ++++G Q+E+ +L FD+ RLGFS
Sbjct: 339 GDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 109 PDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAG 168
P+NPI+ DI + + + DG+N + + N S+ L + ++G AG
Sbjct: 795 PENPINLQTVQEDIELLTRTYEEDDGKNRSGKIFIHN---EKASKVYTTDLIAAIIGEAG 851
Query: 169 LGR--SKVALPSQL 180
GR S+ A+P +
Sbjct: 852 KGRFESRTAVPGHV 865
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 17/128 (13%)
Query: 287 LETSIYKALVQAFASA--MPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKN 344
L ++ A+V+A A A +P+ + AC+ + ++ P+I + L+++N
Sbjct: 234 LPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYF----PKISIYLRDEN 289
Query: 345 VVWSIHGQ-------NSMVQIGGDALCLGFVDGGVNPRT-SIVIGARQLENNLLQFDLAT 396
S M+ G + C F G++P T ++VIGA +E + FD A
Sbjct: 290 SSRSFRITILPQLYIQPMMGAGLNYECYRF---GISPSTNALVIGATVMEGFYVIFDRAQ 346
Query: 397 SRLGFSDS 404
R+GF+ S
Sbjct: 347 KRVGFAAS 354
>pdb|4F5X|W Chain W, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1089
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 240 EPSVEYFIGVTSVHVNGKAVPL-NKTLLSIDNEGVGGTKISTVNPYTVLETSIYKAL 295
+PS+E V S+H N + L + + ID + G+KI + + Y +LE+ +Y L
Sbjct: 941 KPSIEELYKVISLHENEIQLYLISLGIPKIDADTYVGSKIYSRDKYRILESYVYNLL 997
>pdb|2R7Q|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (C-
Terminal Hexahistidine-Tagged)
pdb|2R7R|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)
Complex
pdb|2R7S|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1 RNA (UGUGCC)
Complex
pdb|2R7T|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGAACC)
Complex
pdb|2R7U|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (AAAAGCC)
Complex
pdb|2R7V|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (GGCUUU)
COMPLEX
pdb|2R7W|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)MRNA
5'-Cap (M7gpppg) Complex
pdb|2R7X|A Chain A, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
pdb|2R7X|B Chain B, Crystal Structure Of Rotavirus Sa11 Vp1RNA (UGUGACC)GTP
Complex
Length = 1095
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 240 EPSVEYFIGVTSVHVNGKAVPL-NKTLLSIDNEGVGGTKISTVNPYTVLETSIYKAL 295
+PS+E V S+H N + L + + ID + G+KI + + Y +LE+ +Y L
Sbjct: 941 KPSIEELYKVISLHENEIQLYLISLGIPKIDADTYVGSKIYSRDKYRILESYVYNLL 997
>pdb|2R7O|A Chain A, Crystal Structure Of Vp1 Apoenzyme Of Rotavirus Sa11 (N-
Terminal Hexahistidine-Tagged)
pdb|4AU6|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4AU6|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 1095
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 240 EPSVEYFIGVTSVHVNGKAVPL-NKTLLSIDNEGVGGTKISTVNPYTVLETSIYKAL 295
+PS+E V S+H N + L + + ID + G+KI + + Y +LE+ +Y L
Sbjct: 947 KPSIEELYKVISLHENEIQLYLISLGIPKIDADTYVGSKIYSRDKYRILESYVYNLL 1003
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,269,324
Number of Sequences: 62578
Number of extensions: 448717
Number of successful extensions: 1147
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1110
Number of HSP's gapped (non-prelim): 15
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)