Query 014679
Match_columns 420
No_of_seqs 181 out of 1160
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 9.3E-58 2E-62 459.0 36.6 328 41-413 81-429 (431)
2 cd05489 xylanase_inhibitor_I_l 100.0 3.3E-57 7.2E-62 445.5 35.3 343 51-405 2-362 (362)
3 cd05472 cnd41_like Chloroplast 100.0 9.5E-56 2.1E-60 426.7 33.2 295 44-412 1-299 (299)
4 KOG1339 Aspartyl protease [Pos 100.0 4E-54 8.7E-59 430.2 32.6 333 41-413 43-397 (398)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 3.4E-52 7.4E-57 406.5 29.5 306 40-403 2-325 (325)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.5E-52 9.7E-57 405.5 30.0 299 43-412 2-325 (326)
7 PTZ00165 aspartyl protease; Pr 100.0 5.9E-52 1.3E-56 419.2 31.1 306 32-406 109-448 (482)
8 cd05478 pepsin_A Pepsin A, asp 100.0 6.7E-52 1.4E-56 403.0 29.0 304 35-403 2-317 (317)
9 cd05486 Cathespin_E Cathepsin 100.0 8.8E-52 1.9E-56 402.0 28.0 293 45-403 1-316 (316)
10 cd05475 nucellin_like Nucellin 100.0 5.5E-51 1.2E-55 388.2 30.4 265 43-403 1-270 (273)
11 cd05488 Proteinase_A_fungi Fun 100.0 3.9E-51 8.4E-56 398.0 29.5 300 35-403 2-320 (320)
12 cd05476 pepsin_A_like_plant Ch 100.0 4.1E-51 8.8E-56 387.6 28.7 261 44-412 1-265 (265)
13 cd05477 gastricsin Gastricsins 100.0 5.6E-51 1.2E-55 396.7 30.4 296 42-403 1-317 (318)
14 cd06098 phytepsin Phytepsin, a 100.0 6.1E-51 1.3E-55 396.0 29.8 298 35-403 2-317 (317)
15 cd05485 Cathepsin_D_like Cathe 100.0 2E-50 4.3E-55 394.3 29.3 304 35-403 3-329 (329)
16 cd05487 renin_like Renin stimu 100.0 6.1E-50 1.3E-54 390.6 29.6 301 39-404 3-326 (326)
17 PTZ00147 plasmepsin-1; Provisi 100.0 6.8E-50 1.5E-54 401.3 30.5 306 29-406 125-451 (453)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 1E-49 2.3E-54 399.2 30.5 304 31-406 126-450 (450)
19 cd05473 beta_secretase_like Be 100.0 1E-48 2.2E-53 387.6 30.3 323 43-419 2-358 (364)
20 cd05474 SAP_like SAPs, pepsin- 100.0 3.8E-48 8.2E-53 373.0 25.8 275 44-404 2-295 (295)
21 cd06097 Aspergillopepsin_like 100.0 2.8E-46 6E-51 357.0 25.8 266 45-403 1-278 (278)
22 cd05471 pepsin_like Pepsin-lik 100.0 1E-43 2.2E-48 339.4 28.5 272 45-403 1-283 (283)
23 PF00026 Asp: Eukaryotic aspar 100.0 6.5E-45 1.4E-49 353.6 17.6 300 44-403 1-316 (317)
24 PF14543 TAXi_N: Xylanase inhi 100.0 4.3E-29 9.4E-34 219.0 15.4 153 45-206 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 8.4E-27 1.8E-31 204.2 14.9 158 244-403 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.8 9.6E-19 2.1E-23 142.9 11.0 104 47-169 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.9 4.1E-05 8.9E-10 60.2 7.3 93 44-171 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.1 0.0039 8.4E-08 51.6 9.2 102 34-171 2-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.9 0.051 1.1E-06 41.7 7.8 89 47-170 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.1 0.2 4.3E-06 41.5 9.1 94 41-171 13-107 (124)
31 cd05479 RP_DDI RP_DDI; retrope 94.9 0.18 3.9E-06 41.8 8.6 25 377-401 100-124 (124)
32 cd05484 retropepsin_like_LTR_2 91.8 0.18 4E-06 39.1 3.3 27 45-73 1-27 (91)
33 PF08284 RVP_2: Retroviral asp 90.4 1.4 3E-05 37.1 7.5 26 378-403 106-131 (135)
34 TIGR03698 clan_AA_DTGF clan AA 87.4 4.2 9.1E-05 32.6 8.1 23 377-399 85-107 (107)
35 PF13975 gag-asp_proteas: gag- 87.2 1 2.2E-05 33.3 4.1 31 41-73 5-35 (72)
36 COG3577 Predicted aspartyl pro 83.3 12 0.00026 33.6 9.4 80 32-132 94-173 (215)
37 PF13650 Asp_protease_2: Aspar 82.8 1.9 4.2E-05 32.7 4.0 21 275-295 11-31 (90)
38 PF00077 RVP: Retroviral aspar 82.2 1.9 4.1E-05 33.8 3.8 28 45-74 6-33 (100)
39 TIGR02281 clan_AA_DTGA clan AA 80.1 3.4 7.3E-05 34.0 4.7 36 242-295 9-44 (121)
40 cd05484 retropepsin_like_LTR_2 78.5 3.5 7.6E-05 31.8 4.2 30 251-295 4-33 (91)
41 PF13975 gag-asp_proteas: gag- 76.0 5.4 0.00012 29.4 4.4 20 276-295 22-41 (72)
42 cd05483 retropepsin_like_bacte 73.9 7 0.00015 29.8 4.8 21 275-295 15-35 (96)
43 cd06095 RP_RTVL_H_like Retrope 72.8 5.8 0.00012 30.3 4.0 20 276-295 12-31 (86)
44 cd05482 HIV_retropepsin_like R 70.8 5.2 0.00011 30.9 3.2 24 48-73 2-25 (87)
45 cd06095 RP_RTVL_H_like Retrope 68.6 5.8 0.00013 30.3 3.1 25 48-74 2-26 (86)
46 COG3577 Predicted aspartyl pro 62.8 17 0.00036 32.7 5.1 36 242-295 103-138 (215)
47 PF15284 PAGK: Phage-encoded v 58.7 7.7 0.00017 27.4 1.9 24 1-24 1-24 (61)
48 PF12384 Peptidase_A2B: Ty3 tr 58.6 44 0.00096 29.0 6.8 21 275-295 47-67 (177)
49 PF02160 Peptidase_A3: Caulifl 58.0 26 0.00057 31.5 5.6 26 377-403 92-117 (201)
50 PF00077 RVP: Retroviral aspar 57.0 15 0.00032 28.6 3.6 27 250-291 8-34 (100)
51 PF12384 Peptidase_A2B: Ty3 tr 54.3 16 0.00035 31.6 3.5 41 33-73 19-61 (177)
52 cd05475 nucellin_like Nucellin 49.6 23 0.0005 33.3 4.3 44 31-74 145-194 (273)
53 cd05481 retropepsin_like_LTR_1 49.3 22 0.00048 27.6 3.4 21 275-295 12-32 (93)
54 PF09668 Asp_protease: Asparty 42.2 40 0.00086 27.9 4.0 31 250-295 27-57 (124)
55 COG5550 Predicted aspartyl pro 41.7 20 0.00043 29.4 2.1 20 276-295 29-49 (125)
56 PLN03146 aspartyl protease fam 39.2 47 0.001 33.7 4.9 43 31-73 267-323 (431)
57 PF09668 Asp_protease: Asparty 38.6 48 0.001 27.4 3.9 29 42-72 22-50 (124)
58 cd05471 pepsin_like Pepsin-lik 37.3 57 0.0012 30.3 4.9 45 29-74 167-219 (283)
59 PF11925 DUF3443: Protein of u 37.1 63 0.0014 31.8 5.1 111 43-172 22-149 (370)
60 cd05476 pepsin_A_like_plant Ch 34.4 67 0.0014 30.0 4.8 46 29-74 131-193 (265)
61 KOG0012 DNA damage inducible p 34.3 3E+02 0.0064 27.1 9.0 38 363-403 307-345 (380)
62 cd06098 phytepsin Phytepsin, a 31.5 77 0.0017 30.5 4.8 40 31-73 179-226 (317)
63 cd05472 cnd41_like Chloroplast 31.3 47 0.001 31.6 3.3 45 29-73 131-187 (299)
64 TIGR03698 clan_AA_DTGF clan AA 30.8 62 0.0013 25.8 3.4 65 47-132 2-71 (107)
65 PF08284 RVP_2: Retroviral asp 30.4 66 0.0014 26.9 3.6 28 43-72 20-47 (135)
66 cd06097 Aspergillopepsin_like 29.7 76 0.0016 29.8 4.4 42 30-73 166-214 (278)
67 cd05474 SAP_like SAPs, pepsin- 27.6 85 0.0018 29.6 4.3 44 31-74 139-195 (295)
68 cd06096 Plasmepsin_5 Plasmepsi 24.5 94 0.002 30.0 4.1 39 32-73 200-247 (326)
69 cd05485 Cathepsin_D_like Cathe 23.9 97 0.0021 30.0 4.0 40 31-73 181-226 (329)
70 KOG1339 Aspartyl protease [Pos 21.7 1.4E+02 0.0031 29.8 4.8 43 30-73 230-284 (398)
71 cd05489 xylanase_inhibitor_I_l 20.2 1.2E+02 0.0026 30.0 3.9 44 30-73 185-245 (362)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=9.3e-58 Score=459.01 Aligned_cols=328 Identities=25% Similarity=0.461 Sum_probs=265.8
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCC-------------CCCCCccccCCCCcccCccccC-CCC-CCCC
Q 014679 41 ATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKG-------------YVSSTNKTARCGSAQCNLANAK-ACG-GGIC 105 (420)
Q Consensus 41 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c-------------~~Sst~~~~~c~~~~C~~~~~~-~c~-~~~~ 105 (420)
.+++|+++|.||||||++.|+|||||+++||+|.+| .+|+||+.++|.++.|+..... .|. ++.|
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c 160 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTC 160 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCC
Confidence 467999999999999999999999999999998865 2789999999999999866543 365 3569
Q ss_pred cceeccCCCCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCCCCCccHHHHhhhcC
Q 014679 106 GAGPDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGRSKVALPSQLAAAFS 185 (420)
Q Consensus 106 ~~~~~y~~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~ 185 (420)
.|.+.|+ |++.+.|.+++|+|+|++.. ++.++++++.|||++.+.+. +....+||||||++.+|++.||...
T Consensus 161 ~y~i~Yg-dgs~~~G~l~~Dtltlg~~~----~~~~~v~~~~FGc~~~~~g~-f~~~~~GilGLG~~~~Sl~sql~~~-- 232 (431)
T PLN03146 161 TYSYSYG-DGSFTKGNLAVETLTIGSTS----GRPVSFPGIVFGCGHNNGGT-FDEKGSGIVGLGGGPLSLISQLGSS-- 232 (431)
T ss_pred eeEEEeC-CCCceeeEEEEEEEEeccCC----CCcceeCCEEEeCCCCCCCC-ccCCCceeEecCCCCccHHHHhhHh--
Confidence 9999998 88889999999999998753 12347899999999876322 1225799999999999999999753
Q ss_pred CCCceEEecCCC-----CCceEEEcCCCCCCCCCccCC-CCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEe
Q 014679 186 LKRKFALCLSPF-----DDGAIVFGDGPYYDLNNFDVS-KNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAV 259 (420)
Q Consensus 186 i~~~Fs~~L~~~-----~~G~l~fGg~d~~~~p~~~~~-g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~ 259 (420)
+.++||+||.+. ..|.|+||+.. ++. +.+.|||++.+. .+.+|.|.|++|+||++.+
T Consensus 233 ~~~~FSycL~~~~~~~~~~g~l~fG~~~-------~~~~~~~~~tPl~~~~----------~~~~y~V~L~gIsVgg~~l 295 (431)
T PLN03146 233 IGGKFSYCLVPLSSDSNGTSKINFGTNA-------IVSGSGVVSTPLVSKD----------PDTFYYLTLEAISVGSKKL 295 (431)
T ss_pred hCCcEEEECCCCCCCCCCcceEEeCCcc-------ccCCCCceEcccccCC----------CCCeEEEeEEEEEECCEEC
Confidence 446999999642 47999999853 222 348999998643 2579999999999999998
Q ss_pred ecCccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEE
Q 014679 260 PLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLV 339 (420)
Q Consensus 260 ~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~ 339 (420)
.++...+. ..+.+++||||||++++||+++|++|++++.+++...+.......+..||..... ..+|+|+|+
T Consensus 296 ~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~------~~~P~i~~~ 367 (431)
T PLN03146 296 PYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD------IKLPIITAH 367 (431)
T ss_pred cCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC------CCCCeEEEE
Confidence 87665543 2334689999999999999999999999999888632222223346789975321 369999999
Q ss_pred EeCCceEEEEccCceEEEeCCCeEEEEEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEeecCCccccCcc
Q 014679 340 LQNKNVVWSIHGQNSMVQIGGDALCLGFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLLFERATCT 413 (420)
Q Consensus 340 f~g~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~~~~~~~~~c~ 413 (420)
|+| .+++|++++|++...++..|+++.... +.||||+.|||++|+|||++++||||| +++|.
T Consensus 368 F~G--a~~~l~~~~~~~~~~~~~~Cl~~~~~~----~~~IlG~~~q~~~~vvyDl~~~~igFa------~~~C~ 429 (431)
T PLN03146 368 FTG--ADVKLQPLNTFVKVSEDLVCFAMIPTS----SIAIFGNLAQMNFLVGYDLESKTVSFK------PTDCT 429 (431)
T ss_pred ECC--CeeecCcceeEEEcCCCcEEEEEecCC----CceEECeeeEeeEEEEEECCCCEEeee------cCCcC
Confidence 997 899999999999877777899887642 359999999999999999999999999 56664
No 2
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.3e-57 Score=445.54 Aligned_cols=343 Identities=51% Similarity=0.858 Sum_probs=269.8
Q ss_pred eCCCCce-EEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccC------------CCCCCCCcceec-cCCCCc
Q 014679 51 QRTPLVP-VKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAK------------ACGGGICGAGPD-NPISNT 116 (420)
Q Consensus 51 iGtP~q~-~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~------------~c~~~~~~~~~~-y~~~~~ 116 (420)
+|||-.+ +.|++||||+++||+|.+|. |+||+.++|.+..|+.+..+ .|.++.|.|... |+ +++
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~-sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~-~gs 79 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGH-SSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPV-TGE 79 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCC-cCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccc-cCc
Confidence 6889888 99999999999999999874 66999999999999866433 566677988655 54 777
Q ss_pred eeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCCCCCccHHHHhhhcCCCCceEEecCC
Q 014679 117 GTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGRSKVALPSQLAAAFSLKRKFALCLSP 196 (420)
Q Consensus 117 ~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~L~~ 196 (420)
.+.|.+++|+|+|+..++.... .++++++.|||+......+.....|||||||++++|++.||..++.++++||+||.+
T Consensus 80 ~t~G~l~~Dtl~~~~~~g~~~~-~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~ 158 (362)
T cd05489 80 CATGDLTQDVLSANTTDGSNPL-LVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPS 158 (362)
T ss_pred EeeEEEEEEEEEecccCCCCcc-cceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEeCC
Confidence 9999999999999865432111 136889999999876433444568999999999999999998877667999999987
Q ss_pred C--CCceEEEcCCCCCCCCC-ccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCccccccccCCC
Q 014679 197 F--DDGAIVFGDGPYYDLNN-FDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKTLLSIDNEGV 273 (420)
Q Consensus 197 ~--~~G~l~fGg~d~~~~p~-~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~g~ 273 (420)
. ..|+|+||+.+..+.++ .+..+.+.|+||+.++. ...+|.|++++|+||++.+.+++..++++..+.
T Consensus 159 ~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~---------~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~ 229 (362)
T cd05489 159 SPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPR---------KSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGP 229 (362)
T ss_pred CCCCCeeEEECCCchhcccccccccCCccccccccCCC---------CCCceEEEEEEEEECCEECCCCchhccccccCC
Confidence 4 58999999987533210 12246899999997642 247999999999999999988766665554556
Q ss_pred CcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCC-CCCCcceeecCCCccccCCCcCeEEEEEeCCceEEEEccC
Q 014679 274 GGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPV-APFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQ 352 (420)
Q Consensus 274 ~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~ 352 (420)
+++||||||++++||+++|++|.+++.+++...+..... ...+.||.............+|+|+|+|+|++++|+|+|+
T Consensus 230 ~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ 309 (362)
T cd05489 230 GGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGA 309 (362)
T ss_pred CcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCC
Confidence 789999999999999999999999999887533322221 1136899764321111135799999999863489999999
Q ss_pred ceEEEeCCCeEEEEEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEeecC
Q 014679 353 NSMVQIGGDALCLGFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSL 405 (420)
Q Consensus 353 ~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~~~ 405 (420)
+|+++..++..|+++.+.+....+.||||+.|||++|+|||++++|||||+++
T Consensus 310 ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~~ 362 (362)
T cd05489 310 NSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSSL 362 (362)
T ss_pred ceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccCC
Confidence 99998877788999987653324579999999999999999999999999864
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=9.5e-56 Score=426.66 Aligned_cols=295 Identities=29% Similarity=0.534 Sum_probs=238.7
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCCCCceeeEEEE
Q 014679 44 QYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPISNTGTHGDIR 123 (420)
Q Consensus 44 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~~~~~~~G~~~ 123 (420)
+|+++|.||||||++.|+|||||+++||+|.+| |.|.+.|+ +++.+.|.++
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------~~~~i~Yg-~Gs~~~G~~~ 51 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------CLYQVSYG-DGSYTTGDLA 51 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC----------------------------CeeeeEeC-CCceEEEEEE
Confidence 699999999999999999999999999998633 67999998 8888899999
Q ss_pred EEEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCCCCCccHHHHhhhcCCCCceEEecCCC---CCc
Q 014679 124 IDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGRSKVALPSQLAAAFSLKRKFALCLSPF---DDG 200 (420)
Q Consensus 124 ~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~L~~~---~~G 200 (420)
+|+|+|++.. .++++.|||+.... +.....+||||||++..+++.|+..+ .+++||+||.+. ..|
T Consensus 52 ~D~v~ig~~~--------~~~~~~Fg~~~~~~--~~~~~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L~~~~~~~~G 119 (299)
T cd05472 52 TDTLTLGSSD--------VVPGFAFGCGHDNE--GLFGGAAGLLGLGRGKLSLPSQTASS--YGGVFSYCLPDRSSSSSG 119 (299)
T ss_pred EEEEEeCCCC--------ccCCEEEECCccCC--CccCCCCEEEECCCCcchHHHHhhHh--hcCceEEEccCCCCCCCc
Confidence 9999998742 57889999998763 23346899999999999999998765 348999999863 579
Q ss_pred eEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCccccccccCCCCcEEEec
Q 014679 201 AIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKTLLSIDNEGVGGTKIST 280 (420)
Q Consensus 201 ~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~g~~~~ivDS 280 (420)
+|+|||+|+. .+++.|+|++.++. ...+|.|++++|+|+++.+.++... ....++||||
T Consensus 120 ~l~fGg~d~~-------~g~l~~~pv~~~~~---------~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDS 178 (299)
T cd05472 120 YLSFGAAASV-------PAGASFTPMLSNPR---------VPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDS 178 (299)
T ss_pred eEEeCCcccc-------CCCceECCCccCCC---------CCCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeC
Confidence 9999999852 57899999987642 2469999999999999988654221 1246899999
Q ss_pred CccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCCceEEEEccCceEEEe-C
Q 014679 281 VNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQNSMVQI-G 359 (420)
Q Consensus 281 GTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~-~ 359 (420)
||++++||+++|++|.+++.++....++......+..|+..++.. ...+|+|+|+|++ +++++|++++|++.. .
T Consensus 179 GTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~----~~~~P~i~f~f~~-g~~~~l~~~~y~~~~~~ 253 (299)
T cd05472 179 GTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFR----SVSVPTVSLHFQG-GADVELDASGVLYPVDD 253 (299)
T ss_pred CCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCc----CCccCCEEEEECC-CCEEEeCcccEEEEecC
Confidence 999999999999999999988764322222222344698765422 1479999999985 489999999999843 3
Q ss_pred CCeEEEEEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEeecCCccccCc
Q 014679 360 GDALCLGFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLLFERATC 412 (420)
Q Consensus 360 ~~~~C~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~~~~~~~~~c 412 (420)
.+..|+++...... .+.||||+.|||++|+|||++++||||| +++|
T Consensus 254 ~~~~C~~~~~~~~~-~~~~ilG~~fl~~~~vvfD~~~~~igfa------~~~C 299 (299)
T cd05472 254 SSQVCLAFAGTSDD-GGLSIIGNVQQQTFRVVYDVAGGRIGFA------PGGC 299 (299)
T ss_pred CCCEEEEEeCCCCC-CCCEEEchHHccceEEEEECCCCEEeEe------cCCC
Confidence 46789988765322 3579999999999999999999999999 5666
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-54 Score=430.17 Aligned_cols=333 Identities=29% Similarity=0.498 Sum_probs=273.5
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCC--------------CCCCccccCCCCcccCccccCCCCCCCCc
Q 014679 41 ATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGY--------------VSSTNKTARCGSAQCNLANAKACGGGICG 106 (420)
Q Consensus 41 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~--------------~Sst~~~~~c~~~~C~~~~~~~c~~~~~~ 106 (420)
.+++|+++|.||||||+|.|+|||||+++||+|..|. +|++|+.+.|.+..|.......|.++.|.
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C~ 122 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSCP 122 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcCc
Confidence 5679999999999999999999999999999987662 58899999999999988876666689999
Q ss_pred ceeccCCCCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccccCCC-CCcceEEecCCCCCccHHHHhhhcC
Q 014679 107 AGPDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLA-SGVVGIAGLGRSKVALPSQLAAAFS 185 (420)
Q Consensus 107 ~~~~y~~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~ql~~~~~ 185 (420)
|.+.|+ +++.+.|++++|+|+|++.+ .+.+++++|||+..+.+.... .+.+||||||+..+|++.|+.....
T Consensus 123 y~i~Yg-d~~~~~G~l~~Dtv~~~~~~------~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~ 195 (398)
T KOG1339|consen 123 YSIQYG-DGSSTSGYLATDTVTFGGTT------SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYN 195 (398)
T ss_pred eEEEeC-CCCceeEEEEEEEEEEcccc------ccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccC
Confidence 999998 88999999999999999842 126678999999988533111 4689999999999999999998777
Q ss_pred CCCceEEecCCC-----CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEee
Q 014679 186 LKRKFALCLSPF-----DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVP 260 (420)
Q Consensus 186 i~~~Fs~~L~~~-----~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~ 260 (420)
..++||+||.+. ..|.|+||+.|. .++.+.+.|+||+.+. ..+|.+.+.+|+|+++. .
T Consensus 196 ~~~~FS~cL~~~~~~~~~~G~i~fG~~d~-----~~~~~~l~~tPl~~~~-----------~~~y~v~l~~I~vgg~~-~ 258 (398)
T KOG1339|consen 196 AINVFSYCLSSNGSPSSGGGSIIFGGVDS-----SHYTGSLTYTPLLSNP-----------STYYQVNLDGISVGGKR-P 258 (398)
T ss_pred CceeEEEEeCCCCCCCCCCcEEEECCCcc-----cCcCCceEEEeeccCC-----------CccEEEEEeEEEECCcc-C
Confidence 667899999987 279999999987 4566789999999864 25999999999999977 5
Q ss_pred cCccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEE
Q 014679 261 LNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVL 340 (420)
Q Consensus 261 ~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f 340 (420)
+....+..+ .+++|+||||++++||.++|++|.+++.+.+. . .......+..|+...... ..+|.|+|+|
T Consensus 259 ~~~~~~~~~---~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~-~~~~~~~~~~C~~~~~~~-----~~~P~i~~~f 328 (398)
T KOG1339|consen 259 IGSSLFCTD---GGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-V-VGTDGEYFVPCFSISTSG-----VKLPDITFHF 328 (398)
T ss_pred CCcceEecC---CCCEEEECCcceeeccHHHHHHHHHHHHhhee-c-cccCCceeeecccCCCCc-----ccCCcEEEEE
Confidence 554444321 47899999999999999999999999998640 0 001122356899875321 2499999999
Q ss_pred eCCceEEEEccCceEEEeCCCeE-EEEEEeCCCCCCCceeechhhccccEEEEeCC-CCeEEEeecCCccccCcc
Q 014679 341 QNKNVVWSIHGQNSMVQIGGDAL-CLGFVDGGVNPRTSIVIGARQLENNLLQFDLA-TSRLGFSDSLLFERATCT 413 (420)
Q Consensus 341 ~g~~~~~~i~~~~y~~~~~~~~~-C~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e-~~rIGfa~~~~~~~~~c~ 413 (420)
++ ++.|.+++++|+++..++.. |++++...... +.||||+.|||+++++||.. ++|||||+++ .+|+
T Consensus 329 ~~-g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~-~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~----~~c~ 397 (398)
T KOG1339|consen 329 GG-GAVFSLPPKNYLVEVSDGGGVCLAFFNGMDSG-PLWILGDVFQQNYLVVFDLGENSRVGFAPAL----TNCS 397 (398)
T ss_pred CC-CcEEEeCccceEEEECCCCCceeeEEecCCCC-ceEEEchHHhCCEEEEEeCCCCCEEEecccc----ccCC
Confidence 96 49999999999998876434 99887654321 58999999999999999999 9999999755 5564
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.4e-52 Score=406.48 Aligned_cols=306 Identities=18% Similarity=0.244 Sum_probs=233.3
Q ss_pred CCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCC-cccCccccCCCCCCCCcceeccCCCCcee
Q 014679 40 TATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGS-AQCNLANAKACGGGICGAGPDNPISNTGT 118 (420)
Q Consensus 40 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~-~~C~~~~~~~c~~~~~~~~~~y~~~~~~~ 118 (420)
..+.+|+++|.||||||++.|+|||||+++||+|..|.... ..|.. .......+.++....|.|.+.|+ ++ ++
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~----~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg-~G-~~ 75 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD----IACWLHHKYNSSKSSTYVKNGTEFAIQYG-SG-SL 75 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC----ccccCcCcCCcccCcceeeCCcEEEEEEC-Cc-EE
Confidence 35789999999999999999999999999999998774210 11211 11111112233355689999997 55 58
Q ss_pred eEEEEEEEEEeeecCCCCCCCceecCcEEEeeccccccc-CCCCCcceEEecCCCCCc------cHHHHhhhcCC-CCce
Q 014679 119 HGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQ-GLASGVVGIAGLGRSKVA------LPSQLAAAFSL-KRKF 190 (420)
Q Consensus 119 ~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~~~~~i-~~~F 190 (420)
.|.+++|+|+|++. +++++.|||++..... ......+||||||++..+ ++.+|.+++.| +++|
T Consensus 76 ~G~~~~D~v~~g~~---------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~F 146 (325)
T cd05490 76 SGYLSQDTVSIGGL---------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVF 146 (325)
T ss_pred EEEEeeeEEEECCE---------EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEE
Confidence 99999999999886 7889999999775321 112457999999987654 56789998888 6899
Q ss_pred EEecCCC----CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCcccc
Q 014679 191 ALCLSPF----DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKTLL 266 (420)
Q Consensus 191 s~~L~~~----~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ 266 (420)
|+||.++ ..|+|+|||+|+ .++.|++.|+|+.. ..+|.|++++|+|+++.....
T Consensus 147 S~~L~~~~~~~~~G~l~~Gg~d~-----~~~~g~l~~~~~~~-------------~~~w~v~l~~i~vg~~~~~~~---- 204 (325)
T cd05490 147 SFYLNRDPDAQPGGELMLGGTDP-----KYYTGDLHYVNVTR-------------KAYWQIHMDQVDVGSGLTLCK---- 204 (325)
T ss_pred EEEEeCCCCCCCCCEEEECccCH-----HHcCCceEEEEcCc-------------ceEEEEEeeEEEECCeeeecC----
Confidence 9999864 369999999986 56778999999863 469999999999998743221
Q ss_pred ccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCCceE
Q 014679 267 SIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVV 346 (420)
Q Consensus 267 ~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~ 346 (420)
....+||||||+++++|++++++|.+++.+. +...+ ....+|+.. ..+|+|+|+|++ ..
T Consensus 205 -----~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~-~~~~~C~~~---------~~~P~i~f~fgg--~~ 263 (325)
T cd05490 205 -----GGCEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQG-EYMIDCEKI---------PTLPVISFSLGG--KV 263 (325)
T ss_pred -----CCCEEEECCCCccccCCHHHHHHHHHHhCCc----cccCC-CEEeccccc---------ccCCCEEEEECC--EE
Confidence 1357999999999999999999998887532 11111 223567754 368999999987 89
Q ss_pred EEEccCceEEEeCC--CeEEE-EEEeCCC--CCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 347 WSIHGQNSMVQIGG--DALCL-GFVDGGV--NPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 347 ~~i~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
++|+|++|+++... ...|+ ++..... .....||||++|||++|+|||++++|||||+
T Consensus 264 ~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 264 YPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 99999999997543 35797 5654321 1235799999999999999999999999995
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.5e-52 Score=405.54 Aligned_cols=299 Identities=19% Similarity=0.255 Sum_probs=231.6
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCC-------------CCCCccccCCCCcccCccccCCCCCCCCccee
Q 014679 43 LQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGY-------------VSSTNKTARCGSAQCNLANAKACGGGICGAGP 109 (420)
Q Consensus 43 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~-------------~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 109 (420)
++|+++|.||||+|++.|+|||||+++||+|..|. +|++++.+.|.+..|.. ...|.++.|.|.+
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~~i 79 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEYSI 79 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcEEE
Confidence 58999999999999999999999999999988762 67889999999998853 3467788899999
Q ss_pred ccCCCCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCCCCCc----cHHHHhhhcC
Q 014679 110 DNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGRSKVA----LPSQLAAAFS 185 (420)
Q Consensus 110 ~y~~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s----~~~ql~~~~~ 185 (420)
.|+ +++.+.|.+++|+|+|++..... ...++ .++.|||+............+||||||+++.+ ...+|.++..
T Consensus 80 ~Y~-~gs~~~G~~~~D~v~lg~~~~~~-~~~~~-~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~ 156 (326)
T cd06096 80 SYS-EGSSISGFYFSDFVSFESYLNSN-SEKES-FKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRP 156 (326)
T ss_pred EEC-CCCceeeEEEEEEEEeccCCCCc-ccccc-ccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhcc
Confidence 998 88889999999999998753110 00111 25789999876332223468999999998643 2223444544
Q ss_pred C---CCceEEecCCCCCceEEEcCCCCCCCC-----CccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCE
Q 014679 186 L---KRKFALCLSPFDDGAIVFGDGPYYDLN-----NFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGK 257 (420)
Q Consensus 186 i---~~~Fs~~L~~~~~G~l~fGg~d~~~~p-----~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~ 257 (420)
+ +++||+||.+. .|+|+|||+|+.++. .....+++.|+|+.. ..+|.|.+++|+|+++
T Consensus 157 ~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~-------------~~~y~v~l~~i~vg~~ 222 (326)
T cd06096 157 KLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR-------------KYYYYVKLEGLSVYGT 222 (326)
T ss_pred cccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccC-------------CceEEEEEEEEEEccc
Confidence 4 38999999985 899999999874321 011127899999974 3689999999999988
Q ss_pred EeecCccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEE
Q 014679 258 AVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQID 337 (420)
Q Consensus 258 ~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~ 337 (420)
...... .....+||||||++++||+++|++|.+++ |+|+
T Consensus 223 ~~~~~~-------~~~~~aivDSGTs~~~lp~~~~~~l~~~~----------------------------------P~i~ 261 (326)
T cd06096 223 TSNSGN-------TKGLGMLVDSGSTLSHFPEDLYNKINNFF----------------------------------PTIT 261 (326)
T ss_pred ccceec-------ccCCCEEEeCCCCcccCCHHHHHHHHhhc----------------------------------CcEE
Confidence 611100 12468999999999999999998886544 6899
Q ss_pred EEEeCCceEEEEccCceEEEeCCCeEEEEEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEeecCCccccCc
Q 014679 338 LVLQNKNVVWSIHGQNSMVQIGGDALCLGFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLLFERATC 412 (420)
Q Consensus 338 f~f~g~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~~~~~~~~~c 412 (420)
|+|++ +++++++|++|++......+|+++.... +.+|||++|||++|+|||++++||||| +++|
T Consensus 262 ~~f~~-g~~~~i~p~~y~~~~~~~~c~~~~~~~~----~~~ILG~~flr~~y~vFD~~~~riGfa------~~~C 325 (326)
T cd06096 262 IIFEN-NLKIDWKPSSYLYKKESFWCKGGEKSVS----NKPILGASFFKNKQIIFDLDNNRIGFV------ESNC 325 (326)
T ss_pred EEEcC-CcEEEECHHHhccccCCceEEEEEecCC----CceEEChHHhcCcEEEEECcCCEEeeE------cCCC
Confidence 99985 4999999999999765555566654432 479999999999999999999999999 5666
No 7
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=5.9e-52 Score=419.24 Aligned_cols=306 Identities=16% Similarity=0.204 Sum_probs=235.5
Q ss_pred eEEEEeeCCCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCcccc------CCCCC--C
Q 014679 32 LVLRVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANA------KACGG--G 103 (420)
Q Consensus 32 ~~~p~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~------~~c~~--~ 103 (420)
...||.+ ..+.+|+++|.||||||+|.|+|||||+++||+|..|. +..|..+.. .++.. +
T Consensus 109 ~~~~l~n-~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~-----------~~~C~~~~~yd~s~SSTy~~~~~ 176 (482)
T PTZ00165 109 LQQDLLN-FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECK-----------SGGCAPHRKFDPKKSSTYTKLKL 176 (482)
T ss_pred cceeccc-ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcC-----------cccccccCCCCccccCCcEecCC
Confidence 4566664 57899999999999999999999999999999987662 222322221 11111 1
Q ss_pred C---CcceeccCCCCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeeccccccc-CCCCCcceEEecCCCCC-----
Q 014679 104 I---CGAGPDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQ-GLASGVVGIAGLGRSKV----- 174 (420)
Q Consensus 104 ~---~~~~~~y~~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~----- 174 (420)
. ..+.+.|+ .+++.|.+++|+|+|++. +++++.||+++..... ......|||||||++..
T Consensus 177 ~~~~~~~~i~YG--sGs~~G~l~~DtV~ig~l---------~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~ 245 (482)
T PTZ00165 177 GDESAETYIQYG--TGECVLALGKDTVKIGGL---------KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKES 245 (482)
T ss_pred CCccceEEEEeC--CCcEEEEEEEEEEEECCE---------EEccEEEEEEEeccccccccccccceeecCCCccccccc
Confidence 1 24678887 456789999999999885 7899999999876322 22346899999998754
Q ss_pred ----ccHHHHhhhcCC-CCceEEecCCC--CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEe
Q 014679 175 ----ALPSQLAAAFSL-KRKFALCLSPF--DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFI 247 (420)
Q Consensus 175 ----s~~~ql~~~~~i-~~~Fs~~L~~~--~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v 247 (420)
+++.+|.+++.+ +++||+||.+. .+|+|+|||+|+.+. ...+++.|+|+.. ..+|.|
T Consensus 246 ~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~---~~~g~i~~~Pv~~-------------~~yW~i 309 (482)
T PTZ00165 246 KKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYT---LEGHKIWWFPVIS-------------TDYWEI 309 (482)
T ss_pred CCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHc---CCCCceEEEEccc-------------cceEEE
Confidence 467889999998 69999999764 579999999986321 1146899999974 469999
Q ss_pred EEeEEEECCEEeecCccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCcc
Q 014679 248 GVTSVHVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFT 327 (420)
Q Consensus 248 ~l~~i~vg~~~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 327 (420)
.+++|+|+++.+..... ...+|+||||+++++|++++++|.+++... .+|+..
T Consensus 310 ~l~~i~vgg~~~~~~~~--------~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~------ 362 (482)
T PTZ00165 310 EVVDILIDGKSLGFCDR--------KCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNK------ 362 (482)
T ss_pred EeCeEEECCEEeeecCC--------ceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------cccccc------
Confidence 99999999987764211 367999999999999999999888876421 268765
Q ss_pred ccCCCcCeEEEEEeCC---ceEEEEccCceEEEe----CCCeEEE-EEEeCCC--CCCCceeechhhccccEEEEeCCCC
Q 014679 328 RIGPVVPQIDLVLQNK---NVVWSIHGQNSMVQI----GGDALCL-GFVDGGV--NPRTSIVIGARQLENNLLQFDLATS 397 (420)
Q Consensus 328 ~~~~~~P~i~f~f~g~---~~~~~i~~~~y~~~~----~~~~~C~-~~~~~~~--~~~~~~ILG~~flr~~y~vfD~e~~ 397 (420)
..+|+|+|+|++. .+++.++|++|+++. ..+..|+ ++...+. ..++.||||++|||+||+|||++++
T Consensus 363 ---~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~ 439 (482)
T PTZ00165 363 ---DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHM 439 (482)
T ss_pred ---ccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCC
Confidence 3689999999861 258999999999974 2356896 6765432 1246799999999999999999999
Q ss_pred eEEEeecCC
Q 014679 398 RLGFSDSLL 406 (420)
Q Consensus 398 rIGfa~~~~ 406 (420)
|||||++++
T Consensus 440 rIGfA~a~~ 448 (482)
T PTZ00165 440 MVGLVPAKH 448 (482)
T ss_pred EEEEEeecc
Confidence 999997653
No 8
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=6.7e-52 Score=402.97 Aligned_cols=304 Identities=16% Similarity=0.203 Sum_probs=236.2
Q ss_pred EEeeCCCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCc-ccCccccCCCCCCCCcceeccCC
Q 014679 35 RVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSA-QCNLANAKACGGGICGAGPDNPI 113 (420)
Q Consensus 35 p~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~-~C~~~~~~~c~~~~~~~~~~y~~ 113 (420)
||++ ..+.+|+++|.||||||++.|+|||||+++||+|..|... .|... ......+..+....|.|.+.|+
T Consensus 2 ~l~n-~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~------~c~~~~~f~~~~Sst~~~~~~~~~~~yg- 73 (317)
T cd05478 2 PLTN-YLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQ------ACSNHNRFNPRQSSTYQSTGQPLSIQYG- 73 (317)
T ss_pred cccc-ccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcc------cccccCcCCCCCCcceeeCCcEEEEEEC-
Confidence 5564 3589999999999999999999999999999999876321 12111 1111112233355688999997
Q ss_pred CCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccccCC-CCCcceEEecCCCCC------ccHHHHhhhcCC
Q 014679 114 SNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGL-ASGVVGIAGLGRSKV------ALPSQLAAAFSL 186 (420)
Q Consensus 114 ~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GIlGLg~~~~------s~~~ql~~~~~i 186 (420)
+++ +.|.+++|+|+|++. .++++.|||++....... ....+||||||++.. +++.+|++++.|
T Consensus 74 ~gs-~~G~~~~D~v~ig~~---------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i 143 (317)
T cd05478 74 TGS-MTGILGYDTVQVGGI---------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLV 143 (317)
T ss_pred Cce-EEEEEeeeEEEECCE---------EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCC
Confidence 555 899999999999885 788999999976532211 234799999998754 478899999999
Q ss_pred -CCceEEecCCC--CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCc
Q 014679 187 -KRKFALCLSPF--DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNK 263 (420)
Q Consensus 187 -~~~Fs~~L~~~--~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~ 263 (420)
+++||+||.+. .+|+|+|||+|. .++.|++.|+|+.. +.+|.|.+++++|+++.+....
T Consensus 144 ~~~~FS~~L~~~~~~~g~l~~Gg~d~-----~~~~g~l~~~p~~~-------------~~~w~v~l~~v~v~g~~~~~~~ 205 (317)
T cd05478 144 SQDLFSVYLSSNGQQGSVVTFGGIDP-----SYYTGSLNWVPVTA-------------ETYWQITVDSVTINGQVVACSG 205 (317)
T ss_pred CCCEEEEEeCCCCCCCeEEEEcccCH-----HHccCceEEEECCC-------------CcEEEEEeeEEEECCEEEccCC
Confidence 68999999986 469999999986 46789999999963 4689999999999999875321
Q ss_pred cccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCC
Q 014679 264 TLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNK 343 (420)
Q Consensus 264 ~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~ 343 (420)
+..+||||||++++||++++++|.+++..... . ......+|+.. ..+|.|+|+|+|
T Consensus 206 ---------~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~---~--~~~~~~~C~~~---------~~~P~~~f~f~g- 261 (317)
T cd05478 206 ---------GCQAIVDTGTSLLVGPSSDIANIQSDIGASQN---Q--NGEMVVNCSSI---------SSMPDVVFTING- 261 (317)
T ss_pred ---------CCEEEECCCchhhhCCHHHHHHHHHHhCCccc---c--CCcEEeCCcCc---------ccCCcEEEEECC-
Confidence 35799999999999999999999888754321 0 11112367644 358999999976
Q ss_pred ceEEEEccCceEEEeCCCeEEEE-EEeCCCCCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 344 NVVWSIHGQNSMVQIGGDALCLG-FVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 344 ~~~~~i~~~~y~~~~~~~~~C~~-~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
.+++|||++|+.+. +..|+. +...+. ...||||++|||++|+|||++++|||||+
T Consensus 262 -~~~~i~~~~y~~~~--~~~C~~~~~~~~~--~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 262 -VQYPLPPSAYILQD--QGSCTSGFQSMGL--GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred -EEEEECHHHheecC--CCEEeEEEEeCCC--CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 89999999999865 467984 555432 35799999999999999999999999995
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=8.8e-52 Score=401.96 Aligned_cols=293 Identities=19% Similarity=0.239 Sum_probs=229.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCcc------ccCCCCCCCCcceeccCCCCcee
Q 014679 45 YVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLA------NAKACGGGICGAGPDNPISNTGT 118 (420)
Q Consensus 45 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~------~~~~c~~~~~~~~~~y~~~~~~~ 118 (420)
|+++|.||||||+++|+|||||+++||+|..|. +..|..+ .+.++....|.|.+.|+ ++ .+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-----------~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg-~g-~~ 67 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-----------SQACTKHNRFQPSESSTYVSNGEAFSIQYG-TG-SL 67 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-----------CcccCccceECCCCCcccccCCcEEEEEeC-Cc-EE
Confidence 899999999999999999999999999987663 2223222 22344466799999997 55 68
Q ss_pred eEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccccC-CCCCcceEEecCCCCCc------cHHHHhhhcCC-CCce
Q 014679 119 HGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQG-LASGVVGIAGLGRSKVA------LPSQLAAAFSL-KRKF 190 (420)
Q Consensus 119 ~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~~GIlGLg~~~~s------~~~ql~~~~~i-~~~F 190 (420)
.|.+++|+|+|++. +++++.|||+....... .....+||||||++..+ +..+|.+++.| +++|
T Consensus 68 ~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~F 138 (316)
T cd05486 68 TGIIGIDQVTVEGI---------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMF 138 (316)
T ss_pred EEEeeecEEEECCE---------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEE
Confidence 99999999999875 78899999986652211 12467999999987654 57788999888 6899
Q ss_pred EEecCCC----CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCcccc
Q 014679 191 ALCLSPF----DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKTLL 266 (420)
Q Consensus 191 s~~L~~~----~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ 266 (420)
|+||.++ ..|+|+|||+|+ .++.|++.|+|+.. ..+|.|.+++|+|+++.+....
T Consensus 139 S~~L~~~~~~~~~g~l~fGg~d~-----~~~~g~l~~~pi~~-------------~~~w~v~l~~i~v~g~~~~~~~--- 197 (316)
T cd05486 139 SVYMSRNPNSADGGELVFGGFDT-----SRFSGQLNWVPVTV-------------QGYWQIQLDNIQVGGTVIFCSD--- 197 (316)
T ss_pred EEEEccCCCCCCCcEEEEcccCH-----HHcccceEEEECCC-------------ceEEEEEeeEEEEecceEecCC---
Confidence 9999864 479999999986 56789999999864 4699999999999998764321
Q ss_pred ccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCCceE
Q 014679 267 SIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVV 346 (420)
Q Consensus 267 ~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~ 346 (420)
...+||||||+++++|++++++|.+.+.+.. ..+ ....+|... ..+|+|+|+|+| +.
T Consensus 198 ------~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~-----~~~-~~~~~C~~~---------~~~p~i~f~f~g--~~ 254 (316)
T cd05486 198 ------GCQAIVDTGTSLITGPSGDIKQLQNYIGATA-----TDG-EYGVDCSTL---------SLMPSVTFTING--IP 254 (316)
T ss_pred ------CCEEEECCCcchhhcCHHHHHHHHHHhCCcc-----cCC-cEEEecccc---------ccCCCEEEEECC--EE
Confidence 2579999999999999999999887764321 111 112367643 368999999987 99
Q ss_pred EEEccCceEEEeC--CCeEEE-EEEeCC--CCCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 347 WSIHGQNSMVQIG--GDALCL-GFVDGG--VNPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 347 ~~i~~~~y~~~~~--~~~~C~-~~~~~~--~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
++|+|++|++... .+..|+ ++.... ....+.||||++|||++|+|||.+++|||||+
T Consensus 255 ~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 255 YSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 9999999998752 346797 565432 11235799999999999999999999999995
No 10
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=5.5e-51 Score=388.17 Aligned_cols=265 Identities=24% Similarity=0.418 Sum_probs=216.1
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCCCCceeeEEE
Q 014679 43 LQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPISNTGTHGDI 122 (420)
Q Consensus 43 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~~~~~~~G~~ 122 (420)
++|+++|.||||||++.|+|||||+++||+|.. .|. .| .|.|.+.|+ |++.+.|.+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~----------~c~--~c-----------~c~~~i~Yg-d~~~~~G~~ 56 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDA----------PCT--GC-----------QCDYEIEYA-DGGSSMGVL 56 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCC----------CCC--CC-----------cCccEeEeC-CCCceEEEE
Confidence 479999999999999999999999999999841 221 12 488999997 899999999
Q ss_pred EEEEEEeeecCCCCCCCceecCcEEEeecccccccC--CCCCcceEEecCCCCCccHHHHhhhcCCCCceEEecCCCCCc
Q 014679 123 RIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQG--LASGVVGIAGLGRSKVALPSQLAAAFSLKRKFALCLSPFDDG 200 (420)
Q Consensus 123 ~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~L~~~~~G 200 (420)
++|+|+|+..++. ..++++.|||+....... .....+||||||++..++++||..++.|+++||+||.+...|
T Consensus 57 ~~D~v~~~~~~~~-----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~~~~g 131 (273)
T cd05475 57 VTDIFSLKLTNGS-----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNGGG 131 (273)
T ss_pred EEEEEEEeecCCC-----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEEEccCCCCe
Confidence 9999999764321 256789999997653221 234689999999999999999999888888999999886579
Q ss_pred eEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCccccccccCCCCcEEEec
Q 014679 201 AIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKTLLSIDNEGVGGTKIST 280 (420)
Q Consensus 201 ~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~g~~~~ivDS 280 (420)
.|+||+.. ++.+++.|+|+..++ ...+|.|++.+|+||++.... +..++||||
T Consensus 132 ~l~~G~~~-------~~~g~i~ytpl~~~~----------~~~~y~v~l~~i~vg~~~~~~----------~~~~~ivDT 184 (273)
T cd05475 132 FLFFGDDL-------VPSSGVTWTPMRRES----------QKKHYSPGPASLLFNGQPTGG----------KGLEVVFDS 184 (273)
T ss_pred EEEECCCC-------CCCCCeeecccccCC----------CCCeEEEeEeEEEECCEECcC----------CCceEEEEC
Confidence 99998542 345789999998653 246999999999999985321 136799999
Q ss_pred CccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCC--ceEEEEccCceEEEe
Q 014679 281 VNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNK--NVVWSIHGQNSMVQI 358 (420)
Q Consensus 281 GTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~--~~~~~i~~~~y~~~~ 358 (420)
||++++||+++| +|+|+|+|++. +++++|||++|++..
T Consensus 185 GTt~t~lp~~~y----------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~ 224 (273)
T cd05475 185 GSSYTYFNAQAY----------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIIS 224 (273)
T ss_pred CCceEEcCCccc----------------------------------------cccEEEEECCCCceeEEEeCCCceEEEc
Confidence 999999999765 46899999872 279999999999976
Q ss_pred CCCeEEEEEEeCCC-CCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 359 GGDALCLGFVDGGV-NPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 359 ~~~~~C~~~~~~~~-~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
..+..|++++.... ...+.||||+.|||++|+|||++++|||||+
T Consensus 225 ~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~ 270 (273)
T cd05475 225 EKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVR 270 (273)
T ss_pred CCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCccc
Confidence 66678998876542 1235799999999999999999999999993
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.9e-51 Score=398.04 Aligned_cols=300 Identities=16% Similarity=0.216 Sum_probs=232.8
Q ss_pred EEeeCCCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccc------cCCCCCCCCcce
Q 014679 35 RVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLAN------AKACGGGICGAG 108 (420)
Q Consensus 35 p~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~------~~~c~~~~~~~~ 108 (420)
||.+ ..+.+|+++|.||||+|++.|+|||||+++||+|..|. +..|..+. +.+|....|.|.
T Consensus 2 ~l~n-~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-----------~~~C~~~~~y~~~~Sst~~~~~~~~~ 69 (320)
T cd05488 2 PLTN-YLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-----------SIACFLHSKYDSSASSTYKANGTEFK 69 (320)
T ss_pred cccc-cCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-----------CcccCCcceECCCCCcceeeCCCEEE
Confidence 5554 45789999999999999999999999999999998663 22333222 233445678999
Q ss_pred eccCCCCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccccC-CCCCcceEEecCCCCCcc------HHHHh
Q 014679 109 PDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQG-LASGVVGIAGLGRSKVAL------PSQLA 181 (420)
Q Consensus 109 ~~y~~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~~GIlGLg~~~~s~------~~ql~ 181 (420)
+.|+ ++ ++.|.+++|+++|++. .++++.|||++...+.. .....+||||||++..+. ..+|.
T Consensus 70 ~~y~-~g-~~~G~~~~D~v~ig~~---------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 138 (320)
T cd05488 70 IQYG-SG-SLEGFVSQDTLSIGDL---------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMI 138 (320)
T ss_pred EEEC-Cc-eEEEEEEEeEEEECCE---------EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHH
Confidence 9997 55 5899999999999875 78899999997652211 123579999999987653 34678
Q ss_pred hhcCC-CCceEEecCCC--CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEE
Q 014679 182 AAFSL-KRKFALCLSPF--DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKA 258 (420)
Q Consensus 182 ~~~~i-~~~Fs~~L~~~--~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~ 258 (420)
+++.| +++||+||.+. ..|.|+|||+|+ .++.+++.|+|+.. ..+|.|++++|+||++.
T Consensus 139 ~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~-----~~~~g~l~~~p~~~-------------~~~w~v~l~~i~vg~~~ 200 (320)
T cd05488 139 NQGLLDEPVFSFYLGSSEEDGGEATFGGIDE-----SRFTGKITWLPVRR-------------KAYWEVELEKIGLGDEE 200 (320)
T ss_pred hcCCCCCCEEEEEecCCCCCCcEEEECCcCH-----HHcCCceEEEeCCc-------------CcEEEEEeCeEEECCEE
Confidence 88888 78999999875 589999999986 46778999999974 36899999999999987
Q ss_pred eecCccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEE
Q 014679 259 VPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDL 338 (420)
Q Consensus 259 ~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f 338 (420)
+... ...++|||||++++||+++++++.+++.+... ..+ ....+|... ..+|.|+|
T Consensus 201 ~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~----~~~-~~~~~C~~~---------~~~P~i~f 256 (320)
T cd05488 201 LELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS----WNG-QYTVDCSKV---------DSLPDLTF 256 (320)
T ss_pred eccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc----cCC-cEEeecccc---------ccCCCEEE
Confidence 6543 24699999999999999999998887743221 011 111356543 36899999
Q ss_pred EEeCCceEEEEccCceEEEeCCCeEEEEEE-eCCC--CCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 339 VLQNKNVVWSIHGQNSMVQIGGDALCLGFV-DGGV--NPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 339 ~f~g~~~~~~i~~~~y~~~~~~~~~C~~~~-~~~~--~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
+|++ ++++|||++|++.. +..|+..+ .... ...+.||||+.|||++|+|||++++|||||+
T Consensus 257 ~f~g--~~~~i~~~~y~~~~--~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 257 NFDG--YNFTLGPFDYTLEV--SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EECC--EEEEECHHHheecC--CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 9987 89999999999854 34798544 3221 1134799999999999999999999999995
No 12
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=4.1e-51 Score=387.57 Aligned_cols=261 Identities=30% Similarity=0.594 Sum_probs=220.0
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCCCCceeeEEEE
Q 014679 44 QYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPISNTGTHGDIR 123 (420)
Q Consensus 44 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~~~~~~~G~~~ 123 (420)
+|+++|+||||||++.|+|||||+++||+| |.|.+.|+ |++.+.|.++
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------~~~~~~Y~-dg~~~~G~~~ 48 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------CSYEYSYG-DGSSTSGVLA 48 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-------------------------------CceEeEeC-CCceeeeeEE
Confidence 599999999999999999999999999985 45888997 8999999999
Q ss_pred EEEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCCCCCccHHHHhhhcCCCCceEEecCCC----CC
Q 014679 124 IDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGRSKVALPSQLAAAFSLKRKFALCLSPF----DD 199 (420)
Q Consensus 124 ~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~L~~~----~~ 199 (420)
+|+|+|++.+ ++++++.|||++.... ......+||||||++..|++.||..++ ++||+||.+. ..
T Consensus 49 ~D~v~~g~~~-------~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~~l~~~~~~~~~ 117 (265)
T cd05476 49 TETFTFGDSS-------VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFSYCLVPHDDTGGS 117 (265)
T ss_pred EEEEEecCCC-------CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeEEEccCCCCCCCC
Confidence 9999998752 2578899999998743 334568999999999999999998766 7999999863 58
Q ss_pred ceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCccccccccCCCCcEEEe
Q 014679 200 GAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKTLLSIDNEGVGGTKIS 279 (420)
Q Consensus 200 G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~g~~~~ivD 279 (420)
|+|+||++|.. +.+++.|+|++.++. ...+|.|++++|+|+++.+.++.............+|||
T Consensus 118 G~l~fGg~d~~------~~~~l~~~p~~~~~~---------~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~D 182 (265)
T cd05476 118 SPLILGDAADL------GGSGVVYTPLVKNPA---------NPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIID 182 (265)
T ss_pred CeEEECCcccc------cCCCceEeecccCCC---------CCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEe
Confidence 99999999862 568999999987531 257999999999999998875443332222335789999
Q ss_pred cCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCCceEEEEccCceEEEeC
Q 014679 280 TVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQNSMVQIG 359 (420)
Q Consensus 280 SGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~ 359 (420)
|||++++||+++| |+|+|+|++ ++++.+++++|++...
T Consensus 183 TGTs~~~lp~~~~-----------------------------------------P~i~~~f~~-~~~~~i~~~~y~~~~~ 220 (265)
T cd05476 183 SGTTLTYLPDPAY-----------------------------------------PDLTLHFDG-GADLELPPENYFVDVG 220 (265)
T ss_pred CCCcceEcCcccc-----------------------------------------CCEEEEECC-CCEEEeCcccEEEECC
Confidence 9999999998765 589999995 4999999999999766
Q ss_pred CCeEEEEEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEeecCCccccCc
Q 014679 360 GDALCLGFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLLFERATC 412 (420)
Q Consensus 360 ~~~~C~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~~~~~~~~~c 412 (420)
.+..|+++..... .+.||||++|||++|+|||++++||||| +++|
T Consensus 221 ~~~~C~~~~~~~~--~~~~ilG~~fl~~~~~vFD~~~~~iGfa------~~~C 265 (265)
T cd05476 221 EGVVCLAILSSSS--GGVSILGNIQQQNFLVEYDLENSRLGFA------PADC 265 (265)
T ss_pred CCCEEEEEecCCC--CCcEEEChhhcccEEEEEECCCCEEeee------cCCC
Confidence 6789998887532 3579999999999999999999999999 6666
No 13
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=5.6e-51 Score=396.72 Aligned_cols=296 Identities=17% Similarity=0.224 Sum_probs=234.2
Q ss_pred CceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccc------cCCCCCCCCcceeccCCCC
Q 014679 42 TLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLAN------AKACGGGICGAGPDNPISN 115 (420)
Q Consensus 42 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~------~~~c~~~~~~~~~~y~~~~ 115 (420)
+.+|+++|.||||||++.|+|||||+++||+|..|. ...|...+ +.++....|.|++.|+ ++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-----------~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg-~G 68 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-----------SQACTNHTKFNPSQSSTYSTNGETFSLQYG-SG 68 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-----------CccccccCCCCcccCCCceECCcEEEEEEC-Cc
Confidence 468999999999999999999999999999998663 22333322 2344466799999997 55
Q ss_pred ceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeeccccccc-CCCCCcceEEecCCCC------CccHHHHhhhcCC-C
Q 014679 116 TGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQ-GLASGVVGIAGLGRSK------VALPSQLAAAFSL-K 187 (420)
Q Consensus 116 ~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~------~s~~~ql~~~~~i-~ 187 (420)
++.|.+++|+|+|++. .++++.|||++..... ......+||||||++. .++++||++++.| +
T Consensus 69 -s~~G~~~~D~i~~g~~---------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~ 138 (318)
T cd05477 69 -SLTGIFGYDTVTVQGI---------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQA 138 (318)
T ss_pred -EEEEEEEeeEEEECCE---------EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCC
Confidence 5799999999999875 7889999999875321 1224579999999853 4688999999988 7
Q ss_pred CceEEecCCC---CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCcc
Q 014679 188 RKFALCLSPF---DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKT 264 (420)
Q Consensus 188 ~~Fs~~L~~~---~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~ 264 (420)
++||+||.+. ..|.|+|||+|+ .++.+++.|+|+.. ..+|.|++++|+|+++.+.....
T Consensus 139 ~~FS~~L~~~~~~~~g~l~fGg~d~-----~~~~g~l~~~pv~~-------------~~~w~v~l~~i~v~g~~~~~~~~ 200 (318)
T cd05477 139 PIFSFYLSGQQGQQGGELVFGGVDN-----NLYTGQIYWTPVTS-------------ETYWQIGIQGFQINGQATGWCSQ 200 (318)
T ss_pred CEEEEEEcCCCCCCCCEEEEcccCH-----HHcCCceEEEecCC-------------ceEEEEEeeEEEECCEEecccCC
Confidence 8999999875 469999999986 56788999999863 46999999999999988653211
Q ss_pred ccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCCc
Q 014679 265 LLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKN 344 (420)
Q Consensus 265 ~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~ 344 (420)
...+||||||++++||++++++|++++..... . ......+|+.. ..+|.|+|+|++
T Consensus 201 --------~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~---~--~~~~~~~C~~~---------~~~p~l~~~f~g-- 256 (318)
T cd05477 201 --------GCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD---Q--YGQYVVNCNNI---------QNLPTLTFTING-- 256 (318)
T ss_pred --------CceeeECCCCccEECCHHHHHHHHHHhCCccc---c--CCCEEEeCCcc---------ccCCcEEEEECC--
Confidence 35799999999999999999999988865432 1 11112456643 368999999987
Q ss_pred eEEEEccCceEEEeCCCeEEE-EEEeCC---CCCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 345 VVWSIHGQNSMVQIGGDALCL-GFVDGG---VNPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 345 ~~~~i~~~~y~~~~~~~~~C~-~~~~~~---~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
++++||+++|+... +..|+ ++.+.. ..+.+.||||+.|||++|+|||++++|||||+
T Consensus 257 ~~~~v~~~~y~~~~--~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~ 317 (318)
T cd05477 257 VSFPLPPSAYILQN--NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFAT 317 (318)
T ss_pred EEEEECHHHeEecC--CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeee
Confidence 99999999999865 45786 676432 11234799999999999999999999999996
No 14
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=6.1e-51 Score=396.05 Aligned_cols=298 Identities=18% Similarity=0.254 Sum_probs=229.0
Q ss_pred EEeeCCCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCC-cccCccccCCCCCCCCcceeccCC
Q 014679 35 RVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGS-AQCNLANAKACGGGICGAGPDNPI 113 (420)
Q Consensus 35 p~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~-~~C~~~~~~~c~~~~~~~~~~y~~ 113 (420)
||++ ..+.+|+++|+||||||++.|+|||||+++||+|..|..+ ..|.. .......+.++....+.+.+.|+
T Consensus 2 ~l~n-~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~-----~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg- 74 (317)
T cd06098 2 ALKN-YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFS-----IACYFHSKYKSSKSSTYKKNGTSASIQYG- 74 (317)
T ss_pred cccc-cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCC-----ccccccCcCCcccCCCcccCCCEEEEEcC-
Confidence 4553 5688999999999999999999999999999999877421 11221 01111112333345667889997
Q ss_pred CCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeeccccccc-CCCCCcceEEecCCCCCc------cHHHHhhhcCC
Q 014679 114 SNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQ-GLASGVVGIAGLGRSKVA------LPSQLAAAFSL 186 (420)
Q Consensus 114 ~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~~~~~i 186 (420)
+ +.+.|.+++|+|+|++. +++++.||+++..... ......+||||||++..+ +..+|.+++.|
T Consensus 75 ~-G~~~G~~~~D~v~ig~~---------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i 144 (317)
T cd06098 75 T-GSISGFFSQDSVTVGDL---------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLV 144 (317)
T ss_pred C-ceEEEEEEeeEEEECCE---------EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCC
Confidence 4 45899999999999875 7889999999865221 223468999999997654 45688888888
Q ss_pred -CCceEEecCCC----CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeec
Q 014679 187 -KRKFALCLSPF----DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPL 261 (420)
Q Consensus 187 -~~~Fs~~L~~~----~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~ 261 (420)
+++||+||.+. ..|+|+|||+|+ .++.|++.|+|+.. ..+|.|.+++|+|+++.+..
T Consensus 145 ~~~~FS~~L~~~~~~~~~G~l~fGg~d~-----~~~~g~l~~~pv~~-------------~~~w~v~l~~i~v~g~~~~~ 206 (317)
T cd06098 145 KEPVFSFWLNRNPDEEEGGELVFGGVDP-----KHFKGEHTYVPVTR-------------KGYWQFEMGDVLIGGKSTGF 206 (317)
T ss_pred CCCEEEEEEecCCCCCCCcEEEECccCh-----hhcccceEEEecCc-------------CcEEEEEeCeEEECCEEeee
Confidence 68999999753 479999999986 56789999999963 46899999999999987654
Q ss_pred CccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEe
Q 014679 262 NKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQ 341 (420)
Q Consensus 262 ~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~ 341 (420)
... ...+||||||+++++|+++++++. ...+|+.. ..+|+|+|+|+
T Consensus 207 ~~~--------~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~~---------~~~P~i~f~f~ 252 (317)
T cd06098 207 CAG--------GCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNSL---------SSMPNVSFTIG 252 (317)
T ss_pred cCC--------CcEEEEecCCcceeCCHHHHHhhh-----------------ccCCcccc---------ccCCcEEEEEC
Confidence 321 357999999999999998766542 12468864 35899999997
Q ss_pred CCceEEEEccCceEEEeCC--CeEEE-EEEeCCC--CCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 342 NKNVVWSIHGQNSMVQIGG--DALCL-GFVDGGV--NPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 342 g~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
+ ..++|+|++|+++..+ ...|+ ++..... ..++.||||++|||++|+|||++++|||||+
T Consensus 253 g--~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 253 G--KTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred C--EEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 6 9999999999987643 35797 5554321 1235799999999999999999999999995
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2e-50 Score=394.32 Aligned_cols=304 Identities=19% Similarity=0.256 Sum_probs=235.7
Q ss_pred EEeeCCCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccc------cCCCCCCCCcce
Q 014679 35 RVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLAN------AKACGGGICGAG 108 (420)
Q Consensus 35 p~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~------~~~c~~~~~~~~ 108 (420)
||++ ..+.+|+++|.||||+|++.|++||||+++||+|..|... ...|.... +.+|....|.|.
T Consensus 3 ~~~n-~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~---------~~~c~~~~~y~~~~Sst~~~~~~~~~ 72 (329)
T cd05485 3 PLSN-YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWT---------NIACLLHNKYDSTKSSTYKKNGTEFA 72 (329)
T ss_pred ccee-ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCC---------CccccCCCeECCcCCCCeEECCeEEE
Confidence 4554 4678999999999999999999999999999999877311 11232221 234445678999
Q ss_pred eccCCCCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeeccccccc-CCCCCcceEEecCCCCCc------cHHHHh
Q 014679 109 PDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQ-GLASGVVGIAGLGRSKVA------LPSQLA 181 (420)
Q Consensus 109 ~~y~~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~ 181 (420)
+.|+ +++ +.|.+++|+++|++. +++++.|||+...... ......+||||||++..+ ++.+|.
T Consensus 73 i~Y~-~g~-~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~ 141 (329)
T cd05485 73 IQYG-SGS-LSGFLSTDTVSVGGV---------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMV 141 (329)
T ss_pred EEEC-Cce-EEEEEecCcEEECCE---------EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHH
Confidence 9997 554 899999999999875 7889999999765221 122457999999998655 457899
Q ss_pred hhcCC-CCceEEecCCC----CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECC
Q 014679 182 AAFSL-KRKFALCLSPF----DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNG 256 (420)
Q Consensus 182 ~~~~i-~~~Fs~~L~~~----~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~ 256 (420)
+++.| +++||+||.+. ..|+|+|||+|+ .++.|++.|+|+.. ..+|.|.++++.+++
T Consensus 142 ~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~-----~~~~g~l~~~p~~~-------------~~~~~v~~~~i~v~~ 203 (329)
T cd05485 142 NQKLVDAPVFSFYLNRDPSAKEGGELILGGSDP-----KHYTGNFTYLPVTR-------------KGYWQFKMDSVSVGE 203 (329)
T ss_pred hCCCCCCCEEEEEecCCCCCCCCcEEEEcccCH-----HHcccceEEEEcCC-------------ceEEEEEeeEEEECC
Confidence 99988 68999999864 469999999986 46778999999963 469999999999999
Q ss_pred EEeecCccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeE
Q 014679 257 KAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQI 336 (420)
Q Consensus 257 ~~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i 336 (420)
+.+... ...+||||||++++||++++++|.+++.... ........+|+.. ..+|+|
T Consensus 204 ~~~~~~----------~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~-----~~~~~~~~~C~~~---------~~~p~i 259 (329)
T cd05485 204 GEFCSG----------GCQAIADTGTSLIAGPVDEIEKLNNAIGAKP-----IIGGEYMVNCSAI---------PSLPDI 259 (329)
T ss_pred eeecCC----------CcEEEEccCCcceeCCHHHHHHHHHHhCCcc-----ccCCcEEEecccc---------ccCCcE
Confidence 875321 3579999999999999999999988875421 1111123466643 358999
Q ss_pred EEEEeCCceEEEEccCceEEEeCC--CeEEE-EEEeCC--CCCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 337 DLVLQNKNVVWSIHGQNSMVQIGG--DALCL-GFVDGG--VNPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 337 ~f~f~g~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~--~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
+|+|++ ++++|+|++|+++... ...|+ ++.... ....+.||||+.|||++|+|||++++|||||+
T Consensus 260 ~f~fgg--~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 260 TFVLGG--KSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEEECC--EEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 999987 8999999999998653 45797 566432 11235799999999999999999999999983
No 16
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=6.1e-50 Score=390.61 Aligned_cols=301 Identities=19% Similarity=0.227 Sum_probs=232.5
Q ss_pred CCCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccc------cCCCCCCCCcceeccC
Q 014679 39 DTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLAN------AKACGGGICGAGPDNP 112 (420)
Q Consensus 39 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~------~~~c~~~~~~~~~~y~ 112 (420)
+..+.+|+++|+||||+|+++|+|||||+++||+|..|... ...|..++ +.+|....|.|++.|+
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~---------~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg 73 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPL---------YTACVTHNLYDASDSSTYKENGTEFTIHYA 73 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCc---------chhhcccCcCCCCCCeeeeECCEEEEEEeC
Confidence 34678999999999999999999999999999998766320 01232222 2233356789999997
Q ss_pred CCCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccc-cCCCCCcceEEecCCCCC------ccHHHHhhhcC
Q 014679 113 ISNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVL-QGLASGVVGIAGLGRSKV------ALPSQLAAAFS 185 (420)
Q Consensus 113 ~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GIlGLg~~~~------s~~~ql~~~~~ 185 (420)
++ .+.|.+++|+|+|++. .+ ++.||++..... .......+||||||++.. +++.+|.+++.
T Consensus 74 -~g-~~~G~~~~D~v~~g~~---------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~ 141 (326)
T cd05487 74 -SG-TVKGFLSQDIVTVGGI---------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGV 141 (326)
T ss_pred -Cc-eEEEEEeeeEEEECCE---------Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCC
Confidence 55 5899999999999875 45 368999876421 112245799999998754 35678889988
Q ss_pred C-CCceEEecCCC----CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEee
Q 014679 186 L-KRKFALCLSPF----DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVP 260 (420)
Q Consensus 186 i-~~~Fs~~L~~~----~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~ 260 (420)
| +++||+||.+. ..|+|+|||+|+ .++.|++.|+|+.. ..+|.|++++++|+++.+.
T Consensus 142 i~~~~FS~~L~~~~~~~~~G~l~fGg~d~-----~~y~g~l~~~~~~~-------------~~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 142 LKEDVFSVYYSRDSSHSLGGEIVLGGSDP-----QHYQGDFHYINTSK-------------TGFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred CCCCEEEEEEeCCCCCCCCcEEEECCcCh-----hhccCceEEEECCc-------------CceEEEEecEEEECCEEEe
Confidence 8 68999999864 479999999986 56788999999863 4689999999999998765
Q ss_pred cCccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEE
Q 014679 261 LNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVL 340 (420)
Q Consensus 261 ~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f 340 (420)
... ...+||||||++++||+++++++.+++.+... ......+|+.. ..+|.|+|+|
T Consensus 204 ~~~---------~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~------~~~y~~~C~~~---------~~~P~i~f~f 259 (326)
T cd05487 204 CED---------GCTAVVDTGASFISGPTSSISKLMEALGAKER------LGDYVVKCNEV---------PTLPDISFHL 259 (326)
T ss_pred cCC---------CCEEEECCCccchhCcHHHHHHHHHHhCCccc------CCCEEEecccc---------CCCCCEEEEE
Confidence 321 25799999999999999999999888854321 11123467654 3689999999
Q ss_pred eCCceEEEEccCceEEEeCC--CeEEE-EEEeCCC--CCCCceeechhhccccEEEEeCCCCeEEEeec
Q 014679 341 QNKNVVWSIHGQNSMVQIGG--DALCL-GFVDGGV--NPRTSIVIGARQLENNLLQFDLATSRLGFSDS 404 (420)
Q Consensus 341 ~g~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~--~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~~ 404 (420)
++ .+++|++++|+++..+ +..|+ ++..... ..++.||||++|||++|+|||++++|||||++
T Consensus 260 gg--~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 260 GG--KEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CC--EEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 76 8999999999997643 56797 5654321 12357999999999999999999999999963
No 17
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=6.8e-50 Score=401.29 Aligned_cols=306 Identities=17% Similarity=0.243 Sum_probs=233.6
Q ss_pred CceeEEEEeeCCCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccc------cCCCCC
Q 014679 29 PKALVLRVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLAN------AKACGG 102 (420)
Q Consensus 29 ~~~~~~p~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~------~~~c~~ 102 (420)
...-.+||.+ ..+.+|+++|+||||||++.|+|||||+++||+|..|. +..|.... +.+|..
T Consensus 125 ~~~~~v~L~n-~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-----------~~~C~~~~~yd~s~SsT~~~ 192 (453)
T PTZ00147 125 SEFDNVELKD-LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-----------TEGCETKNLYDSSKSKTYEK 192 (453)
T ss_pred CCCCeeeccc-cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-----------cccccCCCccCCccCcceEE
Confidence 3456677764 46789999999999999999999999999999998763 22333322 233445
Q ss_pred CCCcceeccCCCCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccc-c--CCCCCcceEEecCCCCCc----
Q 014679 103 GICGAGPDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVL-Q--GLASGVVGIAGLGRSKVA---- 175 (420)
Q Consensus 103 ~~~~~~~~y~~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~-~--~~~~~~~GIlGLg~~~~s---- 175 (420)
..|.|.+.|+ +| .+.|.+++|+|+|++. +++ ..|+|+..... . ......|||||||++..+
T Consensus 193 ~~~~f~i~Yg-~G-svsG~~~~DtVtiG~~---------~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~ 260 (453)
T PTZ00147 193 DGTKVEMNYV-SG-TVSGFFSKDLVTIGNL---------SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSV 260 (453)
T ss_pred CCCEEEEEeC-CC-CEEEEEEEEEEEECCE---------EEE-EEEEEEEeccCcccccccccccceecccCCccccccC
Confidence 6789999997 55 6899999999999885 566 47888765421 0 112358999999998654
Q ss_pred --cHHHHhhhcCC-CCceEEecCCC--CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEe
Q 014679 176 --LPSQLAAAFSL-KRKFALCLSPF--DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVT 250 (420)
Q Consensus 176 --~~~ql~~~~~i-~~~Fs~~L~~~--~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~ 250 (420)
++.+|..++.| +++||+||.+. ..|.|+|||+|+ .++.|++.|+|+.. ..+|.|.++
T Consensus 261 ~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~-----~ky~G~l~y~pl~~-------------~~~W~V~l~ 322 (453)
T PTZ00147 261 DPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEE-----RFYEGPLTYEKLNH-------------DLYWQVDLD 322 (453)
T ss_pred CCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcCh-----hhcCCceEEEEcCC-------------CceEEEEEE
Confidence 56789999999 67999999864 579999999986 56789999999953 468999998
Q ss_pred EEEECCEEeecCccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccC
Q 014679 251 SVHVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIG 330 (420)
Q Consensus 251 ~i~vg~~~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 330 (420)
+.+++... ....+||||||+++++|+++++++.+++.... .+.. + ....+|+.
T Consensus 323 -~~vg~~~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~-~-~y~~~C~~---------- 375 (453)
T PTZ00147 323 -VHFGNVSS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL-P-LYVTTCNN---------- 375 (453)
T ss_pred -EEECCEec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC-C-eEEEeCCC----------
Confidence 47776421 13579999999999999999999988875321 1111 1 11346774
Q ss_pred CCcCeEEEEEeCCceEEEEccCceEEEeCC--CeEEE-EEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEeecCC
Q 014679 331 PVVPQIDLVLQNKNVVWSIHGQNSMVQIGG--DALCL-GFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLL 406 (420)
Q Consensus 331 ~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~--~~~C~-~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~~~~ 406 (420)
..+|+|+|.|++ ..++|+|++|+.+..+ ...|+ ++.+.... .+.||||++|||++|+|||++++|||||+++.
T Consensus 376 ~~lP~~~f~f~g--~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~-~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~~ 451 (453)
T PTZ00147 376 TKLPTLEFRSPN--KVYTLEPEYYLQPIEDIGSALCMLNIIPIDLE-KNTFILGDPFMRKYFTVFDYDNHTVGFALAKK 451 (453)
T ss_pred CCCCeEEEEECC--EEEEECHHHheeccccCCCcEEEEEEEECCCC-CCCEEECHHHhccEEEEEECCCCEEEEEEecc
Confidence 258999999987 8999999999976432 35797 56654322 34799999999999999999999999998764
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1e-49 Score=399.19 Aligned_cols=304 Identities=16% Similarity=0.240 Sum_probs=230.1
Q ss_pred eeEEEEeeCCCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccc------cCCCCCCC
Q 014679 31 ALVLRVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLAN------AKACGGGI 104 (420)
Q Consensus 31 ~~~~p~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~------~~~c~~~~ 104 (420)
.-.+|+.. ..+.+|+++|.||||||++.|+|||||+++||+|..|. +..|.... +.++....
T Consensus 126 ~~~~~l~d-~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-----------~~~C~~~~~yd~s~SsT~~~~~ 193 (450)
T PTZ00013 126 NDVIELDD-VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-----------SIGCSIKNLYDSSKSKSYEKDG 193 (450)
T ss_pred CCceeeec-cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-----------ccccccCCCccCccCcccccCC
Confidence 44566664 45789999999999999999999999999999998663 22333322 23333567
Q ss_pred CcceeccCCCCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccc-c--CCCCCcceEEecCCCCCc------
Q 014679 105 CGAGPDNPISNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVL-Q--GLASGVVGIAGLGRSKVA------ 175 (420)
Q Consensus 105 ~~~~~~y~~~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~-~--~~~~~~~GIlGLg~~~~s------ 175 (420)
|.+.+.|+ +| .+.|.+++|+|+|++. +++ ..|+++..... . ......|||||||++..+
T Consensus 194 ~~~~i~YG-~G-sv~G~~~~Dtv~iG~~---------~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p 261 (450)
T PTZ00013 194 TKVDITYG-SG-TVKGFFSKDLVTLGHL---------SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDP 261 (450)
T ss_pred cEEEEEEC-Cc-eEEEEEEEEEEEECCE---------EEc-cEEEEEEeccccccceecccccceecccCCccccccCCC
Confidence 89999997 55 5999999999999885 565 57888765411 1 112357999999997653
Q ss_pred cHHHHhhhcCC-CCceEEecCCC--CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEE
Q 014679 176 LPSQLAAAFSL-KRKFALCLSPF--DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSV 252 (420)
Q Consensus 176 ~~~ql~~~~~i-~~~Fs~~L~~~--~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i 252 (420)
++.+|++++.| +++||+||.+. ..|.|+|||+|+ .+|.|++.|+|+.. ..+|.|+++ +
T Consensus 262 ~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~-----~~y~G~L~y~pv~~-------------~~yW~I~l~-v 322 (450)
T PTZ00013 262 IVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEE-----KFYEGNITYEKLNH-------------DLYWQIDLD-V 322 (450)
T ss_pred HHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCc-----cccccceEEEEcCc-------------CceEEEEEE-E
Confidence 67889999988 67899999864 589999999996 56789999999963 468999998 6
Q ss_pred EECCEEeecCccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCC
Q 014679 253 HVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPV 332 (420)
Q Consensus 253 ~vg~~~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 332 (420)
.+|..... ...+|+||||+++++|+++++++.+.+.... .+. .+ ....+|+. ..
T Consensus 323 ~~G~~~~~------------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~~-~~-~y~~~C~~----------~~ 376 (450)
T PTZ00013 323 HFGKQTMQ------------KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VPF-LP-FYVTTCDN----------KE 376 (450)
T ss_pred EECceecc------------ccceEECCCCccccCCHHHHHHHHHHhCCee--cCC-CC-eEEeecCC----------CC
Confidence 66643321 2579999999999999999988887774321 111 01 12346753 25
Q ss_pred cCeEEEEEeCCceEEEEccCceEEEeC--CCeEEE-EEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEeecCC
Q 014679 333 VPQIDLVLQNKNVVWSIHGQNSMVQIG--GDALCL-GFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLL 406 (420)
Q Consensus 333 ~P~i~f~f~g~~~~~~i~~~~y~~~~~--~~~~C~-~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~~~~ 406 (420)
+|+|+|+|++ .+++|+|++|+.+.. .+..|+ ++.+.... .+.||||++|||++|+|||++++|||||+++|
T Consensus 377 lP~i~F~~~g--~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~-~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~n 450 (450)
T PTZ00013 377 MPTLEFKSAN--NTYTLEPEYYMNPLLDVDDTLCMITMLPVDID-DNTFILGDPFMRKYFTVFDYDKESVGFAIAKN 450 (450)
T ss_pred CCeEEEEECC--EEEEECHHHheehhccCCCCeeEEEEEECCCC-CCCEEECHHHhccEEEEEECCCCEEEEEEeCC
Confidence 8999999987 899999999997532 346797 66554322 35799999999999999999999999998654
No 19
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1e-48 Score=387.61 Aligned_cols=323 Identities=19% Similarity=0.204 Sum_probs=231.6
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCCCCceeeEEE
Q 014679 43 LQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPISNTGTHGDI 122 (420)
Q Consensus 43 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~~~~~~~G~~ 122 (420)
..|+++|.||||+|++.|+|||||+++||+|..|... ...+....+.++....|.|.+.|+ +| ++.|.+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~---------~~~f~~~~SsT~~~~~~~~~i~Yg-~G-s~~G~~ 70 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI---------HTYFHRELSSTYRDLGKGVTVPYT-QG-SWEGEL 70 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc---------cccCCchhCcCcccCCceEEEEEC-cc-eEEEEE
Confidence 4799999999999999999999999999999865210 111111122344456789999997 55 679999
Q ss_pred EEEEEEeeecCCCCCCCceecCcEEEeecccccccCC-CCCcceEEecCCCCC--------ccHHHHhhhcCCCCceEEe
Q 014679 123 RIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGL-ASGVVGIAGLGRSKV--------ALPSQLAAAFSLKRKFALC 193 (420)
Q Consensus 123 ~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GIlGLg~~~~--------s~~~ql~~~~~i~~~Fs~~ 193 (420)
++|+|+|++.. .+.+. +.|+++........ ....|||||||++.+ ++..+|.+++.++++||++
T Consensus 71 ~~D~v~ig~~~------~~~~~-~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~FS~~ 143 (364)
T cd05473 71 GTDLVSIPKGP------NVTFR-ANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVFSLQ 143 (364)
T ss_pred EEEEEEECCCC------ccceE-EeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCccceEEE
Confidence 99999998531 01221 33555544311111 125799999998765 3566888888787799998
Q ss_pred cCC---------C--CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecC
Q 014679 194 LSP---------F--DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLN 262 (420)
Q Consensus 194 L~~---------~--~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~ 262 (420)
|.. . ..|+|+|||+|+ .++.|++.|+|+.. ..+|.|.+++|+|+++.+..+
T Consensus 144 l~~~~~~~~~~~~~~~~g~l~fGg~D~-----~~~~g~l~~~p~~~-------------~~~~~v~l~~i~vg~~~~~~~ 205 (364)
T cd05473 144 MCGAGLPVNGSASGTVGGSMVIGGIDP-----SLYKGDIWYTPIRE-------------EWYYEVIILKLEVGGQSLNLD 205 (364)
T ss_pred ecccccccccccccCCCcEEEeCCcCH-----hhcCCCceEEecCc-------------ceeEEEEEEEEEECCEecccc
Confidence 742 1 379999999986 46788999999974 468999999999999988754
Q ss_pred ccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCC---CCCCcceeecCCCccccCCCcCeEEEE
Q 014679 263 KTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPV---APFGACFRLQDIGFTRIGPVVPQIDLV 339 (420)
Q Consensus 263 ~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~C~~~~~~~~~~~~~~~P~i~f~ 339 (420)
...+. ...+||||||++++||+++|++|.+++.++... +..+.. .....|+...... ...+|+|+|+
T Consensus 206 ~~~~~-----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~C~~~~~~~----~~~~P~i~~~ 275 (364)
T cd05473 206 CKEYN-----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLGSQLACWQKGTTP----WEIFPKISIY 275 (364)
T ss_pred ccccc-----CccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCcceeecccccCch----HhhCCcEEEE
Confidence 33221 246999999999999999999999999887531 111111 1124788653211 1369999999
Q ss_pred EeCC----ceEEEEccCceEEEeC---CCeEEEEEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEeecCCccccCc
Q 014679 340 LQNK----NVVWSIHGQNSMVQIG---GDALCLGFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDSLLFERATC 412 (420)
Q Consensus 340 f~g~----~~~~~i~~~~y~~~~~---~~~~C~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~~~~~~~~~c 412 (420)
|++. +++++|+|++|+.... .+..|+.+..... .+.||||++|||++|+|||++++||||| +++|
T Consensus 276 f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~--~~~~ILG~~flr~~yvvfD~~~~rIGfa------~~~C 347 (364)
T cd05473 276 LRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQS--TNGTVIGAVIMEGFYVVFDRANKRVGFA------VSTC 347 (364)
T ss_pred EccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecC--CCceEEeeeeEcceEEEEECCCCEEeeE------eccc
Confidence 9762 3578999999998643 2467975432221 2469999999999999999999999999 5566
Q ss_pred c----cccccC
Q 014679 413 T----FNFTSI 419 (420)
Q Consensus 413 ~----~~~~~~ 419 (420)
. |+.+-|
T Consensus 348 ~~~~~~~~~~~ 358 (364)
T cd05473 348 AEHDGFRTSEI 358 (364)
T ss_pred ccccCcceeee
Confidence 6 554433
No 20
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.8e-48 Score=372.97 Aligned_cols=275 Identities=19% Similarity=0.280 Sum_probs=226.1
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCCCCceeeEEEE
Q 014679 44 QYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPISNTGTHGDIR 123 (420)
Q Consensus 44 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~~~~~~~G~~~ 123 (420)
.|+++|.||||+|++.|+|||||+++||+ .|.+.|+ +++.+.|.++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~---------------------------------~~~~~Y~-~g~~~~G~~~ 47 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP---------------------------------DFSISYG-DGTSASGTWG 47 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------eeEEEec-cCCcEEEEEE
Confidence 69999999999999999999999999996 3678897 8899999999
Q ss_pred EEEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCCCCC-----------ccHHHHhhhcCC-CCceE
Q 014679 124 IDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGRSKV-----------ALPSQLAAAFSL-KRKFA 191 (420)
Q Consensus 124 ~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~~~~~i-~~~Fs 191 (420)
+|+|+|++. +++++.|||++.. ...+||||||++.. +++.||.+++.| +++||
T Consensus 48 ~D~v~~g~~---------~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fs 112 (295)
T cd05474 48 TDTVSIGGA---------TVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYS 112 (295)
T ss_pred EEEEEECCe---------EecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEE
Confidence 999999875 6789999999874 24799999999875 689999999988 68999
Q ss_pred EecCCC--CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCccccccc
Q 014679 192 LCLSPF--DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKTLLSID 269 (420)
Q Consensus 192 ~~L~~~--~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~ 269 (420)
+||.+. ..|.|+|||+|+ .++.+++.|+|+..+... ....+|.|.+++|.++++.+..+..
T Consensus 113 l~l~~~~~~~g~l~~Gg~d~-----~~~~g~~~~~p~~~~~~~-------~~~~~~~v~l~~i~v~~~~~~~~~~----- 175 (295)
T cd05474 113 LYLNDLDASTGSILFGGVDT-----AKYSGDLVTLPIVNDNGG-------SEPSELSVTLSSISVNGSSGNTTLL----- 175 (295)
T ss_pred EEeCCCCCCceeEEEeeecc-----ceeeceeEEEeCcCcCCC-------CCceEEEEEEEEEEEEcCCCccccc-----
Confidence 999984 589999999986 467789999999875310 1237999999999999987653211
Q ss_pred cCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCCceEEEE
Q 014679 270 NEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSI 349 (420)
Q Consensus 270 ~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~i 349 (420)
.....+||||||++++||++++++|.+++.+.... . ......+|+... . |+|+|+|+| ++++|
T Consensus 176 -~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~--~--~~~~~~~C~~~~---------~-p~i~f~f~g--~~~~i 238 (295)
T cd05474 176 -SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS--D--EGLYVVDCDAKD---------D-GSLTFNFGG--ATISV 238 (295)
T ss_pred -CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC--C--CcEEEEeCCCCC---------C-CEEEEEECC--eEEEE
Confidence 22468999999999999999999999998765421 1 112235677542 3 999999987 99999
Q ss_pred ccCceEEEeC----CCeEEE-EEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEeec
Q 014679 350 HGQNSMVQIG----GDALCL-GFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSDS 404 (420)
Q Consensus 350 ~~~~y~~~~~----~~~~C~-~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~~ 404 (420)
|+++|+++.. .+..|. ++.+... +.||||++|||++|++||.+++|||||++
T Consensus 239 ~~~~~~~~~~~~~~~~~~C~~~i~~~~~---~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 239 PLSDLVLPASTDDGGDGACYLGIQPSTS---DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EHHHhEeccccCCCCCCCeEEEEEeCCC---CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9999999764 256785 7766542 47999999999999999999999999963
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.8e-46 Score=356.95 Aligned_cols=266 Identities=18% Similarity=0.184 Sum_probs=202.1
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcc-cCccccCCCC-CCCCcceeccCCCCceeeEEE
Q 014679 45 YVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQ-CNLANAKACG-GGICGAGPDNPISNTGTHGDI 122 (420)
Q Consensus 45 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~-C~~~~~~~c~-~~~~~~~~~y~~~~~~~~G~~ 122 (420)
|+++|+||||||++.|+|||||+++||+|..|.... |.... .....+..|. ...|.|.+.|+ +++.+.|.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~------~~~~~~y~~~~Sst~~~~~~~~~~i~Y~-~G~~~~G~~ 73 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQ------QGGHKLYDPSKSSTAKLLPGATWSISYG-DGSSASGIV 73 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchh------hccCCcCCCccCccceecCCcEEEEEeC-CCCeEEEEE
Confidence 799999999999999999999999999998773211 10000 0001122232 24689999998 888899999
Q ss_pred EEEEEEeeecCCCCCCCceecCcEEEeeccccccc-CCCCCcceEEecCCCCCc---------cHHHHhhhcCCCCceEE
Q 014679 123 RIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQ-GLASGVVGIAGLGRSKVA---------LPSQLAAAFSLKRKFAL 192 (420)
Q Consensus 123 ~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~~s---------~~~ql~~~~~i~~~Fs~ 192 (420)
++|+|+|++. +++++.|||++..... ......+||||||++..+ +..+|.+++. +++||+
T Consensus 74 ~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~-~~~Fs~ 143 (278)
T cd06097 74 YTDTVSIGGV---------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD-APLFTA 143 (278)
T ss_pred EEEEEEECCE---------EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc-CceEEE
Confidence 9999999876 7889999999876321 123468999999987543 4556666644 689999
Q ss_pred ecCCCCCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCccccccccCC
Q 014679 193 CLSPFDDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKTLLSIDNEG 272 (420)
Q Consensus 193 ~L~~~~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~g 272 (420)
||.+...|+|+|||+|+ .++.|++.|+|+..+ ..+|.|++++|+|+++..... .
T Consensus 144 ~l~~~~~G~l~fGg~D~-----~~~~g~l~~~pi~~~------------~~~w~v~l~~i~v~~~~~~~~---------~ 197 (278)
T cd06097 144 DLRKAAPGFYTFGYIDE-----SKYKGEISWTPVDNS------------SGFWQFTSTSYTVGGDAPWSR---------S 197 (278)
T ss_pred EecCCCCcEEEEeccCh-----HHcCCceEEEEccCC------------CcEEEEEEeeEEECCcceeec---------C
Confidence 99875689999999986 567899999999753 368999999999998743211 1
Q ss_pred CCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCCceEEEEccC
Q 014679 273 VGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQ 352 (420)
Q Consensus 273 ~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~ 352 (420)
+..+||||||+++++|+++++++.+++.... +.. ...+|..+|.. .+|+|+|+|
T Consensus 198 ~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~--~~~------~~~~~~~~C~~------~~P~i~f~~------------ 251 (278)
T cd06097 198 GFSAIADTGTTLILLPDAIVEAYYSQVPGAY--YDS------EYGGWVFPCDT------TLPDLSFAV------------ 251 (278)
T ss_pred CceEEeecCCchhcCCHHHHHHHHHhCcCCc--ccC------CCCEEEEECCC------CCCCEEEEE------------
Confidence 3679999999999999999998888773211 110 11234444421 289999987
Q ss_pred ceEEEeCCCeEEEEEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 353 NSMVQIGGDALCLGFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 353 ~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
.||||++|||++|+|||++++|||||+
T Consensus 252 ------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 499999999999999999999999994
No 22
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1e-43 Score=339.39 Aligned_cols=272 Identities=23% Similarity=0.359 Sum_probs=213.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCCCCceeeEEEEE
Q 014679 45 YVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPISNTGTHGDIRI 124 (420)
Q Consensus 45 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~~~~~~~G~~~~ 124 (420)
|+++|.||||+|++.|+|||||+++||+|..|..........+ .|....+..|.+..|.|.+.|+ + +.+.|.+++
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~Y~-~-g~~~g~~~~ 75 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRF---KYDSSKSSTYKDTGCTFSITYG-D-GSVTGGLGT 75 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCC---ccCccCCceeecCCCEEEEEEC-C-CeEEEEEEE
Confidence 7899999999999999999999999999998742211110000 0111112344478899999997 5 689999999
Q ss_pred EEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCCCC------CccHHHHhhhcCC-CCceEEecCCC
Q 014679 125 DVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGRSK------VALPSQLAAAFSL-KRKFALCLSPF 197 (420)
Q Consensus 125 D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~~~i-~~~Fs~~L~~~ 197 (420)
|+|+|++. .++++.|||++...........+||||||++. .+++.||.+++.| +++||+||.+.
T Consensus 76 D~v~~~~~---------~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~ 146 (283)
T cd05471 76 DTVTIGGL---------TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRD 146 (283)
T ss_pred eEEEECCE---------EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCC
Confidence 99999986 67899999999874322345689999999987 7899999999987 79999999873
Q ss_pred ----CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCccccccccCCC
Q 014679 198 ----DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKTLLSIDNEGV 273 (420)
Q Consensus 198 ----~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~g~ 273 (420)
..|.|+|||+|. .++.+++.|+|+.... ..+|.|.+++|.++++..... ...
T Consensus 147 ~~~~~~g~l~~Gg~d~-----~~~~~~~~~~p~~~~~-----------~~~~~v~l~~i~v~~~~~~~~--------~~~ 202 (283)
T cd05471 147 GDGGNGGELTFGGIDP-----SKYTGDLTYTPVVSNG-----------PGYWQVPLDGISVGGKSVISS--------SGG 202 (283)
T ss_pred CCCCCCCEEEEcccCc-----cccCCceEEEecCCCC-----------CCEEEEEeCeEEECCceeeec--------CCC
Confidence 699999999986 3466899999998752 579999999999998741111 124
Q ss_pred CcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCCceEEEEccCc
Q 014679 274 GGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQN 353 (420)
Q Consensus 274 ~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~ 353 (420)
..+||||||++++||++++++|.+++.+.... ...|+...+.. ...+|+|+|+|
T Consensus 203 ~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~----~~~~p~i~f~f------------- 256 (283)
T cd05471 203 GGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSP----CDTLPDITFTF------------- 256 (283)
T ss_pred cEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcc----cCcCCCEEEEE-------------
Confidence 68999999999999999999999998766531 12233333221 15799999998
Q ss_pred eEEEeCCCeEEEEEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 354 SMVQIGGDALCLGFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 354 y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
.+|||+.|||++|++||.+++|||||+
T Consensus 257 -----------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 489999999999999999999999984
No 23
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=6.5e-45 Score=353.59 Aligned_cols=300 Identities=20% Similarity=0.317 Sum_probs=228.2
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccC-ccccCCCCCCCCcceeccCCCCceeeEEE
Q 014679 44 QYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCN-LANAKACGGGICGAGPDNPISNTGTHGDI 122 (420)
Q Consensus 44 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~-~~~~~~c~~~~~~~~~~y~~~~~~~~G~~ 122 (420)
+|+++|.||||+|+++|++||||+++||++..|... ..|....+- ...+..|....+.+.+.|+ ++. +.|.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~-----~~~~~~~~y~~~~S~t~~~~~~~~~~~y~-~g~-~~G~~ 73 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSC-----SSCASSGFYNPSKSSTFSNQGKPFSISYG-DGS-VSGNL 73 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSH-----THHCTSC-BBGGGSTTEEEEEEEEEEEET-TEE-EEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccc-----cccccccccccccccccccceeeeeeecc-Ccc-ccccc
Confidence 699999999999999999999999999998766432 011111000 0011222234567899997 555 99999
Q ss_pred EEEEEEeeecCCCCCCCceecCcEEEeeccccccc-CCCCCcceEEecCCCC-------CccHHHHhhhcCC-CCceEEe
Q 014679 123 RIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQ-GLASGVVGIAGLGRSK-------VALPSQLAAAFSL-KRKFALC 193 (420)
Q Consensus 123 ~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~GIlGLg~~~-------~s~~~ql~~~~~i-~~~Fs~~ 193 (420)
++|+|+|++. .++++.||++...... ......+||||||++. .+++.+|.+++.| +++||++
T Consensus 74 ~~D~v~ig~~---------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~ 144 (317)
T PF00026_consen 74 VSDTVSIGGL---------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLY 144 (317)
T ss_dssp EEEEEEETTE---------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEE
T ss_pred ccceEeeeec---------cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhcccccccccee
Confidence 9999999886 7788999999885211 1234689999999742 4688999999999 7899999
Q ss_pred cCCC--CCceEEEcCCCCCCCCCccCCCCceeeeCcccCCCCCCCcCCCCCcceEeEEeEEEECCEEeecCccccccccC
Q 014679 194 LSPF--DDGAIVFGDGPYYDLNNFDVSKNLKYTPLFINKVNTASGFLGEPSVEYFIGVTSVHVNGKAVPLNKTLLSIDNE 271 (420)
Q Consensus 194 L~~~--~~G~l~fGg~d~~~~p~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ 271 (420)
|.+. ..|.|+|||+|. .++.+++.|+|+.. ..+|.+.+++|.++++......
T Consensus 145 l~~~~~~~g~l~~Gg~d~-----~~~~g~~~~~~~~~-------------~~~w~v~~~~i~i~~~~~~~~~-------- 198 (317)
T PF00026_consen 145 LNPSDSQNGSLTFGGYDP-----SKYDGDLVWVPLVS-------------SGYWSVPLDSISIGGESVFSSS-------- 198 (317)
T ss_dssp EESTTSSEEEEEESSEEG-----GGEESEEEEEEBSS-------------TTTTEEEEEEEEETTEEEEEEE--------
T ss_pred eeecccccchheeecccc-----ccccCceeccCccc-------------cccccccccccccccccccccc--------
Confidence 9986 359999999986 56778999999983 4799999999999998322111
Q ss_pred CCCcEEEecCccceeecHHHHHHHHHHHHHhCCcccccCCCCCCCcceeecCCCccccCCCcCeEEEEEeCCceEEEEcc
Q 014679 272 GVGGTKISTVNPYTVLETSIYKALVQAFASAMPKVARVAPVAPFGACFRLQDIGFTRIGPVVPQIDLVLQNKNVVWSIHG 351 (420)
Q Consensus 272 g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~i~~ 351 (420)
...++|||||++++||++++++|++.+...... .....+|... ..+|.|+|.|++ .+++|||
T Consensus 199 -~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~------~~~~~~c~~~---------~~~p~l~f~~~~--~~~~i~~ 260 (317)
T PF00026_consen 199 -GQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD------GVYSVPCNST---------DSLPDLTFTFGG--VTFTIPP 260 (317)
T ss_dssp -EEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC------SEEEEETTGG---------GGSEEEEEEETT--EEEEEEH
T ss_pred -ceeeecccccccccccchhhHHHHhhhcccccc------eeEEEecccc---------cccceEEEeeCC--EEEEecc
Confidence 246899999999999999999999998755321 1112345443 358999999997 9999999
Q ss_pred CceEEEeCCC--eEEE-EEEeCC-CCCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 352 QNSMVQIGGD--ALCL-GFVDGG-VNPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 352 ~~y~~~~~~~--~~C~-~~~~~~-~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
++|+.+.... ..|. .+.... ......+|||.+|||++|+|||.|++|||||+
T Consensus 261 ~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~ 316 (317)
T PF00026_consen 261 SDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQ 316 (317)
T ss_dssp HHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred hHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence 9999987653 3786 555411 12246799999999999999999999999996
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=4.3e-29 Score=219.00 Aligned_cols=153 Identities=35% Similarity=0.634 Sum_probs=126.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeeeC----CCCCCCCCccccCCCCcccCccccC----CCCCCCCcceeccCCCCc
Q 014679 45 YVTQIKQRTPLVPVKLTVHLGGNILWVDC----EKGYVSSTNKTARCGSAQCNLANAK----ACGGGICGAGPDNPISNT 116 (420)
Q Consensus 45 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c----~~c~~Sst~~~~~c~~~~C~~~~~~----~c~~~~~~~~~~y~~~~~ 116 (420)
|+++|+||||+|++.|++||||+++|++| -.+.+|++|+.++|.++.|...... .|.+..|.|.+.|+ +++
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~-~~s 79 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYG-DGS 79 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEET-TTE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccceeecC-CCc
Confidence 89999999999999999999999999999 3457899999999999999866542 33378899999998 899
Q ss_pred eeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCCCCCccHHHHhhhcCCCCceEEecCC
Q 014679 117 GTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGRSKVALPSQLAAAFSLKRKFALCLSP 196 (420)
Q Consensus 117 ~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~L~~ 196 (420)
.+.|.+++|+|+++...+. ...++++.|||++... ++....+||||||+.++||+.||.++ ..++|||||.+
T Consensus 80 ~~~G~l~~D~~~~~~~~~~----~~~~~~~~FGC~~~~~--g~~~~~~GilGLg~~~~Sl~sQl~~~--~~~~FSyCL~~ 151 (164)
T PF14543_consen 80 SSSGFLASDTLTFGSSSGG----SNSVPDFIFGCATSNS--GLFYGADGILGLGRGPLSLPSQLASS--SGNKFSYCLPS 151 (164)
T ss_dssp EEEEEEEEEEEEEEEESSS----SEEEEEEEEEEE-GGG--TSSTTEEEEEE-SSSTTSHHHHHHHH----SEEEEEB-S
T ss_pred cccCceEEEEEEecCCCCC----CceeeeEEEEeeeccc--cCCcCCCcccccCCCcccHHHHHHHh--cCCeEEEECCC
Confidence 9999999999999987421 2467789999999883 55558999999999999999999887 45999999998
Q ss_pred -C--CCceEEEcC
Q 014679 197 -F--DDGAIVFGD 206 (420)
Q Consensus 197 -~--~~G~l~fGg 206 (420)
. ..|.|+||+
T Consensus 152 ~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 152 SSPSSSGFLSFGD 164 (164)
T ss_dssp -SSSSEEEEEECS
T ss_pred CCCCCCEEEEeCc
Confidence 2 799999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=8.4e-27 Score=204.24 Aligned_cols=158 Identities=31% Similarity=0.576 Sum_probs=123.0
Q ss_pred ceEeEEeEEEECCEEeecCccccccccCCCCcEEEecCccceeecHHHHHHHHHHHHHhCCcc--cc-cCCCCCCCccee
Q 014679 244 EYFIGVTSVHVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKALVQAFASAMPKV--AR-VAPVAPFGACFR 320 (420)
Q Consensus 244 ~y~v~l~~i~vg~~~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l~~~i~~~~~~~--~~-~~~~~~~~~C~~ 320 (420)
+|.|+|++|+||++++.++...+++ +.+.+++||||||++++||+++|+++++++.+++... ++ ......+..||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5899999999999999999888776 5667899999999999999999999999999988633 22 234566789999
Q ss_pred ecCCCccccCCCcCeEEEEEeCCceEEEEccCceEEEeCCCeEEEEEEeCCCCCCCceeechhhccccEEEEeCCCCeEE
Q 014679 321 LQDIGFTRIGPVVPQIDLVLQNKNVVWSIHGQNSMVQIGGDALCLGFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLG 400 (420)
Q Consensus 321 ~~~~~~~~~~~~~P~i~f~f~g~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIG 400 (420)
.+.......+..+|+|+|+|.+ +.+++|++++|++..+++..|+++.+......+..|||..+|++++++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~-ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEG-GADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETT-SEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeC-CcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 8863222334689999999998 599999999999999888999999987222246799999999999999999999999
Q ss_pred Eee
Q 014679 401 FSD 403 (420)
Q Consensus 401 fa~ 403 (420)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 985
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.78 E-value=9.6e-19 Score=142.88 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=77.4
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCcc----ccCCCCCCCCcceeccCCCCceeeEEE
Q 014679 47 TQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLA----NAKACGGGICGAGPDNPISNTGTHGDI 122 (420)
Q Consensus 47 ~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~----~~~~c~~~~~~~~~~y~~~~~~~~G~~ 122 (420)
++|.||||||++.|+|||||+++||+|..|.. |....+... .+..+....|.|.+.|+ ++ .+.|.+
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~--------~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~-~g-~~~g~~ 70 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQS--------LAIYSHSSYDDPSASSTYSDNGCTFSITYG-TG-SLSGGL 70 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCC--------cccccccccCCcCCCCCCCCCCcEEEEEeC-CC-eEEEEE
Confidence 47999999999999999999999999987631 111111111 11223356799999997 54 678999
Q ss_pred EEEEEEeeecCCCCCCCceecCcEEEeecccccccC-CCCCcceEEec
Q 014679 123 RIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQG-LASGVVGIAGL 169 (420)
Q Consensus 123 ~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~~GIlGL 169 (420)
++|+|+|++. .++++.|||++...... .....+|||||
T Consensus 71 ~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 71 STDTVSIGDI---------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEEEECCE---------EECCEEEEEEEecCCccccccccccccCC
Confidence 9999999876 68899999998874321 23468999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.91 E-value=4.1e-05 Score=60.15 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=60.7
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCCCCceeeEEEE
Q 014679 44 QYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPISNTGTHGDIR 123 (420)
Q Consensus 44 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~~~~~~~G~~~ 123 (420)
.|++++.|+. +++.+++||||+.+|+.-.. .+.... .........+... ++........
T Consensus 2 ~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~------~~~l~~------------~~~~~~~~~~~~~-~G~~~~~~~~ 60 (96)
T cd05483 2 HFVVPVTING--QPVRFLLDTGASTTVISEEL------AERLGL------------PLTLGGKVTVQTA-NGRVRAARVR 60 (96)
T ss_pred cEEEEEEECC--EEEEEEEECCCCcEEcCHHH------HHHcCC------------CccCCCcEEEEec-CCCccceEEE
Confidence 6899999995 99999999999999986321 011100 0011223344443 5555666666
Q ss_pred EEEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCC
Q 014679 124 IDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGR 171 (420)
Q Consensus 124 ~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~ 171 (420)
.+.+++++. +++++.+....... . ..+||||+.+
T Consensus 61 ~~~i~ig~~---------~~~~~~~~v~d~~~--~---~~~gIlG~d~ 94 (96)
T cd05483 61 LDSLQIGGI---------TLRNVPAVVLPGDA--L---GVDGLLGMDF 94 (96)
T ss_pred cceEEECCc---------EEeccEEEEeCCcc--c---CCceEeChHH
Confidence 888999876 66677776665541 1 4899999863
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.11 E-value=0.0039 Score=51.61 Aligned_cols=102 Identities=11% Similarity=0.064 Sum_probs=63.2
Q ss_pred EEEeeCCCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCC
Q 014679 34 LRVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPI 113 (420)
Q Consensus 34 ~p~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~ 113 (420)
+|+.++ .++.|++++.|.. +++.+++|||++.+-++.+- .+.+.... ....-...+. ..
T Consensus 2 ~~i~~~-~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~------A~~Lgl~~-----------~~~~~~~~~~-ta 60 (121)
T TIGR02281 2 VQLAKD-GDGHFYATGRVNG--RNVRFLVDTGATSVALNEED------AQRLGLDL-----------NRLGYTVTVS-TA 60 (121)
T ss_pred EEEEEc-CCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHH------HHHcCCCc-----------ccCCceEEEE-eC
Confidence 567764 6889999999987 89999999999999885321 01111000 0001111122 11
Q ss_pred CCceeeEEEEEEEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCC
Q 014679 114 SNTGTHGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGR 171 (420)
Q Consensus 114 ~~~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~ 171 (420)
+|......+.-|.+++|+. .+.|+.+.+.... ...+|+||+.+
T Consensus 61 ~G~~~~~~~~l~~l~iG~~---------~~~nv~~~v~~~~------~~~~~LLGm~f 103 (121)
T TIGR02281 61 NGQIKAARVTLDRVAIGGI---------VVNDVDAMVAEGG------ALSESLLGMSF 103 (121)
T ss_pred CCcEEEEEEEeCEEEECCE---------EEeCcEEEEeCCC------cCCceEcCHHH
Confidence 3444445567789999886 6777777666542 11479999874
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.86 E-value=0.051 Score=41.68 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=50.9
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCCCCceeeEEEEEEE
Q 014679 47 TQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPISNTGTHGDIRIDV 126 (420)
Q Consensus 47 ~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~~~~~~~G~~~~D~ 126 (420)
+++.|+. +++.+++|||++.+.+.-.- .+....... .......+.- .++........-+.
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~------~~~l~~~~~-----------~~~~~~~~~~-~~g~~~~~~~~~~~ 60 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSL------AKKLGLKPR-----------PKSVPISVSG-AGGSVTVYRGRVDS 60 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHH------HHHcCCCCc-----------CCceeEEEEe-CCCCEEEEEEEEEE
Confidence 3677876 89999999999988875221 011111000 0111122222 24555555566678
Q ss_pred EEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecC
Q 014679 127 LSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLG 170 (420)
Q Consensus 127 v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg 170 (420)
+++++. ++.++.|-.... ....+||||+-
T Consensus 61 i~ig~~---------~~~~~~~~v~~~------~~~~~~iLG~d 89 (90)
T PF13650_consen 61 ITIGGI---------TLKNVPFLVVDL------GDPIDGILGMD 89 (90)
T ss_pred EEECCE---------EEEeEEEEEECC------CCCCEEEeCCc
Confidence 888875 566666655551 23579999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.06 E-value=0.2 Score=41.52 Aligned_cols=94 Identities=15% Similarity=0.058 Sum_probs=55.9
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcce-eccCCCCceee
Q 014679 41 ATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAG-PDNPISNTGTH 119 (420)
Q Consensus 41 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~-~~y~~~~~~~~ 119 (420)
....+++++.|+. +++.+++|||++.+++.-.. .+...+.. ...-++. ...+.++....
T Consensus 13 ~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~------a~~lgl~~------------~~~~~~~~~~~g~g~~~~~ 72 (124)
T cd05479 13 KVPMLYINVEING--VPVKAFVDSGAQMTIMSKAC------AEKCGLMR------------LIDKRFQGIAKGVGTQKIL 72 (124)
T ss_pred eeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHH------HHHcCCcc------------ccCcceEEEEecCCCcEEE
Confidence 4568899999998 89999999999999985221 01111100 0011122 12221334556
Q ss_pred EEEEEEEEEeeecCCCCCCCceecCcEEEeecccccccCCCCCcceEEecCC
Q 014679 120 GDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCGSEFVLQGLASGVVGIAGLGR 171 (420)
Q Consensus 120 G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GIlGLg~ 171 (420)
|....+.+.+++. .++ +.|.+.... ..|+|||+-+
T Consensus 73 g~~~~~~l~i~~~---------~~~-~~~~Vl~~~-------~~d~ILG~d~ 107 (124)
T cd05479 73 GRIHLAQVKIGNL---------FLP-CSFTVLEDD-------DVDFLIGLDM 107 (124)
T ss_pred eEEEEEEEEECCE---------Eee-eEEEEECCC-------CcCEEecHHH
Confidence 7777778888775 332 455544322 4799999863
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.95 E-value=0.18 Score=41.77 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.4
Q ss_pred ceeechhhccccEEEEeCCCCeEEE
Q 014679 377 SIVIGARQLENNLLQFDLATSRLGF 401 (420)
Q Consensus 377 ~~ILG~~flr~~y~vfD~e~~rIGf 401 (420)
..|||..||+.+-.+.|+.+++|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 3699999999999999999998853
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.82 E-value=0.18 Score=39.10 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=24.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeeeC
Q 014679 45 YVTQIKQRTPLVPVKLTVHLGGNILWVDC 73 (420)
Q Consensus 45 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c 73 (420)
|++++.|+. +++.+++||||+..++.-
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~ 27 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISE 27 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCH
Confidence 578999999 999999999999999863
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=90.43 E-value=1.4 Score=37.11 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=24.7
Q ss_pred eeechhhccccEEEEeCCCCeEEEee
Q 014679 378 IVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 378 ~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
.|||..+|+.|..+-|+.+++|-|..
T Consensus 106 vILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 106 VILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eEeccchHHhCCCEEEccCCEEEEeC
Confidence 79999999999999999999999974
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=87.43 E-value=4.2 Score=32.63 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.2
Q ss_pred ceeechhhccccEEEEeCCCCeE
Q 014679 377 SIVIGARQLENNLLQFDLATSRL 399 (420)
Q Consensus 377 ~~ILG~~flr~~y~vfD~e~~rI 399 (420)
..+||..||+.+-++.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 46999999999999999988763
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.20 E-value=1 Score=33.29 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=27.7
Q ss_pred CCceEEEEEEeCCCCceEEEEEEcCCCceeeeC
Q 014679 41 ATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDC 73 (420)
Q Consensus 41 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c 73 (420)
..+.+++++.||. +.+..++||||+...++.
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~ 35 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISE 35 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCH
Confidence 4578999999999 999999999999998863
No 36
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=83.31 E-value=12 Score=33.62 Aligned_cols=80 Identities=10% Similarity=0.073 Sum_probs=51.7
Q ss_pred eEEEEeeCCCCceEEEEEEeCCCCceEEEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceecc
Q 014679 32 LVLRVAKDTATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDN 111 (420)
Q Consensus 32 ~~~p~~~~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y 111 (420)
.++-|+++ .++.|.++..|-. |++..++|||-+.+-++-+.. +++.-+ -.....++.+.-
T Consensus 94 ~~v~Lak~-~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA------~RlGid-----------~~~l~y~~~v~T 153 (215)
T COG3577 94 QEVSLAKS-RDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDA------RRLGID-----------LNSLDYTITVST 153 (215)
T ss_pred eEEEEEec-CCCcEEEEEEECC--EEEEEEEecCcceeecCHHHH------HHhCCC-----------ccccCCceEEEc
Confidence 56667764 6899999999988 999999999999988864310 011000 001122333333
Q ss_pred CCCCceeeEEEEEEEEEeeec
Q 014679 112 PISNTGTHGDIRIDVLSIQST 132 (420)
Q Consensus 112 ~~~~~~~~G~~~~D~v~i~~~ 132 (420)
. +|......+--|.|.||+.
T Consensus 154 A-NG~~~AA~V~Ld~v~IG~I 173 (215)
T COG3577 154 A-NGRARAAPVTLDRVQIGGI 173 (215)
T ss_pred c-CCccccceEEeeeEEEccE
Confidence 3 4555556677799999986
No 37
>PF13650 Asp_protease_2: Aspartyl protease
Probab=82.83 E-value=1.9 Score=32.65 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=17.9
Q ss_pred cEEEecCccceeecHHHHHHH
Q 014679 275 GTKISTVNPYTVLETSIYKAL 295 (420)
Q Consensus 275 ~~ivDSGTt~~~lp~~~~~~l 295 (420)
.+++|||++.+.++++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 378999999999999887665
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=82.24 E-value=1.9 Score=33.80 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.7
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeeeCC
Q 014679 45 YVTQIKQRTPLVPVKLTVHLGGNILWVDCE 74 (420)
Q Consensus 45 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~ 74 (420)
-+.+|.+.. +++.+++||||+.+-++..
T Consensus 6 p~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 6 PYITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp SEEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred ceEEEeECC--EEEEEEEecCCCcceeccc
Confidence 367788888 8999999999999988643
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=80.05 E-value=3.4 Score=34.00 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=26.9
Q ss_pred CcceEeEEeEEEECCEEeecCccccccccCCCCcEEEecCccceeecHHHHHHH
Q 014679 242 SVEYFIGVTSVHVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKAL 295 (420)
Q Consensus 242 ~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l 295 (420)
.++|.+ .+.|+|+.+ .++||||.+.+.++.+..+++
T Consensus 9 ~g~~~v---~~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYA---TGRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEE---EEEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 456654 456788753 378999999999999986654
No 40
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=78.54 E-value=3.5 Score=31.78 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=24.5
Q ss_pred EEEECCEEeecCccccccccCCCCcEEEecCccceeecHHHHHHH
Q 014679 251 SVHVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKAL 295 (420)
Q Consensus 251 ~i~vg~~~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l 295 (420)
.+.|+|+.+. +.+|||++.+.++.+.+.++
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 4678888764 57999999999999987765
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=76.03 E-value=5.4 Score=29.36 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=18.0
Q ss_pred EEEecCccceeecHHHHHHH
Q 014679 276 TKISTVNPYTVLETSIYKAL 295 (420)
Q Consensus 276 ~ivDSGTt~~~lp~~~~~~l 295 (420)
+++|||.+-.+++.+.++.+
T Consensus 22 alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 22 ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEeCCCcceecCHHHHHHh
Confidence 78999999999999987766
No 42
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=73.89 E-value=7 Score=29.81 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=17.5
Q ss_pred cEEEecCccceeecHHHHHHH
Q 014679 275 GTKISTVNPYTVLETSIYKAL 295 (420)
Q Consensus 275 ~~ivDSGTt~~~lp~~~~~~l 295 (420)
.+++|||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 378999999999999876554
No 43
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=72.84 E-value=5.8 Score=30.29 Aligned_cols=20 Identities=15% Similarity=0.076 Sum_probs=17.7
Q ss_pred EEEecCccceeecHHHHHHH
Q 014679 276 TKISTVNPYTVLETSIYKAL 295 (420)
Q Consensus 276 ~ivDSGTt~~~lp~~~~~~l 295 (420)
+++|||.+.+.++++..+.+
T Consensus 12 fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 12 FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEECCCCeEEECHHHhhhc
Confidence 68999999999999887664
No 44
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=70.79 E-value=5.2 Score=30.87 Aligned_cols=24 Identities=4% Similarity=-0.014 Sum_probs=20.6
Q ss_pred EEEeCCCCceEEEEEEcCCCceeeeC
Q 014679 48 QIKQRTPLVPVKLTVHLGGNILWVDC 73 (420)
Q Consensus 48 ~i~iGtP~q~~~v~~DTGSs~~Wv~c 73 (420)
+++|+. |.+.+++|||+.++-+.-
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEcc
Confidence 467776 999999999999999863
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=68.65 E-value=5.8 Score=30.27 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.4
Q ss_pred EEEeCCCCceEEEEEEcCCCceeeeCC
Q 014679 48 QIKQRTPLVPVKLTVHLGGNILWVDCE 74 (420)
Q Consensus 48 ~i~iGtP~q~~~v~~DTGSs~~Wv~c~ 74 (420)
.+.|.. +++.+++|||++.+-+...
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHH
Confidence 356666 8999999999999998643
No 46
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=62.81 E-value=17 Score=32.74 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=28.3
Q ss_pred CcceEeEEeEEEECCEEeecCccccccccCCCCcEEEecCccceeecHHHHHHH
Q 014679 242 SVEYFIGVTSVHVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKAL 295 (420)
Q Consensus 242 ~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l 295 (420)
.++|.+ ...|||+.+. .++|||.|.+.|+++..+++
T Consensus 103 ~GHF~a---~~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEA---NGRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEE---EEEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 566654 5678998875 57999999999999886654
No 47
>PF15284 PAGK: Phage-encoded virulence factor
Probab=58.73 E-value=7.7 Score=27.42 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=20.5
Q ss_pred ChhhHHHHHHHHHHHHhhcccccc
Q 014679 1 MSVAQSFLLLCSLLIFSLSPITAQ 24 (420)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (420)
|+.+-++++.++|++++++.++.+
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasa 24 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASA 24 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHH
Confidence 888999999999999998776655
No 48
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=58.63 E-value=44 Score=28.99 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=17.5
Q ss_pred cEEEecCccceeecHHHHHHH
Q 014679 275 GTKISTVNPYTVLETSIYKAL 295 (420)
Q Consensus 275 ~~ivDSGTt~~~lp~~~~~~l 295 (420)
.++||||+...+...+..+.|
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEeCCCccceeehhhHHhh
Confidence 588999999999988876555
No 49
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=57.99 E-value=26 Score=31.47 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=20.2
Q ss_pred ceeechhhccccEEEEeCCCCeEEEee
Q 014679 377 SIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 377 ~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
..|||.+|+|.|+=-.+++ .+|-|-.
T Consensus 92 d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 92 DIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 4799999999888776665 4677763
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=56.97 E-value=15 Score=28.57 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.8
Q ss_pred eEEEECCEEeecCccccccccCCCCcEEEecCccceeecHHH
Q 014679 250 TSVHVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSI 291 (420)
Q Consensus 250 ~~i~vg~~~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~ 291 (420)
..|.++|+.+. +++|||+..+.++.+.
T Consensus 8 i~v~i~g~~i~---------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 8 ITVKINGKKIK---------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTEEEE---------------EEEETTBSSEEESSGG
T ss_pred EEEeECCEEEE---------------EEEecCCCcceecccc
Confidence 34667777553 7899999999999763
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=54.34 E-value=16 Score=31.57 Aligned_cols=41 Identities=7% Similarity=0.133 Sum_probs=27.0
Q ss_pred EEEEeeCC--CCceEEEEEEeCCCCceEEEEEEcCCCceeeeC
Q 014679 33 VLRVAKDT--ATLQYVTQIKQRTPLVPVKLTVHLGGNILWVDC 73 (420)
Q Consensus 33 ~~p~~~~~--~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c 73 (420)
..||.... -...=..++.++.-..+..++|||||+...+..
T Consensus 19 ~~PIV~~~~~Pevg~T~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 19 TCPIVHYIAIPEVGKTAIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred eeeeEEEeeccccCcEEEEEEeecCcEEEEEEeCCCccceeeh
Confidence 44555421 122334455556666999999999999988864
No 52
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=49.56 E-value=23 Score=33.32 Aligned_cols=44 Identities=5% Similarity=0.097 Sum_probs=30.2
Q ss_pred eeEEEEeeCCCCceEEEE---EEeCC---CCceEEEEEEcCCCceeeeCC
Q 014679 31 ALVLRVAKDTATLQYVTQ---IKQRT---PLVPVKLTVHLGGNILWVDCE 74 (420)
Q Consensus 31 ~~~~p~~~~~~~~~Y~~~---i~iGt---P~q~~~v~~DTGSs~~Wv~c~ 74 (420)
..-+|+.++.....|.++ |+||. +.....+++|||++.+.+|.+
T Consensus 145 i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 145 VTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred eeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 455677654334567665 68874 234567999999999999853
No 53
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=49.34 E-value=22 Score=27.61 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=17.9
Q ss_pred cEEEecCccceeecHHHHHHH
Q 014679 275 GTKISTVNPYTVLETSIYKAL 295 (420)
Q Consensus 275 ~~ivDSGTt~~~lp~~~~~~l 295 (420)
.+.+|||++...+|...++.+
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEecCCEEEeccHHHHhhh
Confidence 356999999999999887765
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=42.21 E-value=40 Score=27.90 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=23.2
Q ss_pred eEEEECCEEeecCccccccccCCCCcEEEecCccceeecHHHHHHH
Q 014679 250 TSVHVNGKAVPLNKTLLSIDNEGVGGTKISTVNPYTVLETSIYKAL 295 (420)
Q Consensus 250 ~~i~vg~~~~~~~~~~~~~~~~g~~~~ivDSGTt~~~lp~~~~~~l 295 (420)
-.+++||+.+. +.+|||+-.+.++.+.++++
T Consensus 27 I~~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 27 INCKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 35678888763 78999999999999987764
No 55
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.73 E-value=20 Score=29.45 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=17.5
Q ss_pred EEEecCcc-ceeecHHHHHHH
Q 014679 276 TKISTVNP-YTVLETSIYKAL 295 (420)
Q Consensus 276 ~ivDSGTt-~~~lp~~~~~~l 295 (420)
.++|||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 37999999 999999998775
No 56
>PLN03146 aspartyl protease family protein; Provisional
Probab=39.22 E-value=47 Score=33.72 Aligned_cols=43 Identities=7% Similarity=0.082 Sum_probs=29.0
Q ss_pred eeEEEEeeCCCCceEEEE---EEeCC-----CCce------EEEEEEcCCCceeeeC
Q 014679 31 ALVLRVAKDTATLQYVTQ---IKQRT-----PLVP------VKLTVHLGGNILWVDC 73 (420)
Q Consensus 31 ~~~~p~~~~~~~~~Y~~~---i~iGt-----P~q~------~~v~~DTGSs~~Wv~c 73 (420)
....|+........|+++ |+||. |+-. -.++||||++.++++-
T Consensus 267 ~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~ 323 (431)
T PLN03146 267 VVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPS 323 (431)
T ss_pred ceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCH
Confidence 455787753334567765 68886 2211 2589999999999974
No 57
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=38.61 E-value=48 Score=27.40 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=21.5
Q ss_pred CceEEEEEEeCCCCceEEEEEEcCCCceeee
Q 014679 42 TLQYVTQIKQRTPLVPVKLTVHLGGNILWVD 72 (420)
Q Consensus 42 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 72 (420)
....|++++|+. +++..++|||.-.+-+.
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims 50 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMS 50 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEE
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccC
Confidence 457899999999 99999999999988875
No 58
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=37.27 E-value=57 Score=30.26 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=32.0
Q ss_pred CceeEEEEeeCCCCceEEEE---EEeCC-----CCceEEEEEEcCCCceeeeCC
Q 014679 29 PKALVLRVAKDTATLQYVTQ---IKQRT-----PLVPVKLTVHLGGNILWVDCE 74 (420)
Q Consensus 29 ~~~~~~p~~~~~~~~~Y~~~---i~iGt-----P~q~~~v~~DTGSs~~Wv~c~ 74 (420)
......|+... ....|.+. |.||. ......++||||++.+|+|..
T Consensus 167 ~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 167 GDLTYTPVVSN-GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred CceEEEecCCC-CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 44566777763 24566655 57776 246789999999999999853
No 59
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=37.14 E-value=63 Score=31.81 Aligned_cols=111 Identities=17% Similarity=0.111 Sum_probs=56.4
Q ss_pred ceEEEEEEeCCCC----ceE-EEEEEcCCCceeeeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCCCCce
Q 014679 43 LQYVTQIKQRTPL----VPV-KLTVHLGGNILWVDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPISNTG 117 (420)
Q Consensus 43 ~~Y~~~i~iGtP~----q~~-~v~~DTGSs~~Wv~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~~~~~ 117 (420)
..-++.|+|=-|. |.+ +|++||||.=|=|..+.- .++....++-... ....-.+| ..| ..+.
T Consensus 22 N~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl-~~~l~~~Lp~~t~--~g~~laEC--------~~F--~sgy 88 (370)
T PF11925_consen 22 NIPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASAL-PSSLAGSLPQQTG--GGAPLAEC--------AQF--ASGY 88 (370)
T ss_pred cceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhh-chhhhccCCcccC--CCcchhhh--------hhc--cCcc
Confidence 3446666664443 455 799999999776653210 0000001110000 00000122 133 3577
Q ss_pred eeEEEEEEEEEeeecCCCCCCCceecCcEEEeec----------cccc--ccCCCCCcceEEecCCC
Q 014679 118 THGDIRIDVLSIQSTDGRNPGRAVTVPNFIFLCG----------SEFV--LQGLASGVVGIAGLGRS 172 (420)
Q Consensus 118 ~~G~~~~D~v~i~~~~~~~~~~~~~~~~~~fg~~----------~~~~--~~~~~~~~~GIlGLg~~ 172 (420)
.-|-+.+-.|+|++.. ...+|=+.++-. .... ......++.||||+|.-
T Consensus 89 tWGsVr~AdV~igge~------A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 89 TWGSVRTADVTIGGET------ASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred cccceEEEEEEEcCee------ccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 8899999999999862 124444445432 1110 01113468999999863
No 60
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=34.40 E-value=67 Score=29.95 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=30.4
Q ss_pred CceeEEEEeeCC-CCceEEEE---EEeCCC-------------CceEEEEEEcCCCceeeeCC
Q 014679 29 PKALVLRVAKDT-ATLQYVTQ---IKQRTP-------------LVPVKLTVHLGGNILWVDCE 74 (420)
Q Consensus 29 ~~~~~~p~~~~~-~~~~Y~~~---i~iGtP-------------~q~~~v~~DTGSs~~Wv~c~ 74 (420)
....-+|+..+. ....|.++ |+||.- .....+++|||++.+.+|-.
T Consensus 131 ~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 131 SGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 445677776642 23456554 788862 23456899999999999743
No 61
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=34.35 E-value=3e+02 Score=27.14 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=29.9
Q ss_pred EE-EEEEeCCCCCCCceeechhhccccEEEEeCCCCeEEEee
Q 014679 363 LC-LGFVDGGVNPRTSIVIGARQLENNLLQFDLATSRLGFSD 403 (420)
Q Consensus 363 ~C-~~~~~~~~~~~~~~ILG~~flr~~y~vfD~e~~rIGfa~ 403 (420)
.| +.++...+ .-..||...||+|-..-|++++++-+..
T Consensus 307 ~c~ftV~d~~~---~d~llGLd~Lrr~~ccIdL~~~~L~ig~ 345 (380)
T KOG0012|consen 307 PCSFTVLDRRD---MDLLLGLDMLRRHQCCIDLKTNVLRIGN 345 (380)
T ss_pred ccceEEecCCC---cchhhhHHHHHhccceeecccCeEEecC
Confidence 47 46665432 2468999999999999999999998874
No 62
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=31.47 E-value=77 Score=30.50 Aligned_cols=40 Identities=8% Similarity=-0.063 Sum_probs=26.8
Q ss_pred eeEEEEeeCCCCceEEEE---EEeCCC-----CceEEEEEEcCCCceeeeC
Q 014679 31 ALVLRVAKDTATLQYVTQ---IKQRTP-----LVPVKLTVHLGGNILWVDC 73 (420)
Q Consensus 31 ~~~~p~~~~~~~~~Y~~~---i~iGtP-----~q~~~v~~DTGSs~~Wv~c 73 (420)
..-+|+.+ ...|.++ |+||.. .+...+++|||++.+++|-
T Consensus 179 l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~ 226 (317)
T cd06098 179 HTYVPVTR---KGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPT 226 (317)
T ss_pred eEEEecCc---CcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCH
Confidence 34455543 3456565 678762 2346799999999999874
No 63
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=31.33 E-value=47 Score=31.58 Aligned_cols=45 Identities=11% Similarity=-0.023 Sum_probs=30.1
Q ss_pred CceeEEEEeeCCC-CceEEEE---EEeCCCC--------ceEEEEEEcCCCceeeeC
Q 014679 29 PKALVLRVAKDTA-TLQYVTQ---IKQRTPL--------VPVKLTVHLGGNILWVDC 73 (420)
Q Consensus 29 ~~~~~~p~~~~~~-~~~Y~~~---i~iGtP~--------q~~~v~~DTGSs~~Wv~c 73 (420)
+....+|+..+.. ...|.++ |+||.-. ....+++|||++++++|-
T Consensus 131 g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~ 187 (299)
T cd05472 131 AGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPP 187 (299)
T ss_pred CCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCH
Confidence 3456677776432 3467665 6888521 223689999999999974
No 64
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=30.84 E-value=62 Score=25.82 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=37.3
Q ss_pred EEEEeCCCC----ceEEEEEEcCCCcee-eeCCCCCCCCCccccCCCCcccCccccCCCCCCCCcceeccCCCCceeeEE
Q 014679 47 TQIKQRTPL----VPVKLTVHLGGNILW-VDCEKGYVSSTNKTARCGSAQCNLANAKACGGGICGAGPDNPISNTGTHGD 121 (420)
Q Consensus 47 ~~i~iGtP~----q~~~v~~DTGSs~~W-v~c~~c~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~y~~~~~~~~G~ 121 (420)
+++.+..|. -++.+++|||.+..- ++.+- .+.+.- ... -.....-. +|....-.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~------a~~lgl----------~~~----~~~~~~tA-~G~~~~~~ 60 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDI------VNKLGL----------PEL----DQRRVYLA-DGREVLTD 60 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHH------HHHcCC----------Ccc----cCcEEEec-CCcEEEEE
Confidence 577888873 267899999999664 54321 111100 000 01122222 56667777
Q ss_pred EEEEEEEeeec
Q 014679 122 IRIDVLSIQST 132 (420)
Q Consensus 122 ~~~D~v~i~~~ 132 (420)
+..+.+.+++.
T Consensus 61 v~~~~v~igg~ 71 (107)
T TIGR03698 61 VAKASIIINGL 71 (107)
T ss_pred EEEEEEEECCE
Confidence 88888888775
No 65
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=30.43 E-value=66 Score=26.88 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=24.4
Q ss_pred ceEEEEEEeCCCCceEEEEEEcCCCceeee
Q 014679 43 LQYVTQIKQRTPLVPVKLTVHLGGNILWVD 72 (420)
Q Consensus 43 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 72 (420)
..-.+.+.|.+ ++..++||+|++...+.
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs 47 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFIS 47 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEcc
Confidence 45677889999 99999999999998885
No 66
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=29.72 E-value=76 Score=29.78 Aligned_cols=42 Identities=5% Similarity=-0.080 Sum_probs=29.0
Q ss_pred ceeEEEEeeCCCCceEEEE---EEeCCC----CceEEEEEEcCCCceeeeC
Q 014679 30 KALVLRVAKDTATLQYVTQ---IKQRTP----LVPVKLTVHLGGNILWVDC 73 (420)
Q Consensus 30 ~~~~~p~~~~~~~~~Y~~~---i~iGtP----~q~~~v~~DTGSs~~Wv~c 73 (420)
...-+|+..+ ...|.++ |+||.- .....++||||++.+++|-
T Consensus 166 ~l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~ 214 (278)
T cd06097 166 EISWTPVDNS--SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPD 214 (278)
T ss_pred ceEEEEccCC--CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCH
Confidence 4456676652 3456555 567742 4567899999999999884
No 67
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=27.58 E-value=85 Score=29.55 Aligned_cols=44 Identities=9% Similarity=0.174 Sum_probs=28.8
Q ss_pred eeEEEEeeCCCC---ceEEEE---EEeCCC-------CceEEEEEEcCCCceeeeCC
Q 014679 31 ALVLRVAKDTAT---LQYVTQ---IKQRTP-------LVPVKLTVHLGGNILWVDCE 74 (420)
Q Consensus 31 ~~~~p~~~~~~~---~~Y~~~---i~iGtP-------~q~~~v~~DTGSs~~Wv~c~ 74 (420)
...+|+..+... ..|.++ |.+|.. .....++||||++.+++|-.
T Consensus 139 ~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~ 195 (295)
T cd05474 139 LVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSD 195 (295)
T ss_pred eEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHH
Confidence 455666654321 456554 677752 34568899999999999743
No 68
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=24.51 E-value=94 Score=30.01 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=26.9
Q ss_pred eEEEEeeCCCCceEEEE---EEeCCC------CceEEEEEEcCCCceeeeC
Q 014679 32 LVLRVAKDTATLQYVTQ---IKQRTP------LVPVKLTVHLGGNILWVDC 73 (420)
Q Consensus 32 ~~~p~~~~~~~~~Y~~~---i~iGtP------~q~~~v~~DTGSs~~Wv~c 73 (420)
.-+|+.+. ..|.++ |+||.. .....+++|||++.+++|.
T Consensus 200 ~~~p~~~~---~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~ 247 (326)
T cd06096 200 VWTPITRK---YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPE 247 (326)
T ss_pred eEEeccCC---ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCH
Confidence 44555542 466665 678853 2456689999999999984
No 69
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=23.88 E-value=97 Score=29.98 Aligned_cols=40 Identities=8% Similarity=-0.028 Sum_probs=26.9
Q ss_pred eeEEEEeeCCCCceEEEE---EEeCCC---CceEEEEEEcCCCceeeeC
Q 014679 31 ALVLRVAKDTATLQYVTQ---IKQRTP---LVPVKLTVHLGGNILWVDC 73 (420)
Q Consensus 31 ~~~~p~~~~~~~~~Y~~~---i~iGtP---~q~~~v~~DTGSs~~Wv~c 73 (420)
...+|+.. ...|.++ +.||.- .++..++||||++.+++|-
T Consensus 181 l~~~p~~~---~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~ 226 (329)
T cd05485 181 FTYLPVTR---KGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPV 226 (329)
T ss_pred eEEEEcCC---ceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCH
Confidence 45566643 3456655 567752 2345799999999999874
No 70
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=1.4e+02 Score=29.82 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=29.9
Q ss_pred ceeEEEEeeCCCCceEEEE---EEeCC----CCce-----EEEEEEcCCCceeeeC
Q 014679 30 KALVLRVAKDTATLQYVTQ---IKQRT----PLVP-----VKLTVHLGGNILWVDC 73 (420)
Q Consensus 30 ~~~~~p~~~~~~~~~Y~~~---i~iGt----P~q~-----~~v~~DTGSs~~Wv~c 73 (420)
...-+|+..... ..|.+. |.||. ++-. ..+++|||++++++|.
T Consensus 230 ~l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~ 284 (398)
T KOG1339|consen 230 SLTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPT 284 (398)
T ss_pred ceEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccH
Confidence 355788887543 466554 66896 3222 4579999999999984
No 71
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=20.24 E-value=1.2e+02 Score=29.95 Aligned_cols=44 Identities=9% Similarity=-0.018 Sum_probs=28.4
Q ss_pred ceeEEEEeeCC-CCceEEEE---EEeCCCCc-------------eEEEEEEcCCCceeeeC
Q 014679 30 KALVLRVAKDT-ATLQYVTQ---IKQRTPLV-------------PVKLTVHLGGNILWVDC 73 (420)
Q Consensus 30 ~~~~~p~~~~~-~~~~Y~~~---i~iGtP~q-------------~~~v~~DTGSs~~Wv~c 73 (420)
.....|+..+. ....|+++ |+||.-.- .--++||||++.+.++-
T Consensus 185 ~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~ 245 (362)
T cd05489 185 SLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRS 245 (362)
T ss_pred CccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECH
Confidence 34566666543 23567666 78885211 12589999999999874
Done!