Query 014682
Match_columns 420
No_of_seqs 444 out of 1205
Neff 11.2
Searched_HMMs 13730
Date Mon Mar 25 15:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014682.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014682hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 6.8E-37 4.9E-41 284.5 33.3 371 3-412 52-429 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 100.0 4.3E-29 3.1E-33 228.4 28.7 356 2-412 35-398 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 6.3E-12 4.6E-16 114.7 20.2 149 252-412 54-202 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 99.4 2.9E-13 2.1E-17 122.1 9.5 140 18-173 261-403 (417)
5 d3proc1 d.52.1.1 (C:6-85) Alph 23.7 24 0.0017 21.5 2.2 11 1-11 7-17 (80)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 9.1 1E+02 0.0074 13.7 3.6 11 165-175 18-28 (30)
7 d2csba2 a.60.2.4 (A:294-350) T 5.5 1.7E+02 0.012 15.0 1.7 13 38-50 7-19 (57)
8 d2iuba2 f.17.3.1 (A:286-349) M 5.2 2E+02 0.015 15.9 2.3 16 397-412 44-59 (64)
9 d3b45a1 f.51.1.1 (A:91-270) Gl 4.5 5.2E+02 0.038 17.4 7.5 33 275-307 69-101 (180)
10 d1u69a_ d.32.1.7 (A:) Hypothet 4.1 62 0.0046 22.5 -0.9 16 35-50 102-117 (156)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=6.8e-37 Score=284.51 Aligned_cols=371 Identities=12% Similarity=0.027 Sum_probs=268.2
Q ss_pred ccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHH
Q 014682 3 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV----NFWMAVLTRFL 78 (420)
Q Consensus 3 ~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l 78 (420)
+|+|+|++| .|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++ +++.+++.|++
T Consensus 52 ~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (447)
T d1pw4a_ 52 VEQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFL 125 (447)
T ss_dssp TSSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHH
T ss_pred HHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHH
Confidence 468999999 99999999999999999999999999999999999999999999988764 67889999999
Q ss_pred hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHH
Q 014682 79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 157 (420)
Q Consensus 79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 157 (420)
.|++.|...+. .+++.|++|+|+|++++++.+.+.++|..++|.+++.+.+. ..+||+.+ .+.+
T Consensus 126 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~------~~~w~~~~---------~~~~ 190 (447)
T d1pw4a_ 126 CGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW------FNDWHAAL---------YMPA 190 (447)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH------TCCSTTCT---------HHHH
T ss_pred HHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh------hhcccccc---------hhhh
Confidence 99999988887 99999999999999999999999999999999999887762 23555554 4444
Q ss_pred HHHHH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHH
Q 014682 158 LFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYS 236 (420)
Q Consensus 158 ~~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (420)
+..++ .++..+..+|+|++.+...+++.+. +..++..++.+++....+...++.+++|.++......++.........
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (447)
T d1pw4a_ 191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGIL 269 (447)
T ss_dssp HHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcch
Confidence 44444 3445566666665543332222111 111111111112222233345678889999888888888877777888
Q ss_pred HHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014682 237 EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGL 316 (420)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (420)
.+.+.|+.+. .+++..+.+.......+..+++.+ +.+++.||.++++........................ ..
T Consensus 270 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 342 (447)
T d1pw4a_ 270 DWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA-GN 342 (447)
T ss_dssp HHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT-TC
T ss_pred hhhhhhcccc-----cccccchhhhhhhcchhhhhhhhh-hhhhhhhhccccccccccchhHHHHHHHHHHHHhccc-cc
Confidence 8888888766 789999999999999999999987 7778888877654333333222222222111111111 11
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHH-HHHhhhhhhHHHHhhhhccCCCCCCCchHH
Q 014682 317 AFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLF-KAAGPAGGGALFSWAQKRLDASFLPGSQMV 395 (420)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g-~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~ 395 (420)
.....+..+..++......+.......|.+|++.||++.|+.+.+.+++ ..++|.+.|.+.|.. |++..
T Consensus 343 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~----------g~~~~ 412 (447)
T d1pw4a_ 343 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------GWDGG 412 (447)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ChHHH
Confidence 2223333344455556677788889999999999999999999988874 567899999999988 88888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 014682 396 FFVLNVVEAIGVLMTFK 412 (420)
Q Consensus 396 f~~~~~~~~~~~~~~~~ 412 (420)
|.+.+++.+++.++...
T Consensus 413 ~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 413 FMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777776655543
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=4.3e-29 Score=228.44 Aligned_cols=356 Identities=11% Similarity=0.076 Sum_probs=239.4
Q ss_pred cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHH----HHHH
Q 014682 2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV----LTRF 77 (420)
Q Consensus 2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~----~~r~ 77 (420)
++++|.|++| .|++.+++.+++.++++++|+++||+|||++++.+..+..++..+..+.++..... +.+.
T Consensus 35 ~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T d1pv7a_ 35 HDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI 108 (417)
T ss_dssp HHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHH
T ss_pred HHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4678999999 99999999999999999999999999999999999999999998888877665543 4444
Q ss_pred Hhhhhccchhhh-Hhhhhhhchh--hhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHH
Q 014682 78 LLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 154 (420)
Q Consensus 78 l~G~~~g~~~~~-~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~ 154 (420)
+.+.+.+..... .....+..++ +++.+..+........+..++|.+++.+.+ .+| ++....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~--------~~~~~~ 172 (417)
T d1pv7a_ 109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--------INN--------QFVFWL 172 (417)
T ss_dssp HTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH--------HCH--------HHHHHH
T ss_pred HhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc--------ccc--------cccccc
Confidence 444444443332 3333333332 345567778888889999999999999886 122 122223
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhh
Q 014682 155 CISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMA 234 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (420)
......+...+..+..+|++++.++++++++.. ++.......+..+++..+...............
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (417)
T d1pv7a_ 173 GSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp HHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------ccccccccccccccccccchhhhhHHHHHHHHh
Confidence 333333444455566666655443322111110 111112223334444444444333333333333
Q ss_pred HHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014682 235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF 314 (420)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (420)
.......+.... ....+.+....+.......++..++.. ..+++.||.++++.+..+..+..+..+.+...++
T Consensus 239 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---- 311 (417)
T d1pv7a_ 239 FDQQFANFFTSF--FATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---- 311 (417)
T ss_dssp HHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC----
T ss_pred hhcccccccccc--ccccccchhhhcccccccccccccchh-hhhhhhcccccccchhhhHHHHHHhhhccccccc----
Confidence 333333333222 222456667777778887788888776 7778888889999998888887777666655332
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHH-HHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCch
Q 014682 315 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAM-TGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQ 393 (420)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~-~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~ 393 (420)
.....+...+.++......+....+.+|.+|++.|+++.|+.. ....+|..++|.+.|.+.|.. |++
T Consensus 312 --~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~----------g~~ 379 (417)
T d1pv7a_ 312 --ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------GFQ 379 (417)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH----------CHH
T ss_pred --cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CHH
Confidence 1223344445556667788889999999999999999999865 556799999999999999998 899
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 014682 394 MVFFVLNVVEAIGVLMTFK 412 (420)
Q Consensus 394 ~~f~~~~~~~~~~~~~~~~ 412 (420)
..|++.+++.++..++..+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 380 GAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888887776655
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.42 E-value=6.3e-12 Score=114.74 Aligned_cols=149 Identities=8% Similarity=0.003 Sum_probs=120.0
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014682 252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS 331 (420)
Q Consensus 252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (420)
.|++..+.|++.+...++..++++ ..+++.||+|||+.+..+.++..++.++......... ....+++..++.+++.
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~-~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~ 130 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQ 130 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh--hHHHHHHHHHHHHHhh
Confidence 699999999999999999999988 7888899999999999999888887777665443221 1223444455556666
Q ss_pred HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014682 332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 411 (420)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~ 411 (420)
....+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+... +|+..|++.+.+.++..++.+
T Consensus 131 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~---------~w~~~~~~~~~~~~~~~~~~~ 201 (447)
T d1pw4a_ 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN---------DWHAALYMPAFCAILVALFAF 201 (447)
T ss_dssp HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC---------CSTTCTHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh---------cccccchhhhhhHHHHHHHHH
Confidence 77788889999999999999999999999999999999999998887763 688888888777776666555
Q ss_pred h
Q 014682 412 K 412 (420)
Q Consensus 412 ~ 412 (420)
.
T Consensus 202 ~ 202 (447)
T d1pw4a_ 202 A 202 (447)
T ss_dssp H
T ss_pred H
Confidence 4
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.40 E-value=2.9e-13 Score=122.07 Aligned_cols=140 Identities=19% Similarity=0.142 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014682 18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 96 (420)
Q Consensus 18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~ 96 (420)
.+...+...++..++..+.+++.||+|||+.+..+..+.+++.+...+.++.+.+++..++.|++.+...+. .+++.|.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 340 (417)
T d1pv7a_ 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999999999999999999999999999999999999999999998888887 9999999
Q ss_pred chhhhhhhHHHHH-HHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHHHH-HHHHhcccc
Q 014682 97 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPET 173 (420)
Q Consensus 97 ~~~~~r~~~~~~~-~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~e~ 173 (420)
+|+|+|+++.++. +....+|..++|.++|++.+ ..|++. .+.+.++..++.. +..+.++++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~-------~~g~~~---------~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------SIGFQG---------AYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-------HHCHHH---------HHHHHHHHHHHHHHHHHHHSCCS
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCHHH---------HHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999985 56778999999999999998 455443 3455555555543 444555443
No 5
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=23.66 E-value=24 Score=21.45 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=8.5
Q ss_pred Ccccccccccc
Q 014682 1 MIKDFQIAKRE 11 (420)
Q Consensus 1 i~~~~~~s~~~ 11 (420)
|++|||++++|
T Consensus 7 mqRDLgLt~~q 17 (80)
T d3proc1 7 MQRDLGIFPTQ 17 (80)
T ss_dssp HHHHHCCCGGG
T ss_pred HHHHcCCCHHH
Confidence 46788888887
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.09 E-value=1e+02 Score=13.73 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=6.6
Q ss_pred HHHHhcccccC
Q 014682 165 IAAFWLPETLH 175 (420)
Q Consensus 165 ~~~~~l~e~~~ 175 (420)
+...+.+|+|+
T Consensus 18 ffaiffreppr 28 (30)
T d2axtt1 18 FFAIFFREPPR 28 (30)
T ss_dssp HHHHHTSCCCC
T ss_pred HHHHHhcCCCC
Confidence 34556677664
No 7
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=5.47 E-value=1.7e+02 Score=14.98 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=8.7
Q ss_pred hhhhhcCCchhHH
Q 014682 38 LVADRYGRKPVII 50 (420)
Q Consensus 38 ~l~dr~Grk~~l~ 50 (420)
.+-||+|.|.-..
T Consensus 7 klqdrygiredva 19 (57)
T d2csba2 7 KLQDRYGIREDVA 19 (57)
T ss_dssp HHHHHHCCCHHHH
T ss_pred ehhhhhccHHHHH
Confidence 5678888776543
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.24 E-value=2e+02 Score=15.87 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 014682 397 FVLNVVEAIGVLMTFK 412 (420)
Q Consensus 397 ~~~~~~~~~~~~~~~~ 412 (420)
++.++...++.+..+.
T Consensus 44 ~~~~~~~~~~~~~~~~ 59 (64)
T d2iuba2 44 VVLAVMGVIAVIMVVY 59 (64)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444433333
No 9
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=4.54 E-value=5.2e+02 Score=17.44 Aligned_cols=33 Identities=15% Similarity=-0.076 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 014682 275 LSLYPFLERILGPIMVARIAGVLTIPLLTSYPY 307 (420)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (420)
...+..+.++.|+++...........+.+....
T Consensus 69 ~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~ 101 (180)
T d3b45a1 69 WYLGGAVEKRLGSGKLIVITLISALLSGYVQQK 101 (180)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhheeeeeHHHHHHHHHHHH
Confidence 446778888889888776655555554444333
No 10
>d1u69a_ d.32.1.7 (A:) Hypothetical protein PA2721 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.11 E-value=62 Score=22.46 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=12.8
Q ss_pred hhhhhhhhcCCchhHH
Q 014682 35 FWGLVADRYGRKPVII 50 (420)
Q Consensus 35 ~~g~l~dr~Grk~~l~ 50 (420)
+.|++.||||-.+.+.
T Consensus 102 ~~G~v~DkFGV~Wqi~ 117 (156)
T d1u69a_ 102 ACGWCRDKWGISWQIT 117 (156)
T ss_dssp STTEEECTTSCEEEEE
T ss_pred CCeEEECCCCCEEEeC
Confidence 4689999999887654
Done!