Query 014683
Match_columns 420
No_of_seqs 213 out of 1596
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:31:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2788 Glycosyltransferase [C 100.0 1.4E-57 3.1E-62 439.3 12.2 343 72-418 5-409 (418)
2 TIGR02380 ECA_wecA undecapreny 100.0 1.6E-54 3.5E-59 435.7 31.7 297 80-414 4-308 (346)
3 PRK15119 undecaprenyl-phosphat 100.0 5.4E-54 1.2E-58 434.4 32.9 296 81-414 11-312 (365)
4 cd06856 GT_GPT_archaea UDP-Glc 100.0 1.8E-53 3.9E-58 417.2 30.5 277 105-411 2-280 (280)
5 PRK00108 mraY phospho-N-acetyl 100.0 2.3E-52 5E-57 420.2 35.2 316 72-416 7-342 (344)
6 COG0472 Rfe UDP-N-acetylmuramy 100.0 2.6E-53 5.5E-58 422.7 26.9 302 79-417 8-315 (319)
7 cd06855 GT_GPT_euk UDP-GlcNAc: 100.0 1E-52 2.2E-57 412.1 28.2 276 91-374 1-282 (283)
8 PRK14655 mraY phospho-N-acetyl 100.0 1.7E-51 3.8E-56 405.8 30.0 284 81-414 2-299 (304)
9 cd06854 GT_WbpL_WbcO_like The 100.0 8.1E-52 1.7E-56 400.7 22.0 250 109-396 3-253 (253)
10 PRK14654 mraY phospho-N-acetyl 100.0 1.6E-50 3.4E-55 399.5 28.5 286 82-416 4-299 (302)
11 TIGR00445 mraY phospho-N-acety 100.0 2.5E-50 5.4E-55 402.0 28.5 299 88-415 2-318 (321)
12 cd06852 GT_MraY Phospho-N-acet 100.0 9.3E-47 2E-51 370.2 25.9 267 114-413 5-279 (280)
13 cd06853 GT_WecA_like This subf 100.0 6.4E-47 1.4E-51 365.8 22.3 240 114-374 2-242 (249)
14 cd06851 GT_GPT_like This famil 100.0 8.7E-45 1.9E-49 345.2 25.1 220 105-345 2-222 (223)
15 cd06912 GT_MraY_like This subf 100.0 3.8E-40 8.3E-45 306.9 20.5 190 111-323 1-192 (193)
16 cd06499 GT_MraY-like Glycosylt 100.0 2.4E-38 5.2E-43 292.9 19.5 180 119-323 1-184 (185)
17 PF00953 Glycos_transf_4: Glyc 100.0 2.4E-33 5.2E-38 253.8 16.7 155 157-328 4-159 (159)
18 PF10555 MraY_sig1: Phospho-N- 83.8 0.2 4.4E-06 26.4 -0.8 11 118-128 2-12 (13)
19 PF11391 DUF2798: Protein of u 52.9 73 0.0016 23.8 6.7 45 56-100 13-58 (60)
20 COG5373 Predicted membrane pro 34.2 7.3E+02 0.016 28.6 13.1 65 60-133 150-214 (931)
21 PRK12876 ubiA prenyltransferas 33.9 1E+02 0.0022 31.0 6.1 20 103-122 69-88 (300)
22 PF02673 BacA: Bacitracin resi 27.9 2.6E+02 0.0057 27.4 7.8 64 40-103 178-245 (259)
23 COG3742 Uncharacterized protei 22.1 42 0.0009 29.4 0.9 27 291-317 78-107 (131)
24 COG1968 BacA Undecaprenyl pyro 21.5 4.4E+02 0.0096 26.1 8.0 63 41-103 184-249 (270)
25 PF06781 UPF0233: Uncharacteri 21.2 4.6E+02 0.01 21.4 7.7 26 37-62 28-53 (87)
26 PF05552 TM_helix: Conserved T 21.0 2.9E+02 0.0062 19.9 5.1 31 73-103 18-48 (53)
No 1
>KOG2788 consensus Glycosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-57 Score=439.34 Aligned_cols=343 Identities=56% Similarity=0.981 Sum_probs=309.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHhhcc-------
Q 014683 72 SILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNF------- 144 (420)
Q Consensus 72 ~~~~~~~~~~~afllt~~~~p~~~~~~~r~gl~~~di~k~~~r~h~~~~P~~GGiai~~~~li~~~l~~~~~~------- 144 (420)
+.......+..++..|..++|.+.....|.|+.|+|.+|++++ .+|+.-|.....+++++.+.+.++.+
T Consensus 5 ~l~~n~~~s~~~y~at~~~iPr~g~~Fi~~~l~g~dl~k~~~~----~~pe~~gai~a~V~l~v~~~fIP~pfm~~~~~~ 80 (418)
T KOG2788|consen 5 ALLINVGFSSAGYEATVMLIPRVGVSFIKAGLFGKDLNKDNRP----VIPETIGAISAAVYLIVMFIFIPFPFMFRGTPQ 80 (418)
T ss_pred hhhhhhhhhhhhhhhhhhccccccceeeeecccccccCcCCcc----cCchhhhhHHHHHHHHHHHhhcccccccCCCCc
Confidence 3455667778899999999999999999999999999999864 79999999998888888776654322
Q ss_pred ------c-----cchhhHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHH---hCCeEEEecCCccc
Q 014683 145 ------T-----ADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAY---AGHTSIIIPKPLVP 210 (420)
Q Consensus 145 ------~-----~~~~~~~~~~~~l~~~~~~~liG~lDD~~~l~~~~Kl~lq~~aa~~~~~~~---~g~~~i~ip~~~~p 210 (420)
+ -++.-+.++++.+++++.+.++|+.||++|++||.|+.++.+|++++++.| .|+|.+.+|+++.+
T Consensus 81 ~d~~v~e~~~~~Fphd~l~~l~sallsi~~~ilLGfaDD~ldlrWRhKl~lPt~AtlPLLmVYyv~~g~TtV~iP~~~r~ 160 (418)
T KOG2788|consen 81 GDVSVVESFQFNFPHDKLVELLSALLSICSMILLGFADDVLDLRWRHKLLLPTIATLPLLMVYYVSFGVTTVVIPKPLRN 160 (418)
T ss_pred ccccccccccccCChHHHHHHHHHHHHHhHHHHhcccchhccchhhhheeccchhhCceEEEEEEcCCceEEEecHHHHh
Confidence 0 122236788889999999999999999999999999999999999987766 78899999999999
Q ss_pred ccccceechhHHHHHHHHHHHHHHHhHhhhhcCchhhhHHHHHHHHHHHHHHHHHHhccCCCch-hhhhhHHHHHHHHHH
Q 014683 211 YVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPE-YKQAHAFSIYLVQPL 289 (420)
Q Consensus 211 ~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~~~~~~~~-~~~~~~~~~~l~l~l 289 (420)
+.|...+++|.+|++++....++|+|++|+.+|+||++.||+++++....+.+..+..+..+++ ..+.|.+|.++.+++
T Consensus 161 ~l~~~~~nlg~lYy~yM~~lavFCtNsINIlAGiNGlEvGQslvia~~i~l~~l~~~~~~~~~~~~~~~h~fSlyl~~p~ 240 (418)
T KOG2788|consen 161 ILGLTSLNLGFLYYVYMGLLAVFCTNSINILAGINGLEVGQSLVIAASILLNNLVYLWRSVDPEATRFAHAFSLYLTIPL 240 (418)
T ss_pred hhccceecccchHHhhhceeeeeccCchhhhcccchheeccchhhhHHHHhhhHHHHhcccCccccchhhhHHHHHHhHH
Confidence 9997788999999999999999999999999999999999999999999888887765544554 334788999999999
Q ss_pred HHHHHHHhhccccCCccccCchhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCC
Q 014683 290 LATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQT 369 (420)
Q Consensus 290 ~gallgFL~fN~~PAkIFmGDtGSl~lG~~la~i~i~~~~~~~~~~~~~P~~~~~~l~vp~l~~i~~R~~~~~~~f~~d~ 369 (420)
.+..+|.+.|||||+|+|+|||.+|+.|+++|+++|+||+++++.++++||++||++++||++.+++|+|||.|+++|.+
T Consensus 241 ~~~sl~ll~~n~yPsrVFVGDTfcyfaGMt~AVVgILGHFSKTllLFFiPQI~NFlyS~PQLfhlVpCPRHRLPKyd~kT 320 (418)
T KOG2788|consen 241 LATSLALLKYNWYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTLLLFFIPQILNFLYSLPQLFHLVPCPRHRLPKYDPKT 320 (418)
T ss_pred HHHHHHHHHhccCCceEEeccceeeeccchhhhhHHhhhhHHHHHHHHHHHHHHHHHhhHHHcCcccCccccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCC----------------------------------------CchhHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Q 014683 370 GLLTGTN----------------------------------------DGTLVNFFLRLFGKMSEGSLCAALLVFQAIACC 409 (420)
Q Consensus 370 ~Hl~~~~----------------------------------------~~~l~nl~L~~~G~~se~~vv~~l~~i~~~~~~ 409 (420)
+.++.+. |.|++|+.|+.+||++|++++..++.+|+++|+
T Consensus 321 gll~~S~~efk~~dl~~~g~l~i~v~~~l~li~v~~~e~~g~~l~~nN~TlINlvL~~~GP~hEk~L~~~lm~lQil~~~ 400 (418)
T KOG2788|consen 321 GLLSMSYAEFKLTDLKRPGALFITVCKSLGLIHVKEVEKDGIYLQINNLTLINLVLKFFGPLHEKTLCIVLMSLQILCSL 400 (418)
T ss_pred CceeeehhhhcccccccccchhhHHHhhccceeEEeecCCceEEEecCeeEEEeehhhhCccchhHHHHHHHHHHHHHHH
Confidence 9888765 789999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 014683 410 LCFVLRELL 418 (420)
Q Consensus 410 ~~l~l~~~~ 418 (420)
+++.+||++
T Consensus 401 laf~iR~~l 409 (418)
T KOG2788|consen 401 LAFFIRHYL 409 (418)
T ss_pred HHHHHHHHH
Confidence 999999986
No 2
>TIGR02380 ECA_wecA undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. Members of this family are the WecA enzyme of enterobacterial common antigen biosynthesis, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase. This family represents one narrow clade, and closely related sequences outside this clade may represent enzymes that catalyze the same specific reaction, but in the context of different pathways. A His-rich motif in a cytosolic loop of this integral membrane protein, shown critical to enzymatic activity for WecA (see ref ) is variously present or absent in the clade that includes Bacillus subtilis TagO teichoic acid biosynthesis enzyme, which may catalyze the same reaction as WecA.
Probab=100.00 E-value=1.6e-54 Score=435.72 Aligned_cols=297 Identities=16% Similarity=0.185 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCC-CcccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Q 014683 80 SLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (420)
Q Consensus 80 ~~~afllt~~~~p~~~~~~~r~gl~~~di~k~~~r~-h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l 158 (420)
.+.++++|++++|.++++++|.|++ |+||+|| |+++|||+||++++.+++++...+.. .... ....+
T Consensus 4 ~~~~~~~s~~~~~~~~~~a~r~~lv----D~P~~Rk~H~~~~P~~GGiai~~~~~~~~~~~~~---~~~~-----~~~~l 71 (346)
T TIGR02380 4 LIVIFLSSFAFLFLMRKVAKIVGLV----DKPNARKRHQGFIPLVGGISIFLTLCIYLFLHPA---LIPH-----YSLYL 71 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC----cCCCCCCCCCCCcCCcCcHHHHHHHHHHHHHHhc---chhH-----HHHHH
Confidence 3467888999999999999999997 4788777 99999999999999988766543211 1111 11234
Q ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccccceechhHHHHHHHHHHHHHHHhHh
Q 014683 159 ASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSI 238 (420)
Q Consensus 159 ~~~~~~~liG~lDD~~~l~~~~Kl~lq~~aa~~~~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~Nav 238 (420)
.+...+.++|++||++++|++.|+..|++++.+++. +.| . .+.....+ ++...++++|++++++++++++.+||+
T Consensus 72 ~~~~li~~iG~~DD~~~Ls~~~rl~~q~~aa~~~~~-~~~-~--~i~~~~~~-~~~~~l~l~~~~~~~t~~~iv~~~Na~ 146 (346)
T TIGR02380 72 FCATILVVIGIIDDRFDISVKIRLAIQAAVSIVMIQ-FGN-I--YLHSLGNI-FGPKELTLGLFGYIITIFAVIGAINAF 146 (346)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH-Hcc-c--chhhcccc-cccccccchHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999999999999987642 222 1 12111112 232246678999999999999999999
Q ss_pred hhhcCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHhhcccc-----CCccccCchhh
Q 014683 239 NIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWY-----PSSVFVGDTYT 313 (420)
Q Consensus 239 Nl~DGlDGLa~G~sli~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~-----PAkIFmGDtGS 313 (420)
|++||+||||+|++++++.++++.++... +.....++++++|+++|||+|||| ||||||||+||
T Consensus 147 N~iDGiDGLa~g~~~i~~~~l~~~~~~~~-----------~~~~~~~~~~l~ga~lgFL~~N~~~~~~~pAkIFMGD~GS 215 (346)
T TIGR02380 147 NMIDGIDGLLGGLSCVSFAALGYLFWLDG-----------QVELAYWCFALIVAILPYLMLNLGIPLGRKFKVFMGDAGS 215 (346)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeEeccchhh
Confidence 99999999999999999998877654321 111234667899999999999996 89999999999
Q ss_pred HHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhCCC
Q 014683 314 YFAGMTMAVVGILGHFSE--TLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKM 391 (420)
Q Consensus 314 l~lG~~la~i~i~~~~~~--~~~~~~~P~~~~~~l~vp~l~~i~~R~~~~~~~f~~d~~Hl~~~~~~~l~nl~L~~~G~~ 391 (420)
+++|+.+|+.++...++. .......|..+-.....|++.+++||.++||++|+|||+|+||. +++.| +
T Consensus 216 ~~LGf~la~~~i~~~~~~~~~~~~~~~~l~~l~~Pl~D~~~~i~rR~~~g~~~f~adr~Hlhh~---------L~~~G-~ 285 (346)
T TIGR02380 216 TFIGFTVIWLLLLATQGESSPSMRPVTALWLIALPLMDMAAIMLRRIRKGDSPFKPDRQHLHHI---------LQRLG-L 285 (346)
T ss_pred HHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCccHHHH---------HHHcC-C
Confidence 999999999998875432 11111223333223345588899999999999999999999993 66789 9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 014683 392 SEGSLCAALLVFQAIACCLCFVL 414 (420)
Q Consensus 392 se~~vv~~l~~i~~~~~~~~l~l 414 (420)
||+|++..++.++++++++|+..
T Consensus 286 s~~~~~~~~~~~~~~~~~~~~~~ 308 (346)
T TIGR02380 286 TSRQSLFVICGFAALFAAIGIWS 308 (346)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 3
>PRK15119 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase; Provisional
Probab=100.00 E-value=5.4e-54 Score=434.41 Aligned_cols=296 Identities=15% Similarity=0.150 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCC-CcccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHH
Q 014683 81 LAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALA 159 (420)
Q Consensus 81 ~~afllt~~~~p~~~~~~~r~gl~~~di~k~~~r~-h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~ 159 (420)
+.++++|++++|.++++++|.|++| +|++|| |+++|||+||++++.+++++..+.... ... ....+.
T Consensus 11 ~~~~~~s~~l~~~~~~~a~r~gl~D----~P~~Rk~H~~~~P~~GGiai~~~~~~~~~~~~~~---~~~-----~~~~l~ 78 (365)
T PRK15119 11 ISIFLFSTLFLFFARKVAKKIGLVD----KPNYRKRHQGLIPLVGGISVYAGICFTFGITDYY---IPH-----ASLYLA 78 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCcCCCCCCCCcCcHHHHHHHHHHHHHHHhc---chh-----HHHHHH
Confidence 4577888899999999999999974 677766 999999999999999887766543111 111 112344
Q ss_pred HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccccceechhHHHHHHHHHHHHHHHhHhh
Q 014683 160 SICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSIN 239 (420)
Q Consensus 160 ~~~~~~liG~lDD~~~l~~~~Kl~lq~~aa~~~~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavN 239 (420)
+...+.++|++||+++++++.|++.|++++..+.. +.|. .++....| ++...++++|++++++++++++++||+|
T Consensus 79 ~~~ll~~iG~~DD~~~l~~~~RL~~Q~~aa~~l~~-~~g~---~i~~~~~~-~~~~~i~~~~~~~~~tv~~iv~~iNA~N 153 (365)
T PRK15119 79 CAGVLVFVGALDDRFDISVKIRATIQAAVGIVMMV-FAGL---YLSSLGYI-FGPWEMVLGPFGYFLTLFAVWAAINAFN 153 (365)
T ss_pred HHHHHHHHHhHhcccCCCHHHHHHHHHHHHHHHHH-HhCc---chhccccc-cccccccchHHHHHHHHHHHHHHHhHHH
Confidence 55567789999999999999999999999976542 3331 22211112 2221345678899999999999999999
Q ss_pred hhcCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHhhccc----cCCccccCchhhHH
Q 014683 240 IHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNW----YPSSVFVGDTYTYF 315 (420)
Q Consensus 240 l~DGlDGLa~G~sli~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~----~PAkIFmGDtGSl~ 315 (420)
++||+||||+|++++++.++++.++... +.....++++++|+++|||+||| ||||+||||+||++
T Consensus 154 ~iDGiDGLa~g~~~i~~~~l~~~~~~~~-----------~~~~~~~~~~l~ga~lgFL~fN~~~~~~pAkIFMGD~GS~~ 222 (365)
T PRK15119 154 MVDGIDGLLGGLSCVSFAAMGIILWFDG-----------QTSLALWCFAMIAAILPYILLNLGILGRRYKVFMGDAGSTL 222 (365)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHHHHHHcCCCCCCCeEeccchhHHH
Confidence 9999999999999999999887765321 11123567788999999999999 57999999999999
Q ss_pred HHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhCCCChH
Q 014683 316 AGMTMAVVGILGHFSE-TLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKMSEG 394 (420)
Q Consensus 316 lG~~la~i~i~~~~~~-~~~~~~~P~~~~~~l~vp~l~~i~~R~~~~~~~f~~d~~Hl~~~~~~~l~nl~L~~~G~~se~ 394 (420)
+|+.+|+.++...++. .......|..+-+....|++.+++||.++||++|+|||+|+||. +.+.| +||+
T Consensus 223 LGf~la~~~i~~~~~~~~~~~~~~~l~~l~~Pl~D~~~~~~rR~~~g~~~f~adr~Hlhh~---------L~~~G-~s~~ 292 (365)
T PRK15119 223 IGFTVIWILLETTQGKTHPISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPDRQHIHHL---------IMRAG-FTSR 292 (365)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHH---------HHHcC-CCHH
Confidence 9999999998874432 21122233333333445688999999999999999999999993 56689 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014683 395 SLCAALLVFQAIACCLCFVL 414 (420)
Q Consensus 395 ~vv~~l~~i~~~~~~~~l~l 414 (420)
|++..++.++++++++|+..
T Consensus 293 ~~~~~i~~~~~~~~~~~~~~ 312 (365)
T PRK15119 293 QAFVLITLAAALLASIGVLG 312 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 4
>cd06856 GT_GPT_archaea UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT)-like proteins in archaea. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaea gene, indicating that eukaryotic and archaeal enzymes may use the same substrates and are evolutionarily closer than the bacterial enzyme, which uses a different substrate.
Probab=100.00 E-value=1.8e-53 Score=417.22 Aligned_cols=277 Identities=29% Similarity=0.376 Sum_probs=227.9
Q ss_pred CcccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 014683 105 GYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLIL 184 (420)
Q Consensus 105 ~~di~k~~~r~h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~lDD~~~l~~~~Kl~l 184 (420)
|+|+||+++ ++|||+||++++.+++++..++..... ..+....+.+.+.++++|++||+.++|+|.|+++
T Consensus 2 g~d~hk~~~----~~vP~~GGi~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~lG~~DD~~~l~~~~Kl~~ 71 (280)
T cd06856 2 GRDVHKPGK----PEVPEMGGIAVLLGFSLGLLFLSALTH------SVEALALLITSLLAGLIGLLDDILGLSQSEKVLL 71 (280)
T ss_pred CccccccCC----CCCCCcchHHHHHHHHHHHHHHHHccc------hHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHH
Confidence 678888754 489999999999999888765432211 1223345667788899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEecCCcccccccceechhHHHHHHHHHHHHHHHhHhhhhcCchhhhHHHHHHHHHHHHHHHH
Q 014683 185 PSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNI 264 (420)
Q Consensus 185 q~~aa~~~~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~sli~~~~l~i~~~ 264 (420)
|+++++++...+.+.+.+.+| +.+ ....++++++++.+++++++||+|++||+|||++|++++++.++++++.
T Consensus 72 ~~~aa~~l~~~~~~~~~~~~p-----~~~--~~~~~~~~~~~~~l~iv~~~Na~N~~DGinGL~~g~~~i~~~~l~~~~~ 144 (280)
T cd06856 72 TALPAIPLLVLKAGNPLTSLP-----IGG--RVLGILYYLLIVPLGITGASNAFNMLAGFNGLEAGMGIIILLALAIILL 144 (280)
T ss_pred HHHHHHHHHHHHHhcceeecC-----ccc--hhhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 999998876545444444443 111 1222467778899999999999999999999999999999999988775
Q ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 014683 265 MQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNF 344 (420)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGSl~lG~~la~i~i~~~~~~~~~~~~~P~~~~~ 344 (420)
.+. +..+..++++++|+++|||+|||||||+||||+||+++|+++|++++.++++.....++.|+++|+
T Consensus 145 ~~~-----------~~~~~~l~~~l~~a~lgFL~~N~~PAkiF~GD~GS~~lG~~la~~~i~~~~~~~~~il~~P~~id~ 213 (280)
T cd06856 145 ING-----------DYDALIIALILVAALLAFLLYNKYPAKVFPGDVGTLPIGALIGTIAVLGGLEIILLILLLPYVIDF 213 (280)
T ss_pred HcC-----------CHHHHHHHHHHHHHHHHHHHhhcCccceeccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 431 222446678899999999999999999999999999999999999999999888888999999999
Q ss_pred HhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHH--HHHHhCCCChHHHHHHHHHHHHHHHHHH
Q 014683 345 LLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNF--FLRLFGKMSEGSLCAALLVFQAIACCLC 411 (420)
Q Consensus 345 ~l~vp~l~~i~~R~~~~~~~f~~d~~Hl~~~~~~~l~nl--~L~~~G~~se~~vv~~l~~i~~~~~~~~ 411 (420)
.+.++|.+...+|+ ||+++.+ +++++++.++.+.+|. +++..||++|||+|..+|.+|+++|+++
T Consensus 214 ~l~l~~~~~~~~~~-~~~~~~~-~~g~l~~~~~~~~~~~~~~l~~~g~~~E~~l~~~l~~i~~~~~~~~ 280 (280)
T cd06856 214 LLKLRSKGGGKEHR-EKPTKVL-EDGTLYPPPDKSSLLTLRLLLRKGPMTEKEVVLVLWALEALLGILA 280 (280)
T ss_pred HHHHHHhcCcccCC-CCCCeEC-CCCcEecCCCcCchhHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887 8888877 8899998877666663 6777899999999999999999999863
No 5
>PRK00108 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=2.3e-52 Score=420.20 Aligned_cols=316 Identities=23% Similarity=0.298 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCC--CCcccCCCCchHHHHHHHHHHHHHHHhhccccchh
Q 014683 72 SILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTP--QGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSN 149 (420)
Q Consensus 72 ~~~~~~~~~~~afllt~~~~p~~~~~~~r~gl~~~di~k~~~r--~h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~ 149 (420)
........++++|++|++++|.++++++|+|+ |+|.++++++ +|+++|||+||++++++++++..++. ...+.+
T Consensus 7 ~~~~~~~~~~~af~is~~~~p~~i~~~~~~~~-~~~~~~~~p~~h~h~~~tP~~GGi~i~~~~~~~~~~~~--~~~~~~- 82 (344)
T PRK00108 7 LTFRALLALLTALLISLILGPRFIRFLRKLKF-GQPIREDGPQSHLKKAGTPTMGGILILLAIVISTLLWA--DLSNPY- 82 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCccccccccccCCCCCCCcccHHHHHHHHHHHHHHH--hccchH-
Confidence 34566777788999999999999999999995 7665554333 46899999999999998887765432 111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc--------CCCchhhHHHHHHHHHHHHHHH-H-hC--CeEEEecCCccccccccee
Q 014683 150 WLVEYNAALASICFMLLLGFVDDV--------LDVPWRVKLILPSFAALPLLMA-Y-AG--HTSIIIPKPLVPYVGLEIL 217 (420)
Q Consensus 150 ~~~~~~~~l~~~~~~~liG~lDD~--------~~l~~~~Kl~lq~~aa~~~~~~-~-~g--~~~i~ip~~~~p~~g~~~~ 217 (420)
....+.+...++++|++||+ ++++++.|+++|++++..+... + .| .+.+.+ |+.|...+
T Consensus 83 ----~~~~l~~~~~~~~vG~~DD~~~~~~~~~~~l~~~~kl~~q~~aa~~~~~~~~~~g~~~~~~~~-----p~~~~~~i 153 (344)
T PRK00108 83 ----VWLVLLVTLGFGLIGFLDDYLKVVKKNNLGLSARQKLLLQILIALIFALLLYLLGSTSTSLTI-----PFFKDLSL 153 (344)
T ss_pred ----HHHHHHHHHHHHHHHhHHhhHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCceEEe-----cCcccccc
Confidence 22344555667899999999 5899999999999999876432 1 12 223333 34442235
Q ss_pred chh-HHHHHHHHHHHHHHHhHhhhhcCchhhhHHHHHHHHHHHHHHHHHHhcc---C--CCchhhhhhHHHHHHHHHHHH
Q 014683 218 DLG-WIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGA---S--LDPEYKQAHAFSIYLVQPLLA 291 (420)
Q Consensus 218 ~lg-~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~~~---~--~~~~~~~~~~~~~~l~l~l~g 291 (420)
+++ |++++++++++++++||+|++||+|||++|++++++.++++.++..... + ..|+..+.. ....++++++|
T Consensus 154 ~lg~~~~~~~t~~~iv~~~Na~N~iDGiDGLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g 232 (344)
T PRK00108 154 DLGVILYIPFAYFVIVGTSNAVNLTDGLDGLAIGPSVIVFAALGIIAYLQGNAVFANYLHIPYIPGAG-ELAIFCAALVG 232 (344)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhccCchhHHHHHHHHHHHHHHHHHHHcCchhhhhhhcccccCCch-HHHHHHHHHHH
Confidence 667 7889999999999999999999999999999999999988776542100 0 000000011 13456788999
Q ss_pred HHHHHhhccccCCccccCchhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCc
Q 014683 292 TSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGL 371 (420)
Q Consensus 292 allgFL~fN~~PAkIFmGDtGSl~lG~~la~i~i~~~~~~~~~~~~~P~~~~~~l~vp~l~~i~~R~~~~~~~f~~d~~H 371 (420)
+++|||+||||||||||||+||+++|+.+|++++..+++........+.++|....+ +.++.+|. +||++|++ +|
T Consensus 233 allGFL~~N~~pAkIFMGD~GS~~LG~~la~~~i~~~~~~~~~~~~~~~l~d~~~~~--l~~~~~R~-~g~~~f~~--~h 307 (344)
T PRK00108 233 ACLGFLWFNAYPAQVFMGDTGSLALGGALAAIAVLLRQELLLLIIGGVFVIETLSVI--LQVGSFKL-TGKRIFRM--AP 307 (344)
T ss_pred HHHHHHHhcCCcceEEeechHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--HHHHHHHh-cCCCCCCC--CC
Confidence 999999999999999999999999999999999987665444444444455543321 12233465 79999987 68
Q ss_pred cccCCCchhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 014683 372 LTGTNDGTLVNFFLRLFGKMSEGSLCAALLVFQAIACCLCFVLRE 416 (420)
Q Consensus 372 l~~~~~~~l~nl~L~~~G~~se~~vv~~l~~i~~~~~~~~l~l~~ 416 (420)
+|| + +++.| |||+|++..++.++.+++++++...+
T Consensus 308 lHH---~------l~~~G-~s~~~vv~~~~~i~~~~~~~~~~~~~ 342 (344)
T PRK00108 308 IHH---H------FELKG-WSETKVVVRFWIITLILALIGLATLK 342 (344)
T ss_pred HHH---H------HHHcC-CChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887 3 66789 99999999999999999999987544
No 6
>COG0472 Rfe UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.6e-53 Score=422.74 Aligned_cols=302 Identities=21% Similarity=0.305 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Q 014683 79 LSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (420)
Q Consensus 79 ~~~~afllt~~~~p~~~~~~~r~gl~~~di~k~~~r~h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l 158 (420)
..++++++|+.++|.++++++|.+..| ++++++|+|+++|||+||++++.+++++..++... ..+.+. ...+
T Consensus 8 ~~i~a~~~s~~~~p~~~~~~~~~~~~~--~~~~~~k~H~~~tP~mGGl~I~~~~~~~~~l~~~~-~~~~~~-----~~~l 79 (319)
T COG0472 8 ALIISFVISLILTPILIKFLRKLGLGD--IPEDGPKSHKKGTPTMGGLAILLSILLASLLAANL-LTNPYV-----WLVL 79 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc--CCCccccccCCCCCCcchHHHHHHHHHHHHHHHHh-ccchHH-----HHHH
Confidence 667899999999999999999999864 44556666999999999999999999887665432 122221 2356
Q ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhC--CeEEEecCCcccccccceechh-HHHHHHHHHHHHHHH
Q 014683 159 ASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAG--HTSIIIPKPLVPYVGLEILDLG-WIYKLYMFLLAVFCT 235 (420)
Q Consensus 159 ~~~~~~~liG~lDD~~~l~~~~Kl~lq~~aa~~~~~~~~g--~~~i~ip~~~~p~~g~~~~~lg-~l~~~l~~l~iv~~~ 235 (420)
.+...++.+|++||..+++++.|.+.|..++.+++..+.. ......| ...|+. .+.+ +++++++.+++++++
T Consensus 80 ~~~~~~~~iG~lDD~~~l~~~~r~l~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ivg~s 154 (319)
T COG0472 80 LGLLGFGLIGFLDDRLKLSPKIRGLIQKLKALLLIIALGELPIKFLDIP-LGIPFF----KLPGPLLFILFAVFAIVGAS 154 (319)
T ss_pred HHHHHHHHHHHHHhHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHhccCc-ccccHH----HHHHHHHHHHHHHHHHHHHH
Confidence 6677788999999999999999999999888742222211 0111111 011222 2234 789999999999999
Q ss_pred hHhhhhcCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhhHH
Q 014683 236 NSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYF 315 (420)
Q Consensus 236 NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGSl~ 315 (420)
||+|++||+||||+|++.+++.++++.++... +......+.+++|+++|||+||+|||||||||+||++
T Consensus 155 NAvNl~DGlDGLa~g~~~i~~~~~~~i~~~~~-----------~~~~~~~~~al~ga~LGFL~~N~~PAkIFmGDtGSl~ 223 (319)
T COG0472 155 NAVNLTDGLDGLAAGLSAIALLALALIALLQG-----------LGELALICAALAGACLGFLWFNFYPAKIFMGDTGSLA 223 (319)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHHHHHHhcCChhhhcCCchhhHH
Confidence 99999999999999999999999998877542 2224567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCC-CCCCCCCCCccccCCCchhHHHHHHHhCC--CC
Q 014683 316 AGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHR-LPGFNPQTGLLTGTNDGTLVNFFLRLFGK--MS 392 (420)
Q Consensus 316 lG~~la~i~i~~~~~~~~~~~~~P~~~~~~l~vp~l~~i~~R~~~~-~~~f~~d~~Hl~~~~~~~l~nl~L~~~G~--~s 392 (420)
+|+.+|+++++++++.. .....| ++...++++.+++||.++| +++..||+.|+|| | +++.|. |+
T Consensus 224 LG~~la~iail~~~~~~-l~~~~~---~~v~v~et~~vil~r~~~~~~~~~~~~~~~~HH---~------~~~~g~~~~~ 290 (319)
T COG0472 224 LGAALAAIALLLKQEIL-LAIIGP---LGVPVIETLSVILRRLSFKLKPIRLPDMAHLHH---H------LELKGLSEWS 290 (319)
T ss_pred HHHHHHHHHHHHhCchh-hhhhhh---hhHHHHHHHHHHHHHHHhccCCCCCcCCCCchH---H------HHHcCCccCc
Confidence 99999999999999887 444555 2344556778888998666 6777789999998 3 676674 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 014683 393 EGSLCAALLVFQAIACCLCFVLREL 417 (420)
Q Consensus 393 e~~vv~~l~~i~~~~~~~~l~l~~~ 417 (420)
|+|++.++|.++++++.+++.....
T Consensus 291 e~~vv~~~w~i~~i~~~i~l~~~~~ 315 (319)
T COG0472 291 ERQVVLRFWLISLILALIALLLLKS 315 (319)
T ss_pred cceehHHHHHHHHHHHHHHHHHHcc
Confidence 8999999999999999999877543
No 7
>cd06855 GT_GPT_euk UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. A series of six conserved motifs designated A through F, ranging in length from 5 to 13 amino acid residues, has been identified in this family. They have been determined to be important for stable expression, substrate binding, or catalytic activities.
Probab=100.00 E-value=1e-52 Score=412.15 Aligned_cols=276 Identities=61% Similarity=1.064 Sum_probs=213.3
Q ss_pred HHHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHhhcccc--chhhHHHHHHHHHHHHHHHHHH
Q 014683 91 IPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFTA--DSNWLVEYNAALASICFMLLLG 168 (420)
Q Consensus 91 ~p~~~~~~~r~gl~~~di~k~~~r~h~~~~P~~GGiai~~~~li~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~liG 168 (420)
+|.++++++|+|++|+|.||+ |+++|||+||++++++++++..+........ ......++...+.+...++++|
T Consensus 1 ~p~~i~~~~~~~l~~~d~~k~----~~~~vP~~GGlai~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG 76 (283)
T cd06855 1 IPKFGPLFIKAGLYGIDLNKN----GEEKIPESAGLVPGIVFLIVLFLFIPFPFLKDFPHDKLVEYLSALLSICCMTFLG 76 (283)
T ss_pred ChhHHHHHHHCCCcccCCCCC----CCCCCCCcCcHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 388999999999998877665 4579999999999999988775532221000 0000122334566677789999
Q ss_pred HhhccCCCchhhHHHHHHHHHHHHHHHHhCCe---EEEecCCcccccccceechhHHHHHHHHHHHHHHHhHhhhhcCch
Q 014683 169 FVDDVLDVPWRVKLILPSFAALPLLMAYAGHT---SIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLN 245 (420)
Q Consensus 169 ~lDD~~~l~~~~Kl~lq~~aa~~~~~~~~g~~---~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlD 245 (420)
++||+.+++++.|+++|++++.++.+.+.+.. ...+| +.|+.+ ..++++|++++++++++++++||+|++||+|
T Consensus 77 ~lDD~~~l~~~~Kl~~q~~aa~~~~~~~~~~~~~~~~~~p--~~~~~~-~~i~l~~l~~~lt~~~iv~~~Na~N~~DGlD 153 (283)
T cd06855 77 FADDVLDLRWRHKLILPTFASLPLLMVYYGNTGITLPIVP--LRPLLG-TLIDLGILYYVYMILLAVFCTNSINIYAGIN 153 (283)
T ss_pred HhhchhccCchHHHHHHHHHHHHHHHHHhcccccceeecc--hhhccc-ccccccHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999987543333321 11122 011222 1356789999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCC-CchhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhhHHHHHHHHHHH
Q 014683 246 GLEVGQTVVIASAILLHNIMQIGASL-DPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVG 324 (420)
Q Consensus 246 GLa~G~sli~~~~l~i~~~~~~~~~~-~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGSl~lG~~la~i~ 324 (420)
|||+|++++++.++++.++....++. .+.. +++.....++++++|+++|||+||||||||||||+||+++|+.+|+++
T Consensus 154 GLa~g~~~i~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ga~lGFL~~N~~PAkIFMGD~GSl~LG~~la~~~ 232 (283)
T cd06855 154 GLEVGQSLVIALSILLYNLLELNGSSGSMTL-DAHLFSLYLLLPFIAVSLALLYYNWYPSKVFVGDTFTYFAGMVFAVVG 232 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccccc-cccHHHHHHHHHHHHHHHHHHhcCCCccceeeechHHHHHHHHHHHHH
Confidence 99999999999998877654210000 0000 012234467888999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCcccc
Q 014683 325 ILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTG 374 (420)
Q Consensus 325 i~~~~~~~~~~~~~P~~~~~~l~vp~l~~i~~R~~~~~~~f~~d~~Hl~~ 374 (420)
+.++++........|+++|+++.+|+..+++||.|||+++|++||+|+.+
T Consensus 233 i~~~~~~~~~~~~~p~~~~~~l~~P~~~~~~~r~~~~~~~~~~d~~hl~~ 282 (283)
T cd06855 233 ILGHFSKTLLLFFIPQIINFLYSLPQLFGIVPCPRHRLPKFNPKTGLLEP 282 (283)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhHhheeeeccccCCCCCCCCcCCCCC
Confidence 99988887778889999999999999999999999999999999999876
No 8
>PRK14655 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=1.7e-51 Score=405.83 Aligned_cols=284 Identities=21% Similarity=0.206 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccCcccCCCCC--CCCcccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHH
Q 014683 81 LAGFFITQKMIPVASRYVLRRNLFGYDINKKGT--PQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAAL 158 (420)
Q Consensus 81 ~~afllt~~~~p~~~~~~~r~gl~~~di~k~~~--r~h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l 158 (420)
+.++++|.+++|.++++++|+|+ +||++++++ ++||++||++||++++.+++++..++..+...+.. +....+
T Consensus 2 ~~s~~ls~~~~p~~i~~l~~~~~-~q~ir~dgP~~~~~k~~tPtmGGi~ii~~~li~~~~~~~~~~~~~~----~~~~~l 76 (304)
T PRK14655 2 VVAALLSWFLVGLFIRYSKARGW-GQPVRQDGPQTHLAKEGTPTAGGVAFVLALALVFFPLYAFGHAGGE----RELLIM 76 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCcccccCcccccCCCCCCCcChHHHHHHHHHHHHHHHHhhhccch----HHHHHH
Confidence 35788899999999999999996 777766653 33899999999999999988776543222211111 111244
Q ss_pred HHHHHHHHHHHhhccCC------------CchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccccceechhHHHHHH
Q 014683 159 ASICFMLLLGFVDDVLD------------VPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLY 226 (420)
Q Consensus 159 ~~~~~~~liG~lDD~~~------------l~~~~Kl~lq~~aa~~~~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l 226 (420)
.+...++++|++||+.+ ++++.|+.+|++++..+....... -+....|+ ..+|+++++
T Consensus 77 ~~~~~~~~iG~~DD~~kl~~~~~~~~~~gL~~~~Kl~~Q~l~a~~~~~~~~~~----~~~~~~~~------~~~~~~~~~ 146 (304)
T PRK14655 77 LAALAMGVVGGIDDFLKIRSRMRGHGKKELLAREKFPLQFLVALVFAGFAAPL----ASHELLPS------LGPVFDVLL 146 (304)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccCCCCHHHHHHHHHHHHHHHHHHHhcc----cccccccc------hhhHHHHHH
Confidence 56667889999999874 456789999999887653211100 00011121 136889999
Q ss_pred HHHHHHHHHhHhhhhcCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHhhccccCCcc
Q 014683 227 MFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSV 306 (420)
Q Consensus 227 ~~l~iv~~~NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkI 306 (420)
+++++++++||+|++||+||||+|++++++.+++..+ .++.+++|+++|||+||+|||||
T Consensus 147 ~~~~iv~~~NAvNl~DGLDGLa~g~~~i~~~~l~~~~--------------------~~~~~l~Ga~lGFL~fN~~PAkI 206 (304)
T PRK14655 147 IALVMVGSVNAFNFTDGLDGLLAGVAMIVLLPLLAVS--------------------PVSALLVAVLLGFLWFNAHPARV 206 (304)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhcCcccE
Confidence 9999999999999999999999999999888765321 24567899999999999999999
Q ss_pred ccCchhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHH
Q 014683 307 FVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLR 386 (420)
Q Consensus 307 FmGDtGSl~lG~~la~i~i~~~~~~~~~~~~~P~~~~~~l~vp~l~~i~~R~~~~~~~f~~d~~Hl~~~~~~~l~nl~L~ 386 (420)
||||+||+++|+++|.+++..+++.........+++|.+..+-|...+..+ +||..+ +.|+||| +|
T Consensus 207 FMGDtGSl~LG~~la~~ai~~~~~~~l~i~g~ifv~e~lSviiQv~~fk~~-gkrif~-------maPiHhH------fe 272 (304)
T PRK14655 207 FMGDMGSHAIGAVAAGAYILYADVWLLPIAAIIPVVAVLSVVIQVASFRLR-GKRVFR-------MSPIQHH------FE 272 (304)
T ss_pred EeeccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhheeEEEEEEEEc-Ceeecc-------CCchHHH------HH
Confidence 999999999999999999999999888888788889988888897777643 334333 6667778 89
Q ss_pred HhCCCChHHHHHHHHHHHHHHHHHHHHH
Q 014683 387 LFGKMSEGSLCAALLVFQAIACCLCFVL 414 (420)
Q Consensus 387 ~~G~~se~~vv~~l~~i~~~~~~~~l~l 414 (420)
+.| |||.|++.++|.++.+++++++++
T Consensus 273 ~~G-w~e~~iv~~fwii~~~~~~~~~~~ 299 (304)
T PRK14655 273 LSG-WPETHVTLRFWVVTAIATAAVWWL 299 (304)
T ss_pred hcC-CCcceehhhHHHHHHHHHHHHHHH
Confidence 889 999999999999999999999876
No 9
>cd06854 GT_WbpL_WbcO_like The members of this subfamily catalyze the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate (Und-P) molecule and N-acetylhexosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylhexosamine precursor. The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The subgroup of bacterial UDP-HexNAc:polyprenol-P HexNAc-1-P transferases includes the WbcO protein from Yersinia enterocolitica and the WbpL protein from Pseudomonas aeruginosa. These transferases initiate LPS O-antigen biosynthesis. Similar to other GlcNAc/MurNAc-1-P transferase family members, WbpL is a highly hydrophobic protein possessing 11 predicted transmembrane segments.
Probab=100.00 E-value=8.1e-52 Score=400.72 Aligned_cols=250 Identities=22% Similarity=0.294 Sum_probs=190.8
Q ss_pred CCCCCCC-CcccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 014683 109 NKKGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPSF 187 (420)
Q Consensus 109 ~k~~~r~-h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~lDD~~~l~~~~Kl~lq~~ 187 (420)
|||++|| |+++|||+||++++.+++++..++........ .+....+.+...++++|++||+++++++.|+.+|++
T Consensus 3 D~P~~Rk~H~~~~P~~GGi~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~iG~~DD~~~l~~~~kl~~q~~ 78 (253)
T cd06854 3 DIPNERSSHTKPTPRGGGIAFVLAFLLALLLAAAAGPLND----LSYLLLLIGLLLLAAVGFIDDLRSLSPKIRLLVQLL 78 (253)
T ss_pred CCCCCCCCCCCCcCCcChHHHHHHHHHHHHHHHHccccch----hHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 6888887 99999999999999988877654432210111 112234556677889999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEEecCCcccccccceechhHHHHHHHHHHHHHHHhHhhhhcCchhhhHHHHHHHHHHHHHHHHHHh
Q 014683 188 AALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQI 267 (420)
Q Consensus 188 aa~~~~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~ 267 (420)
++.++.......... .+ ..+.+|++++++++++++++||+|++||+||||+|++++++.++++.++..
T Consensus 79 ~a~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~iv~~~Na~Nl~DGldGLa~g~~~i~~~~l~~~~~~~- 146 (253)
T cd06854 79 AAALALYALGPLTSL---------LL--NFLPPWLIALLLLLAIVWIINLYNFMDGIDGLAGGEALVVFLALALLGYLA- 146 (253)
T ss_pred HHHHHHHHhhhHhhh---------cc--hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-
Confidence 887654322110000 01 235678999999999999999999999999999999999999988776542
Q ss_pred ccCCCchhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q 014683 268 GASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLS 347 (420)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGSl~lG~~la~i~i~~~~~~~~~~~~~P~~~~~~l~ 347 (420)
++.....++++++|+++|||+||+||||+||||+||+++|+.+|+.++.+.++.... ..+.++-....
T Consensus 147 ----------~~~~~~~~~~~l~ga~lgFL~~N~~pAkiFmGD~GS~~lG~~la~~~i~~~~~~~~~--~~~l~~~~~p~ 214 (253)
T cd06854 147 ----------GEPALALLALALAGALLGFLPFNWPPAKIFMGDVGSTFLGFLLAALLLLLALSGQSP--WAWLLLLSPFL 214 (253)
T ss_pred ----------cchHHHHHHHHHHHHHHHHHHhhCChhhcccccccHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHH
Confidence 112234567889999999999999999999999999999999999999886543221 22223322344
Q ss_pred hchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhCCCChHHH
Q 014683 348 VPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKMSEGSL 396 (420)
Q Consensus 348 vp~l~~i~~R~~~~~~~f~~d~~Hl~~~~~~~l~nl~L~~~G~~se~~v 396 (420)
++++.+++||.++||++|+|||+|+||. +.+.| +||+|+
T Consensus 215 ~D~~~~i~~R~~~g~~~~~~dr~Hlhh~---------l~~~g-~s~~~v 253 (253)
T cd06854 215 VDATVTLLRRLLRGENIFQAHRKHLYQR---------LARAG-KSHRKV 253 (253)
T ss_pred HHHHHHHHHHHHcCCCCCCCchhhHHHH---------HHHcC-CCCCCC
Confidence 5577789999999999999999999993 66679 999874
No 10
>PRK14654 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional
Probab=100.00 E-value=1.6e-50 Score=399.51 Aligned_cols=286 Identities=24% Similarity=0.369 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCCC--cccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHH
Q 014683 82 AGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQG--TIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALA 159 (420)
Q Consensus 82 ~afllt~~~~p~~~~~~~r~gl~~~di~k~~~r~h--~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~ 159 (420)
++|++|.+++|.++++++|+|+ ++|+||+++++| |++||++||++++.+.++...+ . .+. ...+.
T Consensus 4 ~sf~~s~~~~p~~i~~~~k~~~-~~~ir~~g~~~H~~k~~tP~mGGi~i~~~~~~~~~~----~---~~~-----~~~l~ 70 (302)
T PRK14654 4 ANFLLNLFLYPILIKLFRRRRI-GQYIRKEGPDLHGYKEGTPTMGGILFVLTGFLFGMI----S---KTN-----TMVLL 70 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCCcccccccccccCCCCCcCCcHHHHHHHHHHHHH----H---HHH-----HHHHH
Confidence 5788999999999999999996 778888887778 8899999999998755443211 1 011 12345
Q ss_pred HHHHHHHHHHhhccC--------CCchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccccceechhHHHHHHHHHHH
Q 014683 160 SICFMLLLGFVDDVL--------DVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLA 231 (420)
Q Consensus 160 ~~~~~~liG~lDD~~--------~l~~~~Kl~lq~~aa~~~~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~i 231 (420)
+...++++|++||+. +++++.|+++|++++.+++. +.. .... .|+++. .+++++++++++++++
T Consensus 71 ~~~~~~~iG~lDD~~~l~~~~~~gL~~~~Kl~~q~~~a~~~~~-~~~-~~~~-----~~~~~~-~~~lg~~~~~~~~~~i 142 (302)
T PRK14654 71 GMFLFFLIGFLDDFLSVARKDSTGLKTYQKALLQTLAAFIMLL-LIR-PETN-----VDFFGF-TIEMGKWYYLFALLVI 142 (302)
T ss_pred HHHHHHHHHHHhccHhhhccCCCCCCHHHHHHHHHHHHHHHHH-HHh-hccc-----cccccc-cccccHHHHHHHHHHH
Confidence 666788999999999 46889999999999987532 221 1112 234553 3567888889999999
Q ss_pred HHHHhHhhhhcCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCch
Q 014683 232 VFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDT 311 (420)
Q Consensus 232 v~~~NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDt 311 (420)
++++||+|++||+||||+|++++....+. ..... .. .....+.+++|+++|||+||+||||+||||+
T Consensus 143 v~~~NavNl~DGlDGLa~g~~~~~~~~~~--~~~~~----------~~-~~~~~~~~l~gallGFL~~N~~PAkIFMGDt 209 (302)
T PRK14654 143 VGSSNAMNLTDGLDGLAGWIYVSGSIPYW--FFLKE----------RG-VSEDILLILGAGVLAFLVFNSKPAKIFMGDT 209 (302)
T ss_pred HHHHHHhHHhhccchHHHHHHHHHHHHHH--HHhcc----------cc-HHHHHHHHHHHHHHHHHhhcCChhheeccch
Confidence 99999999999999999988765443222 11110 01 1123477899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhCCC
Q 014683 312 YTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKM 391 (420)
Q Consensus 312 GSl~lG~~la~i~i~~~~~~~~~~~~~P~~~~~~l~vp~l~~i~~R~~~~~~~f~~d~~Hl~~~~~~~l~nl~L~~~G~~ 391 (420)
||+++|+.+|++++..+++...+.....++.|.+..+-|+..+.. +||+.|+ +|+.||| +|+.| |
T Consensus 210 GSl~LG~~la~~~i~~~~~~~~~i~~~~~v~e~lsviiQv~~~~~---~~rrif~-----~~p~Hhh------~e~~G-w 274 (302)
T PRK14654 210 GSITLGGVLGTVSVLTKTEFYLVLFFLIPVIETLSVILQVGSFKI---FKRRIFR-----MSPLHHH------FELIG-W 274 (302)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCceeee-----cCccHHH------HHHcC-C
Confidence 999999999999999888777666666677887777778655443 3555665 4555566 88889 9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 014683 392 SEGSLCAALLVFQAIACCLCFVLRE 416 (420)
Q Consensus 392 se~~vv~~l~~i~~~~~~~~l~l~~ 416 (420)
||+|++..+|.++++++++++..+.
T Consensus 275 ~e~~iv~~f~~i~~~~~~~~~~~~~ 299 (302)
T PRK14654 275 SEEKIVAVFTVFNLISSLVVLEIFG 299 (302)
T ss_pred CcceehHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987653
No 11
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase. Involved in peptidoglycan biosynthesis, the enzyme catalyzes the first of the lipid cycle reactions. Also known as Muramoyl-Pentapeptide Transferase (murX).
Probab=100.00 E-value=2.5e-50 Score=401.99 Aligned_cols=299 Identities=22% Similarity=0.267 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHcCccCcccCCCCCC--CCcccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHH
Q 014683 88 QKMIPVASRYVLRRNLFGYDINKKGTP--QGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFML 165 (420)
Q Consensus 88 ~~~~p~~~~~~~r~gl~~~di~k~~~r--~h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 165 (420)
.+++|.++++++|+|+.++ .++++++ +|+++|||+||++++.+++++..++.. ..+.. ....+.+...++
T Consensus 2 ~~~~p~~i~~~~r~~~~~~-~~~~~~~~h~~~~~tP~~GGiai~~~~~~~~~~~~~--~~~~~-----~~~~l~~~~~~~ 73 (321)
T TIGR00445 2 LLLGPKVIPMLKKLKAGQV-IRSDGPKSHLKKKGTPTMGGIMIVFAIIVSTVLWAQ--LGNPY-----VLLVLFVLLGYG 73 (321)
T ss_pred EEeHHHHHHHHHHhCCCCC-cccccchhccCCCCCCCcChHHHHHHHHHHHHHHHH--ccchH-----HHHHHHHHHHHH
Confidence 4568999999999998653 3443433 367799999999999988877654321 11111 112344555678
Q ss_pred HHHHhhccC--------CCchhhHHHHHHHHHHHHHH--HHhCC-eEEEecCCcccccccceechhHHHHHHHHHHHHHH
Q 014683 166 LLGFVDDVL--------DVPWRVKLILPSFAALPLLM--AYAGH-TSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFC 234 (420)
Q Consensus 166 liG~lDD~~--------~l~~~~Kl~lq~~aa~~~~~--~~~g~-~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~ 234 (420)
++|++||+. +++++.|+++|++++.++.. .+.|. +.+.. |+.+...++++|+++++++++++++
T Consensus 74 ~iG~~DD~~~~~~~~~~gl~~~~rl~~q~~~a~~~~~~~~~~~~~~~~~~-----p~~~~~~~~lg~~~~~~~~~~iv~~ 148 (321)
T TIGR00445 74 FIGFVDDYRKIKRKSNKGLTAKQKLFGQIIIALIFCTWLYYYGPDTFIYI-----PFIKDFMFDLGLFYILLAYFVLVGT 148 (321)
T ss_pred HHHHHHhHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEec-----cccccccccccHHHHHHHHHHHHHH
Confidence 999999999 59999999999999887532 12232 22222 3333223567888999999999999
Q ss_pred HhHhhhhcCchhhhHHHHHHHHHHHHHHHHHHhccC-----CCchhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccC
Q 014683 235 TNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGAS-----LDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVG 309 (420)
Q Consensus 235 ~NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~~~~-----~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmG 309 (420)
+||+|++||+|||++|++++++.++++.++...... ..|+.++... ...++++++|+++|||+|||||||+|||
T Consensus 149 ~Na~N~~DGlDGLa~g~~~i~~~~l~~~~~~~g~~~~~~~l~~~~~~~~~~-~~~~~~~l~ga~lgFL~fN~~pAkIFMG 227 (321)
T TIGR00445 149 SNAVNLTDGLDGLAIGPSAIAFGALAILAWATGNANFAKYLHIPYLKDSGE-LVIFCTALVGASLGFLWFNAYPAKVFMG 227 (321)
T ss_pred hhhhhhhcccchHhHHHHHHHHHHHHHHHHHccchhHhhhhcccccCcchH-HHHHHHHHHHHHHHHHHhhCChhheecc
Confidence 999999999999999999999999887765321000 0010011111 2356788999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhC
Q 014683 310 DTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFLLSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFG 389 (420)
Q Consensus 310 DtGSl~lG~~la~i~i~~~~~~~~~~~~~P~~~~~~l~vp~l~~i~~R~~~~~~~f~~d~~Hl~~~~~~~l~nl~L~~~G 389 (420)
|+||+++|+.+|++++..+++...+....|.++|....+. ...+|.++||++|++ .|+|| + +++.|
T Consensus 228 D~GS~~LG~~la~~~i~~~~~~~~l~~~~~~i~D~~~vi~---~v~~r~~~g~~~f~~--~~~Hh---~------l~~~G 293 (321)
T TIGR00445 228 DTGSLALGGALGAVAILTKNEILLVIMGGVFVIETLSVIL---QVGSYKTTKKRIFKM--APIHH---H------FELKG 293 (321)
T ss_pred chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCCCCC--CchHH---H------HHHcC
Confidence 9999999999999999987655555555566666533222 122477789999998 46665 3 67789
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH
Q 014683 390 KMSEGSLCAALLVFQAIACCLCFVLR 415 (420)
Q Consensus 390 ~~se~~vv~~l~~i~~~~~~~~l~l~ 415 (420)
|||+|++..+|.++.+++++++++.
T Consensus 294 -~s~~~v~~~~~~i~~~~~~~~~~~~ 318 (321)
T TIGR00445 294 -WSEPRVVVRFWIISLLLALVALATL 318 (321)
T ss_pred -CChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998643
No 12
>cd06852 GT_MraY Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.
Probab=100.00 E-value=9.3e-47 Score=370.17 Aligned_cols=267 Identities=22% Similarity=0.278 Sum_probs=194.7
Q ss_pred CCCcccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccC--------CCchhhHHHHH
Q 014683 114 PQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVL--------DVPWRVKLILP 185 (420)
Q Consensus 114 r~h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~lDD~~--------~l~~~~Kl~lq 185 (420)
+.|+++|||+||++++.+++++..++.... +.. ....+.+...++++|++||+. ++|++.|+++|
T Consensus 5 ~~h~~~~P~~GGiai~~~~~~~~~~~~~~~--~~~-----~~~~l~~~~~~~~vG~~DD~~~l~~~~~~~l~~~~rL~~q 77 (280)
T cd06852 5 HLKKAGTPTMGGILFILAILISTLLWADLD--SPE-----VLLLLLLTLGFGLIGFLDDYLKVVKKRNLGLSARQKLLLQ 77 (280)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHHHcc--cHH-----HHHHHHHHHHHHhhhHHHhhHHHhccCCCCCCHHHHHHHH
Confidence 459999999999999999888765442211 111 112345556678999999999 56999999999
Q ss_pred HHHHHHHHHHHhCCeEEEecCCcccccccceechhHHHHHHHHHHHHHHHhHhhhhcCchhhhHHHHHHHHHHHHHHHHH
Q 014683 186 SFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIM 265 (420)
Q Consensus 186 ~~aa~~~~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~sli~~~~l~i~~~~ 265 (420)
++++.++....... ....+....|+.+...++++|++++++++++++++|++|++||+||+++|++++++.++++.+..
T Consensus 78 ~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~v~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l~~~~~~ 156 (280)
T cd06852 78 FLIAIVFALLLYYF-NGSGTLITLPFFKNGLIDLGILYIPFAIFVIVGSSNAVNLTDGLDGLAAGVSIIVALALAIIAYL 156 (280)
T ss_pred HHHHHHHHHHHHHh-cccccceeccccccccccchHHHHHHHHHHHHHHhhHhhhccCchhHHHHHHHHHHHHHHHHHHH
Confidence 99988764332110 00000001112221246778999999999999999999999999999999999999988877654
Q ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 014683 266 QIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLNFL 345 (420)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGSl~lG~~la~i~i~~~~~~~~~~~~~P~~~~~~ 345 (420)
.. +......++++++|+++|||+|||||||+||||+||+++|+.+|++++.++++...+....|.+.|..
T Consensus 157 ~~----------~~~~~~~~~~~l~ga~lgFL~~N~~pAkIFmGD~GS~~lG~~la~~~i~~~~~~~~~i~~~~~l~d~~ 226 (280)
T cd06852 157 AG----------NAVFLAVFCAALVGACLGFLWFNAYPAKVFMGDTGSLALGGALAALAILTKQELLLLIIGGVFVIEAL 226 (280)
T ss_pred hc----------ChhHHHHHHHHHHHHHHHHHHHhcCcceEEeechHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 21 11102355678999999999999999999999999999999999999988765444444555555543
Q ss_pred hhhchhheeeecccCCCCCCCCCCCccccCCCchhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Q 014683 346 LSVPQLFGFVKCPRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKMSEGSLCAALLVFQAIACCLCFV 413 (420)
Q Consensus 346 l~vp~l~~i~~R~~~~~~~f~~d~~Hl~~~~~~~l~nl~L~~~G~~se~~vv~~l~~i~~~~~~~~l~ 413 (420)
..+ +.++.+|.+ ||++|+ ++|+|| + +++.| +||+|++..++.++.++++++++
T Consensus 227 ~~~--~~~~~~r~~-g~~~f~--~~h~hh---~------l~~~g-~s~~~v~~~~~~i~~~~~~~~~~ 279 (280)
T cd06852 227 SVI--LQVGSFKLT-GKRIFK--MAPLHH---H------FELKG-WSETKVVVRFWIISLILALIGLL 279 (280)
T ss_pred HHH--HHHHHHHHc-CCCCCC--CCCHHH---H------HHHcC-CChhHHHHHHHHHHHHHHHHHHh
Confidence 321 122334555 889987 567777 2 66678 99999999999999999998875
No 13
>cd06853 GT_WecA_like This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.
Probab=100.00 E-value=6.4e-47 Score=365.76 Aligned_cols=240 Identities=26% Similarity=0.397 Sum_probs=182.3
Q ss_pred CCCcccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHH
Q 014683 114 PQGTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLL 193 (420)
Q Consensus 114 r~h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~lDD~~~l~~~~Kl~lq~~aa~~~~ 193 (420)
++|+++|||+||++++++++++..++....... ..+....+.+...++++|++||+++++++.|+..|++++.++.
T Consensus 2 k~H~~~~P~~GGi~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~iG~~DD~~~l~~~~kl~~q~~~a~~~~ 77 (249)
T cd06853 2 KVHKGPIPRLGGLAIFLGFLLALLLALLFPFFL----LPELLGLLAGATIIVLLGLLDDLFDLSPKVKLLGQILAALIVV 77 (249)
T ss_pred CCCCCCCCCcCcHHHHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHHheehHHhccCCCHHHHHHHHHHHHHHHH
Confidence 459999999999999998887765543221001 1122335566677889999999999999999999999988664
Q ss_pred HHHhCCeEEEecCCcccccccceechhHHHHHHHHHHHHHHHhHhhhhcCchhhhHHHHHHHHHHHHHHHHHHhccCCCc
Q 014683 194 MAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDP 273 (420)
Q Consensus 194 ~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~~~~~~~ 273 (420)
. .+..... ...|+.+. ..+.+|++++++++++++++|++|++||+||+++|++++++..+.+.++...
T Consensus 78 ~--~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~i~~~~Na~N~~DGidGLa~~~~~i~~~~l~~~~~~~~------ 145 (249)
T cd06853 78 F--GGGVILS---LLGPFGGG-IILLGWLSIPLTVLWIVGIINAINLIDGLDGLAGGVALIASLALAILALLNG------ 145 (249)
T ss_pred H--hcCeeee---cccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcC------
Confidence 2 2321111 12232332 4567899999999999999999999999999999999999988877765421
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhhHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHhhhchhh
Q 014683 274 EYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSET-LLIFFLPQVLNFLLSVPQLF 352 (420)
Q Consensus 274 ~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGSl~lG~~la~i~i~~~~~~~-~~~~~~P~~~~~~l~vp~l~ 352 (420)
+.....++++++|+++||++|||||||+||||+||+++|+.+|+.++..+++.. ......|..+-....++++.
T Consensus 146 -----~~~~~~~~~~l~~a~lgFl~~N~~pakiFmGD~GS~~lG~~la~~~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~ 220 (249)
T cd06853 146 -----QVLVALLALALAGALLGFLPYNFHPARIFMGDAGSLFLGFLLAVLSILGTQKSSTAISPVVPLLILAVPLFDTLF 220 (249)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHhCCcccEEeeCchHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHH
Confidence 112335677899999999999999999999999999999999999999876521 11223333333345556788
Q ss_pred eeeecccCCCCCCCCCCCcccc
Q 014683 353 GFVKCPRHRLPGFNPQTGLLTG 374 (420)
Q Consensus 353 ~i~~R~~~~~~~f~~d~~Hl~~ 374 (420)
+++||.++||++|+|||+|+||
T Consensus 221 ~i~rR~~~g~~~f~~dr~Hlh~ 242 (249)
T cd06853 221 VIIRRLLRGRSPFQADRDHLHH 242 (249)
T ss_pred HHHHHHHcCCCCCCCCchhHHH
Confidence 9999999999999999999999
No 14
>cd06851 GT_GPT_like This family includes eukaryotic UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase (GPT) and archaeal GPT-like glycosyltransferases. Eukaryotic GPT catalyzes the transfer of GlcNAc-1-P from UDP-GlcNAc to dolichol-P to form GlcNAc-P-P-dolichol. The reaction is the first step in the assembly of dolichol-linked oligosaccharide intermediates and is essential for eukaryotic N-linked glycosylation. GPT activity has been identified in all eukaryotic cells examined to date. Evidence for the existence of the N-glycosylation pathway in archaea has emerged and genes responsible for the pathway have been identified. A glycosyl transferase gene Mv1751 in M. voltae encodes for the enzyme that carries out the first step in the pathway, the attachment of GlcNAc to a dolichol lipid carrier in the membrane. A lethal mutation in the alg7 (GPT) gene in Saccharomyces cerevisiae was successfully complemented with Mv1751, the archaeal gene, indicating eukaryotic and archaeal enzymes may use the
Probab=100.00 E-value=8.7e-45 Score=345.15 Aligned_cols=220 Identities=33% Similarity=0.466 Sum_probs=171.7
Q ss_pred CcccCCCCCCCCcccCCCCchHHHHHHHHHHHHHHHhhccc-cchhhHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHH
Q 014683 105 GYDINKKGTPQGTIKVPESLGIVVGAVFLVLAILFQYFNFT-ADSNWLVEYNAALASICFMLLLGFVDDVLDVPWRVKLI 183 (420)
Q Consensus 105 ~~di~k~~~r~h~~~~P~~GGiai~~~~li~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~liG~lDD~~~l~~~~Kl~ 183 (420)
|+|+|||++ ++|||+||++++.++.++..++...... .++....++...+.+...++++|++||++++|+|.|+.
T Consensus 2 g~d~~k~~~----~~tP~~GGi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iG~lDD~~~l~~~~Kl~ 77 (223)
T cd06851 2 GKDMNKKGN----VMIPEPGGISILIGFVASEITLIFFPFLSFPHFPISEILAALITSVLGFSVGIIDDRLTMGGWFKPV 77 (223)
T ss_pred CCCCCCCCC----CCCCCcchHHHHHHHHHHHHHHHHccccccccchHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 689999865 5999999999999988877654321110 00000112223455566788999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCeEEEecCCcccccccceechhHHHHHHHHHHHHHHHhHhhhhcCchhhhHHHHHHHHHHHHHHH
Q 014683 184 LPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHN 263 (420)
Q Consensus 184 lq~~aa~~~~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~sli~~~~l~i~~ 263 (420)
+|++++.++.........+. .|+.+. .++.+|++++++++++++++||+|++||+|||++|++++++.++++.+
T Consensus 78 ~q~~~a~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~iv~~~Na~N~~DGiDGLa~g~~~i~~~~l~~~~ 151 (223)
T cd06851 78 ALAFAAAPILLLGAYDSNLD-----FPLFGG-SVKIPSLYLVLVVFMIVITGNAFNSIAGLNGVEAGFTTIISFALAISL 151 (223)
T ss_pred HHHHHHHHHHHHHHhcccee-----eccccc-chhhhHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 99999886543222212222 244442 367788999999999999999999999999999999999999988776
Q ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 014683 264 IMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHFSETLLIFFLPQVLN 343 (420)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGSl~lG~~la~i~i~~~~~~~~~~~~~P~~~~ 343 (420)
+... +.....++.+++|+++|||+||||||||||||+||+++|+.+|++++.++++......+.|+++|
T Consensus 152 ~~~~-----------~~~~~~~~~~l~gallgFL~~N~~PAkIFMGD~GS~~lG~~la~~~i~~~~~~~~~~~~~P~~i~ 220 (223)
T cd06851 152 LVQQ-----------NYEIGIACLCLAFASLAFLYYNKYPSRIFPGDTGAYMFGATYAVVAILGEVEKIAAVAFIPAIIN 220 (223)
T ss_pred HHcc-----------chHHHHHHHHHHHHHHHHHHhhcChhheeccchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5421 12234667889999999999999999999999999999999999999999998888999999999
Q ss_pred HH
Q 014683 344 FL 345 (420)
Q Consensus 344 ~~ 345 (420)
|+
T Consensus 221 f~ 222 (223)
T cd06851 221 FF 222 (223)
T ss_pred hc
Confidence 75
No 15
>cd06912 GT_MraY_like This subfamily is composed of uncharacterized bacterial glycosyltransferases in the MraY-like family. This family contains both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases, which catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate. This is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. The three bacterial members MraY, WecA, and WbpL/WbcO, utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of their biosynthetic end products implies that UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or UDPN-acetyl-D-
Probab=100.00 E-value=3.8e-40 Score=306.92 Aligned_cols=190 Identities=20% Similarity=0.290 Sum_probs=145.2
Q ss_pred CCCCC-CcccCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccCCCc-hhhHHHHHHHH
Q 014683 111 KGTPQ-GTIKVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDVP-WRVKLILPSFA 188 (420)
Q Consensus 111 ~~~r~-h~~~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~lDD~~~l~-~~~Kl~lq~~a 188 (420)
|++|| |+++|||+||++++++++++..++.... .. +....+.+...++++|++||+++++ +|.|+.+|+++
T Consensus 1 P~~rk~H~~~~P~~GGi~i~~~~~i~~~~~~~~~--~~-----~~~~l~~~~~~~~~iG~~DD~~~l~~~~~kl~~q~~~ 73 (193)
T cd06912 1 DGIQKFHTRPTPRIGGVAIFLGLLAGLLLLSLLS--GS-----LLLLLLLAALPAFLAGLLEDITKRVSPRIRLLATFLS 73 (193)
T ss_pred CCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHcc--ch-----HHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHH
Confidence 45555 9999999999999998877765432111 11 1123455566788999999999999 99999999999
Q ss_pred HHHHHHHHhCCeEEEecCCcccccccceechhHHHHHHHHHHHHHHHhHhhhhcCchhhhHHHHHHHHHHHHHHHHHHhc
Q 014683 189 ALPLLMAYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIG 268 (420)
Q Consensus 189 a~~~~~~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~~ 268 (420)
+.++.. +.+.. ++....|+.+. .++.+|++++++++++++++||+|++||+||+++|++++++..+++.++...
T Consensus 74 a~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~iv~~~Na~N~~DGidGLa~g~~~i~~~~l~~~~~~~g- 147 (193)
T cd06912 74 ALLAVW-LLGAS---ITRLDLPGLDL-LLSFPPFAIIFTIFAVAGVANAFNIIDGFNGLASGVAIISLLSLALVAFQVG- 147 (193)
T ss_pred HHHHHH-HhcCc---cceeecccccc-chhhhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcC-
Confidence 986543 23321 11111233332 3566889999999999999999999999999999999999999887765321
Q ss_pred cCCCchhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhhHHHHHHHHHH
Q 014683 269 ASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVV 323 (420)
Q Consensus 269 ~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGSl~lG~~la~i 323 (420)
+.. ...++++++|+++|||+||+||||+||||+||+++|+.+++.
T Consensus 148 ---------~~~-~~~~~~~l~gallgFL~~N~~pAkiFmGD~GS~~lG~~la~l 192 (193)
T cd06912 148 ---------DTD-LAFLALLLAGALLGFLIFNFPFGKIFLGDGGAYLLGFLLAWL 192 (193)
T ss_pred ---------CHH-HHHHHHHHHHHHHHHHHHhCChhheeccchhhHHHHHHHHHh
Confidence 111 235678899999999999999999999999999999999975
No 16
>cd06499 GT_MraY-like Glycosyltransferase 4 (GT4) includes both eukaryotic and prokaryotic UDP-D-N-acetylhexosamine:polyprenol phosphate D-N-acetylhexosamine-1-phosphate transferases. They catalyze the transfer of a D-N-acetylhexosamine 1-phosphate to a membrane-bound polyprenol phosphate, which is the initiation step of protein N-glycosylation in eukaryotes and peptidoglycan biosynthesis in bacteria. One member, D-N-acetylhexosamine 1-phosphate transferase (GPT) is a eukaryotic enzyme, which is specific for UDP-GlcNAc as donor substrate and dolichol-phosphate as the membrane bound acceptor. The bacterial members MraY, WecA, and WbpL/WbcO utilize undecaprenol phosphate as the acceptor substrate, but use different UDP-sugar donor substrates. MraY-type transferases are highly specific for UDP-N-acetylmuramate-pentapeptide, whereas WecA proteins are selective for UDP-N-acetylglucosamine (UDP-GlcNAc). The WbcO/WbpL substrate specificity has not yet been determined, but the structure of thei
Probab=100.00 E-value=2.4e-38 Score=292.95 Aligned_cols=180 Identities=33% Similarity=0.518 Sum_probs=139.8
Q ss_pred cCCCCchHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhccCCC----chhhHHHHHHHHHHHHHH
Q 014683 119 KVPESLGIVVGAVFLVLAILFQYFNFTADSNWLVEYNAALASICFMLLLGFVDDVLDV----PWRVKLILPSFAALPLLM 194 (420)
Q Consensus 119 ~~P~~GGiai~~~~li~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~liG~lDD~~~l----~~~~Kl~lq~~aa~~~~~ 194 (420)
+|||+||++++.+++++..++.. ..+. +....+.+...++++|++||++++ |+|.|+.+|++++.++..
T Consensus 1 ~tP~~GGi~i~~~~~~~~~~~~~--~~~~-----~~~~~l~~~~~~~~iG~~DD~~~l~~gl~~~~kl~~q~~~a~~~~~ 73 (185)
T cd06499 1 PTPTMGGLAILLGFLLGVLLYIP--HSNT-----LILLALLSGLVAGIVGFIDDLLGLKVELSEREKLLLQILAALFLLL 73 (185)
T ss_pred CCCCcccHHHHHHHHHHHHHHHh--cchH-----HHHHHHHHHHHHHHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999988877654321 1111 112345566778899999999999 999999999999987643
Q ss_pred HHhCCeEEEecCCcccccccceechhHHHHHHHHHHHHHHHhHhhhhcCchhhhHHHHHHHHHHHHHHHHHHhccCCCch
Q 014683 195 AYAGHTSIIIPKPLVPYVGLEILDLGWIYKLYMFLLAVFCTNSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPE 274 (420)
Q Consensus 195 ~~~g~~~i~ip~~~~p~~g~~~~~lg~l~~~l~~l~iv~~~NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~~~~~~~~ 274 (420)
.......+.. |+ +. .++++|++++++++++++++||+|++||+|||++|++++++.++.+.++...
T Consensus 74 ~~~~~~~~~~-----~~-~~-~~~l~~~~~~~~~~~iv~~~Na~N~~DGlDGLa~g~~~i~~~~l~~~~~~~~------- 139 (185)
T cd06499 74 IGGGHTTVTT-----PL-GF-VLDLGIFYIPFAIIAIVGATNAVNLIDGMDGLAAGISVIASIACALFALLSG------- 139 (185)
T ss_pred HHHHhceeec-----Cc-cc-hhhhhHHHHHHHHHHHHHHhhHhHHhhccchHHHHHHHHHHHHHHHHHHHcC-------
Confidence 3222122222 22 22 3677899999999999999999999999999999999999999887765421
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhhHHHHHHHHHH
Q 014683 275 YKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYFAGMTMAVV 323 (420)
Q Consensus 275 ~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGSl~lG~~la~i 323 (420)
+.....++++++|+++|||+|||||||+||||+||+++|+.++++
T Consensus 140 ----~~~~~~~~~~l~ga~lgFL~~N~~pAkiFmGD~GS~~lG~~la~~ 184 (185)
T cd06499 140 ----QTTSALLFIILAGACLGFLYFNFYPAKIFMGDTGSYFLGAAYAAV 184 (185)
T ss_pred ----ChHHHHHHHHHHHHHHHHHHHhCCccceecccHHHHHHHHHHHHh
Confidence 112335677899999999999999999999999999999999986
No 17
>PF00953 Glycos_transf_4: Glycosyl transferase family 4; InterPro: IPR000715 This entry represents a family of UDP-GlcNAc/MurNAc: polyisoprenol-P GlcNAc/MurNAc-1-P transferases. Members of the family include eukaryotic N-acetylglucosamine-1-phosphate transferases, which catalyse the conversion of UDP-N-acteyl-D-glucosamine and dolichyl phosphate to UMP and N-acetyl-D-glucosaminyl-diphosphodolichol in the glycosylation pathway; and bacterial phospho-N-acetylmuramoyl-pentapeptide-transferases, which catalyse the first step of the lipid cycle reactions in the biosynthesis of cell wall peptidoglycan.; GO: 0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity, 0016021 integral to membrane
Probab=100.00 E-value=2.4e-33 Score=253.75 Aligned_cols=155 Identities=31% Similarity=0.545 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhCCeEEEecCCcccccccceechh-HHHHHHHHHHHHHHH
Q 014683 157 ALASICFMLLLGFVDDVLDVPWRVKLILPSFAALPLLMAYAGHTSIIIPKPLVPYVGLEILDLG-WIYKLYMFLLAVFCT 235 (420)
Q Consensus 157 ~l~~~~~~~liG~lDD~~~l~~~~Kl~lq~~aa~~~~~~~~g~~~i~ip~~~~p~~g~~~~~lg-~l~~~l~~l~iv~~~ 235 (420)
.+.+...++++|++||++++|++.|+.+|.+++.++...+.+.+.+.. |+.+ ...+++ +++++++++++++.+
T Consensus 4 ~l~~~~~~~~iG~~DD~~~l~~~~rl~~q~~~a~~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~l~~~~i~~~~ 77 (159)
T PF00953_consen 4 LLLALLLIGLIGLLDDLKGLSPRLRLLLQLLAALLLVFLGGGLTSLGI-----PFGG-GIINLGPWLAIILTVLWIVGFI 77 (159)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhccccc-----ccCc-chHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999999999999887543322222222 3332 256777 778899999999999
Q ss_pred hHhhhhcCchhhhHHHHHHHHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHHHHHhhccccCCccccCchhhHH
Q 014683 236 NSINIHAGLNGLEVGQTVVIASAILLHNIMQIGASLDPEYKQAHAFSIYLVQPLLATSLALFSYNWYPSSVFVGDTYTYF 315 (420)
Q Consensus 236 NavNl~DGlDGLa~G~sli~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~l~l~gallgFL~fN~~PAkIFmGDtGSl~ 315 (420)
|++|++||+||+++|++++++..+...++.. ++.....++.+++++++||++|||||||+||||+||++
T Consensus 78 Na~N~~DG~dGla~~~~~i~~~~l~~~~~~~-----------~~~~~~~~~~~l~~a~lgfl~~N~~pakiFmGD~GS~~ 146 (159)
T PF00953_consen 78 NAFNFMDGIDGLAAGVSIIALLALAVIAYLQ-----------GNYELAILCLALAGALLGFLIFNFPPAKIFMGDSGSLF 146 (159)
T ss_pred hHHHhhccCcchHHHHHHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHHHHHHHHCCCCEEEeccHhHHH
Confidence 9999999999999999999999988877543 12223456778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 014683 316 AGMTMAVVGILGH 328 (420)
Q Consensus 316 lG~~la~i~i~~~ 328 (420)
+|+.+++.++.+|
T Consensus 147 lG~~la~~~i~~~ 159 (159)
T PF00953_consen 147 LGFLLAVLAILGH 159 (159)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998876
No 18
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=83.85 E-value=0.2 Score=26.38 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=8.9
Q ss_pred ccCCCCchHHH
Q 014683 118 IKVPESLGIVV 128 (420)
Q Consensus 118 ~~~P~~GGiai 128 (420)
..||+|||+.+
T Consensus 2 ~gTPTMGGi~~ 12 (13)
T PF10555_consen 2 SGTPTMGGIVF 12 (13)
T ss_pred CCCccceeEEE
Confidence 47999999764
No 19
>PF11391 DUF2798: Protein of unknown function (DUF2798); InterPro: IPR021529 This family of proteins has no known function.
Probab=52.93 E-value=73 Score=23.83 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014683 56 FYLLFYHYKIESEL-QRSILINAGLSLAGFFITQKMIPVASRYVLR 100 (420)
Q Consensus 56 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~afllt~~~~p~~~~~~~r 100 (420)
.+..+.+....++. +++.-.......+++...++..|.++|+..|
T Consensus 13 ~v~t~~n~G~~~~f~~~Wl~a~~~a~~vAfp~~l~v~P~v~kl~~~ 58 (60)
T PF11391_consen 13 FVMTLLNVGFSDGFFSRWLKAWLIAWPVAFPISLIVAPLVRKLVER 58 (60)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566676776655 6666666666678999999999999998766
No 20
>COG5373 Predicted membrane protein [Function unknown]
Probab=34.19 E-value=7.3e+02 Score=28.63 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=30.6
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHHHHHH
Q 014683 60 FYHYKIESELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGAVFL 133 (420)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~afllt~~~~p~~~~~~~r~gl~~~di~k~~~r~h~~~~P~~GGiai~~~~l 133 (420)
.++|.+|+-+--+-.......+.+..+... -.+.||++.-. ..++.. ....+=+++|+....+.+
T Consensus 150 LlkY~~E~gl~~p~vRl~~aAv~~lvL~~~-----Ge~lRr~~~~~---~~~~y~-~aP~vLtgaGa~~Lf~tv 214 (931)
T COG5373 150 LLKYAIEAGLFGPEVRLAGAAVLGLVLVAG-----GEWLRRKGFPV---PRQGYA-NAPAVLTGAGALVLFGTV 214 (931)
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHHHh-----HHHHHhccCcc---cccccc-CCchhhcccchHHHHHHH
Confidence 345666776655555555555555443322 23446666411 111111 112356677766544443
No 21
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=33.88 E-value=1e+02 Score=31.03 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.4
Q ss_pred ccCcccCCCCCCCCcccCCC
Q 014683 103 LFGYDINKKGTPQGTIKVPE 122 (420)
Q Consensus 103 l~~~di~k~~~r~h~~~~P~ 122 (420)
.+|+|+|+.++|..++|.|+
T Consensus 69 ~~DrdiD~~~~RT~~RPLps 88 (300)
T PRK12876 69 IIDCAIDKKNPRTSSRVLPA 88 (300)
T ss_pred HHHhcccCCCCCCCCCCCCC
Confidence 46888889888876667776
No 22
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=27.87 E-value=2.6e+02 Score=27.38 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH--hccchH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014683 40 KSGLIFKLCLFFAIPYFYLLFYH--YKIESE-L-QRSILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (420)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~~~~~~~~~~~afllt~~~~p~~~~~~~r~gl 103 (420)
+....++++-+...|...-.-.. .+..++ . ...+...++.++.||+++++.+.++.|+.+|.++
T Consensus 178 ~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~~~~~~~~ 245 (259)
T PF02673_consen 178 DREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLRFLKRRKL 245 (259)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 44456778888888887744332 222111 1 2466777778889999999999999999988875
No 23
>COG3742 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.13 E-value=42 Score=29.41 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.1
Q ss_pred HHHHHHhhccc---cCCccccCchhhHHHH
Q 014683 291 ATSLALFSYNW---YPSSVFVGDTYTYFAG 317 (420)
Q Consensus 291 gallgFL~fN~---~PAkIFmGDtGSl~lG 317 (420)
.+.=+|..|-. |||+.=||||.||.+.
T Consensus 78 ~A~~A~~rfGKg~~HpA~LN~GDCfsYA~A 107 (131)
T COG3742 78 AALRAYRRFGKGRGHPAGLNFGDCFSYALA 107 (131)
T ss_pred HHHHHHHHhCcCCCCcccccchhHHHHHHH
Confidence 45567777776 8999999999999875
No 24
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=21.52 E-value=4.4e+02 Score=26.12 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHHHHH--HHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014683 41 SGLIFKLCLFFAIPYFY--LLFYHYKIESE-LQRSILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (420)
Q Consensus 41 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~afllt~~~~p~~~~~~~r~gl 103 (420)
....+.++-++..|... -.+-.++..+. .........+.++.+|+++++.+..+.++.+|+++
T Consensus 184 r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~AFvv~~~~I~~ll~~i~~~~~ 249 (270)
T COG1968 184 REAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKFLLRFIKRHSF 249 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455666666677665 22333333222 24455566777888999999999999999888885
No 25
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.24 E-value=4.6e+02 Score=21.45 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=12.1
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHH
Q 014683 37 APPKSGLIFKLCLFFAIPYFYLLFYH 62 (420)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (420)
+.|..-....+.+.++=..|...+|.
T Consensus 28 ~sp~W~~p~m~~lmllGL~WiVvyYi 53 (87)
T PF06781_consen 28 PSPRWYAPLMLGLMLLGLLWIVVYYI 53 (87)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhhhc
Confidence 33444444444444444444444444
No 26
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=21.05 E-value=2.9e+02 Score=19.92 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014683 73 ILINAGLSLAGFFITQKMIPVASRYVLRRNL 103 (420)
Q Consensus 73 ~~~~~~~~~~afllt~~~~p~~~~~~~r~gl 103 (420)
++.+++..++++.++-.....+.|..+|.+.
T Consensus 18 iv~AilIl~vG~~va~~v~~~~~~~l~~~~~ 48 (53)
T PF05552_consen 18 IVGAILILIVGWWVAKFVRKLVRRLLEKRGV 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566667778888888888888888888884
Done!