Query 014683
Match_columns 420
No_of_seqs 213 out of 1596
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls4_A High affinity copper up 21.4 30 0.001 21.0 0.0 18 287-304 8-25 (26)
2 2xq2_A Sodium/glucose cotransp 11.5 6E+02 0.02 26.1 8.4 27 87-115 564-590 (593)
3 2kt5_B ICP27; chaperone, mRNA 9.8 1.8E+02 0.006 19.2 2.1 9 3-11 12-20 (40)
4 1s5r_A High mobility group box 9.1 57 0.002 19.2 -0.3 7 1-7 16-22 (26)
5 2xq2_A Sodium/glucose cotransp 7.4 2.6E+02 0.0089 28.9 3.5 22 353-374 570-591 (593)
6 4b4a_A TATC, SEC-independent p 3.8 1.7E+03 0.057 20.1 6.3 59 40-98 64-130 (249)
7 2gpo_C Nuclear receptor-intera 3.5 6E+02 0.02 15.2 1.8 15 368-382 2-16 (26)
8 4b4a_A TATC, SEC-independent p 3.4 1.3E+03 0.044 20.9 5.1 33 67-99 8-40 (249)
9 3tj3_C Nuclear pore complex pr 3.4 6.9E+02 0.023 20.3 2.7 40 1-42 6-51 (114)
10 4dx5_A Acriflavine resistance 3.4 2.3E+03 0.078 23.3 8.1 79 44-122 975-1053(1057)
No 1
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=21.40 E-value=30 Score=21.04 Aligned_cols=18 Identities=11% Similarity=0.359 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhccccCC
Q 014683 287 QPLLATSLALFSYNWYPS 304 (420)
Q Consensus 287 l~l~gallgFL~fN~~PA 304 (420)
...+|+.+|++.|.|.++
T Consensus 8 avvlGa~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 8 AVAAGAGTGYFLFSWKKX 25 (26)
Confidence 456899999999988764
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=11.55 E-value=6e+02 Score=26.10 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHcCccCcccCCCCCCC
Q 014683 87 TQKMIPVASRYVLRRNLFGYDINKKGTPQ 115 (420)
Q Consensus 87 t~~~~p~~~~~~~r~gl~~~di~k~~~r~ 115 (420)
+.+++-.-+|..+|+.- .|...|+++.
T Consensus 564 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 590 (593)
T 2xq2_A 564 TILLISYGIKKLIKASY--KSGGSPGHHH 590 (593)
T ss_dssp HHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHhcCCC--CCCCCCCccc
Confidence 44444444555555553 3455666654
No 3
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=9.82 E-value=1.8e+02 Score=19.18 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=4.1
Q ss_pred hhccccchh
Q 014683 3 ARKRASSRA 11 (420)
Q Consensus 3 ~~~~~~~~~ 11 (420)
+|||+++.+
T Consensus 12 ~RR~~s~~E 20 (40)
T 2kt5_B 12 ARRPSCSPE 20 (40)
T ss_dssp SCCCCCCCC
T ss_pred ccCcCCCcC
Confidence 455554433
No 4
>1s5r_A High mobility group box transcription factor 1; protein-peptide complex, amphipathic helix motif, four- helix bundle, repressor-corepressor complex, transcription; NMR {Synthetic} SCOP: j.114.1.1
Probab=9.10 E-value=57 Score=19.20 Aligned_cols=7 Identities=57% Similarity=0.828 Sum_probs=3.4
Q ss_pred Chhhccc
Q 014683 1 MAARKRA 7 (420)
Q Consensus 1 ~~~~~~~ 7 (420)
|++|||+
T Consensus 16 mar~r~a 22 (26)
T 1s5r_A 16 MARQRRA 22 (26)
T ss_dssp HHHTTTC
T ss_pred HHHHhhh
Confidence 4445444
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=7.37 E-value=2.6e+02 Score=28.91 Aligned_cols=22 Identities=9% Similarity=-0.289 Sum_probs=1.9
Q ss_pred eeeecccCCCCCCCCCCCcccc
Q 014683 353 GFVKCPRHRLPGFNPQTGLLTG 374 (420)
Q Consensus 353 ~i~~R~~~~~~~f~~d~~Hl~~ 374 (420)
.-+||.+|+.+.-.+..+|-||
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~ 591 (593)
T 2xq2_A 570 YGIKKLIKASYKSGGSPGHHHH 591 (593)
T ss_dssp HHHC------------------
T ss_pred HHHHHHhcCCCCCCCCCCcccC
Confidence 3446665555443345566444
No 6
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=3.82 E-value=1.7e+03 Score=20.12 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=38.1
Q ss_pred ccchHHHHHHHHHHHHHH---HHHHHhcc---ch-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 014683 40 KSGLIFKLCLFFAIPYFY---LLFYHYKI---ES-ELQRSILINAGLSLAGFFITQ-KMIPVASRYV 98 (420)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~-~~~~~~~~~~~~~~~afllt~-~~~p~~~~~~ 98 (420)
...+....+..+.+|++. |.|+.=-+ +. .....+..+..++..+...++ +..|...++.
T Consensus 64 ~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl 130 (249)
T 4b4a_A 64 LIKISLAVGFIIASPVILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFL 130 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678888889988 55555333 22 224555666667777777777 5678887774
No 7
>2gpo_C Nuclear receptor-interacting protein 1; estrogen related receptor, ERR, ERRG, ESRRG, steroid receptor, RIP140, transcription; 1.95A {Homo sapiens} PDB: 2gpp_C*
Probab=3.49 E-value=6e+02 Score=15.19 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=10.1
Q ss_pred CCCccccCCCchhHH
Q 014683 368 QTGLLTGTNDGTLVN 382 (420)
Q Consensus 368 d~~Hl~~~~~~~l~n 382 (420)
+|+|+.+..+++|+-
T Consensus 2 ern~l~~~~n~SLLL 16 (26)
T 2gpo_C 2 ERNNIKQAANNSLLL 16 (26)
T ss_pred ccccCCCCCcchHHH
Confidence 577888876665543
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=3.42 E-value=1.3e+03 Score=20.91 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014683 67 SELQRSILINAGLSLAGFFITQKMIPVASRYVL 99 (420)
Q Consensus 67 ~~~~~~~~~~~~~~~~afllt~~~~p~~~~~~~ 99 (420)
+|+|+..+.+++..++++++++....-+..+..
T Consensus 8 ~ELR~Rli~~~i~~~v~~~~~~~~~~~i~~~l~ 40 (249)
T 4b4a_A 8 RELRYRLIISIIAFLIGSGIAFYFAKYVFEILK 40 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999998888899888887776666543
No 9
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=3.41 E-value=6.9e+02 Score=20.35 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=0.0
Q ss_pred ChhhccccchhhcccCCCCCCCCCCCCCCCCCCC------CCCCCccc
Q 014683 1 MAARKRASSRAIATATDTDTSKSETPTSQEHADP------PIAPPKSG 42 (420)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 42 (420)
|+ ||.+.....-+.-.+++.++++.+...++. .|.+|+.+
T Consensus 6 MA--KR~A~~qLT~dNwd~eed~ee~GtF~~AS~eVLs~RkIkkaKRr 51 (114)
T 3tj3_C 6 MA--KRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAKRR 51 (114)
T ss_dssp CC--CCCCSSCCCTTTSSSCCCCCCCCCCCBCCHHHHHHSCCCCCCCC
T ss_pred hh--hhccccccccccccccccccccCCcccCCHHHHhcccccccccc
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=3.39 E-value=2.3e+03 Score=23.26 Aligned_cols=79 Identities=13% Similarity=-0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCcccCCCCCCCCcccCCC
Q 014683 44 IFKLCLFFAIPYFYLLFYHYKIESELQRSILINAGLSLAGFFITQKMIPVASRYVLRRNLFGYDINKKGTPQGTIKVPE 122 (420)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~afllt~~~~p~~~~~~~r~gl~~~di~k~~~r~h~~~~P~ 122 (420)
+..-++...+.+..+.+....=.+-++..-+..++..+++.++|+++.|.+..+..++..-.+.-+++.+++++.+.++
T Consensus 975 il~t~ltt~~g~~pl~~~~g~g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1053 (1057)
T 4dx5_A 975 ILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFSRKNEDIEHSHTVDHHLEHH 1053 (1057)
T ss_dssp HHHHHHHHHHHTHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCSSCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhhc
Done!