Query 014683
Match_columns 420
No_of_seqs 213 out of 1596
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 15:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014683.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014683hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 11.5 1.1E+02 0.0081 19.6 3.5 33 358-401 2-34 (51)
2 d2gqba1 a.282.1.1 (A:1-130) Hy 7.4 1.8E+02 0.013 22.3 3.8 15 34-48 40-54 (130)
3 d1x6aa2 g.39.1.3 (A:42-75) Lim 4.9 38 0.0028 20.2 -1.3 12 304-315 6-17 (34)
4 d1q79a1 a.160.1.1 (A:215-364) 3.9 4.9E+02 0.035 20.1 4.6 27 92-130 11-37 (150)
5 d2cbia2 c.1.8.10 (A:179-495) H 3.7 91 0.0066 27.8 -0.3 16 296-311 214-234 (317)
6 d2choa2 c.1.8.10 (A:127-436) G 3.7 93 0.0068 27.6 -0.3 16 296-311 209-229 (310)
7 d2vv5a3 f.34.1.1 (A:27-112) Me 3.5 6.1E+02 0.044 16.7 4.8 28 75-102 7-34 (86)
8 d2q66a1 a.160.1.1 (A:202-351) 3.4 5E+02 0.036 20.0 4.1 27 92-130 11-37 (150)
9 d1xrda1 f.3.1.1 (A:1-52) Light 2.3 7.2E+02 0.053 15.7 3.1 19 227-245 27-45 (52)
10 d1rh5b_ f.23.28.1 (B:) Preprot 2.3 5.4E+02 0.04 16.6 2.5 12 159-170 32-43 (56)
No 1
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.47 E-value=1.1e+02 Score=19.63 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=23.3
Q ss_pred ccCCCCCCCCCCCccccCCCchhHHHHHHHhCCCChHHHHHHHH
Q 014683 358 PRHRLPGFNPQTGLLTGTNDGTLVNFFLRLFGKMSEGSLCAALL 401 (420)
Q Consensus 358 ~~~~~~~f~~d~~Hl~~~~~~~l~nl~L~~~G~~se~~vv~~l~ 401 (420)
-++.+|.+.++...+-+ |...| ++|.+....+.
T Consensus 2 ~~~~~p~~~~~~~~l~~----------L~~MG-F~~~~a~~AL~ 34 (51)
T d2cpwa1 2 NRQQRPGTIKHGSALDV----------LLSMG-FPRARAQKALA 34 (51)
T ss_dssp CSCCSSCSSSCCCHHHH----------HHHHT-CCHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHH----------HHHcC-CCHHHHHHHHH
Confidence 35566777787777765 55579 99988776654
No 2
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=7.37 E-value=1.8e+02 Score=22.32 Aligned_cols=15 Identities=27% Similarity=0.255 Sum_probs=8.2
Q ss_pred CCCCCCccchHHHHH
Q 014683 34 PPIAPPKSGLIFKLC 48 (420)
Q Consensus 34 ~~~~~~~~~~~~~~~ 48 (420)
++.+.+.+-+.+++-
T Consensus 40 ~~~~~~~VDV~aiLd 54 (130)
T d2gqba1 40 QPTAAPSIDVAPILD 54 (130)
T ss_dssp CCCCCSSEECHHHHH
T ss_pred CCCCCCcccHHHHHH
Confidence 344556666665544
No 3
>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.86 E-value=38 Score=20.19 Aligned_cols=12 Identities=25% Similarity=0.384 Sum_probs=8.8
Q ss_pred CccccCchhhHH
Q 014683 304 SSVFVGDTYTYF 315 (420)
Q Consensus 304 AkIFmGDtGSl~ 315 (420)
-|+|.||.-||.
T Consensus 6 C~~fIgdgdsya 17 (34)
T d1x6aa2 6 CKVIIEDGDAYA 17 (34)
T ss_dssp TCCBCCTTSCEE
T ss_pred cccEEecCceEE
Confidence 478888877764
No 4
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.92 E-value=4.9e+02 Score=20.08 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHHH
Q 014683 92 PVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGA 130 (420)
Q Consensus 92 p~~~~~~~r~gl~~~di~k~~~r~h~~~~P~~GGiai~~ 130 (420)
..++-+++|+|+.+ ++-|- .|||...+
T Consensus 11 R~IKlWAk~RGIYs---n~~Gf---------lGGI~waI 37 (150)
T d1q79a1 11 RAIKLWAKRHNIYS---NILGF---------LGGVSWAM 37 (150)
T ss_dssp HHHHHHHHHTTCBC---TTTTS---------BCHHHHHH
T ss_pred HHHHHHHHHccccc---ccccc---------cHHHHHHH
Confidence 44677899999875 44444 68987654
No 5
>d2cbia2 c.1.8.10 (A:179-495) Hyaluronidase catalytic domain {Clostridium perfringens [TaxId: 1502]}
Probab=3.74 E-value=91 Score=27.77 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=14.0
Q ss_pred Hhhcccc-----CCccccCch
Q 014683 296 LFSYNWY-----PSSVFVGDT 311 (420)
Q Consensus 296 FL~fN~~-----PAkIFmGDt 311 (420)
++|.||| |.|+|||.-
T Consensus 214 ~iWDNypvNDy~~~rL~lGp~ 234 (317)
T d2cbia2 214 AVWWNYPVTDYFKGKLALGPM 234 (317)
T ss_dssp EEEECCSCCTTSTTSCCCCCC
T ss_pred eEEeCccccCCCCCceeecCc
Confidence 8899997 899999954
No 6
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=3.68 E-value=93 Score=27.57 Aligned_cols=16 Identities=13% Similarity=0.355 Sum_probs=14.1
Q ss_pred Hhhcccc-----CCccccCch
Q 014683 296 LFSYNWY-----PSSVFVGDT 311 (420)
Q Consensus 296 FL~fN~~-----PAkIFmGDt 311 (420)
++|.||| |.|+|||.-
T Consensus 209 ~iWDNypvNDy~~~rL~lGp~ 229 (310)
T d2choa2 209 YIWWNFPVSDYVRDHLLLGPV 229 (310)
T ss_dssp EEEECCSCCTTSTTCCCCSCC
T ss_pred eEEEcccccCCCcCceEeccc
Confidence 7899997 899999974
No 7
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=3.53 E-value=6.1e+02 Score=16.72 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014683 75 INAGLSLAGFFITQKMIPVASRYVLRRN 102 (420)
Q Consensus 75 ~~~~~~~~afllt~~~~p~~~~~~~r~g 102 (420)
..++...++..++......+.|..+|++
T Consensus 7 ~~l~il~i~~~i~~~i~~~~~~~~~~~~ 34 (86)
T d2vv5a3 7 AALAIIIVGLIIARMISNAVNRLMISRK 34 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444555555555555555554443
No 8
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.36 E-value=5e+02 Score=19.99 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCccCcccCCCCCCCCcccCCCCchHHHHH
Q 014683 92 PVASRYVLRRNLFGYDINKKGTPQGTIKVPESLGIVVGA 130 (420)
Q Consensus 92 p~~~~~~~r~gl~~~di~k~~~r~h~~~~P~~GGiai~~ 130 (420)
..++-+++|+|+.+ ++-|- .|||...+
T Consensus 11 R~IK~WAk~RGIYs---n~~Gy---------lGGI~waI 37 (150)
T d2q66a1 11 RAIKLWAQRRAVYA---NIFGF---------PGGVAWAM 37 (150)
T ss_dssp HHHHHHHHHTTCCC---GGGTS---------CCHHHHHH
T ss_pred HHHHHHHHHccccc---ccccc---------cHHHHHHH
Confidence 44677899999875 44444 68987654
No 9
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=2.30 E-value=7.2e+02 Score=15.67 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHhhhhcCch
Q 014683 227 MFLLAVFCTNSINIHAGLN 245 (420)
Q Consensus 227 ~~l~iv~~~NavNl~DGlD 245 (420)
++=.+..+++-+|-.||-+
T Consensus 27 ~IHfiLLSt~rfNWleg~~ 45 (52)
T d1xrda1 27 LIHFILLSTERFNWLEGAS 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHhccCccccccCCC
Confidence 3344566889999999865
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.26 E-value=5.4e+02 Score=16.55 Aligned_cols=12 Identities=17% Similarity=0.670 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHh
Q 014683 159 ASICFMLLLGFV 170 (420)
Q Consensus 159 ~~~~~~~liG~l 170 (420)
++.++++++||+
T Consensus 32 iG~~i~G~IGf~ 43 (56)
T d1rh5b_ 32 LGISLLGIIGYI 43 (56)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445556666654
Done!