Query 014684
Match_columns 420
No_of_seqs 388 out of 3198
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:31:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02927 antheraxanthin epoxid 100.0 2E-67 4.4E-72 554.0 42.5 418 1-420 249-668 (668)
2 TIGR03219 salicylate_mono sali 99.9 1.3E-26 2.9E-31 236.4 18.9 191 1-199 160-374 (414)
3 PRK06475 salicylate hydroxylas 99.9 4.8E-26 1E-30 231.3 19.3 199 1-221 168-375 (400)
4 PRK08163 salicylate hydroxylas 99.9 6.7E-25 1.5E-29 222.2 20.4 219 2-248 168-390 (396)
5 PRK06753 hypothetical protein; 99.9 1.1E-24 2.5E-29 218.8 20.7 202 1-221 153-354 (373)
6 PRK07236 hypothetical protein; 99.9 3.3E-24 7.2E-29 216.8 18.5 187 1-199 155-376 (386)
7 PRK07538 hypothetical protein; 99.9 2.7E-23 5.8E-28 212.0 19.6 181 1-195 166-363 (413)
8 PRK06847 hypothetical protein; 99.9 4.4E-23 9.6E-28 207.3 18.5 185 1-198 164-351 (375)
9 PRK07588 hypothetical protein; 99.9 2.2E-22 4.9E-27 203.6 16.3 188 1-198 159-349 (391)
10 PRK05868 hypothetical protein; 99.9 4.7E-22 1E-26 200.2 16.9 179 1-192 161-346 (372)
11 TIGR02360 pbenz_hydroxyl 4-hyd 99.8 2.2E-20 4.7E-25 189.3 16.4 184 1-199 164-351 (390)
12 PRK05714 2-octaprenyl-3-methyl 99.8 5.6E-21 1.2E-25 194.3 9.7 166 38-221 204-376 (405)
13 KOG2614 Kynurenine 3-monooxyge 99.8 2.9E-20 6.2E-25 182.2 13.6 181 1-184 164-361 (420)
14 PRK06996 hypothetical protein; 99.8 1.7E-20 3.7E-25 190.5 11.9 194 2-221 177-376 (398)
15 PRK07045 putative monooxygenas 99.8 1.6E-19 3.6E-24 182.5 18.5 188 2-199 167-359 (388)
16 PRK06617 2-octaprenyl-6-methox 99.8 1.8E-20 4E-25 188.8 10.3 191 1-221 161-354 (374)
17 PRK08850 2-octaprenyl-6-methox 99.8 3E-20 6.5E-25 189.1 11.5 200 2-221 170-373 (405)
18 PLN02985 squalene monooxygenas 99.8 1.5E-18 3.3E-23 181.2 19.1 186 1-198 209-401 (514)
19 PRK07494 2-octaprenyl-6-methox 99.8 8.8E-20 1.9E-24 184.4 8.9 166 37-221 202-368 (388)
20 PRK08013 oxidoreductase; Provi 99.8 2.6E-19 5.7E-24 181.9 12.2 168 38-221 204-373 (400)
21 PTZ00367 squalene epoxidase; P 99.8 2.7E-18 5.8E-23 180.7 20.1 195 1-199 220-422 (567)
22 PRK08849 2-octaprenyl-3-methyl 99.8 5.9E-19 1.3E-23 178.4 12.3 160 38-221 203-365 (384)
23 COG0654 UbiH 2-polyprenyl-6-me 99.8 3.5E-19 7.5E-24 180.3 10.4 169 34-221 195-366 (387)
24 PRK08243 4-hydroxybenzoate 3-m 99.8 2.5E-18 5.5E-23 174.3 16.4 184 1-199 164-351 (392)
25 PRK08773 2-octaprenyl-3-methyl 99.8 8.1E-19 1.8E-23 177.7 12.1 166 38-221 205-373 (392)
26 PRK06183 mhpA 3-(3-hydroxyphen 99.8 3.3E-18 7.1E-23 180.4 15.8 162 36-220 210-373 (538)
27 TIGR01989 COQ6 Ubiquinone bios 99.8 3.3E-18 7.2E-23 175.9 14.6 107 103-221 318-424 (437)
28 PRK08244 hypothetical protein; 99.8 4.3E-18 9.4E-23 177.6 15.3 152 36-198 193-344 (493)
29 PRK07333 2-octaprenyl-6-methox 99.8 2.7E-18 5.8E-23 174.3 12.3 167 36-220 201-370 (403)
30 PRK08020 ubiF 2-octaprenyl-3-m 99.8 2.1E-18 4.5E-23 174.5 10.9 166 39-221 206-372 (391)
31 PRK09126 hypothetical protein; 99.8 2.5E-18 5.4E-23 173.9 11.4 200 2-221 169-371 (392)
32 PRK06185 hypothetical protein; 99.8 1.6E-17 3.5E-22 168.9 17.0 171 37-221 204-375 (407)
33 PRK07364 2-octaprenyl-6-methox 99.8 3.5E-18 7.6E-23 174.2 12.1 163 40-220 219-384 (415)
34 TIGR01984 UbiH 2-polyprenyl-6- 99.7 6.9E-18 1.5E-22 170.0 10.5 182 2-199 164-349 (382)
35 PRK05732 2-octaprenyl-6-methox 99.7 9.3E-18 2E-22 169.7 11.5 200 2-221 171-373 (395)
36 PF00498 FHA: FHA domain; Int 99.7 1.2E-17 2.7E-22 126.6 8.5 67 312-388 1-68 (68)
37 PRK06184 hypothetical protein; 99.7 2.9E-17 6.4E-22 171.8 14.2 148 36-197 203-351 (502)
38 TIGR01988 Ubi-OHases Ubiquinon 99.7 3.2E-17 6.9E-22 165.0 13.6 151 38-199 199-352 (385)
39 PRK08294 phenol 2-monooxygenas 99.7 6.3E-17 1.4E-21 173.1 15.8 149 38-199 249-413 (634)
40 PRK07608 ubiquinone biosynthes 99.7 1.6E-17 3.5E-22 167.7 10.5 170 36-221 201-370 (388)
41 PRK08255 salicylyl-CoA 5-hydro 99.7 2.8E-17 6.1E-22 179.5 10.4 161 47-219 189-358 (765)
42 PF01494 FAD_binding_3: FAD bi 99.7 8.2E-17 1.8E-21 159.1 12.6 140 40-190 214-355 (356)
43 PRK06126 hypothetical protein; 99.7 9.4E-17 2E-21 169.6 13.2 82 110-198 294-375 (545)
44 PRK08132 FAD-dependent oxidore 99.7 6.6E-16 1.4E-20 163.3 17.1 80 112-198 292-371 (547)
45 PRK06834 hypothetical protein; 99.7 2.4E-16 5.3E-21 164.0 12.4 93 113-220 259-351 (488)
46 PRK07190 hypothetical protein; 99.6 2.7E-15 5.8E-20 156.2 16.6 141 39-197 204-346 (487)
47 cd00060 FHA Forkhead associate 99.5 3.2E-13 6.9E-18 110.0 11.9 97 286-397 2-100 (102)
48 TIGR03354 VI_FHA type VI secre 99.5 3.4E-13 7.4E-18 135.8 11.3 85 297-399 15-103 (396)
49 PF08491 SE: Squalene epoxidas 99.3 8.7E-11 1.9E-15 111.5 19.1 154 35-193 45-200 (276)
50 COG1716 FOG: FHA domain [Signa 99.3 1.3E-11 2.8E-16 112.6 9.6 71 309-391 88-158 (191)
51 TIGR02032 GG-red-SF geranylger 99.3 3.2E-11 6.9E-16 116.5 12.9 109 36-153 183-295 (295)
52 KOG1882 Transcriptional regula 99.2 1.6E-11 3.5E-16 111.4 6.6 96 282-390 170-278 (293)
53 smart00240 FHA Forkhead associ 99.2 2.5E-11 5.4E-16 86.6 4.8 49 312-364 1-50 (52)
54 COG3456 Predicted component of 99.2 7.7E-11 1.7E-15 115.8 8.0 79 309-401 25-106 (430)
55 KOG1881 Anion exchanger adapto 98.9 9.6E-10 2.1E-14 113.8 3.0 81 309-400 176-267 (793)
56 TIGR02023 BchP-ChlP geranylger 98.8 1.5E-07 3.3E-12 95.3 17.2 73 112-192 257-329 (388)
57 KOG3855 Monooxygenase involved 98.7 1.7E-08 3.7E-13 99.5 5.5 81 114-198 365-445 (481)
58 TIGR01789 lycopene_cycl lycope 98.6 1.3E-07 2.7E-12 95.4 9.3 65 115-188 246-311 (370)
59 PLN00093 geranylgeranyl diphos 98.6 1.4E-06 3.1E-11 90.1 17.3 79 113-195 303-381 (450)
60 TIGR01790 carotene-cycl lycope 98.6 3E-07 6.5E-12 93.0 11.9 62 116-185 259-320 (388)
61 KOG1880 Nuclear inhibitor of p 98.6 3.8E-08 8.1E-13 92.5 4.3 81 309-399 37-119 (337)
62 PRK11445 putative oxidoreducta 98.4 3E-07 6.5E-12 92.0 6.6 57 116-184 261-317 (351)
63 TIGR02028 ChlP geranylgeranyl 98.4 1.8E-06 4E-11 87.9 10.3 79 113-195 264-342 (398)
64 KOG1298 Squalene monooxygenase 97.8 0.00076 1.7E-08 66.7 14.8 152 35-191 241-394 (509)
65 KOG0615 Serine/threonine prote 97.6 9.9E-05 2.1E-09 73.3 6.3 86 299-399 57-157 (475)
66 COG0644 FixC Dehydrogenases (f 97.4 0.0049 1.1E-07 62.7 15.5 63 116-187 266-328 (396)
67 TIGR02500 type_III_yscD type I 97.3 0.00087 1.9E-08 68.6 9.3 78 297-390 11-89 (410)
68 KOG0245 Kinesin-like protein [ 97.1 0.0015 3.3E-08 71.1 8.0 84 301-400 472-557 (1221)
69 PRK10015 oxidoreductase; Provi 97.0 0.0037 8E-08 64.4 9.7 100 75-181 250-353 (429)
70 KOG2293 Daxx-interacting prote 97.0 0.0023 4.9E-08 65.3 7.5 86 300-400 442-532 (547)
71 TIGR01663 PNK-3'Pase polynucle 96.9 0.0048 1E-07 64.8 9.4 75 299-390 25-101 (526)
72 KOG1892 Actin filament-binding 96.7 0.0039 8.5E-08 67.3 7.0 96 287-398 358-454 (1629)
73 PLN02697 lycopene epsilon cycl 96.5 0.066 1.4E-06 56.6 14.8 65 118-182 371-438 (529)
74 PRK10157 putative oxidoreducta 96.4 0.011 2.4E-07 60.8 8.2 64 114-183 290-355 (428)
75 PF04820 Trp_halogenase: Trypt 95.7 0.12 2.7E-06 53.6 12.1 64 117-190 314-377 (454)
76 PLN02463 lycopene beta cyclase 94.9 0.38 8.2E-06 49.9 12.7 43 117-159 292-334 (447)
77 KOG0241 Kinesin-like protein [ 90.0 0.96 2.1E-05 49.7 7.5 99 284-400 444-543 (1714)
78 PF05834 Lycopene_cycl: Lycope 87.8 2 4.4E-05 43.3 8.0 39 117-155 252-290 (374)
79 PRK11507 ribosome-associated p 54.5 18 0.00039 27.3 3.4 28 357-390 37-64 (70)
80 PF13275 S4_2: S4 domain; PDB: 54.2 10 0.00022 28.2 2.0 28 357-390 33-60 (65)
81 COG2501 S4-like RNA binding pr 48.6 32 0.00069 26.2 3.9 29 356-390 36-64 (73)
82 COG5131 URM1 Ubiquitin-like pr 39.6 29 0.00063 27.4 2.6 43 345-390 48-92 (96)
83 PF10819 DUF2564: Protein of u 38.6 45 0.00097 25.7 3.4 32 124-155 19-51 (79)
84 COG1188 Ribosome-associated he 35.9 59 0.0013 26.3 3.9 34 359-400 36-69 (100)
85 KOG3842 Adaptor protein Pellin 35.1 87 0.0019 30.7 5.5 33 309-344 108-155 (429)
86 cd01764 Urm1 Urm1-like ubuitin 32.5 37 0.00079 27.1 2.3 28 359-389 62-89 (94)
87 PF04710 Pellino: Pellino; In 32.3 1.5E+02 0.0032 30.2 6.8 53 308-363 94-166 (416)
88 PRK01777 hypothetical protein; 31.9 39 0.00085 27.1 2.3 29 355-390 48-76 (95)
89 PRK15367 type III secretion sy 31.6 1.5E+02 0.0032 30.2 6.8 73 297-390 15-87 (395)
90 TIGR02988 YaaA_near_RecF S4 do 30.0 43 0.00092 23.9 2.1 25 357-387 34-58 (59)
91 PF01479 S4: S4 domain; Inter 29.8 34 0.00074 23.1 1.5 24 356-385 25-48 (48)
92 smart00363 S4 S4 RNA-binding d 27.9 71 0.0015 21.6 3.0 27 356-389 25-52 (60)
93 cd00754 MoaD Ubiquitin domain 26.4 56 0.0012 24.5 2.3 26 357-389 50-75 (80)
94 TIGR01687 moaD_arch MoaD famil 23.6 60 0.0013 25.1 2.0 26 359-389 58-83 (88)
95 PF02626 AHS2: Allophanate hyd 23.4 1.2E+02 0.0025 29.3 4.4 32 354-390 52-83 (271)
96 PF14478 DUF4430: Domain of un 22.3 57 0.0012 24.1 1.6 12 376-387 56-67 (68)
97 COG1984 DUR1 Allophanate hydro 22.2 2E+02 0.0044 28.3 5.7 47 339-391 59-105 (314)
98 PRK06488 sulfur carrier protei 22.1 54 0.0012 23.9 1.4 13 376-388 47-59 (65)
99 smart00797 AHS2 Allophanate hy 21.9 2E+02 0.0042 27.9 5.6 32 354-390 52-83 (280)
100 PRK06437 hypothetical protein; 21.4 91 0.002 23.0 2.5 22 359-387 39-60 (67)
101 PRK06944 sulfur carrier protei 20.3 72 0.0016 23.0 1.8 12 376-387 47-58 (65)
No 1
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=2e-67 Score=554.04 Aligned_cols=418 Identities=72% Similarity=1.269 Sum_probs=370.2
Q ss_pred CccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHH
Q 014684 1 MVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLL 80 (420)
Q Consensus 1 ~VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (420)
+||+.+++..++.|+|+++|+|+++..+..........|.|++.+++.+|..+++++|+++...+.......+..+++++
T Consensus 249 ~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~ 328 (668)
T PLN02927 249 KVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLF 328 (668)
T ss_pred HHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHH
Confidence 47899999888899999999999876544333334456789999999999988888888776555332233556788999
Q ss_pred HHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhcc
Q 014684 81 KIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKS 160 (420)
Q Consensus 81 ~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~ 160 (420)
+.|.+|++.+.++++.++.+.+..|+++++.+..+|+.|||+|+|||||+|+|+.|||+|+|||||.+|+++|....+..
T Consensus 329 ~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~ 408 (668)
T PLN02927 329 EIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQS 408 (668)
T ss_pred HHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999888765678899999888889999999999999999999999999999999999999998764321
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhcCCCChhhhhhhccCCCCCcccchhhhhhhhhhHH
Q 014684 161 NESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLML 240 (420)
Q Consensus 161 ~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 240 (420)
...+...+++++|+.|+++|++|+..++..++....+...++.+++.+++|+.+++.+.+++|++..++++.+..||.|+
T Consensus 409 ~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (668)
T PLN02927 409 VETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRFFVDIAMPLML 488 (668)
T ss_pred cccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCCCceeeeeeeecccHHHh
Confidence 11122346899999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCCCCccccCcccccchhhhhccchHHHHhcCCeEEEEEcCCCCcccccEEEeecCCCCcEEEcCCCCC
Q 014684 241 SWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHE 320 (420)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ale~~~~~~w~l~~~~~~~~~~~~~~l~~~~~~~~~~IGR~~~~ 320 (420)
.|+.+.+.+.++|+...|++.||.+..+..|+++++++|+++.++|+|+|.++.+...+.|+|. ++++.+++|||.+..
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~l~-~~~~~p~~iG~~~~~ 567 (668)
T PLN02927 489 DWVLGGNSEKLEGRPPSCRLTDKADDRLREWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLT-KDEDQPCIVGSEPDQ 567 (668)
T ss_pred hhhhcCCccccCCCCCccccccchhHHHHHHhcccHHHHHhhcCCeEEEecCCCCcccceeeee-cCCCCCeEecCCCCc
Confidence 9999999999999999999999999999999999999999999999999999888777889998 888999999999996
Q ss_pred CCCcceEEeCCCcccccceEEEEECCEEEEEEcCCCccceecCCCCceEeecCCCcEEeCCCCEEEECCCceeEEEEEEe
Q 014684 321 DFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 400 (420)
Q Consensus 321 ~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~~~~~~~~~~~ 400 (420)
+.++..|+|++++||+.||+|.++++.|+|+||+|+||||||+++|+++++.|+.+..|++||+|+||+.+...|++++.
T Consensus 568 ~~~~~~i~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~~g~~~~~~fr~~~~ 647 (668)
T PLN02927 568 DFPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKVI 647 (668)
T ss_pred CCCCceEEecCCccChhHeEEEEECCEEEEEECCCCCccEEeCCCCceEecCCCCceEeCCCCEEEeCCCcceeEEEEee
Confidence 66666679999999999999999999999999999999999999999899999999999999999999988889999999
Q ss_pred cCCCCCCcccccc--ccccccC
Q 014684 401 GTPPNNNSERKEA--GEILQAV 420 (420)
Q Consensus 401 ~~~p~~~~~~~~~--~~~~~~~ 420 (420)
..+|..+ +++|. .++||+|
T Consensus 648 ~~~~~~~-~~~~~~~~~~~~~~ 668 (668)
T PLN02927 648 RKTPKST-RKNESNNDKLLQTA 668 (668)
T ss_pred cCCCcch-hhcccchhhhhhcC
Confidence 9999887 55554 5899876
No 2
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.95 E-value=1.3e-26 Score=236.39 Aligned_cols=191 Identities=25% Similarity=0.388 Sum_probs=147.5
Q ss_pred CccCcccC-----CCCcccceEEEEEEEeCCC--CCC-----cC---CcceEEEEcCCeEEEEEeCCCCeE-EEEEEEeC
Q 014684 1 MVRKNLFG-----PQEAIYSGYTCYTGIADFV--PAD-----IE---SVGYRVFLGHKQYFVSSDVGAGKM-QWYAFHKE 64 (420)
Q Consensus 1 ~VR~~l~g-----~~~~~~sG~~~~rg~~~~~--p~~-----~~---~~~~~~~~g~~~~~~~~p~~~g~~-~~~~~~~~ 64 (420)
+||+.+++ +..|.|+|+++|+|+++.. +.. .. .....+|++++++++.||+.+|+. +|+++...
T Consensus 160 ~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~ 239 (414)
T TIGR03219 160 ALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAFISD 239 (414)
T ss_pred HHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCCCcEEEEEEEEcC
Confidence 37888874 2347899999999986431 100 00 112357889999999999999885 45555433
Q ss_pred CC--------CCCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCcc
Q 014684 65 PA--------GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLG 136 (420)
Q Consensus 65 ~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~G 136 (420)
+. ...+.....++++.+.|.+|++.+.++++.++. ...|.+++..++++|+.|||+|||||||+|+|+.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~G 317 (414)
T TIGR03219 240 RSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPA--PTLWALHDLAELPGYVHGRVALIGDAAHAMLPHQG 317 (414)
T ss_pred cccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCC--CCceeeeecccccceeeCcEEEEEcccCCCCCCcC
Confidence 21 111234456888999999999999999988763 35678888877889999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 014684 137 QGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 199 (420)
Q Consensus 137 qG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~ 199 (420)
||+|+|||||++|+++|..... ...+++.+|+.|+++|++|++.+++.|+....+.+
T Consensus 318 qGa~~AieDA~~La~~L~~~~~------~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~ 374 (414)
T TIGR03219 318 AGAGQGLEDAYFLARLLGDTEL------EAGDLPALLEAYDDVRRPRACRVQRTSREAGELYE 374 (414)
T ss_pred cchHhHHHHHHHHHHHHHhhcc------CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999986421 13578999999999999999999999998776654
No 3
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.94 E-value=4.8e-26 Score=231.26 Aligned_cols=199 Identities=25% Similarity=0.353 Sum_probs=148.4
Q ss_pred CccCcccCCCCcccceEEEEEEEeCC--CCCC-----cCCcceEEEEcCCeEEEEEeCCCCeEEEEEEEeCC-C-CCCCC
Q 014684 1 MVRKNLFGPQEAIYSGYTCYTGIADF--VPAD-----IESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP-A-GGVDG 71 (420)
Q Consensus 1 ~VR~~l~g~~~~~~sG~~~~rg~~~~--~p~~-----~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~-~-~~~~~ 71 (420)
+||+++.. .++.|+|+++|+++++. ++.. ........|++++++++.||+.++..++++....+ . ...+.
T Consensus 168 ~vR~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 246 (400)
T PRK06475 168 MLRAKAGF-SKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVWS 246 (400)
T ss_pred hHHhhcCC-CCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCcccCC
Confidence 47888733 56789999999998643 2211 11223467889999999999998876554432222 1 12233
Q ss_pred CcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHH
Q 014684 72 PEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAV 151 (420)
Q Consensus 72 ~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~ 151 (420)
....++++.+.|.+|.+.+.++++.++ .+..|++++..+.+.|..|||+|||||||+|+|+.|||+|+|||||.+|++
T Consensus 247 ~~~~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~ 324 (400)
T PRK06475 247 KTGDKAHLKSIYADWNKPVLQILAAID--EWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAE 324 (400)
T ss_pred CCCCHHHHHHHhcCCChHHHHHHhcCC--ceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHH
Confidence 445678999999999999999998775 356789988776555678999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 152 ELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 152 ~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
+|.. .++..+|+.|++.|++|++.++..++....... ..+|.+..|+..+.
T Consensus 325 ~L~~-----------~~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~--------~~~~~~~~r~~~~~ 375 (400)
T PRK06475 325 ALDS-----------DDQSAGLKRFDSVRKERIAAVAKRGQLNRFAYH--------ATGIFALGRNMLFA 375 (400)
T ss_pred HHhc-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHh
Confidence 9953 257799999999999999999988763322211 12566777776554
No 4
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.93 E-value=6.7e-25 Score=222.21 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=158.6
Q ss_pred ccCcccCCCCcccceEEEEEEEeCC--CCCCcCCcceEEEEcCCeEEEEEeCCCCeEE-EEEEEeCCC-CCCCCCcccHH
Q 014684 2 VRKNLFGPQEAIYSGYTCYTGIADF--VPADIESVGYRVFLGHKQYFVSSDVGAGKMQ-WYAFHKEPA-GGVDGPEGKKE 77 (420)
Q Consensus 2 VR~~l~g~~~~~~sG~~~~rg~~~~--~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~~-~~~~~~~~~-~~~~~~~~~~~ 77 (420)
+|+.+++. ++.++|+.+|+++++. .+.........+|.+++++++.+|+.++..+ +++....+. ..+.......+
T Consensus 168 ~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (396)
T PRK08163 168 VRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVKDGSKE 246 (396)
T ss_pred HHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECCCCCcccccCCCCHH
Confidence 67777665 5789999999998653 2222222234577888899999999888754 444433222 22223445678
Q ss_pred HHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhh
Q 014684 78 RLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKAC 157 (420)
Q Consensus 78 ~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~ 157 (420)
++.+.|.+|.+.+.++++... .+..|.+++..++++|+.|||+|+|||||+|+|+.|||+|+||+||.+|+++|...
T Consensus 247 ~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~- 323 (396)
T PRK08163 247 EVLSYFEGIHPRPRQMLDKPT--SWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC- 323 (396)
T ss_pred HHHHHHcCCChHHHHHHhcCC--ceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc-
Confidence 899999999999998887654 34556677777778999999999999999999999999999999999999999752
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhcCCCChhhhhhhccCCCCCcccchhhhhhhhh
Q 014684 158 KKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMP 237 (420)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 237 (420)
..+++.+|+.|+++|++|+..++..++....+++.. ++....|+..+... .+..+...
T Consensus 324 --------~~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~--------~~~~~~r~~~~~~~--~~~~~~~~---- 381 (396)
T PRK08163 324 --------DGDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK--------GVERQVRNLLWKGR--TQEQFYDA---- 381 (396)
T ss_pred --------cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC--------CHHHHHHHHHhhcc--Chhhhhhh----
Confidence 246799999999999999999999988777654321 34556677544422 12222222
Q ss_pred hHHHHHhcccC
Q 014684 238 LMLSWVLGGNS 248 (420)
Q Consensus 238 ~~~~~~~~~~~ 248 (420)
+.|+|.+..
T Consensus 382 --~~~~~~~~~ 390 (396)
T PRK08163 382 --LEWLYGWKE 390 (396)
T ss_pred --cCccccCCc
Confidence 567777655
No 5
>PRK06753 hypothetical protein; Provisional
Probab=99.93 E-value=1.1e-24 Score=218.78 Aligned_cols=202 Identities=27% Similarity=0.386 Sum_probs=154.7
Q ss_pred CccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHH
Q 014684 1 MVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLL 80 (420)
Q Consensus 1 ~VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (420)
+||+++++...+.|+|+.+|+++++..... .......++++++++.++|+.+++++|++....++.........++++.
T Consensus 153 ~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (373)
T PRK06753 153 KVRQSVNADSKVRYQGYTCFRGLIDDIDLK-LPDCAKEYWGTKGRFGIVPLLNNQAYWFITINAKERDPKYSSFGKPHLQ 231 (373)
T ss_pred HHHHHhCCCCCceEcceEEEEEEecccccc-CccceEEEEcCCCEEEEEEcCCCeEEEEEEeccccCCcccccccHHHHH
Confidence 378888776668899999999986432111 1123344567777888999999988887654332221122334577889
Q ss_pred HHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhcc
Q 014684 81 KIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKS 160 (420)
Q Consensus 81 ~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~ 160 (420)
+.|++|.+.+.++++......+..+++++..+.++|+.|||+|+|||||+|+|+.|||+|+||+||..|+++|..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~----- 306 (373)
T PRK06753 232 AYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNA----- 306 (373)
T ss_pred HHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhh-----
Confidence 999999999999987765444566778887777899999999999999999999999999999999999999953
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 161 NESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 161 ~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
.+++++|+.|++.|++++..+++.|+....+.+.. ..+...+|+..+.
T Consensus 307 ------~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-------~~~~~~~r~~~l~ 354 (373)
T PRK06753 307 ------YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIE-------SKLLVALRNRVMK 354 (373)
T ss_pred ------ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcC-------CchHHHHHHHHHH
Confidence 25789999999999999999999998877765432 2356677886654
No 6
>PRK07236 hypothetical protein; Provisional
Probab=99.92 E-value=3.3e-24 Score=216.76 Aligned_cols=187 Identities=24% Similarity=0.301 Sum_probs=138.5
Q ss_pred CccCcccCCCCcccceEEEEEEEeCCCC--CCc---CCcceEEEEcCCeEEEEEeCCCC---------eEEEEEEEeCCC
Q 014684 1 MVRKNLFGPQEAIYSGYTCYTGIADFVP--ADI---ESVGYRVFLGHKQYFVSSDVGAG---------KMQWYAFHKEPA 66 (420)
Q Consensus 1 ~VR~~l~g~~~~~~sG~~~~rg~~~~~p--~~~---~~~~~~~~~g~~~~~~~~p~~~g---------~~~~~~~~~~~~ 66 (420)
.||+++++...+.|+|+++|+++++... ... ......+|++++.+++.||++++ ..+|+++.+.+.
T Consensus 155 ~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (386)
T PRK07236 155 TVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPA 234 (386)
T ss_pred hHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCC
Confidence 4788888877789999999999865321 111 11234567788889999998642 345766544322
Q ss_pred CC-------------C-------CCCcccHHHHHHHhcC-CChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEc
Q 014684 67 GG-------------V-------DGPEGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLG 125 (420)
Q Consensus 67 ~~-------------~-------~~~~~~~~~l~~~~~~-~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiG 125 (420)
.. + ...+...+++.+.+.+ |.+.+.++++.++. ...+++++... ++|..|||+|+|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~grv~LiG 311 (386)
T PRK07236 235 GEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQ--PFVQAIFDLEV-PRMAFGRVALLG 311 (386)
T ss_pred ccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcC--chhhhhhcccC-cccccCcEEEEe
Confidence 00 0 0112234556666665 88999999987763 34566776553 789999999999
Q ss_pred ccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 014684 126 DSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 199 (420)
Q Consensus 126 DAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~ 199 (420)
||||+|+|+.|||+|+|||||++|+++|... ..++..+|+.|++.|++|++.++..|+.......
T Consensus 312 DAAH~~~P~~GqG~n~aieDA~~La~~L~~~---------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~ 376 (386)
T PRK07236 312 DAAFVARPHTAAGVAKAAADAVALAEALAAA---------AGDIDAALAAWEAERLAVGAAIVARGRRLGARLQ 376 (386)
T ss_pred cccccCCCcchhhHHHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999764 2347899999999999999999998887665543
No 7
>PRK07538 hypothetical protein; Provisional
Probab=99.91 E-value=2.7e-23 Score=212.01 Aligned_cols=181 Identities=30% Similarity=0.402 Sum_probs=138.1
Q ss_pred CccCcccCCC-CcccceEEEEEEEeCCCCCCcCCcceEEEEc-CCeEEEEEeCCCC-------eEEEEEEEeCCC-----
Q 014684 1 MVRKNLFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLG-HKQYFVSSDVGAG-------KMQWYAFHKEPA----- 66 (420)
Q Consensus 1 ~VR~~l~g~~-~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g-~~~~~~~~p~~~g-------~~~~~~~~~~~~----- 66 (420)
+||++++++. ++.|+|+++|+|+.+..+. ... ....+++ .+.+++.||+.++ .++|++....+.
T Consensus 166 ~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~-~~~-~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~ 243 (413)
T PRK07538 166 AVRAQLYPDEGPPRWNGVMMWRGVTEAPPF-LTG-RSMVMAGHLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPR 243 (413)
T ss_pred HHhhhhcCCCCCCcccceEEEEEeecCccc-cCC-CcEEEEcCCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCc
Confidence 4788888764 6899999999998653221 111 2234454 4678999998763 456776554332
Q ss_pred CCCCCCcccHHHHHHHhcCCChH---HHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHH
Q 014684 67 GGVDGPEGKKERLLKIFEGWCDN---VVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 143 (420)
Q Consensus 67 ~~~~~~~~~~~~l~~~~~~~~~~---~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~ai 143 (420)
...+......+++.+.|.+|.+. +.+++..+. .+..|+++++.++++|+.|||+|+|||||+|+|+.|||+|+||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai 321 (413)
T PRK07538 244 REDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAE--AIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAI 321 (413)
T ss_pred ccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCc--ceeeccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHH
Confidence 11123456678888899988653 667776554 4677899988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014684 144 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 195 (420)
Q Consensus 144 eDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~ 195 (420)
+||.+|+++|... .+++++|+.|+++|++|+..++..++...
T Consensus 322 ~Da~~La~~L~~~----------~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~ 363 (413)
T PRK07538 322 LDARALADALAAH----------GDPEAALAAYEAERRPATAQIVLANRLNG 363 (413)
T ss_pred HHHHHHHHHHHhc----------CCHHHHHHHHHHHhhHHHHHHHHHhhhcC
Confidence 9999999999763 34789999999999999999998877633
No 8
>PRK06847 hypothetical protein; Provisional
Probab=99.90 E-value=4.4e-23 Score=207.30 Aligned_cols=185 Identities=23% Similarity=0.307 Sum_probs=136.7
Q ss_pred CccCcccCC-CCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHH
Q 014684 1 MVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERL 79 (420)
Q Consensus 1 ~VR~~l~g~-~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l 79 (420)
++|+.+++. ..+.|+|..+|++.++..+ . .....+|++++.++.++|..++.+++++....+...+...+...+.+
T Consensus 164 ~~r~~l~~~~~~~~~~g~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (375)
T PRK06847 164 KVRSLVFPDEPEPEYTGQGVWRAVLPRPA-E--VDRSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNPRIEPDTLAALL 240 (375)
T ss_pred chhhHhcCCCCCceeccceEEEEEecCCC-C--ccceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccccCChHHHHHHH
Confidence 367777665 4678999999998765322 1 12346788888999999998887776654433322222233445677
Q ss_pred HHHhcCCCh-HHHHHHHhcC-ccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhh
Q 014684 80 LKIFEGWCD-NVVDLILATD-EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKAC 157 (420)
Q Consensus 80 ~~~~~~~~~-~~~~li~~~~-~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~ 157 (420)
.+.+..|.+ .+..+++... ...+..++++.....++|..|||+|+|||||+|+|+.|||+|+|||||.+|+++|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~- 319 (375)
T PRK06847 241 RELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH- 319 (375)
T ss_pred HHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC-
Confidence 888888876 4555554332 1234455666655446799999999999999999999999999999999999999752
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 014684 158 KKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMA 198 (420)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~ 198 (420)
.+++++|+.|+++|++|++.+++.|+....+.
T Consensus 320 ---------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~ 351 (375)
T PRK06847 320 ---------DSLEAALQAYYARRWERCRMVVEASARIGRIE 351 (375)
T ss_pred ---------CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 46789999999999999999999988766553
No 9
>PRK07588 hypothetical protein; Provisional
Probab=99.89 E-value=2.2e-22 Score=203.65 Aligned_cols=188 Identities=23% Similarity=0.280 Sum_probs=129.0
Q ss_pred CccCcccCCCC--cccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCC-CCCCCCcccHH
Q 014684 1 MVRKNLFGPQE--AIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA-GGVDGPEGKKE 77 (420)
Q Consensus 1 ~VR~~l~g~~~--~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~-~~~~~~~~~~~ 77 (420)
+||+.+++... +.|.|...++...+.... ........|.+++.+++.+|+.+++.++++....+. ......+...+
T Consensus 159 ~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (391)
T PRK07588 159 HVRRLVFGPERDFEHYLGCKVAACVVDGYRP-RDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPPLTPAEEKQ 237 (391)
T ss_pred cchhhccCCccceEEEcCcEEEEEEcCCCCC-CCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCccccCCHHHHHH
Confidence 47888775432 467777776654321111 112234456678889999999888765544433322 11223445677
Q ss_pred HHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhh
Q 014684 78 RLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKAC 157 (420)
Q Consensus 78 ~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~ 157 (420)
.+.+.|.+|.+....++..........+.......+++|+.|||+|+|||||+|+|+.|||+|+|||||.+|+++|...
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~- 316 (391)
T PRK07588 238 LLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARA- 316 (391)
T ss_pred HHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhc-
Confidence 7888899886655555544332111112222333457899999999999999999999999999999999999999753
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 014684 158 KKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMA 198 (420)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~ 198 (420)
..+++.+|+.|++.|++|+..++..++.+..++
T Consensus 317 --------~~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~ 349 (391)
T PRK07588 317 --------GGDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVF 349 (391)
T ss_pred --------cCCHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 135789999999999999999998888766554
No 10
>PRK05868 hypothetical protein; Validated
Probab=99.88 E-value=4.7e-22 Score=200.24 Aligned_cols=179 Identities=23% Similarity=0.280 Sum_probs=119.2
Q ss_pred CccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEE-EEcCCeEEEEEeCCCCeE-EE-EEEEeCC-CCCCCCCcccH
Q 014684 1 MVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRV-FLGHKQYFVSSDVGAGKM-QW-YAFHKEP-AGGVDGPEGKK 76 (420)
Q Consensus 1 ~VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~-~~g~~~~~~~~p~~~g~~-~~-~~~~~~~-~~~~~~~~~~~ 76 (420)
+||++++++..+...++..++++.. ++.......... +++++.+++.||+.++.. +. +.+.... .......+..+
T Consensus 161 ~vR~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (372)
T PRK05868 161 NVRRLVFGPEEQFVKRLGTHAAIFT-VPNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRIDYRDTEAQF 239 (372)
T ss_pred hHHHHhcCCcccceeecceEEEEEE-cCCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCcccccCChHHHH
Confidence 4789988765444444444554432 222212222334 468888999999987654 32 2232211 11112234567
Q ss_pred HHHHHHhc--CCC-hHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHH
Q 014684 77 ERLLKIFE--GWC-DNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 153 (420)
Q Consensus 77 ~~l~~~~~--~~~-~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L 153 (420)
++|.+.|. +|. +.+.+++...+ . ..++.....++++|++|||+|+|||||+|+|+.|||+|+|||||++||++|
T Consensus 240 ~~l~~~f~~~~w~~~~l~~~~~~~~--~-~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L 316 (372)
T PRK05868 240 AELQRRMAEDGWVRAQLLHYMRSAP--D-FYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGEL 316 (372)
T ss_pred HHHHHHHhhCCCchHHHHhhcccCC--c-eeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHH
Confidence 88999998 575 44555543322 2 223323344568999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 014684 154 EKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 192 (420)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~ 192 (420)
... ..+++++|+.||+.++|++.+.|....
T Consensus 317 ~~~---------~~~~~~al~~ye~~~~~~~~~~q~~~~ 346 (372)
T PRK05868 317 KAA---------GDDYQLGFANYHAEFHGFVERNQWLVS 346 (372)
T ss_pred Hhc---------CCCHHHHHHHHHHHHhHHHHHhhhhhh
Confidence 763 346899999999999998888875443
No 11
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.84 E-value=2.2e-20 Score=189.28 Aligned_cols=184 Identities=13% Similarity=0.076 Sum_probs=120.3
Q ss_pred CccCcccCCCCcccceE--EEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeE-EEEEEEeCCCC-CCCCCcccH
Q 014684 1 MVRKNLFGPQEAIYSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKM-QWYAFHKEPAG-GVDGPEGKK 76 (420)
Q Consensus 1 ~VR~~l~g~~~~~~sG~--~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~-~~~~~~~~~~~-~~~~~~~~~ 76 (420)
+||+++.+...+.|+++ .+|+++....+.. ....+|.+++.++.++|+.++.. .|++..+.... ..+..+...
T Consensus 164 ~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (390)
T TIGR02360 164 VSRASIPAEVLKEFERVYPFGWLGILSETPPV---SHELIYSNHERGFALCSMRSATRSRYYVQVPLTDKVEDWSDDRFW 240 (390)
T ss_pred hhHHhcCcccceeeeccCCcceEEEecCCCCC---CCceEEEeCCCceEEEeccCCCcceEEEEcCCCCChhhCChhHHH
Confidence 47888866555667766 4788875432221 12235667777777888865443 35544332221 111122234
Q ss_pred HHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHh
Q 014684 77 ERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKA 156 (420)
Q Consensus 77 ~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~ 156 (420)
+++.+.| .+.+.+++...+.......++.. ...++|+.|||+|+|||||+|+|+.|||+|+|||||.+|+++|...
T Consensus 241 ~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~ 316 (390)
T TIGR02360 241 AELKRRL---PSEAAERLVTGPSIEKSIAPLRS-FVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEH 316 (390)
T ss_pred HHHHHhc---CchhhhhhccCCccceeeeeHHh-hccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHH
Confidence 4555444 34555454333211112223322 2235799999999999999999999999999999999999999764
Q ss_pred hhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 014684 157 CKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 199 (420)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~ 199 (420)
. ..+++.+|+.|++.|++|+..+++.|+.+..+.+
T Consensus 317 ~--------~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~ 351 (390)
T TIGR02360 317 Y--------QEGSSAGIEGYSARALARVWKAERFSWWMTSLLH 351 (390)
T ss_pred h--------ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1346899999999999999999999988776653
No 12
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.84 E-value=5.6e-21 Score=194.34 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=110.1
Q ss_pred EEEcCCeEEEEEeCCCCe-EE---EEEEEeCCCCC---CCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeeccc
Q 014684 38 VFLGHKQYFVSSDVGAGK-MQ---WYAFHKEPAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDR 110 (420)
Q Consensus 38 ~~~g~~~~~~~~p~~~g~-~~---~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~ 110 (420)
.+++++++++++|++++. .+ +++..+.+... ....+...+++.+.|. +.+.+++... ....|+++.+
T Consensus 204 ~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~---~~~~~~l~~~ 277 (405)
T PRK05714 204 QRFTDDGPLAFLPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFE---GRLGEVLSAD---PRLCVPLRQR 277 (405)
T ss_pred EEcCCCCCeEEeeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHH---HHhCCceecC---CccEEeccee
Confidence 346788899999997542 22 22222111100 0111122333444343 3333333222 2456788776
Q ss_pred CCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 014684 111 TPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGL 190 (420)
Q Consensus 111 ~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~ 190 (420)
. .++|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|......+.+ ....++|+.|+++|++++..++..
T Consensus 278 ~-~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~----~~~~~~L~~Ye~~R~~~~~~~~~~ 352 (405)
T PRK05714 278 H-AKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGER----LADVRVLSRFERRRMPHNLALMAA 352 (405)
T ss_pred e-hhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCC----cccHHHHHHHHHHHHHHHHHHHHH
Confidence 4 58999999999999999999999999999999999999999865321100 122589999999999999999998
Q ss_pred hHHHHHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 191 ARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 191 s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
++...++++.. ..+.+.+|+..+.
T Consensus 353 ~~~~~~~~~~~-------~~~~~~~R~~~l~ 376 (405)
T PRK05714 353 MEGFERLFQAD-------PLPLRWLRNTGLK 376 (405)
T ss_pred HHHHHHHHCCC-------chHHHHHHHHHHH
Confidence 88766654322 2467788886554
No 13
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.83 E-value=2.9e-20 Score=182.22 Aligned_cols=181 Identities=34% Similarity=0.391 Sum_probs=125.9
Q ss_pred CccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCC-----CCCCCccc
Q 014684 1 MVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG-----GVDGPEGK 75 (420)
Q Consensus 1 ~VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~-----~~~~~~~~ 75 (420)
+||+.++..+ |+|+|+.+|||+. +.|..... ...++...+.++...|.+.....++++...+-. ....++..
T Consensus 164 ~Vr~~l~~~~-p~~~~~~ayrg~~-~~~~~~~~-~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l 240 (420)
T KOG2614|consen 164 KVRKWLGFKE-PRYDGSQAYRGLG-FIPNGIPF-GKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKL 240 (420)
T ss_pred HHHHHhcccC-CcceeEEEEeeee-eccCCCCc-ccceecccCCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHH
Confidence 4788887664 9999999999986 44433221 223445556666667776666556555432211 11223444
Q ss_pred HHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCC-ccc---CCCEEEEcccccccCCCccchhhhHHHHHHHHHH
Q 014684 76 KERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIF-TWG---RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAV 151 (420)
Q Consensus 76 ~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~-~w~---~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~ 151 (420)
+....+.+..|...+.++++.+..+.+...++.+++|.+ -|. .++|||+|||||+|.|+.|||+|+||||+.+||+
T Consensus 241 ~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~ 320 (420)
T KOG2614|consen 241 KKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAE 320 (420)
T ss_pred hhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCcccccccchHHHHHHHHH
Confidence 555667788899999999999988778888888887743 343 4779999999999999999999999999999999
Q ss_pred HHHHhhhccCCCC--------ChhhHHHHHHHHHHHHHHHH
Q 014684 152 ELEKACKKSNESK--------TPIDIVSALKSYERARRLRV 184 (420)
Q Consensus 152 ~L~~~~~~~~~~~--------~~~~~~~~l~~y~~~R~~r~ 184 (420)
||.++...-...+ +..-++.+...|...|.-|.
T Consensus 321 ~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~ 361 (420)
T KOG2614|consen 321 CLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRRL 361 (420)
T ss_pred HHHHhccchhccccceecccchhHHHHHHHHHHHHHHHHHH
Confidence 9998754211001 11126778888888884444
No 14
>PRK06996 hypothetical protein; Provisional
Probab=99.83 E-value=1.7e-20 Score=190.52 Aligned_cols=194 Identities=14% Similarity=0.082 Sum_probs=126.5
Q ss_pred ccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCe---EEEEEEEeCCCC---CCCCCccc
Q 014684 2 VRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK---MQWYAFHKEPAG---GVDGPEGK 75 (420)
Q Consensus 2 VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~---~~~~~~~~~~~~---~~~~~~~~ 75 (420)
+|+.+.++..+.+.+..++++.++.... ........+.+.+.++++|++++. ++++++.+.+.. .....+..
T Consensus 177 ~r~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 254 (398)
T PRK06996 177 QKADAGDSARRRDYGQTAIVGTVTVSAP--RPGWAWERFTHEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAF 254 (398)
T ss_pred HHHHcCCCceeeecCCeEEEEEEEccCC--CCCEEEEEecCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHH
Confidence 4666666555566677788776543111 111122245677788888998764 445543322110 11223345
Q ss_pred HHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHH
Q 014684 76 KERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 155 (420)
Q Consensus 76 ~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~ 155 (420)
++.+.+.|.++.+.+. ... ....+++.... .++|..|||+|+|||||+|+|++|||+|+||+||.+|+++|..
T Consensus 255 ~~~l~~~~~~~~~~~~----~~~--~~~~~~l~~~~-~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~ 327 (398)
T PRK06996 255 LAELGAAFGTRMGRFT----RIA--GRHAFPLGLNA-ARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD 327 (398)
T ss_pred HHHHHHHhccccCceE----Eec--ceEEEeeeccc-ccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh
Confidence 5666666665433221 111 12345565333 4689999999999999999999999999999999999999965
Q ss_pred hhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 156 ACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
. .....+|+.|+++|++++..++..++...++++.. ..+...+|+..+.
T Consensus 328 ~----------~~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~-------~~~~~~~R~~~l~ 376 (398)
T PRK06996 328 H----------GATPLALATFAARRALDRRVTIGATDLLPRLFTVD-------SRPLAHLRGAALT 376 (398)
T ss_pred c----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------chHHHHHHhHHHH
Confidence 2 12467899999999999999999998877665432 2346677775554
No 15
>PRK07045 putative monooxygenase; Reviewed
Probab=99.83 E-value=1.6e-19 Score=182.53 Aligned_cols=188 Identities=19% Similarity=0.254 Sum_probs=123.4
Q ss_pred ccCcccCC--CCcccceEEEEEEEeCCCCCCcCCcceEEEEcC-CeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHH
Q 014684 2 VRKNLFGP--QEAIYSGYTCYTGIADFVPADIESVGYRVFLGH-KQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKER 78 (420)
Q Consensus 2 VR~~l~g~--~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~-~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (420)
||+++++. ..+.|.+..++ |.+...+. .. ....+|+++ ++++..+|+.++..+|++..+.++..........++
T Consensus 167 vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (388)
T PRK07045 167 IRDDVLRMPAERVPYATPMAF-GTIALTDS-VR-ECNRLYVDSNQGLAYFYPIGDQATRLVVSFPADEMQGYLADTTRTK 243 (388)
T ss_pred HHHHhhCCCcccCCCCcceeE-EEEeccCC-cc-ccceEEEcCCCceEEEEEcCCCcEEEEEEeccccchhccCCCCHHH
Confidence 67766543 22445555444 33322111 11 122345554 566778999888777776554332222223345667
Q ss_pred HHHHhcCCC-hHHHHHHHhcCcc-ceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHh
Q 014684 79 LLKIFEGWC-DNVVDLILATDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKA 156 (420)
Q Consensus 79 l~~~~~~~~-~~~~~li~~~~~~-~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~ 156 (420)
+.+.+..|. +.+.+.+...... .+..+++.. ...++|+.|||+|+|||||+|+|+.|||+|+||+||.+|+++|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~ 322 (388)
T PRK07045 244 LLARLNEFVGDESADAMAAIGAGTAFPLIPLGR-MNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLH 322 (388)
T ss_pred HHHHHhhhcCccchHHHhccCcccccceeecCc-cccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhh
Confidence 777777764 4555555443321 122234433 3447899999999999999999999999999999999999999875
Q ss_pred hhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 014684 157 CKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 199 (420)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~ 199 (420)
... ..+++++|+.|+++|++++..++..++...+.++
T Consensus 323 ~~~------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~ 359 (388)
T PRK07045 323 LSG------QIALADALERFERIRRPVNEAVISYGHALATTYH 359 (388)
T ss_pred cCC------chhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcc
Confidence 321 2357899999999999999999988887666544
No 16
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.82 E-value=1.8e-20 Score=188.76 Aligned_cols=191 Identities=16% Similarity=0.088 Sum_probs=121.4
Q ss_pred CccCcccCCC-CcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCe-EEEEEEEeCCCCCCCCCcccHHH
Q 014684 1 MVRKNLFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGGVDGPEGKKER 78 (420)
Q Consensus 1 ~VR~~l~g~~-~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (420)
+||++++.+. ...| ..++.+.++.. .........+|.+.+.+.++|++++. ..++|..+.++.. .......++
T Consensus 161 ~vR~~l~~~~~~~~y--~~~~~~~v~~~--~~~~~~~~~~~~~~g~~~~lPl~~~~~~~~vw~~~~~~~~-~~~~~~~~~ 235 (374)
T PRK06617 161 KVRSHYFANEIEKPY--QTALTFNIKHE--KPHENCAMEHFLPLGPFALLPLKDQYASSVIWSTSSDQAA-LIVNLPVEE 235 (374)
T ss_pred hhHHhcCCCcccccC--CeEEEEEEecc--CCCCCEEEEEecCCCCEEEeECCCCCeEEEEEeCCHHHHH-HHHcCCHHH
Confidence 4787776553 2344 45555544321 11122223456666779999999886 4555543211100 001111233
Q ss_pred HHHHhcCC-ChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhh
Q 014684 79 LLKIFEGW-CDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKAC 157 (420)
Q Consensus 79 l~~~~~~~-~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~ 157 (420)
+.+.+... .+.+.+ +. ....+..|+++.. ...+|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|..
T Consensus 236 ~~~~~~~~~~~~~~~-i~--~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~-- 309 (374)
T PRK06617 236 VRFLTQRNAGNSLGK-IT--IDSEISSFPLKAR-IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN-- 309 (374)
T ss_pred HHHHHHHhhchhcCc-ee--eccceeEEEeeee-eccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC--
Confidence 33333221 112221 11 1123567888877 45789999999999999999999999999999999999999831
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 158 KKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
..+|+.|+++|++++..++..+....+++... ..+...+|+..+.
T Consensus 310 ------------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~-------~~~~~~~R~~~l~ 354 (374)
T PRK06617 310 ------------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNY-------SKNLRCLRQIGFK 354 (374)
T ss_pred ------------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-------chHHHHHHHHHHH
Confidence 25899999999999999999888877665433 2456777886554
No 17
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.82 E-value=3e-20 Score=189.06 Aligned_cols=200 Identities=17% Similarity=0.138 Sum_probs=124.4
Q ss_pred ccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeE-EEEEEEeCCCCC---CCCCcccHH
Q 014684 2 VRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKM-QWYAFHKEPAGG---VDGPEGKKE 77 (420)
Q Consensus 2 VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~-~~~~~~~~~~~~---~~~~~~~~~ 77 (420)
||+.+..+......+..++.+.+.... ........+|+++++++++|+.++.. +|++..+..... ....+...+
T Consensus 170 vR~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~g~~~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 247 (405)
T PRK08850 170 LRRQMDIPLTHWDYGHSALVANVRTVD--PHNSVARQIFTPQGPLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNK 247 (405)
T ss_pred hHHHcCCCeeEEeeccEEEEEEEEccC--CCCCEEEEEEcCCCceEEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHH
Confidence 566665443333346667777654321 12223456788889999999987654 555443221100 011112233
Q ss_pred HHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhh
Q 014684 78 RLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKAC 157 (420)
Q Consensus 78 ~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~ 157 (420)
.+.+.|.. .+. .++... ....|++.... .++|..|||+|+|||||+|+|++|||+|+||+||.+|+++|....
T Consensus 248 ~l~~~~~~---~~~-~~~~~~--~~~~~pl~~~~-~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~ 320 (405)
T PRK08850 248 ALTAEFDN---RLG-LCEVVG--ERQAFPLKMRY-ARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALW 320 (405)
T ss_pred HHHHHHhh---hhC-cEEEcc--cccEEecceee-ccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 34333322 111 011111 12345665443 478999999999999999999999999999999999999998764
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 158 KKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
..+. ......+|+.|+++|++++..++..++...+++... ..+...+|+..+.
T Consensus 321 ~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~R~~~l~ 373 (405)
T PRK08850 321 QQGR----DIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGS-------NPAKKLVRGIGMS 373 (405)
T ss_pred hcCC----CcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCC-------chHHHHHHHHHHH
Confidence 3211 112478999999999999999998887766665422 2345667775443
No 18
>PLN02985 squalene monooxygenase
Probab=99.80 E-value=1.5e-18 Score=181.22 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=122.8
Q ss_pred CccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHH
Q 014684 1 MVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLL 80 (420)
Q Consensus 1 ~VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (420)
++|+.+.....+.+++..+|.-. . .. ....+...+|+++++++++||+.+++.++++..+.+.. +.....++.
T Consensus 209 ~vR~~l~~~~~~~~s~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~l~ypi~~~~~~~~~~~~~~~~----~~~~~~~~~ 281 (514)
T PLN02985 209 NLRRSLNDNNAEVLSYQVGYISK-N-CR-LEEPEKLHLIMSKPSFTMLYQISSTDVRCVFEVLPDNI----PSIANGEMS 281 (514)
T ss_pred HHHHHhccCCCcceeEeEEEEEc-c-cc-CCCCCcceEEcCCCceEEEEEeCCCeEEEEEEEeCCCC----CCcChhhHH
Confidence 36777765544566766666421 1 11 11223346788999999999999998777665543321 111122333
Q ss_pred HHhc-----CCChHHHHHHHh-cCc-cceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHH
Q 014684 81 KIFE-----GWCDNVVDLILA-TDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 153 (420)
Q Consensus 81 ~~~~-----~~~~~~~~li~~-~~~-~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L 153 (420)
+.+. .+.+.+++.+.. .++ ..+..++..... ...|..+|++|||||||+|+|+.|||||+|||||.+|+++|
T Consensus 282 ~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~-~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL 360 (514)
T PLN02985 282 TFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMS-ATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLL 360 (514)
T ss_pred HHHHhccccccCHHHHHHHHhhcccccceeecCccccc-ccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHh
Confidence 3332 233455554432 111 123444444332 24677899999999999999999999999999999999999
Q ss_pred HHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 014684 154 EKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMA 198 (420)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~ 198 (420)
...- +.....++.++|+.|++.|++|+..++..|......+
T Consensus 361 ~~~~----~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f 401 (514)
T PLN02985 361 QPLS----NLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVL 401 (514)
T ss_pred hhcc----cccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 7641 0112346789999999999999999999998776665
No 19
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.80 E-value=8.8e-20 Score=184.38 Aligned_cols=166 Identities=14% Similarity=0.104 Sum_probs=112.1
Q ss_pred EEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHHhcCCChHHHHHHHhc-CccceeEeeecccCCCCc
Q 014684 37 RVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILAT-DEEAILRRDIYDRTPIFT 115 (420)
Q Consensus 37 ~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~li~~~-~~~~~~~~~l~~~~~~~~ 115 (420)
..++.+.+.++.+|+++++.+++++...+... .....+.+++.+.+..+.+ +++... .......|++..... ++
T Consensus 202 ~~~~~~~g~~~~~Pl~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~~l~~~~~-~~ 276 (388)
T PRK07494 202 TEFHTEGGPFTQVPLPGRRSSLVWVVRPAEAE-RLLALSDAALSAAIEERMQ---SMLGKLTLEPGRQAWPLSGQVA-HR 276 (388)
T ss_pred EEEeCCCCcEEEEECCCCcEEEEEECCHHHHH-HHHcCCHHHHHHHHHHHHh---hhcCCeEEccCCcEeechHHHH-Hh
Confidence 34566778899999998877766543222100 0112234455554443222 222211 111345677776554 68
Q ss_pred ccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014684 116 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 195 (420)
Q Consensus 116 w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~ 195 (420)
|..|||+|+|||||.++|++|||+|+||+||..|+++|.... ......++|+.|+++|++++..++..+....
T Consensus 277 ~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~-------~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~ 349 (388)
T PRK07494 277 FAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRP-------EDPGSAAVLAAYDRARRPDILSRTASVDLLN 349 (388)
T ss_pred hccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998631 1123578999999999999998887666555
Q ss_pred HHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 196 VMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
+.+... ..+.+.+|++.|.
T Consensus 350 ~~~~~~-------~~~~~~~R~~~l~ 368 (388)
T PRK07494 350 RSLLSD-------FLPVQDLRAAGLH 368 (388)
T ss_pred HHHcCC-------chHHHHHHHHHHH
Confidence 444322 3567788886654
No 20
>PRK08013 oxidoreductase; Provisional
Probab=99.80 E-value=2.6e-19 Score=181.92 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=104.9
Q ss_pred EEEcCCeEEEEEeCCCCe-EEEEEEEeCCCCCCCCCcccHHHHHHHhc-CCChHHHHHHHhcCccceeEeeecccCCCCc
Q 014684 38 VFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGGVDGPEGKKERLLKIFE-GWCDNVVDLILATDEEAILRRDIYDRTPIFT 115 (420)
Q Consensus 38 ~~~g~~~~~~~~p~~~g~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~ 115 (420)
.++.+++.++++|+.++. ..|++..+..... ...+...+++.+.+. .|.+.+... .... ....+++.... .++
T Consensus 204 ~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~--~~~~~~l~~~~-~~~ 278 (400)
T PRK08013 204 QVFHGDGILAFLPLSDPHLCSIVWSLSPEEAQ-RMQQAPEEEFNRALAIAFDNRLGLC-ELES--ERQVFPLTGRY-ARQ 278 (400)
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEcCHHHHH-HHHcCCHHHHHHHHHHHHhHhhCce-EecC--CccEEecceee-ccc
Confidence 345566688889998765 4555433221100 011123344444433 222222111 1111 12345666554 478
Q ss_pred ccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014684 116 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 195 (420)
Q Consensus 116 w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~ 195 (420)
|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|......+.+ .....+|+.|+++|++++..++..++...
T Consensus 279 ~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~----~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~ 354 (400)
T PRK08013 279 FAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKD----IGQHLYLRRYERSRKHSAALMLAGMQGFR 354 (400)
T ss_pred ccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCC----cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875422111 01245899999999999999998877666
Q ss_pred HHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 196 VMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
.++... ..+...+|++.+.
T Consensus 355 ~l~~~~-------~~~~~~~R~~~l~ 373 (400)
T PRK08013 355 DLFAGN-------NPAKKLLRDIGLK 373 (400)
T ss_pred HHHcCC-------chHHHHHHHHHHH
Confidence 655322 1335566665443
No 21
>PTZ00367 squalene epoxidase; Provisional
Probab=99.80 E-value=2.7e-18 Score=180.67 Aligned_cols=195 Identities=17% Similarity=0.118 Sum_probs=126.3
Q ss_pred CccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHH
Q 014684 1 MVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLL 80 (420)
Q Consensus 1 ~VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (420)
+||+.+... .+.+.+...|+|..-........+...+|+++++++++||+++++.++++....+... ......+.+.
T Consensus 220 ~vR~~l~~~-~~~~~~~s~~~g~~~~~~~lp~~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~p--~~~~~~~~l~ 296 (567)
T PTZ00367 220 KFKSRYQHY-TPASENHSHFVGLVLKNVRLPKEQHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTLP--SLEEQSEWLI 296 (567)
T ss_pred HHHHHccCC-CCCcCcceEEEEEEEecccCCCCCeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcCC--ChHHHHHHHH
Confidence 367777543 2455666777775321111112233467899999999999999988765544333211 1112233444
Q ss_pred HHhc-CCChHHHHHH-HhcC-ccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhh
Q 014684 81 KIFE-GWCDNVVDLI-LATD-EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKAC 157 (420)
Q Consensus 81 ~~~~-~~~~~~~~li-~~~~-~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~ 157 (420)
+.+. .+.+.+.+.+ .... ...+..+++...++ .+|..+|++|||||||+|+|++|||+|+||+||.+|+++|....
T Consensus 297 ~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~p~-~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~ 375 (567)
T PTZ00367 297 EDVAPHLPENMRESFIRASKDTKRIRSMPNARYPP-AFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIK 375 (567)
T ss_pred HhhcccCcHHHHHHHHHhhcccCCeEEeeHhhCCC-ccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 4433 3345555543 2222 12355666766654 45788999999999999999999999999999999999997642
Q ss_pred hc-cCCCCChhhHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHH
Q 014684 158 KK-SNESKTPIDIVSALK----SYERARRLRVAVIHGLARSAAVMAS 199 (420)
Q Consensus 158 ~~-~~~~~~~~~~~~~l~----~y~~~R~~r~~~~~~~s~~~~~~~~ 199 (420)
+. +.+.....++..+|+ .|++.|++++..++..|.....++.
T Consensus 376 ~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~ 422 (567)
T PTZ00367 376 SLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFS 422 (567)
T ss_pred cccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence 11 111112235677777 9999999999999998887665543
No 22
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.79 E-value=5.9e-19 Score=178.39 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=104.5
Q ss_pred EEEcCCeEEEEEeCCCCeEEEEEEEeCCCC---CCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCC
Q 014684 38 VFLGHKQYFVSSDVGAGKMQWYAFHKEPAG---GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIF 114 (420)
Q Consensus 38 ~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~ 114 (420)
.++.+.+...++|++++...++++...... .....+...+++.+.|.++...+ ....+..|++. ....+
T Consensus 203 ~~~~~~g~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~l~-~~~~~ 274 (384)
T PRK08849 203 QQFTPSGPRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHFPAELGEI-------KVLQHGSFPLT-RRHAQ 274 (384)
T ss_pred EEeCCCCCEEEeEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHhhhhhCcE-------EeccceEeecc-ccccc
Confidence 345555555668888776555443221110 01122333444554454332221 11123345544 33457
Q ss_pred cccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014684 115 TWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 194 (420)
Q Consensus 115 ~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~ 194 (420)
+|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|... ..+.+++|+.|+++|++++..++..++..
T Consensus 275 ~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~ 345 (384)
T PRK08849 275 QYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---------GVLNDASFARYERRRRPDNLLMQTGMDLF 345 (384)
T ss_pred hhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999642 12458899999999999999998877766
Q ss_pred HHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 195 AVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
.++++.. ..+...+|+..+.
T Consensus 346 ~~~~~~~-------~~~~~~~R~~~l~ 365 (384)
T PRK08849 346 YKTFSNS-------LTPLKFVRNAALK 365 (384)
T ss_pred HHHhcCC-------chHHHHHHHHHHH
Confidence 6554322 2467777886554
No 23
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.78 E-value=3.5e-19 Score=180.30 Aligned_cols=169 Identities=25% Similarity=0.196 Sum_probs=109.0
Q ss_pred cceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCC---CCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeeccc
Q 014684 34 VGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGV---DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDR 110 (420)
Q Consensus 34 ~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~ 110 (420)
.....++.+.+.+.++|++++....+++.......+ ...+...+++.+.+....+ +...........+++...
T Consensus 195 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~pl~~~ 270 (387)
T COG0654 195 GRAGERFTHAGPFALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGERDP----LGRVTLVSSRSAFPLSLR 270 (387)
T ss_pred CeEEEEecCCCceEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCcccc----cceEEEccccccccccch
Confidence 344567888899999999976555555433322111 1112222333333332222 111111122334445433
Q ss_pred CCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 014684 111 TPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGL 190 (420)
Q Consensus 111 ~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~ 190 (420)
.. .+|..|||+|+|||||+|+|++|||+|+||+||.+|+++|....+. ..+ ..+|+.|+++|++++..++..
T Consensus 271 ~a-~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~------~~~-~~~L~~Y~~~R~~~~~~~~~~ 342 (387)
T COG0654 271 VA-ERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRP------GAD-AAALAAYEARRRPRAEAIQKL 342 (387)
T ss_pred hh-hheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhc------Ccc-HHHHHHHHHhhhhHHHHHHHH
Confidence 33 5788999999999999999999999999999999999999987431 122 899999999999999999988
Q ss_pred hHHHHHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 191 ARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 191 s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
+......+... ..+.+.+|+..+.
T Consensus 343 s~~~~~~~~~~-------~~~~~~~r~~~l~ 366 (387)
T COG0654 343 SRALGRLFSAD-------GPFARFLRNLGLR 366 (387)
T ss_pred HHHHhhhhccC-------CcHHHHHHHHHHH
Confidence 87544433222 2445666665444
No 24
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.78 E-value=2.5e-18 Score=174.25 Aligned_cols=184 Identities=15% Similarity=0.072 Sum_probs=109.3
Q ss_pred CccCcccCCCCcccceE--EEEEEEeCCCCCCcCCcceEEEEc-CCeEEEEEeCCCCeEEEEEEEeCCC-CCCCCCcccH
Q 014684 1 MVRKNLFGPQEAIYSGY--TCYTGIADFVPADIESVGYRVFLG-HKQYFVSSDVGAGKMQWYAFHKEPA-GGVDGPEGKK 76 (420)
Q Consensus 1 ~VR~~l~g~~~~~~sG~--~~~rg~~~~~p~~~~~~~~~~~~g-~~~~~~~~p~~~g~~~~~~~~~~~~-~~~~~~~~~~ 76 (420)
+||+++.+.....|.+. .+|+++....+.. ... .+|.. ++++++.++.+++...+++...... ...+..+...
T Consensus 164 ~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (392)
T PRK08243 164 VSRASIPAGALRTFERVYPFGWLGILAEAPPV--SDE-LIYANHERGFALCSMRSPTRSRYYLQCPLDDKVEDWSDERFW 240 (392)
T ss_pred chhhhcCcchhhceecccCceEEEEeCCCCCC--CCc-eEEeeCCCceEEEecCCCCcEEEEEEecCCCCcccCChhHHH
Confidence 47877765433445544 5677664322221 111 22333 4444444444444444444333221 1112223334
Q ss_pred HHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHh
Q 014684 77 ERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKA 156 (420)
Q Consensus 77 ~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~ 156 (420)
+++.+.|.++.. ..++ ..+......+++... ..++|+.|||+|+|||||+|+|+.|||+|+||+||.+|+++|...
T Consensus 241 ~~l~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~-~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~ 316 (392)
T PRK08243 241 DELRRRLPPEDA--ERLV-TGPSIEKSIAPLRSF-VAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEF 316 (392)
T ss_pred HHHHHhcCcccc--cccc-cCccccccceeeeec-eeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHH
Confidence 556666654311 1111 111000111222222 235799999999999999999999999999999999999999876
Q ss_pred hhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 014684 157 CKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 199 (420)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~ 199 (420)
.+ .+.+++|+.|+++|++|+..++..+.....++.
T Consensus 317 ~~--------~~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~ 351 (392)
T PRK08243 317 YR--------EGDTALLDAYSATALRRVWKAERFSWWMTSMLH 351 (392)
T ss_pred hc--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 134789999999999999999998888776654
No 25
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.78 E-value=8.1e-19 Score=177.70 Aligned_cols=166 Identities=15% Similarity=0.101 Sum_probs=111.0
Q ss_pred EEEcCCeEEEEEeCCCCeEEEEEEEeCCCCC---CCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCC
Q 014684 38 VFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIF 114 (420)
Q Consensus 38 ~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~ 114 (420)
.++.++++++++|++++..+|+|..+..... ....+...+++.+.|..+...+. ... ....|+++.. ..+
T Consensus 205 ~~~~~~g~~~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~--~~~~~~l~~~-~~~ 277 (392)
T PRK08773 205 QRFLPTGPLALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVR----VAS--PRTAFPLRRQ-LVQ 277 (392)
T ss_pred EEeCCCCcEEEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeE----ecC--CccEeechhh-hhh
Confidence 3467778899999998887776654322110 01122344556666665543332 111 1235677654 457
Q ss_pred cccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014684 115 TWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 194 (420)
Q Consensus 115 ~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~ 194 (420)
+|+.|||+|+|||||+|+|++|||+|+||+||.+|+++|.+....+.+ .....+|++|+++|++++..+...+...
T Consensus 278 ~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~----~~~~~~l~~y~~~R~~~~~~~~~~~~~l 353 (392)
T PRK08773 278 QYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRAD----WAAPHRLQRWARTRRSDNTVAAYGFDAI 353 (392)
T ss_pred hhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCC----cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999876433211 1235799999999999988676555433
Q ss_pred HHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 195 AVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
.+++ .....+...+|++.+.
T Consensus 354 ~~~f-------~~~~~~~~~~r~~~l~ 373 (392)
T PRK08773 354 NRVF-------SNDEMHLTLLRGSVLG 373 (392)
T ss_pred HHHH-------cCCChHHHHHHHHHHH
Confidence 3332 2233567778876554
No 26
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.77 E-value=3.3e-18 Score=180.38 Aligned_cols=162 Identities=20% Similarity=0.288 Sum_probs=111.5
Q ss_pred eEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeeccc--CCC
Q 014684 36 YRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDR--TPI 113 (420)
Q Consensus 36 ~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~--~~~ 113 (420)
...+++++++++.+|++++...|.+.....+. .......+.+.+.+..|..... ...+.....|.. ...
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~a 280 (538)
T PRK06183 210 TYQYCDPARPYTSVRLPHGRRRWEFMLLPGET--EEQLASPENVWRLLAPWGPTPD-------DAELIRHAVYTFHARVA 280 (538)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEEeCCCCC--hhhcCCHHHHHHHHHhhCCCCc-------ceEEEEEEeeeEccEEh
Confidence 45678899999999999887777544322111 1112345677777776631100 001111222221 223
Q ss_pred CcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 014684 114 FTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 193 (420)
Q Consensus 114 ~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~ 193 (420)
++|..|||+|+|||||.|+|+.|||+|+||+||.+|+++|....++ ...+.+|+.|+++|++++..++..+..
T Consensus 281 ~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g-------~~~~~~L~~Ye~eR~p~~~~~~~~s~~ 353 (538)
T PRK06183 281 DRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRG-------RAGDALLDTYEQERRPHARAMIDLAVR 353 (538)
T ss_pred hhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999876422 235789999999999999999999888
Q ss_pred HHHHHHHhHhhhcCCCChhhhhhhccC
Q 014684 194 AAVMASTYKAYLGVGLGPLSFLTKFRI 220 (420)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~r~~~~ 220 (420)
..+++.... .....+|+..+
T Consensus 354 ~~~~~~~~~-------~~~~~~R~~~l 373 (538)
T PRK06183 354 LGRVICPTD-------RLAAALRDAVL 373 (538)
T ss_pred hhhhccCCC-------HHHHHHHHHHH
Confidence 776653221 23455666443
No 27
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.77 E-value=3.3e-18 Score=175.87 Aligned_cols=107 Identities=27% Similarity=0.344 Sum_probs=82.0
Q ss_pred eEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHH
Q 014684 103 LRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRL 182 (420)
Q Consensus 103 ~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~ 182 (420)
..+++.. ...++|..|||+|+|||||.|+|++|||+|+||+||.+|+++|......+.+ ..-..+|+.|+++|++
T Consensus 318 ~~~~~~~-~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~----~~~~~~L~~Y~~~R~~ 392 (437)
T TIGR01989 318 AAFPLGL-GHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGAD----IGSISSLKPYERERYA 392 (437)
T ss_pred eeEEecc-cchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHH
Confidence 4556633 3347899999999999999999999999999999999999999886432111 1125799999999999
Q ss_pred HHHHHHHhhHHHHHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 183 RVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 183 r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
+++.++..++...+++... ..+...+|+..+.
T Consensus 393 ~~~~v~~~t~~l~~l~~~~-------~~~~~~~R~~~l~ 424 (437)
T TIGR01989 393 KNVVLLGLVDKLHKLYATD-------FPPVVALRTFGLN 424 (437)
T ss_pred HHHHHHHHHHHHHHHHcCC-------ccHHHHHHHHHHH
Confidence 9999999888777665432 2345666765443
No 28
>PRK08244 hypothetical protein; Provisional
Probab=99.77 E-value=4.3e-18 Score=177.63 Aligned_cols=152 Identities=18% Similarity=0.116 Sum_probs=103.1
Q ss_pred eEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCc
Q 014684 36 YRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFT 115 (420)
Q Consensus 36 ~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~ 115 (420)
...+++++++++++|++++..+|++..+...........+.+++.+.+..+.... +.......+..|++..+ ..++
T Consensus 193 ~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~-~a~~ 268 (493)
T PRK08244 193 VLSLCTREGGVMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTD---FGLNDPVWMSRFGNATR-QAER 268 (493)
T ss_pred eeEEEeCCceEEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCC---CCcCCeeEEEeccccee-eHhh
Confidence 3456788889999999988876655432211111122345666666655442211 00111111122333322 2368
Q ss_pred ccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014684 116 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 195 (420)
Q Consensus 116 w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~ 195 (420)
|..|||+|+|||||.++|++|||+|+||+||.+|+++|..++++ ...+.+|+.|+++|+++++.++..+....
T Consensus 269 ~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g-------~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~ 341 (493)
T PRK08244 269 YRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKG-------WAPDWLLDSYHAERHPVGTALLRNTEVQT 341 (493)
T ss_pred hccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcC-------CCCchhhhhhHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999987532 22367899999999999999998776655
Q ss_pred HHH
Q 014684 196 VMA 198 (420)
Q Consensus 196 ~~~ 198 (420)
.++
T Consensus 342 ~~~ 344 (493)
T PRK08244 342 KLF 344 (493)
T ss_pred HHh
Confidence 543
No 29
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.76 E-value=2.7e-18 Score=174.28 Aligned_cols=167 Identities=14% Similarity=0.076 Sum_probs=110.6
Q ss_pred eEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCC---CCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCC
Q 014684 36 YRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTP 112 (420)
Q Consensus 36 ~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~ 112 (420)
...++.+++++.++|+++++.+|++..+..... ........+++.+.|..|.+.+. ... ....|++... .
T Consensus 201 ~~~~~~~~g~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~--~~~~~~~~~~-~ 273 (403)
T PRK07333 201 AEEHFLPAGPFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRFGHRLGELK----VLG--KRRAFPLGLT-L 273 (403)
T ss_pred EEEEeCCCCceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCceE----ecc--CccEeechhh-h
Confidence 345667888888999999987765432211100 01112234455555655533221 111 1233555433 3
Q ss_pred CCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 014684 113 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 192 (420)
Q Consensus 113 ~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~ 192 (420)
.++|+.|||+|+|||||+|+|+.|||+|+||+||.+|+++|......+. ....+++|+.|+++|++++..++..++
T Consensus 274 ~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~----~~~~~~~L~~Ye~~R~~~~~~~~~~~~ 349 (403)
T PRK07333 274 ARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGL----DIGSLDVLERYQRWRRFDTVRMGVTTD 349 (403)
T ss_pred hhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999987643211 123589999999999999999998887
Q ss_pred HHHHHHHHhHhhhcCCCChhhhhhhccC
Q 014684 193 SAAVMASTYKAYLGVGLGPLSFLTKFRI 220 (420)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 220 (420)
...+++... ..+...+|+..+
T Consensus 350 ~~~~~~~~~-------~~~~~~~r~~~~ 370 (403)
T PRK07333 350 VLNRLFSND-------STLLRSVRDIGL 370 (403)
T ss_pred HHHHHHcCC-------chHHHHHHHHHH
Confidence 766554321 234556666444
No 30
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.76 E-value=2.1e-18 Score=174.52 Aligned_cols=166 Identities=15% Similarity=0.057 Sum_probs=105.8
Q ss_pred EEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHH-hcCCChHHHHHHHhcCccceeEeeecccCCCCccc
Q 014684 39 FLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKI-FEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWG 117 (420)
Q Consensus 39 ~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~ 117 (420)
+|.+.+.+.++|+.++..+++++....... .....+.+++.+. ...|.+.+.++.. .....|++.... .++|.
T Consensus 206 ~~~~~g~~~~~p~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~pl~~~~-~~~~~ 279 (391)
T PRK08020 206 QFTPSGPRAFLPLFDNWASLVWYDSPARIR-QLQAMSMAQLQQEIAAHFPARLGAVTP----VAAGAFPLTRRH-ALQYV 279 (391)
T ss_pred EEcCCCCEEEeECCCCcEEEEEECCHHHHH-HHHCCCHHHHHHHHHHHhhhhccceEe----ccccEeecceee-hhhhc
Confidence 344555566789887766665543211100 0011123333322 2233333322211 123456776553 57899
Q ss_pred CCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 014684 118 RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 197 (420)
Q Consensus 118 ~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~ 197 (420)
.|||+|+|||||+|+|+.|||+|+||+||.+|+++|.+....+. ......+|+.|+++|++++..++..+....+.
T Consensus 280 ~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~ 355 (391)
T PRK08020 280 QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGE----AWASEAVLKRYQRRRMADNLLMQSGMDLFYAG 355 (391)
T ss_pred cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987632211 11347899999999999998887665554443
Q ss_pred HHHhHhhhcCCCChhhhhhhccCC
Q 014684 198 ASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
++ ....+.+.+|++.+.
T Consensus 356 ~~-------~~~~~~~~~R~~~l~ 372 (391)
T PRK08020 356 FS-------NNLPPLRFARNLGLM 372 (391)
T ss_pred Hc-------CCchHHHHHHHHHHH
Confidence 32 234578888886655
No 31
>PRK09126 hypothetical protein; Provisional
Probab=99.76 E-value=2.5e-18 Score=173.94 Aligned_cols=200 Identities=16% Similarity=0.097 Sum_probs=124.2
Q ss_pred ccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCC---CCCCCcccHHH
Q 014684 2 VRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG---GVDGPEGKKER 78 (420)
Q Consensus 2 VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~---~~~~~~~~~~~ 78 (420)
||+.+..+......+..++.+.....+. .......|++++.+++++|+.++.++|++..+.+.. .....+...++
T Consensus 169 vr~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (392)
T PRK09126 169 TRRQLGIGADMHDFGRTMLVCRMRHELP--HHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAE 246 (392)
T ss_pred hhHhcCCCccccccCCeEEEEEEeccCC--CCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHH
Confidence 5666643333333344444333322111 122345678888889999999887777654322110 01112223334
Q ss_pred HHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhh
Q 014684 79 LLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACK 158 (420)
Q Consensus 79 l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~ 158 (420)
+.+.|..+...+ ... ..+..|++.... .++|..|||+|+|||||.|+|+.|||+|+||+||..|+++|.....
T Consensus 247 l~~~~~~~~~~~----~~~--~~~~~~~~~~~~-~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~ 319 (392)
T PRK09126 247 VTARFKGRLGAM----RLV--SSRHAYPLVAVY-AHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAAR 319 (392)
T ss_pred HHHHHhhhccCe----EEc--CCCcEeechHHH-HHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHh
Confidence 444444332111 111 123456666544 3689999999999999999999999999999999999999988643
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 159 KSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 159 ~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
.+ .....+++|+.|+++|++++..++..++....++... ..+.+.+|+..+.
T Consensus 320 ~~----~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~r~~~~~ 371 (392)
T PRK09126 320 RG----QDIGAASLLERYERKHRLATRPLYHATNAIAALYTDD-------RPPARLLRRAVLR 371 (392)
T ss_pred cC----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------chHHHHHHHHHHH
Confidence 21 0113478999999999999999999888776655322 1335566665443
No 32
>PRK06185 hypothetical protein; Provisional
Probab=99.76 E-value=1.6e-17 Score=168.93 Aligned_cols=171 Identities=18% Similarity=0.126 Sum_probs=120.2
Q ss_pred EEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHHhcCCChHHHHHHHhcCc-cceeEeeecccCCCCc
Q 014684 37 RVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDE-EAILRRDIYDRTPIFT 115 (420)
Q Consensus 37 ~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~-~~~~~~~l~~~~~~~~ 115 (420)
..++.+++.++++|.. +..++++..+... .....+...+++.+.+..+.|.+.+.+..... .....+++... ...+
T Consensus 204 ~~~~~~~g~~~llP~~-~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~-~~~~ 280 (407)
T PRK06185 204 MGRFGPGQGLIMIDRG-DYWQCGYVIPKGG-YAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVD-RLRR 280 (407)
T ss_pred ceEecCCcEEEEEcCC-CeEEEEEEecCCC-chhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEecc-cccc
Confidence 4467888999999987 6655555443322 11123345566777777766666655543321 22345565543 3468
Q ss_pred ccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014684 116 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 195 (420)
Q Consensus 116 w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~ 195 (420)
|..+|++|+|||||.++|++|||+|+||+||..|+++|.+....+ +....+|+.|+++|++++..++..+....
T Consensus 281 ~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~ 354 (407)
T PRK06185 281 WHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG------RVSDRDLAAVQRRREFPTRVTQALQRRIQ 354 (407)
T ss_pred ccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC------CccHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999865321 12348999999999999999998888777
Q ss_pred HHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 196 VMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
+++.... ...+...+|++.|.
T Consensus 355 ~~~~~~~-----~~~~~~~~R~~~l~ 375 (407)
T PRK06185 355 RRLLAPA-----LAGRGPLGPPLLLR 375 (407)
T ss_pred Hhhcccc-----ccCccccCCchHHH
Confidence 6654321 01456677776655
No 33
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.76 E-value=3.5e-18 Score=174.15 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=107.5
Q ss_pred EcCCeEEEEEeCCCCeEEEEEEEeCCCC---CCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcc
Q 014684 40 LGHKQYFVSSDVGAGKMQWYAFHKEPAG---GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTW 116 (420)
Q Consensus 40 ~g~~~~~~~~p~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w 116 (420)
+.+.+++.++|++++..+|++..+.+.. .....+...+.+.+.|.+|.+.+. ... ....|++.... .++|
T Consensus 219 ~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~--~~~~~~~~~~~-~~~~ 291 (415)
T PRK07364 219 FWPSGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYGDQLGKLE----LLG--DRFLFPVQLMQ-SDRY 291 (415)
T ss_pred ecCCCCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhhcCce----ecC--CCceecchhhh-hhhh
Confidence 3355678889999888776654322110 001122334445555555543321 111 23456665554 4789
Q ss_pred cCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014684 117 GRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAV 196 (420)
Q Consensus 117 ~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~ 196 (420)
+.|||+|+|||||+|+|+.|||+|+||+||.+|+++|......+.+ .....+|+.|++.|++++..++..++....
T Consensus 292 ~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~----~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~ 367 (415)
T PRK07364 292 VQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGED----IGSLAVLKRYERWRKRENWLILGFTDLLDR 367 (415)
T ss_pred cCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCC----cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875322111 112489999999999999999988887666
Q ss_pred HHHHhHhhhcCCCChhhhhhhccC
Q 014684 197 MASTYKAYLGVGLGPLSFLTKFRI 220 (420)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~r~~~~ 220 (420)
++... ..+...+|+..+
T Consensus 368 ~~~~~-------~~~~~~~r~~~~ 384 (415)
T PRK07364 368 LFSNQ-------WWPLVVVRRLGL 384 (415)
T ss_pred HHcCC-------chHHHHHHHHHH
Confidence 55321 123456666443
No 34
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.74 E-value=6.9e-18 Score=170.05 Aligned_cols=182 Identities=16% Similarity=0.056 Sum_probs=114.1
Q ss_pred ccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCC-eEEEEEEEeCCCCC---CCCCcccHH
Q 014684 2 VRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHKEPAGG---VDGPEGKKE 77 (420)
Q Consensus 2 VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g-~~~~~~~~~~~~~~---~~~~~~~~~ 77 (420)
||+.+..+......|..++.+.++..... ......++++++.+.++|+.++ .+++++..+.+... ....+...+
T Consensus 164 vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (382)
T TIGR01984 164 VRELLSIPTEEHDYNQTALIANIRHEQPH--QGCAFERFTPHGPLALLPLKDNYRSSLVWCLPSKQADTIANLPDAEFLA 241 (382)
T ss_pred HHHHcCCCCcccccCCEEEEEEEEecCCC--CCEEEEeeCCCCCeEECcCCCCCCEEEEEECCHHHHHHHHcCCHHHHHH
Confidence 56666544333455566666654321111 1112234566677889999888 55555433221100 011112233
Q ss_pred HHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhh
Q 014684 78 RLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKAC 157 (420)
Q Consensus 78 ~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~ 157 (420)
++.+.| .+.+.++. .. ..+..|++... ..++|..|||+|+|||||+|+|+.|||+|+||+||..|+++|....
T Consensus 242 ~~~~~~---~~~~~~~~-~~--~~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~ 314 (382)
T TIGR01984 242 ELQQAF---GWRLGKIT-QV--GERKTYPLKLR-IAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDAR 314 (382)
T ss_pred HHHHHH---hhhccCeE-Ec--CCccEeecchh-hhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhc
Confidence 333333 22222221 11 12455666654 3468999999999999999999999999999999999999998752
Q ss_pred hccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 014684 158 KKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMAS 199 (420)
Q Consensus 158 ~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~ 199 (420)
. ....+++|+.|+++|++++..++..+....+++.
T Consensus 315 ~-------~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~ 349 (382)
T TIGR01984 315 I-------DLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFS 349 (382)
T ss_pred c-------CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 1234789999999999999999988887666553
No 35
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.74 E-value=9.3e-18 Score=169.75 Aligned_cols=200 Identities=14% Similarity=0.086 Sum_probs=120.0
Q ss_pred ccCcccCCCCcccceEEEEEEEeCCCCCCcCCcceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCC---CCCCCcccHHH
Q 014684 2 VRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG---GVDGPEGKKER 78 (420)
Q Consensus 2 VR~~l~g~~~~~~sG~~~~rg~~~~~p~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~---~~~~~~~~~~~ 78 (420)
||+.+..+....+.+..++.+.++.... ........+.+++.+..+|..+++.+++++.+.+.. .....+...++
T Consensus 171 vr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (395)
T PRK05732 171 LREALGIDWQQHPYEQVAVIANVTTSEA--HQGRAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAE 248 (395)
T ss_pred hHHhhCCCccceecCCEEEEEEEEecCC--CCCEEEEeecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHH
Confidence 5565543333344455666655432111 111112234566678889999998766654322210 01112223334
Q ss_pred HHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhh
Q 014684 79 LLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACK 158 (420)
Q Consensus 79 l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~ 158 (420)
+.+.|. | .+..+. ... ....|++.... .++|..|||+|+|||||+|+|+.|||+|+||+||.+|+++|.....
T Consensus 249 ~~~~~~-~--~~~~~~-~~~--~~~~~~l~~~~-~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~ 321 (395)
T PRK05732 249 LQQAFG-W--RLGRIT-HAG--KRSAYPLALVT-AAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALA 321 (395)
T ss_pred HHHHHH-h--hhccee-ecC--Ccceecccccc-hhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHh
Confidence 444331 2 111111 111 12345555443 3679999999999999999999999999999999999999987543
Q ss_pred ccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 159 KSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 159 ~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
... ....+++|+.|+++|++++..++..++....++... ..+...+|+..+.
T Consensus 322 ~~~----~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~r~~~~~ 373 (395)
T PRK05732 322 RGE----DIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANR-------WAPLVVGRNLGLM 373 (395)
T ss_pred cCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------ChHHHHHHHHHHH
Confidence 211 112368999999999999999998888777665322 2345566665443
No 36
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.73 E-value=1.2e-17 Score=126.58 Aligned_cols=67 Identities=39% Similarity=0.724 Sum_probs=62.3
Q ss_pred EEEcCCCCCCCCcceEEeCCCcccccceEEEEECC-EEEEEEcCCCccceecCCCCceEeecCCCcEEeCCCCEEEEC
Q 014684 312 YLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG-AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 388 (420)
Q Consensus 312 ~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~-~~~i~Dl~S~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G 388 (420)
++|||++. |||+++++.|||.||.|.++++ .|+|+|++|+|||||||. ++.++++++|++||+|.||
T Consensus 1 ~~iGR~~~-----~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~-----~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPD-----CDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQ-----RLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTT-----SSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTE-----EESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCC-----CCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCE-----EcCCCCEEECCCCCEEEcC
Confidence 58999976 9999999999999999999988 999999999999999999 9999999999999999998
No 37
>PRK06184 hypothetical protein; Provisional
Probab=99.73 E-value=2.9e-17 Score=171.75 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=97.0
Q ss_pred eEEEEcCC-eEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCC
Q 014684 36 YRVFLGHK-QYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIF 114 (420)
Q Consensus 36 ~~~~~g~~-~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~ 114 (420)
...|+.+. ++++.+|++++..+++... .+.. .....+.+++.+.+..+..... +..........|.+..+. .+
T Consensus 203 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~-a~ 276 (502)
T PRK06184 203 WHQWPDGDMGMIALCPLPGTDLFQIQAP-LPPG--GEPDLSADGLTALLAERTGRTD--IRLHSVTWASAFRMNARL-AD 276 (502)
T ss_pred eEEccCCCCcEEEEEEccCCCeEEEEEE-cCCC--ccCCCCHHHHHHHHHHhcCCCC--cceeeeeeeeccccceeE-hh
Confidence 34555554 7888999987654333222 2211 1122345566666554422110 000000011122222222 36
Q ss_pred cccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014684 115 TWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 194 (420)
Q Consensus 115 ~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~ 194 (420)
+|..|||+|+|||||.|+|+.|||+|+||+||.+|+++|+.+.++ ..+++|+.|+++|+++++.+++.+...
T Consensus 277 ~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g--------~~~~lL~~Ye~eR~p~~~~~~~~s~~~ 348 (502)
T PRK06184 277 RYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG--------APEALLDTYEEERRPVAAAVLGLSTEL 348 (502)
T ss_pred hhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999886432 347899999999999999999888775
Q ss_pred HHH
Q 014684 195 AVM 197 (420)
Q Consensus 195 ~~~ 197 (420)
...
T Consensus 349 ~~~ 351 (502)
T PRK06184 349 LDA 351 (502)
T ss_pred HHH
Confidence 544
No 38
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.73 E-value=3.2e-17 Score=164.99 Aligned_cols=151 Identities=19% Similarity=0.153 Sum_probs=103.5
Q ss_pred EEEcCCeEEEEEeCCCCeEEEEEEEeCCCC---CCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCC
Q 014684 38 VFLGHKQYFVSSDVGAGKMQWYAFHKEPAG---GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIF 114 (420)
Q Consensus 38 ~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~ 114 (420)
.++.+++++.++|++++..+|++....+.. .....+...+++.+.+..+.+.+ ... ..+..+++.... .+
T Consensus 199 ~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~-~~ 271 (385)
T TIGR01988 199 ERFTPTGPLALLPLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAI----TLV--GERHAFPLSLTH-AK 271 (385)
T ss_pred EEecCCCCEEEeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCce----Eec--cCcceeechhhh-hh
Confidence 456677788899999988776654332110 11112233444444444332211 111 124456665543 36
Q ss_pred cccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 014684 115 TWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 194 (420)
Q Consensus 115 ~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~ 194 (420)
+|..|||+|+|||||+|+|+.|||+|+||+||.+|+++|......+. ....+.+|+.|+++|+++++.++..++..
T Consensus 272 ~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~~~~~ 347 (385)
T TIGR01988 272 RYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGE----DIGSPRVLQRYERRRRFDNAAMLGATDGL 347 (385)
T ss_pred heecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCC----CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999987643210 01247999999999999999999888877
Q ss_pred HHHHH
Q 014684 195 AVMAS 199 (420)
Q Consensus 195 ~~~~~ 199 (420)
.+++.
T Consensus 348 ~~~~~ 352 (385)
T TIGR01988 348 NRLFS 352 (385)
T ss_pred HHHHc
Confidence 66553
No 39
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.72 E-value=6.3e-17 Score=173.12 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=101.7
Q ss_pred EEEcCCeEEEEEeCCCCeE-EEEEEEeC-C-CCCCCCCcccHHHHHHHhcCCC-hHHHHHHHhcCccceeEeeeccc---
Q 014684 38 VFLGHKQYFVSSDVGAGKM-QWYAFHKE-P-AGGVDGPEGKKERLLKIFEGWC-DNVVDLILATDEEAILRRDIYDR--- 110 (420)
Q Consensus 38 ~~~g~~~~~~~~p~~~g~~-~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~-~~~~~li~~~~~~~~~~~~l~~~--- 110 (420)
++.+++++++.+|+.++.+ ++++.... + ....+..+.+.+++.+.+..+. |...++ ..+..|.+|..
T Consensus 249 ~~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~------~~v~w~s~y~i~~r 322 (634)
T PRK08294 249 IQSASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDV------KEVAWWSVYEVGQR 322 (634)
T ss_pred EecCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCce------eEEeEEecccccce
Confidence 3346788999999998864 44443211 1 1112224456777776655432 111110 12334444431
Q ss_pred C--------CCCc-ccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHH
Q 014684 111 T--------PIFT-WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARR 181 (420)
Q Consensus 111 ~--------~~~~-w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~ 181 (420)
. ...+ |..|||+|+|||||.++|++|||||+||+||++|+|+|..++++ ...+++|+.|+++|+
T Consensus 323 ~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g-------~a~~~lL~tYe~ERr 395 (634)
T PRK08294 323 LTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSG-------RSPPELLHTYSAERQ 395 (634)
T ss_pred ehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHH
Confidence 1 1112 34699999999999999999999999999999999999987532 245789999999999
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 014684 182 LRVAVIHGLARSAAVMAS 199 (420)
Q Consensus 182 ~r~~~~~~~s~~~~~~~~ 199 (420)
++++.+++.++...+++.
T Consensus 396 p~a~~li~~~~~~~~l~~ 413 (634)
T PRK08294 396 AIAQELIDFDREWSTMMA 413 (634)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999888777664
No 40
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.72 E-value=1.6e-17 Score=167.74 Aligned_cols=170 Identities=15% Similarity=0.098 Sum_probs=109.1
Q ss_pred eEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCc
Q 014684 36 YRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFT 115 (420)
Q Consensus 36 ~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~ 115 (420)
...|++++++++++|++++.+.+++....+... .......+++.+.+..+.+.....+.... ....+++... ..+.
T Consensus 201 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~ 276 (388)
T PRK07608 201 AYQWFRDDGILALLPLPDGHVSMVWSARTAHAD-ELLALSPEALAARVERASGGRLGRLECVT--PAAGFPLRLQ-RVDR 276 (388)
T ss_pred EEEEecCCCCEEEeECCCCCeEEEEECCHHHHH-HHHCCCHHHHHHHHHHHHHHhcCCceecC--Ccceeecchh-hhhh
Confidence 456788889999999999976655433211100 00112334455555443222111111111 1223554433 2468
Q ss_pred ccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014684 116 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 195 (420)
Q Consensus 116 w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~ 195 (420)
|+.|||+|+|||||+|+|+.|||+|+||+||.+||++|......+ .....++|+.|+++|+++++.++..++...
T Consensus 277 ~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~-----~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~ 351 (388)
T PRK07608 277 LVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR-----DLGDLRLLRRYERARREDILALQVATDGLQ 351 (388)
T ss_pred hhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998752110 112358999999999999999998887766
Q ss_pred HHHHHhHhhhcCCCChhhhhhhccCC
Q 014684 196 VMASTYKAYLGVGLGPLSFLTKFRIP 221 (420)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~r~~~~~ 221 (420)
.++... ..+...+|+..+.
T Consensus 352 ~~~~~~-------~~~~~~~r~~~~~ 370 (388)
T PRK07608 352 RLFALP-------GPLARWLRNAGMA 370 (388)
T ss_pred HHHcCC-------chHHHHHHHHHHH
Confidence 654322 2345566665443
No 41
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.70 E-value=2.8e-17 Score=179.51 Aligned_cols=161 Identities=24% Similarity=0.290 Sum_probs=115.2
Q ss_pred EEEeCCCCeEEEEEEEeCCC---C--CCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCcccCCC-
Q 014684 47 VSSDVGAGKMQWYAFHKEPA---G--GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR- 120 (420)
Q Consensus 47 ~~~p~~~g~~~~~~~~~~~~---~--~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~~gr- 120 (420)
..||+.++..+|++...... . .....+..++.+.+.|++|.+.. .++..........|.++.....++|+.||
T Consensus 189 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~ 267 (765)
T PRK08255 189 HAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNR 267 (765)
T ss_pred EEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCC
Confidence 45888777766655432210 0 11123456778889999996643 34433322112346677766668999999
Q ss_pred ---EEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 014684 121 ---VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 197 (420)
Q Consensus 121 ---v~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~~ 197 (420)
|+|+|||||+|+|+.|||+|+|||||.+|+++|... ..+++.+|+.|++.|++|++.++..|+....+
T Consensus 268 ~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~---------~~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~ 338 (765)
T PRK08255 268 RVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEH---------PGDLPAALAAYEEERRVEVLRIQNAARNSTEW 338 (765)
T ss_pred cccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHhCce
Confidence 999999999999999999999999999999999764 23689999999999999999999999987766
Q ss_pred HHHhHhhhcCCCChhhhhhhcc
Q 014684 198 ASTYKAYLGVGLGPLSFLTKFR 219 (420)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~r~~~ 219 (420)
........ +.+|.++.+++.
T Consensus 339 ~~~~~~~~--~~~~~~~~~~~~ 358 (765)
T PRK08255 339 FENVERYA--GLEPEQFAYSLL 358 (765)
T ss_pred eeecchhh--CCCHHHHHHHHH
Confidence 65443332 345666666643
No 42
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.70 E-value=8.2e-17 Score=159.14 Aligned_cols=140 Identities=30% Similarity=0.289 Sum_probs=90.5
Q ss_pred EcCCeEEEEEeCCC-CeEEEEEEEeCCCC-CCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccCCCCccc
Q 014684 40 LGHKQYFVSSDVGA-GKMQWYAFHKEPAG-GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWG 117 (420)
Q Consensus 40 ~g~~~~~~~~p~~~-g~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~ 117 (420)
..+...+.++|..+ +...+++....... .........+++.+.+... +...........+..|++.... ..+|.
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 289 (356)
T PF01494_consen 214 SPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEI---FGPDLLETEIDEISAWPIPQRV-ADRWV 289 (356)
T ss_dssp EETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHH---HHTCHHHHEEEEEEEEEEEEEE-ESSSE
T ss_pred cccccceeEeeccCCccceEEEeeecccccccccccccccccccccccc---cccccccccccccccccccccc-ccccc
Confidence 33556667889887 44445554443321 1122333344444433321 1111111111234555555443 36799
Q ss_pred CCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 014684 118 RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGL 190 (420)
Q Consensus 118 ~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~ 190 (420)
.|||+|||||||+|+|+.|||+|+||+||..|+++|.....+ ...+++|+.|+++|++|++.+++.
T Consensus 290 ~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g-------~~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 290 KGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG-------EASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp ETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT-------SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999987431 345789999999999999999864
No 43
>PRK06126 hypothetical protein; Provisional
Probab=99.70 E-value=9.4e-17 Score=169.59 Aligned_cols=82 Identities=33% Similarity=0.326 Sum_probs=70.8
Q ss_pred cCCCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 014684 110 RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHG 189 (420)
Q Consensus 110 ~~~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~ 189 (420)
....++|+.|||+|+|||||.|+|+.|||+|+||+||.+|+++|..+.+. ...+++|+.|+++|+++++.+++
T Consensus 294 ~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~-------~~~~~lL~~Y~~eR~p~~~~~~~ 366 (545)
T PRK06126 294 RLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG-------WAGPALLDSYEAERRPIAARNTD 366 (545)
T ss_pred heehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC-------CCcHHHHhhhHHHhhHHHHHHHH
Confidence 33457899999999999999999999999999999999999999876421 23478999999999999999998
Q ss_pred hhHHHHHHH
Q 014684 190 LARSAAVMA 198 (420)
Q Consensus 190 ~s~~~~~~~ 198 (420)
.+......+
T Consensus 367 ~s~~~~~~~ 375 (545)
T PRK06126 367 YARRNADAL 375 (545)
T ss_pred HHHHHHHHh
Confidence 888765544
No 44
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.68 E-value=6.6e-16 Score=163.26 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=70.2
Q ss_pred CCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 014684 112 PIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 191 (420)
Q Consensus 112 ~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s 191 (420)
..++|+.|||+|+|||||.|+|++|||+|+||+||.+|+++|..++++ ...+++|+.|+++|+++++.++..+
T Consensus 292 ~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g-------~~~~~lL~~Ye~eR~p~~~~~~~~s 364 (547)
T PRK08132 292 RMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRG-------RAPDSLLDSYASEREFAADENIRNS 364 (547)
T ss_pred eecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999999999987532 2358899999999999999999888
Q ss_pred HHHHHHH
Q 014684 192 RSAAVMA 198 (420)
Q Consensus 192 ~~~~~~~ 198 (420)
.....++
T Consensus 365 ~~~~~~~ 371 (547)
T PRK08132 365 TRSTDFI 371 (547)
T ss_pred HHHHhhh
Confidence 7766554
No 45
>PRK06834 hypothetical protein; Provisional
Probab=99.67 E-value=2.4e-16 Score=164.02 Aligned_cols=93 Identities=23% Similarity=0.243 Sum_probs=75.7
Q ss_pred CCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 014684 113 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 192 (420)
Q Consensus 113 ~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~ 192 (420)
.++|..|||+|+|||||.|+|++|||+|+||+||.+|+|+|...++. ...+.+|+.|+++|+++++.++..+.
T Consensus 259 a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g-------~~~~~lLd~Ye~eRrp~~~~~~~~t~ 331 (488)
T PRK06834 259 AASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKG-------TSPESLLDTYHAERHPVAARVLRNTM 331 (488)
T ss_pred cccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999987542 23588999999999999999998776
Q ss_pred HHHHHHHHhHhhhcCCCChhhhhhhccC
Q 014684 193 SAAVMASTYKAYLGVGLGPLSFLTKFRI 220 (420)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 220 (420)
....++. . ......+|+..+
T Consensus 332 ~~~~~~~-~-------~~~~~~lR~~~~ 351 (488)
T PRK06834 332 AQVALLR-P-------DDRTEALRDIVA 351 (488)
T ss_pred HHHHhhc-C-------ChHHHHHHHHHH
Confidence 6554332 1 133556777444
No 46
>PRK07190 hypothetical protein; Provisional
Probab=99.65 E-value=2.7e-15 Score=156.17 Aligned_cols=141 Identities=14% Similarity=0.087 Sum_probs=93.7
Q ss_pred EEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHHhcC-CChHHHHHHHhcCccceeEeeecccCCCCccc
Q 014684 39 FLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFTWG 117 (420)
Q Consensus 39 ~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~li~~~~~~~~~~~~l~~~~~~~~w~ 117 (420)
+..+.+.++.+|..++...+++.. +. .+.+.+++.+.+.. ..+.- +.......+..|++..+.. ++|.
T Consensus 204 ~~~~~g~~~~~p~~~~~~r~~~~~--~~-----~~~t~~~~~~~l~~~~~~~~---~~~~~~~w~s~~~~~~r~a-~~~r 272 (487)
T PRK07190 204 FQAETSDVAWIPREGEIDRFYVRM--DT-----KDFTLEQAIAKINHAMQPHR---LGFKEIVWFSQFSVKESVA-EHFF 272 (487)
T ss_pred EEcCCCCEEEEECCCCEEEEEEEc--CC-----CCCCHHHHHHHHHHhcCCCC---CceEEEEEEEEeeeCcEeh-hhcC
Confidence 445667788889877654444321 11 12233333333322 11110 0011111223455544443 6786
Q ss_pred -CCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 014684 118 -RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAV 196 (420)
Q Consensus 118 -~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~~~~ 196 (420)
.|||+|+|||||.++|++|||||+||+||.+|+|+|..++++ ...+.+|+.|+++|++.++.++..++...+
T Consensus 273 ~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g-------~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~ 345 (487)
T PRK07190 273 IQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHH-------GASPELLQSYEAERKPVAQGVIETSGELVR 345 (487)
T ss_pred cCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999987543 224889999999999999999988876554
Q ss_pred H
Q 014684 197 M 197 (420)
Q Consensus 197 ~ 197 (420)
.
T Consensus 346 ~ 346 (487)
T PRK07190 346 S 346 (487)
T ss_pred h
Confidence 3
No 47
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.49 E-value=3.2e-13 Score=109.97 Aligned_cols=97 Identities=37% Similarity=0.576 Sum_probs=80.3
Q ss_pred EEEEEcCCCCcccccEEEeecCCCCcEEEcCCCCCCCCcc-eEEeCCCcccccceEEEEEC-CEEEEEEcCCCccceecC
Q 014684 286 WFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRT-SIVIPSAQVSKMHARISYKD-GAFYLIDLQSEHGTYVTD 363 (420)
Q Consensus 286 w~l~~~~~~~~~~~~~~l~~~~~~~~~~IGR~~~~~~~~~-~i~~~~~~vSr~Ha~i~~~~-~~~~i~Dl~S~nGt~vng 363 (420)
|.|....+. ...+.+.|. . +..++|||+.. | +|.++++.|||.||.|.++. +.+++.|+.|+||||||+
T Consensus 2 ~~L~~~~~~-~~~~~~~l~-~--~~~~~iGr~~~-----~~~i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~ 72 (102)
T cd00060 2 PRLVVLSGD-ASGRRYYLD-P--GGTYTIGRDSD-----NCDIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNG 72 (102)
T ss_pred eEEEEecCC-CceeEEEEC-C--CCeEEECcCCC-----cCCEEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECC
Confidence 455555443 234788888 2 16699999998 6 99999999999999999997 899999999999999999
Q ss_pred CCCceEeecCCCcEEeCCCCEEEECCCceeEEEE
Q 014684 364 NEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRV 397 (420)
Q Consensus 364 ~~~~~~~l~~~~~~~L~~Gd~i~~G~~~~~~~~~ 397 (420)
. ++..+.+..|.+||.|.||.. ...|++
T Consensus 73 ~-----~~~~~~~~~l~~gd~i~ig~~-~~~~~~ 100 (102)
T cd00060 73 Q-----RVSPGEPVRLRDGDVIRLGNT-SISFRF 100 (102)
T ss_pred E-----ECCCCCcEECCCCCEEEECCe-EEEEEE
Confidence 9 898878999999999999974 234544
No 48
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.45 E-value=3.4e-13 Score=135.85 Aligned_cols=85 Identities=29% Similarity=0.540 Sum_probs=75.5
Q ss_pred ccccEEEeecCCCCcEEEcCCCCCCCCcceEEeCCCc--ccccceEEEEECCEEEEEEcCCCccceec--CCCCceEeec
Q 014684 297 VSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQ--VSKMHARISYKDGAFYLIDLQSEHGTYVT--DNEGRRYRVS 372 (420)
Q Consensus 297 ~~~~~~l~~~~~~~~~~IGR~~~~~~~~~~i~~~~~~--vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vn--g~~~~~~~l~ 372 (420)
....+.+. ....+|||++. |+++++++. ||+.||+|.++++.|+|+|+ |+|||||| |. ++.
T Consensus 15 ~~~~~~f~----~~~~~IGR~~~-----~d~~l~d~~~~VS~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~-----~l~ 79 (396)
T TIGR03354 15 IAAQKTFG----TNGGTIGRSED-----CDWVLPDPERHVSGRHARIRYRDGAYLLTDL-STNGVFLNGSGS-----PLG 79 (396)
T ss_pred cceEEEEC----CCCEEEecCCC-----CCEEeCCCCCCcchhhcEEEEECCEEEEEEC-CCCCeEECCCCC-----CCC
Confidence 33678888 55699999997 999999998 99999999999999999998 99999999 66 888
Q ss_pred CCCcEEeCCCCEEEECCCceeEEEEEE
Q 014684 373 SNFPARFRPSDTIEFGSDKKAIFRVKV 399 (420)
Q Consensus 373 ~~~~~~L~~Gd~i~~G~~~~~~~~~~~ 399 (420)
++.++.|++||+|+||.. .+++.+
T Consensus 80 ~~~~~~L~~GD~I~iG~~---~lrv~~ 103 (396)
T TIGR03354 80 RGNPVRLEQGDRLRLGDY---EIRVSL 103 (396)
T ss_pred CCCceEcCCCCEEEECCE---EEEEEe
Confidence 888899999999999998 555555
No 49
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.34 E-value=8.7e-11 Score=111.55 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=106.4
Q ss_pred ceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHHhc-CCChHHHHHHH-hcCccceeEeeecccCC
Q 014684 35 GYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFE-GWCDNVVDLIL-ATDEEAILRRDIYDRTP 112 (420)
Q Consensus 35 ~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~li~-~~~~~~~~~~~l~~~~~ 112 (420)
--++++++.+.++.|++...++++.+-.+.+.-........++.+++.+. ...+.+++.+. +.++..+...|....++
T Consensus 45 ~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~ 124 (276)
T PF08491_consen 45 HGHVILGKPGPILLYQISSNETRVLVDVPGPKLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPA 124 (276)
T ss_pred ceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCC
Confidence 34678899999999999999988766544331111112233444554443 34555665443 33444555566655655
Q ss_pred CCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 014684 113 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 192 (420)
Q Consensus 113 ~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~ 192 (420)
.+.+. .+++|+|||++.-||..||||+.|+.||..|+++|...- +-.+...+.++++.|..+|++-...|--++.
T Consensus 125 ~~~~~-~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~----dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~ 199 (276)
T PF08491_consen 125 SPNWK-PGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPIP----DLSDTKAVLEALKKFHWKRKPLSSVINILAQ 199 (276)
T ss_pred CCCCC-CCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhhc----CcccHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 44444 569999999999999999999999999999999998751 1123456889999999999999886655444
Q ss_pred H
Q 014684 193 S 193 (420)
Q Consensus 193 ~ 193 (420)
.
T Consensus 200 a 200 (276)
T PF08491_consen 200 A 200 (276)
T ss_pred H
Confidence 3
No 50
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.29 E-value=1.3e-11 Score=112.55 Aligned_cols=71 Identities=28% Similarity=0.461 Sum_probs=64.8
Q ss_pred CCcEEEcCCCCCCCCcceEEeCCCcccccceEEEEECCEEEEEEcCCCccceecCCCCceEeecCCCcEEeCCCCEEEEC
Q 014684 309 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 388 (420)
Q Consensus 309 ~~~~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G 388 (420)
...++|||++. +++++++..|||+||.|.+.++.++++|++|+|||||||. ++.. ...|++||.|.||
T Consensus 88 ~~~~tigr~~~-----~~i~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~-----~v~~--~~~l~~gd~i~i~ 155 (191)
T COG1716 88 EPVTTIGRDPD-----NDIVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGE-----KVRQ--RVLLQDGDVIRLG 155 (191)
T ss_pred cceEEeccCCC-----CCEEcCCCccccceEEEEEeCCceEEEECCCCcceEECCe-----EccC--cEEcCCCCEEEEC
Confidence 34699999776 8899999999999999999999999999999999999999 7764 5899999999999
Q ss_pred CCc
Q 014684 389 SDK 391 (420)
Q Consensus 389 ~~~ 391 (420)
...
T Consensus 156 ~~~ 158 (191)
T COG1716 156 GTL 158 (191)
T ss_pred ccc
Confidence 983
No 51
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.28 E-value=3.2e-11 Score=116.45 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=68.1
Q ss_pred eEEEEc----CCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHHhcCCChHHHHHHHhcCccceeEeeecccC
Q 014684 36 YRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRT 111 (420)
Q Consensus 36 ~~~~~g----~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~~~~l~~~~ 111 (420)
..++++ +++++..+|+.+++..+.+....+. ......+.+.+..+.. +.+ ..........+.+....
T Consensus 183 ~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~-~~l----~~~~~~~~~~~~~~~~~ 253 (295)
T TIGR02032 183 VEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE----EGEDLKKYLKDFLARR-PEL----KDAETVEVIGAPIPIGR 253 (295)
T ss_pred EEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC----CCCCHHHHHHHHHHhC-ccc----ccCcEEeeeceeeccCC
Confidence 345544 3577888999888765544322211 1223333344333322 221 11111112333444444
Q ss_pred CCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHH
Q 014684 112 PIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 153 (420)
Q Consensus 112 ~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L 153 (420)
+..+|..+||+|+|||||.++|+.|||+|+||+||..+|++|
T Consensus 254 ~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 254 PDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred CCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 456889999999999999999999999999999999999874
No 52
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.22 E-value=1.6e-11 Score=111.35 Aligned_cols=96 Identities=29% Similarity=0.463 Sum_probs=77.1
Q ss_pred cCCeEEEEEcCCCCcccccEEEeecCCCCcEEEcCCCCCCCCcceEEeCCCcccccceEEEEE------CC-------EE
Q 014684 282 MNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK------DG-------AF 348 (420)
Q Consensus 282 ~~~~w~l~~~~~~~~~~~~~~l~~~~~~~~~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~------~~-------~~ 348 (420)
+..+|-|.+...... .....|. ...++++||...- +||.+++++.|++||+|++. .+ ..
T Consensus 170 P~kRwrLy~fk~~e~-l~~l~iH---rqs~yL~gRerkI----aDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkp 241 (293)
T KOG1882|consen 170 PKKRWRLYPFKCYEV-LPVLYIH---RQSCYLDGRERKI----ADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKP 241 (293)
T ss_pred chhheecccccCCcc-cchheee---eeeeeecCceeee----eccCCCCccccccceeeeeeecccccCCCccceeeee
Confidence 345688887766543 2455555 2445899996643 88999999999999999874 12 36
Q ss_pred EEEEcCCCccceecCCCCceEeecCCCcEEeCCCCEEEECCC
Q 014684 349 YLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 390 (420)
Q Consensus 349 ~i~Dl~S~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~ 390 (420)
||.||+|.||||||.. +|++...++|..+|+|.||-.
T Consensus 242 YiiDLgS~NgTfLNnk-----~IepqRYyEL~ekDvlkfgfs 278 (293)
T KOG1882|consen 242 YIIDLGSGNGTFLNNK-----VIEPQRYYELREKDVLKFGFS 278 (293)
T ss_pred EEEecCCCCcceecCc-----ccCchheeeeecCceeeeccc
Confidence 9999999999999999 999999999999999999954
No 53
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.19 E-value=2.5e-11 Score=86.62 Aligned_cols=49 Identities=43% Similarity=0.773 Sum_probs=44.3
Q ss_pred EEEcCCCCCCCCcceEEeCCCcccccceEEEEECCE-EEEEEcCCCccceecCC
Q 014684 312 YLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGA-FYLIDLQSEHGTYVTDN 364 (420)
Q Consensus 312 ~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~-~~i~Dl~S~nGt~vng~ 364 (420)
++|||.++. |+++++++.||+.||.|.++.+. |+|+|++|+|||||||+
T Consensus 1 ~~iGr~~~~----~~i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~ 50 (52)
T smart00240 1 VTIGRSSED----CDIQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGK 50 (52)
T ss_pred CEeCCCCCC----CCEEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCE
Confidence 379999932 99999999999999999998665 99999999999999997
No 54
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.15 E-value=7.7e-11 Score=115.75 Aligned_cols=79 Identities=33% Similarity=0.430 Sum_probs=69.9
Q ss_pred CCcEEEcCCCCCCCCcceEEeCCC--cccccceEEEEECCEEEEEEcCCCccceecCCCCceEeecCCCc-EEeCCCCEE
Q 014684 309 NEPYLIGSESHEDFSRTSIVIPSA--QVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP-ARFRPSDTI 385 (420)
Q Consensus 309 ~~~~~IGR~~~~~~~~~~i~~~~~--~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vng~~~~~~~l~~~~~-~~L~~Gd~i 385 (420)
.+..+|||+++ |+..|+|+ .||+.||+|.+.+|.|+|+|. |.|||||||. .+..+.. ..|+.||+|
T Consensus 25 ~~~g~IGrs~d-----cdW~i~D~~~~VS~~Hc~I~~~dg~f~L~Dt-S~g~l~VNgs-----~~~~g~~~~RLqqGd~i 93 (430)
T COG3456 25 RGGGVIGRSPD-----CDWQIDDPERFVSKQHCTISYRDGGFCLTDT-SNGGLLVNGS-----DLPLGEGSARLQQGDEI 93 (430)
T ss_pred cCCcccccCCC-----CCccccCcccccchhheEEEecCCeEEEEec-CCCceeeccc-----ccCCCCCccccccCCEE
Confidence 44599999998 88988666 799999999999999999994 6999999998 7877777 999999999
Q ss_pred EECCCceeEEEEEEec
Q 014684 386 EFGSDKKAIFRVKVIG 401 (420)
Q Consensus 386 ~~G~~~~~~~~~~~~~ 401 (420)
.||+. .|++.+..
T Consensus 94 ~iG~y---~i~V~l~~ 106 (430)
T COG3456 94 LIGRY---IIRVHLSR 106 (430)
T ss_pred eeccE---EEEEEecc
Confidence 99998 78887754
No 55
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.87 E-value=9.6e-10 Score=113.83 Aligned_cols=81 Identities=25% Similarity=0.488 Sum_probs=71.0
Q ss_pred CCcEEEcCCCCCCCCcceEEeCCCcccccceEEEEE--CC---------EEEEEEcCCCccceecCCCCceEeecCCCcE
Q 014684 309 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DG---------AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPA 377 (420)
Q Consensus 309 ~~~~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~---------~~~i~Dl~S~nGt~vng~~~~~~~l~~~~~~ 377 (420)
...++|||... ||+.+.|++|||.||.|++. +- .|+|.|++||+|||+|.. +++|....
T Consensus 176 ~~~~~fgr~~~-----cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~-----rvppk~yi 245 (793)
T KOG1881|consen 176 AAACLFGRLGG-----CDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKD-----RVPPKVYI 245 (793)
T ss_pred ceeEEecccCC-----CccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccc-----cCCCcchh
Confidence 44589999986 99999999999999999885 22 399999999999999999 99999999
Q ss_pred EeCCCCEEEECCCceeEEEEEEe
Q 014684 378 RFRPSDTIEFGSDKKAIFRVKVI 400 (420)
Q Consensus 378 ~L~~Gd~i~~G~~~~~~~~~~~~ 400 (420)
.+..|++++||..++ +|.|+-.
T Consensus 246 r~~Vg~v~~fggsTr-l~i~Qgp 267 (793)
T KOG1881|consen 246 RDRVGHVARFGGSTR-LYIFQGP 267 (793)
T ss_pred hhhHHHHHHhcCceE-EEEeeCC
Confidence 999999999999965 4566654
No 56
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.82 E-value=1.5e-07 Score=95.33 Aligned_cols=73 Identities=25% Similarity=0.384 Sum_probs=59.6
Q ss_pred CCCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 014684 112 PIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 191 (420)
Q Consensus 112 ~~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s 191 (420)
+.++|..++++|+|||||.++|+.|||+++||+++..+|+.+.+.+..+ ..+.|+.|++..+..........
T Consensus 257 ~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~--------~~~~L~~Y~~~~~~~~~~~~~~~ 328 (388)
T TIGR02023 257 PRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG--------DATDLRHYERKFMKLYGTTFRVL 328 (388)
T ss_pred ccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999999999999999998875321 15679999998877665554444
Q ss_pred H
Q 014684 192 R 192 (420)
Q Consensus 192 ~ 192 (420)
+
T Consensus 329 ~ 329 (388)
T TIGR02023 329 R 329 (388)
T ss_pred H
Confidence 3
No 57
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.70 E-value=1.7e-08 Score=99.49 Aligned_cols=81 Identities=27% Similarity=0.336 Sum_probs=67.6
Q ss_pred CcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 014684 114 FTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 193 (420)
Q Consensus 114 ~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~~ 193 (420)
+.+...|++|+|||||-++|.+|||.|+++.|+..|...|+.+...+.+.++ ..-|+.|+++|.+....+......
T Consensus 365 ~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS----~~~L~~y~~~~~~~N~~ll~~vdk 440 (481)
T KOG3855|consen 365 DEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGS----VEHLEPYERERLQHNYVLLGAVDK 440 (481)
T ss_pred HHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccc----hhhhhHHHHHHhhhcchHHHHHHH
Confidence 4688899999999999999999999999999999999999998877655554 577899999998888777655554
Q ss_pred HHHHH
Q 014684 194 AAVMA 198 (420)
Q Consensus 194 ~~~~~ 198 (420)
..++.
T Consensus 441 l~klY 445 (481)
T KOG3855|consen 441 LHKLY 445 (481)
T ss_pred HHHHH
Confidence 44433
No 58
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.62 E-value=1.3e-07 Score=95.45 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=52.7
Q ss_pred cccC-CCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 014684 115 TWGR-GRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIH 188 (420)
Q Consensus 115 ~w~~-grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~ 188 (420)
.|.. ++|+++|||||.++|.+|||++++++||..|++++... ...+.+++..|...|+.|.....
T Consensus 246 ~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 311 (370)
T TIGR01789 246 YQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLS---------SEQLAAFIDSRARRHWSKTGYYR 311 (370)
T ss_pred ccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCcC---------ccchhhhhhHHHHHHHHHhHHHH
Confidence 3554 45999999999999999999999999999999998511 12556778999999888887543
No 59
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.62 E-value=1.4e-06 Score=90.06 Aligned_cols=79 Identities=19% Similarity=0.156 Sum_probs=59.1
Q ss_pred CCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 014684 113 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 192 (420)
Q Consensus 113 ~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~ 192 (420)
.++|..||++|+|||||.++|+.|+|++.||.++..+|+.+.+.++.+... --...|+.|++..+.........+.
T Consensus 303 ~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~----~s~~~L~~Y~~~~~~~~g~~~~~~~ 378 (450)
T PLN00093 303 RPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRM----VDEADLREYLRKWDKKYWPTYKVLD 378 (450)
T ss_pred ccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCc----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999998865432111 1246789999866655544444444
Q ss_pred HHH
Q 014684 193 SAA 195 (420)
Q Consensus 193 ~~~ 195 (420)
...
T Consensus 379 ~l~ 381 (450)
T PLN00093 379 ILQ 381 (450)
T ss_pred HHH
Confidence 333
No 60
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.61 E-value=3e-07 Score=92.96 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=50.7
Q ss_pred ccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHH
Q 014684 116 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 185 (420)
Q Consensus 116 w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~ 185 (420)
+..+||+|+|||||.++|.+|||++.|++++..||+.|.+.... +...+++.|++.-+++..
T Consensus 259 ~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~--------~~~~~~~~~~~~~~~~~~ 320 (388)
T TIGR01790 259 FLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQ--------SSELATAAWDGLWPTERR 320 (388)
T ss_pred ccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhcc--------CHHHHHHHHHHhchHHHH
Confidence 57899999999999999999999999999999999999876421 236788888755444443
No 61
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.59 E-value=3.8e-08 Score=92.49 Aligned_cols=81 Identities=30% Similarity=0.601 Sum_probs=72.0
Q ss_pred CCcEEEcCCCCCCCCcceEEeCCCcccccceEEEEE--CCEEEEEEcCCCccceecCCCCceEeecCCCcEEeCCCCEEE
Q 014684 309 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIE 386 (420)
Q Consensus 309 ~~~~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~Dl~S~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~ 386 (420)
.+.+++||..+. ||.++++.++||.|+.+.+. ...++|.|++|++|||+... +|.+..+..++.|..++
T Consensus 37 kr~y~Fgrn~q~----~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~-----rL~~~~p~~l~i~~~~~ 107 (337)
T KOG1880|consen 37 KRRYLFGRNHQT----CDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNE-----RLEPHKPVQLEIGSTFH 107 (337)
T ss_pred hhhhhhccCCCc----cceEeecchhhhhHhhhhhhhccceEEEEEccCCcceeeeee-----eeccCCCccccCCceEE
Confidence 677999999987 99999999999999999876 66799999999999999988 99999999999999999
Q ss_pred ECCCceeEEEEEE
Q 014684 387 FGSDKKAIFRVKV 399 (420)
Q Consensus 387 ~G~~~~~~~~~~~ 399 (420)
||..++ .|.++.
T Consensus 108 fgasTr-~y~lr~ 119 (337)
T KOG1880|consen 108 FGASTR-IYLLRE 119 (337)
T ss_pred Eeccce-eeeeec
Confidence 999754 344443
No 62
>PRK11445 putative oxidoreductase; Provisional
Probab=98.44 E-value=3e-07 Score=91.97 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=48.2
Q ss_pred ccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHH
Q 014684 116 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 184 (420)
Q Consensus 116 w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~ 184 (420)
+..+||+|||||||.++|+.|||.|+||+|+..|+++|.+. ....|+.|++..+.-.
T Consensus 261 ~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~------------~~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 261 CGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ------------PEKLNTAYWRKTRKLR 317 (351)
T ss_pred cCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc------------ccchHHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999753 2556899998654443
No 63
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.37 E-value=1.8e-06 Score=87.86 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=58.5
Q ss_pred CCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 014684 113 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 192 (420)
Q Consensus 113 ~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s~ 192 (420)
.++|..++++|+|||||.++|..|+|.+.||.++..+|+.+.+.+..+... .-...|+.|++.-+.........+.
T Consensus 264 ~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~----~~~~~l~~Y~~~~~~~~~~~~~~~~ 339 (398)
T TIGR02028 264 RPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAV----TEEGDLAGYLRRWDKEYRPTYRVLD 339 (398)
T ss_pred cccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCc----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999999999999999999998765432110 1256799999865544444443444
Q ss_pred HHH
Q 014684 193 SAA 195 (420)
Q Consensus 193 ~~~ 195 (420)
...
T Consensus 340 ~~~ 342 (398)
T TIGR02028 340 LLQ 342 (398)
T ss_pred HHH
Confidence 333
No 64
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.77 E-value=0.00076 Score=66.66 Aligned_cols=152 Identities=16% Similarity=0.085 Sum_probs=99.8
Q ss_pred ceEEEEcCCeEEEEEeCCCCeEEEEEEEeCCCCCCCCCcccHHHHHHHhc-CCChHHHHHH-HhcCccceeEeeecccCC
Q 014684 35 GYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFE-GWCDNVVDLI-LATDEEAILRRDIYDRTP 112 (420)
Q Consensus 35 ~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~li-~~~~~~~~~~~~l~~~~~ 112 (420)
..++.+++-..++.||+...++..++-.+.+.-........+..+.+... ..++.+++.+ ++.++..+...|-..+++
T Consensus 241 hghvIL~~pspil~Y~ISStEvRcl~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa 320 (509)
T KOG1298|consen 241 HGHVILSKPSPILVYQISSTEVRCLVDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPA 320 (509)
T ss_pred cceEEecCCCcEEEEEecchheEEEEecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCC
Confidence 34677888889999999998888766443322111111122334444433 4456666654 344444433333333333
Q ss_pred CCcccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh
Q 014684 113 IFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 191 (420)
Q Consensus 113 ~~~w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~s 191 (420)
..-....|+|+|||-.-=||..|-||.-|+.|+..|-++|.... +-.+...+-..+..|--.|++....|-.++
T Consensus 321 -~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~----dL~d~ekv~~~i~sFy~~RKp~s~tINtLa 394 (509)
T KOG1298|consen 321 -TLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLP----DLSDAEKVSDYIKSFYWIRKPYSATINTLA 394 (509)
T ss_pred -CcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhcccc----ccccHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 22345679999999999999999999999999999999997632 122345678889999999999766554444
No 65
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=9.9e-05 Score=73.26 Aligned_cols=86 Identities=23% Similarity=0.370 Sum_probs=69.3
Q ss_pred ccEEEeecCCCCcEEEcCCCCCCCCcceEEeCCCcccccceEEEEE---------------CCEEEEEEcCCCccceecC
Q 014684 299 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK---------------DGAFYLIDLQSEHGTYVTD 363 (420)
Q Consensus 299 ~~~~l~~~~~~~~~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~---------------~~~~~i~Dl~S~nGt~vng 363 (420)
..+.+. ...++.||.+. ||..+....+|..|-.|..- ...+++.| .|+||||||.
T Consensus 57 ~~~d~~----nd~f~fGR~~~-----~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~D-hS~nGT~VN~ 126 (475)
T KOG0615|consen 57 KSIDLA----NDEFTFGRGDS-----CDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHD-HSRNGTFVND 126 (475)
T ss_pred ccceec----cceEEecCCCc-----ccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEe-cccCcccccH
Confidence 445556 55599999987 88999888888888877432 35589999 5899999999
Q ss_pred CCCceEeecCCCcEEeCCCCEEEECCCceeEEEEEE
Q 014684 364 NEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 399 (420)
Q Consensus 364 ~~~~~~~l~~~~~~~L~~Gd~i~~G~~~~~~~~~~~ 399 (420)
. .+..+....|++||+|.||.+....|.+.-
T Consensus 127 e-----~i~k~~~r~lkN~dei~is~p~~~~~v~~~ 157 (475)
T KOG0615|consen 127 E-----MIGKGLSRILKNGDEISISIPALKIFVFED 157 (475)
T ss_pred h-----HhhccccccccCCCEEEeccchhheeeeec
Confidence 9 999999999999999999987655566554
No 66
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.39 E-value=0.0049 Score=62.74 Aligned_cols=63 Identities=30% Similarity=0.313 Sum_probs=51.9
Q ss_pred ccCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 014684 116 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVI 187 (420)
Q Consensus 116 w~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~ 187 (420)
++.++++|+||||-..+|+.|.|...||..|..+|+.+.+.... + ...|..|++..+.....-
T Consensus 266 ~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~--------~-~~~l~~Y~~~~~~~~~~~ 328 (396)
T COG0644 266 LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEG--------G-EEALAEYERLLRKSLARE 328 (396)
T ss_pred cccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHc--------C-hhHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999886422 1 567777887766554433
No 67
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.34 E-value=0.00087 Score=68.56 Aligned_cols=78 Identities=8% Similarity=0.150 Sum_probs=61.0
Q ss_pred ccccEEEeecCCCCcEEEc-CCCCCCCCcceEEeCCCcccccceEEEEECCEEEEEEcCCCccceecCCCCceEeecCCC
Q 014684 297 VSQPIYLSVSHENEPYLIG-SESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNF 375 (420)
Q Consensus 297 ~~~~~~l~~~~~~~~~~IG-R~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vng~~~~~~~l~~~~ 375 (420)
.+..+.|. .+.++|| ++++ |||++.|+.||++|+.|.+....+.+.+ +..+.++||. .+....
T Consensus 11 ~G~~~~L~----~g~~~iG~~~~~-----~di~L~d~~~~~~h~~l~v~~~~~~l~~--~~~~~~~~g~-----~~~~~~ 74 (410)
T TIGR02500 11 RGAELPLP----EGNLVLGTDAAD-----CDIVLSDGGIAAVHVSLHVRLEGVTLAG--AVEPAWEEGG-----VLPDEE 74 (410)
T ss_pred CCcEEECC----CCceEeccCCCC-----cEEEeCCCCccchheEEEEcCceEEEec--CCcceeECCc-----ccccCC
Confidence 34889999 5559999 8877 9999999999999999999999998886 5777889983 232233
Q ss_pred cEEeCCCCEEEECCC
Q 014684 376 PARFRPSDTIEFGSD 390 (420)
Q Consensus 376 ~~~L~~Gd~i~~G~~ 390 (420)
...|..+..|..|..
T Consensus 75 g~~l~~~~~l~~g~~ 89 (410)
T TIGR02500 75 GTPLPSGTPLLVAGV 89 (410)
T ss_pred CCccCCCCceeccee
Confidence 445777767766655
No 68
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.08 E-value=0.0015 Score=71.10 Aligned_cols=84 Identities=26% Similarity=0.449 Sum_probs=66.7
Q ss_pred EEEeecCCCCcEEEcCCCCCCCCcceEEeCCCcccccceEEEEECCE--EEEEEcCCCccceecCCCCceEeecCCCcEE
Q 014684 301 IYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGA--FYLIDLQSEHGTYVTDNEGRRYRVSSNFPAR 378 (420)
Q Consensus 301 ~~l~~~~~~~~~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~--~~i~Dl~S~nGt~vng~~~~~~~l~~~~~~~ 378 (420)
+.|. .+...|||.+.. ...||++....|--.||.|+-.++. ++|.-. ----|||||+ ++. ++..
T Consensus 472 Y~ik----eG~TrVG~~~a~--~~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk-----~v~--ep~q 537 (1221)
T KOG0245|consen 472 YYIK----EGETRVGREDAS--SRQDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGK-----LVT--EPTQ 537 (1221)
T ss_pred EEec----cCceecCCCCcc--cCCceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccE-----EcC--Ccce
Confidence 5556 455999999764 3488999999999999999998666 666653 3456999998 776 6889
Q ss_pred eCCCCEEEECCCceeEEEEEEe
Q 014684 379 FRPSDTIEFGSDKKAIFRVKVI 400 (420)
Q Consensus 379 L~~Gd~i~~G~~~~~~~~~~~~ 400 (420)
|+.||+|.+|..+ +|+|.-+
T Consensus 538 L~~GdRiilG~~H--~frfn~P 557 (1221)
T KOG0245|consen 538 LRSGDRIILGGNH--VFRFNHP 557 (1221)
T ss_pred eccCCEEEEcCce--eEEecCH
Confidence 9999999999973 6777644
No 69
>PRK10015 oxidoreductase; Provisional
Probab=96.98 E-value=0.0037 Score=64.40 Aligned_cols=100 Identities=16% Similarity=0.042 Sum_probs=64.1
Q ss_pred cHHHHHHHhcCCChHHHHHHHhcCcccee--EeeecccCCCCcccCCCEEEEcccccccC--CCccchhhhHHHHHHHHH
Q 014684 75 KKERLLKIFEGWCDNVVDLILATDEEAIL--RRDIYDRTPIFTWGRGRVTLLGDSVHAMQ--PNLGQGGCMAIEDGYQLA 150 (420)
Q Consensus 75 ~~~~l~~~~~~~~~~~~~li~~~~~~~~~--~~~l~~~~~~~~w~~grv~LiGDAAH~~~--P~~GqG~~~aieDa~~La 150 (420)
...++.+.|. -+|.+..++......... ..|.......++.+.++++|+||||.-++ |+.|+|+++||..+...|
T Consensus 250 ~~~~~l~~~~-~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AA 328 (429)
T PRK10015 250 SVPQMLEDFK-QHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAA 328 (429)
T ss_pred CHHHHHHHHh-hChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHH
Confidence 4445556664 356677766432210111 11111112235677899999999999998 569999999999999999
Q ss_pred HHHHHhhhccCCCCChhhHHHHHHHHHHHHH
Q 014684 151 VELEKACKKSNESKTPIDIVSALKSYERARR 181 (420)
Q Consensus 151 ~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~ 181 (420)
+.+.+++..+ +-....|+.|++.=+
T Consensus 329 e~i~~a~~~~------d~s~~~l~~Y~~~~~ 353 (429)
T PRK10015 329 TTVIAAKERA------DFSASSLAQYKRELE 353 (429)
T ss_pred HHHHHHHhcC------CCccccHHHHHHHHH
Confidence 9998875421 112456788887643
No 70
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=96.95 E-value=0.0023 Score=65.27 Aligned_cols=86 Identities=17% Similarity=0.321 Sum_probs=70.0
Q ss_pred cEEEeecCCCCcEEEcCCCCCCCCcceEEe----CCCcccccceEEEEE-CCEEEEEEcCCCccceecCCCCceEeecCC
Q 014684 300 PIYLSVSHENEPYLIGSESHEDFSRTSIVI----PSAQVSKMHARISYK-DGAFYLIDLQSEHGTYVTDNEGRRYRVSSN 374 (420)
Q Consensus 300 ~~~l~~~~~~~~~~IGR~~~~~~~~~~i~~----~~~~vSr~Ha~i~~~-~~~~~i~Dl~S~nGt~vng~~~~~~~l~~~ 374 (420)
.+.+. ++.+++||+..... +||-| +..-|||+.+.|+.. +|.|+|+.+| +.-.||||. +|.+|
T Consensus 442 kh~mr----k~EVtlGRat~d~~--VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlG-K~~I~vng~-----~l~~g 509 (547)
T KOG2293|consen 442 KHYMR----KKEVTLGRATGDLK--VDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLG-KRSILVNGG-----ELDRG 509 (547)
T ss_pred Hhhhc----CcceEeeccCCCcc--eeeeccccCccceeeccceeEEeccCCcEEeccCc-ceeEEeCCc-----cccCC
Confidence 45566 55699999997643 44444 344699999999886 8889999987 688999999 99999
Q ss_pred CcEEeCCCCEEEECCCceeEEEEEEe
Q 014684 375 FPARFRPSDTIEFGSDKKAIFRVKVI 400 (420)
Q Consensus 375 ~~~~L~~Gd~i~~G~~~~~~~~~~~~ 400 (420)
+...|+...+|+|-.- .|+|.+-
T Consensus 510 q~~~L~~nclveIrg~---~FiF~~N 532 (547)
T KOG2293|consen 510 QKVILKNNCLVEIRGL---RFIFEIN 532 (547)
T ss_pred ceEEeccCcEEEEccc---eEEEeec
Confidence 9999999999999877 7888764
No 71
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.86 E-value=0.0048 Score=64.77 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=65.7
Q ss_pred ccEEEeecCCCCcEEEcCCCCCCCCcceEEeCCCcccccceEEEEE--CCEEEEEEcCCCccceecCCCCceEeecCCCc
Q 014684 299 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 376 (420)
Q Consensus 299 ~~~~l~~~~~~~~~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~i~Dl~S~nGt~vng~~~~~~~l~~~~~ 376 (420)
..|+|. .+.++|||+++. .|.|...||+...+..+ .+.+.++-|| .|.+-|||. -+.++..
T Consensus 25 ~~~~~~----~~~~~~gr~pet-------~i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~-----~~~~~~~ 87 (526)
T TIGR01663 25 HFIHLD----AGALFLGRGPET-------GIRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGL-----ELKPGGE 87 (526)
T ss_pred CeeccC----CCceEEccCccc-------ccchhhhchhhheeeecccCceEEEEEcc-CCCcccCce-----EecCCCe
Confidence 567777 566999999984 67799999999999876 7778999987 599999999 9999999
Q ss_pred EEeCCCCEEEECCC
Q 014684 377 ARFRPSDTIEFGSD 390 (420)
Q Consensus 377 ~~L~~Gd~i~~G~~ 390 (420)
..|++||.+.+=+.
T Consensus 88 ~~l~~g~~l~~v~~ 101 (526)
T TIGR01663 88 GELGHGDLLEIVNG 101 (526)
T ss_pred eeecCCCEEEEecc
Confidence 99999999999876
No 72
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=96.67 E-value=0.0039 Score=67.33 Aligned_cols=96 Identities=22% Similarity=0.313 Sum_probs=76.0
Q ss_pred EEEEcC-CCCcccccEEEeecCCCCcEEEcCCCCCCCCcceEEeCCCcccccceEEEEECCEEEEEEcCCCccceecCCC
Q 014684 287 FLVPSG-SENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNE 365 (420)
Q Consensus 287 ~l~~~~-~~~~~~~~~~l~~~~~~~~~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vng~~ 365 (420)
+|+... ++..+-+.|.|. ..++-+|.....+ ..|.|..+.|-.+||-|..-+|-++|....----|||||.
T Consensus 358 vLve~s~dG~~s~~ri~L~----~~vtEVGs~~~~~---~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~VnGh- 429 (1629)
T KOG1892|consen 358 VLVELSPDGSDSRKRIRLQ----LSVTEVGSEKLDD---NSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETYVNGH- 429 (1629)
T ss_pred EEEEEcCCCCCcceeEEec----cCceeccccccCC---cceeeeCCCCCccccchhhccceEEecccccchhhhccce-
Confidence 444433 333333778888 6678999988765 5699999999999999999999999998655566999999
Q ss_pred CceEeecCCCcEEeCCCCEEEECCCceeEEEEE
Q 014684 366 GRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVK 398 (420)
Q Consensus 366 ~~~~~l~~~~~~~L~~Gd~i~~G~~~~~~~~~~ 398 (420)
+|. +...|++|+.|+||... .|+|.
T Consensus 430 ----~is--qttiL~~G~~v~fGa~h--sfkF~ 454 (1629)
T KOG1892|consen 430 ----RIS--QTTILQSGMKVQFGASH--SFKFV 454 (1629)
T ss_pred ----ecc--hhhhhccCCEEEeccce--eEEec
Confidence 887 57899999999999874 46654
No 73
>PLN02697 lycopene epsilon cyclase
Probab=96.48 E-value=0.066 Score=56.58 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=50.7
Q ss_pred CCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCC---CChhhHHHHHHHHHHHHHH
Q 014684 118 RGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNES---KTPIDIVSALKSYERARRL 182 (420)
Q Consensus 118 ~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~---~~~~~~~~~l~~y~~~R~~ 182 (420)
..+++++||||..++|.+|.|...++..|..+|+.+.+.+..+... ........+++.|++.-..
T Consensus 371 ~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~ 438 (529)
T PLN02697 371 EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQ 438 (529)
T ss_pred CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChH
Confidence 6789999999999999999999999999999999999987543200 0012457888988775433
No 74
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=96.38 E-value=0.011 Score=60.84 Aligned_cols=64 Identities=19% Similarity=0.035 Sum_probs=50.9
Q ss_pred CcccCCCEEEEcccccccCC--CccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHH
Q 014684 114 FTWGRGRVTLLGDSVHAMQP--NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLR 183 (420)
Q Consensus 114 ~~w~~grv~LiGDAAH~~~P--~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r 183 (420)
++...++++++||||-.++| +.|.|+++||..+...|+.+.+.++.+ +.....|..|++.=+.-
T Consensus 290 ~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~------~~s~~~l~~Y~~~l~~~ 355 (428)
T PRK10157 290 PELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD------DFSKQKLAEYRQHLESG 355 (428)
T ss_pred CceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC------CcchhhHHHHHHHHHHh
Confidence 45677899999999999988 699999999999999999998875431 12356789998764443
No 75
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.69 E-value=0.12 Score=53.60 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=49.2
Q ss_pred cCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhccCCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 014684 117 GRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGL 190 (420)
Q Consensus 117 ~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~~~~~~~~~~~~~~l~~y~~~R~~r~~~~~~~ 190 (420)
..+++++|||||..+.|..++|+.+++..+..|+..|... ..+ +.+++.|++..+...+.+.+.
T Consensus 314 ~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~---------~~~-~~~~~~Yn~~~~~~~~~~~~f 377 (454)
T PF04820_consen 314 WGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD---------DFS-PAALDRYNRRMRREYERIRDF 377 (454)
T ss_dssp EETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT---------TCC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC---------CCC-HHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999888888888642 112 778999999988888777543
No 76
>PLN02463 lycopene beta cyclase
Probab=94.91 E-value=0.38 Score=49.86 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=39.8
Q ss_pred cCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHHhhhc
Q 014684 117 GRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKK 159 (420)
Q Consensus 117 ~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~~~ 159 (420)
..+|++++||||-.++|..|.|..-++..+..+|+.+.+.++.
T Consensus 292 ~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~ 334 (447)
T PLN02463 292 IPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGS 334 (447)
T ss_pred CCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999999988754
No 77
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=90.01 E-value=0.96 Score=49.74 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=68.9
Q ss_pred CeEEEEEcCCCCcccccEEEeecCCCCcEEEcCCCCCCCCcceEEeCCCcccccceEEEEE-CCEEEEEEcCCCccceec
Q 014684 284 GEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK-DGAFYLIDLQSEHGTYVT 362 (420)
Q Consensus 284 ~~w~l~~~~~~~~~~~~~~l~~~~~~~~~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~-~~~~~i~Dl~S~nGt~vn 362 (420)
...|++-.......+.-..+-+ ....+||-... -+|++..-.|-++||.|..+ ++++++..+.+. -+|||
T Consensus 444 DK~ylvnlnadP~lnellvyyl---~~~tlig~~~~-----~~i~l~glgi~p~h~vidI~~dg~l~~~p~~~~-R~~VN 514 (1714)
T KOG0241|consen 444 DKCYLVNLNADPALNELLVYYL---KDHTLIGLFKS-----QDIQLSGLGIQPKHCVIDIESDGELRLTPLLNA-RSCVN 514 (1714)
T ss_pred cceEEEeccCCccHHHHHHHhh---cCceeeccccC-----cceeeecCcccCccceeeeccCCcEEecccccc-eeeec
Confidence 3456665544433222211111 23378886655 77999999999999999887 666888887665 89999
Q ss_pred CCCCceEeecCCCcEEeCCCCEEEECCCceeEEEEEEe
Q 014684 363 DNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 400 (420)
Q Consensus 363 g~~~~~~~l~~~~~~~L~~Gd~i~~G~~~~~~~~~~~~ 400 (420)
|. .+. ++..|.+||.|-.|+.+. |++-+.
T Consensus 515 Gs-----~v~--~~t~L~~GdRiLwGnnHF--FrvN~P 543 (1714)
T KOG0241|consen 515 GS-----LVC--STTQLWHGDRILWGNNHF--FRVNLP 543 (1714)
T ss_pred Cc-----eec--cccccccCceEEecccce--EEecCc
Confidence 98 554 578999999999999843 555443
No 78
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=87.81 E-value=2 Score=43.29 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=35.7
Q ss_pred cCCCEEEEcccccccCCCccchhhhHHHHHHHHHHHHHH
Q 014684 117 GRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEK 155 (420)
Q Consensus 117 ~~grv~LiGDAAH~~~P~~GqG~~~aieDa~~La~~L~~ 155 (420)
..++++.+|+||-.++|..|.++..+++.|..+|+.|..
T Consensus 252 ~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 252 FGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred cCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 356799999999999999999999999999999999875
No 79
>PRK11507 ribosome-associated protein; Provisional
Probab=54.46 E-value=18 Score=27.31 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=21.6
Q ss_pred ccceecCCCCceEeecCCCcEEeCCCCEEEECCC
Q 014684 357 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 390 (420)
Q Consensus 357 nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~ 390 (420)
+...|||. +.-.....|.+||+|.|.+.
T Consensus 37 g~V~VNGe------ve~rRgkKl~~GD~V~~~g~ 64 (70)
T PRK11507 37 GQVKVDGA------VETRKRCKIVAGQTVSFAGH 64 (70)
T ss_pred CceEECCE------EecccCCCCCCCCEEEECCE
Confidence 56888985 33344568999999999987
No 80
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=54.18 E-value=10 Score=28.21 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=16.3
Q ss_pred ccceecCCCCceEeecCCCcEEeCCCCEEEECCC
Q 014684 357 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 390 (420)
Q Consensus 357 nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~ 390 (420)
+..+|||. +.-.....|++||+|.|++.
T Consensus 33 g~V~VNGe------~e~rrg~Kl~~GD~V~~~~~ 60 (65)
T PF13275_consen 33 GEVKVNGE------VETRRGKKLRPGDVVEIDGE 60 (65)
T ss_dssp HHHEETTB----------SS----SSEEEEETTE
T ss_pred CceEECCE------EccccCCcCCCCCEEEECCE
Confidence 56789996 33344578999999999766
No 81
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=48.58 E-value=32 Score=26.19 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=22.8
Q ss_pred CccceecCCCCceEeecCCCcEEeCCCCEEEECCC
Q 014684 356 EHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 390 (420)
Q Consensus 356 ~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~ 390 (420)
.+..+|||. ++-.....|.+||+|.|.+.
T Consensus 36 eg~V~vNGe------~EtRRgkKlr~gd~V~i~~~ 64 (73)
T COG2501 36 EGEVKVNGE------VETRRGKKLRDGDVVEIPGQ 64 (73)
T ss_pred CCeEEECCe------eeeccCCEeecCCEEEECCE
Confidence 367999996 33334578999999999987
No 82
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.64 E-value=29 Score=27.38 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCcc--ceecCCCCceEeecCCCcEEeCCCCEEEECCC
Q 014684 345 DGAFYLIDLQSEHG--TYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 390 (420)
Q Consensus 345 ~~~~~i~Dl~S~nG--t~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~ 390 (420)
...+++.+-.=+.| +.||+. -|++...+.+.|++||.|.|-++
T Consensus 48 ~~sifie~g~lrpGiI~LINd~---DWeLleke~y~ledgDiIvfist 92 (96)
T COG5131 48 RDSIFIEHGELRPGIICLINDM---DWELLEKERYPLEDGDIIVFIST 92 (96)
T ss_pred cceeeecCCCCcccEEEEEcCc---cHhhhhcccccCCCCCEEEEEec
Confidence 56678887555778 456775 34666777899999999988654
No 83
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=38.56 E-value=45 Score=25.65 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.9
Q ss_pred EcccccccCCCccchhhhHHHHHH-HHHHHHHH
Q 014684 124 LGDSVHAMQPNLGQGGCMAIEDGY-QLAVELEK 155 (420)
Q Consensus 124 iGDAAH~~~P~~GqG~~~aieDa~-~La~~L~~ 155 (420)
+|-|-+.|+|..=+.+..||+||. .|....+.
T Consensus 19 vG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~ 51 (79)
T PF10819_consen 19 VGQATMSMDPDQLEHATQAVEDAREQLSQAKSH 51 (79)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688889999999999999999998 56655544
No 84
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=35.88 E-value=59 Score=26.34 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=23.9
Q ss_pred ceecCCCCceEeecCCCcEEeCCCCEEEECCCceeEEEEEEe
Q 014684 359 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 400 (420)
Q Consensus 359 t~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~~~~~~~~~~~ 400 (420)
..|||. +..|. ..++.||+|.|.-... .+.+++.
T Consensus 36 V~vNG~-----~aKpS--~~VK~GD~l~i~~~~~-~~~v~Vl 69 (100)
T COG1188 36 VKVNGQ-----RAKPS--KEVKVGDILTIRFGNK-EFTVKVL 69 (100)
T ss_pred EEECCE-----Ecccc--cccCCCCEEEEEeCCc-EEEEEEE
Confidence 568888 77765 5799999998776532 4555554
No 85
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=35.12 E-value=87 Score=30.68 Aligned_cols=33 Identities=18% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCcEEEcCCCCCCCCcceEEeC---------------CCcccccceEEEEE
Q 014684 309 NEPYLIGSESHEDFSRTSIVIP---------------SAQVSKMHARISYK 344 (420)
Q Consensus 309 ~~~~~IGR~~~~~~~~~~i~~~---------------~~~vSr~Ha~i~~~ 344 (420)
...+-|||+.+.. .|.++. .++|||.-|+|..+
T Consensus 108 tDMFQiGRstes~---IDFvV~DT~~g~~~~~da~v~qSTISRfACRIl~d 155 (429)
T KOG3842|consen 108 TDMFQIGRSTESP---IDFVVTDTWPGSQEHSDAQVRQSTISRFACRILCD 155 (429)
T ss_pred cchhhhccCcCCC---cceEEecccCCCcccccchhhhhhhhhheeeeeec
Confidence 5667799988754 555442 23589999999886
No 86
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=32.49 E-value=37 Score=27.12 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=19.7
Q ss_pred ceecCCCCceEeecCCCcEEeCCCCEEEECC
Q 014684 359 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 389 (420)
Q Consensus 359 t~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~ 389 (420)
.+|||.+ ++...+..++|++||+|.|=.
T Consensus 62 VlvN~~d---i~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 62 VLINDTD---WELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred EEECCcc---ccccCCcccCCCCcCEEEEEC
Confidence 5678762 233356678999999998754
No 87
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=32.33 E-value=1.5e+02 Score=30.17 Aligned_cols=53 Identities=15% Similarity=0.390 Sum_probs=26.6
Q ss_pred CCCcEEEcCCCCCCCCcceEEeC---------------CCcccccceEEEEEC-----CEEEEEEcCCCccceecC
Q 014684 308 ENEPYLIGSESHEDFSRTSIVIP---------------SAQVSKMHARISYKD-----GAFYLIDLQSEHGTYVTD 363 (420)
Q Consensus 308 ~~~~~~IGR~~~~~~~~~~i~~~---------------~~~vSr~Ha~i~~~~-----~~~~i~Dl~S~nGt~vng 363 (420)
+.+.+-|||+.+.. +|.++- ..+|||.-|+|..+. -+.|.--.+|++-.|+..
T Consensus 94 ~tDMFQIGRSte~~---IDFvV~dt~~G~~~~~~~~~~qStISRfACRI~~dR~pPy~ariyAAGFDss~nIfLge 166 (416)
T PF04710_consen 94 DTDMFQIGRSTESP---IDFVVMDTVPGGQDNEDTQPTQSTISRFACRILCDRSPPYTARIYAAGFDSSRNIFLGE 166 (416)
T ss_dssp TEEEEEEES--STT----SEE---------------EEE--S-TT-EEEEEESSTT--EEEEEC---TTSEEEE-T
T ss_pred CcchhhhccCCCCC---cCEEEeCCCCCCCcCCCCCccccchhheeEEEEeccCCCceEEEEeeccCcccceeehh
Confidence 35668899999854 666663 245999999999872 223333344666666654
No 88
>PRK01777 hypothetical protein; Validated
Probab=31.86 E-value=39 Score=27.09 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=21.8
Q ss_pred CCccceecCCCCceEeecCCCcEEeCCCCEEEECCC
Q 014684 355 SEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 390 (420)
Q Consensus 355 S~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~ 390 (420)
+++-..|||+ .... ...|++||+|.|=..
T Consensus 48 ~~~~vgI~Gk-----~v~~--d~~L~dGDRVeIyrP 76 (95)
T PRK01777 48 AKNKVGIYSR-----PAKL--TDVLRDGDRVEIYRP 76 (95)
T ss_pred ccceEEEeCe-----ECCC--CCcCCCCCEEEEecC
Confidence 4567789998 6654 468999999987544
No 89
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=31.65 E-value=1.5e+02 Score=30.24 Aligned_cols=73 Identities=14% Similarity=0.270 Sum_probs=49.2
Q ss_pred ccccEEEeecCCCCcEEEcCCCCCCCCcceEEeCCCcccccceEEEEECCEEEEEEcCCCccceecCCCCceEeecCCCc
Q 014684 297 VSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 376 (420)
Q Consensus 297 ~~~~~~l~~~~~~~~~~IGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vng~~~~~~~l~~~~~ 376 (420)
.++.+.|+ .+.+++|-.. |||.++-+. ..-..+..+++++++.- +.--++|||. +-..+++
T Consensus 15 ~GrEl~Lp----~G~~tlG~~g------cDi~lpL~~--~~~~~L~i~e~gi~l~~--~~~~vwVnG~-----~~~~~~~ 75 (395)
T PRK15367 15 QGREVWLN----EGNLSLGEKG------CDICIPLTI--NEKIILREQADSLFVDA--GKARVRVNGR-----RFNPNKP 75 (395)
T ss_pred cCcEEecC----CCceeecCCC------ceEEEECCC--CCEEEEEEcCCcEEEec--CCceEEECCE-----EcCCCCC
Confidence 44999999 5559999843 999886644 33344566788888852 3456899998 6655544
Q ss_pred EEeCCCCEEEECCC
Q 014684 377 ARFRPSDTIEFGSD 390 (420)
Q Consensus 377 ~~L~~Gd~i~~G~~ 390 (420)
|.-+-.|.+...
T Consensus 76 --LPl~q~Ie~aG~ 87 (395)
T PRK15367 76 --LPSSGVLQVAGV 87 (395)
T ss_pred --CCCcchhhhcce
Confidence 666666665554
No 90
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=30.02 E-value=43 Score=23.92 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=16.9
Q ss_pred ccceecCCCCceEeecCCCcEEeCCCCEEEE
Q 014684 357 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEF 387 (420)
Q Consensus 357 nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~ 387 (420)
...+|||. .+. ...+.|+.||+|.|
T Consensus 34 G~V~VNg~-----~~~-~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 34 NEVLVNGE-----LEN-RRGKKLYPGDVIEI 58 (59)
T ss_pred CCEEECCE-----Ecc-CCCCCCCCCCEEEe
Confidence 44667776 542 12468999999976
No 91
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=29.82 E-value=34 Score=23.08 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=17.1
Q ss_pred CccceecCCCCceEeecCCCcEEeCCCCEE
Q 014684 356 EHGTYVTDNEGRRYRVSSNFPARFRPSDTI 385 (420)
Q Consensus 356 ~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i 385 (420)
.++.+|||+ .+.. ..+.++.||+|
T Consensus 25 ~g~V~VNg~-----~v~~-~~~~v~~~d~I 48 (48)
T PF01479_consen 25 QGRVKVNGK-----VVKD-PSYIVKPGDVI 48 (48)
T ss_dssp TTTEEETTE-----EESS-TTSBESTTEEE
T ss_pred CCEEEECCE-----EEcC-CCCCCCCcCCC
Confidence 356889998 7762 23678899886
No 92
>smart00363 S4 S4 RNA-binding domain.
Probab=27.86 E-value=71 Score=21.56 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=19.5
Q ss_pred CccceecCCCCceEee-cCCCcEEeCCCCEEEECC
Q 014684 356 EHGTYVTDNEGRRYRV-SSNFPARFRPSDTIEFGS 389 (420)
Q Consensus 356 ~nGt~vng~~~~~~~l-~~~~~~~L~~Gd~i~~G~ 389 (420)
.++.+|||. ++ .+ ...++.||.|.+-.
T Consensus 25 ~g~i~vng~-----~~~~~--~~~l~~gd~i~~~~ 52 (60)
T smart00363 25 QGRVKVNGK-----KVTKP--SYIVKPGDVISVRG 52 (60)
T ss_pred cCCEEECCE-----EecCC--CeEeCCCCEEEEcc
Confidence 346788887 66 43 46789999988754
No 93
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=26.36 E-value=56 Score=24.50 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=18.6
Q ss_pred ccceecCCCCceEeecCCCcEEeCCCCEEEECC
Q 014684 357 HGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 389 (420)
Q Consensus 357 nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~ 389 (420)
.-.+|||+ .+. ....|++||+|.|=.
T Consensus 50 ~~v~vNg~-----~v~--~~~~l~~gD~v~i~p 75 (80)
T cd00754 50 VRIAVNGE-----YVR--LDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEEECCe-----EcC--CCcccCCCCEEEEeC
Confidence 34677886 555 357899999998743
No 94
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=23.60 E-value=60 Score=25.08 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=16.2
Q ss_pred ceecCCCCceEeecCCCcEEeCCCCEEEECC
Q 014684 359 TYVTDNEGRRYRVSSNFPARFRPSDTIEFGS 389 (420)
Q Consensus 359 t~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~ 389 (420)
.+||++ .+......+|++||+|.|=.
T Consensus 58 v~vN~~-----~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 58 ILVNGR-----NVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred EEECCE-----ecCccCCCCCCCCCEEEEeC
Confidence 455665 44333225799999988643
No 95
>PF02626 AHS2: Allophanate hydrolase subunit 2; InterPro: IPR003778 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02. This follows the action of the biotin-containing urea carboxylase. Saccharomyces cerevisiae can use urea as a sole nitrogen source via this degradation pathway []. In yeast, the fusion of allophanate hydrolase to urea carboxylase is called urea amidolyase. In bacteria, the second step in the urea degradation pathway is also the ATP-dependent allophanate hydrolase. The gene encoding this enzyme is found adjacent to the urea carboxylase gene []. Allophanate hydrolase has strict substrate specificity, as analogues of allophanate are not hydrolysed by it []. This domain represents subunit 2 of allophanate hydrolase (AHS2) which is found in urea carboxylase.; PDB: 3MML_G 3VA7_A 3OEP_A 3OPF_C 3ORE_B.
Probab=23.45 E-value=1.2e+02 Score=29.33 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=24.2
Q ss_pred CCCccceecCCCCceEeecCCCcEEeCCCCEEEECCC
Q 014684 354 QSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 390 (420)
Q Consensus 354 ~S~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~ 390 (420)
|..-...|||+ +++..+.+.++.||+|+||..
T Consensus 52 Ga~~~~~lng~-----~~~~~~~~~v~~Gd~L~~~~~ 83 (271)
T PF02626_consen 52 GADFEATLNGK-----PVPMWQPFLVKAGDVLKFGPP 83 (271)
T ss_dssp ESCEEEEETTE-----EE-TTSEEEE-TT-EEEEEEE
T ss_pred CCCCceEECCE-----EccCCEEEEECCCCEEEecCC
Confidence 44455668998 999999999999999999974
No 96
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=22.30 E-value=57 Score=24.09 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=7.7
Q ss_pred cEEeCCCCEEEE
Q 014684 376 PARFRPSDTIEF 387 (420)
Q Consensus 376 ~~~L~~Gd~i~~ 387 (420)
.+.|++||.|.|
T Consensus 56 ~~~l~~GD~i~~ 67 (68)
T PF14478_consen 56 SYKLKDGDKITW 67 (68)
T ss_dssp C-B--TTEEEEE
T ss_pred eeEeCCCCEEEe
Confidence 578999999986
No 97
>COG1984 DUR1 Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
Probab=22.21 E-value=2e+02 Score=28.29 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=35.7
Q ss_pred eEEEEECCEEEEEEcCCCccceecCCCCceEeecCCCcEEeCCCCEEEECCCc
Q 014684 339 ARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDK 391 (420)
Q Consensus 339 a~i~~~~~~~~i~Dl~S~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~~ 391 (420)
.++++..+.++..= +..-..+|||. .+.+...+.++.||+++||..+
T Consensus 59 ~t~~f~~~~~ialT-Gad~~a~ld~~-----~i~~~~~~~vk~Gq~L~~g~~~ 105 (314)
T COG1984 59 PTLEFTSDALIALT-GADCEATLDGQ-----EVPPWSPYLVKAGQTLKLGRPK 105 (314)
T ss_pred eEEEEecCcEEEEe-CCcccceECCE-----EcCCCceEEccCCCEEEecCCC
Confidence 35566655544443 55566789999 9999999999999999999853
No 98
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=22.11 E-value=54 Score=23.86 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=10.8
Q ss_pred cEEeCCCCEEEEC
Q 014684 376 PARFRPSDTIEFG 388 (420)
Q Consensus 376 ~~~L~~Gd~i~~G 388 (420)
.+.|++||.|.|=
T Consensus 47 ~~~L~dgD~Ieiv 59 (65)
T PRK06488 47 QFVLHEGDRIEIL 59 (65)
T ss_pred ccccCCCCEEEEE
Confidence 5789999999763
No 99
>smart00797 AHS2 Allophanate hydrolase subunit 2. This domain represents subunit 2 of allophanate hydrolase (AHS2).
Probab=21.95 E-value=2e+02 Score=27.95 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=25.3
Q ss_pred CCCccceecCCCCceEeecCCCcEEeCCCCEEEECCC
Q 014684 354 QSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 390 (420)
Q Consensus 354 ~S~nGt~vng~~~~~~~l~~~~~~~L~~Gd~i~~G~~ 390 (420)
+-.-...||++ ++...+.+.++.||+++||..
T Consensus 52 GA~~~~~ln~~-----~~~~~~~~~v~~Gd~L~~g~~ 83 (280)
T smart00797 52 GADFPATLDGQ-----PVPPWKPFLVRAGQVLSLGAP 83 (280)
T ss_pred CCCCeeeECCE-----EcCCCeEEEECCCCEEEeCCC
Confidence 33445567887 888888899999999999975
No 100
>PRK06437 hypothetical protein; Provisional
Probab=21.39 E-value=91 Score=23.04 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=15.7
Q ss_pred ceecCCCCceEeecCCCcEEeCCCCEEEE
Q 014684 359 TYVTDNEGRRYRVSSNFPARFRPSDTIEF 387 (420)
Q Consensus 359 t~vng~~~~~~~l~~~~~~~L~~Gd~i~~ 387 (420)
..+||. .++ ....|++||.|.|
T Consensus 39 V~vNg~-----iv~--~~~~L~dgD~Vei 60 (67)
T PRK06437 39 VIVNGS-----PVL--EDHNVKKEDDVLI 60 (67)
T ss_pred EEECCE-----ECC--CceEcCCCCEEEE
Confidence 446665 554 4578999999976
No 101
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=20.27 E-value=72 Score=23.02 Aligned_cols=12 Identities=8% Similarity=0.368 Sum_probs=10.2
Q ss_pred cEEeCCCCEEEE
Q 014684 376 PARFRPSDTIEF 387 (420)
Q Consensus 376 ~~~L~~Gd~i~~ 387 (420)
...|++||+|.|
T Consensus 47 ~~~L~~gD~vei 58 (65)
T PRK06944 47 ARALAAGDRLDL 58 (65)
T ss_pred cccCCCCCEEEE
Confidence 567999999976
Done!