Query 014686
Match_columns 420
No_of_seqs 444 out of 1205
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 16:01:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.8E-38 9.4E-43 296.7 34.0 366 1-412 54-432 (451)
2 4gc0_A D-xylose-proton symport 100.0 6.2E-37 2.1E-41 290.7 30.6 385 16-420 55-468 (491)
3 3o7q_A L-fucose-proton symport 100.0 1.5E-36 5E-41 283.9 32.6 360 2-412 53-431 (438)
4 2gfp_A EMRD, multidrug resista 100.0 1.2E-34 4E-39 265.4 17.2 334 2-400 27-363 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 9.9E-33 3.4E-37 261.7 24.6 371 2-412 46-470 (491)
6 2cfq_A Lactose permease; trans 100.0 4.6E-31 1.6E-35 244.6 20.3 361 2-418 35-403 (417)
7 2xut_A Proton/peptide symporte 100.0 3.9E-28 1.3E-32 232.1 14.8 378 7-412 51-501 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.5E-12 5.3E-17 121.4 21.0 175 218-412 30-205 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.5 4.4E-12 1.5E-16 119.7 21.0 180 216-412 13-195 (491)
10 3o7q_A L-fucose-proton symport 99.5 6.1E-12 2.1E-16 116.9 20.6 157 252-412 56-228 (438)
11 2cfq_A Lactose permease; trans 99.4 2E-12 6.8E-17 119.4 11.3 112 18-129 261-374 (417)
12 2xut_A Proton/peptide symporte 99.4 2.5E-11 8.4E-16 115.6 18.4 175 216-411 12-196 (524)
13 2gfp_A EMRD, multidrug resista 99.3 9.7E-12 3.3E-16 113.1 13.4 169 225-417 9-177 (375)
14 4gc0_A D-xylose-proton symport 99.1 8.7E-10 3E-14 104.0 14.0 148 18-176 314-469 (491)
15 2g9p_A Antimicrobial peptide l 62.6 2.7 9.1E-05 19.5 0.8 14 35-48 2-15 (26)
16 3arc_T Photosystem II reaction 28.4 67 0.0023 16.6 3.8 16 162-177 15-30 (32)
17 3b9w_A Ammonium transporter fa 23.4 3.9E+02 0.014 23.7 8.8 15 105-119 296-310 (407)
18 2dw3_A Intrinsic membrane prot 22.8 1.6E+02 0.0053 18.8 4.7 28 391-419 31-58 (77)
19 4dve_A Biotin transporter BIOY 20.4 2E+02 0.0069 22.5 5.6 23 23-45 100-122 (198)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.8e-38 Score=296.71 Aligned_cols=366 Identities=13% Similarity=0.048 Sum_probs=284.0
Q ss_pred CcccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhh----hhhHHHHHHHH
Q 014686 1 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL----SVNFWMAVLTR 76 (420)
Q Consensus 1 i~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r 76 (420)
+.+|+ .+.++ .|++.+++.++..++++++|+++||+|||++++.+.++.+++.+++++ ++|++.++++|
T Consensus 54 ~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (451)
T 1pw4_A 54 LVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 126 (451)
T ss_dssp TTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 35678 88889 999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCcccc-ccccccCccchHHHH
Q 014686 77 FLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS-SESLFGKFPYFLPCL 154 (420)
Q Consensus 77 ~l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~g-w~~~~~~~~~~~~~~ 154 (420)
+++|++.+...+. .+++.|++|+|+|++++++.+.+.++|.+++|.+++.+.+ ..| ||+.| .
T Consensus 127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~w~~~f---------~ 190 (451)
T 1pw4_A 127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA-------WFNDWHAAL---------Y 190 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH-------HTCCSTTCT---------H
T ss_pred HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccHHHHH---------H
Confidence 9999999988887 9999999999999999999999999999999999999887 566 77766 5
Q ss_pred HHHHHHHH-HHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCc--hhhhccchhHHHHHHHHHHHHhh
Q 014686 155 CISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP--KKSLLKNWPLMSSIIVYCVFSLH 231 (420)
Q Consensus 155 ~~~~~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 231 (420)
+.++..++ .++..+.+||++++.+.+++++.+..++. .. +++++++....+ .++.+|+|.++...+..++....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (451)
T 1pw4_A 191 MPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD--DY-NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL 267 (451)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccc--cc-hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHH
Confidence 55555544 34456778888765433222111110000 00 001111111111 46788999999888888888887
Q ss_pred hhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHH-HHHHHHHHH
Q 014686 232 DMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIMVARIAGVLTI-PLLTSYPYI 308 (420)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~ 308 (420)
......+.|.|+.+. +|+++.+.+...+..+++.+++.+ +.+++.||+ ++|+.+..+..+.. ++.+.+...
T Consensus 268 ~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 268 RYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 788888888888765 789999999999999999999987 778888888 88888777666555 444444332
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHH-HHHHhhhhhhHHHHhhhhccCCC
Q 014686 309 AMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSL-FKAAGPAGGGALFSWAQKRLDAS 387 (420)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~~g~~~~g~l~~~~~~~~~~~ 387 (420)
.. .. .........+.+++.....+....+..|..|+++|+++.|+.+...++ |..++|.+.|.+.|..
T Consensus 342 ~~---~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------- 410 (451)
T 1pw4_A 342 PA---GN-PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------- 410 (451)
T ss_dssp CT---TC-HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-------
T ss_pred cc---cC-HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 11 11 122333334445555667777788999999999999999999999999 9999999999999987
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhh
Q 014686 388 FLPGSQMVFFVLNVVEAIGVLMTFK 412 (420)
Q Consensus 388 ~~~g~~~~f~~~~~~~~~~~~~~~~ 412 (420)
|++..|++.+++.+++.++.+.
T Consensus 411 ---g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 411 ---GWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp ---CSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHH
Confidence 8899999988888877666554
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=6.2e-37 Score=290.66 Aligned_cols=385 Identities=14% Similarity=0.073 Sum_probs=271.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHH
Q 014686 16 SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG------------------LSVNFWMAVLTRF 77 (420)
Q Consensus 16 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~ 77 (420)
...|++.+++.+|..++++++|+++||+|||++++++.+++.+++++++ +++|+++++++|+
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999999998 4789999999999
Q ss_pred Hhhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHH
Q 014686 78 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCI 156 (420)
Q Consensus 78 l~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~ 156 (420)
++|++.|...+. ..+++|+.|+++|++..++.+.+..+|..+++.++..+.. ..++.... .+.||.++...
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~ 206 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR-------SGDASWLN-TDGWRYMFASE 206 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc-------cccccccc-chhhHHHhhhh
Confidence 999999998887 9999999999999999999999999999999999888876 34444333 55678877888
Q ss_pred HHHHHHHHHHHHhcccccCCCCCCCCcccchh--Hhhhhhhhhh--------hhhhcCCCCchhhhccchhHHHHHHHHH
Q 014686 157 SLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESASAEV--------KEEEGREATPKKSLLKNWPLMSSIIVYC 226 (420)
Q Consensus 157 ~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (420)
.+..++..+..+++||+|++...++++++..+ ++........ ..+++++........+.+..........
T Consensus 207 ~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4gc0_A 207 CIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSI 286 (491)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHH
Confidence 88888888888999999987544433322221 1111110000 0011111122233344444443333333
Q ss_pred HHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 014686 227 VFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP 306 (420)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (420)
+...........+..+.... .+.+...........++..+++.+ +..++.||+|||+.+..+.....++.+.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKT-----LGASTDIALLQTIIVGVINLTFTV-LAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-----SSCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHh-----cCCCccchhhHHHHHHHHHHHHHH-HHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 33222222222222222222 466666666667777788888877 777888889999999888887777766655
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCC
Q 014686 307 YIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDA 386 (420)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~ 386 (420)
......... +..+....+....+..+..+..+.+.+|.+|++.|+++.|+.+.++++++.+++.+.+.+.+.......
T Consensus 361 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~- 438 (491)
T 4gc0_A 361 TAFYTQAPG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH- 438 (491)
T ss_dssp HHHHTTCCH-HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHH-
T ss_pred HHHhcccch-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 443322222 222222333333444556678889999999999999999999999999999999988877554311100
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhhhhccCC
Q 014686 387 SFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQRHD 420 (420)
Q Consensus 387 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 420 (420)
.+....|++++++++++.++.++ +.||+|+
T Consensus 439 ---~~~~~~~~i~~~~~~~~~i~~~~-~~PETkg 468 (491)
T 4gc0_A 439 ---FHNGFSYWIYGCMGVLAALFMWK-FVPETKG 468 (491)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHHH-HCCCCTT
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHh-eecCCCC
Confidence 04556788899999999888877 7888763
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.5e-36 Score=283.88 Aligned_cols=360 Identities=14% Similarity=0.129 Sum_probs=273.0
Q ss_pred cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHH
Q 014686 2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLSVNFWMAVLTRFL 78 (420)
Q Consensus 2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l 78 (420)
++++|.++++ .|++.+++.+++.++++++|+++||+|||++++.+.++.+++.+++ +++++++.++++|++
T Consensus 53 ~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 126 (438)
T 3o7q_A 53 QQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFI 126 (438)
T ss_dssp HHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 5789999999 9999999999999999999999999999999999999999999999 888999999999999
Q ss_pred hhhhccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhc-cccccCC----------ccccccccccC
Q 014686 79 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA-QPAEKYP----------NLFSSESLFGK 146 (420)
Q Consensus 79 ~G~~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~-~~~~~~~----------~~~gw~~~~~~ 146 (420)
+|++.+...+. .+++.|++|+|+|++++++.+.+.++|.+++|.+++.+. +.....+ ...+|+... .
T Consensus 127 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 205 (438)
T 3o7q_A 127 IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSL-V 205 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHH-H
T ss_pred HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhh-h
Confidence 99999998887 999999999999999999999999999999999999998 4110000 000011000 1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHh--cccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHH
Q 014686 147 FPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIV 224 (420)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~--l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (420)
.+|+..+...++..++..+..++ .||++++++++++ +++.....++++|+|.++...+.
T Consensus 206 ~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 266 (438)
T 3o7q_A 206 LSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-------------------QGSFSASLSRLARIRHWRWAVLA 266 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-------------------TTSHHHHHHHHTTCSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc-------------------ccchhhhHHHHHhChHHHHHHHH
Confidence 11555555555555444333333 3444332111110 11112345678899999998888
Q ss_pred HHHHHhhhhhHHHHHHHh-hcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 014686 225 YCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT 303 (420)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (420)
.++..........+.|.| ..+. +|+++.+.+...+...++.+++.+ +.+++.||+++|+.+..+..+..++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 267 QFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGRF-TGTWLISRFAPHKVLAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 888887777888888888 6655 689999999999999999999887 788888999999999888887777666
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhc
Q 014686 304 SYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKR 383 (420)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~ 383 (420)
.....+.. +. .....+.+++.....+....+..|..|++ ++++.++.. ...+++.++|.+.|.+.|..
T Consensus 341 ~~~~~~~~-----~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~--- 408 (438)
T 3o7q_A 341 ISAFAGGH-----VG--LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA--- 408 (438)
T ss_dssp HHHHCCHH-----HH--HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH---
T ss_pred HHHHcCCc-----HH--HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh---
Confidence 55443321 11 12223444556667788888888888866 889998877 77899999999999999998
Q ss_pred cCCCCCCC-chHHHHHHHHHHHHHHHHHhh
Q 014686 384 LDASFLPG-SQMVFFVLNVVEAIGVLMTFK 412 (420)
Q Consensus 384 ~~~~~~~g-~~~~f~~~~~~~~~~~~~~~~ 412 (420)
| ++..|.+.+++.++..++.+.
T Consensus 409 -------g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 409 -------GNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp -------TSSGGGGHHHHHHHHHHHHHHTT
T ss_pred -------cchHHHHHHHHHHHHHHHHHHHH
Confidence 5 777888776666655554444
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.2e-34 Score=265.36 Aligned_cols=334 Identities=13% Similarity=0.130 Sum_probs=251.2
Q ss_pred cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014686 2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 81 (420)
Q Consensus 2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 81 (420)
.+|+|.++++ .+++.+++.++..+++++.|+++||+|||+++..+..+..++.++.+++++++.+++.|+++|+
T Consensus 27 ~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 100 (375)
T 2gfp_A 27 ARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGM 100 (375)
T ss_dssp HTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5789999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhh-HhhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014686 82 LNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA 160 (420)
Q Consensus 82 ~~g~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 160 (420)
+.+...+. .+++.|++|+|+|++++++.+...++|..++|.+++.+.+ ..||| ..+.+.++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~~~~---------~~~~~~~~~~ 164 (375)
T 2gfp_A 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNWR---------ACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------HHHHH---------HHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------hccHH---------HHHHHHHHHH
Confidence 99988887 9999999999999999999999999999999999999987 44554 4445555555
Q ss_pred HHHHH-HHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHH
Q 014686 161 FGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF 239 (420)
Q Consensus 161 ~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (420)
++..+ ..+.+||++++++++ ++..+..++.+|+|+++...+..++..........+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (375)
T 2gfp_A 165 AGVTFSMARWMPETRPVDAPR----------------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACS 222 (375)
T ss_dssp HHHHCCCCCSSCCCSTTTCCC----------------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCcccCCCCccc----------------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 55433 455677765442211 1122345678889998888777777666555555555
Q ss_pred HHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHH
Q 014686 240 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL-TIPLLTSYPYIAMLSGFGLAF 318 (420)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 318 (420)
|.|..+. +|+++.+.+...+...++.+++.. ..+++.||.+++ ...+... ...+......... .. ....
T Consensus 223 ~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 292 (375)
T 2gfp_A 223 GVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF-GV-MNVW 292 (375)
T ss_dssp SCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHHH-HHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH-HH-HHHH
T ss_pred HHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-cc-ccHH
Confidence 5444332 688999999999999988888877 667777776652 2222222 2222211111110 01 1122
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHH
Q 014686 319 LLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFV 398 (420)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~ 398 (420)
.......+.+++.....+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+.. ++...+.+
T Consensus 293 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------~~~~~~~~ 361 (375)
T 2gfp_A 293 TLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG----------QGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC----------cccHHHHH
Confidence 23333444445556667888888889887 89999999999999999999999999998876 66666665
Q ss_pred HH
Q 014686 399 LN 400 (420)
Q Consensus 399 ~~ 400 (420)
.+
T Consensus 362 ~~ 363 (375)
T 2gfp_A 362 TL 363 (375)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=9.9e-33 Score=261.74 Aligned_cols=371 Identities=12% Similarity=0.074 Sum_probs=244.6
Q ss_pred cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhh-cCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014686 2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 80 (420)
Q Consensus 2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 80 (420)
++|+|.+..+ .+++.+++.++..+++++.|+++|| +|||+++..+.++..++.+++++++|++.++++|+++|
T Consensus 46 ~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 119 (491)
T 4aps_A 46 TGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILII 119 (491)
T ss_dssp HTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHH
T ss_pred hhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3569999999 9999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred hhccchhhh-Hhhhhhhchhhh--hhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHH
Q 014686 81 SLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 157 (420)
Q Consensus 81 ~~~g~~~~~-~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~ 157 (420)
++.+...+. .+++.|++|+++ |++++++.+.+.++|..++|.+++.+.+ ..|||+.| .+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------~~g~~~~f---------~~~~ 183 (491)
T 4aps_A 120 IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE-------AAGYHVAF---------SLAA 183 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HSCHHHHH---------HHHH
T ss_pred HHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHH---------HHHH
Confidence 999988887 999999999988 7778888999999999999999999998 45555444 5555
Q ss_pred HHHHHHHHHHH-hcccccCCCCCCCCcccchhHhhhhhhhh----------------------hh---------------
Q 014686 158 LFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAE----------------------VK--------------- 199 (420)
Q Consensus 158 ~~~~~~~~~~~-~l~e~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~--------------- 199 (420)
+..++..+..+ ..|+..+++.++++++... ++.++..+. .+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (491)
T 4aps_A 184 IGMFIGLLVYYFGGKKTLDPHYLRPTDPLAP-EEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPV 262 (491)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCSCCSCCCSH-HHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccccccCCCCcccc-chhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHH
Confidence 44444333322 2233222211111111111 000000000 00
Q ss_pred ----hhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHH
Q 014686 200 ----EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL 275 (420)
Q Consensus 200 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 275 (420)
...++......+..+....+...+...+...........++.|..+. .+.+..+.+.......+..+++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 337 (491)
T 4aps_A 263 FYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER-----VDSSWFPVSWFQSLNPLFIMLYTP 337 (491)
T ss_dssp HHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS-----CCCSSSCSGGGTTHHHHHHHHHHH
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH-----hccCccCHHHHhccchHHHHHHHH
Confidence 00000111111111222233334344444444455555666676554 444545566667777777777776
Q ss_pred HHHHHHHHhhchHHHHH-----HHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Q 014686 276 SLYPFLERILGPIMVAR-----IAGVLTIPLLTSYPYIAML---SGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVD 347 (420)
Q Consensus 276 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (420)
+.+++.||.+||+... .+..+..++...+...... ..............+.+++.....+....+..|..|
T Consensus 338 -~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 416 (491)
T 4aps_A 338 -FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAP 416 (491)
T ss_dssp -HHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTT
T ss_pred -HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 5666788888765443 5555555555444433211 000112223334444455555667788889999999
Q ss_pred cchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014686 348 QDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 412 (420)
Q Consensus 348 ~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 412 (420)
+++|+++.|+.+...++|..++|.+.+.+.+. ++...|.+.+.+.+++.++.+.
T Consensus 417 ~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 417 KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887653 4666778777777776665544
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=4.6e-31 Score=244.59 Aligned_cols=361 Identities=11% Similarity=0.087 Sum_probs=233.8
Q ss_pred cccccccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHH---HHhhhhhHH-HHHHHHH
Q 014686 2 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT---LFGLSVNFW-MAVLTRF 77 (420)
Q Consensus 2 ~~~~~~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~---~~~~~~~~~-~l~~~r~ 77 (420)
++++|.|+.+ .|++.+.+.+++.++++++|+++||+|||++++.+..+.+++.. ...+++... .+...+.
T Consensus 35 ~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T 2cfq_A 35 HDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI 108 (417)
T ss_dssp HTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHH
T ss_pred HHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999 99999999999999999999999999999999988887755322 123333221 2445667
Q ss_pred Hhhhhccchhhh-Hhhhhhhchh--hhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHH
Q 014686 78 LLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 154 (420)
Q Consensus 78 l~G~~~g~~~~~-~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~ 154 (420)
+.|++.+...+. ...+.++.++ ++|++..+......++|..++|.+++++.+ .+||.. +.
T Consensus 109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--------~~~~~~---------f~ 171 (417)
T 2cfq_A 109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--------INNQFV---------FW 171 (417)
T ss_dssp GGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--------HCSHHH---------HT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--------hchhHH---------HH
Confidence 777666655443 4445555543 456777788888899999999999999875 234433 34
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCCCCcccchhHhhhhhhhhhhhhhcCCCCchhhhccchhHHHHHHHHHHHHhhhhh
Q 014686 155 CISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMA 234 (420)
Q Consensus 155 ~~~~~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (420)
+.++..++..+..+..||++++..+++++++ . ++++......++++|+|+++...+..+........
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 172 LGSGCALILAVLLFFAKTDAPSSATVANAVG-A------------NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp TTTTTTTTHHHHSCSSCCCCSCSSCSSSSSS-S------------CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccccccccccc-c------------ccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence 4444333333333444433321111000000 0 00011112345678899887766655544444444
Q ss_pred HHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014686 235 YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF 314 (420)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (420)
+.+++|.|+.+.. ...+.+....+...+...+..+++.+ ..+++.||+++|+.+..+..+..+..+...... +
T Consensus 239 ~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~---~- 311 (417)
T 2cfq_A 239 FDQQFANFFTSFF--ATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT---S- 311 (417)
T ss_dssp HHHHHHHHHHHTS--SSHHHHTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC---S-
T ss_pred HHHHHHHHHHHHH--hccCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc---c-
Confidence 5556777764331 11123455667777777778888766 778888999999988877776666554443321 1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHH-HHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCch
Q 014686 315 GLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIA-MTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGSQ 393 (420)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~~ 393 (420)
.+ .+.+...+.+.......+....+.+|..|++.||++.+.. +....+|+.++|.+.|.+.|.. |+.
T Consensus 312 -~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~----------g~~ 379 (417)
T 2cfq_A 312 -AL-EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------GFQ 379 (417)
T ss_dssp -HH-HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS----------HHH
T ss_pred -HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc----------CcH
Confidence 11 1222222223333445556678999999999999999994 8888999999999999999976 788
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcc
Q 014686 394 MVFFVLNVVEAIGVLMTFKPFLAQR 418 (420)
Q Consensus 394 ~~f~~~~~~~~~~~~~~~~~~~~~~ 418 (420)
..|.+.+++.+++.++.+. ..||+
T Consensus 380 ~~f~~~~~~~l~~~~~~~~-~~~~~ 403 (417)
T 2cfq_A 380 GAYLVLGLVALGFTLISVF-TLSGP 403 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SSCCS
T ss_pred HHHHHHHHHHHHHHHHHHh-hhcCC
Confidence 8899988888888776655 44443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=3.9e-28 Score=232.07 Aligned_cols=378 Identities=12% Similarity=0.071 Sum_probs=215.7
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHhhhhhhhhhhhc-CCchhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhhcc
Q 014686 7 IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNG 84 (420)
Q Consensus 7 ~s~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g 84 (420)
.+..+ .+++.+++.++..+++++.|+++||+ |||+++..+.++..++.++.++++ +++.+++.|++.|++.+
T Consensus 51 ~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 51 LRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSG 124 (524)
T ss_dssp TTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred cCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 89999 99999999999999999999999999 999999999999999999999999 99999999999999999
Q ss_pred chhhh-HhhhhhhchhhhhhhHHHH---HHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHH
Q 014686 85 LLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA 160 (420)
Q Consensus 85 ~~~~~-~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~ 160 (420)
...|. .+++.|++|+++|+++.+. ...+.++|.+++|.+++.+.+ ..||| ..+.+.++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-------~~g~~---------~~f~~~~~~~ 188 (524)
T 2xut_A 125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK-------NFGAA---------VAFGIPGVLM 188 (524)
T ss_dssp TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH-------TSCHH---------HHHHHHHHHH
T ss_pred ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cccHH---------HHHHHHHHHH
Confidence 88887 9999999999999876666 899999999999999999987 44554 4445555555
Q ss_pred HHHHHHHHhc-ccccCCCCCCCCcccc---hhHhhhhhh---hh-----------------------------------h
Q 014686 161 FGVTIAAFWL-PETLHRHNDDDDSCDV---SYDALESAS---AE-----------------------------------V 198 (420)
Q Consensus 161 ~~~~~~~~~l-~e~~~~~~~~~~~~~~---~~~~~~~~~---~~-----------------------------------~ 198 (420)
++..+..+.. |+.++.++++++..+. ..+..++.. ++ .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (524)
T 2xut_A 189 FVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLV 268 (524)
T ss_dssp HHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhh
Confidence 4443333332 2211111110000000 000000000 00 0
Q ss_pred hhhhcC----------CCCchhhhccchhHHHHHHHH---HHHHhhhhhHHHHHHHhhcCcccCCccCCch-hhHHHHHH
Q 014686 199 KEEEGR----------EATPKKSLLKNWPLMSSIIVY---CVFSLHDMAYSEIFSLWANSPKKLGGLNYST-QMVGEVLA 264 (420)
Q Consensus 199 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~ 264 (420)
.|++++ +.....+..+.++.+...... .+...........++.+... .+.+. ...+....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 342 (524)
T 2xut_A 269 MGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND------MVKPQWFEPAMMQA 342 (524)
T ss_dssp HHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH------SCCCSSSCHHHHHT
T ss_pred hcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh------cCCCeeecHHHHHH
Confidence 000000 000000111112222111111 11111111112223332211 11111 12344444
Q ss_pred HHHHHHHHHHHHHH----HHHHHh---hchHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhhHHH
Q 014686 265 ITGFSLLVFQLSLY----PFLERI---LGPIMVARIAGVLTIPLLTSYPYIAMLS---GFGLAFLLNCASVVKNLLSVSI 334 (420)
Q Consensus 265 ~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 334 (420)
...+..++...+.. ++++|+ .++++.+..+..+..++.+.+....... .......+....++.+++....
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 422 (524)
T 2xut_A 343 LNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLV 422 (524)
T ss_dssp TSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 43344444433222 222333 1223445555555555554443321000 0011122333445556666777
Q ss_pred HHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhccCCCCCCCc-hHHHHHHHHHHHHHHHHHhh
Q 014686 335 ITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRLDASFLPGS-QMVFFVLNVVEAIGVLMTFK 412 (420)
Q Consensus 335 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~g~-~~~f~~~~~~~~~~~~~~~~ 412 (420)
.+....+..|..|+++||+++|+.+...++|+.++|.+.|.+.+..+.........+. ...|++.+++.+++.++.+.
T Consensus 423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
T 2xut_A 423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFAL 501 (524)
T ss_dssp HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999999999988743110000000011 23367777777766655543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.51 E-value=1.5e-12 Score=121.42 Aligned_cols=175 Identities=8% Similarity=0.022 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 014686 218 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL 297 (420)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (420)
+....+..+.............|.+.. ++ .+..+.+.+.+...++..++++ ..+++.||+|||+.+..+.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKNFALAMPYLVE------QG-FSRGDLGFALSGISIAYGFSKF-IMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHTTS------ST-TCSSCHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------Hh-ccHhHHHHHHHHHHHHHHHHHH-hHHHHHHhcCchHHHHHHHHH
Confidence 333444444444444444445554432 26 7888999999999999999988 778888999999999999998
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHH
Q 014686 298 TIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF 377 (420)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~ 377 (420)
..++.++..+.... ......+.+..++.+++.....+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.
T Consensus 102 ~~~~~~~~~~~~~~--~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 102 AAAVMLFMGFVPWA--TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHCHHH--HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHhhhhc--cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777662211 0112234444556666777788899999999999999999999999999999999999999998
Q ss_pred HhhhhccCCCCCCC-chHHHHHHHHHHHHHHHHHhh
Q 014686 378 SWAQKRLDASFLPG-SQMVFFVLNVVEAIGVLMTFK 412 (420)
Q Consensus 378 ~~~~~~~~~~~~~g-~~~~f~~~~~~~~~~~~~~~~ 412 (420)
+.. + |+..|++.+++.++..++.+.
T Consensus 180 ~~~----------g~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 180 AWF----------NDWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHT----------CCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHh----------ccHHHHHHHHHHHHHHHHHHHHh
Confidence 877 7 999999988887776665544
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.47 E-value=4.4e-12 Score=119.73 Aligned_cols=180 Identities=16% Similarity=0.085 Sum_probs=140.9
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHH
Q 014686 216 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-LGPIMVARIA 294 (420)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 294 (420)
+.++......++............+.|..+....+++|.+..+.+.+.+...++..++++ ..+++.|| +|||+.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT-IGGFVADRIIGARPAVFWG 91 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchHHHHHH
Confidence 345566666666666666666777777765433445799999999999999999999988 78888899 8999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcch--hhHHhhHHHHHHHHHHHHhhhh
Q 014686 295 GVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQ--RGAANGIAMTGMSLFKAAGPAG 372 (420)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~g~~~g~~~ 372 (420)
..+..++.+.....++ ...+.+..++.+++.....+...++++|.+|+++ |+++.+..+...++|..++|.+
T Consensus 92 ~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 92 GVLIMLGHIVLALPFG------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHSCCS------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 9888887776655322 1123344455566777788999999999999988 7888888999999999999999
Q ss_pred hhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 014686 373 GGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTFK 412 (420)
Q Consensus 373 ~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~~ 412 (420)
.+.+.+.. +|+..|++.++..+++.+....
T Consensus 166 ~~~l~~~~----------g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 166 VGAAQEAA----------GYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHS----------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhh----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 8999999988777776665543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.46 E-value=6.1e-12 Score=116.92 Aligned_cols=157 Identities=11% Similarity=-0.041 Sum_probs=118.9
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Q 014686 252 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLS 331 (420)
Q Consensus 252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (420)
+|.+..+.+.+.+...++..++++ ..+++.||+|||+.+..+..+..++.++.......+ ....+.+..++.+++.
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~i~~~-~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~l~G~~~ 131 (438)
T 3o7q_A 56 FTLTNFQAGLIQSAFYFGYFIIPI-PAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM---NYTLFLVGLFIIAAGL 131 (438)
T ss_dssp SCCCSHHHHHHHHHHHHHHHTTHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc---cHHHHHHHHHHHHhhH
Confidence 799999999999999999999988 778888999999999999988888877763322211 1223445556667777
Q ss_pred HHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHH-HhhhhccC---------------CCCCCCchHH
Q 014686 332 VSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALF-SWAQKRLD---------------ASFLPGSQMV 395 (420)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~~---------------~~~~~g~~~~ 395 (420)
....+...++++|.+|+++|+++.++.+....+|..++|.+.+.+. +....... .....+|+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 211 (438)
T 3o7q_A 132 GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP 211 (438)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH
Confidence 8888899999999999999999999999999999999999999998 43310000 0000017888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 014686 396 FFVLNVVEAIGVLMTFK 412 (420)
Q Consensus 396 f~~~~~~~~~~~~~~~~ 412 (420)
|++.+.+.++..++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 212 YMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777776666555444
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=2e-12 Score=119.37 Aligned_cols=112 Identities=16% Similarity=0.071 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhccchhhh-Hhhhhhh
Q 014686 18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI 96 (420)
Q Consensus 18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~i~~~ 96 (420)
.++..++..++..++.++.|+++||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+...+. ..++.|.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888889999999999999999999999998888888888888888888888888888876666565 8899999
Q ss_pred chhhhhhhHHHH-HHHHhHHHHHHHHHHHhHhcc
Q 014686 97 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQ 129 (420)
Q Consensus 97 ~~~~~r~~~~~~-~~~~~~~g~~~g~~l~~~l~~ 129 (420)
+|++.|+++.+. .+....+|..++|.+++.+.+
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~ 374 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE 374 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence 999999999998 488889999999999999987
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.36 E-value=2.5e-11 Score=115.64 Aligned_cols=175 Identities=10% Similarity=0.009 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHHHhhhhhHHHHHHHhhcCcccCCccC------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chH
Q 014686 216 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN------YSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPI 288 (420)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 288 (420)
|.++...+..++............+.|+.+. +| +++.+.+.+.+...++..++.+ ..+++.||+ |||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~-~~G~l~dr~~g~r 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-----LLLSIPEELRGAVAKDVFHSFVIGVYFFPL-LGGWIADRFFGKY 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CSSCCSSSTTTTTHHHHHHHHHHHHHHTHH-HHHHHHTTSSCSH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccccccccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcch
Confidence 4455555666666666666666777777654 56 9999999999999999999887 788899999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhH---HHHHHHHH
Q 014686 289 MVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGI---AMTGMSLF 365 (420)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~g 365 (420)
+.+..+.++..++.+...... .....+.+..++.+++.....+...++..|.+|+++|+++.+. .+...++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFE-----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHH
Confidence 999988888777776665532 0122233444555666677788999999999999999877666 88899999
Q ss_pred HHHhhhhhhHHHHhhhhccCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 014686 366 KAAGPAGGGALFSWAQKRLDASFLPGSQMVFFVLNVVEAIGVLMTF 411 (420)
Q Consensus 366 ~~~g~~~~g~l~~~~~~~~~~~~~~g~~~~f~~~~~~~~~~~~~~~ 411 (420)
..++|.+.+.+.+.. +|+..|.+.+++.+++.+...
T Consensus 161 ~~~g~~~~~~l~~~~----------g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 161 SFFASLSMPLLLKNF----------GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTSTHHHHTS----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc----------cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 899999998888777665544
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.34 E-value=9.7e-12 Score=113.07 Aligned_cols=169 Identities=17% Similarity=0.071 Sum_probs=130.9
Q ss_pred HHHHHhhhhhHHHHHHHhhcCcccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 014686 225 YCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS 304 (420)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (420)
.++.......+....|.+.. ++|.++.+.+...+...+...++++ ..+++.||+|||+.+..+..+..++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~------~~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAIADMAR------DLNVREGAVQSVMGAYLLTYGVSQL-FYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------TSSSTTHHHHHHHHHHHHHHHHHHT-THHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHH------HcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 33333444444444554433 2799999999999999999999987 7788899999999999988888887777
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCcchhhHHhhHHHHHHHHHHHHhhhhhhHHHHhhhhcc
Q 014686 305 YPYIAMLSGFGLAFLLNCASVVKNLLSVSIITGLFILQNRAVDQDQRGAANGIAMTGMSLFKAAGPAGGGALFSWAQKRL 384 (420)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~ 384 (420)
....++ ...+....++.+.+.....+....+..|..|+++|+++.+..+....+|..++|.+.+.+.+..
T Consensus 82 ~~~~~~------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---- 151 (375)
T 2gfp_A 82 AVTTSS------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW---- 151 (375)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH----
T ss_pred HHHhcc------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc----
Confidence 665432 2234445556667777788899999999999999999999999999999999999999998877
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhc
Q 014686 385 DASFLPGSQMVFFVLNVVEAIGVLMTFKPFLAQ 417 (420)
Q Consensus 385 ~~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 417 (420)
+|+..|.+.+.+.++..+.... ..||
T Consensus 152 ------~~~~~~~~~~~~~~~~~~~~~~-~~~~ 177 (375)
T 2gfp_A 152 ------NWRACYLFLLVLCAGVTFSMAR-WMPE 177 (375)
T ss_dssp ------HHHHHHHHHHHHHHHHHCCCCC-SSCC
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHH-HCcc
Confidence 7999999888887777664444 3444
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.10 E-value=8.7e-10 Score=103.97 Aligned_cols=148 Identities=15% Similarity=0.091 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHhhh-----hhHHHHHHH-HHHhhhhccchhhh-H
Q 014686 18 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----VNFWMAVLT-RFLLGSLNGLLGPI-K 90 (420)
Q Consensus 18 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grk~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~-r~l~G~~~g~~~~~-~ 90 (420)
.........+...++.++.+.+.||+|||+.++.+.....++.+..+.. ++...+... -+..+.+.+ ..|. .
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 392 (491)
T 4gc0_A 314 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHH
Confidence 4556666778888999999999999999999999888888777665543 122222222 222223333 3455 8
Q ss_pred hhhhhhchhhhhhhHHHHHHHHhHHHHHHHHHHHhHhccccccCCccccccccccCccchHHHHHHHHHHHH-HHHHHHh
Q 014686 91 AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFW 169 (420)
Q Consensus 91 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 169 (420)
.+.+|.+|.+.|++++++......++..+++.+...+.+.. .... ...+...+++.+..+++ .++.+++
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~ 462 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLVA---HFHNGFSYWIYGCMGVLAALFMWKF 462 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh---hhhhhHHHHHHHHHHHHHHHHHHhe
Confidence 89999999999999999999999999999988877665411 0000 01122233444444444 4456788
Q ss_pred cccccCC
Q 014686 170 LPETLHR 176 (420)
Q Consensus 170 l~e~~~~ 176 (420)
+||++.+
T Consensus 463 ~PETkg~ 469 (491)
T 4gc0_A 463 VPETKGK 469 (491)
T ss_dssp CCCCTTC
T ss_pred ecCCCCC
Confidence 9998653
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=62.57 E-value=2.7 Score=19.48 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=11.2
Q ss_pred hhhhhhhhcCCchh
Q 014686 35 FWGLVADRYGRKPV 48 (420)
Q Consensus 35 ~~g~l~dr~Grk~~ 48 (420)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36888999999864
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=28.38 E-value=67 Score=16.56 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=9.9
Q ss_pred HHHHHHHhcccccCCC
Q 014686 162 GVTIAAFWLPETLHRH 177 (420)
Q Consensus 162 ~~~~~~~~l~e~~~~~ 177 (420)
..++...+.+|+|+-.
T Consensus 15 giiFFAI~FRePPri~ 30 (32)
T 3arc_T 15 ALFFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHHHTSCCCCCC
T ss_pred HHHHHhhhhcCCCCCC
Confidence 3445566778887643
No 17
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=23.37 E-value=3.9e+02 Score=23.72 Aligned_cols=15 Identities=7% Similarity=-0.272 Sum_probs=6.7
Q ss_pred HHHHHHHHhHHHHHH
Q 014686 105 GLSTVSTAWGIGLII 119 (420)
Q Consensus 105 ~~~~~~~~~~~g~~~ 119 (420)
+.+....+...|.+.
T Consensus 296 a~~vHgv~Gi~G~l~ 310 (407)
T 3b9w_A 296 VHNLHGLPGLLGGFS 310 (407)
T ss_dssp HHHHTTHHHHHHHHH
T ss_pred CeecchHHHHHHHHH
Confidence 444444444444443
No 18
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=22.76 E-value=1.6e+02 Score=18.84 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=15.6
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhccC
Q 014686 391 GSQMVFFVLNVVEAIGVLMTFKPFLAQRH 419 (420)
Q Consensus 391 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 419 (420)
||..++.+...+.+++.-++-. .+||+.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~-~LPE~S 58 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGR-MLPIQE 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-CTTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-hCchhc
Confidence 5555666655555555544444 567653
No 19
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=20.44 E-value=2e+02 Score=22.53 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhcCC
Q 014686 23 SSFMFGRALTSVFWGLVADRYGR 45 (420)
Q Consensus 23 s~~~~~~~~~~~~~g~l~dr~Gr 45 (420)
.-|.+|..++..+.|++.||..+
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~ 122 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKI 122 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHHHHHHHHccc
Confidence 45667777778888888888654
Done!